BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (406 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=... 825 0.0 UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK... 415 e-114 UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteoba... 393 e-108 UniRef50_C0B3V0 Putative uncharacterized protein n=1 Tax=Proteus... 346 1e-93 UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaprot... 309 1e-82 UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammapro... 308 3e-82 UniRef50_B2Q2V0 Putative uncharacterized protein n=1 Tax=Provide... 291 3e-77 UniRef50_D1NYQ4 Protein mlc n=3 Tax=Providencia RepID=D1NYQ4_9ENTR 285 2e-75 UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1... 260 8e-68 UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH 248 3e-64 UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea b... 195 3e-48 UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacteriu... 175 3e-42 UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 Re... 166 1e-39 UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n... 163 9e-39 UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydi... 162 3e-38 UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DS... 160 1e-37 UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter Re... 159 1e-37 UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillu... 159 1e-37 UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selen... 159 2e-37 UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyt... 156 1e-36 UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 155 3e-36 UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp... 155 4e-36 UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_... 150 8e-35 UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium ha... 150 1e-34 UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentan... 148 4e-34 UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D... 147 1e-33 UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM... 146 2e-33 UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=M... 146 2e-33 UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepI... 145 3e-33 UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon auranti... 144 5e-33 UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 T... 144 5e-33 UniRef50_Q0I2M8 NagC-like transcriptional regulator n=3 Tax=Past... 144 6e-33 UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS61... 143 1e-32 UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminoc... 142 2e-32 UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipart... 142 2e-32 UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostri... 142 2e-32 UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 141 4e-32 UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=... 140 8e-32 UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix oreni... 140 1e-31 UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9... 139 2e-31 UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR... 139 2e-31 UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n... 138 3e-31 UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostri... 137 7e-31 UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliph... 137 1e-30 UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=N... 136 1e-30 UniRef50_D1NUM3 Transcriptional repressor in the Rok family prot... 135 2e-30 UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=... 135 3e-30 UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168... 135 4e-30 UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter w... 134 5e-30 UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales Re... 134 5e-30 UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevi... 133 9e-30 UniRef50_D1BUQ4 ROK family protein n=1 Tax=Xylanimonas cellulosi... 133 1e-29 UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans... 132 2e-29 UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n... 132 2e-29 UniRef50_C9R4P6 Mlc n=2 Tax=Pasteurellaceae RepID=C9R4P6_AGGAD 132 2e-29 UniRef50_C0ZA86 Putative glucokinase n=1 Tax=Brevibacillus brevi... 132 2e-29 UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiph... 132 2e-29 UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiph... 132 3e-29 UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 ... 132 3e-29 UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2I... 131 5e-29 UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola ba... 131 6e-29 UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp... 130 1e-28 UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. ora... 129 1e-28 UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostri... 129 1e-28 UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM... 129 1e-28 UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenu... 129 2e-28 UniRef50_B4D7W0 ROK family protein n=1 Tax=Chthoniobacter flavus... 129 2e-28 UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n... 129 2e-28 UniRef50_B9JL48 Transcriptional regulator protein n=1 Tax=Agroba... 129 3e-28 UniRef50_A5UW86 Glucokinase n=2 Tax=Roseiflexus RepID=A5UW86_ROSS1 128 4e-28 UniRef50_Q9K992 Transcriptional repressor of the xylose operon n... 128 4e-28 UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 127 6e-28 UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix oreni... 127 6e-28 UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobact... 127 6e-28 UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibir... 127 7e-28 UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB 127 7e-28 UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I... 127 8e-28 UniRef50_B8F418 Transcriptional repressor of carbohydrate metabo... 127 8e-28 UniRef50_UPI00016C4534 transcriptional repressor n=1 Tax=Gemmata... 127 9e-28 UniRef50_B2GIX7 Putative NagC family transcriptional regulator n... 126 1e-27 UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepI... 126 1e-27 UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepI... 126 1e-27 UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifi... 125 2e-27 UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 125 2e-27 UniRef50_A3TZT8 ROK family protein n=1 Tax=Oceanicola batsensis ... 125 2e-27 UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales ... 125 4e-27 UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU 124 4e-27 UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ9... 124 5e-27 UniRef50_C9YT50 Putative ROK family transcriptional regulator n=... 124 6e-27 UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum ... 124 6e-27 UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Str... 124 7e-27 UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID... 124 9e-27 UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistip... 123 1e-26 UniRef50_D1C346 ROK family protein n=1 Tax=Sphaerobacter thermop... 123 1e-26 UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1... 122 2e-26 UniRef50_C3QC45 ROK family transcriptional repressor protein n=1... 122 2e-26 UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A... 122 3e-26 UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI 122 4e-26 UniRef50_C0Z9T2 Probable glucokinase n=1 Tax=Brevibacillus brevi... 121 4e-26 UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp... 121 4e-26 UniRef50_Q8RBQ3 Transcriptional regulator n=3 Tax=Bacteria RepID... 121 5e-26 UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae ... 121 5e-26 UniRef50_D2BD51 Transcriptional repressor of the xylose operon n... 121 5e-26 UniRef50_A3I0K9 Putative ROK family transcriptional repressor pr... 121 6e-26 UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminoc... 120 7e-26 UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiph... 120 7e-26 UniRef50_C1D0G6 Putative transcriptional regulator, NagC family ... 120 8e-26 UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geotherma... 120 8e-26 UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n... 120 8e-26 UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM... 120 9e-26 UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon auranti... 120 1e-25 UniRef50_C2KRE7 Possible N-acetylglucosamine repressor n=1 Tax=M... 120 1e-25 UniRef50_C3RN66 ROK family protein (Fragment) n=2 Tax=Bacteria R... 119 1e-25 UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus ... 119 1e-25 UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepI... 119 2e-25 UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridia... 119 2e-25 UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6... 119 2e-25 UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V... 119 3e-25 UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versat... 119 3e-25 UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n... 118 3e-25 UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD 118 4e-25 UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID... 117 6e-25 UniRef50_B3YF83 Putative ROK family protein n=2 Tax=Salmonella e... 117 6e-25 UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp... 117 8e-25 UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacte... 117 9e-25 UniRef50_B8E378 ROK family protein n=1 Tax=Dictyoglomus turgidum... 117 1e-24 UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5... 116 1e-24 UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID... 116 2e-24 UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetal... 116 2e-24 UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reine... 116 2e-24 UniRef50_B9K8B7 Glucokinase n=12 Tax=Thermotogaceae RepID=B9K8B7... 115 2e-24 UniRef50_D1BZ00 ROK family protein n=1 Tax=Xylanimonas cellulosi... 115 2e-24 UniRef50_A6P194 Putative uncharacterized protein n=1 Tax=Bactero... 115 2e-24 UniRef50_C1A9L9 Glucokinase n=1 Tax=Gemmatimonas aurantiaca T-27... 115 3e-24 UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitan... 115 3e-24 UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bif... 115 4e-24 UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_... 114 5e-24 UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobac... 114 5e-24 UniRef50_UPI0001BC4091 ROK family protein n=1 Tax=Fusobacterium ... 114 6e-24 UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=... 114 6e-24 UniRef50_C7MD65 Transcriptional regulator/sugar kinase n=1 Tax=B... 114 7e-24 UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=S... 114 8e-24 UniRef50_D1N7Q5 ROK family protein n=5 Tax=Bacteria RepID=D1N7Q5... 114 8e-24 UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=A... 114 8e-24 UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM... 114 8e-24 UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium R... 113 1e-23 UniRef50_B9L0B4 Transcriptional repressor n=2 Tax=Thermomicrobia... 113 1e-23 UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID... 113 1e-23 UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus ... 113 1e-23 UniRef50_D2PXD4 ROK family protein n=1 Tax=Kribbella flavida DSM... 113 1e-23 UniRef50_C6LD35 Putative xylose repressor n=1 Tax=Bryantella for... 113 1e-23 UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulol... 113 1e-23 UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 113 1e-23 UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=... 113 1e-23 UniRef50_C3QK14 ROK family transcriptional repressor n=13 Tax=Ba... 112 2e-23 UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC ... 112 2e-23 UniRef50_Q185Y3 Putative regulator of a specific sugar metabolis... 112 2e-23 UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C... 112 2e-23 UniRef50_D1BDW5 Transcriptional regulator/sugar kinase n=1 Tax=S... 112 2e-23 UniRef50_D2B9Z8 Transcriptional regulator, ROK family n=1 Tax=St... 112 3e-23 UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=My... 112 3e-23 UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter w... 112 3e-23 UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyc... 112 4e-23 UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerot... 112 4e-23 UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae... 111 4e-23 UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacteriu... 111 4e-23 UniRef50_C7Q3N2 ROK family protein n=1 Tax=Catenulispora acidiph... 111 5e-23 UniRef50_Q6MCP0 Putative glucokinase n=1 Tax=Candidatus Protochl... 111 6e-23 UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_... 110 6e-23 UniRef50_A6NRU6 Putative uncharacterized protein n=1 Tax=Bactero... 110 7e-23 UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiph... 110 7e-23 UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum D... 110 9e-23 UniRef50_B5YHD0 Transcriptional regulator n=1 Tax=Thermodesulfov... 110 9e-23 UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae A... 110 9e-23 UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=... 110 9e-23 UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp.... 110 1e-22 UniRef50_A6DFD9 Probable transcription repressor n=1 Tax=Lentisp... 110 1e-22 UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D... 109 1e-22 UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter w... 109 2e-22 UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B... 109 2e-22 UniRef50_C8X8S2 ROK family protein n=1 Tax=Nakamurella multipart... 109 2e-22 UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6L... 109 2e-22 UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=... 108 2e-22 UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N... 108 2e-22 UniRef50_A4XDL3 ROK family protein n=2 Tax=Salinispora RepID=A4X... 108 3e-22 UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophil... 108 3e-22 UniRef50_D1CHY2 ROK family protein n=1 Tax=Thermobaculum terrenu... 108 4e-22 UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillu... 108 4e-22 UniRef50_C5EMS9 Putative uncharacterized protein n=1 Tax=Clostri... 108 4e-22 UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacteriu... 108 5e-22 UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp... 108 5e-22 UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=C... 108 5e-22 UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obsc... 107 8e-22 UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobact... 107 8e-22 UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_A... 107 9e-22 UniRef50_A3CKM1 ROK family protein, putative n=2 Tax=Firmicutes ... 107 9e-22 UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepI... 107 1e-21 UniRef50_C7IE75 ROK family protein n=1 Tax=Clostridium papyrosol... 107 1e-21 UniRef50_D1BD50 Transcriptional regulator/sugar kinase n=1 Tax=S... 107 1e-21 UniRef50_A8S3B0 Putative uncharacterized protein n=1 Tax=Clostri... 106 1e-21 UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis... 106 1e-21 UniRef50_Q02B83 Glucokinase n=1 Tax=Candidatus Solibacter usitat... 106 1e-21 UniRef50_B9YHG7 ROK family protein n=2 Tax=Nostocaceae RepID=B9Y... 106 1e-21 UniRef50_B2ULP8 ROK family protein n=2 Tax=Verrucomicrobiaceae R... 106 2e-21 UniRef50_D2LWI3 ROK family protein n=1 Tax=Bacillus cellulosilyt... 106 2e-21 UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus ... 106 2e-21 UniRef50_C7N9V6 Glucokinase, ROK family n=1 Tax=Leptotrichia buc... 105 2e-21 UniRef50_A0P1G6 Probable transcriptional regulator protein n=1 T... 105 2e-21 UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans... 105 2e-21 UniRef50_D2QYQ3 ROK family protein n=4 Tax=Planctomycetaceae Rep... 105 2e-21 UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida f... 105 3e-21 UniRef50_C2CVT4 Transcriptional regulator n=1 Tax=Gardnerella va... 105 3e-21 UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus Rep... 105 3e-21 UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C... 105 3e-21 UniRef50_D1AW58 ROK family protein n=7 Tax=Fusobacteriaceae RepI... 105 4e-21 UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acid... 105 4e-21 UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 105 4e-21 UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium ros... 104 5e-21 UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID... 104 5e-21 UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerot... 104 6e-21 UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5... 104 6e-21 UniRef50_UPI00017890E0 ROK family protein n=1 Tax=Geobacillus sp... 104 6e-21 UniRef50_C8SG46 ROK family protein n=1 Tax=Mesorhizobium opportu... 104 6e-21 UniRef50_D2BA00 ROK family protein n=1 Tax=Streptosporangium ros... 103 8e-21 UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 103 9e-21 UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=... 103 9e-21 UniRef50_A5G397 ROK family protein n=7 Tax=Geobacter RepID=A5G39... 103 9e-21 UniRef50_B2J5U6 ROK family protein n=5 Tax=Cyanobacteria RepID=B... 103 9e-21 UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenu... 103 1e-20 UniRef50_A7BBT5 Putative uncharacterized protein n=1 Tax=Actinom... 103 1e-20 UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter... 103 1e-20 UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiph... 103 1e-20 UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=... 103 1e-20 UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acid... 103 2e-20 UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsul... 103 2e-20 UniRef50_Q3ZAE5 ROK family protein n=5 Tax=Dehalococcoides RepID... 102 2e-20 UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acn... 102 2e-20 UniRef50_UPI0001693F21 ROK family protein n=1 Tax=Paenibacillus ... 102 3e-20 UniRef50_D1CBE0 ROK family protein n=1 Tax=Thermobaculum terrenu... 102 3e-20 UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n... 102 3e-20 UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metallir... 102 3e-20 UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp.... 102 3e-20 UniRef50_C0BV65 Putative uncharacterized protein n=2 Tax=Bifidob... 102 3e-20 UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia g... 102 3e-20 UniRef50_D2PPN2 ROK family protein n=1 Tax=Kribbella flavida DSM... 102 4e-20 UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Mic... 102 4e-20 UniRef50_D2Q611 ROK family transcriptional regulator n=2 Tax=Bif... 102 4e-20 UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridiu... 101 4e-20 UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix oreni... 101 4e-20 UniRef50_A6TVI4 Putative glucokinase, ROK family n=1 Tax=Alkalip... 101 4e-20 >UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=MLC_ECOLI Length = 406 Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/406 (100%), Positives = 406/406 (100%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV Sbjct: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD Sbjct: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE Sbjct: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS Sbjct: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL Sbjct: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR Sbjct: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG Sbjct: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 >UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK-family transcriptional regulator) n=2 Tax=Proteus mirabilis RepID=B4EVY3_PROMH Length = 403 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/400 (48%), Positives = 287/400 (71%), Gaps = 1/400 (0%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 P HID +KQ N G V+RLID+ GP+SRI LS+ A LAPASITKI RE++EAHL+ E E Sbjct: 5 PSHIDHVKQFNLGTVFRLIDEHGPISRISLSKKATLAPASITKITRELVEAHLIHETEFP 64 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 G RGRPAVGL +E++ W +L +R++ G + +LR+L ++LVVE++ + ++ L Sbjct: 65 GLGFRGRPAVGLKLESKGWQFLCIRVNNGSLLFSLRELDNQLVVEDTFDFPKQNSDAFLH 124 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 ++ ID FF R+Q ++ERLT+I+IT+ I+D +G+++ P+Y ++++PL + +++ T Sbjct: 125 HFLAAIDTFFQRYQSRVERLTAISITMNAIVDPISGVIYSSPYYA-IQDIPLADKIQEKT 183 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 GV V++QH ++AWTMAE+L+GA++ D++Q+VID VGAGV+T+G LH+ S S VEIG Sbjct: 184 GVAVFLQHSVTAWTMAESLYGAAKNNTDILQIVIDDIVGAGVVTNGKTLHSNSHSAVEIG 243 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 HT+V +CYCG GCLET S+ +++ AQ ++ +S+L+ P+TV++LC A L Sbjct: 244 HTKVIDSQTQCYCGAKGCLETEISIPQLIKKAQHLAQENPTSILNQYPITVETLCDAVLI 303 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 GD A DII V +G ILA+MVN+FNPQKILIGSPL +A LFP+I SI+ LP Sbjct: 304 GDKQALDIINLVAQRLGFILAVMVNIFNPQKILIGSPLCRAKSALFPLILSSIQHHVLPR 363 Query: 367 YSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 Y+ ++ +E T+ N+GT+ A+LVK+A+YNGSLL+ L+QG Sbjct: 364 YAHNLVIEETELRNKGTLPAASLVKEALYNGSLLLELMQG 403 >UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteobacteria RepID=Q7MLY6_VIBVY Length = 435 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 187/402 (46%), Positives = 285/402 (70%), Gaps = 2/402 (0%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 QPGHID IKQ NAG VY+LID GP+SRIDLS+ ++LAPASITKI RE++EAHLV E + Sbjct: 35 QPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKITRELIEAHLVHETTV 94 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 +EA +RGRPAVGL V W +LS+R+ RG + +AL +L +++++ ++ +D +L Sbjct: 95 QEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHERDQDDVL 154 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 R++ I++FF + +L+R+TSIAITLPG++++E GIV +MP Y +V+ + LG + + Sbjct: 155 ARLLHEIEEFFQTYADQLDRVTSIAITLPGLVNSEQGIVLQMPHY-NVENLALGPEIYKA 213 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 TG+PV+I +D AW +AE LFG S+G + + + I H +GAG+I DG +L ++ E+ Sbjct: 214 TGLPVFIANDTRAWALAEKLFGHSQGNENSVLISIHHGLGAGIILDGRVLQGRHGNIGEL 273 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-QPLTVDSLCQAA 304 GH Q+DP GK C+CGN GCLET+AS +I E R+ SS+L + +T++S+C+AA Sbjct: 274 GHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEELEDVTIESICEAA 333 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 GD LA D+I +G ++G +AI++NLFNP+K+LIG +++A ++L+P I I +Q+L Sbjct: 334 ANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIEEQSL 393 Query: 365 PAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 P Y Q + + ++F Q TM GAAL+K A+Y+G LL+++++G Sbjct: 394 PVYHQDLELVESRFYKQATMPGAALIKQALYDGLLLMKVVEG 435 >UniRef50_C0B3V0 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B3V0_9ENTR Length = 335 Score = 346 bits (887), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 161/333 (48%), Positives = 237/333 (71%), Gaps = 1/333 (0%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 NQP HID +KQ N G V+RLID+ GP+SRI LS+ A+LAPASITKI RE++EAHL+ E E Sbjct: 3 NQPSHIDHVKQFNLGTVFRLIDEHGPISRISLSKKAELAPASITKITRELVEAHLIHETE 62 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 + G RGRPAVGL +E++ W +L +R+++G + +LR+L SKLV E++ + + Sbjct: 63 FPDVGFRGRPAVGLKLESQGWQFLCIRVNKGNLLFSLRELDSKLVTEDTFDFPKEYSDDF 122 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L+ + ID+FF R+Q +ERLT+I+IT+ I+D +G+++ P+Y D+K++PL + + + Sbjct: 123 LNHFLVAIDKFFERYQSHVERLTAISITMNAIVDPISGVIYSSPYY-DIKDIPLADKIHE 181 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 TGV V++QH ++AWTMAE L+GA++ DV+Q+VID VGAGVI++G LH+ S S VE Sbjct: 182 KTGVSVFLQHSVTAWTMAEYLYGAAKNNLDVLQIVIDDIVGAGVISNGKTLHSHSHSAVE 241 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGHT+V CYCG GCLET ++ +++ AQL + +S+L+ P+TV++LC A Sbjct: 242 IGHTKVIDSENSCYCGAKGCLETEIAIPQLIKKAQLLAQEDPTSLLNKYPITVETLCDAI 301 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQK 337 L GD A +I+ V +G ILA+M+N+FNPQK Sbjct: 302 LVGDKSALEIVNLVAQRLGFILAVMINIFNPQK 334 >UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaproteobacteria RepID=NAGC_ECO57 Length = 406 Score = 309 bits (791), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 162/400 (40%), Positives = 252/400 (63%), Gaps = 2/400 (0%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q G++D +KQ N+ AVYRLIDQ GP+SRI ++ +QLAPAS+TKI R+++E L++E++ Sbjct: 8 QIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD- 66 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 ++A GR A+ +V ET +H + +R+ R + + L DLSSK++ EE L + L Sbjct: 67 QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLE 126 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 +++ I QF +Q+KL L +I++ LPG++D ++G +H MP + V+ L EALE+ Sbjct: 127 HALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEALEER 185 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 V ++ HDI + +AE FGAS+ D I V + GAG+I++G + + ++ EI Sbjct: 186 FKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH QV+P G+RC+CGN GCLETIA+ +I + L Q S + T+ ++C+AA Sbjct: 246 GHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICKAAN 305 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 +GD LA ++I VG H+G+ +AI +NLFNPQKI+I +++A +L P I I QAL Sbjct: 306 KGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQALK 365 Query: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQ 405 A+ ++ V ++ ++ + ALVK AM NG LL LL+ Sbjct: 366 AFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 >UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammaproteobacteria RepID=A0KIG1_AERHH Length = 425 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 156/395 (39%), Positives = 246/395 (62%), Gaps = 2/395 (0%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q ++D IKQ N+ AVYRLID GP+SR+ ++ L+QLAPAS+TKI R+++E L++E Sbjct: 26 QIANVDLIKQVNSAAVYRLIDLQGPISRVKIAELSQLAPASVTKITRQLIEHGLIKETS- 84 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 +A GR A+ L + ++S ++ RG + LAL DL K + + ++ + P++ Sbjct: 85 PQASTGGRRAISLTTIKHRFQFVSAKLGRGYLQLALYDLDGKELDQHITQVTEIEQQPVV 144 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 D ++ I F Q + L SIA+T+PG+++ E+G+V P Y+ ++ + L + LE H Sbjct: 145 DMLLREIGAFIDSQQDRSRNLISIALTMPGLVNPESGMVIYTPKYQ-IRNLALAKLLENH 203 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 +P Y+ +D + +AE FG SR D I V + G+G+IT G + + ++ EI Sbjct: 204 FNLPCYVGNDTRSLALAEHFFGESRDCMDSILVSVHQGAGSGIITKGKVFLGQNRNVGEI 263 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH QV+P GKRC+CGN GCLETIAS ++I++ + +++ S L + +T+ +C+AA+ Sbjct: 264 GHIQVEPLGKRCHCGNFGCLETIASNEAIVDKVKELISRGHLSSLQEKHITIQEVCKAAM 323 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 GD LA+ +I VG H+GR +AI VNLFNPQK+LI ++ A +ILFP I + Q+LP Sbjct: 324 AGDELARSVIENVGEHLGRAVAITVNLFNPQKVLIAGEITAAEEILFPAIRRCVEHQSLP 383 Query: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL 400 ++ + + + +F NQ T+ G ALVK A+ G LL Sbjct: 384 SFHRGLPIVKARFQNQPTVGGFALVKRALLEGDLL 418 >UniRef50_B2Q2V0 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q2V0_PROST Length = 402 Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 147/396 (37%), Positives = 243/396 (61%), Gaps = 4/396 (1%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 ENQ GHIDQIKQ N G VYR+IDQ GP+SRI LS+ +QLAPASITKI RE+++AHLV+E+ Sbjct: 2 ENQTGHIDQIKQLNTGIVYRVIDQYGPISRIALSKQSQLAPASITKITRELIDAHLVKEI 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E G RGRPA+GLV+E+E W +LS+R++ I L+L++++++ +VE+ +K + Sbjct: 62 EFPVLGLRGRPAIGLVIESEGWQFLSIRLACNSISLSLKEINTQTIVEQDYPFDVKGNEQ 121 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + + S I FF + + LER+T+I+I L G+++ +G+++ +P+Y D+ +PLG L Sbjct: 122 FSNTLSSLISHFFATYSRHLERVTAISIVLDGLVEPFSGVIYALPYY-DIDNLPLGHFLT 180 Query: 184 QHTGVPVYIQHDISAWTMAEAL-FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + TG+P YIQ ++A +A+ R A+++I + ID V A +I +G L + + Sbjct: 181 EQTGLPTYIQPYVNALALADYFSLYEKRTAKNIIYLQIDCVVSAAIINNGIALDSHTRRA 240 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 + GH Q G+ CYCG GCLE ++ +IL+ A + SS +T+DS C Sbjct: 241 IHFGHVQTQNTGETCYCGGIGCLEGAIAIPAILKHAVELQHLYPSSSFFNHDITIDSFCL 300 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A D L ++ + + + L ++N+F + ILI SPL++ + + + ++ Q Sbjct: 301 AVEDQDPLCLHVLNDIAQILAKQLGQLINIFGTELILINSPLNRISSVFYSLLHQYCHSQ 360 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGS 398 ++P Y + +E ++ + + + ALV+ A+Y+GS Sbjct: 361 SIPLYRGELRIEQSEVTKKES--ETALVQQALYDGS 394 >UniRef50_D1NYQ4 Protein mlc n=3 Tax=Providencia RepID=D1NYQ4_9ENTR Length = 403 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 152/404 (37%), Positives = 247/404 (61%), Gaps = 5/404 (1%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 NQ GHIDQIKQ N G VYR+I Q GP+SRI LS+ +QLAPASITKI RE+++AHL+QE E Sbjct: 3 NQTGHIDQIKQLNTGIVYRVIAQHGPISRIALSKQSQLAPASITKITRELMDAHLIQERE 62 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 G RGRPA+GLV E+E W +L++RI ++ L+L+++SSK + E S +K + Sbjct: 63 FPVLGLRGRPAIGLVTESEGWQFLAIRIENNQLTLSLKEISSKTLAENSYSFDVKGNQQF 122 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++ + + FF +++ LER+T+I+I L GI+D+ +G+++R+P Y D+ +P+ L + Sbjct: 123 CLQLSALMSLFFEQNKNCLERVTAISILLDGILDSSSGVIYRLPNY-DLDALPISNYLTE 181 Query: 185 HTGVPVYIQHDISAWTMAEAL-FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 TG+PVY+ ++A + + L + R +++I + + V V+ L + + + Sbjct: 182 QTGLPVYLNPSVNALALMDNLSYSTQRRNKNIIYLQLHDVVNIAVLNQEKSLDSSTRHPI 241 Query: 244 EIGHTQVDPY-GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 GH V+ G CYCG GCLET+ SV SIL+ A++ L +S+L+ + + ++++CQ Sbjct: 242 LFGHIPVEILQGLDCYCGGKGCLETLVSVSSILKQARILLADYPASILNQKEINIEAICQ 301 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A D L I+ V + LA+M+N+ Q ILI SPL+ + + + + I Sbjct: 302 GANIADSLCLKILDSVAQQLAHPLAMMINILGTQLILINSPLNSSDEYWYTQLHHYINLY 361 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 P Y + +E + FS + + A++ ++Y+GSLL++LLQG Sbjct: 362 VNPLYRSKLLIEKSTFSIKES--ETAVIHHSLYDGSLLLKLLQG 403 >UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1SS79_PSYIN Length = 408 Score = 260 bits (664), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 136/405 (33%), Positives = 234/405 (57%), Gaps = 7/405 (1%) Query: 1 MVAENQPG-----HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREML 55 MV NQ +D IKQ N+ +Y++I++ P+SR+ ++ +++LAPAS+TKI R++L Sbjct: 1 MVRNNQQADSVIASVDHIKQLNSATIYKVIEKYAPISRVKIANVSKLAPASVTKITRQLL 60 Query: 56 EAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQE 115 + ++ E ++A GR A+ L T+ H L+++I + + L+ +L+++ + + + Sbjct: 61 QQGIICETA-RQASTGGRCAISLAPNTDNIHVLAIKIGQKTLSLSCYNLAAEQLTTKKIK 119 Query: 116 LALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE 175 + +D+ LL +IS ID F + QK + ++++IAI+L G+I+ + G+V P++ V Sbjct: 120 IKSEDEQQLLAFLISEIDNFIKKQQKNMGKISAIAISLSGLINPKKGVVLYSPYHPLV-N 178 Query: 176 MPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLL 235 PL +EQH +P +I + + +AE FGAS+ D I + I H VG+G+I +G L Sbjct: 179 FPLANKIEQHFQLPTFIGNHTRSLALAEHYFGASKECLDSILISIHHGVGSGIIIEGKAL 238 Query: 236 HAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL 295 + ++ EIGH Q +P G++C+CGN GCLET S I+E + + Q + L L Sbjct: 239 LGQNFNIGEIGHIQANPAGRQCHCGNFGCLETEVSDRVIVEKVAIAIKQGSFTRLSLDSL 298 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 ++ + QAA D L + I+ ++G+ +AI++NL NPQKI+I + +A L I Sbjct: 299 NIEKIYQAAEDNDPLCQKIVEDAATYLGKAIAILINLLNPQKIIIAGKIIRAKTSLLSTI 358 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL 400 I Q LP + + +E++ T+A AL+K A+Y G LL Sbjct: 359 EQCIAHQVLPNFQHKVQIETSLLEPDTTLAAFALIKQAIYEGDLL 403 >UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH Length = 411 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 138/399 (34%), Positives = 223/399 (55%), Gaps = 6/399 (1%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G ID I+Q N G VY +++ +SR DLSRL L+PASITKI RE+L+ LV Sbjct: 15 GSIDLIRQLNYGLVYASLEEHKELSRTDLSRLTGLSPASITKITRELLDGGLVVTCGESS 74 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 G RGR L + + +LS+R+ RG + +AL DL+ + + + + LL Sbjct: 75 VG-RGRRQTLLRINERRFQFLSMRLGRGYVDMALFDLAGRSLARHRHVFSEGERADLLAS 133 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 ++ I+ F KK RL IA+ LPG ++ +G+V PFY D++ PLG L++ Sbjct: 134 LVRAIEGFL---PKKALRLACIALCLPGQVERHSGMVKHFPFY-DLRNWPLGPTLQEAFA 189 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 VPV + D+ W AE +GA++ D + V + +++G G++ +G L+ + S+ L ++ H Sbjct: 190 VPVLVSGDVRTWIQAEREWGAAKNCADAVLVFVHNDIGVGMVVNGQLIESESALLGDLSH 249 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 Q++PYG+RCYCG GC T+ + + LE L + M + +T+ LC+ AL G Sbjct: 250 LQLEPYGQRCYCGGFGCACTLVT-NQALEAQYRDLRERMQEYDLPESVTIRELCELALAG 308 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + L +DI+ + R+L+ ++ L NP K+L+G +++A +LFP++ S+ Q Y Sbjct: 309 NSLCQDILHQAAGRLSRVLSNLICLLNPGKLLLGGEITRADRLLFPMLHQSLASQLPAEY 368 Query: 368 SQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 + +EST F T + V A+ +GSLL+ LL+G Sbjct: 369 LVRLQIESTHFYEDPTKPTSVQVHKALRDGSLLLDLLRG 407 >UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea blandensis MED297 RepID=A4BDK2_9GAMM Length = 402 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/405 (29%), Positives = 213/405 (52%), Gaps = 7/405 (1%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M N ++D +KQ N ++R+I + G +SR L ++ LA S+TK+ R ++E +LV Sbjct: 1 MTNTNPVANLDSVKQYNLMRLFRIIVEYGLISRTQLVEVSDLAAGSVTKLTRLLIEQNLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E+ ++ RGR AV L +T+ L+ R R +++ L DLS L+ E++ L + Sbjct: 61 HEVA-QQQSERGRKAVLLAPKTDDIQILAARADRQHLYVGLCDLSGNLLQREAEPLNADN 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + + ++ + F H ++ + I +T+PG++D GIV+ MP + V E+PL + Sbjct: 120 EDEFVAQLTRSLRHFLTTHADQVRNVVGIGVTMPGLVDANRGIVNFMP-HVPVHELPLAD 178 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 + +P YI SA +AE GAS AR+ + + + + VGAG+I + L + Sbjct: 179 IITDALEMPCYINSFASAMALAEKQIGASFHARNSVFIEVHNGVGAGIILNNELY--SGT 236 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGH Q+D GK C CGN+GCLET S +I+E R Q++ S+ + T+ + Sbjct: 237 GVGEIGHIQIDRLGKPCICGNYGCLETEVSDSAIVEHFNQR--QALQSVDTERAETIQDV 294 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 QAA + A ++ AH+G +A + NLF P I++ +++A ++ PV+ ++ Sbjct: 295 LQAAGELNENALAVLKEAAAHIGTAMATVANLFRPDSIILAGAVTQAWSLIHPVLEQQLK 354 Query: 361 QQALPAYS-QHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLL 404 ++L + I + + + +G ALV+ + G + L Sbjct: 355 TKSLQVRGLKPIELLRSDIYDSPWYSGYALVRQGLLEGDIFHTLF 399 >UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67NW4_SYMTH Length = 403 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 113/394 (28%), Positives = 198/394 (50%), Gaps = 13/394 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 I+ N V RL+ G +SR DL+ L +++ +V E+LE V+E+ E+ G Sbjct: 8 IRAINKQRVLRLVRSAGAMSRADLAERTGLTRPTVSAVVAELLEEGWVEEIGTGESSG-G 66 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 RP + L A + + G + L DL+ + Q + +D L +D++ + Sbjct: 67 RPPILLRFNPRARWVIGAELGAGHVRAVLADLAGNVFHRFKQRVESRDPLIEVDQLERAV 126 Query: 133 DQFFIRHQKKLERLTSIA---ITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 ++ + + T +A I + G+ID E G+ P Y+ V+++P+ L++ +P Sbjct: 127 -RYLLDQTPRYGPPTPVAGVGIGITGVIDPEEGVWRYSPHYQ-VRDLPVAPMLQERLSLP 184 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V+I++D A E FGA++G ++ + + +GAG+I DG L EIGH Sbjct: 185 VWIENDARAMAWGERSFGAAQGVDNLAFIRVGVGLGAGIIIDGRLYGGAHQGAGEIGHIM 244 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH----GQPLTV--DSLCQA 303 V G RC CG+ GCLET+ S +I A R+ Q +++ G P V ++ +A Sbjct: 245 VKERGLRCRCGSDGCLETVGSAIAIARRAVQRMAQGEETLIRELCGGDPSKVIATTVIEA 304 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD +A++I++ G +G + M+NL NP ++IG S+A D L + + ++ Sbjct: 305 ADAGDRVAQEILSEAGRFLGIGIGAMINLLNPAMVIIGGGTSRAGDYLIEPLRQAALERT 364 Query: 364 LPAYSQHISVESTQFS-NQGTMAGAALVKDAMYN 396 LPA + + + T+ + G + GAALV + ++ Sbjct: 365 LPALRERVKIVRTELGEDAGPLGGAALVIEELFR 398 >UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLD7_MOOTA Length = 410 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/403 (24%), Positives = 208/403 (51%), Gaps = 9/403 (2%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 N+ G++ +K+ N ++ +I + +SR L++L L PA+IT IVR+++ + V E Sbjct: 3 NEVGNLQLVKKLNRISILNIIRKHNTISRQQLAKLTGLTPAAITGIVRDLVASGYVIEKG 62 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 + ++ N GR V L ++ + L I+R L + +L +K ++ + + + D Sbjct: 63 LGKS-NGGRRPVKLQFNPDSGYVLGAEITRNSTTLGMVNLDAKPLILKQYNIDMTDPQQG 121 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMP-FYEDVKEMPLGEALE 183 L R+ + + I + + + + + PG++D +V R P + +++P+ L+ Sbjct: 122 LSRLADEVTKMIIESGIESKNILGMGVAYPGLVDISTRVVKRSPNLGKKWRDIPIENWLQ 181 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + TG+ ++++++ +A MAE FG + +++ + + + AG+I +G L + Sbjct: 182 EMTGIKIFVENNSNAAAMAEYCFGRGKETKNMAYINLGEGISAGIILNGMLAYGFRGYTG 241 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRL---NQS---MSSMLHGQPLTV 297 EIGH +D G C CGN+GCLE++ +V +++ A L NQ + L + + Sbjct: 242 EIGHLVIDEDGPLCNCGNNGCLESLCAVPALVRKANNELSLYNQKDPLKAIWLEKGEVKI 301 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 + + A A+ +I G ++G+ +A ++N+FNP+ I IG L++A + L + + Sbjct: 302 EDIMANANNVGSYAQKLIRQAGWYIGKAIAAIINVFNPEAIFIGGILAEAGNSLLDPLIE 361 Query: 358 SIRQQALPAYSQHISVE-STQFSNQGTMAGAALVKDAMYNGSL 399 S+++ A P + + +E S+ + G A+ A++ G + Sbjct: 362 SVQKHAFPELVREVRIELSSMRKDTGFYGACAIAIRALFEGGV 404 >UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n=2 Tax=Bacillus RepID=Q9KDW7_BACHD Length = 407 Score = 163 bits (413), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 110/389 (28%), Positives = 200/389 (51%), Gaps = 13/389 (3%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G +K N + I GP+SR D+++ +L P ++T IV E++E LV+E ++ E Sbjct: 5 GSFQLMKSMNRSLILNTIRLDGPISRADIAKKTKLTPPTVTNIVAELIEEKLVRESKMGE 64 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP---L 124 + GR + L ++ + + L + + L DL+ + VE + L DL L Sbjct: 65 S-RGGRKPILLTIDAKNSFVIGLDVGGYRVRAVLTDLNGE--VEGQTTVELSSDLTEETL 121 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 +D++I F + + + +++ I I + GI+D ++G+ P ++ + + L E Sbjct: 122 IDQLIKITVTLFEQCKMQKDKVIGIGIGMHGIVDHQSGMAVFAPNFQ-LTNIDLKTPFES 180 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 VPV++++D A + E FG +G VI V + +GAG++ + L H E Sbjct: 181 TFDVPVFVENDARALALGETWFGNGQGIDHVICVNVGVGIGAGIVLNKRLFHGVHGIAGE 240 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQ------PLTVD 298 IGHT VD +GK+C CGN+GCL+T+A + + E A + +ML + ++ + Sbjct: 241 IGHTTVDIHGKKCTCGNYGCLQTVAGGNMLKERAIHDIASGRKTMLLEKVEGDMDRISGE 300 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + Q AL GD L+ +I+ G ++G + ++N NP +I++G +SKA D + + Sbjct: 301 IIHQCALAGDPLSIEILEEAGKYLGIGITNIINFINPDRIIVGGGVSKAGDFVLEPLRKM 360 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGA 387 ++++AL A ++ V + + GT GA Sbjct: 361 VKERALTAKARETEVVTAELGEWGTAIGA 389 >UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM15_9FIRM Length = 412 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 185/392 (47%), Gaps = 18/392 (4%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 N + +K+ N V LI + GP+ R +L+++ L P +IT I+RE+LE LV E Sbjct: 3 NNGANSKYVKKRNRITVLNLIKEHGPIGRQELAQITGLTPPAITGIIRELLELGLVHEDG 62 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 E+ GR V L ++A + + + ++RGE + + DL + L + + Sbjct: 63 YGES-RGGRRPVKLTFNSKAGYVIGVEVTRGETTVGVADLMNDPTDIARYPLDMSEPAAG 121 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHR-MPFYEDVKEMPLGEALE 183 L + + + K+ + I PG++ + G V R + + PL E LE Sbjct: 122 LASLAELLRRIMNDEGKQGRSFVGVGIAFPGLVQAKTGTVQRSVNLGPAWRSYPLQEKLE 181 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G+PV+I+++ +A +AE FG RD++ V + + AGVI D ++ Sbjct: 182 DVLGLPVFIENNSNACVLAERWFGGGVCCRDLVYVNLGEGISAGVILDDRIVQGFQGYAG 241 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 EIGH +D G +C CGNHGCLE + SV ++++ A+ + + + G PL Sbjct: 242 EIGHIVIDESGPQCNCGNHGCLEALCSVPALIKQAR----RDLPGLADGDPLKARWQSSG 297 Query: 304 ALR-GDLL--------AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPV 354 + DLL A +++ +GR +A ++NL+NP+ + +G L+ A P+ Sbjct: 298 DIELADLLAVAQPGTYANALLSRAVHWIGRAVAAVINLYNPEAVFLGGQLAGAMARFEPI 357 Query: 355 ISDSIRQQALPAYSQHISVESTQFSNQGTMAG 386 + D++ A P + S FS G G Sbjct: 358 LRDAVAAHAFPEIA---SATRIAFSALGEYPG 386 >UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLA5_9SPHI Length = 410 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 102/378 (26%), Positives = 187/378 (49%), Gaps = 15/378 (3%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAV-GLVVETEAWHY 87 G + L+R+ + S+T +V E+++ V + N RP + GL ++ HY Sbjct: 37 GTCTLAHLTRMLHSSVPSVTSLVEELIDNQWVTPIGTATGSNGRRPVLFGLNTKS---HY 93 Query: 88 LS-LRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERL 146 ++ L +S + + ++ K++ +L L D+ L ++ + + ++ L Sbjct: 94 VAVLDVSTHDTKILFMNVQRKVIFRGDYDLRLNDNPSFLTSLVHYFHNALADSEISIDDL 153 Query: 147 TSIAITLPGIIDTENGI-VHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEAL 205 ++ I++PG++D G+ + ++ + +P + L PVY+ +D A + E+ Sbjct: 154 IAVGISMPGLVDARRGLNLTYKNLHQTGESLP--QWLSAELNKPVYLINDTKATVLGESR 211 Query: 206 FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCL 265 FG ++G + V+ + ID VG G+I +G + S E+GH QVDP G+ C+CG GCL Sbjct: 212 FGGAQGKKQVLAINIDWGVGLGIIVNGEVFQGASGFAGELGHIQVDPDGELCFCGKIGCL 271 Query: 266 ETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALRGDLLAKDIITGVGA 320 TI S ++++ AQ + S L H + +D + AA GD A DI+ G Sbjct: 272 STITSASALVKRAQTDILAGQVSKLATFRDHVDQIDIDEVINAANSGDSYAIDILHETGY 331 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSN 380 +G+ LAI ++LFNP+ I++ L KAA + I +I + L + +++E TQ + Sbjct: 332 QLGKGLAIAISLFNPEIIVVDGVLFKAAAFILNTIEQAISKYCLSDFRNDMTIEVTQLNG 391 Query: 381 QGTMAG--AALVKDAMYN 396 G A +++D N Sbjct: 392 TAKWLGTHAYMMEDIFAN 409 >UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter RepID=B0KBZ3_THEP3 Length = 408 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/388 (26%), Positives = 195/388 (50%), Gaps = 15/388 (3%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL-EIK 66 G+ + IK N V I GP+SR D+S+ L +++T IV E+ +LV E+ E Sbjct: 6 GNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELENQNLVHEVGEAD 65 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK---DDLP 123 G GR + L + + ++I + AL +L S+++ E + + K + Sbjct: 66 STG--GRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEII--EKRVVPFKKGTNSNT 121 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENG--IVHRMPFYEDVKEMPLGEA 181 +L+ ++ +I++ + + L I + + G++D + G I M + +V+ +G Sbjct: 122 VLNMVVENIEKLITKIPYN-KNLMGIGVAVSGLVDQQKGKLIYSGMLNWSNVE---IGNI 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE VPVYI +D++A+T+AE +G R + I V +G+G++ + L Sbjct: 178 LENKFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGG 237 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH-GQPLTVDSL 300 EIGH + G++C CG GCLE AS D I++ + + S + + L+++ + Sbjct: 238 AGEIGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKV 297 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 + A GD+LA D++ ++G L ++NL NP I++ A DI+ PVI+D ++ Sbjct: 298 YEYAKEGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVK 357 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAA 388 + + + ++ ++ ++G + GA+ Sbjct: 358 NNFFKMHEKKVQIKVSELGDEGWVIGAS 385 >UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65CW6_BACLD Length = 390 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/385 (27%), Positives = 185/385 (48%), Gaps = 13/385 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q G +K N + I P+SR ++++ ++ P +++ IV+E++ LV+E + Sbjct: 2 QRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKESTL 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-- 123 + GR L + T A++ + + + L DL+ ++ S LK L Sbjct: 62 GRSSG-GRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSS--LLKKPLTNE 118 Query: 124 -LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 ++ + + R + E++ I I + G++D E G+ P ++ +P+ + L Sbjct: 119 RFMEVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMSRIAPIL-NLTNIPIKDVL 177 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 EQ + V +++D A + E+ FG A + V I VGAG++ +G L H Sbjct: 178 EQEFNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIA 237 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 E+GH +D G++C CGN GCL+TI S +I E + RL +S S LT L + Sbjct: 238 GELGHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDS------LTAKDLFE 291 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A G ++ G +G L ++L NP KI++G + K + P I ++I+Q+ Sbjct: 292 MAENGCQTCIELFQETGVIIGIGLTNFIHLVNPGKIVLGGGVMKGGRFILPAIRETIQQK 351 Query: 363 ALPAYSQHISVESTQFSNQGTMAGA 387 AL A ++ V T+ ++ T+ GA Sbjct: 352 ALTAEARQTEVTITKLGDEATLYGA 376 >UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZR7_9BACI Length = 404 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/396 (26%), Positives = 199/396 (50%), Gaps = 16/396 (4%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G +K N V +I + GP+SR D+S+ A L P ++T IV ++L+ LV+ Sbjct: 1 MVQGMTGSFRLMKSLNRSLVINIIRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVK 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL----A 117 E A GR V L + + + + + G+I + L +L+++L+ + + L Sbjct: 61 EGRTG-ASKGGRRPVLLSINYNNHYVIGVDVGTGQIRVGLSNLNAELLNRKKETLPAGIK 119 Query: 118 LKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMP 177 + + +L R++ D +++ I I + GI+D E GI P + D E+P Sbjct: 120 AGEFMTILYRLV---DDMITNSDVSRDKIVGIGIGMHGIVDEEKGISIYAPHF-DFGELP 175 Query: 178 LGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHA 237 L E LE +PV +++D +AE FG +R +++ + + +GAGVI +G + H Sbjct: 176 LKERLEARYEIPVKVENDARCSAIAEMWFGDTRANPNLVFINVGDGIGAGVILNGQI-HR 234 Query: 238 GSSSLV-EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----H 291 G + E+GH VD G++C CG++GCL T+AS I E A + S+ L + Sbjct: 235 GHHHIAGELGHMIVDLNGRQCTCGSYGCLHTVASGIHIRERAIHEITLGRSTALREMREN 294 Query: 292 GQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADIL 351 + + + + +AAL GD A+++ G +G + ++N NP +I++G + KA + Sbjct: 295 KEDIDGEVIYEAALHGDEFAEELFAQAGRFLGLAVTNVINFLNPDQIVLGGGVMKAGAFV 354 Query: 352 FPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGA 387 + +++ ++AL ++ + + + + GA Sbjct: 355 MKPLVETVNRRALTDDARKTEITVSSLGSHSALLGA 390 >UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQJ9_BACS4 Length = 419 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/402 (23%), Positives = 204/402 (50%), Gaps = 14/402 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q G + +K N A+ +I GP+SR +++++ +L P ++ IV E++++ +V E Sbjct: 6 QTGSFEGMKSLNKTAILNIIRLKGPISRAEIAKMTKLTPPTVGSIVGELIDSKMVIEETG 65 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL---KDDL 122 + + GR + L + +++ + + +R I + L K+ ++L+ KD+ Sbjct: 66 ESKSHGGRKPIMLTINASSYYVIGIYGAREIIHTVIATLDGKISYSNEEKLSTPPTKDEY 125 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 +D + + +++ + + K ++ I + + G++D + GI P ++ +P+ + L Sbjct: 126 --IDLLKNGVEKVLQQKRIKQNKVLGIGVGMHGLVDPQKGISIFSPHLH-IENIPIKQEL 182 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E +PV + +D+ +AE+ +G + + + + + +G+G++ +G + S Sbjct: 183 ESAFDIPVLVDNDVRTLALAESWYGEGKDISNFVCLSVGLGIGSGIMLNGEIYTGQYHSA 242 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH------GQPLT 296 EIGHT VD G RC CGN+GCLE AS +I+ + L S++++ LT Sbjct: 243 GEIGHTVVDINGPRCQCGNYGCLEAYASELAIISRVKKGLRLGRSTIINDWIKETDSQLT 302 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILI-GSPLSKAADILFPVI 355 ++ + AA +GD +++ G +G +A ++N+ P K+++ G + L + Sbjct: 303 IEMVFDAAEKGDAFVLEVLEETGRFLGIAVANLINILTPSKVILEGRIFEAGGNTLLSPL 362 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYN 396 + I++ +L +YS +S+ ++ +G + GA LV +Y Sbjct: 363 KEIIKKSSLRSYSDDVSIVTSDLGKKGMVIGAFTLVLKELYT 404 >UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E382_DICTD Length = 400 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 188/368 (51%), Gaps = 15/368 (4%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 +P +I ++ TN V I ++GP+SR D+S++ +L+P++++ IV ++ +V+E Sbjct: 2 KPVNIKSMRMTNVSLVLDTIRRMGPISRYDISKITKLSPSAVSSIVENLINVGIVKETPA 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 K GR + L + ++ + + I + +I L LS K++ + L D +L Sbjct: 62 K-VTKVGRRPIELTLNETGYYPIGIEIEKDKITGILMALSGKILKSKVINLNTTDVNEVL 120 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYE----DVKEMPLGEA 181 ++ ++ + I K E + + + +PG I+ + G+ P ++KE LG+ Sbjct: 121 GSVV-NVYRSLIEDVNK-EEIIGVGVAVPGTINRKEGVCIFSPNLGWRNINIKEY-LGQY 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 ++ + P++I+H I A T E +GA G ++I V + V AG + DG L + Sbjct: 178 IKDY---PLFIEHIIKAVTYGEMWYGAGIGKDNIICVRVGSGVSAGFVLDGKLYRGPNDR 234 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT----V 297 E GHT ++ GK+C CG++GCLET S + E + ++ + ++ + T + Sbjct: 235 AGEFGHTVIERNGKKCKCGSYGCLETYVSTQVLYEKVFEGIQKNAYTKVNIENKTKDEIL 294 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 D + +A GD +I +G ++G +A ++NLFNP+ I+I LSKA ++L + Sbjct: 295 DEIIEAGKSGDRFILNIFEEMGTYLGIGIANLINLFNPEIIIIAGGLSKAGELLLEPVRR 354 Query: 358 SIRQQALP 365 + A P Sbjct: 355 IVNLHAFP 362 >UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017885B4 Length = 403 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 110/391 (28%), Positives = 197/391 (50%), Gaps = 10/391 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G+ I+ N V I GP+SRI+L++ +L+P+++ V+E++ V E+ Sbjct: 5 KKGNHKLIQALNRSKVLNKIRTEGPISRIELAKKNKLSPSTVASAVQELIREGYVSEIGT 64 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 + GR + L + L++ I+ + LA +L +K+ +E+ +A ++ Sbjct: 65 GSSSG-GRKPILLKFNPDNHFLLAVSITNSVMILARMNLEAKVFAKETHPIAGLQGEAVI 123 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 +R++ +D F + Q+ LER I+I +PGI+ +G+VH + +PL E Sbjct: 124 ERLLQLMDDF-MAGQEDLERCVGISINVPGIVSDSHGVVHYNTKLR-MTNVPLKRIFEDR 181 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 G+ ++++D+++ +AE FG A ++I + I +G+G++ + HLL E Sbjct: 182 YGMRTWVENDMNSVVLAERRFGDYAFA-NLIYISIGDGLGSGILINDHLLRGKHGGAGEF 240 Query: 246 GHTQVDPYGKRCYCGNHGCLETIAS---VDSILELAQLRLNQSMSSMLHGQPLT--VDSL 300 GHT V+ G RC CGN GCL++ S V S + A +M L G + V S+ Sbjct: 241 GHTSVNRSGIRCECGNAGCLDSYISWIAVYSRIITAIATGRPTMIQELSGGDYSKIVPSV 300 Query: 301 CQAALR-GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + ALR GD LA+D+ V H+G + +VN+FNP+ +++G L+ L ++S I Sbjct: 301 FKEALRKGDKLARDLNEEVAEHLGAAIVNLVNMFNPEALILGGDLAHGNPELLDMVSVYI 360 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALV 390 + A+P + + + GAA V Sbjct: 361 DRHAMPILKDDMVFGLASLGEEDKLMGAASV 391 >UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_9ACTN Length = 389 Score = 150 bits (379), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 101/399 (25%), Positives = 196/399 (49%), Gaps = 42/399 (10%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 PG +++ N + + Q G +++++L+ + L+PA+++ IV+E+ A ++ Sbjct: 3 PGSQTSLREANRARIVSAVQQRGSLTQVELAGVTGLSPATVSNIVKELTGAGVLHTSPTS 62 Query: 67 EAGNRGRPA-----VGLVVETEAWHY--LSLRISRGEIFLALRDLSSKLVVEESQEL--- 116 +G R + +GLV H+ SLR+ A+ D++ ++V ++ L Sbjct: 63 RSGRRAQQVTLARNLGLV---GGIHFGSRSLRV-------AVADVAHRIVADQRMPLPPD 112 Query: 117 -----ALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYE 171 L+ LL ++ +D L+ + ++ + +P +D G + + Sbjct: 113 HRADAGLERAALLLTEMVESVD-------SSLQEVLAVGVGVPAPVDVRTGQISTIGVLR 165 Query: 172 DVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITD 231 + + E LE+ G+PVY+ ++ + +AE FGA+RG + V+ + I H VG G++ + Sbjct: 166 GWDGICVPEVLERRLGLPVYVDNEANLGALAEVRFGAARGRQHVVYLRISHGVGGGIVLN 225 Query: 232 GHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH 291 G + H S + EIGH +D G C CGN GCLET +L SM + H Sbjct: 226 GEVFHGRSGTAGEIGHVTIDDNGPICRCGNRGCLETFVGAPVLL---------SMLTASH 276 Query: 292 GQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADIL 351 G LT+ + A +GD + +I+ G ++G A + NLF+P+ +++G L++A IL Sbjct: 277 GH-LTLPDVIARAQQGDPGCRRVISDAGRYLGVAAASVCNLFDPELVVVGGRLAEAGPIL 335 Query: 352 FPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 + + Q+ +P+ + + V +++ + + GA +V Sbjct: 336 MDPLRTVLAQRTVPSTAGPVEVVASELGSAAEVRGALVV 374 >UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3682C Length = 404 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 189/389 (48%), Gaps = 5/389 (1%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 Q+K N V I + G ++ L+ + L +I KI+ E+ E +L+++ ++ E+G Sbjct: 9 QLKNFNRRTVLGYIRRNGTATKAGLASVTGLTFMAIKKILAELQELNLIRDGQM-ESGGM 67 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEE--SQELALKDDLPLLDRII 129 GR AV V+ + + + I++ +AL +L +++ E S + ++ + + Sbjct: 68 GRKAVSYVINENYRYTIGIHINKFITGIALLNLRGQILAIERYSMDKEFENQNDFVTMLA 127 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 ++ + K E + I + PG +D E+G++ P + +PL E LE TG P Sbjct: 128 EAVELVIEKSGVKREDILGIGVGAPGPLDCESGVILTPPNMPMLDYLPLKETLEGRTGFP 187 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V++ D + AE + +R ++ V +D +G+G+I DG L + E GH Sbjct: 188 VFLNKDTNVIAFAEYWYRNNRDCSNLAYVEVDMGIGSGLIIDGKLNVGANCIAGEFGHIT 247 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRL-NQSMSSMLHGQ-PLTVDSLCQAALRG 307 +D G C CGN GCLE ++S ++L + +L NQ + H + LT++ + + + Sbjct: 248 IDINGPLCNCGNRGCLEAMSSGIAVLRMLGEQLENQKDHPLYHKRNALTIEDVFEMTDKK 307 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 DLL I+ +VG ++ ++N F+P+ I++G L + + F ++ D Q+ + Sbjct: 308 DLLTISILNRSAFYVGVAVSNLINTFDPEMIILGGILIQKYPMYFNIVQDVANQRKVKGA 367 Query: 368 SQHISVESTQFSNQGTMAGAALVKDAMYN 396 ++ S N G + +V D +N Sbjct: 368 KENYMAVSVLGENAGVIGAGEIVTDHFFN 396 >UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7D4_DYAFD Length = 407 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 102/394 (25%), Positives = 193/394 (48%), Gaps = 10/394 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 +VAE ID K ++ + Q G S +++L + S T IV +++ + Sbjct: 3 LVAEEPSSVIDIRKNRIRSSLLLHLYQNGDTSINKMAKLFHASIPSATGIVNDLMREGWI 62 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E A GRP V + ++ + L + I+R + L + DL ++L+++ + L D Sbjct: 63 TETGTGPA-RAGRPPVLYGLNSKKYLTLIMDINRHDTQLVIFDLHNQLILKRKVAIRLDD 121 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE-MPLG 179 L+ + + D F + +L I +++PG+I++ GI + + +PL Sbjct: 122 SANFLEELFASTDDFLKSNNISHSKLWGIGVSMPGLINSSQGI--NLTYLNLTPPGVPLV 179 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L++H +PV + +D A T+ E FG + V+ + ID VG G+I +G + + S Sbjct: 180 TYLKEHFDLPVCLFNDTKATTIGEHRFGYAVDKSQVLTINIDWGVGLGIIINGEVFNGAS 239 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------Q 293 E+GH QV P G C+CG GCL+TI S +++ A+ ++ +++L + Sbjct: 240 GFAGELGHIQVKPDGMLCHCGKVGCLDTITSAIALIRQAKEGIHSGRATILKQIVNNDLE 299 Query: 294 PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFP 353 L + +A GD + D+++ VG +G+ LA V+LFNP+ I++G L++A + Sbjct: 300 QLETSHIIEAVHAGDEFSIDLLSTVGTELGKGLATAVHLFNPEVIIVGGLLAEAGPFISN 359 Query: 354 VISDSIRQQALPAYSQHISVESTQFSNQGTMAGA 387 I +I + L + +S+ ++ ++ + G Sbjct: 360 PIEQAINKYCLSDFKNPLSIHISKLGSKARLLGT 393 >UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D168_HALOH Length = 396 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/381 (24%), Positives = 195/381 (51%), Gaps = 11/381 (2%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 K N + +I + GP+SR D+S+ L P ++T ++ +++E +LV E +I + GR Sbjct: 13 KGMNEKLILNIIRRDGPISRADISKKTNLTPPTVTNVINKLVEENLVLE-DIMGESSGGR 71 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHID 133 P + + EA++ + +S ++ L D K+ + ++ + +LD + ID Sbjct: 72 PPQLVRLNPEAFNIVVTHVSSNKLTGYLTDAYLKVSKKVVYDIERLEKQKILDLMFEVID 131 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQ 193 + + + + ++ + + G + G+ P + +P+ + +++ PV ++ Sbjct: 132 ELI---KSASQEVPALGVVVHGPVKAREGVSVFAPNI-GWRNVPIKKLVQERFKKPVCVE 187 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 +D+ A + E +G+ +G +++ + I + +G+ +I DG + S S E GHT VD Sbjct: 188 NDVRAMGLGEFYYGSGKGVDNLVFLKIGYGIGSAIIFDGKIFRGISDSAGEFGHTTVDIG 247 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTVDSLCQAALRG 307 G RC CGN+GCLE ++S ++I++ L S++ + +T D + +AA RG Sbjct: 248 GPRCNCGNYGCLEALSSENAIVKAVVKDLKAGRMSLVRELCDGNLEKVTPDHVYRAADRG 307 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D L+ ++ ++G +A ++N NP+ I+IG + KA + +I+ S+ ++AL Sbjct: 308 DELSLSVLQEAARYLGIGIANIINSINPKVIVIGGGIIKARLHIEEIINKSVEERALTNA 367 Query: 368 SQHISVESTQFSNQGTMAGAA 388 Q + ++ + GT+ GA Sbjct: 368 YQSCDIVFSELGDIGTLKGAG 388 >UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSG4_9ACTO Length = 393 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/360 (27%), Positives = 178/360 (49%), Gaps = 20/360 (5%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 G VSR +L++ L+ ++++IV E++ +V+E EI +G RP + L ++ +A + + Sbjct: 27 GLVSRTELAKRTGLSLPTVSEIVGELIGTGVVEEREIASSGGGRRPVL-LGLKPDAGYVI 85 Query: 89 SLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTS 148 ++++ + L DL++ +V + +A D +D ++ + R K+ + Sbjct: 86 GIKLTETRVVAVLTDLNAAIVQRATVAVANDD----VDTVVRTVAAVVKRFTAKVGPVYG 141 Query: 149 IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGA 208 + + L G+ID +G+V R Y D ++ L LE+ TG+PV + +D++ E FGA Sbjct: 142 VGVGLAGMIDRASGVV-RHATYSDWHDVDLAALLEKRTGLPVVVDNDVNTLVANEQWFGA 200 Query: 209 SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI 268 RG DV V I VG G++ DG L E GHT+V P G C CG GCLE++ Sbjct: 201 GRGVSDVAVVSIGRGVGLGMVLDGRLYRGAGGGAGEFGHTKVAPDGPVCACGARGCLESL 260 Query: 269 ASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAI 328 +I L + +S +++ A GD A+ + VG +G + Sbjct: 261 IGEPAI-------LTATGTS-------SIEQAVDLARGGDDAARAVFDHVGRTLGTAVGN 306 Query: 329 MVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA 388 +VNL NP+ I++ ++A+D+L P ++RQ + + V + ++ GAA Sbjct: 307 LVNLLNPKLIVLAGEGTRASDLLLPGFDTALRQAVFDGLQRDLEVVVDDWDDEAWAQGAA 366 >UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=Micrococcineae RepID=D1BAZ9_SANKS Length = 420 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 107/390 (27%), Positives = 186/390 (47%), Gaps = 26/390 (6%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G +++ N + I + G +++++L L+PA+I+ IV+E+L +V Sbjct: 5 GSQSSLREANRALIVDTIKKFGGLTQVELVAATGLSPATISTIVKELLGGGIVDTQSTTR 64 Query: 68 AGNRGRPA-----VGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL--KD 120 +G R + VGLV + H + +AL D +V E++ L + + Sbjct: 65 SGRRAQMVTLARRVGLVAGVQFGHR--------HLKVALGDFGRTVVAEQTMPLPVDHRS 116 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 D L DR + + R ++ L +I +T+P +D G + LG+ Sbjct: 117 DTGL-DRAALLVVELLERVGAPIDELLTIGLTVPAPVDVSTGEISVHGIMRGWDGQQLGQ 175 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L + PV + +D +A +AE GA RG +DV+ V + ++ GAG++ GHL + Sbjct: 176 VLSERLARPVVVDNDANAAALAEHELGAGRGYQDVVFVRMSYSTGAGIMLGGHLHRGFAG 235 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGH QVDP G C CGN GCL+T+ S ++L+L LR + HG LT+ L Sbjct: 236 TAGEIGHVQVDPRGDICRCGNRGCLDTVVSSTALLDL--LRGS-------HGD-LTLRDL 285 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 AL GDL + ++ G +G ++A + NPQ +++G L+ A +++ + ++ Sbjct: 286 VSRALAGDLGCRRVLADAGERIGGVVATLAGTLNPQLVVVGGELAAAGEVIVEPLRQAVL 345 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALV 390 + P + V + Q + GA L+ Sbjct: 346 RHVAPNTVAPLEVVPGELGEQAEVTGALLL 375 >UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepID=A8L0L3_FRASN Length = 401 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 97/364 (26%), Positives = 179/364 (49%), Gaps = 19/364 (5%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 PG ++ N V ++ + G +++ +++RL L+PA+++ IV E+ E+ +++++ Sbjct: 21 PGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRES---GDVDVR 77 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL----KDDL 122 A + GR AV + + + + L + +A+ DL+ +++ E+ ++ + ++ + Sbjct: 78 PAVSGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQAQEGI 137 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 R++ D R + + + LPG ID G V +P + Sbjct: 138 ATAGRLV---DDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGSSAILPGWVGVPAAAQM 194 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + G+PV + +D + +AE +GA +G RD+ + VG+G++ DG + G+ + Sbjct: 195 SERLGLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGLVIDGRVHRGGAGTA 254 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 EIGHT +D G C CGN GCLETI +LE LR + HG LTV + Sbjct: 255 GEIGHTTLDENGSVCRCGNRGCLETIVGTSVLLE--SLRTS-------HGPDLTVRGMID 305 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A+ GD +++ G +G A + NL NPQ I++G L+ A + L + + + Sbjct: 306 RAVAGDAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQVVHRF 365 Query: 363 ALPA 366 A+PA Sbjct: 366 AVPA 369 >UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0W0_HERA2 Length = 386 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 102/354 (28%), Positives = 177/354 (50%), Gaps = 15/354 (4%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 +Q K N V++ I G +SR+D++RL L P +++ V +LE LVQE+ + +G Sbjct: 11 EQSKLHNYRLVFKAIYDGGAISRVDVARLTNLTPTTVSSNVAILLEEELVQEVGLAPSGG 70 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 G+PA L V + H + L ++ E+ + +L + + Q LAL +L+++ Sbjct: 71 -GKPATLLSVLDDGRHLIGLDVAGHELRGTIINLRGA--IRQRQTLALNGG-NVLEQLYQ 126 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 IDQ + I I PG+I+T G+V + + L + L + G+PV Sbjct: 127 LIDQLLANTHSPV---LGIGIGAPGVINTTAGVVQQ-AVNLGWHNLALRDLLGKRYGLPV 182 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 Y+ +D +AE FG+ R A +++ + + +GAG+ +G ++ + EIGH V Sbjct: 183 YLANDSHVTAIAEHTFGSQRNAANLVVINVGRGIGAGIFINGRIVGGDAWGAGEIGHVVV 242 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 P+G C CG++GCLET+AS ++ L +L Q S QP T+ + A D Sbjct: 243 QPHGTLCRCGHYGCLETVASTSAL--LTKLDATQPQS-----QPWTIAEVQAALAANDPT 295 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 + ++ ++G +A +V L N Q I++ L++ + L + S+ Q AL Sbjct: 296 VRALVDEAAYYLGIAIANVVGLLNAQSIILAGSLAQLGNDLLQPLRRSLAQHAL 349 >UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 Tax=Thermobifida fusca YX RepID=Q47NL3_THEFY Length = 389 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 105/393 (26%), Positives = 196/393 (49%), Gaps = 25/393 (6%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 A+ PG ++Q N V + + G +++ +++R L+ AS++ IVR++ +V Sbjct: 5 AQVTPGSQAALRQANRERVIAALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMGVVS- 63 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 ++E + GR A + ++ +++ + + +AL + +++ EES + +D Sbjct: 64 --VRETSSNGRRARAVTLQRPPGVLVAIDFTHSRLTVALGNTDGRVLQEESIAYDVSED- 120 Query: 123 PL--LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMP--- 177 P+ + R + + + + + +A +PG +D G++ D+ MP Sbjct: 121 PVRGVRRAVWLTETLLTQARVDRSMVLGVAAAIPGPVDPATGLIG------DITSMPHWA 174 Query: 178 ---LGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHL 234 G L++ G+PV + +D + +AE GA+RG V+ V + H VGAGVI G L Sbjct: 175 GFNPGAELQERLGLPVSVDNDANLCALAELTEGAARGLEHVVYVKVAHGVGAGVILGGRL 234 Query: 235 LHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQP 294 + + EIGH +D G+ C CGN GCLET+ +L++ L Q + HG Sbjct: 235 FRGMNGNAGEIGHIGLDERGQVCRCGNRGCLETLVGTPYLLDM----LPQQ-GRVKHGAS 289 Query: 295 LTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPV 354 L VD L +AA GD + II GA +GR +A++VN+ NPQ +++G +++A ++L Sbjct: 290 L-VD-LLEAAQEGDPGCRRIIAEAGAALGRGVAVVVNMVNPQMVIVGGEIAEAGELLLDP 347 Query: 355 ISDSIRQQALPAYSQHISVESTQFSNQGTMAGA 387 + ++ AL + + + + + + GA Sbjct: 348 MRRAMELGALGNALTGLRLVTGELGERAALRGA 380 >UniRef50_Q0I2M8 NagC-like transcriptional regulator n=3 Tax=Pasteurellaceae RepID=Q0I2M8_HAES1 Length = 405 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 109/409 (26%), Positives = 187/409 (45%), Gaps = 36/409 (8%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 ++ G +YRLI+Q +SRIDLS+L+QLAPA+IT + RE++E LV E ++ NRG Sbjct: 12 LRMKQLGKIYRLIEQFEEISRIDLSKLSQLAPATITSLTRELIEKKLVIERAVQNTENRG 71 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 RPAVGL V W L ++ + L +L + +E L L D L + + Sbjct: 72 RPAVGLCVSPFYWQSLCATLTYDHFDILLCELDGTTIAQEVYPLDLSDLSSLEQMLPCYF 131 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 + F + KL R + +I + G + +G + R+ E + L + +P+ + Sbjct: 132 EDFLSKVGTKLSRPITFSIAVAGKLHHLSGFLQRLG--EIELNVDLTSLFAGYFDIPIIV 189 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 W +AE+ G+ G DVI + ID + V++ G +L + + + I V Sbjct: 190 TEYFETWLLAESTLGSVIGYDDVIFLQIDDVINLSVLSKGVILQSDHKTCMNIDQIIVPR 249 Query: 253 -YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL--------------TV 297 Y + H + EL + +++ ++ Q + + Sbjct: 250 LYPMQDKINQH-----------LFELERYQIHNQLTYKAFCQFIDLYYPNNNLINTTEKI 298 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 + LC+ A D LA +I+ + + IL+ +VNLF+P+KI+ S L + I+ Sbjct: 299 NFLCKKAQLQDPLALEILANIADIIAYILSNLVNLFSPEKIMFTSRLLSVKHVFLNQIN- 357 Query: 358 SIRQQALPAY---SQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRL 403 Q L Y S+ V ++Q+ AA +K +Y+GSLL+ + Sbjct: 358 ----QRLAHYLHNSKICEVMTSQYEWNSHEVIAAAIKQKIYDGSLLVYM 402 >UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS614 RepID=A1SG81_NOCSJ Length = 400 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 116/404 (28%), Positives = 192/404 (47%), Gaps = 31/404 (7%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAH-LVQELE 64 Q G + +++ N V I+Q G +SR DL R L+ ++++ +V ++L+ LV+ L+ Sbjct: 3 QGGSLGELRAANLALVISTIEQTGALSRADLMRRTGLSRSTVSSLVVQLLDQGVLVERLD 62 Query: 65 --IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 G GRP + L + + + + +AL S +V+E S L + DD Sbjct: 63 RGTPYKGRSGRPPILLELAALTGVVAGIDVGHRHVRVALARPDSTIVLERSVALDV-DDS 121 Query: 123 PL--LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHR-MPFYEDVKEMPLG 179 P +DR+ + +D+ +L + + +PG +D + +P + ++ P Sbjct: 122 PRESMDRVATLLDELLAESGHELSDVRGAGLGIPGPVDRGGRMTSGILPTWRGLQ--PAA 179 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 E L + TGV + +D E +GA+ G RDVI V +GAG+I DGHL+ + Sbjct: 180 E-LAERTGVIARVHNDAHLGARGELAYGAACGHRDVIYVKASTGIGAGLIVDGHLVTGAT 238 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 E+GH QVD G C CG+ GCLET S ++EL Q ++ LTV Sbjct: 239 GIAGELGHVQVDVNGVMCRCGSRGCLETEVSGPKLVELLQPAYDEQ---------LTVPR 289 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + + A GD A + G +GR+LA + N+ NP+++++G A P + I Sbjct: 290 ILELAQSGDAGATRALNDFGRRIGRVLANIANMLNPEQVVVGGGFGAA-----PALQAGI 344 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRL 403 R AL YSQ + + T+ G AL + A G++ + L Sbjct: 345 R-DALDRYSQPTTAAAI------TVLGGALGERAEVMGAIAVAL 381 >UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZML3_9FIRM Length = 410 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 106/392 (27%), Positives = 184/392 (46%), Gaps = 26/392 (6%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 KQ N G +++LI +RI+LSR LA ++T IV E +E +V+E E + GR Sbjct: 35 KQFNRGLIFQLIATGTCNTRIELSRRTGLAKTTVTNIVAEFMEKGIVKECEEELTEVCGR 94 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHI 132 + L V +A + + + R I L L ++ E+ E L D+ L+ I Sbjct: 95 NPIILKVADQAPKIIGILVFRTNIQAVLCSLDMQIFRTETIEFGELTGDI-LIQNAFELI 153 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 D R ++ + + I I G +D NGI+ P + VK +P+ EA+++ +PVY Sbjct: 154 D----RMMEEEKNILGIGIASIGPVDIRNGIILNPPRFYGVKHVPIKEAIQKKYNLPVYF 209 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 HD + +AE LFG + +D + + + + +G+G + G + H+ E+GH ++ Sbjct: 210 DHDNNCAALAEKLFGIGKAEQDFLLLAVSNGIGSGFVCGGEVFHSHRGFETELGHVSINC 269 Query: 253 YGKRCYCGNHGCLETIASV----DSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 G +C CGN GCLE AS + + ++ L L + +H +P D L + Sbjct: 270 KGLQCSCGNRGCLEMYASSYVVREKLKKITGLNLPYADYFKIHDRPEVEDIL-------E 322 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 + +DI G L ++N+ P+ I++G + + I + + Sbjct: 323 EMIQDISAG--------LVSIINMLQPEMIVLGYDGIDWPEDYVKKLEILINDRKIAQDG 374 Query: 369 QHISVESTQFSNQGTMAG-AALVKDAMYNGSL 399 +I V+ F Q + G AALV ++++ G L Sbjct: 375 WNIPVKKAYFGKQAQLVGAAALVVNSIFKGEL 406 >UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGH9_NAKMY Length = 386 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 102/353 (28%), Positives = 173/353 (49%), Gaps = 22/353 (6%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 + + + A+ RL+ GP SR DL+R +L+PAS+T+IVR + ++ LV E E G Sbjct: 11 LSEGSRAALVRLLVH-GPASRADLARRLRLSPASLTRIVRTLEDSGLVVESETTVPQRMG 69 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 RP+ + V +A H + +++ GEI L D+ S ++ + L P +DRI I Sbjct: 70 RPSQAMEVNVDAVHLVGIKLLAGEINLVRTDMRSTVLGHRTIPLQTVPLDPAIDRITEAI 129 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPF--YEDVKEMPLGEALEQHTGVPV 190 + + ++ I+L G +D + +V PF +EDV PL + + TG+P Sbjct: 130 ----LAEVAVDPAVGAVGISLAGPVDPSSDMVTHSPFLGWEDV---PLARLVSERTGLPT 182 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 I++D+ A T AE FGA+ GA D + V I +G GV+ L+ + +IGH + Sbjct: 183 VIENDVRALTAAEHWFGAAAGATDFVLVTIGAGIGCGVVIGDRLVDGNTGGAGQIGHLPI 242 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 P G C G+ GC + LA + S LH LT L A +G+ + Sbjct: 243 TPSGPLCERGHRGCARSY--------LASSAMVGQASMALHRPDLTYAELVSLAHQGERV 294 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A ++ G +G ++ ++ + P K++I S + P++ D ++++A Sbjct: 295 ASRVVRDAGYALGTLIGLVTAITAPSKVII----SGEGVTMVPLVMDVVQERA 343 >UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ47_9CLOT Length = 401 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 102/393 (25%), Positives = 185/393 (47%), Gaps = 15/393 (3%) Query: 17 NAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAV 76 N AV I P+ R +++RL L+ ++ KI E E+ L+ E K G+P Sbjct: 13 NKEAVINTIRDNSPIFRAEIARLTGLSIPTVMKITDEFKESGLIYE-SGKRTSEVGKPPK 71 Query: 77 GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIISHIDQF 135 L +A + + + + + L DLS+K+++ E P +L++ I I + Sbjct: 72 LLSFVPDAKYIIGVDVGTTHVGAVLMDLSAKILLREWAPTHDGHTFPQVLEQTIQCIQKI 131 Query: 136 FIRHQKKLERLTSIAITLPGIIDTENGIVHRMP---FYEDVKEMPLGEALEQHTGVPVYI 192 + ++ I + +PG+I E G + P ++E PL E +PV + Sbjct: 132 LDASSEYAGKILGIGVGVPGLISVETGKIILSPAIGWHEGNFLAPLKERFR----LPVVV 187 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 + + A M E FGA RG + + + + +G+ ++ + + + E GH +D Sbjct: 188 DNVVRAMAMGELWFGAGRGLENFFCIGLGYGIGSSIVIGKQIYSGSTGTSGEFGHMTIDK 247 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML----HGQPLTVDS--LCQAALR 306 G C CG +GCLE IAS ++I + A+ ++ +SM+ HG +++ + AA Sbjct: 248 SGPLCDCGCYGCLEAIASANAISKQARFAISNGANSMMFDIIHGNLNDINAKVVFDAAKA 307 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 GD LA I+ V ++G ++ ++NL +PQ I++G +S+A D L + D + + LP Sbjct: 308 GDSLANTIVNQVTVYLGIAISNVINLLDPQLIILGGGVSQAGDFLLNPLLDEVSRHVLPV 367 Query: 367 YSQHISVESTQFSNQGTMAGAALVKDAMYNGSL 399 HI + S A L+K+ + +G + Sbjct: 368 KEPHIVISSLGEDAVAIGAATFLLKEYVESGKV 400 >UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 Length = 320 Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 87/275 (31%), Positives = 143/275 (52%), Gaps = 8/275 (2%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYED--VKEMPLGEA 181 ++++I S ID + K+ + I I PG++D + P D KE+ LG+ Sbjct: 42 VINKIKSMIDNVLNQAGLKITEIEGIGIGFPGLMDRDKKTTLYAPNLGDEWKKEVLLGKE 101 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE+ VPVY+++D++ AE L GA RG + +I V + +G+G++ +G L Sbjct: 102 LEETFNVPVYLENDVNLIAWAEWLVGAGRGTKTMICVALGTGIGSGIVLNGKLWIGAHGM 161 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML----HGQ--PL 295 E GHT V P G C CGN GC+E IAS I + A+ L Q +S++ +G + Sbjct: 162 AGEFGHTTVLPDGPVCGCGNRGCIEAIASGTGIEKYAKSILPQYPNSLIWELCNGNLDEV 221 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 TV + QAA RGD LA DI G ++G LA V++ +P+KI+IG ++ + + + Sbjct: 222 TVKIIYQAAERGDKLAVDIFNYAGYYLGIALANYVHIIDPEKIVIGGGVANVREYIGKPM 281 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 + ++ LP++ ++ + GAAL+ Sbjct: 282 KEEFYKRVLPSFRDKVTFSWAELGEDAGGIGAALL 316 >UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=C7M5N9_CAPOD Length = 402 Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 188/370 (50%), Gaps = 12/370 (3%) Query: 35 DLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISR 94 DL + + ++TK+V E++E +V + E RP + + ++ + ++ + IS+ Sbjct: 36 DLGKELNFSVPTVTKMVGELIEDGIVMDFGKMETPGGRRPNIYGLNQSSGY-FIGVDISQ 94 Query: 95 GEIFLALRDLSSKLVVEESQELALKDDLP--LLDRIISHIDQFFIRHQKKLERLTSIAIT 152 + + L + L+ +E +++ ++ P +R+ I+ F +++ SI I Sbjct: 95 KRVHIGLINFKGDLI-DEQMDISFEEAHPHERFERLCEIIEDFMSHTVVPKDKILSIGIN 153 Query: 153 LPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGA 212 + G ++ + G + FY D E PL E E+ G+ V I +D A E + G + Sbjct: 154 ISGRVNPQTGHSYSF-FYFD--ERPLTEMFEEKLGIDVSIDNDSRAMAYGEYIKGRVQAE 210 Query: 213 RDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVD 272 +++I V + +G GVI +G L + S E GH C+CG GCLET AS Sbjct: 211 KNIIYVNVGWGLGLGVIVNGQLYYGKSGFSGEFGHITAFENEILCHCGKKGCLETEASGS 270 Query: 273 SILELAQLRLNQSMSSMLHGQP-----LTVDSLCQAALRGDLLAKDIITGVGAHVGRILA 327 ++ +L+ SS+L Q +T++ + AL+ D+LA ++I VG +G+ +A Sbjct: 271 ALYRKFLEKLHNGQSSLLTQQKENEDEITLNDIIDVALQEDILAIELIEEVGNTLGKHVA 330 Query: 328 IMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGA 387 ++NLFNP+ ++IG L+ A D L + +I++ +L ++ S++ ++ ++ + GA Sbjct: 331 GLINLFNPELVIIGGTLANAGDYLILPLRSAIKKYSLNLVNKDSSIKVSKLGDKAGLLGA 390 Query: 388 ALVKDAMYNG 397 +L+ + + G Sbjct: 391 SLLARSKFIG 400 >UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZW2_HALOH Length = 383 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/385 (24%), Positives = 184/385 (47%), Gaps = 27/385 (7%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +K+ N + LI+ GP+SR +++ + L PA+++ IV+++L+ LV+E E+ G Sbjct: 1 MKKINQQTILELINNKGPISRAEIAEITGLTPATVSNIVKDLLKMDLVRETRQGES-RGG 59 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQ-------ELALKDDLPLL 125 R + L V E + + L GEI L +L+ K++ + E LK + + Sbjct: 60 RKPILLEVNPEGAYVIGLEWGIGEIKAVLLNLNKKVIKTIKKQVDSFKPEWFLKTTVTIF 119 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY--EDVKEMPLGEALE 183 + + +++ +++ + I + G++D + G+ P + E++K +G+ L+ Sbjct: 120 EEVTGYVEN--------PDKVFGLGIGIHGLVDPDEGVSLYAPHFGWENIK---IGKLLK 168 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 Q +P+ + +D+ +AE G + I + +G+ ++ G LL+ Sbjct: 169 QELQIPIMLDNDVRMMALAEKW----EGRDNFIFINTGPGIGSAIVIKGELLYGRDFGAG 224 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E GH + G C CGN GC+E + SV++++ L + +S H + L Sbjct: 225 EFGHMTIVEDGALCSCGNRGCIEALVSVNNLVREYNDSLPEHIS--FHDIKREWNLLIDL 282 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A A II G ++G+ + +VNL NP+ ++IG A D++FPVI + + + A Sbjct: 283 AREEKSRAYSIIEKAGVYLGKGIGNVVNLLNPEAVVIGGDFLLARDLIFPVIKEQVLETA 342 Query: 364 LPAYSQHISVESTQFSNQGTMAGAA 388 L S+ + + T F + GA Sbjct: 343 LKVPSRDLEITGTAFGEKVGAIGAG 367 >UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9WJ57_CHLAA Length = 408 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/355 (28%), Positives = 178/355 (50%), Gaps = 6/355 (1%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 + N V RLI +LG VSR DL+RL L +++ +V E++E LV E + G GR Sbjct: 14 RDVNLRLVLRLIYELGAVSRADLARLTNLTRTTVSDVVGELIERGLVIETGLATGGGIGR 73 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHID 133 + L V + ++ ++ + AL L + S+ + + L+ + +D Sbjct: 74 TPMLLSVAEWSRPVAAISVNADSVEGALVSLRGNVGRRISRSIQGQTGADALNTLQETLD 133 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQ 193 + Q + L I +T PG+I+ +G++ R E ++PLG+ L + G+PV + Sbjct: 134 ELI---QTANQPLLGIGVTTPGLINASSGMIVRAVGLE-WADLPLGQLLHERYGLPVKVV 189 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 +D +AE LFG RG +++ + I VGAG++ +G L EIGH Sbjct: 190 NDSQCLALAEHLFGEWRGVANLVVLKIGKGVGAGIVLNGQLYAGEGFGAGEIGHLAFTAN 249 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML--HGQPLTVDSLCQAALRGDLLA 311 G C CGN GCLET+ D++L A+ + + +S+L + L++ + + A GD +A Sbjct: 250 GLLCKCGNRGCLETVLGSDALLHQARTAIAANPNSILAAYASDLSLGRIAEGAAMGDPVA 309 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 + +IT A G +A +++L + + +LI ++ + ++ + Q+ALPA Sbjct: 310 QHVITTAAAATGAAVATIISLLSVRHVLITGRITAFGETFAELVRREVAQRALPA 364 >UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR-2 RepID=C6D7F4_PAESJ Length = 396 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/390 (25%), Positives = 188/390 (48%), Gaps = 28/390 (7%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 +++ +++ N V RL+ + SR +L++ + L ++IT I+ E++ +V E + E Sbjct: 11 NLEDVQEMNRSLVIRLMRRREVCSRAELTQDSGLNQSTITNIINELISWGIVVETGVIE- 69 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDR 127 G +GR ++G+ + E + + +R++R I +AL DL + + + D +R Sbjct: 70 GKKGRRSIGIKLNCEPYKIIGIRLARKSITVALYDLGGSEYKRQQIPINMADGSTNAFNR 129 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 + I + + +I + PG + + G + M ++ +++ + E L Q Sbjct: 130 MKELIRDMM--QSNAVGNVIAIGVVTPGPLLRDEGRIGLMTYFPGWEKINIQEELMQEFE 187 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDV-IQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 +PVY++HD A +A FG + V I V VGAG++ +G + EIG Sbjct: 188 LPVYMEHDAKAGALAHWWFGTPLQEQGVMIYVAAGQGVGAGIVIEGKVFRGSLGMAGEIG 247 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSIL-----ELAQLR-LNQSMSSMLHGQPLTVDSL 300 H +D G++C CGN GCLE S ++L E A L+ + Q + + G+ T +++ Sbjct: 248 HMSIDYKGQQCECGNRGCLELYCSTSALLQTLKKEHASLKSIWQELKEVKSGE--TREAV 305 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 QAA ++G L ++N FNP +I++G +++A D+L + I+ Sbjct: 306 RQAAW---------------YLGFGLVNIINTFNPDRIILGDEMAEAGDLLLDTVKSVIK 350 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALV 390 + LP +++E + G+A+V Sbjct: 351 EHVLPDVYSQLTIELASDDMDTMLVGSAIV 380 >UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKJ0_BACSK Length = 391 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 187/390 (47%), Gaps = 21/390 (5%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 + +K N V+RLI + P+SR D+++ + L A+++ +V +++E V E+ ++ Sbjct: 7 ETMKDMNKSTVFRLIQRHAPISRADIAKRSGLNKATVSALVAQLIENQFVYEIGTGDSSG 66 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR V L A H +S+ I + + DLS K + + L K+ +L + Sbjct: 67 -GRKPVLLYCNDRASHAISVDIGVNGLLGIITDLSGKTIAKREMALTSKEFNIVLANTEA 125 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPF-YEDVKEMPLGEALEQHTGVP 189 I+Q + I ++PGI+D++ I+ +E+V + ALE +P Sbjct: 126 IIEQLIHEAPPSPYGICGITASVPGIVDSKGNILLAPNLGWENVD---IKTALEHTFKLP 182 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V + ++ +A + E +G + + + + +G G I DG L + E GH Sbjct: 183 VVVINEANAGALGEKQYGVGKPYSAISYISVSIGIGTGQIIDGKLFTGANGFAGEFGHMS 242 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 +D +GK+C CGN GC E +S ++LE+A + +N+ + ++ + + AA G+ Sbjct: 243 IDRHGKQCRCGNQGCWELYSSEKALLEIAAINMNR--------RSISFEEVLAAAETGNQ 294 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ---QALPA 366 A D VG +G L M++ NP+ I+IG+ +K L P I I + + LP+ Sbjct: 295 AALDAFATVGHSLGIGLVSMIHSMNPEAIIIGNRFAK----LKPYIQIPIEETLAKHLPS 350 Query: 367 YSQH-ISVESTQFSNQGTMAGAALVKDAMY 395 Y Q + + ++ + + G +L+ + + Sbjct: 351 YYQKAVKLLFSELGQEAPLLGGSLLATSQF 380 >UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWZ1_9CLOT Length = 394 Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 101/397 (25%), Positives = 184/397 (46%), Gaps = 23/397 (5%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 +N + ++++N V L+ + G SR +LS+ + L ++IT I+ +++A +V E Sbjct: 5 QNGEKKLKDLRESNIALVINLMRKFGICSRAELSKASGLVQSTITSIIDSLIKAGIVIET 64 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--D 121 G RGR ++G+ + TE L +R++R LA+ D+ +L E + KD D Sbjct: 65 G-SLVGGRGRRSIGIRLNTEKLIVLGIRVTRSSYTLAIIDIFGELKNLEKHSIT-KDLED 122 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPG--IIDTENGIVHRMPFYEDVKEMPLG 179 + +RI+ F +++ +K + + LPG +I+ + + + K Sbjct: 123 PSVFERILEDASTFLLKNDQKP---VGVGMALPGPYLINEDTSLFLTNQGW---KSFTFT 176 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASR-GARDVIQVVIDHNVGAGVITDGHLLHAG 238 + E +PV+++ D + M E FG S G + V VGAG++ DG + Sbjct: 177 KKFESRLHLPVFVEQDSNVGAMGEWWFGNSEIGQGTKVFVSTGDGVGAGIVVDGKIQRGA 236 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + EIGH ++ G +C CGN GCLE S +IL+ A+ L L + Sbjct: 237 LGAAGEIGHMSINFEGPQCQCGNKGCLELYCSEKAILKAAK---------CLSKPILNFE 287 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 SL G+ +I+ G +A + LFNP +++G K D ++ + Sbjct: 288 SLVTEYRAGNSAVTEIVNRAAEMFGIGIANIAYLFNPGVVVVGGSYKKLGDSFLDQVNRT 347 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAG-AALVKDAM 394 +R+ P + Q+I ++ + + + G AA+V D + Sbjct: 348 VRRHIYPLFYQNIGLQFSALEHDSCLIGIAAVVFDRL 384 >UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDS7_9FIRM Length = 326 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/306 (26%), Positives = 152/306 (49%), Gaps = 6/306 (1%) Query: 87 YLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFFIRHQKKLER 145 Y ++ + +I+ L D ++ E A + ++D+++S +DQ + K E+ Sbjct: 6 YAAIDLGGTKIYSVLADSKGDILAHTRLETRAREGSETVMDQMVSSVDQLLEKSGGKKEQ 65 Query: 146 LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEAL 205 L I + + G D E ++ P ++ + L+ G+PV ++D +A + E+ Sbjct: 66 LAKIGVCIAGFYDWEKRLLIHSPNMAGWSDVDVESRLQDKLGIPVIAENDANAAALGESR 125 Query: 206 FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCL 265 GA +G+ D++ + + +GAG+ITDG + E GH V P G C CG GCL Sbjct: 126 RGAGQGSGDMVFITVSTGIGAGLITDGKIYRGSRGFAGEAGHMVVKPDGPLCGCGRRGCL 185 Query: 266 ETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALRGDLLAKDIITGVGA 320 ET+AS +I +A ++ ++L +T + AA + D LA++++ G Sbjct: 186 ETVASGTAIARIANEQMQNGRKTILSEITAQNSKVTAPDVFAAAKKKDPLAQEVLQGAIH 245 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSN 380 ++G L +VNL NPQ I+IG +++A D LF + I + A+P + +++ + Sbjct: 246 YLGIGLVNLVNLLNPQVIVIGGGVAEAGDDLFVPLRQIIAEHAVPPAAASVTLRKAELGV 305 Query: 381 QGTMAG 386 + +AG Sbjct: 306 EAGVAG 311 >UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YJZ1_NOCDA Length = 396 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/389 (25%), Positives = 185/389 (47%), Gaps = 14/389 (3%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 A PG +++ N V ++ + G ++ +L+R L+ AS++ IVR + A V Sbjct: 4 AAATPGSQSALRRANERRVVDVLRREGTRTQAELARATGLSAASVSNIVRGLRAAGTVL- 62 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 +++ + GR A + + + +++ + + +A+ D ++ E + D Sbjct: 63 --VRDTSSNGRRAKAITLVRQPGAVVAVDFTADSVRVAVGDSDGNMLAREEIGYDVASDA 120 Query: 123 PLLDRIISHI-DQFFIRHQKKLERLTSIAITLPGIIDT---ENGIVHRMPFYEDVKEMPL 178 R + + + +R + ++S+ ++PG ID E G + +P + + P Sbjct: 121 ERGVRRAAWLAETILLRSRVDRGTVSSVVASIPGPIDPGTGEVGGISCLPRWAGFR--PA 178 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 E L + G+ V ++D + +AE GA GA V+ +V++ VGAG++ G L Sbjct: 179 RE-LTERLGLEVLAENDANLAVLAEQHRGAGVGAEHVVHLVLNDGVGAGIMMSGQLFRGA 237 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + EIGH +DP G C CGN GCLET +L++ L Q+ P+ + Sbjct: 238 GGTAGEIGHIALDPRGHVCRCGNRGCLETFVGASYLLDM----LPQNTDVARGPDPVRIP 293 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + AAL GD ++ II G +G+ AI+ NLFNP ++++G L++A D+L + S Sbjct: 294 DMVAAALEGDPGSRRIIAEAGTALGQGTAIVANLFNPDRVVVGGELAQAGDLLLDPMRRS 353 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGA 387 + +L + + + + ++ GA Sbjct: 354 MELGSLSSALDRLELVPSALGRDASLYGA 382 >UniRef50_D1NUM3 Transcriptional repressor in the Rok family protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUM3_9BIFI Length = 417 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 103/384 (26%), Positives = 183/384 (47%), Gaps = 19/384 (4%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 GPVSR +++ +L PA+I+KI +++EA L++E + R R ++GL + A+H Sbjct: 45 GPVSRATIAKALELTPAAISKITAKLIEAGLLEETGDMQGEGR-RRSIGLRMNKSAFHVA 103 Query: 89 SLRISRGEIFLALRDLS-SKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLT 147 S++ +R + + + DL+ ++L ++E + LD + S +++ K R+ Sbjct: 104 SVKFARTLVCIGVYDLAGNQLSMQEITAVEHTQIPETLDTVHSMLEKLL----AKDRRII 159 Query: 148 SIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFG 207 +I + +PG G + ++ + + + VPV+I+ D A ++ LFG Sbjct: 160 AIGMAVPGPYLRAVGRTAMVSSMQEWRAVNFIDEFSHSLSVPVFIEQDARAGVLSYRLFG 219 Query: 208 ASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLET 267 R + ++ VG GVI ++ + EIGH +D G+ C CGN GCLE Sbjct: 220 QGDADRHLAYYLLGEGVGLGVIDGDETINGELGAATEIGHVSIDVNGRSCECGNVGCLER 279 Query: 268 IASVDSILELAQLRLNQS-----MSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHV 322 S SI E LN+S SM H + ++L + A G+ A ++ +G +V Sbjct: 280 YCSAVSIHE----ELNESGIVADSESMTHREA--CEALFRLAASGNSQAVAMVQRIGTYV 333 Query: 323 GRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQG 382 G ++N FNP +I++G +S D+L I + + LP + ++ S Sbjct: 334 GYGAVTIINTFNPSRIIVGDIVSGGGDLLLSAIRRVVDARILPELNARTTIVLADASADA 393 Query: 383 TMAGAA--LVKDAMYNGSLLIRLL 404 + GAA V+ + N S +R L Sbjct: 394 STKGAAGVAVEHFLANPSAFVRGL 417 >UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=C5BZR0_BEUC1 Length = 393 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 102/386 (26%), Positives = 178/386 (46%), Gaps = 24/386 (6%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G +++ N + + Q G +++++L+ L+ A+I+ IV+E+L A +V+ Sbjct: 9 GSQSSLREANRSLIVDTVKQFGGLTQVELAGATGLSAATISTIVKELLGAGVVEVRPTSR 68 Query: 68 AGNRGRPA-----VGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 +G R + VGL + H S+R+ L D S +V E+S L + L Sbjct: 69 SGRRAQMVTLARRVGLAAGVQVGHR-SMRV-------VLGDFSHTVVAEQSLPLPHEHLL 120 Query: 123 PL-LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 LDR I R ++ L + + LP +D G++ L Sbjct: 121 DTGLDRASLLIADLLERVGSPIDELVGVGLGLPAPVDGATGMISVRGVMRGWDGEHLAHV 180 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 + + PV++ +D + +AE GASR D + V + +GAGV+ +G + + + Sbjct: 181 MSKRLARPVHVDNDANLGALAEHTLGASREHLDSVYVRASYGIGAGVVLNGAVYRGYAGT 240 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH QVDP G C CGN GCL+T+ D++ LA LR + HG LT+ + Sbjct: 241 AGEIGHVQVDPQGAICRCGNRGCLDTVVGADAL--LASLRAS-------HGN-LTLRDVI 290 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A GD ++ G +G ++A + NPQ +++G L++ +IL + D++R+ Sbjct: 291 ALATDGDRGCARLVADAGEAIGTVVAGLCAAVNPQVVVVGGELAETGEILLGPLRDAVRR 350 Query: 362 QALPAYSQHISVESTQFSNQGTMAGA 387 L + V + + + + GA Sbjct: 351 GVLRNQIAPLEVVAAELGPRAEVLGA 376 >UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYI5_HALOH Length = 322 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/312 (25%), Positives = 162/312 (51%), Gaps = 8/312 (2%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFFIRHQKKLE 144 +Y+ + + +I AL D K+V ++ A K + ++ I+S ID E Sbjct: 4 YYVGVDLGGTKILTALADARGKIVAKKKLPTEARKGEEKVIQNIVSSIDAVLQEKGLSRE 63 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 + ++ + PG ++T+ GI++ P + + + + LE+ TG+PV +++D +A + E Sbjct: 64 DVITLGVGSPGPLNTQEGIIYLAPNL-GWRNVHIKDILEEETGIPVILENDANAAALGEK 122 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 FGA + ++I + + +G G+I + + H + E+GH ++P G C CGN GC Sbjct: 123 WFGAGQDVDNLIYITVSTGIGGGIIINKKIFHGINDGAGEVGHMVIEPGGPVCGCGNRGC 182 Query: 265 LETIASVDSILELAQLRLNQSMSSML----HGQPLTVDS--LCQAALRGDLLAKDIITGV 318 E +AS +I ++ + + ++ +++L G P +D + +AA +GD +A+ I Sbjct: 183 FEAVASGTAINKMGREAVKENKATLLMELSGGDPEKIDGSLIARAARQGDEVARKIWDKA 242 Query: 319 GAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQF 378 G ++G LA ++N+FNP+ I++G + A D++ + S++ AL + + + + Sbjct: 243 GYYLGIGLANLLNIFNPEMIILGGGVMNAGDLIMEPMKKSLKDHALESAFNSVEIRQAEL 302 Query: 379 SNQGTMAGAALV 390 N + GA V Sbjct: 303 GNDTGVIGAVAV 314 >UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31B1F Length = 404 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 100/370 (27%), Positives = 177/370 (47%), Gaps = 14/370 (3%) Query: 24 LIDQL---GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG-RPAVGLV 79 L+D+L G +SR +L+R L+ ++++ +V ++ LV E E+ AG +G RP V L Sbjct: 21 LVDELRRAGLISRAELARRTGLSRSTVSTLVADLQAQGLVAEREVDGAGPQGGRPPVLLS 80 Query: 80 VETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-LDRIISHIDQFFIR 138 +E A L + + + + + DL+ ++ + + + + P + ++ + Q Sbjct: 81 LERAAGVALGIDFGKRHVRVIVSDLAHTVLADVERPMETEQSAPEGFEVAVALVHQALAD 140 Query: 139 HQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISA 198 + + + +PG ID G V + E + G+ V +++D + Sbjct: 141 AGVEQTDVIGAGMGVPGPIDISTGEVGSSAILPGWIGLRPREDMSARLGLAVRVENDANL 200 Query: 199 WTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCY 258 +AE +GA R +D + V + +G+G++ G L EIGH+ VD G C Sbjct: 201 GALAELTWGAGRDTQDFVYVKVASGIGSGLVLGGQLYTGAGGIAGEIGHSMVDERGAVCR 260 Query: 259 CGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGV 318 CGN GCLETIAS I EL LR + G LT++ + A GD ++ +I Sbjct: 261 CGNRGCLETIASTRQIREL--LRPAR-------GADLTIEEVIAHAREGDRASRRVIGDA 311 Query: 319 GAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQF 378 +G ++A + N+ NP K+++G LS A D+L + D + + A+PA H+ + Sbjct: 312 ARAIGVVVAQVCNVLNPAKVIVGGDLSAAGDVLLDPLRDEVSRHAVPAAGGHVEIVPGVL 371 Query: 379 SNQGTMAGAA 388 + + GAA Sbjct: 372 GRRAEVLGAA 381 >UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales RepID=C6Y2I3_PEDHD Length = 408 Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/371 (23%), Positives = 185/371 (49%), Gaps = 12/371 (3%) Query: 27 QLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL-EIKEAGNRGRPAVGLVVETEAW 85 +G + DL + L+ IT ++ +++ L+++ +++ G R GLV ++ Sbjct: 34 NIGNATIADLCKELNLSAPKITNLLSDLIADGLIKDYGKVESTGGRKPNLYGLV--PDSA 91 Query: 86 HYLSLRISRGEIFLALRDLSSKLV-VEESQELALKDDLPLLDRIISHIDQFFIRHQKKLE 144 ++ + I + I + L +L L+ + E L ++ L+ + I+ F E Sbjct: 92 FFIGVDIKQNHINIGLSNLQKNLIRITEKIPYHLDNNKESLEALCKLINDFIGELTIPKE 151 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 +L + I L G I+ G + ++ E PL + +E G+ V++++D + E Sbjct: 152 KLLGLGINLSGRINYATGYSYSFFYF---NEEPLSKIIESKIGIRVFLENDSKSMAYGEF 208 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 G ++V+ + +DH +G G++ +G L + S E GH + C CG GC Sbjct: 209 SAGVVEAEKNVLFLNLDHGIGLGILVNGQLYYGKSGYSGEFGHIPMFDNEIICRCGKKGC 268 Query: 265 LETIASVDSILELAQLRLNQSMSSMLH-----GQPLTVDSLCQAALRGDLLAKDIITGVG 319 LET AS ++ + + RL++ SS+L + L ++ + AA+ D+LA ++I +G Sbjct: 269 LETEASGWALTRMFKERLSEGSSSILSQNNTDTEDLKMEDIINAAIHDDVLAIELIAKIG 328 Query: 320 AHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFS 379 ++GR +A+++NLFNP+ +++G L+ + + I +I + +L +Q +++ ++ Sbjct: 329 DNLGRGIALLINLFNPELVILGGSLAATEEYIRLPIKSAINKYSLSLVNQDTNLKMSKLG 388 Query: 380 NQGTMAGAALV 390 + + GA L+ Sbjct: 389 ERAGIIGACLL 399 >UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA78_BREBN Length = 401 Score = 133 bits (335), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 97/394 (24%), Positives = 186/394 (47%), Gaps = 14/394 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G + I++ N + I Q GP+SR D+++ ++P ++T V E++ +V E Sbjct: 3 RTGDLKLIQELNRFIILDTIRQFGPISRSDIAKKQGISPTTVTSAVNELIRDGMVAEDGT 62 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 E+ GR + + + + + I+ I +A +L + ++ + +K L + Sbjct: 63 GES-KGGRKPIMVRFCPDGKFLIGVSITNTAITIAEMNLEA--ATKQKKIYPVKAGL-VS 118 Query: 126 DRIISHI-DQF--FIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 D II ++ D F++ + R I+I PGI+D +G++ R + ++PL + Sbjct: 119 DLIIQYVLDSIGDFLQSVDDVSRCLGISIIAPGIVDAASGVI-RFNSKLRLHDVPLKDMA 177 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E+ G+ ++ +D +A +AE FG A +++ V + VG+G++ +G + Sbjct: 178 EERFGLNTWLDNDANAIALAEKNFGGGLNADNLLFVTVGEGVGSGLVVNGSIFRGSRGGA 237 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLT 296 E GHT VD G RC CGN GCLE + +I + + +++ +T Sbjct: 238 GEFGHTTVDRSGMRCDCGNVGCLENYVAWPAIYSGILSAVTRGKETLVMDLADGDMTRIT 297 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 D QA +GD + +DI+ + +++ + +VNLFNP I++G + + +LF I Sbjct: 298 FDVFRQALHQGDQVCQDIVDEIASYMSIGIVNLVNLFNPSLIILGGEMIRDNQVLFERIQ 357 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 + QA+ + + T + AA V Sbjct: 358 KQVMAQAMGTMVEGLEFRPTVLGADFEVKAAAAV 391 >UniRef50_D1BUQ4 ROK family protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUQ4_XYLCX Length = 393 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 105/389 (26%), Positives = 183/389 (47%), Gaps = 26/389 (6%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G ++ N A+ R + GP + DLSR+ L+ A+++ IV +EA ++ + Sbjct: 10 GSQTALRGRNTAAIVRALTVTGPQLQADLSRVTGLSRATVSNIVALEVEAGRLRAERVLR 69 Query: 68 AGNRGRPAVGLVVET--EAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD-LP- 123 G GL+V E W + I R + + RD +++ V + +E+AL LP Sbjct: 70 DGR-----WGLLVSRAPEDWVVAGIDIGRSHLRVVARDAAARTVGD--REIALDPGHLPD 122 Query: 124 -LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 L R +D+ + R+ + I LP + + +V + E M + E Sbjct: 123 VTLARASELLDEVVAQAGLSRSRVRKVGIALPASVGPDGAVVQQSVLRE-WSGMNVAERA 181 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGAR-DVIQVVIDHNVGAGVITDGHLLHAGSSS 241 G+ + +D + A A A RG R ++ + + +GAG++ L + + Sbjct: 182 AGVLGIETVVDNDANLGAFAHA---AGRGGRGTLVYLKVASGIGAGIVVGDRLYRSTTGL 238 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 + EIGH QV G+ CYCG+ GCLET+ASV +++ + +HG+ T+D + Sbjct: 239 VGEIGHVQVVDGGQTCYCGSRGCLETLASVRTVVADFE---------RVHGRAATLDDVL 289 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A D +A I+T G +GR+LA+M N+ +P +++G PL+ L I S+R+ Sbjct: 290 AAIAADDPVALRIVTEAGDALGRVLAVMCNILSPDVVVVGGPLTPVGAPLLDAIVASVRK 349 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALV 390 +ALPA + + ++GA L+ Sbjct: 350 RALPAAISRTEFAVSDSEPRAEVSGACLL 378 >UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1E2_JONDD Length = 402 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 171/378 (45%), Gaps = 34/378 (8%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 PG ++++N + I Q G +++++L+ L+ A+++ IV+E+ +VQ Sbjct: 8 PGSQSSLRESNRTRIIDAIKQFGGLTQVELAGATGLSAATVSNIVKELTTLGVVQTSPST 67 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISR--GEIFLALRDLSSKLVVEESQELALKDDLPL 124 +G R A H R G + LR + L + S L LPL Sbjct: 68 RSGRR------------AQHVTLARTPGLVGAVQFGLRHMRVALA-DSSGSLLSDHQLPL 114 Query: 125 ---------LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE 175 LDR I + L +A+ LP ++ +G++ Sbjct: 115 GADHRADAGLDRAALLIADMMETFDAESAELQGVAVALPAPVEHSSGLITSPGIMRGWDN 174 Query: 176 MPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLL 235 + + + + G PVY+ + + + E GA+ GA+ + + + +GA +I +G L Sbjct: 175 VAVAHVMSERIGKPVYVANSSNMGALGELRQGAAAGAQHTLYIQVGQRIGAALIINGELF 234 Query: 236 HAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL 295 + S E GHT DP G+ C CGN GCLET+A + +LE LR++ + + Sbjct: 235 WGANGSAGEFGHTTTDPDGQICRCGNRGCLETVAGGNVLLE--ALRVSHGV--------M 284 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 T+ + + A GDL I G +G A + N+FNP+++++G L+ IL + Sbjct: 285 TLKDMMRYARDGDLGCIRAIADAGRAIGLAAANLCNVFNPERVVVGGDLAHTGSILLDPL 344 Query: 356 SDSIRQQALPAYSQHISV 373 ++I + +LP+ ++ I++ Sbjct: 345 RETIERFSLPSTAECITI 362 >UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n=1 Tax=Oceanobacillus iheyensis RepID=Q8EL07_OCEIH Length = 402 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/393 (22%), Positives = 193/393 (49%), Gaps = 11/393 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G++ I++ N + I + GP+SR D+++ ++P ++T V E++E +V E + Sbjct: 3 RTGNLKLIQELNRSLILDTIRKKGPISRSDIAKKLTISPTTVTTAVSELIEGKIVYEDGV 62 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 + N GR V L + + + I+ +I +A +L K V ++S E+ + + Sbjct: 63 GNS-NGGRKPVLLRFNPDTHSIIGVSITNSKIKIAEMNLEGK-VKKKSVEITNNEQGEDI 120 Query: 126 DRIISHIDQFFIRHQK-KLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 +++ + FI+++K L+ ++I PGI+++E G + + + +PL + +E Sbjct: 121 IKLVIETLKTFIKNEKVNLDYCEGVSIITPGIVNSEEGCISYNS-HLGLYNIPLKKMVES 179 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 G+P ++++D++A+ AE+ FG+ ++ + I +G+G++ + + S E Sbjct: 180 TIGLPTFLENDVNAFVSAESYFGSYNHYNSILFLTIGDGIGSGIMINDSIYKGYKGSAGE 239 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSI-LELAQLRLNQSMSSMLHG------QPLTV 297 IGHT V P G +C CGN GC+E + SI + + + +++ +T Sbjct: 240 IGHTTVVPGGIKCKCGNSGCVENYVNWPSIHSRIVSAIITKGRDTLIKNYIGNDFTKITP 299 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 D A D L K+I+ + ++ + ++ +P+ I++ + + + + Sbjct: 300 DMFVLAIRENDELCKEIMDDMVNYLSITIVNAIHTLSPELIILSGAIIHGNQVFIDQLQE 359 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 ++++ LP + ++ +ST + GAA V Sbjct: 360 EVKKRLLPIIREDVNFQSTSLGPDFDLLGAASV 392 >UniRef50_C9R4P6 Mlc n=2 Tax=Pasteurellaceae RepID=C9R4P6_AGGAD Length = 409 Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 102/394 (25%), Positives = 189/394 (47%), Gaps = 14/394 (3%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 G +YRLI+Q +SRI+LS+L+ LAPASIT + R ++E L+ E + NRGRPA+ L Sbjct: 15 GKIYRLIEQFEEISRIELSKLSGLAPASITSLSRSLIEKRLIMEKTSRNTDNRGRPAIAL 74 Query: 79 VVETEAWHYL--SLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFF 136 V W L +L R EI L+ D +++E+S KDDL LD+ + + F Sbjct: 75 CVSPFYWQALCATLMEDRFEIILSELD---GVIIEQSVFPLQKDDLECLDKFLVKSVKQF 131 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 + L R + ++T+ G +D +NG + ++ + + L + +P+ I Sbjct: 132 LAETHSLARPITFSVTVGGELD-KNGYLIKLGCTK-FAHLDLKSLFTPYFNIPILIAEYF 189 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 W +AE+ G DV+ + +D + V+++G LL + + I H V + Sbjct: 190 KTWLLAESTLGNVINCDDVLFLQLDDEINLSVLSEGELLFSREQDKININHLIVPRLNEL 249 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS-----LCQAALRGDLLA 311 NH L + ++ + Q + ++ + + +S LC+ D A Sbjct: 250 QALINHD-LPEVERYQVQHQVTHRAIAQFIDALYPNRVFSNNSEKMNFLCEQIQLKDKNA 308 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 II + + IL +V++F+ +++++ S L + D L ++ ++ + S + Sbjct: 309 LRIIEHITDCLAYILMNLVHIFSARRVMLNSSLLQLKDFLLEQLNRKLKSYLVDNIST-V 367 Query: 372 SVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQ 405 SV + ++ + A+ +K +Y+GSLL L++ Sbjct: 368 SVIAGKYEWNSPIVAASAIKQGIYDGSLLTSLVK 401 >UniRef50_C0ZA86 Putative glucokinase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA86_BREBN Length = 328 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/255 (33%), Positives = 139/255 (54%), Gaps = 11/255 (4%) Query: 142 KLERLTSIAITLPGIIDTENGIVHRMPFYEDVK--EMPLGEALEQHTGVPVYIQHDISAW 199 L R+ I I GIIDT+ +V F ++ ++P+G L++ GV V + +D +A Sbjct: 64 NLSRIRGIGIATAGIIDTQRQMV---IFASNLNWSDVPIGAILQERFGVAVQLINDANAA 120 Query: 200 TMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYC 259 +AE FG++RG +D+I V + VGAG+I+ G L+ S E GH +DP G C C Sbjct: 121 AVAEWAFGSARGTKDLIYVTVSTGVGAGIISGGRLITGVGDSAGEFGHISLDPEGPLCVC 180 Query: 260 GNHGCLETIASVDSILELAQLRLNQSMSSML---HGQPL---TVDSLCQAALRGDLLAKD 313 GN GCLE S ++ A+ +L Q +S L +G L T + +AA+RGDLL+ Sbjct: 181 GNRGCLENYTSGLALASRAREQLLQGATSSLLVENGNDLSRITAKEVGEAAVRGDLLSMT 240 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 ++ G ++G L +++LFNPQ I++G + K +L + IR++++ + S+ Sbjct: 241 LMKEAGYYLGVGLTNLIHLFNPQVIVMGGGVMKNGQLLLAEAKNVIRERSISRMANQASI 300 Query: 374 ESTQFSNQGTMAGAA 388 + T + + GAA Sbjct: 301 QLTTIGAEAGVLGAA 315 >UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJQ5_CATAD Length = 390 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 107/375 (28%), Positives = 186/375 (49%), Gaps = 17/375 (4%) Query: 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREML-EAHLVQELEIKEAGNRGRPAVGL 78 AV L+ + GP+SR ++ + +L+PA+IT+ R +L E LV+E AG GRP+V L Sbjct: 16 AVLALLARRGPLSRAQIAEMLELSPATITQGTRRLLAEGLLVEEAPRPSAGGGGRPSVPL 75 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLV--VEESQELALKDDLPLLDRII-SHIDQF 135 + + H + ++++ + L + +V + + A D + L +I S I++ Sbjct: 76 SLVPGSAHTIGIQVAHEHVTGVTSRLDATVVHSFRHAFDPASPDAVETLTALIRSEIEEI 135 Query: 136 FIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHD 195 +++ L + + +PGI++ E G + M +PL L + GVPV++ +D Sbjct: 136 ----ERRGLPLAGVGVAVPGIVEPETGTLS-MSVRLGWTGLPLAARLREALGVPVFVDND 190 Query: 196 ISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGK 255 ISA T AE L+G D + I +G G++ DG + + E GH V P G Sbjct: 191 ISAVTAAERLYGPGADEADFLLAAIGQGIGLGMVLDGAPYRGAAGAAGEFGHMPVQPDGP 250 Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDII 315 +C CGN GCLE++ S +++L A + +L + +D L AA GD A ++ Sbjct: 251 QCVCGNRGCLESLVSTEALLRTAH------EAGILPAES-DLDDLGTAARHGDPAAVQLL 303 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 +GR LA +VNL P+ ++I ++ D+L + +++ LPA + +E Sbjct: 304 HNAATLLGRALAGVVNLLGPRSVIIIGEITAIWDLLDDPLHEALLDHLLPAV-RDTRIEV 362 Query: 376 TQFSNQGTMAGAALV 390 + ++ A AA V Sbjct: 363 RPWHDEVIAASAARV 377 >UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PY53_CATAD Length = 422 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 110/384 (28%), Positives = 187/384 (48%), Gaps = 32/384 (8%) Query: 31 VSRIDLSRLAQLAPASITKIVREMLEAHLVQEL-EIKE-------------AGNR-GRPA 75 +SR DL R LA +++ ++ +++ A LV+E +++E G R GRP Sbjct: 36 LSRADLVRHTGLARTTVSSVIFDLISAGLVRESPDVRENSDTAAAAAAGAAPGQRTGRPP 95 Query: 76 VGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD-LPLLDRIISHIDQ 134 + L +E EA + + L + + + D+ + ++ LA+ DD LD + I + Sbjct: 96 LLLRLEPEAAYAVGLDVGHDHVRAIVTDVVGTPRWDRTEALAVDDDPRRALDTAVRLIAE 155 Query: 135 FFIRHQKKLERLTSIAITLPGIIDTENGIVHR---MPFYEDVKEMPLGEALEQHTGVPVY 191 ++ + + + +D G +H MP + + + L + TG+P Sbjct: 156 AVKDTAVPPHKILGLGLGIACPVDKTTGGLHAEGIMPGWVGTRPA---DDLAERTGLPTQ 212 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 I +D +A +AE FGA+R A +V+ V + +GAG++++G +L E+GH V+ Sbjct: 213 IINDANAGVLAERRFGAAREATNVVYVRLAAGIGAGMMSEGRMLLGHHGLAGELGHVMVE 272 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 G C CG+ GCLET+AS +I L L +S GQP L + RGD A Sbjct: 273 LNGAVCRCGSRGCLETVASPAAIAGL----LARSW-----GQPADSIDLPELLRRGDRGA 323 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 ++ G VGR L+ V L NPQ ++IG L++A + L I ++R+ + + +Q + Sbjct: 324 LRVVEDAGEAVGRALSAAVQLLNPQLVVIGGDLAEAGEALLEPIRRTLRRGTMGSLNQRL 383 Query: 372 S-VESTQFSNQGTMAGAALVKDAM 394 V ST + G AALV D++ Sbjct: 384 RIVPSTLGDSAGVRGAAALVLDSV 407 >UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5U1_SORC5 Length = 408 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 105/377 (27%), Positives = 182/377 (48%), Gaps = 5/377 (1%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 ++ N V L+ + GP+SR +L+RL+ L +++ I+ E+L++ V+++ + G GR Sbjct: 15 RELNRSLVLDLVQEHGPISRTNLARLSGLTKPTVSAIIEELLDSGSVRDVGTESRG--GR 72 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHID 133 PA L ++ +L + I + +A+ D +L Q L+D + I+ + Sbjct: 73 PARLLEFNDDSAAFLGIEIGVEQTAVAVADARGRLRARLEQPTVLRDPHRTVRDIVELLP 132 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQ 193 + +RL LPG+I+ +G+ P + P+ L + + V + Sbjct: 133 KVLQLSGVPRKRLRGACAVLPGLIERPSGVCVLAPNL-GWERFPVRAELSRALRMQVPVY 191 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 + A +AE GA+RG + + + VGAG++ DG L EIGH +V Sbjct: 192 NLPQAAAVAEGELGAARGHASYVWIYVGLGVGAGLVADGRLFFGMQGYSGEIGHCRVADD 251 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKD 313 G C CG GCLET ASV ++ A+ +S +P V ++ AAL GD A+ Sbjct: 252 GPPCGCGRRGCLETFASVMALRRAAEAASARSPQLAALARPHAVSAVASAALAGDESARA 311 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 I GA + R +A+++NL NPQ I++G L A DIL + D + + A+ + V Sbjct: 312 IFHDAGAQLARGIAVLLNLLNPQLIVLGGELLAAPDILLAGVRDGLPRHAV--RGADVPV 369 Query: 374 ESTQFSNQGTMAGAALV 390 ++ ++ + GA L+ Sbjct: 370 VASPLGSEAGVLGALLL 386 >UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2IDS2_BEII9 Length = 428 Score = 131 bits (329), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 102/407 (25%), Positives = 191/407 (46%), Gaps = 24/407 (5%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL-- 63 Q G + I+ N V I + PVSR + + L+ +++ ++ +L+ L+ E Sbjct: 2 QTGDTELIRAINRFHVLDTIRRFEPVSRAAIGKRTHLSRVTVSSLIATLLQEGLIHEESD 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E +G RGRP L + A + + ++S ++FL + +L + + S L +P Sbjct: 62 ETTNSGTRGRPTNLLGLNPNAAYVVGAKLSMHQVFLIVTNLRADPLARLSLPLHPHQLVP 121 Query: 124 LLDRIISHIDQ----FFIRHQKKLERLTSIAITLPGIIDTENGIVHRMP-FYEDVKEMPL 178 D I++ +D+ KL ++ + I LPG ID++ GI H P + K + L Sbjct: 122 --DAIVALLDEGVRSVVALAGLKLGQIAGLGIGLPGFIDSKAGISHWSPILAPEPKPVAL 179 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 + + + G+ V I++D + T+AE FG + + + V+++ +G G+ DG L Sbjct: 180 ADMVRRRLGLAVTIENDANLLTLAERWFGECQENDNFVVVMMEAGIGMGLFLDGELYRGQ 239 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT-- 296 E GH+++D +G RC CG +GC+E + +IL A+ + + G T Sbjct: 240 HGMGTEFGHSKIDRHGPRCRCGQYGCIEAFTADYAILREAEKIIRTPAAH--EGADDTAE 297 Query: 297 ----VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 V ++ + A G++ + I G +G +A ++N+ +P KI+I ++A D++ Sbjct: 298 AETRVATVVRLAREGNVALRQIFATAGEILGLGIANLINIIDPAKIVISGSGTRAVDLIE 357 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQG----TMAGAALVKDAMY 395 P + ++ L + F +QG A+LV A+Y Sbjct: 358 PALRAAVAANTLAVLQNRCEI---IFHDQGDEVWARGAASLVLQALY 401 >UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TWQ2_9RHOB Length = 405 Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 91/328 (27%), Positives = 152/328 (46%), Gaps = 20/328 (6%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN--RGRPAVGL 78 V + I G +SR D++R +PA++T +L+A L++E + N RGRP V L Sbjct: 21 VLQCIRSAGTISRTDIARALDSSPATVTSACGALLDAGLIREERRMPSENVQRGRPRVML 80 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLV--VEESQELALKDDLPLLDRIISHIDQFF 136 + EA+ L+++R I + + D + E + D L+ + +D Sbjct: 81 QINGEAFAVAGLKVAREAIVVMIVDFRGDEIGSFVSPLEASCMDPDGLVQEVRRALDAAC 140 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 RH R+ +++ +PG ++ E G +H + + + +H P ++ +D Sbjct: 141 ARHGLDTARIAGLSLGIPGFVNGETGFMHWSSSVTE-RNVDFAPLFRKHLPCPTFLDNDA 199 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 + AE LFGA RG + + V ++H VG G+I +G L E+GH +V G Sbjct: 200 NLVAKAEHLFGAGRGLSNFLVVTLEHGVGMGIILNGELYRGERGCGAELGHMKVQFGGAL 259 Query: 257 CYCGNHGCLET----IASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 C CG GCLE A V Q +S+ +LH AA GD LA+ Sbjct: 260 CQCGQRGCLEAYVGDYALVRDTSTGQQSDAAKSIQDILH-----------AARNGDRLAR 308 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILI 340 +++ +G LA +VNLF+P+ I++ Sbjct: 309 EVLDRASQILGVALANLVNLFDPEHIVL 336 >UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788127 Length = 390 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 103/395 (26%), Positives = 182/395 (46%), Gaps = 22/395 (5%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +K+ N + I Q PVSR +S+L L A+++ +V+E+ HLVQE+ E+ Sbjct: 11 VKKINTSIILDTIRQHAPVSRAKVSKLTGLNKATVSNLVQELCSNHLVQEIGPGESSGGR 70 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 +P + L+ +A + + + + +I L DL +++ EE L + ++ I Sbjct: 71 KPQL-LLFNGQAGYAIGVELRVKQITAVLTDLEGRILAEEDTALEAHGVESVTRLMVGMI 129 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 + + I + +PG++D + ++ D+ +PL E LE G+PV I Sbjct: 130 HGLMRQAPPSPYGIIGIGVGVPGMVDGDGTVLFAPNLGWDM--VPLQEQLELELGLPVTI 187 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 ++ +A E FGA R AR ++ + +G+G+I +G L E GH ++ Sbjct: 188 DNEANAGAQGELRFGAGRDARHLLYISAGSGIGSGIIINGELYKGARGYAGESGHMSIEA 247 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G+ C CGN GC E AS S + ++ S ++H +L K Sbjct: 248 EGRECSCGNRGCWELYASEKSYDGKDAVLPSRRTSELVH--------------HAELGHK 293 Query: 313 DIITGVGAHVGRILAI----MVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 D I +GR L I +VN FNPQ ++IG PLS A + + + Q+ LP + Sbjct: 294 DTIRHF-EELGRYLGIGITNLVNGFNPQSVIIGGPLSDARAWIEETLQQVVAQRTLPYHR 352 Query: 369 QHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRL 403 + + + + ++ TM GAA + + G + + + Sbjct: 353 ERMEIRFAELGSRSTMIGAAYSAISQFLGPVRVSM 387 >UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY97_9BACL Length = 399 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 105/376 (27%), Positives = 190/376 (50%), Gaps = 11/376 (2%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 IK+ N V I Q P+SR D+S L A+++ +V E++++HLV E+ E+ Sbjct: 10 IKKMNKTIVLDTIRQRQPLSRADISAAIGLNKATVSSLVSELIDSHLVTEIGPGESSGGR 69 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 +P + L+ A + + + I ++ L DL ++ E+ L+ +L++I I Sbjct: 70 KPTL-LLFNRSAGYAIGIDIRVNDLLAVLVDLEGHVLQEKLVPLSDFSPEHVLEQIRQTI 128 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 QF + + + I I +PG++D ++ ++ D ++ L E L G ++I Sbjct: 129 RQFKEQLPESPYGIVGIGIGVPGLVDDKSRVISAPNL--DWNKVELYEPLASEFGANLHI 186 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 ++ +A + E LFGA R A+++I + I +G+G+I G L S+ E+GH + Sbjct: 187 DNEANAGAIGEKLFGAGREAQNLIYLSIGIGIGSGIIVGGELYRGTSNFSGEVGHMTIAE 246 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CGN GC ET+AS ++L+ A + + + ++ + Q A GD A Sbjct: 247 NGPLCRCGNRGCWETLASEKALLDRA--------AKLWGDKHPDLEEMIQLAHSGDSRAI 298 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 +++ +GA +G LA +VN+ NP+ I+IG+ LS A D++ + +I ++L + + Sbjct: 299 ELLNEIGAQLGVGLANLVNILNPELIVIGNRLSLAGDLIQDAMLRTIENRSLSYHRKKSG 358 Query: 373 VESTQFSNQGTMAGAA 388 V + T GAA Sbjct: 359 VAFANLGIRSTALGAA 374 >UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG91_9CLOT Length = 403 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/365 (24%), Positives = 174/365 (47%), Gaps = 13/365 (3%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 G +R L+ L+QL A++T IV + ++ LV+E+ GN+GR ++G+ + + + L Sbjct: 29 GICARAHLANLSQLKQATVTNIVSDFIDWGLVKEVGFL-VGNKGRRSIGISINNDDFGVL 87 Query: 89 SLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTS 148 ++R++R + + +LS +L+ ++ EL + + I H IR + ++ + Sbjct: 88 AIRLARKNYTVGIFNLSGRLLDKKRVELDVNQPPRVTFEAIIHEAGELIRSSES-RKIIA 146 Query: 149 IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGA 208 I + +PG + G + M E+P+ E L+ +PV+++ D +A +A+ Sbjct: 147 IGMAIPGPYSEKRGRIELMTGVLGWNEIPIQEKLQDIFKIPVFLEQDANAGALAQYWHND 206 Query: 209 SRGARDVI-QVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLET 267 V+ + + VGAG+I +G LL E+GHT + G RC CGN+GCLE Sbjct: 207 EDYKNGVVVYIAVGQGVGAGIINNGELLKGCIGVAGEVGHTSICYNGPRCACGNYGCLEN 266 Query: 268 IASVDSILELAQLRLNQSMSSMLHGQ-PLTVDSLCQAALRGDLLAKDIITGVGAHVGRIL 326 S + + ++ +L + + Q GD + DI + + Sbjct: 267 YCS--------SIAFTKEVNRVLRPEIEYNFRQVSQLLRDGDQVVTDIFLDACDKLSVGI 318 Query: 327 AIMVNLFNPQKILIGSPLSKA-ADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMA 385 ++N FNP I+IG +S ++ + +++++ LP ++++ + SN Sbjct: 319 VNIINSFNPSVIVIGDEMSHILPSVMLERVKSNVKERVLPEIYANMNITMSVVSNDSMAH 378 Query: 386 GAALV 390 GAA+V Sbjct: 379 GAAIV 383 >UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PV61_9ACTO Length = 436 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/389 (24%), Positives = 184/389 (47%), Gaps = 24/389 (6%) Query: 31 VSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSL 90 +SR++L+ L+ +I+ I R +L+A LV+E +++ G+P L +E + + + Sbjct: 38 LSRVELAAATGLSGQAISNITRRLLDAGLVREAGRQKSAGLGKPRTLLELEPTGQYAVGV 97 Query: 91 RISRGEIFLALRDLSSKLVVEESQELALKD--DLPLLDRIISHIDQFFIRHQKKLERLTS 148 + + + L DL+ +++ + D D+ L+ I + ++ +R+ Sbjct: 98 HLDPAVVTVVLLDLTGQVIARRRAQTPAADGPDV-LIAGIAATVEDVIAEAGVPRQRVVG 156 Query: 149 IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGA 208 + I PG ID + G+V P +PL +AL TG+PV + D++A AE G Sbjct: 157 VGIAAPGPIDVDRGVVVDPPNLTAWHLVPLRDALRDRTGLPVLLDKDVTAAASAEKWAGG 216 Query: 209 SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI 268 G + + +GAG++ ++ SS++ EIGH VDP G C+CG GC+ Sbjct: 217 PNGRGSFVFFYLGTGIGAGLVIGDEVVRGSSSNVGEIGHVIVDPEGPLCFCGRRGCVGES 276 Query: 269 A--------SVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGA 320 + +VD+ + + L+ H + +LC AA G A++I+T + Sbjct: 277 SRPRYLVQQAVDAGVVARGIDLDDR-----HAVDVAFTALCTAATGGPGAAREIVTALAE 331 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR---QQALPAYSQH-ISVEST 376 + +++ + NL + ++++ G P D L P D+IR ++ S H +V T Sbjct: 332 RIAKVVEDIANLLDLERVVFGGP---HWDRLAPFFGDAIRETLEERFLVRSVHPFTVTGT 388 Query: 377 QF-SNQGTMAGAALVKDAMYNGSLLIRLL 404 ++ G + A+LV D ++ + + LL Sbjct: 389 ALGADVGAVGAASLVLDHTFSPNPSVLLL 417 >UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIH3_THET1 Length = 418 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/384 (25%), Positives = 185/384 (48%), Gaps = 5/384 (1%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +++ N V ++ + P+SR L+ + L A+++ ++ E+ A LV E+ I+ + G Sbjct: 13 VRELNLSIVLNVLREHSPLSRASLAAITGLNRATVSSLINELTRAGLVWEVGIEATDDVG 72 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISH 131 RP L ++ A + + + I LA+ D SS+++ + EL K +L Sbjct: 73 RPGRLLELDPHAGRIIGMEVGVDFIALAIADFSSQIIWKRWVELTDGKSPEEVLGLAADL 132 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 I + K+ ++ + + +PG++D G + P +++P+ E+ VY Sbjct: 133 IQEGVELTDKEYGQVLGLGVGVPGLVDVPRGHLLFAPNL-GWRDVPVRSMFEERFPFTVY 191 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 ++++ + + E+ FG +RG V+ + VG G++ G ++ E+GH + Sbjct: 192 VENEANMAALGESYFGVARGYNCVLYISAGVGVGGGIVLGGQIMRGAMGFSGEVGHMTMV 251 Query: 252 PYGKRCYCGNHGCLETIASVDSILE--LAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 G C CGN GC ET+AS +++ L LR S LTV ++ +AA GD Sbjct: 252 EDGPICGCGNRGCWETLASESALVRRMLEALRRAGETPSWARDDHLTVPTVLEAARAGDR 311 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 LA+ ++ V VG +A +VN+ NP+ +++G LS D++ P I +++ + L Q Sbjct: 312 LARGVLNEVARDVGLGIANLVNVLNPEIVVLGGMLSMGGDLMLPTIRETLEHRGLRWLVQ 371 Query: 370 HISVESTQFSNQGT-MAGAALVKD 392 + +E + + G A V D Sbjct: 372 PLRLELAALGRESCVLGGIATVYD 395 >UniRef50_B4D7W0 ROK family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7W0_9BACT Length = 359 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/265 (30%), Positives = 131/265 (49%), Gaps = 5/265 (1%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 L++ I+ I I H + + ++ + LPG ID+ NGIVH + E+PL L+ Sbjct: 89 LIEEILGVIAALRITHPE----VAALGVGLPGFIDSLNGIVHELTNVPGWDEVPLRRILQ 144 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + TG+P I++D A E +GA++G R V+ + + VG ++ DG L + Sbjct: 145 ERTGLPTIIENDAKAMAYGEFKYGAAKGCRFVLCITLGTGVGGALVLDGRLYRGAQLAAG 204 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E+GH +D G N G LE I A +L + + + T L +A Sbjct: 205 ELGHASIDYRGTPGLYKNPGDLEMFVGNHRIAARAS-QLYKVAGRNVPVEECTPYDLEKA 263 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD +AK + VG +G L M+ L NP I+IG ++KA D+LF I +IR++ Sbjct: 264 ARNGDPVAKQMWENVGLELGCALVNMIWLLNPDAIVIGGGVAKAGDLLFGPIQRTIRERT 323 Query: 364 LPAYSQHISVESTQFSNQGTMAGAA 388 LP ++Q++ V N+ + G A Sbjct: 324 LPLFNQNLRVVPAALGNEAGIIGNA 348 >UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASC3_STRRD Length = 397 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/336 (28%), Positives = 162/336 (48%), Gaps = 19/336 (5%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 + +++ N + R + GP SR +LS L L+ AS++ + +++ ++ E + E+ Sbjct: 9 VRDLRRGNRAVLLRTLYFEGPTSRHELSGLTGLSAASVSNVTGDLIADGIIVEAGLVES- 67 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDR- 127 + GRP V L V+ E + + + + + + L DL + L + D+ L+ R Sbjct: 68 DGGRPRVLLRVDPEFGYAIGVDVGETHVRVELFDLDMNERAKADYPLRPGRHDVDLVVRH 127 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDT-ENGIVHRMPFYEDVKEMPLGEALEQHT 186 I+S ID R+ + I +PGI+++ ++H F D +PLG L T Sbjct: 128 ILSGIDAVLAAGGVDPARVLGVGIGVPGIVESGPEALIHAQTFGWDA--VPLGTLLRAGT 185 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 +P+Y+ + AE FGA RG R I +I GA +ITDG +SS E G Sbjct: 186 SLPLYVDNGAKTMGQAELWFGAGRGTRHTIVALIGSGAGASIITDGIAYRGANSSAGEWG 245 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 HT++ G+ C CG GCLE +SIL+ A L S+ + + + L ++ Sbjct: 246 HTKIMMGGRACRCGGRGCLEAYIGAESILDRAGL------SAEIADEQAVLAELVRS--- 296 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGS 342 +I ++G LA ++NLFNP++I+IG Sbjct: 297 ----GGPVIDETADYLGAGLANLINLFNPERIVIGG 328 >UniRef50_B9JL48 Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JL48_AGRRK Length = 345 Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 122/244 (50%), Gaps = 5/244 (2%) Query: 149 IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGA 208 I I PG +D E G+V P E+PL + L +PV +++D +A + E +GA Sbjct: 66 IGIGAPGPLDPEAGVVIAAPTLTGWNEVPLADILSSRFQLPVRLENDANAAAVGEWRYGA 125 Query: 209 SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI 268 RGAR ++ V + +G GVI D +LH EIGH + G+RC+CG GC E + Sbjct: 126 GRGARSIVFVTVSTGIGGGVIADSRILHGRRGLAAEIGHMTITNEGERCFCGAVGCFEAV 185 Query: 269 ASVDSILELAQLRLNQSMSSMLHGQPLTVD----SLCQAALRGDLLAKDIITGVGAHVGR 324 AS ++ A R +S SML D + AA GD LA +++ +G Sbjct: 186 ASGTALGRQATARTRRSDGSMLRKLSANADVTGRHVVDAARNGDALALELLNAEARWLGI 245 Query: 325 ILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTM 384 +++L++P +++G +S D+L I +I +A+PAY + + + + Q + Sbjct: 246 GFTNLLHLYSPDVLVMGGGISHGFDLLHDTIMATICDRAMPAY-RDVPIVAAQLGRHAGL 304 Query: 385 AGAA 388 GAA Sbjct: 305 IGAA 308 >UniRef50_A5UW86 Glucokinase n=2 Tax=Roseiflexus RepID=A5UW86_ROSS1 Length = 340 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 128/236 (54%), Gaps = 7/236 (2%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMP-FYEDVKEMPLGEAL 182 +++R+ + Q + LE + +I I +PG+ID E G+ +P + +PL + Sbjct: 54 VIERMAALAAQVCTQANVALEHIPAIGIGVPGVIDLERGVTVLLPNLPSGWRNVPLAANI 113 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 TG P I +D A+T+AEA FGA R A V+ + + +G G+ +G L + Sbjct: 114 THLTGRPTAIINDARAFTLAEATFGAGRDASSVVGITLGTGIGGGIAFNGRLHLGIDGTA 173 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLT 296 E+GH +DPYG RC CGN GCLET AS SI + + Q M++ + +T Sbjct: 174 GEVGHMTIDPYGPRCGCGNRGCLETFASGPSITAMGLRAVAQGMTTQIGALVDYDLNKIT 233 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 + +AA GD +A++I+ G+++G +A ++ +F+P++++IG LS+ + L Sbjct: 234 PGVIARAAENGDTVAREILQRAGSYLGIGIANLITIFSPERVVIGGGLSRLGEWLL 289 >UniRef50_Q9K992 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9K992_BACHD Length = 386 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 186/376 (49%), Gaps = 12/376 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 IKQ N V + I + P+SR +S L +++ +V E++ +LV E+ E+ Sbjct: 10 IKQMNKQIVLQTIRKEAPLSRAQVSLTTGLNKGTVSSLVAELIADNLVYEVGPGESSGGR 69 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 RP V L+ + +A + + + I+ + L DL ++ + L +K+ + +++ I Sbjct: 70 RP-VMLMFQNKAAYAIGINIAVNYLSGVLTDLVGNVIEKVEWSLHVKEFDHVNQQMVQLI 128 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 +Q + I + +PGI++ E ++ + +E+PL + LE+H +P+ + Sbjct: 129 EQLMKAAPPSTYGIIGIGVAVPGIVNEEGDVLFAPNL--NWREIPLKKQLEEHFQLPIAV 186 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +++ +A + E +FG + + ++I I +G+G+I L E+GH ++ Sbjct: 187 ENEANAGALGEKVFGKGKESENMIFFSIGIGIGSGIIFGNSLYRGKGGYSGEVGHMSIET 246 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CGN GC E AS ++L+ + L+ + LT+D L + A +G+ A Sbjct: 247 NGPLCTCGNKGCWELFASEKAVLQQGE---------ALYEEVLTLDDLFEKARKGEQTAI 297 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 D+ +G ++G +A M+N NP+ +++G+ + K L + ++ +AL +++ + Sbjct: 298 DLFQKIGVYLGTGIANMINALNPELVVVGNRMVKGRPWLEHSLKQTVADRALSFHAEQVL 357 Query: 373 VESTQFSNQGTMAGAA 388 VE + + G G + Sbjct: 358 VEFSDLNENGISLGVS 373 >UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1T9_PAESJ Length = 387 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 100/384 (26%), Positives = 183/384 (47%), Gaps = 20/384 (5%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G + IK+ N V + + P+SR +S L L A+++ +V++++++ LV E+ E Sbjct: 7 GDLTLIKKINTSIVLEAVLKQAPLSRAQISELTGLNKATVSNLVQDLIDSDLVVEIGPGE 66 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 + GR V L+ +A + + + + I L DL ++ E + L L Sbjct: 67 SSG-GRKPVMLLFNGKAGYAVGIDLGVNYIRGVLADLEGNVIAERKRSLKKHQLEFTLKE 125 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 ++ I++ + + I I +PGI+D + I+ P E + + L + LE+ Sbjct: 126 LVQCIEELIGKAPASPYGIVGIGIGVPGIVDDQGSILF-APNLE-WRHVELQQMLEEQFQ 183 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +PV I ++ +A E +G RG I V + +G G+I + L + E+GH Sbjct: 184 LPVTIDNEANAGAQGEQKYGIGRGIAHQIYVSVGIGIGTGIILNKELYKGATGFSGELGH 243 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS---LCQAA 304 ++ GK C CGN GC E AS +++LE A PL DS L AA Sbjct: 244 LSIEYNGKPCRCGNEGCWELYASENALLEQA--------------APLGFDSLEDLLDAA 289 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 G+ + + +G ++G ++ +VN+FNP ++IG+ +S+A L + S+ ++ L Sbjct: 290 EAGNEEVRALFYKIGEYMGAGISNIVNVFNPDVVIIGNRMSRAKTWLEEAVQSSVTRRTL 349 Query: 365 PAYSQHISVESTQFSNQGTMAGAA 388 P + + + + + +Q + GAA Sbjct: 350 PYHRERLRILFAELQDQSAVRGAA 373 >UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZI2_HALOH Length = 391 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 91/390 (23%), Positives = 184/390 (47%), Gaps = 28/390 (7%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G+ IK N +++LI + GP++R +L+ + +I+ V+ +++ V E E K Sbjct: 6 GNSTFIKNLNQKRIFKLIHKEGPITRKELADNTDYSAGTISNHVKALIDQGFVIETE-KG 64 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL--- 124 + GR V L V + + +S+ + + + L +L K+V K P+ Sbjct: 65 YSSGGRKPVYLTVNPDKGYIISVEVEVTRVKIVLFNLKIKVVA--------KTVFPINGP 116 Query: 125 ------LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 + +I S I++ + K +++ I + +PG+ID E G++ P K +P+ Sbjct: 117 AQAKETISQIFSEIEKILSEREIKPDKILGIGVAVPGLIDKEEGLLEFAPNLGWSK-VPI 175 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 + E GVPV ++++ +A + E F +D++ V I+ +G G+I +G L Sbjct: 176 VKYFEDKYGVPVVLENEANAAAVGEKEF-VYPDIKDMVYVSINEGIGCGLIFNGRLYRGA 234 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + E GH +D G C+CGN GC ET+AS + I + + + + + Sbjct: 235 GGNAGEFGHIIIDSDGPLCHCGNSGCWETLASENHI--------QKEYQELTGEENVEKN 286 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + + A+ G+ A ++ ++G LA +VN +P+ I++G + +A ++ + Sbjct: 287 EIYRKAIEGEDRALSVVKQAAHNIGLGLANIVNSLSPRLIVLGGGIIEADTLIIDTVQSI 346 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAA 388 ++++ L + +E T+ + + G A Sbjct: 347 LKEKCLLLSYDKVDIEFTRLKDLACLYGLA 376 >UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobacterium dentium RepID=D2Q6V0_9BIFI Length = 390 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 98/394 (24%), Positives = 185/394 (46%), Gaps = 22/394 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 +A G +++ N + I + G +++I+L+ + L+ +++ V +++E Sbjct: 1 MARRTNGSQTSLRRANKANLLESIHKFGAMTQIELAEITGLSTGTVSTQVHQLVEE---G 57 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 +LE GR A + + + + L I+R ++FL + D S ++ E L K Sbjct: 58 KLETHNTIRNGRRATLVALSHDQGLGVGLSITRRDLFLVIIDYSKDIIAEHRLPLPPKHK 117 Query: 122 L-PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIID---TENGIVHRMPFYEDVK-EM 176 L+R I I++ + I + L +D I +P ++ + Sbjct: 118 ADTTLERAIRLINETLENAGTDAGEIVGIGVALGAPVDFHAQTAAIPGILPGWDGIDIHT 177 Query: 177 PLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLH 236 PL A VPV + +D +A + EA G + G ++ + + + VG+G++ +G ++H Sbjct: 178 PLTTAFH----VPVMVDNDANAAAICEARMGVALGKQNFVYIGTNDGVGSGIMVNGDIMH 233 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT 296 + EIGH QVDP G C CGN GCL TI VD + RL S+ S+ HG +T Sbjct: 234 GVTGLAGEIGHIQVDPLGSICSCGNRGCLNTI--VD------EARL-VSLLSVTHGN-MT 283 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 ++ L Q A GD + +I +G + + + +P+ +++G L+ + D S Sbjct: 284 MEDLVQTANAGDPGCRRVIADAAVRIGTVASDLCISVDPEMVVVGGSLAMSGDTFIEPFS 343 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 +++++ P I V + Q+ + G+ GAA++ Sbjct: 344 ETLQRLLFPNALTPIQVLAAQYPDSGSALGAAIM 377 >UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YIH1_EXIS2 Length = 386 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 102/396 (25%), Positives = 184/396 (46%), Gaps = 14/396 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 MV E P + ++ N V RLI P+SR++L++ +L +++ IV E++ LV Sbjct: 1 MVKE-MPRNSKWMRSYNRALVLRLIRMHQPISRVELAQQTKLTKPTVSNIVGELIADQLV 59 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E E+ N GR + L + + + + + + + DLS + E + + D Sbjct: 60 MERELG-VSNGGRKPILLELVAKEQYVIGIDATSHRFIGVIADLSGN-TIHEVETMGKFD 117 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L + + Q I ++ + I I++ G+++ E G++ P + + ++ L E Sbjct: 118 TNEELMEAVVQLCQQLIDATDQVGTIHGIGISVHGMVNPETGVILFAPRFH-LHDVALKE 176 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 LEQ PV+I++D+ A E LFG G + +G + DG L+ + Sbjct: 177 HLEQRFAYPVFIENDVRALASFELLFGEGVGVDQFFYLYAGEGIGGAYVLDGKLIDGENH 236 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 E+GH ++D G C CGN GCLE +A E A LR +++ Q T+ L Sbjct: 237 ITGEVGHMRLDLDGPICSCGNRGCLEALAG-----EKALLRDFEAVDP----QVKTLTEL 287 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 + D A G ++G + ++L NP++IL+G P+ + A + I + + Sbjct: 288 RRRLTDQDPHATAAYHRAGEYIGIGVLNTIHLINPKRILLGGPMFELAPSIVDQIKERVE 347 Query: 361 QQALPAYSQHISVESTQFS-NQGTMAGAALVKDAMY 395 AL S+ V+ +S QG ++ AAL ++++ Sbjct: 348 HTALTTASRETDVKMVPWSEKQGALSAAALATNSIF 383 >UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB Length = 421 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 91/335 (27%), Positives = 160/335 (47%), Gaps = 6/335 (1%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 DQI++ N V + + + GP++RIDL ++ +L+PA++T I ++L+ L+ LE +E Sbjct: 8 DQIRRQNRSIVLQALRRNGPMARIDLGQMTRLSPATVTAITSDLLDQELILSLESEEPKA 67 Query: 71 ---RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL--ALKDDLPLL 125 RGRP L + +A + + +R+S I LAL + + ++V E A +D Sbjct: 68 PQARGRPRTLLKLNPDAVYTIGVRLSVNNIDLALVNFAGEVVRSERSHFDSATEDAASFP 127 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 + +I I QF R+ I + G+++TE G+V P + +++P+ L Sbjct: 128 ETLIGTIRQFLNDAGIVPSRVREIGVAAQGVVETETGVVAWSPAFAG-RKIPIVGPLHDA 186 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 G YI +D + T A +R + +++D+ VG G+ D L S + E Sbjct: 187 FGADCYISNDTNMITEALHWSDPNRYSGTFAVIMLDYGVGMGLYLDNRLFSGASGTAAEF 246 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH P G C CG GCLE S +++ A + S + + L + A Sbjct: 247 GHANHLPGGALCRCGKKGCLEAYLSDYALVRAASHLPENTDPSTIKAGVGGLARLIELAG 306 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILI 340 GD A + G +G LA ++ + +P++I++ Sbjct: 307 SGDKDACNAFHEAGRVLGYGLARVIAMIDPKRIVL 341 >UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I1T3_CLOCE Length = 399 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 187/394 (47%), Gaps = 18/394 (4%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G+ +K+ N ++ LI VS+ L+++ L+P + IV +L+ ++E I Sbjct: 5 KAGNNKLLKEINETSLLELIRINKQVSKAGLAQITGLSPTACGTIVTNLLDKGYIREAGI 64 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSL--RISRGEIFLALRDLSSKLVVEESQEL----ALK 119 + RP ++ E Y S+ I I L D++ ++ ++ A Sbjct: 65 GTSKGGRRP---ILYELTPGSYFSIGVDIDIDYIRFILMDITGQVEFKDRISCDFARAAS 121 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDV--KEMP 177 + + L++ IS I + H + +RL + +++PG+ID + H + F ++ + + Sbjct: 122 ESIRLMEEKISEIIKI---HNIEHDRLLGVGVSVPGMIDN---LTHEIIFAPNLGWERVN 175 Query: 178 LGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHA 237 L +++ P+Y+ ++ + E G RD + + + +G+ + G+L Sbjct: 176 LEHMMDRIGDFPIYVDNEAMCSALCENWIGCCMDERDFVCINMKSGIGSSIFAAGNLYRG 235 Query: 238 GSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-QPLT 296 S EIGH VD G RC CGN+GCLE + S S++E AQ + Q + + + +T Sbjct: 236 CCGSAGEIGHITVDQNGPRCACGNYGCLEALVSARSMVEKAQKLVRQGLITDFEDIEAIT 295 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 VD + + A G+ A+ I+ ++G +A ++N NP KI++G L+K ++ + + Sbjct: 296 VDEIFRLAREGNESARVILVEAAGYLGLAIANLINTVNPSKIVLGKELAKFSEDIVDHLK 355 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 +AL + + V ++ + GAA++ Sbjct: 356 SIASAKALKYPASRVQVVVSKIGEDTSALGAAII 389 >UniRef50_B8F418 Transcriptional repressor of carbohydrate metabolism; PTS operon /sugar kinase n=9 Tax=Pasteurellaceae RepID=B8F418_HAEPS Length = 401 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 104/399 (26%), Positives = 186/399 (46%), Gaps = 24/399 (6%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 K + G VYRL++Q +SR DL++L+ APAS+T + + +++ L+ E + +RGR Sbjct: 9 KYQHLGTVYRLVEQFELISRTDLAKLSGFAPASMTVLTKILIDHKLILERTSQNLPSRGR 68 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHID 133 PAVGL V W YL L ++ ++ +AL DLS KL+ ++ L + L L I++ I Sbjct: 69 PAVGLSVSPFHWRYLCLTLAPQKLSIALCDLSGKLIYQQHYSLTSDEYLSLDQHILNCIQ 128 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQ 193 F + E L +I+I++ G ID I+ ++ + PL E L +H P+ + Sbjct: 129 TFSLNTPLTNEALLAISISVVGKIDRTKTIITQLG--QQPLTCPLVETLHRHFNQPILLN 186 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 W +AEA G+ +VI + +D V V+ G LLH + + + + Sbjct: 187 EHFQLWLLAEATLGSLIANDNVIFLQLDDQVNLSVLLKGALLHQDEHKRMNVDKMIMPKF 246 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML---------HGQPL---TVDSLC 301 + IA + +E QL NQ L H ++ C Sbjct: 247 SPLS--------DEIAEQQTEIERYQLT-NQVTFPALANLIDRYFDHQHTCLEDKINYFC 297 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + + A I++ + ++ +L ++N+F+ +KI++ SPL + LF + ++Q Sbjct: 298 EQVEAENPQAMQILSHLTDNLAYMLMNLINIFSTEKIMLNSPLLRIKKPLFEQLQTKLQQ 357 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL 400 L + I + ++Q+ + + +K +Y G LL Sbjct: 358 NLLLNELR-IDIVTSQYDWDSPLIPSIAIKLGIYEGCLL 395 >UniRef50_UPI00016C4534 transcriptional repressor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4534 Length = 388 Score = 127 bits (318), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 107/386 (27%), Positives = 175/386 (45%), Gaps = 35/386 (9%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 + + N V R+I G +SR +++R + L+ +++K V +L+A L++ + E RG Sbjct: 12 VGKLNERQVLRVIQSRGSLSRAEVARESGLSAPTVSKAVESLLKAGLIEATDAPEL-TRG 70 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD---LP------ 123 RPA L + T + L + I D+ VV + AL+DD +P Sbjct: 71 RPAPKLRLATTSAQVLGVAI----------DVCHCEVVSTGLDGALRDDTLTVPTPATYP 120 Query: 124 -LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 L+D + F R + ++LPG++D G P L Sbjct: 121 ELIDALTRAARTFMARPGVTT---LGLGVSLPGLVDYRKGCGVLSPNVAITNNHCPAADL 177 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + G+ + + A +AE +G ++G D + + VG G+++ G LL S Sbjct: 178 AERLGIECTVLQESHALCLAERHYGLAKGLDDFALLDVGAGVGLGIMSGGRLLKGRSGLA 237 Query: 243 VEIGH-TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH T V G+RC CGN GCLET+AS ++ LA +L G+ + VD + Sbjct: 238 GEIGHFTAVPVGGRRCGCGNTGCLETVASDSALAWLASQKL---------GRTVNVDEVI 288 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A G + + V V LA ++NLFNP + I +PL + + LF + R+ Sbjct: 289 DLARSGSVDLSAELREVAGFVAVGLAAVINLFNPATVFIHTPLFEIDEALFGTVVGRARE 348 Query: 362 QAL-PAYSQHISVESTQFSNQGTMAG 386 +AL P+++ V + QG +AG Sbjct: 349 RALPPSFADCTIVRAKGSKRQGAVAG 374 >UniRef50_B2GIX7 Putative NagC family transcriptional regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GIX7_KOCRD Length = 421 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 107/394 (27%), Positives = 190/394 (48%), Gaps = 29/394 (7%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + PG ++ N V + LG V++ ++R LAP++++ IV+E+ L+ +E Sbjct: 40 SAPGSQAALRLANRRRVVDAVRGLGAVTQARIARETALAPSTVSSIVKELTACDLLT-VE 98 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL-P 123 G RG+ + A H L + + + +AL DL+ +++ + EL+ + Sbjct: 99 PDHGGRRGQR---VRFSASAGHLLGVDVGHRHVAVALADLNLEILAQRRAELSPRHGARE 155 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHR---MPFYE--DVKEMPL 178 +LD D+ ER+ I LP +D + + +P + DV+E Sbjct: 156 VLDVARGMADELRDELGIPAERVLRAGIGLPAPVDAQGRGLDSAVILPHWSGLDVRE--- 212 Query: 179 GEALEQHT-GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHA 237 L H G PV +++D +A ++E GA RGARD+ + + H VGAG++ G L Sbjct: 213 ---LAAHVLGCPVVVENDANAGAVSEHALGAGRGARDMAYLKVSHGVGAGLVLGGTLYRG 269 Query: 238 GSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL-T 296 + + EIGH +D C CGN GCLET S ++LEL + GQP+ + Sbjct: 270 ATGAAGEIGHITLDERAGLCRCGNRGCLETFVSSAAVLELVR----------PSGQPVES 319 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 V + AAL GD +++ G +G ++A + NL NP+ +++G L++A ++L + Sbjct: 320 VSDVVDAALAGDPGCSRVVSDTGRVIGVVVAQLCNLLNPELVVLGGDLARAGELLLEPLR 379 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 ++ + L S + V ++ + + GA L+ Sbjct: 380 TAVDRYTLHGSSP-VRVVPSELGPRAHLTGALLL 412 >UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepID=Q1GMG9_SILST Length = 435 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 157/321 (48%), Gaps = 15/321 (4%) Query: 31 VSRIDLSRLAQLAPASITKIVREMLEAHLVQEL--EIKEAGNRGRPAVGLVVETEAWHYL 88 ++RID+++ ++PA++T I E+L A L++E+ E+ RGRP V L + A Sbjct: 62 IARIDIAQATGMSPATVTAITAELLAAGLIEEIAPELAPGARRGRPRVALRLRGAARLIA 121 Query: 89 SLRISRGEIFLALRDLSSKLVVEESQELALKDDLP---LLDRIISHIDQFFIRHQKKLER 145 L++S I + D + + L ++ +P L +I +D + +E Sbjct: 122 GLKVSHHVISTVITDFVGQELASHEMPL-VQGTMPVPELCAQIRRALDLTCEKGGFSIED 180 Query: 146 LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEAL 205 L+ + + + G++D + G ++ E+ + + A+ PV++ +D + AE L Sbjct: 181 LSGVGLGMAGMMDADRGFIYWSSSLEE-RNVAFTAAISAELPCPVFLDNDANLVAKAEHL 239 Query: 206 FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCL 265 FG R + I + I+H VG G++ D + E+GHT+V G C CG GCL Sbjct: 240 FGEGRTCDNFIVITIEHGVGMGIVIDQQIYRGTRGCGAELGHTKVHLEGALCQCGQRGCL 299 Query: 266 ETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRI 325 E ++L A N S S H T+ SL Q+A GD++AK I+ Sbjct: 300 EAYVGDYALLREA----NISSGSERH---TTIASLFQSAENGDVVAKSILDRARRMFAMG 352 Query: 326 LAIMVNLFNPQKILI-GSPLS 345 LA +VN+F+P KI++ G+ LS Sbjct: 353 LANVVNIFDPSKIILAGARLS 373 >UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepID=A4WVU3_RHOS5 Length = 425 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 166/333 (49%), Gaps = 24/333 (7%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR--PAVGL 78 V+ + G +R+ ++R ++PAS+T IV E++EA LV+E+ + G GR P V L Sbjct: 35 VFERVRAAGLTARVQVARDLGVSPASVTTIVSELIEAGLVEEVATRRGGESGRGRPVVAL 94 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQE-----LALKDDLPLLDRIISHID 133 V A + L+IS ++ + D + +L+ E +E LA L +L+ ++ D Sbjct: 95 GVRGAAHRVVGLKISDRDLSAVVMDFAGRLLAEHHEERRPVALAPASLLAVLETLL---D 151 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQ 193 + + + L ++ I LPG +D+ G V + +++PLG + G+PV + Sbjct: 152 RVTAKAGLARQELAAVGIGLPGYVDSTGGRVLWSSILAE-RDVPLGRLATERLGLPVQVD 210 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 +D + MAE FGA R D + V I+H +G G++T+ + +E+GHT+V Sbjct: 211 NDANLCAMAELWFGAGRRLSDFVVVTIEHGLGMGMVTNHRIFRGARGIGMELGHTKVQLD 270 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLN------QSMSSMLHGQPLTVDSLCQAALRG 307 G C CG GCLE + ++ A LN QSM+ +L +SL A G Sbjct: 271 GALCRCGQRGCLEAYVADYALAREATTALNWTHRESQSMAILL-------ESLHDHAKAG 323 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILI 340 + A+ I G ++ LA +VNL +P I++ Sbjct: 324 NQAARSIFRRAGRYLAVGLANIVNLVDPPLIIL 356 >UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifidobacteriaceae RepID=B3DR20_BIFLD Length = 389 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 182/388 (46%), Gaps = 24/388 (6%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G +++ N + I + G +++++L+ + L+ A+++ +V ++++ +LE K Sbjct: 7 GSQTSLREANRANLLASIHKFGAMTQVELAEVTGLSTATVSTLVHQLVDE---DQLETKS 63 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL--KDDLPLL 125 GR A + + + L I+R + L++ D S ++ E + L L K D L Sbjct: 64 TVRNGRRATLVTLARHQGLGVGLWIARRHLTLSIVDFSKSIIAEHTLPLPLGHKADTTL- 122 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTEN---GIVHRMPFYEDVK-EMPLGEA 181 +R + I++ + L I + + + T + I +P ++ V PL A Sbjct: 123 ERAMLLINETLSSIDAEASELVGIGVAVAAPVATSDHTIAIPGILPGWDGVDITSPLRTA 182 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 VPVY+ +D + E+ G + G R+ + + VGAG++ +G ++H + Sbjct: 183 FN----VPVYVDNDANFAAYGESRMGVAAGKRNFVYISASDGVGAGIVINGEIMHGVTGL 238 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH QVDP G C CGN GCL+T+ +A+ RL Q + S+ HG +T+D L Sbjct: 239 AGEIGHIQVDPLGAICSCGNRGCLDTV--------VAENRLVQ-LLSVTHGN-MTLDDLV 288 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A GD + II +G++ A + +P+ I++G L+ D+ ++++++ Sbjct: 289 SFANEGDPGCRRIIADAAVRIGQVAADLCISVDPEVIVLGGKLAMTGDVFIQPFNEALQR 348 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAAL 389 P I V + + G AL Sbjct: 349 MLFPDAVAPIDVLVSSHPDDNCALGGAL 376 >UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH81_KOSOT Length = 386 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/373 (25%), Positives = 180/373 (48%), Gaps = 32/373 (8%) Query: 31 VSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSL 90 +SR++LSR+ L +++ I++E L A +V+E K GN G+ + L ++ A + L + Sbjct: 27 ISRVELSRITGLTKTTVSSIIKEFLAAGIVEESPTKPNGNVGKTPISLHIKKNAVYTLGV 86 Query: 91 RISRGEIFLALRDLSSKLVVEESQELALKDDLP--LLDRIISHIDQFFIRHQKKLERLTS 148 + R I L D S K V+ ES L+ K + P +L+++ I+ + +K ++ Sbjct: 87 HLGRHNIKTVLMDASMK-VLMESNGLSYKKNDPDSVLEKLYLDINHIMEKAEKHGIKVGV 145 Query: 149 IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGA 208 I I +PG +D E G++ P +E +PLGE +++ +PV+I++D + +AE G Sbjct: 146 IGIGIPGPLDPETGVIKCPPKFEGWINIPLGEIIQKKYKLPVWIENDANVAALAEKWHGG 205 Query: 209 SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI 268 ++ ++ + ++++ +GAGV+ + L + EIGH+ +G+ Y LE + Sbjct: 206 AKYLKNFVYILVNEGIGAGVVINDELYQGTHDYVGEIGHSLFYVHGQFKY------LEDL 259 Query: 269 ASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKD--IITGVGAHVGRIL 326 VD ++S + L S+ A +LL D I+ + + L Sbjct: 260 YGVD------------VLTSQIKSCGLNAHSIEDVA---NLLKADNKIVYSIVRDSAKWL 304 Query: 327 AIMV----NLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQG 382 +I+V +L NPQ + IG ++ + L + + + Q Q V+ ++ S+ Sbjct: 305 SIVVLNVIHLLNPQAVFIGGTMAALGNYLIQPVKEIVSQYLFG--DQETDVKLSEISDNA 362 Query: 383 TMAGAALVKDAMY 395 GA + A + Sbjct: 363 VAIGAGIYATAKW 375 >UniRef50_A3TZT8 ROK family protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TZT8_9RHOB Length = 381 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/379 (25%), Positives = 179/379 (47%), Gaps = 28/379 (7%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 GP+SR DL R L+ A +TK+ +M+ ++++ E + GRP V L V+ ++ L Sbjct: 16 GPLSRADLVRATGLSSAGVTKLTAQMIVDGVLRQSRAVEEKSIGRPPVTLDVQRQSRFVL 75 Query: 89 SLRISRGEIFLALRDLSSKLVVEESQELALKDDL-PLLDRIISHIDQFFIRHQKKLERLT 147 + + G + +AL D+ L L +DL L+DR+ ++ + Sbjct: 76 GIHLGAGRMSVALSDVGLALRCPRHLSYDLSEDLETLVDRVSRLAEEVIDASGVYRLDIL 135 Query: 148 SIAITLPGIIDTENGIVHR--MPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEAL 205 + + +PG +D + R + ++DV + E+ G+PV ++H+ +A +AEAL Sbjct: 136 GVGLGVPGSVDPNRRVNVRSILTGWQDVA---FADVFERKLGLPVIVEHNATAMAVAEAL 192 Query: 206 FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCL 265 GA R A ++ +++ +GAG G G+ VEIGH V+P G+ C CG GCL Sbjct: 193 HGAGRDAESILYLLLGKGIGAGFAQTGAGARCGA---VEIGHIVVEPGGRPCLCGGQGCL 249 Query: 266 ETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRI 325 E S + + +++ + + H Q +D+ Q+ + A++ + Sbjct: 250 ERFFSEEPLRKMSGEKGDD------HSQ--MIDAAMQSP---------DWSATYAYLLQA 292 Query: 326 LAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMA 385 L+ V L P++I++G L+ A D + + + +P + + +E + S + Sbjct: 293 LSTTVTLMAPERIVLGGFLNAAPDRFVASLKRDLAPRVMPQQRERLRIERSSLSEPVGVQ 352 Query: 386 GAALV--KDAMYNGSLLIR 402 GAA + ++ YNG+ R Sbjct: 353 GAATIALEEFFYNGASTAR 371 >UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales RepID=Q0FFU4_9RHOB Length = 421 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 163/338 (48%), Gaps = 26/338 (7%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE-IKEAGNRGRPAVGLV 79 ++ L+ G ++R ++R ++P S+T + E++ ++E+E +RGRP V L Sbjct: 37 IFELVRATGRIARAKIARTLDISPGSVTALTAELISDGFLREVEETSRETSRGRPPVALE 96 Query: 80 VETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQ-----ELALKDDLPLLDRIISHIDQ 134 + +A + + +++S L D + SQ + + + L + II + + Sbjct: 97 LVPDALYVIGVKLSDELHTATLTDFGGNALASASQITTADKKSADELLTETEAIIRKVCK 156 Query: 135 FFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQH 194 QKK+ ++I + + GI++ E G+V P E++ + PLG+ + PV I + Sbjct: 157 SAKISQKKI---SAIGVGISGIVNYETGVVAWSPLLEEL-DTPLGDIFSTYFKTPVCIDN 212 Query: 195 DISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYG 254 D + T+AE FGA R + + I+H VG G ++D L S +E+GH++V G Sbjct: 213 DANVLTLAELWFGAGRALSNFAVITIEHGVGMGFVSDNRLFRGAHSMGLELGHSKVQLDG 272 Query: 255 KRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLT--VDSLCQAALRG 307 C CG GCLE LA L + S+ L Q L + SL + A G Sbjct: 273 ALCRCGQRGCLEAY--------LADYALAREASTALITPSSKRQDLNDYLKSLYEMAKLG 324 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILI-GSPL 344 D + I G ++ L+ +++LF+P+ I++ G P+ Sbjct: 325 DQASLKIFKRAGRYLAVALSNIIHLFDPKLIILSGKPM 362 >UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU Length = 384 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 90/358 (25%), Positives = 174/358 (48%), Gaps = 18/358 (5%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +K+ N + + I + P+SR LS + L ++++ V +++ +V E+ ++ Sbjct: 9 VKKVNQKLLLKEILKNSPISRAKLSEMTGLNKSTVSSQVNTLMKESMVFEIGQGQSSGGR 68 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 RP V LV +A + + + + I L DL +V+++ + L D +I I Sbjct: 69 RP-VMLVFNKKAGYSVGIDVGVDYINGILTDLEGTIVLDQYRHLESNSPEITKDILIDMI 127 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 F + + L I I +PG+ID + IV + +++ L ++++ VPV+I Sbjct: 128 HHFITQMPQSPYGLIGIGICVPGLIDKDQKIVFTPN--SNWRDIDLKSSIQEKYNVPVFI 185 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +++ +A E +FGA++ ++I V I +G GVI + HL S E+GH +D Sbjct: 186 ENEANAGAYGEKVFGAAKNHDNIIYVSISTGIGIGVIINNHLYRGVSGFSGEMGHMTIDF 245 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G +C CGN GC E AS ++L+ Q + + L+ + A D+ Sbjct: 246 NGPKCSCGNRGCWELYASEKALLKSLQTK----------EKKLSYQDIINLAHLNDIGTL 295 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ-ALPAYSQ 369 + + G ++G L ++N FNPQ +++ + + ++ P++ +S+R + + YSQ Sbjct: 296 NALQNFGFYLGIGLTNILNTFNPQAVILRNSIIES----HPMVLNSMRSEVSSRVYSQ 349 >UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHH0_PETMO Length = 385 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/390 (22%), Positives = 185/390 (47%), Gaps = 27/390 (6%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + + +K+ NA +++ + GP++R +++R +L P++++ I ++ +++E+ Sbjct: 2 KKASLSSLKENNAALIFQSLRIQGPMTRAEIARETRLMPSTVSYITNLLIHKKVLKEVGS 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 ++ G+ + L + + + ++ + G + + + K + S+ + + LL Sbjct: 62 EDVSRVGKKGILLDINYDDFLFIGYDV--GSAYSRVIVSNGKGDILYSKRFVSEKNDKLL 119 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 +I +I + K + I + PG ID ENG+V R D+ + + +++ Sbjct: 120 KQIYENI-----KMVKNKFNIIGIGMAFPGYIDPENGVVIR-SHNIDISNFEVKKVMKKE 173 Query: 186 TGVPVYIQHDISAWTMAEALF-GASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +P Y+ H+ MA L S +D + I +G G++++G +L ++ E Sbjct: 174 FNLPAYVDHN--TIMMARNLISNNSHKEKDFCVINIGPGIGVGIVSNGKILRGYKNAAGE 231 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 +GH V+P G++C CG +GCLET +S +I +R + +S G+ L + C++ Sbjct: 232 LGHVTVNPEGRKCNCGKNGCLETESSSKAI-----VRNYEEIS----GKNLECEGSCESK 282 Query: 305 L------RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 L +GD A G ++G +A +VN+ NP+K+ I +S + L S Sbjct: 283 LVYELAKKGDENAIKAFERAGKYLGIGIATLVNILNPEKVYIAGGVSNGWEFLKDSTEQS 342 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAA 388 Q A ++ +++E + T GAA Sbjct: 343 YNQHIFYA-NKDVTIEVSSIGEYITACGAA 371 >UniRef50_C9YT50 Putative ROK family transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YT50_STRSW Length = 429 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 98/360 (27%), Positives = 183/360 (50%), Gaps = 13/360 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 I+ N V R I P SR +L+ L+ A++ +V E+L+ ++ E+ +++ G Sbjct: 11 IRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLRMITEVGFEDSAG-G 69 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 RP + V + + I+ + + L DL+ ++ + + ++LP ++++ H+ Sbjct: 70 RPRGLVAVNASGGALIGVDIAETYVHVELFDLALNVLARAEENVRPGENLP--EQMVGHV 127 Query: 133 DQFFIRHQKKL----ERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 + R+ + +++PG +D GI P + D ++PL + L +H Sbjct: 128 AAAVGSVVAQAGIEGARVLGVGVSVPGQVDRATGISEYAPNW-DWHDVPLLDLLTEHIAY 186 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 P+Y+ + + A +AE FGA+RG D + V + VGAG++ G L S+S E GHT Sbjct: 187 PLYLDNPLRAVAVAELWFGAARGHGDAVIVNLGTGVGAGLVLGGGLHRGVSNSAGEWGHT 246 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH--GQPLTVDSLCQAALR 306 + G+ C+CGNHGC+ET I + LR S++LH Q T+ +L + R Sbjct: 247 TIVLDGRLCHCGNHGCVETYVGAPGI--MLNLRELSPRSTLLHPEDQTATIAALARGVAR 304 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA-ADILFPVISDSIRQQALP 365 D +A ++ ++G +A +VNLFNP+ +++ S ++ A + L + +++ + ALP Sbjct: 305 QDPVAVKVVRDTARYLGAGIADLVNLFNPEVVVLSSWVAAALGEPLVAEVREAVARHALP 364 >UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUR2_ACICJ Length = 398 Score = 124 bits (311), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 96/383 (25%), Positives = 180/383 (46%), Gaps = 23/383 (6%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +++ N+ ++ +I Q +S+ LS+++ + PA+I+ I+ + +V+ G G Sbjct: 11 VRRINSARLFHMIRQNPGISQQKLSQISGIDPATISIIINNLESGGIVRRDTDAPTGRAG 70 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRII--- 129 RP L ++ A + + + A+R + S + +LA+ I Sbjct: 71 RPTTALSLDPRAGYLAGISVEPD----AIRIVISTIDGTACADLAVPGSTAPEAAIAAAR 126 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDV--KEMPLGEALEQHTG 187 S + + L + + +P ++ T IV F ++ +++ + E L Q Sbjct: 127 SGVTAALRSLRATRATLLAAGVAMPALVSTGGRIV----FAPNIGWRDLDVAENLAQKLK 182 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 VPV +++D+ A +AE LFGASR D + V+ +G G+ G L EIGH Sbjct: 183 VPVRVENDVKAAALAEHLFGASRDIADFVYVMGRSGIGGGLYLMGELYRGPHGLAGEIGH 242 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 ++ P G+ C CG GC E S +IL +++ HG V S+ +A G Sbjct: 243 MKIVPGGRACGCGGQGCFEAYVSEKAIL--------SDLAARGHGA-RDVASVRKACEAG 293 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D +A+ ++ G H+G LA ++N+ +P++I++G L++ A L P +++ AL A Sbjct: 294 DPVARAVLAEAGRHLGLALANLINIISPRRIVLGGSLAQLAPFLLPAAMETLEANALAAI 353 Query: 368 SQHISVESTQFS-NQGTMAGAAL 389 + + + ++ S + M G AL Sbjct: 354 YRDVEIVVSEMSGSAAAMGGIAL 376 >UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Streptomyces RepID=B4V8E4_9ACTO Length = 425 Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 180/363 (49%), Gaps = 7/363 (1%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 GPVSR +++ L+ A++ +V E+LEA +++E E GRP L V E + Sbjct: 35 GPVSRQEIAAATGLSFATVANLVAELLEAGVLREAG-HEDSKGGRPRARLAVNAERGALV 93 Query: 89 SLRISRGEIFLALRDLSSKLVVEESQELALKDDLP--LLDRIISHIDQFFIRHQKKLERL 146 + ++ + + L DL+ ++ L D P ++D I++ ++ + R+ Sbjct: 94 GIDVAETSVQVELFDLALTVLRGVRLPLPQTDVRPQDVVDAIVAGVEGLS-DSAVEAPRI 152 Query: 147 TSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALF 206 +++PG+++ E G+ P++ +++PL L + +P+Y+ + + A T+AE F Sbjct: 153 LGAGVSVPGLVEREGGVSVFSPYWS-WRDVPLRSLLAERLPMPLYLDNPLKAGTVAEMWF 211 Query: 207 GASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLE 266 GA R D++ + + VGAG+ DG L ++S E GHT + G+ C CG GC+E Sbjct: 212 GAGREVDDLVVLTLRAGVGAGIAVDGALYRGATNSAGEWGHTCLVRGGRACRCGRQGCVE 271 Query: 267 TIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRIL 326 S I + + L+ + + + V + +AA GD +A + + ++G Sbjct: 272 AYVSSRGIADTVR-ELDAESPLLDPDEDVVVTKVARAAAEGDAVAAEAVARTARYLGEAA 330 Query: 327 AIMVNLFNPQKILIGSPLS-KAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMA 385 A ++NLFNPQ +++G ++ + + L D I ALPA Q ++ + + + Sbjct: 331 ADLLNLFNPQTLVLGGWVAERLGEPLLRQTRDVIAAHALPATLQALTFQRSTVPDNPVTL 390 Query: 386 GAA 388 GAA Sbjct: 391 GAA 393 >UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID=C7PXL8_CATAD Length = 390 Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 163/346 (47%), Gaps = 24/346 (6%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI-KEAGNRGRPAVGLVVETEAWHY 87 GP+SR+DL+R ++ A++TK R L+ + EL+ + A GRP L + + Sbjct: 27 GPLSRVDLARRLGISSAAVTKAARPFLDDGYLHELDSERTAPGAGRPVSPLAITPDREFV 86 Query: 88 LSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLT 147 + ++++ E+ + DL +++ ++L + +L + + +++ + + Sbjct: 87 IGVKVTADEVIGVVADLKARIRNSAHRQLPDCEPATVLATLAALVEELLDADPELRGKTR 146 Query: 148 SIAITLPGIIDTENGIVHRMPF--YEDVK-EMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 + + + G +D G+V P ++DV P+G+A TG+ V +++D+ A T+AE Sbjct: 147 RMGVAVSGDVDRVRGVVRLSPLLGWQDVDLAGPVGDA----TGLVVVVENDVKALTVAEH 202 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 FG G D V + +G G++T G LL E+GH VD G C+CG GC Sbjct: 203 WFGDGVGTDDFTLVTVGAGIGCGIVTGGRLLSGAYGVAGEVGHVCVDASGPVCHCGARGC 262 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGR 324 +E IA+ ++I+ A+L + LT + A G + + G +G Sbjct: 263 VEAIAATEAIVGRARLLTGRDG--------LTFTEAAELARSGSPEVCALFSEAGTAIGL 314 Query: 325 ILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 + +VNL P++I++ A D+ IRQ AY+ H Sbjct: 315 AITAVVNLIGPERIVVSGEGLDAYDLF----ETEIRQ----AYATH 352 >UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWK5_9BACT Length = 410 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/384 (25%), Positives = 189/384 (49%), Gaps = 28/384 (7%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL-EIKEAGNRGRPAVGLVVETEAWHY 87 G + +L++ ++ +ITK+V+E+++ ++V +L +++ G R RP V + + A ++ Sbjct: 38 GECTLSELTKELHISVPTITKLVQELVQENIVSDLGKVETPGGR-RPNV-FGLASSAIYF 95 Query: 88 LSLRISRGEIFLALRDLSSKLVVEES-QELALKDDLPLLDRIISHIDQFFIRHQKKLERL 146 + I R + + DL + +V EE + L+D L++I S+I F + ++ Sbjct: 96 AGVNIGRDNMSFLITDLHNNIVKEELLTDFELQDRPQCLEKICSNIAHFIDTCGVERAKI 155 Query: 147 TSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALF 206 + +++ G ++ G +R Y E L + +EQ G+ V +++D A AE Sbjct: 156 LGVGVSVSGRVNPTTGRSYR---YFTSSEQSLRDMIEQRIGIRVLLENDSQARCYAEYTN 212 Query: 207 GASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLE 266 S+ DV+ + + + G++ +G L + S E GH C CG GCLE Sbjct: 213 SKSKDEMDVLYLHLGRGLAIGIVMNGKLYYGKSGFAGEFGHIPFFDNEIICSCGKKGCLE 272 Query: 267 TIASVDSILELAQLRLNQSMSSMLHG-----QPLTVDSLCQAALRGDLLAKDIITGVGAH 321 T S +I + ++Q ++++L + + VD + AA D L+ ++I VG Sbjct: 273 TEVSGIAIEQKFGRLISQGVNTILREKYNKHEAIHVDEIIDAAKHDDNLSIELIEEVGEK 332 Query: 322 VGRILAIMVNLFNPQKILIGSPLSKAAD-ILFPVISDSIRQQALPAYSQHISVESTQF-- 378 G+ +A ++N FNP+ +++G L++A D ++ P+ + A YS ++ + T+F Sbjct: 333 AGKAVAFLINTFNPETVIVGGELAEAGDYLMLPL------KSATNKYSLNLVYKDTKFRL 386 Query: 379 SNQGTMAGAALVKDAMYNGSLLIR 402 S G A A + ++LIR Sbjct: 387 SKMGKTASA-------WGAAMLIR 403 >UniRef50_D1C346 ROK family protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C346_SPHTD Length = 335 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 145/290 (50%), Gaps = 11/290 (3%) Query: 106 SKLVVEESQELALKDDLPLL-DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIV 164 S +V E+ + P++ D + IDQ Q L + I I G +D G+ Sbjct: 38 SGRIVAEAHSIDASAPAPVVVDTVRGLIDQACSSIQADLSDIARIGIAFGGPVDAARGVT 97 Query: 165 ---HRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVID 221 HR P +E+ PL LE+ G+P +++D A + EA +GA+RG DV+ V + Sbjct: 98 LLSHRAPGFEN---FPLVNLLEEAVGIPSVLENDARAAAVGEASYGAARGCADVVYVHLG 154 Query: 222 HNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLR 281 VG G+I DG L+H GS + EIGH V G C CG G LE AS +I+ + R Sbjct: 155 AGVGGGIIVDGRLVHGGSGTAGEIGHMVVSVGGPICSCGKPGHLEAYASAPAIVNNFRER 214 Query: 282 LNQSMSSMLHGQ----PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQK 337 L + ++ +TV ++ Q A GD +A++++T +G +A ++ + NP Sbjct: 215 LRTARREVIDSWSAPGAITVGAIFQRARAGDEIAREVVTETVRVLGLAIANLITVLNPAA 274 Query: 338 ILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGA 387 +++G P+++ ++L + +RQ + PA + + + + QF + GA Sbjct: 275 VIVGGPVAEVGELLMDPLGARVRQYSYPASVRRLRLSTAQFRGDSAILGA 324 >UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGB0_EUBR3 Length = 412 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 138/267 (51%), Gaps = 9/267 (3%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL-EIKEA 68 +D +K N + +++ + G +SR D++ L PA++T + +M+EAH++ E E+KE Sbjct: 8 LDSVKNNNKSQILKILQKNGAMSRKDIANQIGLTPAAVTMLCNDMMEAHMILEKGEMKEQ 67 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP---LL 125 GR V + + + + +S+ I + + + ++ ++VE ++ + D+ L Sbjct: 68 KRAGRKKVLVDINYDFKYIVSVNIEAVDTSITVTNIRGNVLVE--TKVHTRTDIEPQLFL 125 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGI-VHRMPFYEDVKEMPLGEALEQ 184 + + I + KL + I I +PGI+D NGI +H + + ++ + E LE+ Sbjct: 126 EELAKEIKLQLWEKELKLSDILGIGICVPGIVDRNNGISIHAYGIWNN--QVKIREILEK 183 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 PV +++++ A+ AE L+G + +++ + VG+ ++ D L + E Sbjct: 184 QIQCPVILENNVKAFAEAEMLYGVGKYGNNIVFIKWGPGVGSAIVVDNKLYEGNQHNAAE 243 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASV 271 IGH ++P G +C CG GCLET S+ Sbjct: 244 IGHYIIEPDGLKCRCGRQGCLETRVSM 270 >UniRef50_C3QC45 ROK family transcriptional repressor protein n=19 Tax=Bacteria RepID=C3QC45_9BACE Length = 402 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 181/364 (49%), Gaps = 13/364 (3%) Query: 35 DLSRLAQLAPASITKIVREMLEAHLVQEL-EIKEAGNRGRPAVGLVVETEAWHYLSLRIS 93 DLS+ L+ ++TK + EM + + + +++ +G R GL E+ ++L + I Sbjct: 36 DLSKELDLSVPTVTKFIGEMCDDGYINDYGKLETSGGRHPNLYGL--NPESGYFLGVDIK 93 Query: 94 RGEIFLALRDLSSKLV-VEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAIT 152 R + + L + +V ++ + ++ + ++ + HI F + E++ +I + Sbjct: 94 RFAVNIGLINFKGDMVELKMNIPYKFENSIEGMNELCKHILNFIKKLTINKEKILNINVN 153 Query: 153 LPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGA 212 + G ++ E+G +E E PL + L + G V I +D A T E + G +G Sbjct: 154 VSGRVNPESGYSFSQFNFE---ERPLADVLSEKLGYKVTIDNDTRAMTYGEYMQGCVKGE 210 Query: 213 RDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVD 272 +D+I V + VG G+I DG + S E GH C+CG GCLET AS Sbjct: 211 KDIIFVNVSWGVGIGIIIDGKIYTGKSGFSGEFGHMSAYDNEIICHCGKKGCLETEASGS 270 Query: 273 SILELAQLRLNQSMSSMLHGQ------PLTVDSLCQAALRGDLLAKDIITGVGAHVGRIL 326 ++ + R+ SS+L + P+T+D + A + DLL +I+ +G +G+ + Sbjct: 271 ALHRILLERIQSGESSILSTRIATEENPITLDEIIAAVNKEDLLCIEIVEEIGQKLGKQI 330 Query: 327 AIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAG 386 A ++N+FNP+ ++IG LS D + I ++R+ +L ++ ++ +++ ++ + G Sbjct: 331 AGLINIFNPELVIIGGTLSLTGDYITQPIKTAVRKYSLNLVNKDSAIITSKLKDKAGIVG 390 Query: 387 AALV 390 A ++ Sbjct: 391 ACML 394 >UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A233_RHILW Length = 321 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 4/252 (1%) Query: 120 DDLPLLDRIISHIDQFFIR--HQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMP 177 D L DR+++ I R K + + ++ PG +DT G+ +P + P Sbjct: 35 DALAGPDRVLAQICGLADRLLAASKPASVVGVGVSAPGPLDTVTGVATDIPTLPGFVDFP 94 Query: 178 LGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHA 237 L L++ PV +++D A + E FG +G +++ V + +G GVI+DG ++ Sbjct: 95 LKAELQKRFAFPVDLENDAIAAAVGEWQFGIGKGLDNLVYVTVSTGIGGGVISDGRVVRG 154 Query: 238 GSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML--HGQPL 295 +GH V P G+ C CGN GC E S + AQ+R +S + L +G + Sbjct: 155 RKGMAAHVGHMSVVPNGELCPCGNRGCFEAYGSGPAFARRAQMRAMESRDTTLGSNGGAI 214 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 S+ AA GD LA ++ +GR ++++F+P I++G LS D L P I Sbjct: 215 DSRSVFAAARNGDRLANQLVDEEAEILGRGFTNLIHIFSPDIIVMGGGLSHEFDRLQPGI 274 Query: 356 SDSIRQQALPAY 367 I Q A+PA+ Sbjct: 275 QAYISQWAMPAF 286 >UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI Length = 373 Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 95/371 (25%), Positives = 175/371 (47%), Gaps = 12/371 (3%) Query: 35 DLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL-SLRIS 93 DLS+L + +T IV ++++ V E + + GR A+ ++ E ++ ++ + Sbjct: 6 DLSKLTHKSLPLVTGIVNDLVQDGYVVEHGLAPS-TGGRRALTFLLNKEKQKFIVAVSVD 64 Query: 94 RGEIFLALRDLSSKLVVEESQ-ELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAIT 152 + + + D+ + + VE ++ L L D+ + IS I + + E++ I I Sbjct: 65 QLITTVVIYDMLNNIQVEPAKIYLNLADEQTSMALFISFITGYIAKSGISEEQILGIGIG 124 Query: 153 LPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGA 212 +PG+I+ + G+ H F++ E L L PVYI +D S +AE FG R Sbjct: 125 MPGVINAKLGVNHT--FFKIKNEGNLKNYLSDALKFPVYIDNDSSLIALAELKFGEGRNM 182 Query: 213 RDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVD 272 +DV+ V I +G G+I +G + S E H + K C CG GCLE S+ Sbjct: 183 KDVMVVNIGWGIGLGMIINGDIFRGHSGYAGEFSHIPLSQSNKLCSCGKRGCLEVDTSLL 242 Query: 273 SILELAQLRLNQSMSS-----MLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILA 327 ++E A+ + +SS L L + AA GD LA I++ +G+ L+ Sbjct: 243 VLVERAKAEIAAGISSRLEQLFLDDSKLPGEHFLIAARDGDPLAVSILSDAAFLIGKGLS 302 Query: 328 IMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGA 387 ++++ NP+ I++G + A I I +I + +P + H + + + + + GA Sbjct: 303 TLIHILNPELIVLGGRGATAGKIFMAPIQHAINEFCIPRLADHTKISVSASAERSELLGA 362 Query: 388 AL--VKDAMYN 396 A+ V++ +N Sbjct: 363 AILVVENCQFN 373 >UniRef50_C0Z9T2 Probable glucokinase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z9T2_BREBN Length = 332 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/322 (26%), Positives = 156/322 (48%), Gaps = 27/322 (8%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL-DRIISHIDQFFIRHQKKLE 144 H + L + + A+ D + ++++ ++E + ++LP+L +R+ + I + +R Q + Sbjct: 3 HVIGLDVGGTTMKGAVMDENGRILLRAAKETKVHNNLPILIERMAALIKE--LRDQSPVP 60 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYE----DVKEMPLGEALEQHTGVPVYIQHDISAWT 200 + S+ I PG D ENGI P ++ D++ PL + +E +P++ ++D+ Sbjct: 61 -IESVGIGFPGPFDAENGISVHSPNFQLHQADLR-TPLAKLVE----LPLFFENDLRTAA 114 Query: 201 MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCG 260 + EA FGA R +I V + VGAG++ G L+ EIGH + C CG Sbjct: 115 LGEATFGAGRKVSHLIFVPLGTGVGAGIVNGGKLVRGSHGFAGEIGHVRYPGLTAPCNCG 174 Query: 261 NHGCLETIASVDSILELAQLRLNQSMS------------SMLHGQ--PLTVDSLCQAALR 306 GC+ET+AS I LA+ RL++ + ++ GQ +T + + A + Sbjct: 175 KLGCVETVASATGIARLARERLDKELDANPRQAKTSPLFTLCDGQLERITAEQVATAVEQ 234 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 GD +A G L+++VN+ NPQ ++IG + +A +IL + S+++ A+ Sbjct: 235 GDAVATCAWNEACEVTGWALSVLVNVCNPQLVVIGGGVCRAGEILLAPVQASVQKYAMDV 294 Query: 367 YSQHISVESTQFSNQGTMAGAA 388 Q + + M GA Sbjct: 295 VHQQTKIVLAELGADAGMLGAG 316 >UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899E8 Length = 386 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 101/396 (25%), Positives = 186/396 (46%), Gaps = 31/396 (7%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 D +K+ N V+++I P+SR +++ ++P ++++IV E+ E V E E + + Sbjct: 7 DFMKRQNRLTVFQIIKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQASAG 66 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-LDRII 129 RGR + + + A + + + R + + D+ ++ S + + + + RI Sbjct: 67 RGRKSSLIRLLDTAVISIGVELDRHQANIGFIDVQGNVLCSGSFSRSSDETADVTVTRIA 126 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 I++ R+ I + LPGIID + GIV+ K + L E L++ TG+ Sbjct: 127 ETIEELIAECDIDRRRVVGIGVGLPGIIDVDAGIVN-FSVQLGWKNVGLAERLKELTGLQ 185 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 + +++ +AE L G++ G+ + + + VG+ +I +G + ++S EIGHT Sbjct: 186 AVVDNELKVKALAEQLKGSAYGSNRTVLLGFGNGVGSALILEGEIYRGVTNSAGEIGHTT 245 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL-TVDSLCQAALRGD 308 VDP G C CG GCL+T ++ S+L S +S + +P+ T++ L G Sbjct: 246 VDPEGMMCDCGKAGCLQTYINIPSLL---------SEASKI--KPVRTIEELFAERRAGT 294 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQK-ILIGSPLSKAADILFPVISDSIRQQALPAY 367 A +I A++ + +V+++NP IL G L K FP + + I Y Sbjct: 295 RWASYLIDRALAYMAITINNVVSMYNPDSVILSGEFLDK-----FPEVYEEITD---LCY 346 Query: 368 SQHI--------SVESTQFSNQGTMAGAALVKDAMY 395 SQ+I S+ ++ G G+ LV Y Sbjct: 347 SQYIWEPLQDSFSIVRSELHEHGVTIGSGLVAQDRY 382 >UniRef50_Q8RBQ3 Transcriptional regulator n=3 Tax=Bacteria RepID=Q8RBQ3_THETN Length = 336 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 144/283 (50%), Gaps = 14/283 (4%) Query: 110 VEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPF 169 +E S + K + +++++I I H LE + SI I+ G +D E GI+ P Sbjct: 41 IEYSTKEFDKQPMKMINKMIQTIKDVLQNHNITLEEVKSIGISSGGPLDLEKGIILSPPN 100 Query: 170 YEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVI 229 E+P+ + L VPVY+++D +A +AE FG+ G +++I + +GAG+I Sbjct: 101 LPGWDEIPIVDILSNEFNVPVYLENDANAGAVAEWNFGSGVGCKNLIFLTFGTGMGAGLI 160 Query: 230 TDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSS- 288 DG L + E+GH ++ G Y G G E S I LAQ+ +++ +++ Sbjct: 161 LDGKLYRGTNGMAGEVGHIRLAKDGPVGY-GKKGSFEGFCSGGGIARLAQIEISKRLANG 219 Query: 289 ----------MLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKI 338 ML +T + + AA +GD +A +II ++G L+I++++ NP+KI Sbjct: 220 ESVEFCPSFDML--SKITAEDVAVAAQKGDKVALEIIKISAEYLGLALSILIDILNPEKI 277 Query: 339 LIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQ 381 ++G+ +K + ++ + I+++AL + +E ++ N+ Sbjct: 278 ILGTIFTKNESLFRKIVEEVIKREALEISAGVCKIEPSKLGNK 320 >UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F6K2_THELT Length = 403 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 87/347 (25%), Positives = 169/347 (48%), Gaps = 10/347 (2%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 D +K N V R I Q+G VSR +S+ L+ ASIT I +LEA+L++E ++ Sbjct: 6 DILKDHNEKIVLRTIRQMGEVSRTTISKKTGLSIASITNITSRLLEANLIKENRYGKSKG 65 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 RP + + E +W + +++ ++ + DL V+E+ L ++++I Sbjct: 66 GRRPVLLGINEKHSWA-IGVKVGYLYLYFVVTDLLGTPVLEQKIPLNTASYNAVVEKIAD 124 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 ++ + + I + + G +D+E+GIV + + + +P+G LE+ PV Sbjct: 125 FVNTIVKIPEYVDRKFLGIGVAVSGSVDSEHGIV-KSSYILEWGNVPIGPVLEERIKAPV 183 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 + +D+ ++ +A G ++ ++ I + + VG +I G L+ G EIGH V Sbjct: 184 LVYNDVDSFAVAHYTIGRAKKYKNCIFITLGSGVGGAMILGGK-LYTGRGGAGEIGHMTV 242 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS----LCQAALR 306 GK+C CG++GCLE S +++++ +++ ++ S+ + LT + AL+ Sbjct: 243 ICDGKKCSCGSYGCLEAEISFNALVD--RIKKKTNIESLKNRSCLTTEDEAIHYIHKALQ 300 Query: 307 GDLLAK-DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 D A + + +G + M+N+F P +LIG + D+ Sbjct: 301 IDREAVIEAFDEISVLLGVAIKNMINIFAPDYVLIGGEALEFRDLFL 347 >UniRef50_D2BD51 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangineae RepID=D2BD51_STRRD Length = 401 Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 96/367 (26%), Positives = 178/367 (48%), Gaps = 18/367 (4%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + QP ++ TN V R + + P SR D++ L A+++ +V ++++ LV+E Sbjct: 7 DPQPADFADVRATNLAVVLRFVREHAPCSRADIAASTGLNKATVSSLVADLIDRRLVRET 66 Query: 64 EIKEAGNR-GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL--ALKD 120 + E NR GRPA LV++ + + + ++ + DLS + ++ + A Sbjct: 67 GLTE--NRVGRPATMLVLDGSPYAAIGVEVNVDYVTAVAVDLSGERLLSWRRSFSGATIT 124 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPF--YEDVKEM-P 177 + + + + + R K+ ++ +A+ +PG++ T+ G V P + D Sbjct: 125 AAQAVATVAAIVRRVVNRMAKEERQVLGLAVGVPGLVGTD-GTVRIAPNLGWRDADLCGD 183 Query: 178 LGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHA 237 L +AL + G PV + +D + +AE FG G +++ + + VGAGV+ DG L Sbjct: 184 LTKAL-RDPGFPVQVDNDANLAALAEHRFGPRAGTANLVYLTGEIGVGAGVVLDGRLRRG 242 Query: 238 GSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTV 297 G EIGH Q+DP G C CG GCLE +A + ++LE A L + + + Sbjct: 243 GQGYGGEIGHIQLDPLGAECRCGRLGCLEAVAGIGAVLEHAALSPAEV--------EIEL 294 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 D + + A D ++ VG ++G+ +A++ NL NP+ +++G A L P + Sbjct: 295 DEVVRLARAADPRILAVLATVGHNLGKGVAVIANLLNPEVVILGGYYVPLAPWLLPAVEA 354 Query: 358 SIRQQAL 364 +R + + Sbjct: 355 ELRGRTI 361 >UniRef50_A3I0K9 Putative ROK family transcriptional repressor protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I0K9_9SPHI Length = 415 Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 90/327 (27%), Positives = 170/327 (51%), Gaps = 22/327 (6%) Query: 83 EAWHYLSLRISRGEIFLALRDLSSKLVV-EESQELALKDDLPLLDRIISHIDQFFIRHQK 141 +A++ LS+ +SR ++ LAL + L +ES ++ L ++ D++ ID++ ++ Sbjct: 89 DAFYVLSVDLSRFQVNLALYSCNQSLAASKESHKITLNNEKETFDKLCDIIDEYLVKTGI 148 Query: 142 KLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTM 201 E++ +I ++PG++D+ G+ + Y + L E LE+ +++++D A T+ Sbjct: 149 PSEKIIAIGFSMPGLLDSIGGVNYT---YLKFGKKSLLENLEERFSKKIFLENDARAMTL 205 Query: 202 AEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV-DPYGKRCYCG 260 AE FG+ ++V+ + + +G G+I DG + S E H+ + + C CG Sbjct: 206 AEFKFGSEHSHKNVLGIFVGWGIGLGIIIDGKIYQGASGFAGEFSHSPIFESRDVTCTCG 265 Query: 261 NHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLLAKDI 314 GCLE++AS +I+++A+ + S+L H L + +AAL GD A I Sbjct: 266 KKGCLESVASGTAIVKMAEEAIKLDPDSILARMVRDHQGELEPALVVEAALAGDQRAITI 325 Query: 315 ITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVE 374 ++ G +GR ++I++ L NP+ I+IG +++A L I QQAL YS S E Sbjct: 326 LSEAGLDLGRGISILIQLLNPELIIIGGSVAEANQYLITPI-----QQALNIYSMAKSRE 380 Query: 375 STQFS------NQGTMAGAALVKDAMY 395 +Q + + G + G A+V + ++ Sbjct: 381 KSQLALYQLGEDVGLLGGVAVVNEKLF 407 >UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP32_9FIRM Length = 406 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 101/395 (25%), Positives = 177/395 (44%), Gaps = 12/395 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +KQ N G + +LI SRI+LS+ LA ++T IV E LE + +E + + +G Sbjct: 16 LKQRNRGLILKLIATGQCSSRIELSQKTGLAKMTVTYIVNEFLERGIFEERQKVQVEGKG 75 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R V L + +A + + + R + L D+ KL+ + + + L++ I + Sbjct: 76 RNPVQLCISDKAPKLIGVHLYREICSVILCDIQLKLLKKICFPVTEETAPQLMEHIFHAL 135 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 DQ I E++ I I G +D G + P + + ++ + +E+H +PV+ Sbjct: 136 DQ--IMETLGDEKIYGIGIGAIGPVDKNRGKILAPPNFYGLHDLEIAREIEEHCHMPVFF 193 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 + + + E +GA D I V + + VG+G++ +G L S + E+GHT +D Sbjct: 194 DGESNCAAIMEKYYGAGTDCEDFIYVDLANGVGSGLVVNGELYANTSGMICELGHTSIDW 253 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G+ C CGN GCLE S ++LE ++ M G +D + G+ K Sbjct: 254 QGEPCSCGNRGCLERYIS-SNVLESQLQKVTGDMKD-FRGFCQEMDEAIKEG-EGNTFTK 310 Query: 313 ------DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 + T + + L VN NPQKI+IG D I + ++ + Sbjct: 311 RQQDMDRVFTEMTEKLSCALVGFVNSLNPQKIIIGHEGYWIPDPYLCKIEKLVNERHIER 370 Query: 367 YSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLL 400 + I V + F ++ T+ G + A++ GS Sbjct: 371 KYRQIQVVKSGFKDEATVYGCTGALLTAVFEGSFF 405 >UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q6P6_CATAD Length = 429 Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 101/381 (26%), Positives = 171/381 (44%), Gaps = 38/381 (9%) Query: 31 VSRIDLSRLAQLAPASITKIVREMLEAHLVQE-------------------LEIKEAGNR 71 SR +L RL L+ A+++ +V +++ A LV E EA +R Sbjct: 36 TSRPELVRLTGLSRATVSVLVADLISAGLVVEENGANGSGGSSGSSGSGGSSGTPEAESR 95 Query: 72 --GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP--LLDR 127 GRPA+ L + + + I + +AL DL V E S+ + D P LD Sbjct: 96 SMGRPALPLALNRSVAYAIGADIGHAHVRVALCDLHGTPVWETSRAKEV-DRAPHETLDL 154 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHR--MPFYEDVKEMPLGEALEQH 185 + + + ER+ + + + +D + + MP + ++ P LE+ Sbjct: 155 AADLVRRALTENGVSGERVLGLGVGIAAPVDADGALSAEGIMPGWTGIRPGP---ELERR 211 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 TG+ + +D +A +AE ++GA R D++ + + +GAGVI G L EI Sbjct: 212 TGLATELTNDANAGALAEHMYGAGRDIEDMVYIRLSAGIGAGVIAAGRLQRGAGGLAGEI 271 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH G C CGN GCLETIAS ++ L Q + ++ P + +L A Sbjct: 272 GHLPAVRDGLVCRCGNRGCLETIASPVAVARLLQDSWGEPVA------PGDLPALLAAGT 325 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 G ++ G VGR LA +V L NP+ I++G L+ + LF + I + ALP Sbjct: 326 PG---TARVVEDTGEAVGRALAGLVTLLNPRLIVVGGDLAAIGEPLFEPLRRGIARYALP 382 Query: 366 AYSQHISVESTQFSNQGTMAG 386 + ++ ++V + + + + G Sbjct: 383 SAARQVAVVAGRLGSSAEVRG 403 >UniRef50_C1D0G6 Putative transcriptional regulator, NagC family n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0G6_DEIDV Length = 440 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 104/382 (27%), Positives = 184/382 (48%), Gaps = 20/382 (5%) Query: 32 SRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLR 91 +R+D++R ++ ++I+ IV E++ LVQE + +G GR A L + A L++ Sbjct: 32 ARVDIARDLGMSRSAISSIVSELIGVGLVQEGNTRGSGRAGRRATLLSLNARAAALLAID 91 Query: 92 ISRGEIFLALRDLSSKLVVEES--QEL--ALKDDLPLLDRIISHIDQFFIRHQKKLERLT 147 + + + L DL + + + E+ + LL R+ + + + + Sbjct: 92 LGASHVRMDLMDLRCRTLASRTVPHEVISGPAETYHLLLRLADAVQR---EAHVPADHVA 148 Query: 148 SIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFG 207 + + +PG +D + G V R P P+ EAL++H G+ V + +D + AEA FG Sbjct: 149 LVGLGVPGPVDQDTGRVIRPPNMPGWDGEPVREALQRHLGLEVLVDNDANLGAQAEARFG 208 Query: 208 ASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLET 267 RG D+I V +GAGV+ G L EIGH ++ G GN G LE+ Sbjct: 209 PHRGVSDLIYVKAATGIGAGVLLGGRLHRGVRGGAGEIGHISINEQGPVGRSGNPGSLES 268 Query: 268 IASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILA 327 A+ ++ A+ R ++L P+T+ +L + A D LA+++ VG H+G ++ Sbjct: 269 YAAAQVLVATAEARRAAGAPTLLT-DPVTLPALVRHA-ETDPLARELWEDVGHHLGVAIS 326 Query: 328 IMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQF------SNQ 381 +NLFNP ++IG L++A PV +++R AL + + I+ E T+ + Sbjct: 327 TALNLFNPAVVVIGGRLAEAG----PVFLNAVRSSAL-SRTMQINAERTRIDLSTLGGDA 381 Query: 382 GTMAGAALVKDAMYNGSLLIRL 403 G + A++ D + S L L Sbjct: 382 GVLGAGAMMLDQLLTSSGLPHL 403 >UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZX8_DEIGD Length = 408 Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 173/377 (45%), Gaps = 19/377 (5%) Query: 34 IDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR---------GRPAVGLVVETEA 84 +DL+R L+ ++I+ IV E+++A LV+E + AGN GR A L + A Sbjct: 1 MDLARELGLSRSAISSIVTELMDAGLVREAGQRVAGNGASRGAGGPVGRRATLLSLNARA 60 Query: 85 WHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQK-KL 143 H L++ + + L DL + + + + ++ + Q + Sbjct: 61 AHLLAVDLGASHARVDLLDLRCTTLATRTAQHDILRGPAATYALLKELAQAVLEEAGVPR 120 Query: 144 ERLTSIAITLPGIIDTENGIV---HRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWT 200 ER+ ++ +PG +D G V MP ++ M LE+ +P + +D + Sbjct: 121 ERVAAVGAGVPGPVDYATGCVVQPPNMPGWDGENVM---AGLERVLDLPTRVDNDANLGA 177 Query: 201 MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCG 260 +AE+ FG RGA D+I V + +GAGV+ G L EIGH ++ G G Sbjct: 178 LAESRFGVHRGAADLIYVKVATGIGAGVLLGGRLHRGVRGGAGEIGHISINEQGPVGRSG 237 Query: 261 NHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGA 320 N G LE+ A+ +LE A+ R + S L PLT+ L A D LA+ + G Sbjct: 238 NPGSLESYAAAQVLLETARARRAGGVPSTLP-DPLTLADLIAFA-NTDPLARAVWAEAGH 295 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVE-STQFS 379 H+G ++ +NLFNP ++IG L++A ++ + +S + + + ++ ST Sbjct: 296 HLGVAISTALNLFNPSAVVIGGRLAQAGEVFLHAVRESALSRTMRINADRARIDLSTLGE 355 Query: 380 NQGTMAGAALVKDAMYN 396 G + A++ D ++ Sbjct: 356 GAGVLGAGAMLLDHLFT 372 >UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCD4_BACSK Length = 403 Score = 120 bits (301), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 93/386 (24%), Positives = 181/386 (46%), Gaps = 11/386 (2%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 Q+ + N LI GP+S+ +++ Q++P + I+ ++++ VQE + + Sbjct: 2 QLHEVNRINALNLIRLRGPLSKNMIAKQIQVSPTTAATILNKLIDEGYVQEEGVGHS-TG 60 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR V + ++L ++ + +A +L + E+ ++ +D ++ Sbjct: 61 GRKPVLYRFNPDKSFIIALSLANSSVRIAALNLEGHVRSEQYGQVDSLRGEAYIDFVMKT 120 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 + +F R +K L+ I+I +PGI+ E GIV D+ ++ L + +E G+ Y Sbjct: 121 LSEFIGRFEK-LDECLGISIVVPGIVQAERGIVSYNAKL-DLYDVHLKQKVEAAFGLRTY 178 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 + +D++A MAE FG +R ++++ + + VG+G+ +G + S S EIGH V Sbjct: 179 VDNDMNAMMMAEKQFGTAR-YKEMLFISVGEGVGSGLSVNGSIYRGFSGSAGEIGHMSVL 237 Query: 252 PYGKRCYCGNHGCLETIASVDSIL-ELAQLRLNQSMSSML----HGQPLTVD--SLCQAA 304 P G C CGN GCLE + +I + L Q + + + G+P + +AA Sbjct: 238 PGGPACPCGNQGCLENYVNWPAIYSRILSAWLTQGVKTAIIESAAGRPEAIKPTDFVEAA 297 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 GD A ++ + + + ++L NPQ +++ P + LF +++ I +AL Sbjct: 298 CAGDPFALTVVEEMAESLAVAITNSLHLLNPQAVVLTGPHVQNNLPLFKRLNEKINSRAL 357 Query: 365 PAYSQHISVESTQFSNQGTMAGAALV 390 ++H V+ + GA V Sbjct: 358 NPIARHTEVKPASLETNKDILGALAV 383 >UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX6_9ACTO Length = 396 Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 94/390 (24%), Positives = 187/390 (47%), Gaps = 30/390 (7%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 PG +++ N V ++ Q GP+++++++ + L+ A+++ +V+E+ +A LV + Sbjct: 8 PGSQASLREANRERVLGVVRQHGPLTQVEIAAASGLSAATVSNMVKELDQAGLVG---LS 64 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-- 124 + GR AV +V + L ++ GE RD+ + ES+E+ + +PL Sbjct: 65 PSIRNGRRAV--LVSLASGGGLLAGVAFGE-----RDVRVA-IASESREILAEQLMPLQA 116 Query: 125 -------LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMP 177 ++R + +++E + +I LP +D+ +G + + Sbjct: 117 DHVADDGMERAARLLADLTESVGQRVEDIGAIGFGLPTPVDSVSGEAGSDAVLPGWRGVH 176 Query: 178 LGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHA 237 + EA+ + PV + + + + E GA R + + + VGAG++ G + Sbjct: 177 VAEAMSGYLRAPVVLDNTANLAALGELRAGALRDVQHGCYIKFSYGVGAGIVLGGEVFRG 236 Query: 238 GSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTV 297 + + EIGH +D G C CGN GCL+T ++ LN +S HG PL + Sbjct: 237 SAGTAGEIGHLTIDENGPICRCGNRGCLDTFVGSRAL-------LNSLAAS--HG-PLRL 286 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 + AL GDL + +I G VG +A +VNLFNP+ I++G L++A +++ + + Sbjct: 287 RDVITRALAGDLGCRRVIEDAGRRVGVAVAGLVNLFNPEVIVVGGKLAEAGELVMLPLRE 346 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGA 387 ++ + A+P+ + + + + + + GA Sbjct: 347 ALDRCAIPSAAATVELRPAELGDTADVLGA 376 >UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0H5_HERA2 Length = 414 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 182/367 (49%), Gaps = 18/367 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +++ N V +LI + G +SR D+++ +L+ ++++ I+ ++++A LV E I + Sbjct: 14 MRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIGTSKGGR 73 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD----LPLLDRI 128 RP + L +A + + L +SR + + DL++++ + D +PL+ ++ Sbjct: 74 RPII-LEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGMPLIKQL 132 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 IS R+++I + +PG +D NG P +P+ E L Q + Sbjct: 133 IS---TMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIREELSQTFRL 189 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDH-NVGAGVITDGHLLHAGSSSLVEIGH 247 PV I +D + MAE +GA +GA++++ + + +GAG+I D HL S E+GH Sbjct: 190 PVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGSIGSAGEVGH 249 Query: 248 TQVDPYGKRCYCG-NHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 T + + N G LE +AS ++L LA+ + S +H +L + A Sbjct: 250 TTLSVENDESFGPINAGSLEALASQITVLRLAREQKLISADDDVH-------TLVRKAES 302 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 + + I+ ++G +A ++N+FNP +++IG + + + +L I ++ ++AL Sbjct: 303 SPEI-QAILRRTAHYLGVAIASIINIFNPDRVVIGGVIPETSPLLIETIRATVARRALSI 361 Query: 367 YSQHISV 373 + S+ Sbjct: 362 AVNNTSI 368 >UniRef50_C2KRE7 Possible N-acetylglucosamine repressor n=1 Tax=Mobiluncus mulieris ATCC 35243 RepID=C2KRE7_9ACTO Length = 409 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 100/362 (27%), Positives = 180/362 (49%), Gaps = 16/362 (4%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 G SR DL+R +++PA IT++V+++L+ L+QEL E GRP+V L +++ + + Sbjct: 31 GSQSRADLARRLEVSPALITQVVKKLLDEGLIQELNSAETTQMGRPSVQLGLKSVDYTAV 90 Query: 89 SLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFFIRHQKKLERLT 147 L+++ I LS ++ +S E+ L L + + I + +F + R+ Sbjct: 91 GLKVASDHISCVESTLSGEVC--KSTEIPLNASSLEVAEIIARELKKFMGSGYEN--RVL 146 Query: 148 SIAITLPGIIDT-ENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALF 206 + + +PG +D E G V+ D MPLG+ L +PV ++++++A +AE LF Sbjct: 147 GVGVGVPGTVDALEIGEVNSTLLGWDT--MPLGKLLRNELRLPVIVENNVNALAVAEYLF 204 Query: 207 GASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLE 266 G ++ V + VG+G +G +LH + +GH V P G++C+CGN GCLE Sbjct: 205 GVGDVYDSLLVVTLGTGVGSGYCNEGTVLHGMRGAAGNLGHVIVKPGGEKCHCGNSGCLE 264 Query: 267 TIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRIL 326 T+ +++ A+ R L + +++L A G+ A I + H+GR + Sbjct: 265 TLIGESALITAARSR-------GLIREDQKIEALIDLANSGNEDAAKIFSRGAEHLGRSI 317 Query: 327 AIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAG 386 A +VN+ P+ I+I ++A V ++R + + I V Q+ + G Sbjct: 318 AAVVNVLAPEVIVIQGEGTQAWKYWDSVFKHTLRSNIIKEL-RDIDVVIRQWRDDKWALG 376 Query: 387 AA 388 AA Sbjct: 377 AA 378 >UniRef50_C3RN66 ROK family protein (Fragment) n=2 Tax=Bacteria RepID=C3RN66_9MOLU Length = 298 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 131/269 (48%), Gaps = 4/269 (1%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +L RI ++ +++ E++ ++ I +PG+++ +GI P + + + + E E Sbjct: 21 VLKRIEKCLEILVLKNNLSFEQIDALGIGVPGLLNRNDGISLFSPNFNNWHNVKIKEWFE 80 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 +P I +D+ E FGA +G +++I + I +G+G++ DGH+L+ + S+ Sbjct: 81 HKWLIPTVIDNDVRMHLYGELYFGAGKGFKNIILIAIGTGLGSGIVVDGHVLYGANDSVG 140 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMS----SMLHGQPLTVDS 299 EIGH + +G+ C CG+ GCL S ++ + + MS + + +T Sbjct: 141 EIGHMNMYRHGRACRCGSSGCLGRYVSAVGMINTFKEKDIDHMSIVNRWVNNCDEITAKM 200 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 +CQA D + + G +G + ++NLFNP++I+IG +S A + L + Sbjct: 201 ICQAYDLNDSIVVATLKETGEILGYGITNLINLFNPERIIIGGGVSNAGERLLASTREVA 260 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAA 388 AL S + + + Q M GAA Sbjct: 261 AIHALEIASNNCDLVVAELGEQAGMYGAA 289 >UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CNA8_VARPS Length = 389 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/273 (26%), Positives = 133/273 (48%), Gaps = 8/273 (2%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +L R+ + + R + + I I +PG ++ E G + P + + L Sbjct: 106 VLARVRVLMRELLARCGHGPKNVLGIGIGVPGPVNFEIGQLVNPPLMPAWDSFSIRDYLR 165 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + PV++ +D++ + E L+ R + + + I +G G++ G + + S Sbjct: 166 EDYAAPVFVDNDVNLMALGE-LWRLKRSLNNFLVIKIGTGIGCGIVCHGEVYRGAAGSAG 224 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTV 297 ++GH VD G RC+CGN GC+E +A+ +I +A S+ML HG+ + Sbjct: 225 DVGHICVDQDGPRCHCGNVGCVEAMAAGPAITRMAVQAAEAGESAMLAECLRVHGRIDAI 284 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 D + QA+ GD A II G +G++LA +VN FNP + IG +++ + + Sbjct: 285 D-VGQASRAGDTAANGIIQRAGNLIGQMLASVVNFFNPSHVFIGGGITRIGPLFLAAVRQ 343 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 S+ Q++L ++H+ ++ T QG + GA ++ Sbjct: 344 SVYQRSLALSTRHLEIQYTPLGVQGGLVGAGVL 376 >UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepID=D2PL28_9ACTO Length = 404 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 182/390 (46%), Gaps = 24/390 (6%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 + ++++N + I + GP+SR +L R L+ AS++ +V E+L+ +V+E E+ Sbjct: 8 VRDMRRSNRSVILTSIYRHGPLSRYELGRETSLSAASVSNLVGELLDEGVVEEAGSVES- 66 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVV---------EESQELALKD 120 + GRP V L V + + + + + L DL+ +V + + ELA++ Sbjct: 67 DGGRPRVLLRVAPTFGYVVGAEVGETRVRVELFDLAMNVVATVVSPIETPKPAPELAVRS 126 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIID-TENGIVHRMPFYEDVKEMPLG 179 L LD +I+ ER+ + + + G+++ + +VH D +PLG Sbjct: 127 VLQGLDEVIAGAG-------VAKERVLGLGVAVAGVVEGPADAVVHAQTLGWD--GVPLG 177 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L T +P+ + + + AE FGA RGA D + ++ VGA ++T G Sbjct: 178 AMLAAGTEIPIQVDNGANTLGQAEMWFGAGRGATDAVVALVGSGVGAALVTGGTSYRGTR 237 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 SS E GHT + G++C CG GCLE +++LE + R S+ + + Sbjct: 238 SSAGEWGHTTIMYGGRQCRCGALGCLEAYVGAEAVLE--RYREAGGPSAATDDEEAEFVA 295 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKIL-IGSPLSKAADILFPVISDS 358 L A ++ AK + +G ++G A +VNL NP++I+ G + P + ++ Sbjct: 296 LLAAVGTSEVAAKVVEDTIG-YLGAGFANLVNLVNPERIVLGGWAGLLLGERYLPQLREA 354 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAA 388 + + AL +++E + + GAA Sbjct: 355 VGRHALRRPYAQVAIELCELGSDAVARGAA 384 >UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETA5_9FIRM Length = 406 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 178/377 (47%), Gaps = 17/377 (4%) Query: 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRP 74 Q N +V +I P+++ ++R L+ ++ KI E HL++ E+ RP Sbjct: 3 QLNRKSVIDIIRTQSPINKAQIARQTGLSIPTVMKITDEFERNHLIRVNGKGESNGGKRP 62 Query: 75 AVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP---LLDRIISH 131 + L + +A++ + + + R I + DLS KL+V+ES + +P L++R+I Sbjct: 63 EL-LEIIPDAYYIIGVDVGRSRIKAIIMDLSGKLIVKES--IKTGRTVPSQQLIERLIYL 119 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMP--FYEDVKEMPLGEALEQHTGVP 189 I Q + + + I +PG++DTENG V P +E+V+ L + +E H Sbjct: 120 IHQVVQESNISVSQFLGLGIGMPGLLDTENGTVLFSPDFHWENVE---LVKPIEDHFPFY 176 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 +++ A M E FGA + I + + H +G+ ++ +G S EIGH Sbjct: 177 TILENSNRAMAMGEHWFGAGVESSYFICLNLGHGIGSAIVQNGEFYRGSCGSSGEIGHIT 236 Query: 250 VDPYGKRCYCGNHGCLETIASVDSIL----ELAQLRLNQSMSSMLHGQPLTVDS--LCQA 303 ++ G C CGN GCLE +AS +++ EL + Q + + G +D+ + A Sbjct: 237 LEKDGPLCSCGNRGCLEALASANAMAGQARELVRQGKGQRILELAQGNEENIDAKEIFDA 296 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD A I+ ++G LA +NL +P +++ ++ A D L + I+ + Sbjct: 297 AKEGDAAAALIVDKAIEYIGIGLANYINLLDPDMLILAGGVTGAGDYLITRLKRVIKARQ 356 Query: 364 LPAYSQHISVESTQFSN 380 + + + + ++ N Sbjct: 357 MKFAGRKVKIRISKLGN 373 >UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6 Tax=Sphingobacterium spiritivorum RepID=C2FZL1_9SPHI Length = 403 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/363 (26%), Positives = 167/363 (46%), Gaps = 11/363 (3%) Query: 35 DLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHY-LSLRIS 93 +LS L + SI+KIV E+LE L+ E + + GR A+ + + Y L++ I Sbjct: 28 ELSGLTNKSIPSISKIVNELLEDKLLIEDGLAPS-TGGRRAIHYALNAKLNCYILTVAID 86 Query: 94 RGEIFLALRDLSSKLVVE-ESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAIT 152 + + + DL +K V + E L I+S I++ +H + + I ++ Sbjct: 87 QHYTSVIVYDLHNKEVTPVHTIENHLDHPEEAFSNIVSLINELLTKHHLSADNILGIGVS 146 Query: 153 LPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGA 212 +PG +D +G ++D + + + E+ +P +I++D +A +AE FG ++ Sbjct: 147 MPGFVDNVSGTNGS---FKDFQLFNIKKEFERVFAIPTFIENDSTAIAIAEQNFGKAKEI 203 Query: 213 RDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVD 272 + + + VG G+I D L S E H + K C CG GCLE AS+ Sbjct: 204 SHALIINVGWGVGLGIIVDNKLFRGFSGYAGEFSHIPLSKSKKMCSCGKTGCLEVEASLS 263 Query: 273 SILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILA 327 + + + RL S++ Q L AAL GD LA + +G+ +A Sbjct: 264 AAVAHLEERLATGEKSVIQYEDSQNQLQKAQLLINAALGGDQLAISALNKSAYMLGKGIA 323 Query: 328 IMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGA 387 ++++ NPQKI+I ++A IL P I +I + +P S +E + N + A Sbjct: 324 TLIHIMNPQKIIISGRGAEAGKILMPQIQTAIHEFCIPKISNKTVLEISDMKNAQLIGTA 383 Query: 388 ALV 390 ++V Sbjct: 384 SIV 386 >UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V137_ROSS1 Length = 408 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 109/403 (27%), Positives = 187/403 (46%), Gaps = 29/403 (7%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 + N+ V R+I + +SR D++R L +++ +V E++E L++E ++ GR Sbjct: 14 RNHNSRLVLRVIYEDEAISRADIARKTGLTRTTVSAVVNELIEQGLIEETGAGQSSG-GR 72 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA--LKDDLP-----LLD 126 + L V E+ +L +I AL D+ + S L +DLP LLD Sbjct: 73 LPILLRVVHESHCVAALSFEDTQIVGALVDMRGGIQRRVSVPLQGYRPEDLPGYLTQLLD 132 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 + + + I +++PGI+D G+V R + V + PL + L+ Sbjct: 133 DLTA----------DPAPHILGIGLSMPGIVDPVRGMVRRAVNFGLV-DTPLRQLLQDQY 181 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 +PVY+ + +AE +FG + +++ + I VGAG++ +G L EIG Sbjct: 182 RLPVYLDNAARLTALAEYMFGDGAASGNLVVISIGVGVGAGIVLNGALFSGDGFGAGEIG 241 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQS-----MSSMLHGQPLTVDSLC 301 H V G RC CGN GCLET+ASV +I+ A+ RL S + ++ C Sbjct: 242 HVVVADNGIRCNCGNVGCLETVASVTAIVRAAR-RLATDPSSRLRSLASAAAAIDFNTFC 300 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 +A GD I+T VG ++G +A +V L N ++I++ ++ L + S+ + Sbjct: 301 RALEEGDDGVAGIVTEVGRYLGIAVAHIVGLLNVERIVLTGAIAALGPPLLEAVKTSLAR 360 Query: 362 QALPAYSQHISVESTQFSNQGTMAG-AALVKDAMYNGSLLIRL 403 AL + V+ + + G AA+V D + L+RL Sbjct: 361 HALAPLAAMTRVDLVPERHDAVLLGIAAMVLDHEFG---LLRL 400 >UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT5_ACIBL Length = 347 Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 113/241 (46%), Gaps = 9/241 (3%) Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 I H+ + H K L I I +PG ID + G V P P+ + +E G Sbjct: 50 IRHVTTKYQDHGK----LIGIGIGVPGFIDMDTGTVRESPNLPGWSNYPVHKDIESRLGT 105 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 V +++D +A M E GA R D++ + VG G+I G L H + E+GH Sbjct: 106 KVILENDANAAAMGEKWLGAGRDTDDMVMYTLGTGVGGGIIMAGRLWHGMNGMAGELGHH 165 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQP-----LTVDSLCQA 303 V P G C CGNHGCLE AS +++ +A+ + +S L + + Q Sbjct: 166 TVLPDGHICGCGNHGCLEQYASATAVVRMAREAVANGLSDALANASRNDVEFSSKVIYQL 225 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A++GD A++I VG +G +A MVN N +IG ++ A D + + +R+++ Sbjct: 226 AIQGDKAAQEIFNTVGHSIGIAVANMVNALNFPMYVIGGGVASAWDAFHNPMMEEVRKRS 285 Query: 364 L 364 Sbjct: 286 F 286 >UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n=3 Tax=Bacillaceae RepID=Q8ELU2_OCEIH Length = 400 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/385 (24%), Positives = 183/385 (47%), Gaps = 26/385 (6%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +KQ N V+ I Q P+SR D+++ L ++++ +V E++ L+ E+ E+ Sbjct: 12 VKQENKSLVFNTIRQNSPISRADIAQQLGLNKSTVSSLVSELINEELIGEVGPGESSGGR 71 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 RP V L A + + + + I L DL ++ QE D+L + I+ H+ Sbjct: 72 RP-VMLFFNNTAGYSIGIDLGVNYILGVLTDLQGNIL---EQEQVTFDNLTY-EEILVHL 126 Query: 133 DQFFIRHQKKLERLTS--------IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++ +KL +TS I + +PGI++ E I+ + + + L E LE Sbjct: 127 NEVI----QKLITMTSKSPYGVIGIGVAVPGIVNKEEKILLAPNL--NWRNISLKEELEN 180 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +PV I+++ +A E FG + ++++ V + +G G++ + L + E Sbjct: 181 QFNIPVIIENEANAGAYGEVQFGIGKENKEIVYVSVGVGIGVGLVLNNQLYKGNNGFSGE 240 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT-VDSLCQA 303 +GH +D +G +C CG+ GC E AS ++L+LA+ + + P +D + Q Sbjct: 241 MGHMTIDAHGAKCSCGSEGCWELYASEKALLQLAK------RNKIYTTDPYDLLDHMIQL 294 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A D +A + + ++ + ++N FNP++++IG+ +S A + + DSI Q+ Sbjct: 295 AKNNDSVALEAFNEISKYLAIGINNIINSFNPEQVIIGNRMSAAKKWIEKPLLDSINNQS 354 Query: 364 LPAYSQHISVESTQFSNQGTMAGAA 388 L + + ++ + + G A Sbjct: 355 LWFSQKDLKIDFSSLNTHSNALGMA 379 >UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD Length = 330 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 89/319 (27%), Positives = 146/319 (45%), Gaps = 12/319 (3%) Query: 82 TEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD-RIISHIDQFFIRHQ 140 ++ W Y+ + + I +A + ++V + +D L+ I +D+ H Sbjct: 2 SDRW-YVGVDVGGTTIKMAFLTTAGEIVDKWEIPTNKQDGGALITTNIADALDKRLSGHH 60 Query: 141 KKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWT 200 K L I + PG I+ + G ++ ++ PL + LE+ T +PV + +D + Sbjct: 61 KSKSDLIGIGLGAPGFIEMDTGFIYH-AVNIGWRDFPLKDKLEEETKLPVIVDNDANIAA 119 Query: 201 MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR-CYC 259 + E GA GA++++ + + VG G++ +G++LH + EIGH V P G C C Sbjct: 120 LGEMWKGAGDGAKNMLLITLGTGVGGGIVANGNILHGVNGMAGEIGHITVIPEGGAPCNC 179 Query: 260 GNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLLAKD 313 G GCLET+AS I +A + + S L HG LT + AA D A Sbjct: 180 GKTGCLETVASATGIARIATEGVTEHKESQLALDYDKHGV-LTAKDVFSAADASDAFALS 238 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 ++ + ++G +A + N NP+KI+IG +SKA D L I ALP + Sbjct: 239 VVDHIAYYLGFAIANLANALNPEKIVIGGGVSKAGDTLLKPIKQHFEAYALPRVADGAEF 298 Query: 374 ESTQFSNQ-GTMAGAALVK 391 N G + G LVK Sbjct: 299 RIATLGNDAGVIGGGWLVK 317 >UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID=A6WEF3_KINRD Length = 390 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 170/381 (44%), Gaps = 38/381 (9%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 Q + N V L+ GPVSR DL+R L ++++IV ++L LV EL ++ G Sbjct: 33 QARAHNRSVVLGLLFHEGPVSRADLARATGLTRVTVSEIVGDLLTDGLVAELGLRPEGRV 92 Query: 72 GRPAVGLVVETEAWHYLSLRISR-GEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRII 129 G+PA+ + + H +++ + R +A+ DLS +V E + ++ L+ + D Sbjct: 93 GKPAMMVGLRAAEHHVVAVDLQRLPAARVAVLDLSGTVVSETTADVTGLRGE----DATA 148 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVH--RMPFYEDVKEMPLGEALEQHTG 187 + D +R+ + I PGI+D +V R+ + + +PL E L G Sbjct: 149 ALEDLCRAGIAGAPQRVVGVGIGTPGIVDATGRVVESARLGW----RSVPLAERLSHALG 204 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 V V++ +D +AE +G + + V + VGAG++ DGHL+ + EIGH Sbjct: 205 VGVHVANDADTAALAEFTYGEAS-PSGFMVVAVGQGVGAGLVLDGHLVRGHRLAAGEIGH 263 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 VDP G+ C CG GCLETI +A L+++++ R Sbjct: 264 LTVDPRGEPCECGRRGCLETI--------VAPAYLDRTLAG-----------------RT 298 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + + G +G +LA +V + +++++ P L ++++ LP Sbjct: 299 PARRRSALRDAGHRLGAVLAPVVAALDLEEVILTGPAELLDGPLLEAARETVQTTCLPTE 358 Query: 368 SQHISVESTQFSNQGTMAGAA 388 V Q G + GAA Sbjct: 359 GTAPQVRMAQLGANGVLQGAA 379 >UniRef50_B3YF83 Putative ROK family protein n=2 Tax=Salmonella enterica subsp. enterica serovar Kentucky RepID=B3YF83_SALET Length = 390 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 177/375 (47%), Gaps = 28/375 (7%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 K+ + V L+ GP S+ +SR L+PA + +V+++ E + ++I R Sbjct: 8 KRKSVSLVRELLLNEGPHSQASISRKTGLSPAMVNYVVKKLRE---LGNVDIHWVNGR-E 63 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR---IIS 130 V L+ +T Y+S+ ++ +I +L S+ + E + + P + ++ Sbjct: 64 GIVSLISKTG--RYISILVAVDKISCSLFSFESEQRFD--YECFVDQNSPEENNPHAVVQ 119 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIV-----HRMPFYEDVKEMPLGEALEQH 185 I+ H+ + ++ +AI++ +D + R+P + D+K + E+ Sbjct: 120 IINDLLKNHELSIGDISGVAISIVAPLDINGETIISWSAGRLPGWCDIK---IKSFFERE 176 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 +P+ I +D + +AE +G+ +G + I + +G G+I + H+ G+ E Sbjct: 177 LQLPIIIGNDANHSALAEWSWGSGKGVENFIYISCSRQIGGGIIINNHIYKGGNGMAAEF 236 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH +D G C+CG GCL T S +I+ + L++ S ++ LT + AA Sbjct: 237 GHLIIDNSGAVCFCGCRGCLTTFISERAII----MTLSK---SEIYKNSLT--EIILAAA 287 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 GD+ + ++ G H+G+ LA +V + P I IG LSKA I F + +I +Q L Sbjct: 288 EGDVACQRVLFDAGRHLGKALANIVKILAPDVISIGGDLSKAGAIFFDSVISTIEEQNLG 347 Query: 366 AYSQHISVESTQFSN 380 S + ++S F++ Sbjct: 348 TTSPTVDLKSAHFAD 362 >UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178870E Length = 413 Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 86/387 (22%), Positives = 171/387 (44%), Gaps = 10/387 (2%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 +K N + L+ G +++ +++ L ++ + E+++ L+ E + +R Sbjct: 11 HVKNLNRIGIIALLRDYGSLTKAEIAAKMNLTFTAVNNLTDELMKDRLIAEAGFYDESSR 70 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR L + + + + + IS + A+ +L K ++++ + + +I Sbjct: 71 GRKPKLLSLNSGDIYTVGVHISASSVRAAVINLQGKAMMDKYSPFEDNANRGSVVNVIIS 130 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 Q + R+ I + PG +D G + P + ++ L +E++T +P Sbjct: 131 TIQAVLDESGLKSRIIGIGVGAPGPLDPVQGKILSPPNLPGLHQVRLKGLIEENTELPTQ 190 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 I+ D + + E +G R ++ V D +G+G+I + + EIGH +D Sbjct: 191 IEKDANVMALGELWYGNGRHFNHLVYVDADIGIGSGLIFNQKIYQGCPFGAGEIGHCTID 250 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML--------HGQPLTVDSLCQA 303 G RC CGN GCLE IAS +I+ L + S L HG L + + A Sbjct: 251 IDGPRCNCGNTGCLEAIASGMAIVRRVGEELRRGAGSSLQSSFDGNDHG--LDITDVITA 308 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 + GD LA +++ +VG LA ++NL P+ I+IG L+ F + ++ ++ Sbjct: 309 GVDGDPLAANMLNESARYVGISLANVINLLTPETIIIGGVLANRYPDYFTYVRETSYNRS 368 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALV 390 L ++ I ++ ++ + GA + Sbjct: 369 LSSFHDKIMLQPSELGEYAGVIGAGTI 395 >UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacterium RepID=C6JR29_FUSVA Length = 388 Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 85/385 (22%), Positives = 175/385 (45%), Gaps = 27/385 (7%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 K N +R + ++ S++++S+ ++ ++TKI+ L L+ E G GR Sbjct: 10 KLRNENRTFRFLVEVREFSKLEISQYLNISIPTVTKILERFLTNKLIYETGTNN-GKLGR 68 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEE--SQELALKDDLPLLDRIISH 131 A+ +A+ + +++ I + L +L K++ + +E ++ L +I+ Sbjct: 69 KAIKYQFNPDAYFSIGIKVEMNHISMVLINLDGKILKQTVVKEEFINSENFVFL--VINE 126 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY----EDVKEMPLGEALEQHTG 187 + +F KK E + I I LPGI++ EN ++ + +D+KE +E+ G Sbjct: 127 LKKFLWEFDKK-EFIKGIGIVLPGIVNPENNMIKLGGNFSLLNQDMKE------IEEEFG 179 Query: 188 VPVYIQHDISAWTMAEALFGAS--RGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 +P++++++ +A + E + S + ++++ V ID +G+G+I + L + EI Sbjct: 180 LPIFLENEANAGAIGEYIVNHSGLQTKKNILFVSIDTGIGSGIIVENQLYRGKGNKSGEI 239 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH + P G +C CG+ GCLE S L L + + + + Q Sbjct: 240 GHIPIIPNGDKCACGSEGCLEQYCS--------NLALMKEFEKEFQCEIKEYEDIFQEKF 291 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 G+ K I+ + + + + N KI+IG +S + P++ + I + Sbjct: 292 IGNEKGKKILERYTWILALGIKTALMMLNSDKIIIGGKISDYKEYFEPMLKEIIFSNNIF 351 Query: 366 AYSQHISVESTQFSNQGTMAGAALV 390 + I +E + S+ + GAA + Sbjct: 352 SNDADI-LEFSSLSDNANLLGAAFI 375 >UniRef50_B8E378 ROK family protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E378_DICTD Length = 376 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 98/390 (25%), Positives = 188/390 (48%), Gaps = 34/390 (8%) Query: 17 NAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAV 76 N V ++ ++GP SR +L+R+++L +I++IV E++E +++ E+ E +RGR Sbjct: 14 NKNLVLEILIKIGPKSRAELARISKLTKTAISEIVDELIEKNILIEVGKVET-SRGRRPT 72 Query: 77 GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFF 136 L + E L++ +S E + + + + K+ + + K+DL L ID Sbjct: 73 KLTINPEL-KVLAIDLSGLEGRVGVVNANGKIEEDRYHPIEKKEDLFQL------IDPLL 125 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL-EQHTGVPVYIQHD 195 I+++ + +I++++PGIID NG V + + K L E L E++ P+Y++ D Sbjct: 126 IKYK---NNVVAISLSVPGIIDKYNGEVI-LSVGLNWKNFKLKEFLKEKYPNYPIYMEKD 181 Query: 196 ISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP-YG 254 ++ ++E FG + + ++ + +G G+ G+++ ++ EIGHT V G Sbjct: 182 TNSGLLSELWFGEGKNFNILFYLLFEKGIGLGIYYKGNIIEGFNNIEGEIGHTIVSKEIG 241 Query: 255 KRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKD- 313 ++C+CGN GCLE+IAS+ I E + L + SL +A + K+ Sbjct: 242 EKCWCGNKGCLESIASIPKIQE----------------KILDLGSLEKALINYIQDNKNS 285 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADIL---FPVISDSIRQQALPAYSQH 370 ++ + +G LA +++ P+ I I DIL ++ D + + Sbjct: 286 VLQEIFEFLGISLANTIHILAPEAICISGNRGMTKDILNLFTKILKDKVDKYVFEYLKDK 345 Query: 371 ISVESTQFSNQGTMAGAALVKDAMYNGSLL 400 I ++ N G + GA ++ Y LL Sbjct: 346 IYFYTSPLGNDGLLIGAGILGFINYFRELL 375 >UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5VW31_BRUO2 Length = 402 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 169/371 (45%), Gaps = 35/371 (9%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE--IKEAGNR--GRP 74 G V +++ GP SR +L+R L+ ++T + ++L+ + E + + +G+ GRP Sbjct: 6 GMVLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMPGRP 65 Query: 75 AVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQ 134 V + + A + + I + +A+ DL+++LV + + A D+ L + + + Sbjct: 66 PVSVRLVPSAHYVAGVYIGAEAVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTADVLR 125 Query: 135 FFIRHQK-KLERLTSIAITLPGIIDTENGIVHR---MPFYEDVKEMPLGEALEQHTGVPV 190 ++ + L L I + +PG +D V R + +++ +A+E +P Sbjct: 126 NLVQAKGISLGSLVGIGMGVPGPVDQ----VRRRNLLSINTGWRDVAFADAMEAELNIPT 181 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 ++H+++A +AEA +G +G V+ V + G G++ DG G VE+GH Q+ Sbjct: 182 VVEHNVTAMALAEAHYGIGQGCPAVLYVYL----GTGLVVDGMPFRPGGHGAVELGHIQI 237 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 DP G C CGN GCLET S + E R S +L AAL + Sbjct: 238 DPQGALCACGNRGCLETFVSERVLRE----RGAGSAEPLL------------AALARNPT 281 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 D + G H LA VNL P I++G ++A + + + + + LP Sbjct: 282 LHDEVAG---HFTTALANAVNLLTPDLIVLGGHFAEAPEAFYARLRCDLPPRVLPHMRDV 338 Query: 371 ISVESTQFSNQ 381 + +E F N Sbjct: 339 LRIERGGFGNN 349 >UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID=Q724N5_LISMF Length = 404 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/392 (21%), Positives = 181/392 (46%), Gaps = 18/392 (4%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G+ D IK N V LI + G ++R ++++ +++T I+ ++ + ++ LE Sbjct: 5 RKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGII--LEG 62 Query: 66 KEAGNRGRPAVGLVVETEAWHYL-SLRISRGEIFLALRDLSSKLV----VEESQELALKD 120 E + G LV + + ++ S+++ ++ AL DL+++++ + S E ++ Sbjct: 63 AETSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDLNAEIMENTSIPFSSEKKPEE 122 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHR--MPFYEDVKEMPL 178 + L+ + + + + + + L + I + G+++ G V R M +E+V + Sbjct: 123 AIELIAKNVKKMCE-----NRDMNHLLGVGIAISGLVNRRKGTVIRSTMLGWENVALEAM 177 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 A +PVY+ +I+ +T+AE G + + + V + +G V+ + + + Sbjct: 178 LHAY--FPDIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVGAGLGLSVVINRQIYYGA 235 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 E GHT + P G +C+CG GCLE AS + +S L + D Sbjct: 236 QGGAGEFGHTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGEELKEAYPTSEL--KDFHFD 293 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + ++A GD +A +++ +G ++G + ++N FNP+K++I D+ I + Sbjct: 294 KVAKSARAGDEMATELMGKMGEYLGYGIRNIINTFNPEKVIIVGEGLHHRDLFLTKIDEI 353 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 Q + +T + + GAAL+ Sbjct: 354 ASQNFFSGAGFETEITTTSLEDPAWLQGAALL 385 >UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetales RepID=Q0SE61_RHOSR Length = 400 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/396 (26%), Positives = 176/396 (44%), Gaps = 20/396 (5%) Query: 17 NAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAV 76 G V+ LI +R ++ L L+ ++ V + + LV E E + GRP V Sbjct: 15 TGGDVFALIRAGQATTRTEIGTLTGLSRTAVAARVSSLQASGLVVERE-EGVSTGGRPPV 73 Query: 77 GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFF 136 L +A LS I R LA+ DL+ ++V E E + L +I+ Q Sbjct: 74 KLSFHVQAGVVLSAAIGRSRTQLAICDLAGDVIVAEDVEQEIGTSPAELMPVIA---QRL 130 Query: 137 IRHQKKLE----RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 I ++ L R I I+LPG +DTE G P +PL L T PV++ Sbjct: 131 IALRESLGETAGRTVGIGISLPGTVDTERGCSLNSPMMSGWDGVPLQPFLADVTDAPVFV 190 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +D + +AE G R D++ + +GAG+++ G L + EIGHT+ Sbjct: 191 DNDANVMVLAER-RGERRDFADMLLIKASTGLGAGLVSGGVLQRGALGAAGEIGHTKTAA 249 Query: 253 Y-GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 G C CG+ GC+E +A +++ L + + H + + AL GD A Sbjct: 250 AQGVVCRCGDVGCIEAVAGGWALVR----NLQEQGREVTH-----IRDVITLALAGDAEA 300 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 + +I G +G +L+ +NL NP+ +++G +++A D + +++ A+ +Q + Sbjct: 301 RRMIRESGRQIGEVLSGAINLLNPEVVIVGGDMAQAYDTFVAGLRETLYGNAIAVATQQL 360 Query: 372 SV-ESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 + T G + A + D + + + RLL G Sbjct: 361 QILPWTHGELSGVVGSATMALDHVLSVRAVDRLLAG 396 >UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BCC4_9GAMM Length = 394 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/347 (26%), Positives = 170/347 (48%), Gaps = 10/347 (2%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREML-EAHLVQELEIKEAG 69 +QI+ N + + GP++R+DL + +L+PA++T I E+ EA L++ E Sbjct: 7 EQIRLANKKQIIHYLRVHGPIARVDLGQALKLSPATVTAITSELQQEARLIEHPATTEKT 66 Query: 70 N-RGRPAVGLVVETEAWHYLSLRISRGEIFLALRD----LSSKLVVEESQELALKDDLPL 124 N RGRP V + + +A+H L L++S E+ + L + +S ++V++ AL ++ L Sbjct: 67 NTRGRPRVLIDLAPDAFHVLGLKLSINELKMHLGNHKGQVSDEMVIDLDTR-ALSEE-GL 124 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 D I S + +F +R ++ I + G+++ NG + P V+++PL LEQ Sbjct: 125 FDAIASAVRRFNASVPAH-KRPKALGIAVQGVVNGLNGEIIWSPALA-VRKVPLKHELEQ 182 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +PV I +D + TMA + D +++ + +G G++ +G L + E Sbjct: 183 RIQLPVTIANDANCLTMAIRHQRRYQSLTDFAVIMLGYGIGMGMVINGELYLGHHGAAAE 242 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 GH++ P G +C CG GC+E ++ A S + LH ++ L A Sbjct: 243 FGHSKYYPEGAQCLCGKRGCIEAYVGDYALYRDASALFPLSWDNSLHPTEDSMQVLVNKA 302 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADIL 351 +D+ G +G ++ ++ L + +KI+I P S+A ++ Sbjct: 303 ESDSKELRDLFQRAGRVLGHGISNLIALLSLEKIIISGPGSRAYHLM 349 >UniRef50_B9K8B7 Glucokinase n=12 Tax=Thermotogaceae RepID=B9K8B7_THENN Length = 317 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 128/250 (51%), Gaps = 6/250 (2%) Query: 149 IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGA 208 + I PG ID ENG+V P + D +PL + + + T ++++D +A+ + E FGA Sbjct: 64 VGIGSPGSIDRENGVVRFSPNFPDWHNVPLTQEISKLTKKKAFLENDANAFVLGEKWFGA 123 Query: 209 SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI 268 +G ++ + + +G GVIT G LL E+GH V+P G C CG GCLE + Sbjct: 124 GKGHDHIVALTLGTGIGGGVITHGQLLTGKDGIGAELGHVVVEPNGPMCNCGTRGCLEAV 183 Query: 269 ASVDSI---LELAQLRLNQSMSSMLHGQPLTVDS--LCQAALRGDLLAKDIITGVGAHVG 323 AS +I L + S+ L G P D+ L AA +GD A I V + Sbjct: 184 ASATAIRRFLREGYKKYRDSLVYKLAGSPEKADAKHLFDAARQGDRFALMIRDRVVDALA 243 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY-SQHISVESTQFSNQG 382 R +A +++FNP+ ++IG +S+A +LF + + + +P++ + V S + G Sbjct: 244 RAVAGYIHIFNPEIVIIGGGISRAGSVLFDPLKEKVIDYIMPSFVGTYEIVASPLVEDAG 303 Query: 383 TMAGAALVKD 392 + A+++K+ Sbjct: 304 ILGAASIIKE 313 >UniRef50_D1BZ00 ROK family protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BZ00_XYLCX Length = 383 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 174/365 (47%), Gaps = 37/365 (10%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 GP SR DL+R L +++ ++ ++ LV+EL ++ G+PA+ + + T+A+ + Sbjct: 44 GPTSRADLARATSLTRVTVSDLINVLMAEGLVEELGVQRGRGVGKPAILVGMRTDAFQIV 103 Query: 89 SLRISRGEIFL-ALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRH-QKKLERL 146 ++ +S + A+ L+ + VV S LA+ D D +++ I++F R + + Sbjct: 104 AVDLSDDTVMRGAVLTLTGEAVVRRS--LAVDDRTG--DELVALIERFARRLVAAATQPV 159 Query: 147 TSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALF 206 + I PG+ID +G VH P + V ++PL L G+PV + +D + E + Sbjct: 160 IGVGIGAPGVIDG-SGRVHEAPNRKWV-DLPLAAILSDRLGLPVQVANDADVAALGEYTY 217 Query: 207 GASRGARDVIQVV-IDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCL 265 G GA D + VV + VGAG++ DG ++ +S+ E+GH V G+ C CG GCL Sbjct: 218 G---GASDSLLVVTVGQGVGAGLVVDGSRVYGTNSAAGELGHVTVVDDGEECACGRRGCL 274 Query: 266 ETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRI 325 ET+ S + L A L+ ++M ++ VG +G Sbjct: 275 ETLLSAPN-LRRAVENLDADEATM------------------------VLARVGRILGTT 309 Query: 326 LAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMA 385 LA +V+ N ++L+ P L ++ ++ +PA S + + + +A Sbjct: 310 LAPVVSALNLGEVLLCGPADLLDGALREAAHATVVERTMPAVSAGLRLRMATLDDDVVLA 369 Query: 386 GAALV 390 GAA++ Sbjct: 370 GAAVL 374 >UniRef50_A6P194 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P194_9BACE Length = 316 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 134/255 (52%), Gaps = 8/255 (3%) Query: 143 LERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMA 202 ++ + S+ I PG+ID +NG+V D +PL E L+ G VYI++D +A + Sbjct: 59 MDDIESVGIGSPGVIDPKNGVVEYWSNL-DFHNVPLAEMLKARLGKEVYIENDANAAALG 117 Query: 203 EALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNH 262 E GA +G++ ++ + + VG G + DG L + + +E+GH ++ G+ C CG Sbjct: 118 EYAAGAGKGSQSMVAITLGTGVGGGAVLDGKLYTGFNYAGLEVGHFVIEYNGRLCTCGRR 177 Query: 263 GCLETIASVDSILELAQLRLNQSMSSML----HGQPLTVD--SLCQAALRGDLLAKDIIT 316 GC ET AS +I++ A+ R+ + ++L G P V+ ++ AA +GDLLAK+++ Sbjct: 178 GCFETYASATAIIKRARERMQDNRETLLWKLCDGDPEKVEARTVFDAAAQGDLLAKELVE 237 Query: 317 GVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF-PVISDSIRQQALPAYSQHISVES 375 +++ + ++N+F P+ +G ++ A + L PV + R+ + + Sbjct: 238 EYQSYLACGITSLINVFQPEVFCVGGGVAGAGETLMGPVRAIVDREDYARDSKRRTILTL 297 Query: 376 TQFSNQGTMAGAALV 390 Q N + GAAL+ Sbjct: 298 AQLGNDAGIIGAALL 312 >UniRef50_C1A9L9 Glucokinase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9L9_GEMAT Length = 331 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 128/256 (50%), Gaps = 8/256 (3%) Query: 125 LDRIISH-IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 L R+++ ID + + + PG +D G V + P D L + Sbjct: 49 LARMVNETIDATMQETGASRDAFIGVGVGAPGTVDRATGRVLKAPNL-DWHNRELAHPMS 107 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 Q TG+PV I +D + T E GA+RG +VI V I VG G+I D + H S + Sbjct: 108 QLTGLPVQIDNDANCATYGEWWLGAARGGVNVIGVTIGTGVGGGIIVDRKVYHGSSDAAG 167 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTV 297 EIGHT +D G+RC CGN+GCLE AS +I A+ L SSML +T Sbjct: 168 EIGHTTIDLNGRRCGCGNYGCLEAYASGSAIAGRAREALTNDESSMLRTMVDGDLTRITA 227 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 + +AA +GD +A +I+ +G LA ++N+FNP ++I +++A D LF + Sbjct: 228 AVVYEAAGQGDAVALEIVRDTARVLGAGLANLLNIFNPDVVVIAGGVTQAGDALFEPLRK 287 Query: 358 SIRQQALPAYSQHISV 373 +R++A + S+ + Sbjct: 288 EVRRRAFKSVSERCHI 303 >UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K724_THENN Length = 388 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 94/390 (24%), Positives = 185/390 (47%), Gaps = 39/390 (10%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 +IK N + ++I + P+SR D+S + L P+S+T++ +E+++ ++E+ + Sbjct: 17 RIKILNKKTILKVIHENHPLSRSDISEITGLTPSSVTRLTKELIDEGYIREIGTMGKNSP 76 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR V L ++ EA +LSL +F ++++ + E+ L+ + Sbjct: 77 GRRRVLLDLKKEA--FLSL------VFDIGVNITTYGIGFFDGEVELRGTF----NTPKN 124 Query: 132 IDQFFIRHQKKLER------LTSIAITLPGIIDTENGIVHRMPF--YEDVKEMPLGEALE 183 ++FF ++ ER +T I+ ++PG++D E + P +E+V L E Sbjct: 125 PEEFFKTAREIYERISREHSITRISFSVPGMVDLEEKKILLAPNLGWENVNIEDLLEV-- 182 Query: 184 QHTGVPVYIQHDISAWTMAEALFGAS-RGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 VPV ++ + +AE R + + ++I VG G++ DG + S + Sbjct: 183 ---DVPVLADNEANLSMLAEKYHSEDLRNVEEAVFIIIREGVGTGLMVDGKIFRGPSFTA 239 Query: 243 VEIGHTQVDPYGKR-CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E GH V+ Y R C+C N GC E ++S++ +E L G+ +++ Sbjct: 240 GEAGHMTVNMYSDRQCHCSNWGCWELVSSINWAIE--------QYGKELEGRN-SIEKFQ 290 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + D AK ++ ++ + +VN+ NP+ +++G + D F +I D +RQ Sbjct: 291 ALKQKND--AKRVLMRFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFFSIIEDFVRQ 348 Query: 362 QALPAYSQHISVESTQFSN-QGTMAGAALV 390 +AL A +++ + T F N + GAA++ Sbjct: 349 RALKAAVRNLKIRPTAFRNISSNLVGAAVL 378 >UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bifidobacterium RepID=C6A8T4_BIFLB Length = 401 Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 162/373 (43%), Gaps = 27/373 (7%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 + + N + + G SR +++ L PA+++KI +L + + E E G Sbjct: 12 LSEYNRARTLQYLHHHGIASRAQIAKALHLTPAALSKISNHLLASGAIVETGALE-GKGN 70 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIISH 131 R ++GL V A+ L ++ +R I + L DL+ K +P ++ + + Sbjct: 71 RRSIGLAVNARAFQVLGVKFARSLIEIGLFDLAGKPSFIRELPTVENTTIPQAIESLHAE 130 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 I + H L +I + +PG + G + +++ E VPV Sbjct: 131 IRRLLAEHPHIL----AIGMAVPGPYLRDRGHTAVVSSMGQWRQVNFRAEFEHAFDVPVI 186 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 I+ D A +A+ LF + ++ ++ +G GVI G +++ + EIGH +D Sbjct: 187 IEQDARAGALAQYLFDPNPANENLAYYLLGEGIGLGVIDHGTVINGSLGAATEIGHVSID 246 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS----------LC 301 GK C CGN GCLE S +I E +ML L DS L Sbjct: 247 VNGKACDCGNVGCLERYCSAVAIHE-----------AMLGNGMLATDSRLTHREACAELF 295 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A GD A++++ +G VG + N FNP +I+IG +++A + L + + + + Sbjct: 296 ARAQSGDGQARELVERIGTFVGYGCVTICNAFNPSRIVIGDIVAQAGEPLLQRVREVVGE 355 Query: 362 QALPAYSQHISVE 374 + +P +Q +E Sbjct: 356 RVIPEITQSTQIE 368 >UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESH3_9FIRM Length = 400 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 93/381 (24%), Positives = 167/381 (43%), Gaps = 15/381 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 IK N +Y+LI+ +SR ++ +L+ +++ +V EM++ V + E+ +G Sbjct: 9 IKDNNKKQIYQLIEDFPGISRTQIAEQLKLSKTTVSALVDEMMQEMFVIDEGASESNRQG 68 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R L V + + L + + +AL D + +V+ +E +K+ L + + Sbjct: 69 RKPNSLTVNNSTNYVIVLNWHKDNLEIALVDSAMNIVL--CREYDMKNTGDALAELKGYF 126 Query: 133 DQFFIRHQKKLE-RLTSIAITLPGIIDTE-NGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 ++F R + ++ + + + +PG+ID + + I+ + E + G P+ Sbjct: 127 EEF--REAQCVDIHVMGVCVIVPGMIDEKHDEIISVVLPTESQGNYKISRLRSMLDGYPL 184 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 I +D + + AE FG G + I + I+ VGA +I DGHLL S + GH V Sbjct: 185 AILNDTACFAYAETAFGKLDG-ENYIYININDGVGAAIIHDGHLLSGASGMATQFGHFSV 243 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMS---SMLHGQPLTVDSLCQAALRG 307 D G C CGN GCLE + I ELA RL + G+ L L Sbjct: 244 DRNGYPCACGNRGCLE-----NQIGELALPRLFEEFGLDVPKSSGEKLLFKDLAALVRAE 298 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D A +++ + L + LF+P+ ++IG K D ++ ++Q + Sbjct: 299 DEDALKLMSYMAEDFAYALCNAITLFHPELVIIGGIGRKLGDRFLELLKGKMQQFGFRQF 358 Query: 368 SQHISVESTQFSNQGTMAGAA 388 + V T+ + GAA Sbjct: 359 VSDVDVVYTKLGEASVVRGAA 379 >UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobacterales RepID=C5RVI1_9THEO Length = 315 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 132/256 (51%), Gaps = 9/256 (3%) Query: 142 KLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTM 201 KL L + I PG +D + G+V P +P+ + L GV V +++D +A + Sbjct: 61 KLSDLKGVGIGSPGPLDAKRGVVISPPNLPGWDNVPIVDILSHKLGVKVKLENDANAAAI 120 Query: 202 AEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGN 261 E LFGA +G + + + + +G GVI +G L +S+ EIGH ++ G RC CGN Sbjct: 121 GEHLFGAGKGIDNFVYITVSTGIGGGVIIEGKLYSGENSNAAEIGHHTINFNGPRCNCGN 180 Query: 262 HGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC------QAALRGDLLAKDII 315 +GC E AS +I AQ + +M+ + L D + +AA GD AK+++ Sbjct: 181 YGCFEAFASGTAIARFAQEGIQNGKDTMI--RDLAKDGVVKSEHVFEAAKLGDEFAKELV 238 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 ++G ++ ++ +NP+KI IG +S D+L+ + ++I+++AL ++ V Sbjct: 239 DNEAFYLGVGISNIMAFYNPKKIAIGGGVSTQWDMLYDKMMETIKKKALKPNAEVCEVVR 298 Query: 376 TQFS-NQGTMAGAALV 390 + N G + AAL+ Sbjct: 299 AELGENVGVLGAAALL 314 >UniRef50_UPI0001BC4091 ROK family protein n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC4091 Length = 384 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 89/320 (27%), Positives = 166/320 (51%), Gaps = 17/320 (5%) Query: 30 PVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLS 89 +SRI L++L Q P ++ IV E+L+ +QE+E+ EA GR A L ++ + + Sbjct: 18 KISRISLAKLLQWNPTTVGSIVAELLKKSYIQEVEM-EASTGGRKATLLSLKEDMSPSI- 75 Query: 90 LRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL-DRIISHIDQFFIRHQKKLERLTS 148 L IS FL + S + + E++++ L PL+ ++I + Q + K + + Sbjct: 76 LGISFAPSFLQIGIGSIQGKIFETEKIVLT---PLIIEKIWQFLFQIIDKKLNKWKEIRQ 132 Query: 149 IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGA 208 I++ + G++++E G+ P Y+ + + + + LE+ V++++D+ A + E FG+ Sbjct: 133 ISVIISGLVNSEKGVSIFSPHYQ-WRNIEIKKILEERYQKKVFVENDVRAMALLEKSFGS 191 Query: 209 SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYG-KRCYCGNHGCLET 267 + R+ + + I VG+ + D L S E+GH QV+ G +RC CG GCLE+ Sbjct: 192 CKKKRNFVVLNIGDGVGSSIFIDNKLYIGSYSGSGELGHMQVNAKGLRRCSCGKIGCLES 251 Query: 268 IASVDSILEL--AQLRLNQSMSSMLHGQ-----PLTVDSLCQAALRGDLLAKDIITGVGA 320 S SIL+ +Q++L Q S+L + L+++ A DLLA I Sbjct: 252 EVSNLSILDKISSQIKLGQ--YSILRQKLKRDGNLSIEDFLFALGEKDLLALQIAEESVE 309 Query: 321 HVGRILAIMVNLFNPQKILI 340 + R L +++L NP+++++ Sbjct: 310 MITRALDAIISLLNPERVIL 329 >UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=1 Tax=Streptomyces avermitilis RepID=Q82LB9_STRAW Length = 424 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/359 (26%), Positives = 176/359 (49%), Gaps = 23/359 (6%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 I+ N V R I P SR +L+ L+ A++ +V E+L+ ++ E+ +++ G Sbjct: 18 IRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLGMLTEVGFEDSAG-G 76 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 RP + V + + + I+ + + L DL + +++ + P ++++ H+ Sbjct: 77 RPRGLVAVNSGGGALIGVDIAETYVRVELFDLGLGQLARADEDMRPGESRP--EQVVGHV 134 Query: 133 DQFFIRHQKKL----ERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 + R+ + +++PG +D + GI P + D ++PL L +H Sbjct: 135 AAAVGSVVAQAGVDGARVLGVGVSVPGQVDRDRGIAEYAPNW-DWHDVPLLSLLAEHITH 193 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLL---HAG-SSSLVE 244 P+Y+ + + A +AE FGA+RG D + V N+G GV L H G S+S E Sbjct: 194 PLYLDNPLRACAVAELWFGAARGRGDAVVV----NLGTGVGAGLALGGALHRGVSNSAGE 249 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH--GQPLTVDSLCQ 302 GHT + G+ C+CGNHGC+ET I++ LR +LH Q T+D+L + Sbjct: 250 WGHTTLVLDGRLCHCGNHGCVETYVGAPGIMQ--NLRELSPADPLLHPGDQTATIDALAR 307 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 D +A ++ ++G +A +VNL NP+ +++ S + AA + P++ D +R+ Sbjct: 308 GVAARDPVALKVVRDTARYLGAGIADLVNLLNPEVVVLSSWV--AATLGEPLL-DEVRE 363 >UniRef50_C7MD65 Transcriptional regulator/sugar kinase n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MD65_BRAFD Length = 386 Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/259 (29%), Positives = 134/259 (51%), Gaps = 9/259 (3%) Query: 24 LIDQL--GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVE 81 L+D L G SR +L R + AS++++ RE+ LV E ++ G RGRP+ L + Sbjct: 30 LLDVLLHGRRSRAELGRRIGMTRASLSRLTRELSALGLVAETGVQLDGARGRPSETLEIA 89 Query: 82 TEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQK 141 E +L +++ ++ AL DLS+++V+ ES++L ++ ++D + D+ ++ Sbjct: 90 PEGAQFLGFKLTGTSLYTALTDLSAQVVLIESEQLPSREVGDVVDSMRRATDRL----RE 145 Query: 142 KLERLTSIAITLPGII--DTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAW 199 + RL +I + L G + + E G V + +E PL + L TG+PV I +D+ A Sbjct: 146 RAPRLAAIGVCLAGDVHREPERGDVVSGSSFLGWEETPLQQLLVSATGLPVTISNDVQAL 205 Query: 200 TMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYC 259 T A FGA G R + + + +G G++ DG +H ++GH V RC Sbjct: 206 TTAHHWFGAGHGTRSLAVLGVGEGIGCGIVVDGRRVHGAHGRPGKVGHLAVG-GDARCDQ 264 Query: 260 GNHGCLETIASVDSILELA 278 G+ GC+ A+V ++L A Sbjct: 265 GHRGCVSAYATVPAMLRAA 283 >UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQX8_SACVD Length = 443 Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 100/409 (24%), Positives = 198/409 (48%), Gaps = 20/409 (4%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 HID + V L+ +R ++ R + L +T+ V +++ L++E + + Sbjct: 21 HIDSLAT-----VLDLVRSGAARTRPEIGRRSGLGRTVVTQRVNQLMACGLLEEGALGPS 75 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDR 127 GR L A L+ + I + + DL+ ++ E S++ + +L+R Sbjct: 76 SG-GRAPRELKFRAHAGVILAAELGATSINVGVVDLAGTVLAEHSEDADIAAGPEAVLER 134 Query: 128 IISHIDQFF--IRHQKKLERLT--SIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + +D+ +R ++ LT + I LPG ++ G P P+ + L Sbjct: 135 VEEVLDELLDQVRAEQNDPDLTVWGVGIGLPGPVEFATGRPSAPPIMPGWDGYPVRDRLA 194 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + PV++ ++++ + E G++RG RD++ V I +GAG+++ G L H GS Sbjct: 195 RRYNTPVWVDNEVNTMALGELRAGSARGQRDILYVKIGTGIGAGLVSGGTL-HRGSQGCA 253 Query: 244 -EIGHTQV-DPYGKRCYCGNHGCLETIASVDSI----LELAQLRLNQSMSSMLHGQ-PLT 296 +IGH V D C CGN GCLE A ++ L AQ ++ ++ +L +T Sbjct: 254 GDIGHAAVSDETEVVCRCGNIGCLEAYAGGAALARDGLSAAQEGRSRLLAEVLADTGTIT 313 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + +AA GD + +++T G +G +LA +V+ FNP ++IG ++ A D+L + Sbjct: 314 AADISRAAQSGDRTSVELLTRAGRFIGGLLATLVSFFNPALVIIGGGVAGAGDLLLAAVR 373 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRLL 404 +++ +++LP ++ + + + +++ + GAA +V D ++ L R + Sbjct: 374 ETVYRRSLPLATRELRIIRSTLNDRAGLVGAAFMVIDELFTPERLARWV 422 >UniRef50_D1N7Q5 ROK family protein n=5 Tax=Bacteria RepID=D1N7Q5_9BACT Length = 327 Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 18/262 (6%) Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 D RH+ +RL + ++ G +D+ G++ P E+P+ LE PV + Sbjct: 57 DGMLARHELTNDRLHGLGVSCGGPLDSRAGVIQSPPNLPGWDEVPIVSMLENRFRRPVRL 116 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV-EIGHTQVD 251 Q+D +A +AE FGA +G + + +GAG+I + L+AG L E GH ++ Sbjct: 117 QNDANAGAVAEWKFGAGQGVESMAFLTFGTGLGAGLILN-KRLYAGCCDLAGECGHIRLA 175 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL----TVDSLC------ 301 P+G + G G E S + +LA +R+ + + G P+ T LC Sbjct: 176 PFGPAGF-GKAGSFEGFCSGGGLAQLAAIRVREQLQ---RGIPVEWCPTAADLCAVTAKT 231 Query: 302 --QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 AA GD LA I G +GR LA++V+L NP+ I+IGS +++ +L P + +++ Sbjct: 232 VADAADGGDDLAIAIYRECGEWLGRGLAVLVDLLNPELIVIGSIFARSEALLRPAMEETL 291 Query: 360 RQQALPAYSQHISVESTQFSNQ 381 R +ALPA + + Q + Sbjct: 292 RGEALPAAVERCRIVPAQLGEK 313 >UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=Actinomycetales RepID=D1BD00_SANKS Length = 395 Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 99/382 (25%), Positives = 186/382 (48%), Gaps = 23/382 (6%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 + T AG +++L+ P +R +L+ + A ++I + ++ + LV + + GR Sbjct: 12 RTTGAGDLFQLLRDGQPRTRAELAAVTGQARSTIAARIDLLMASGLVAPAG-EASSTGGR 70 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--DLPLLDRIISH 131 P A L++ + LA+ DL+S ++ E +A+ D D+ +L + Sbjct: 71 PPATFAFSPAARVVLAVDLGATHAHLAVTDLASTVLAELEAPIAIADGPDV-ILGWVAQT 129 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHR---MPFYEDVKEMPLGEALEQHTGV 188 ++ + + L+ L S+ + LPG ++ G MP ++DV ++P G L G Sbjct: 130 GEELVLSTGRTLDDLVSVGVGLPGPVEHSTGRPINPPIMPAWDDV-DVPGG--LSARLGA 186 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 V + +D++ + E G D++ V + +GAG+I+DG L + +IGH Sbjct: 187 SVLVDNDVNIMALGEHRT-EWPGVSDLLFVKVATGIGAGIISDGALRRGAQGAAGDIGHV 245 Query: 249 QV-DPYGKRCYCGNHGCLETIASVDSIL-ELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 V D C CGN GCLE +AS ++ +LA L + S+ V +L +A Sbjct: 246 AVSDRSEVPCRCGNLGCLEAVASGQAVAAQLAATGLAATSSN-------DVVALVRA--- 295 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 GDL A + G +G +LA V+L NP I++G ++ + + L I + + +++LP Sbjct: 296 GDLYASRAVRQAGRDIGTVLAGCVSLLNPSMIVVGGVVASSGEHLIAGIREVVYRRSLPL 355 Query: 367 YSQHISVESTQFSNQGTMAGAA 388 +QH+ + +++ N+ + GA+ Sbjct: 356 ATQHLRIVASRTGNRAGVLGAS 377 >UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PQN5_9ACTO Length = 402 Score = 114 bits (284), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 148/329 (44%), Gaps = 22/329 (6%) Query: 23 RLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG-------RPA 75 R++ Q GP+ R+ ++R L+ A++TK V ++EA V + + G RP Sbjct: 22 RILTQ-GPIPRVQIARRTGLSQAAVTKAVAPLIEAGFVTDEPVAPTEGSGESQLGIGRPV 80 Query: 76 VGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS---HI 132 L V ++ + ++++ + DL++ + L ++ RI+ + Sbjct: 81 SPLTVLADSVSVIGVKVTPTGLIGVTTDLTAGIRTVRHSPLRDSSTETVIPRIVELAREL 140 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 F L I + + G +D +G+V PF +E+PL L + G PV + Sbjct: 141 MDFLDDQANGAGPLIGIGVAVSGDVDAAHGVVRDSPFM-GWREVPLAATLTEELGAPVVV 199 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +D+ A T+AE FG A V I VG G+ +G ++ E+GH + P Sbjct: 200 TNDVRALTVAEHWFGVGVDADSFAVVTIGSGVGCGLYLNGEVVSGAYGVSGELGHLPLAP 259 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQP-LTVDSLCQAALRGDLLA 311 C CG GC+ET+AS D+I LA+ R G+P L + + A GD A Sbjct: 260 GELICTCGRRGCVETVASSDAI--LARTRETT-------GRPELDLAGAIELAHAGDEHA 310 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILI 340 ++ G +G LA MVNL P+ ++I Sbjct: 311 REAFDQAGEVIGSALAAMVNLVGPELVVI 339 >UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium RepID=A5N8K8_CLOK5 Length = 317 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/312 (22%), Positives = 154/312 (49%), Gaps = 11/312 (3%) Query: 83 EAWHYLSLRISRGEIFLALRDLSSKLVVEES-QELALKDDLPLLDRIISHIDQFFIRHQK 141 E + + + + +I AL D ++ + + A + + +LD II I++ Sbjct: 2 EEKYVIGVDLGGTKIAAALVDFKGTIICKYTLPTKAEEGEKYILDNIIKIIEKVVNFGGV 61 Query: 142 KLERLTSIAITLPGIIDTENG---IVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISA 198 +++ I + PG +D + G +PF K + L+ H +P+++ +D +A Sbjct: 62 CSKKIKCIGLGAPGPLDIDKGKIICTPNLPF----KNFNIVSPLKNHFKMPIFLDNDGNA 117 Query: 199 WTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCY 258 +AE +FGA +G +++ + + +G G I +G + + + +EIGH +D G C Sbjct: 118 AAIAEHMFGAGKGINNMVFITVSTGIGGGAILNGQIYRGNTKNALEIGHMTLDAQGPLCN 177 Query: 259 CGNHGCLETIASVDSILELAQ--LRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIIT 316 CGN GC E +AS +I A+ +++ + + L+ + +T + + A GD ++++I+ Sbjct: 178 CGNFGCAEVMASGTAIAREAKKAVKMGYNTTLALY-KNITSKEVFKEAQLGDSISQNILD 236 Query: 317 GVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVEST 376 ++G +A ++ +P+ ++IG +SK I+F I++ ++++ S++ + Sbjct: 237 TTLNYLGICVANIITCLDPEAVIIGGGVSKGGKIIFDKINEVVKRRCFGTVSKNTRILPA 296 Query: 377 QFSNQGTMAGAA 388 + GAA Sbjct: 297 LLGTDAGVIGAA 308 >UniRef50_B9L0B4 Transcriptional repressor n=2 Tax=Thermomicrobia (class) RepID=B9L0B4_THERP Length = 325 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 131/259 (50%), Gaps = 11/259 (4%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +++RI+ +D+ + ++R + + PG ++ G+V P + +PL LE Sbjct: 42 VVERIVRLVDE--VAADAGVDRAIPVGVVAPGPLEPATGVVLFAPNLVGWQRVPLRRMLE 99 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + G V + +D + + EALFGA++G R ++ +++ VG GVI G L+ Sbjct: 100 ERLGRRVVLGNDGNGAALGEALFGAAKGCRHLVHLMLGTGVGGGVIAHGQLIEGVRGLGT 159 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH----GQPLTVDS 299 E+GH VDP G RC+CG GC+E ++ + N S L P+T Sbjct: 160 EVGHVPVDPTGPRCHCGGVGCVEAYIGGWALARDGEALRNSGRSERLRELAGDGPVTAAH 219 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + +AA GD A+ I+ + LA +VN+F+P+ I+IG +++A ++L D + Sbjct: 220 VVEAARAGDAGARAILEQAARALAVGLAGLVNVFDPEMIVIGGGVARAGELLL----DPL 275 Query: 360 RQQALPAYSQHISVESTQF 378 R+ LP Y+ H VE T+ Sbjct: 276 RRW-LPVYAIHYIVEHTEL 293 >UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID=D2PPF8_9ACTO Length = 414 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 114/409 (27%), Positives = 183/409 (44%), Gaps = 29/409 (7%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 H D ++ TN AV + P SR ++ L A++T IV E++ L +E E + Sbjct: 22 HTD-VRATNLAAVLGFLRANAPCSRAAIASGTGLNKATVTSIVGELIAQRLARETE-QTQ 79 Query: 69 GNRGRPAVGLVVETEAWHYLSLRIS-RGEIFLALRDLSSKLV--------VEESQELALK 119 + GRPA LV++ A+ + + + RG +A +L+ E S + Sbjct: 80 NHVGRPATLLVLDGSAYAAIGMEVGVRGLTAIAYDSAGGQLLRWHRSGPGPEASPAKTIA 139 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 L R IS + H + L + + PG+ID + +V + +++PL Sbjct: 140 ALAALARRAISAV------HSSGRDVL-GLTVGAPGLIDHDGSVV--LAAGLGWRDVPLR 190 Query: 180 EALEQHTG---VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLH 236 L G PV + +D + +AE +G G D+IQ+ + VGAGVI DG L Sbjct: 191 SDLIAALGRPAFPVMVDNDANLGALAEHRYGDHAGTADLIQLSGETGVGAGVICDGRPLR 250 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT 296 + EIGH ++ P G C CG GCLE +A + +IL RL + + Q L Sbjct: 251 GHHGYVGEIGHLRIQPDGPVCGCGRRGCLEAVAGMPAILA----RLEPADAPETDPQ-LR 305 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + L + A GD + VG +GR ++++V+L +P+ +++G + L P I Sbjct: 306 TEQLVRRAEEGDTATLKALAEVGGLLGRGISVLVDLLDPELVVLGGSYAGLGRWLVPAIE 365 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLLIRLL 404 + AL S V + F + T GA A D + +G L I L Sbjct: 366 QELADGALVTVSGRCRVVVSTFGHDATSIGAVARSLDRLDSGRLPIPTL 414 >UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3G4_9BACL Length = 304 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 129/268 (48%), Gaps = 10/268 (3%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 ++DR+ + I L I + PG ++T+ G + P P+ ++L+ Sbjct: 42 MVDRMAAAIQDILTAQGIAESELLGIGVGAPGPLNTKEGKIAEPPNLRGWWNFPIVDSLK 101 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 ++ +P+ +++D +A +AE GA++ A + + I +GAG+ + G L+ S + Sbjct: 102 RYFSLPIRLENDATAAALAEKWLGAAKDAEHFVFITISTGIGAGIYSHGKLITGASGNAG 161 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 ++GH VDP C CG GC E +AS ++ A L + +SS Sbjct: 162 DVGHIVVDPSVGTCVCGQKGCWEFVASGTAVARQASELLGREVSS---------KEAFDL 212 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A G + ++++ V ++G ++N F+P+K++IG +S+ D LF + D + + A Sbjct: 213 AAAGQPVIQELVAKVFENIGVGCVTLINTFDPEKLVIGGGVSQVGDPLFNAVRDYVSKYA 272 Query: 364 L-PAYSQHISVESTQFSNQGTMAGAALV 390 L P+ Q V + + G + AAL+ Sbjct: 273 LNPSGRQTPIVPAALHQDAGLIGAAALI 300 >UniRef50_D2PXD4 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PXD4_9ACTO Length = 324 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 124/247 (50%), Gaps = 3/247 (1%) Query: 146 LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEAL 205 + ++ I G +D G++ P E+PLG+ + G+P Y+++D +A + E Sbjct: 65 IGAVGIGCGGPLDPRTGVILGPPGLPGWDEVPLGQLVTDRLGLPAYVENDATAAALGEYR 124 Query: 206 FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCL 265 +G G R+++ + + G GV+ DG L + E+GH VD G+ C CG GC Sbjct: 125 WG-GWGVRNLVYLTVSTGFGGGVVIDGDLFRGAAGQGGELGHVVVDWQGRPCGCGARGCA 183 Query: 266 ETIASVDSILELAQ--LRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVG 323 E S +I A L+ S SS+ +T + + A GD+LA + A +G Sbjct: 184 EAYVSGTAIAARAHEALQGWGSESSLRSLDSVTAKDVVEHASSGDVLATAVWGETTAMLG 243 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 R++A+++N+ P+ +++G +++A +L + ++ QA+P ++ V + +Q Sbjct: 244 RMVAVIINVCEPELVVLGGGVTRAGGLLLDPVREAALSQAMPPAAKACDVVLSHHGDQAG 303 Query: 384 MAGAALV 390 + GAA + Sbjct: 304 VLGAAAI 310 >UniRef50_C6LD35 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LD35_9FIRM Length = 459 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 100/410 (24%), Positives = 179/410 (43%), Gaps = 32/410 (7%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 KQ N G + +LI +RI+LS+ L ++T IV E ++ LV E E + GR Sbjct: 54 KQFNRGLLLKLIATQNCRTRIELSKATGLTKMTVTNIVSEFIQQGLVAEREEVQTEVCGR 113 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHID 133 + L + +A + L I R I L LS + + ES + D +++ +H Sbjct: 114 NPILLEISGKAPKVIGLLIFRDRIEAVLCTLSMQKLASES----IHFDSLTKEQLYAHCF 169 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQ 193 R +K + + I + G +D G++ P + ++ +P+ EALE+ +PV+ Sbjct: 170 SVIDRLLEKEKNIFGIGVAAIGPVDIWKGVILNPPRFYGIQNVPVREALEKRYALPVFFD 229 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 HD ++ +AE LFG R +D + V I + +G+G+++ G + H+ EIGH +D Sbjct: 230 HDNNSAALAELLFGIGRNVQDFLFVGISNGIGSGIVSGGRVYHSHRGLPPEIGHISIDRR 289 Query: 254 GKRCYCGNHGCLETIASVDSILE-------------------------LAQLRLNQSMSS 288 G C CGN GCLE A+ +LE + S + Sbjct: 290 GPLCACGNRGCLELYANTHIVLEKLRAAKGRAFSGERCAGPGDALSANFCRAEEGASFAD 349 Query: 289 MLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAA 348 + + C+A + ++I + V L VN+ +P+ I++G Sbjct: 350 FCREEGASFADFCRAPQTAE--TEEIFEEMLQDVSAALVTSVNILHPEMIVLGHDCIDWD 407 Query: 349 DILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAAL-VKDAMYNG 397 + L + + + ++ + + + V+ F + + GAA D M+ G Sbjct: 408 ERLVGRLEELVNERKVVHDQRPLPVKKAYFGKEAQLIGAACNAVDQMFRG 457 >UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LTZ1_ACIC1 Length = 436 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 114/415 (27%), Positives = 189/415 (45%), Gaps = 41/415 (9%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 D I+Q N + R + G +SR DL+ L ++I +V E+ +LV E A Sbjct: 8 DVIRQRNLSVLLRRLHVDGALSRADLTAAMGLNRSTIKALVEELAAMNLVTETIPGTAQR 67 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL------ 124 GRP+ + V + + L+ + + +A L ++ + D PL Sbjct: 68 AGRPSHVVAVRCDTAYVLAANVGVDTVTVAAFGLGGHILA--------RRDYPLGGPGAS 119 Query: 125 LDRIISHIDQFFIRHQKKLER-----LTSIAITLPGIIDTENGIVHRMP--FYEDVK-EM 176 D +I+ + + LER L I + +PG++ E+G V P + +V Sbjct: 120 ADAVIARLAAECAAIRSALERSPDRRLVGIGVAIPGMVHAEDGRVEFAPNLMWRNVPFAA 179 Query: 177 PLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLH 236 PL AL+ VP+ I +D +AE + GA RG ++ + + +G G+I DG L+ Sbjct: 180 PLSAALD--VDVPIRIGNDGDLGALAEQVRGAGRGVAHLVYIAGEVGIGGGIIVDGRLVL 237 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT 296 EIGH V P G+ C CG GCLET ++IL A R ++ H Sbjct: 238 GRHGFAGEIGHVMVHPDGRPCRCGGRGCLETEVGEEAILT-ACGRDPRAGRQATH----- 291 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + +AA RGD A+D + + +GR L ++N+F+P+ ++IG PLS + PVI Sbjct: 292 --EVFEAARRGDRRAQDGLRHIAVWLGRGLGSIINVFDPEVVIIGGPLSSLLPLAEPVIR 349 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAA------LVKDA--MYNGSLLIRL 403 + + LP + + + + ++ GAA L++D M G+ +RL Sbjct: 350 EELAASTLP-HRRSVQIRPPGLGEDSSLFGAAELAFERLLEDPSMMGEGAARVRL 403 >UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q8E8_9ENTR Length = 377 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 168/346 (48%), Gaps = 12/346 (3%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVV 80 + RL+ +SR +++ +L+ A+I+ +++EML A LV+E I EA +GRP+V L + Sbjct: 9 IIRLLIASHGMSRTAIAQKMKLSKAAISTLIKEMLNAGLVEE-SIPEATGQGRPSVLLKM 67 Query: 81 ETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQ 140 ++ ++L + I L L D+ + + L L D L I I + Sbjct: 68 RADSAYFLGASLLGEAITLVLIDMHGRTLATRVLPLNL-DPHQLTRAIADAIPSLVTQQG 126 Query: 141 KKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWT 200 ++L + +TL G +D + + K++PL + L+ TG+ V +++D A Sbjct: 127 ISPDQLIGLGVTLSGFVDEHQAVCVQSALL-GWKDVPLADMLKAQTGLEVSLENDAKALA 185 Query: 201 MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCG 260 ++E +FG ++ R+ + +G+ G L EI H ++P G+ C CG Sbjct: 186 VSEKIFGLAKKVRNFTLISHSDGIGSAHFFQGQLHRGAHGGAGEIAHCTIEPGGRPCRCG 245 Query: 261 NHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGA 320 GCL+T+AS+ +I E +R ++++++ T+ L A++G A I+ G Sbjct: 246 KRGCLDTLASLTAIRE--HMR-DKAIAAQ------TLPELETQAIKGSSAAIAILHQAGN 296 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 +G +A +V + +P+ I+I +L V+ +I LP+ Sbjct: 297 ALGLAIANIVQMNDPELIVIAHHPGAFDGLLKTVVMQAIDANVLPS 342 >UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=B5XVY7_KLEP3 Length = 402 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 170/368 (46%), Gaps = 31/368 (8%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 G ++R +L+RL L P +++ IV EM + L+ + + A RG+PAV + + + + Sbjct: 27 GELTRAELARLTALTPQTVSNIVAEMEQMDLLTSHQPRRASGRGQPAVPVSLNPASAWSI 86 Query: 89 SLRISRGEIFLALRDLSSK------LVVEESQELALKDDLPLLDRIISHIDQFFIRHQKK 142 + + + + L DL+ + ++V++ Q A R+ +D+ Sbjct: 87 GIHLDHQTLIVVLVDLAGEVHFRRLILVQKPQPGAT------FARLAEVLDEIRALPTLD 140 Query: 143 LERLTSIAITLPGIIDTENGIVHRMPFYEDVKE-MPLGEALEQHTGVPVYIQHDISAWTM 201 R+ + + +PG E GI P + E + + L + +G+PV +++D + + Sbjct: 141 WSRVLGMGVVMPGPFGVE-GISSTGPTTLNGWEGVDVAAELGRLSGLPVTLENDATVAAI 199 Query: 202 AEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGN 261 E G +R + + I +GAG+ TDGH+ + + E+GH V P G+ CYCGN Sbjct: 200 GERFHGVARQLNSFVYLYIGTGLGAGIFTDGHVYTGHAHNAGEVGHIVVAPNGRPCYCGN 259 Query: 262 HGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAH 321 GCLE S+ + E L +++ L L+VD+ L IT + A Sbjct: 260 EGCLERYVSLQAAYEFCGLDPYRALPEDL----LSVDA---------ALFDQWITSILAP 306 Query: 322 VGRILAIMVNLFNPQKILIG----SPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ 377 + + + ++ +F+ + +++G +PL + P + S+R + LPA + + T Sbjct: 307 LRQAINLLECVFDAETVVVGGMMPAPLLEKVLARLPPLYQSVRGRYLPAQRVKMGMTGTD 366 Query: 378 FSNQGTMA 385 + G A Sbjct: 367 TAALGAAA 374 >UniRef50_C3QK14 ROK family transcriptional repressor n=13 Tax=Bacteroidales RepID=C3QK14_9BACE Length = 323 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/272 (26%), Positives = 142/272 (52%), Gaps = 9/272 (3%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIV----HRMPFYEDVKEMPLG 179 ++ ++++ I++ Q+K ++ I I PGI+D N IV + +E++ L Sbjct: 44 VIGQLVTAINEVKAFAQEKGYKIDGIGIGTPGIVDGTNRIVLGGAENINGWENIH---LA 100 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 + +E TG+P + +D + + E ++GA +GA V+ + + +G V+ DG L + + Sbjct: 101 DRIETETGLPALLGNDANLMGLGETMYGAGQGATHVVFLTVGTGIGGAVVIDGKLFNGYA 160 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 + E+GH + G+ C CG+ GCLE AS +++ R+ + S + + + + Sbjct: 161 NRGTELGHVPLIANGEPCACGSVGCLEHYASTSALVRRFSQRIIDAGISYPN-EEINGEL 219 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + + +GD +AK + +G +A +N+F+PQKI+IG LS+A D +S+ Sbjct: 220 IVRLYKQGDPIAKISLEEHCDFLGHGIAGFINIFSPQKIVIGGGLSEAGDFYIQKVSEKA 279 Query: 360 RQQALPAYSQHISVESTQFSNQ-GTMAGAALV 390 R A+P + + + + N+ G++ A+LV Sbjct: 280 RSYAIPDCAVNTQIIAAALGNKAGSIGAASLV 311 >UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK90_MOOTA Length = 315 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 81/253 (32%), Positives = 122/253 (48%), Gaps = 14/253 (5%) Query: 143 LERLTSIAITLPGIIDTENGIVHRMP--FYEDVKEMPLGEALEQHTGVPVYIQHDISAWT 200 L L I I +PG +D G+VH P F+ D L + L +PV I++D Sbjct: 60 LGELEGIGIGIPGSVDVARGLVHLAPNLFWRD---FSLRDELAALLDLPVAIENDAHVAA 116 Query: 201 MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCG 260 + E GA RG ++ V I +G+G+I DG + H E+GH ++ G++C+CG Sbjct: 117 LGEMWQGAGRGYTSLLMVTIGTGIGSGLIIDGRVHHGLFGYGAEMGHIKMVCDGRQCHCG 176 Query: 261 NHGCLETIASVDSILELAQLRLNQSMSSMLHGQP-LTVDSLCQAALRGDLLAKDIITGVG 319 HGCLET+AS ++++ + L SML +P L + AA GD LA +I Sbjct: 177 GHGCLETLASATAMVKSFREYLAAGYPSMLSDRPELGAKEILAAAAGGDELAGRVIDEAA 236 Query: 320 AHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS----QHISVES 375 ++G LA V L P+ I+IG ++A + VI D IR+ A + + V Sbjct: 237 CYLGTALANAVLLVGPEAIIIGGGPAQAGE----VILDPIRKHLAAAMGTWQLKQVPVLQ 292 Query: 376 TQFSNQGTMAGAA 388 N + GAA Sbjct: 293 AALGNDAGIIGAA 305 >UniRef50_Q185Y3 Putative regulator of a specific sugar metabolism n=6 Tax=Clostridium difficile RepID=Q185Y3_CLOD6 Length = 404 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/408 (22%), Positives = 192/408 (47%), Gaps = 16/408 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M++ Q +I +K N + +L+ P+SR+DL++ L +++ +V E++ +++ Sbjct: 1 MMSNKQGSNIKDVKIKNKLIILKLLSTNTPMSRVDLAKSTGLTKMTLSNLVTELINENMI 60 Query: 61 QELEIK--EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLV--VEESQEL 116 +E+E A + GR + L + + + I R + + DL +V + E+ Sbjct: 61 REIESSTLNAHSSGRKPILLDISNISPCICGILIRRNICKVIISDLKGNIVKQLSETYPK 120 Query: 117 ALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEM 176 L +D+ L II + ++ K+ I+ P +D NG + P + +V + Sbjct: 121 CLSNDV--LKDIIKRMFTKIMKINKRDIIGIGISSIGP--VDDINGTILNPPDFGNVSNL 176 Query: 177 PLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLH 236 + + +++ + +P+++ +D ++ +AE ++G + + I + I + +GAG++ + L Sbjct: 177 NIVDFIKEMSDLPIFLINDANSGALAEKMYGLGKNISNYIYLHIMNGIGAGLVLENKLHT 236 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILE----LAQLRLNQSMSSMLHG 292 EIGHT ++ G C CGN+GCL+ SV ++++ L+ + N S +++ Sbjct: 237 GNLGQSGEIGHTSINFSGPLCSCGNNGCLDYYTSVSNLIKRIESLSHIYPN---SPLINC 293 Query: 293 QPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 + ++ L A D LA ++ +V L + L + I+IG + + Sbjct: 294 KDFSLVKLIDEANNKDSLAMFLLDEFCTYVSYALVNTLTLIDCSSIIIGYDFNIPGTFIE 353 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSL 399 + + A + + ISV + F + G+ A+V +NGS+ Sbjct: 354 NTLLKKLTASASFSKYKKISVRHSNFGANAPLIGSIAIVSYNFFNGSI 401 >UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C6Y2I2_PEDHD Length = 405 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 97/397 (24%), Positives = 188/397 (47%), Gaps = 38/397 (9%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEA---------HLVQELEIKEA 68 +G Y+ I V +I +S LA+ A+I + REM + L+ E +K+ Sbjct: 13 SGMAYKNIS----VKKIIISYLAEKGHATIADLCREMNLSIPKVTTSVTMLITEGVVKDF 68 Query: 69 GNRG-----RPAV-GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL---- 118 G G RP + GLV ++ +L + + I + L DL K++++ ++ + Sbjct: 69 GKVGSTGGRRPNIYGLV--PDSGFFLGVDVKHQHINIGLIDLQ-KVIIKITKYIPYQLIN 125 Query: 119 -KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRM-PFYEDVKEM 176 KD L L R+I +F ++ + I L G I+ E G + FYED Sbjct: 126 NKDALYELCRLIK---EFIYNTSIPKYKILGLGINLSGRINHETGYSYNFFNFYED---- 178 Query: 177 PLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLH 236 PL LE+ G+ +++D A E G + DV+ + +D+ +G G++ + L + Sbjct: 179 PLSTILEKELGIKTMVENDSRAMAYGEFSAGVVKEEEDVLFLNLDYGIGMGIMLNKKLYY 238 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL- 295 S E+GH + C CG GCLET AS ++ + + R+ ++ + L Sbjct: 239 GKSGFAGELGHVPLLNNEIICQCGKKGCLETEASGQGLIRMFKTRVEAGSTTTIDKNKLG 298 Query: 296 --TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFP 353 V + +AA D+L+ +++ +G +GR +A+++N+FNP+ I++G L++ + + Sbjct: 299 QLQVQDIIRAANNDDVLSIELLAKMGEILGRGIAMLINIFNPELIVLGGLLAETGEYIQL 358 Query: 354 VISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 I ++ + +L + ++ ++ + + G+ L+ Sbjct: 359 PIKSAVNKYSLSLMNNDTKLKLSKLGEEAGVIGSCLL 395 >UniRef50_D1BDW5 Transcriptional regulator/sugar kinase n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BDW5_SANKS Length = 400 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/338 (24%), Positives = 162/338 (47%), Gaps = 17/338 (5%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL----EIKEAGNRGRPAVGLVVETEA 84 GP+SR LS+ L+P S+T++ + +L+A L+ E E +A GRPA L V+ + Sbjct: 36 GPLSRSALSQRLGLSPGSLTRLTKPLLDAGLLVEAQAPAEADDAPRLGRPAQPLDVDPSS 95 Query: 85 WHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFF--IRHQKK 142 H++ ++++ + AL DL + ++ L D ++D + +D + + Sbjct: 96 HHFVGVKLTGDHAYAALTDLRAGVLAAADAPLDATDPERVVDVVAQLVDDLVATLATVRP 155 Query: 143 LERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMA 202 +T + ++L G ++ + + + +++PL L + T + +++DI A T A Sbjct: 156 SASVTGLGVSLGGHVERRTDVT--LADHLGWRDLPLAALLAERTSLRTVVENDIVAVTEA 213 Query: 203 EALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNH 262 FG G V I +G G++ + + + L + H +DP G CG+ Sbjct: 214 THWFGEGHGCSRFALVTIGAGIGYGLVVHDAAVESPEAGLSLLSHFSLDPDGPVGPCGHA 273 Query: 263 GCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHV 322 GC + + +++E A S L G+ +T D L A GD +A+D++ G + Sbjct: 274 GCATAMLTTGALVERA---------SALLGREVTYDQLLDLAAAGDPVARDLVDASGRAL 324 Query: 323 GRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 GR+LA + NL P+++++G + A++ + +R Sbjct: 325 GRLLAAVANLTMPERVVLGGEGVRLAEVAADALQTGLR 362 >UniRef50_D2B9Z8 Transcriptional regulator, ROK family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B9Z8_STRRD Length = 407 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 88/360 (24%), Positives = 161/360 (44%), Gaps = 24/360 (6%) Query: 27 QLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWH 86 + GP SR +L L+ +++ IV +++ V + + A RGRP + + A Sbjct: 24 ERGPCSRRELENATGLSRTTMSAIVADLVRRRAVADDAQRPAPGRGRPTTLVRLNPHAAA 83 Query: 87 YLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-LDRIISHIDQFFIRHQKKLER 145 + + + RG + +A+ D++ ++ ++ + ++ L + +D +S + + + LE Sbjct: 84 AVGVELGRGHVSVAVADIARTVLAHVTEPIGMESGLSVRMDAALSLLKRVAAGRRLALEG 143 Query: 146 LTSIAITLPGIIDTENGIVHRMPFYE------DVKEMPLGEALEQHTGVPVYIQHDISAW 199 L + + L G H P D+ L E L VPV ++I Sbjct: 144 LAAAGLGLWGH--------HPDPRAGGGDPAGDLVVTDLAERLGGTLDVPVTWDNNIRLA 195 Query: 200 TMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYC 259 +AE S D++ + + H VG+GV+ +G L S + EIGH V+P G C+C Sbjct: 196 AVAERYTVESPACADLVYIALSHGVGSGVVINGTLARGASGTAGEIGHVSVEPSGPPCWC 255 Query: 260 GNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVG 319 G GCLE S+D++L R+ + V L A RGD +D++ Sbjct: 256 GGRGCLEQYLSIDAVLG----RVRAVAPDVAD-----VAGLVAALDRGDRSVRDVVDWSA 306 Query: 320 AHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFS 379 +GR L + L +P +++IG L+ D L + S+ +Q L + + + + + S Sbjct: 307 ELLGRALGTVAILLDPHRVVIGGELADLGDHLLDPVRASLARQKLSIRDRRLELGTARIS 366 >UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CY52_MYXXD Length = 408 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 84/381 (22%), Positives = 180/381 (47%), Gaps = 15/381 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 ++ N+ + +I + +SR +++R +L+P++++ IV ++ + LV+ + + Sbjct: 15 MRAQNSSLLLNMIWRERQISRAEIARRTELSPSTVSAIVADLERSGLVRSIGAGVSRGGR 74 Query: 73 RPA-VGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIIS 130 RP +G +A+ + + + + AL DL ++ A+++D L ++ Sbjct: 75 RPTLIGFC--DDAFSLIGVEMGATHVTAALTDLRGRVRAYRHASHAVREDPKGTLQKVRE 132 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGII-DTENGIVHRM--PFYEDVKEMPLGEALEQHTG 187 + + + + + I +P + + G + + P + D + E+L G Sbjct: 133 LVQEVLDAERVPRRSVAGMGIAVPSPVHPSAPGKLSPLLVPAWRDYD---VQESLRSAFG 189 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +PV++ +D + ++E +GA D+ + + +G+G I G + + EI H Sbjct: 190 LPVFVDNDANLGALSECYWGAGVNGEDLAYIKLATGIGSGHIIHGDVYRGAGGTAGEISH 249 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 VD G +C CG GCL T+ ++LE A+ + + + LTV L + A G Sbjct: 250 MAVDSSGPQCVCGLRGCLVTLIGSAALLERARELMGRK-----DKRALTVRELVEGARAG 304 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + A+ +I G+G ++G +A ++NL NP +++G +S D+L + S+R++AL Sbjct: 305 EPAARQVIDGLGHYLGIAVAGLLNLLNPAIVVLGGEISSVGDLLLDPLRASVRKRALSTS 364 Query: 368 SQHISVESTQFSNQGTMAGAA 388 + ++ ++ GAA Sbjct: 365 MAETRIVTSALGDRAIAVGAA 385 >UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CF6 Length = 402 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/337 (27%), Positives = 158/337 (46%), Gaps = 16/337 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG--- 69 ++ N +V + + GP+SR D++ A ++ A+ +V ++LE E + EAG Sbjct: 11 VRLGNRASVLYTLRREGPISRQDIAVRAGVSAATANNVVGQLLE-----EGVLGEAGQMP 65 Query: 70 -NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLS--SKLVVEESQELALKDDLPLLD 126 N GRPA + + + + + L L DL+ L+V+ + + + Sbjct: 66 SNGGRPASLTGINPGYGAVVGVDLGETAVRLELFDLALQRTLLVDTPVRAGEQGAEAIAE 125 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGII-DTENGIVHRMPFYEDVKEMPLGEALEQH 185 I + +++ ERL + + +PGI+ D+ +VH + PL LEQ Sbjct: 126 LIAAGVERLLSESGVARERLLGLGVGVPGIVEDSGTSLVHAPSM--GWEGAPLAALLEQR 183 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 TG+P + + A AEA FGA+ +DV+ +I VGA ++ G L S+S E Sbjct: 184 TGLPATVSNGAKALGTAEAWFGAAGEGQDVVVCLIGTGVGASLLQQGTLYRGASASAGEW 243 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GHT + G C CG HGCLE +I+ ++ + + G+ ++ L AA Sbjct: 244 GHTTIVLDGDTCRCGAHGCLEAYVGAPAIVRRWAAVSGEATAGL--GEEEVIEQLAVAAE 301 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGS 342 G A +++ ++G ++ +VNL NP +I+IG Sbjct: 302 AGGEQALEVLRETARYLGAGVSDLVNLVNPDRIVIGG 338 >UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyces RepID=B5I1X5_9ACTO Length = 408 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 165/379 (43%), Gaps = 21/379 (5%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +++ N V + GP+SR ++ L A+++ +V E++ + L++EL + G G Sbjct: 30 MRRRNLARVMHTVSAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEELGPERPGRVG 89 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA--LKDDLPLLDRIIS 130 RP L V + + + + DL ++ + A + P++ + S Sbjct: 90 RPGSALAVSGRGPAGIGAEVGVDHLAVCAVDLRGQVRSRAVRYGANRGRSPEPVIAELAS 149 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + Q + + +A+ +PG++ + V R P D + LG L Q +P+ Sbjct: 150 LVSQVVAEGEGEGLWPAGLAVAVPGLVARDVRTVVRAPNL-DWHDTDLGALLPQD--LPL 206 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 + ++ + +AE G D + V + +GA ++ DG LL E+GH V Sbjct: 207 TVGNEANFGALAELWLGDGT-PHDFLHVSAEIGIGAALVVDGQLLRGTRGFAGELGHVPV 265 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 P G RC CG GCLE A +++L A L + + L Q A GD Sbjct: 266 HPDGPRCPCGGRGCLEQYAGEEAVLRAAGLEPGEDRVGL----------LAQHAADGDEA 315 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI-RQQALPAYSQ 369 + + G +G L VNL +P+ +++G L+ A L P + D + R+ A PA Sbjct: 316 VRGALREAGQALGIALTGAVNLLDPEAVVLGGALAGLAPWLLPSLRDELARRTAGPACPV 375 Query: 370 HISVESTQFSNQGTMAGAA 388 +S +QG + GAA Sbjct: 376 SVS----GLGSQGPLLGAA 390 >UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG67_9FIRM Length = 398 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 96/404 (23%), Positives = 184/404 (45%), Gaps = 13/404 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + G+ +K N V +++ GP+SR +++ A L+ + T I+ ++ A L+ Sbjct: 1 MAGTARGGNAQDMKTRNRLLVLQMLCTYGPLSRGEIAARAGLSKMTATNIISDLETAGLI 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLS-LRISRGEIFLALRDLSSKLVVEESQELALK 119 E + + AG RP GL+ + A + + I R L DLS+++V ES Sbjct: 61 AEEKGESAGAGRRP--GLIRLSPASPLVCGITIGRRRCEAVLADLSAQIVARESACYDNA 118 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLER-LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 D P L +++ + R K+++R + I + G +D G + P + + +P+ Sbjct: 119 LDGPRLSELLARLCS---RLLKRVDRPVAGIGVAALGPLDARAGTLLNPPNFYGIGHLPV 175 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 L +G+P + HD+SA +AE L+GA + + I +GAG++ DG L Sbjct: 176 RAILSDASGLPCVLLHDVSAAALAEQLYGAGQAFESFFYLQIRDGIGAGMVLDGALFDGV 235 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + E+GH ++ G +C CG GCLE AS ++L A+ ++ ++ P Sbjct: 236 AGLSGELGHVSINFEGPQCACGGRGCLECYASERALLAYAREYAARTGTA----APENWS 291 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 AA GD + +V L+ + L + ++ + +L ++ Sbjct: 292 DAISAAGTGDAACAAALERYCGYVAAALSNALCLIDVHRVFV-GYDGDGGGLLERLLEQR 350 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAG-AALVKDAMYNGSLLI 401 + ++ A + I+V + F + ++ G AAL +++G+ + Sbjct: 351 VNERLHIAGCRRITVRRSSFGSDASVYGAAALAARCVFDGAFAL 394 >UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C348_BEUC1 Length = 410 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/382 (23%), Positives = 172/382 (45%), Gaps = 16/382 (4%) Query: 12 QIKQ-TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 Q+KQ T A V+ I GP+SR +L L L +++ ++ ++ LV E ++ +G+ Sbjct: 3 QLKQGTTAARVFGEIWHHGPLSRSELVALTGLTKSTVFQLTEDLQRDGLVVETGLRTSGS 62 Query: 71 RG-RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRII 129 +G R A L +A + + + +A+ D +++ S+ + + R+ Sbjct: 63 QGGRRATLLQANPDAVRVVGVHLGGTRTSVAITDTFGRVLDARSRPTVRRRPDESVARVA 122 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 I + H +++ + +PG+ID + G+ P +++P+ + + P Sbjct: 123 EMIGELSAEHGAP----SAVGVAVPGLIDRDTGLCLVAPNL-GWRDVPVATLIGEAVQAP 177 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 + + A +AE + + + VG +ITDG+LL E+GH Q Sbjct: 178 TIALNTVQAMAVAEMAQLRPDERMTLAMLYVGTGVGTALITDGNLLRGARGLAGELGHLQ 237 Query: 250 V----DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 V DP +C CG GCLE++ D+I+ A R G+ LT + + + A Sbjct: 238 VRDPGDPEAVKCACGRVGCLESLVGADAIVRRATQR-----GIAAAGRRLTPELVGELAS 292 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 GD A+ +I + +G A +V L NP +++ ++ D+L + +++ ++ P Sbjct: 293 DGDAAARSLIQDIAVEMGEAAAALVQLTNPDTVVVAGSVASMGDMLLDPLRETVVRRTQP 352 Query: 366 AYSQHISVESTQFSNQGTMAGA 387 + + V + NQG + GA Sbjct: 353 ELRESLDVRRSLLDNQGKLRGA 374 >UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KQ9_SYMTH Length = 391 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 94/336 (27%), Positives = 162/336 (48%), Gaps = 10/336 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 +P + +KQ N AV I GP+SR++L+ L L+ ++T IVR++L+ LV+E + Sbjct: 3 RPANARLMKQLNRQAVLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEKGL 62 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 ++ GRP + L+ A L++ + ++ L DLS L VE L+ P Sbjct: 63 GQSSG-GRPPIMLLFNPAARFVLAVCLEGERLWGGLADLSGALQVEAEGVLSPDPHDPA- 120 Query: 126 DRIISHIDQFFI-RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 R + Q I R + RL ++A+ +PGI TE G V P +E+PL + L Q Sbjct: 121 -RSVCDFLQGLIDRSGVEASRLAAVAVGVPGIAHTE-GTVSHAPSLGWWQEVPLRDRLRQ 178 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 GVPV +++D++ + E GA G ++ + + +GAG++ DG+L ++ E Sbjct: 179 CFGVPVVVENDVNLMALGEYFQGAGVGVANLALMHVSEGIGAGILIDGNLFRGARNAAGE 238 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 +G+ + P R + G E S +I + Q L ++ G+P V L + A Sbjct: 239 VGYLPLGPLSPR-RPQDFGLFELHYSSRAIRQQLQAALPEAPGD--DGRP--VRRLRELA 293 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILI 340 G A+ + H +A + + NP+ +L+ Sbjct: 294 EAGLPWARSLFGDALRHWAHAVASITCILNPELVLL 329 >UniRef50_C7Q3N2 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q3N2_CATAD Length = 401 Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 106/366 (28%), Positives = 174/366 (47%), Gaps = 22/366 (6%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G I QT ++ I GP+SR +L+R A L+ +++TK+V ++EA V E+ K Sbjct: 22 GSIADATQTQ---LFAEILTAGPLSRTELARRADLSQSTVTKVVNPLIEAGYVVEVGAKS 78 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLD 126 +G GRP L V + + + ++I+ G + L DL ++++ ++ L A D LD Sbjct: 79 SG-MGRPHRLLRVAADRYAVIGVKIAPGSVTGVLADLEARVLAHRTRPLTAGHDPAEALD 137 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENG-IVHRMPFYEDVKEMPLGEALEQH 185 ++ + + + + + + L G +DT +G + H D + + E L Sbjct: 138 AAVAVVREL-VDDPTAHGEVLGLGVGLGGHVDTASGRVAHSGVLGWD--NVQVAEPLAAA 194 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 TG+P + +D++A +AE FGA R + V VG G++ G L + E+ Sbjct: 195 TGLPTVVDNDVNALAIAERWFGAGRDIDSFVLVTTGPGVGCGLLLGGQLYAGSTGLAGEL 254 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSIL-ELAQLRLNQSMSSMLHGQPLT-VDSLCQA 303 GH + G C CGN GCLET+AS ++L E+A HG +T + A Sbjct: 255 GHIPLQANGVVCDCGNRGCLETVASDRAVLREIAA-----------HGGSITDIGEAITA 303 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD A +G +G LA + NLFNPQ+I++ + A D+ S R+ A Sbjct: 304 ARSGDERALAAFETMGTALGLGLATVCNLFNPQRIVLTGERASAYDLFGSACEKSWREHA 363 Query: 364 LPAYSQ 369 +Q Sbjct: 364 FSTAAQ 369 >UniRef50_Q6MCP0 Putative glucokinase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MCP0_PARUW Length = 327 Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 133/269 (49%), Gaps = 10/269 (3%) Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 ++++ K+E + I I + G ID E G+V P ++ L + LE+ +PV + +D+ Sbjct: 57 LKNRTKVE-IKGIGIGVAGQIDEETGVVRFAPNLPGWHQVTLRKNLEREAEIPVKVVNDV 115 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 A T E L+GA + +D+I + + +G+G++ G + +++ E+GH +D +G R Sbjct: 116 RAITWGEWLYGAGKHYQDLICLFVGTGIGSGIVCQGKMQKGDNNTFGEVGHMTIDFHGPR 175 Query: 257 CYCGNHGCLETIASVDSILELAQ---LRLNQSMSSMLHG-----QPLTVDSLCQAALRGD 308 C CGN+GC E A I A+ L NQS S+L + ++ ++ +A GD Sbjct: 176 CTCGNNGCFEAFAGGWGIARQAKELILADNQSGQSILEKAGGYLENVSAKAVIEAYHSGD 235 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 LA I+ V + +VN FNP +++G + + I IR+ AL + Sbjct: 236 PLALLILEKVKQALIAGCINLVNAFNPACLILGGGVLDGIPEILSFIDKGIRETALKTAT 295 Query: 369 QHISVESTQFS-NQGTMAGAALVKDAMYN 396 + +++ N G + A++ D + N Sbjct: 296 DKLQIKTALLGKNVGIIGSGAVILDVLKN 324 >UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_RENSM Length = 446 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 179/388 (46%), Gaps = 16/388 (4%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 PG ++Q+N + + GP+++ +LSR L+ A+++ +V+ M + LV Sbjct: 56 NPGSQSALRQSNQQRIVETLLNAGPLTQAELSRHTGLSTATVSNLVKIMSDGGLVSTAPT 115 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 +G R A + + + + + + R + +A+ L +++ E S +L L Sbjct: 116 TSSGRR---ATSVRLNSNGAVAVGIDVGRTHVRVAIASLGYRVIAERSIKLPLGHLAVEG 172 Query: 126 DRIISHIDQFFIRHQKKL--ERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + + + Q + H L + + +PG ID+ G V + + + + E LE Sbjct: 173 VKAAADLLQGLL-HDAGLPASAVVGAGVGIPGPIDSRTGTVIQGAILPEWVGINILEMLE 231 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 VPVY+ + + +A+ +G D++ V I +GAG+I G + Sbjct: 232 DALKVPVYVDNYANLGALAQVTWGVHSAVEDLVFVKIGSGIGAGLILGGSPYYGNIGVTG 291 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 EIGH + G C CGN GCLET+AS ++EL L++ + P+T + + + Sbjct: 292 EIGHATISEQGLICRCGNRGCLETVASTAIMIEL----LSRGAPA-----PITTEDIIRL 342 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A D +I G VGR +A + NL NP+ I++G L++ ++L I + + A Sbjct: 343 AREKDSATLRVIDDAGQAVGRAIANVANLLNPEVIVVGGSLAELGEVLLEPIRRGLIRHA 402 Query: 364 LPAYSQHISVESTQFSNQG-TMAGAALV 390 +P + + + N+ + GAALV Sbjct: 403 VPVVGETTHLVMSSMGNRAEALGGAALV 430 >UniRef50_A6NRU6 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRU6_9BACE Length = 376 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 98/392 (25%), Positives = 186/392 (47%), Gaps = 26/392 (6%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + P + D K N V RL+ +SR DL+ + L AS++ IV E+ +V+EL Sbjct: 2 KRTPRNADYTKNYNRNLVLRLLRHR-QMSRADLAAASGLTRASVSLIVEELQRQGVVEEL 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E A RGR + L + + + + ++R + + DL+ L+ + S D Sbjct: 61 E-PTATKRGRTPLPLAIRGGVYCAVGVYLNRSGCQMGVVDLNGTLLEKRSLSPGACSDTA 119 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 L +S + ++ Q ++ I ++ PG +D+ G + P + P+ + L Sbjct: 120 AL---VSAAAELLVQAQPDGSKMLGIGVSAPGPLDSGGGRILNPPGFARWHGAPVCQMLT 176 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + TG PV+++++ A T+A+ + ++G RD + +++D VG+GVI+ G LL +G Sbjct: 177 EKTGQPVWLENN--ACTLAQ-YYCEAKGLRDALLLLVDSGVGSGVISGGRLLQSGGGFTS 233 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILE-LAQLRLNQSMSSMLHGQPLTVDSLCQ 302 E+GHT +D G+ C CG GCLE A+V ++L A Q + + G P + L Q Sbjct: 234 ELGHTTIDFNGRLCSCGGRGCLEAYAAVPNLLRGTAYTSWRQLVENAAQGVPDAAELLEQ 293 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A A++ + +VNL + +++ +S + P++ ++ + Sbjct: 294 EA---------------AYLSAGITNLVNLVDVDTVILAGDISWGFETFRPLLEKRLQGR 338 Query: 363 ALPAYSQHISVE--STQFSNQGTMAGAALVKD 392 + + +++E S + Q A AA+ ++ Sbjct: 339 LIGRTDRAVALETMSAETDTQICAAAAAVFRN 370 >UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QHP4_CATAD Length = 395 Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 95/383 (24%), Positives = 171/383 (44%), Gaps = 36/383 (9%) Query: 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG------- 72 AV RL+ + G +SR D++R L+ ++++ I+ ++ LV EL+ K A G Sbjct: 16 AVVRLLRERGTMSRADIARSVGLSRSTVSGIIAALVADDLVVELDAKLAPAGGGAGRPGA 75 Query: 73 ----RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSS-KLVV--EESQELALKDDLPLL 125 PA G + + + Y + + + A+R S +L V + +Q + DL Sbjct: 76 AVMLNPASGEAIGVD-FGYRHVHVIIANVAHAVRIAKSVRLPVGYDPAQGFDVASDL--- 131 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHR-MPFYEDVKEMPLGEALEQ 184 I + ID+ R+ + +++PG DT+ G+ MP +P+ L Sbjct: 132 --IRTAIDE----AGTDPSRILGVGVSVPGPFDTKRGVPSSGMP--SRWAGIPVATELAA 183 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +PV D +AE +GA+RG + + + + +G +++G L + E Sbjct: 184 RLNLPVLADGDTRLGALAERRWGAARGCDEFVYLKLHGGIGGAFVSNGQLARGINGGAGE 243 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGH VD G C CGN GCLET + ++ + +G LT+ ++ A Sbjct: 244 IGHLVVDATGPLCRCGNRGCLETFVGLPVVMRALE---------PAYGDRLTLRNVITMA 294 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 +GD ++ G GR + ++ N+ NPQ ++IG LS A ++L + ++ +L Sbjct: 295 WQGDRGCIRALSDAGTMAGRAVGMLGNILNPQSVIIGGALSAAGELLMGPLREAAATASL 354 Query: 365 PAYSQHISVESTQFSNQGTMAGA 387 P ++++ Q GA Sbjct: 355 PLAGDAMTLQVGSLGPQACALGA 377 >UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WP29_ACTMD Length = 410 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 93/384 (24%), Positives = 171/384 (44%), Gaps = 26/384 (6%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA-GNR 71 ++ N V R + L P +++ L+R L+ A+++ +V + + +V E+ E G R Sbjct: 23 VRALNTRRVLRAVMVL-PATQVQLARRTGLSQATVSGVVGRLQQEGVV---EVDEGEGER 78 Query: 72 GR-----PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEE--SQELALKDDLPL 124 G+ P G V E H + +ALR + ++ V+ + ++ + +DD Sbjct: 79 GKRVRVAPMRGAAVGIEVGHD--------RLIVALRRIDNEEVLHQGGNRLVVGRDDRAW 130 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHR--MPFYEDVKEMPLGEAL 182 + + ID + SI + LP +D G V++ ED++ P Sbjct: 131 VGEAVRLIDDLLESTGMVAADVVSIGLGLPAAVDPRRGRVNQSVTAMKEDLRGNPATWFE 190 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E + GVPV + ++ + E +G R A ++ V +GAG++ G + Sbjct: 191 EHYPGVPVVVDNEANFAAYGEYTYGVGRDAEVLLFVKASTGIGAGLVIGGTVFRGRHGFA 250 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 E+GH +DP G C CGN GCLET+ S ++E + Q+ P+T+ L + Sbjct: 251 GEVGHLTMDPNGLVCRCGNRGCLETLVSGPRLVE----EVRQAYRGHRVDLPMTLAGLIE 306 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A D + ++ G ++G LA + N+ NP +++G L +A D++ + + + Sbjct: 307 RARAHDPVCVRVLQDAGRNIGLALARVCNIVNPDLVVLGGELGEAGDLVRKHAARDLERN 366 Query: 363 ALPAYSQHISVESTQFSNQGTMAG 386 L +H + S G +AG Sbjct: 367 VLTGMLEHEHPVVVRVSELGLLAG 390 >UniRef50_B5YHD0 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHD0_THEYD Length = 317 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 138/274 (50%), Gaps = 20/274 (7%) Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVH--RMPFYEDVKEMPLGEAL 182 +++II ID ++ I + + G++D E ++ +PF + + PL + L Sbjct: 37 MEKIIEEIDSICNEF-----KIKGIGVGIAGLVDKEGNVIKAANIPF---LNKFPLKKEL 88 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E + V I++D + T+AEALFG +G+ I + + +G G DG + + Sbjct: 89 ENRYNMNVKIENDATVATVAEALFGQGKGSFSFILLTLGTGIGGGFWFDGEI----AQFP 144 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASV----DSILELAQLRLNQSMSSMLHGQPL--T 296 +E+GH ++ GK C CGN GCLE AS D+++E + + + G T Sbjct: 145 LEVGHMSINYQGKFCNCGNTGCLEVYASARAIKDNLIERVENGEESYIKKLYEGNIYRAT 204 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + + +AA+ GD L + ++ G +G +A ++N+F P+KI++ LSKA +I Sbjct: 205 SEDIYKAAMEGDHLCRSVLKEAGKALGAGIANLINIFGPEKIILTGGLSKAINIYLETAI 264 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 +++A+ ++ +S+ + ++G + GA + Sbjct: 265 QEAKKRAMIGIAESVSITQSSLVDKGGVLGAVAI 298 >UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1T2_ERYRH Length = 392 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 12/305 (3%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL-EIKEA 68 + + K + L+ GP+SRID+S+ + PA+++ + + ++ ++ E+ E + Sbjct: 3 LSKAKTKQTALILDLLYSKGPLSRIDISKSLHITPATVSDLTQHLINDKIICEIGEDTDN 62 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 GR + L + +YL + + LAL D +++ EE+ L+ K D D + Sbjct: 63 TRVGRRKILLGLLPNHSYYLGVELFEHSFTLALSDNLNEICFEEAFTLS-KSDHVRHDLL 121 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 + I+ F +H +TSI I +PG D + H + L + L++H Sbjct: 122 VKTINDFLKKHSDT--AVTSIGIAIPGHYDKTSA--HILTNNHSWANFSL-DYLKKHLKY 176 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PVY +++++A + E LFG + + + + + + G L + + EIGH Sbjct: 177 PVYFENNVNAMAIRERLFGHDKTDANFLFLHFRRGIFCSYVYQGDLYARNNYFVGEIGHL 236 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQA 303 V+P+G++C CG GCL+T AS +L A L N S ++ L L++D L QA Sbjct: 237 VVNPFGEQCECGKIGCLQTYASQTWLLHKASLLFNSSANTYLKQLVNEEHELSMDILLQA 296 Query: 304 ALRGD 308 GD Sbjct: 297 YHLGD 301 >UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AFQ9_9ACTN Length = 405 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 95/393 (24%), Positives = 182/393 (46%), Gaps = 21/393 (5%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + P + ++Q N R + G SR ++R + L+ AS+T ++ E++ LV E Sbjct: 10 SAPATVSDVRQRNRSQALRSVILTGETSRAAIARESGLSVASVTNLISELISEGLVMEAG 69 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 A + GRP L ++L + + + L DLS + E + ++ P+ Sbjct: 70 -SVASSGGRPVTLLAPNPSGAYFLGADVGERGVAVELFDLSMTRIDREFR--GGREGEPI 126 Query: 125 LDRIISHIDQFFI----RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + I + +D+ R+ +R+ I + LPGI+++ + ++ + + + P+ Sbjct: 127 -EAIAADLDEALNALRERNPAAWDRMIGIGLGLPGIVES-DAEGRQVLYAQSLGWSPIPV 184 Query: 181 A-LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 A L H +PV+ ++ MAE GA+RG + + V++ VG ++++G L + Sbjct: 185 ADLVSHD-IPVFAENGAKTQAMAELWDGAARGVNEALVVLLGRGVGLAIVSNGELARGLN 243 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL-TVD 298 SS E GH ++ G+ C CG GC+E D+ILEL + + G V Sbjct: 244 SSAGEWGHVKIVRNGRLCRCGGRGCVEAYLGADAILELW-----REAGGVFDGSGWGAVG 298 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLS-KAADILFPVISD 357 L ++ D +A ++ + +G L +VNL NP++++IG + + + L + + Sbjct: 299 QLLESH---DPVAVGVVDELIETLGSALGGLVNLTNPERVIIGGWVGLRLMEALASRMEE 355 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 + R +AL S+ + F GAA++ Sbjct: 356 ATRAEALARPGGQFSLHACSFGGDTVALGAAIM 388 >UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7J1_9RHOB Length = 402 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 165/353 (46%), Gaps = 20/353 (5%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK---E 67 +Q+++ N V + + ++R+DL RL L+ A++T I ++ + L+ E+E + + Sbjct: 8 EQVRRQNRFVVLSTLRRHTTLARVDLGRLTGLSLAAVTSITADLKDRGLIAEVEEQPNPD 67 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLS------SKLVVEESQELALKDD 121 A RGRP L + + H +++++S + LAL D + +K +VE S ++ Sbjct: 68 ANTRGRPRTYLRLRDDVAHVITVKLSVDRVSLALVDYTGHQHAEAKFMVE-SSDMGGDAF 126 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + LL R I + + I + GI+ NG + P + +++ L Sbjct: 127 IALLAR---EIKALLKTEPLRARSVMEITVATQGIVGKHNGSIIWSPTIAE-RQVELTAK 182 Query: 182 LEQHTGVPVYIQHDISAWTMAEALF--GASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L + G+ + +D + +AEAL A + + + + V ID VG G+ L + Sbjct: 183 LSKTLGITCTLYNDTN--MIAEALHRQDAEKYSGNFVVVYIDRGVGMGIFIKNALYRGET 240 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLET-IASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + E GH+ P G C CG GCLE IA E +L S S+M +G P + Sbjct: 241 GAAAEYGHSPFTPDGAACRCGKKGCLEAYIADYALYREAQKLPKETSPSAMFYG-PEYIQ 299 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADIL 351 +L A GD A+ + T G +G LA ++L +P +I++ +A D+ Sbjct: 300 NLRARARVGDAQAQKVFTDAGFALGVSLARTISLLDPSRIVLTGKAMQAYDLF 352 >UniRef50_A6DFD9 Probable transcription repressor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFD9_9BACT Length = 320 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 126/257 (49%), Gaps = 22/257 (8%) Query: 146 LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEAL 205 L++I PG+++ + G+V+ P K PL E L Q +PV+I++D++A E Sbjct: 64 LSAIGGCAPGLVEPKTGLVYDTPNL-GFKNFPLQEKLSQDFNIPVHIENDVNAGLYGELH 122 Query: 206 FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCL 265 FGA+RG +V+ + VG ++ DG L+ E GH V P G C CG GCL Sbjct: 123 FGAARGMENVLALSPGTGVGGAIVIDGKLIRGSRGGAGEFGHIIVQPDGPLCGCGQRGCL 182 Query: 266 ETIASVDSILELAQLRLNQSMSSMLHGQ-PLTVDS------------LCQAALRGDLLAK 312 E I+S ++ + Q +S + G+ PL +D + +A GD + Sbjct: 183 EAISSRTALSQ-------QILSFAVRGRVPLVIDEAKGNLKKVKSGLIARAYNSGDEDVQ 235 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI-RQQALPAYSQHI 371 I+ ++G ++ +VN FNP+ I++G L +A F IS + R++A+ + + Sbjct: 236 AIVDYAARYLGVGMSNLVNSFNPEAIILGGGLIEALPEPFLKISTKVMREKAMGVNGEKV 295 Query: 372 SVESTQFSNQGTMAGAA 388 V + + + + G+A Sbjct: 296 KVLAAELGDDAVIKGSA 312 >UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D498_GEOSW Length = 397 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 174/363 (47%), Gaps = 13/363 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G+I +K+ N V +LI + +SR +++++ L A+++ +V E++ H V E I Sbjct: 3 RTGNIGLVKKINKQIVLKLIREKNNISRAEIAKITGLNKATVSALVDELISEHFVSESGI 62 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPL 124 + RP + L A + + + I+ L DL+++++ E+ A + + Sbjct: 63 GVSTGGRRPLM-LRFNEAAGSLIGIELGVNYIYAVLTDLNAEIIWEKMCPFRANEKQETI 121 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMP-FYEDVKEMPLGEALE 183 ++++I+ I + + + I I +PGI+D E G+V P + D + L L+ Sbjct: 122 IEKMIAMIHEAIRQAPTTPYGIMGIGIGVPGIVDAEEGLVVFAPNLHWD--HVSLSSILQ 179 Query: 184 -QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 Q P+ I+++ + E FGA + + + V +GAGVI L Sbjct: 180 KQWPNYPIIIENEAKLAALGEKWFGAGKEFANFVYVSAGIGIGAGVIIHNQLYRGIDGIA 239 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQS-MSSMLHGQPLTVDSLC 301 EIGH +D +G RC CGN+GC E AS I Q RL Q SML G +V+ + Sbjct: 240 GEIGHHVIDVHGFRCSCGNNGCWEMYASEKYI----QRRLEQEHYHSMLEG--FSVEKVR 293 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A GD I+ VG ++G + ++ +NP+ +++GS + KA + + + + Sbjct: 294 ALAESGDKQMAQILAEVGHYLGIGILHIIYAYNPEAVIVGSTIGKAGKWVLEPAREEVEK 353 Query: 362 QAL 364 + L Sbjct: 354 RIL 356 >UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3141A Length = 397 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 99/379 (26%), Positives = 180/379 (47%), Gaps = 19/379 (5%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 +QTN V R + + +R +L+ L+ +++ + E+++A +V + E + GR Sbjct: 12 RQTNRFKVLRALYEHPGSTRTELAADTGLSRPTVSTVTDELVQAGIVAQHEDTQP-RTGR 70 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL--LDRIISH 131 P V L + + A + + L + + +A+ DLS +++ E + A D P+ D Sbjct: 71 PPVLLSLASGAAYAVGLDMGHAHVQVAVSDLSGQILGHE-RSAADVDHAPVESFDLAGEL 129 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHR---MPFYEDVKEMPLGEALEQHTGV 188 + + L+R+ + + L +D G V +P + V+ P E +E + Sbjct: 130 VHGALGQAGVPLDRVIGVGMALAAPVDRATGTVFADGILPSWGRVQ--PAIE-MEARLDL 186 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PV + +D + + E +FGA R +++ V + +G G++ G S E+GH Sbjct: 187 PVMVHNDANLGALGEHVFGAGRDVAEMMYVRLSAGLGLGLVLGGRPYGGTSGVAGELGHV 246 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 +V P G C CGN GCLET+AS ++ L L S +P++V+ L + GD Sbjct: 247 RVAPEGLICRCGNRGCLETVASSTAVARL----LAHSRD-----EPVSVERLLELVADGD 297 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 A+ + G VG LA +VNLFNP+ I++G L+ D L + +I + A+ + Sbjct: 298 RGARRAVAEAGKTVGEALATVVNLFNPELIIVGGDLAAGGDALLAPLRTAIDEYAVAPAA 357 Query: 369 QHISVESTQFSNQGTMAGA 387 ++V ++ + GA Sbjct: 358 GAVTVSLGALGDKAEVLGA 376 >UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B8FTN1_DESHD Length = 406 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/351 (23%), Positives = 172/351 (49%), Gaps = 10/351 (2%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 A + LI G +++ L+++A L ++ +++ + +A L+ E E+ GR V Sbjct: 19 AKKILGLILHKGGMTKSQLAKVAGLKLTTLNRMMLPLEKADLILPTETGESTG-GRKPVI 77 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP--LLDRIISHIDQF 135 V ++ + + ISR + L +L +L+ ++ ++ ++ P L+RI+ I + Sbjct: 78 YDVNPRRYYVIGIDISRLYSQVVLTNLKMELIEKDRFDMD-RNSSPQATLNRILDWIGR- 135 Query: 136 FIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYE--DVKEMPLGEALEQHTGVPVYIQ 193 + ++ + + I G +D ++GI+ +E + +PL +E+ TG+PV I Sbjct: 136 -VMEKRGHGYVIGVGIGTVGPLDRQSGIILNPENFEAQGWENIPLKAIVEERTGLPVIID 194 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 + + +AE +G+ +G + VI + + GVI+ G L+ + + H +D Sbjct: 195 NGANGAVLAETRYGSGKGMKSVIYLNCGVGIRTGVISSGTLVRTINDADDTFAHMVIDVN 254 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG--QPLTVDSLCQAALRGDLLA 311 GK C+CGN GC+E +S+ +I+E + Q H +P++ LC+ A D +A Sbjct: 255 GKPCHCGNQGCVERYSSIYAIMEALAEEMPQGKDRRNHKADRPVSYLELCREAEENDTIA 314 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 + ++ +G LA + L NP +++ PL + + + V ++ +++ Sbjct: 315 RQVLQNAAVRMGTGLANFIQLLNPGLVVLSGPLILHSQLFYEVCVEAAKRR 365 >UniRef50_C8X8S2 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X8S2_NAKMY Length = 391 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 157/366 (42%), Gaps = 23/366 (6%) Query: 31 VSRIDLSRLAQLAPASITKIVREMLEAHLVQE---LEIKEAGNRGRPAVGLVVETEAWHY 87 V+R DLS + L+ +++ + V+++L L+ E RGRP+ LV Sbjct: 28 VTRADLSLITGLSRSAVAETVQDLLNERLIAEDVLAAGGRGAGRGRPSALLVASGGTGSV 87 Query: 88 LSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-LDRIISHIDQFFIRHQKKLERL 146 + + + +A+ + EE + + + LD + + + + + + Sbjct: 88 VGIDFDHERVTVAVAGSDGSIRGEEHAAVNVDSEAAAALDVSVGMVHRLLGQTGTSMSDI 147 Query: 147 TSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALF 206 SIA +P +D +H + E L G PV I +D + E + Sbjct: 148 RSIAAGVPAPLDMRTNRIHSASVLTGWVGLDPAEELSNRLGRPVLIGNDADLGAVGELRY 207 Query: 207 GASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLE 266 GA++GARD I V +GAG++ G H + + EIGHT++ G C CGN GCLE Sbjct: 208 GAAKGARDFIYVKASEGIGAGLVLGGSAYHGATGAAGEIGHTRLGEQGTWCRCGNRGCLE 267 Query: 267 TIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITG-----VGAH 321 T+ S + L M+ + G P D A AK +TG G Sbjct: 268 TVVSSTLVRRL--------MTEL--GIPRGRDETFPLA----DAAKHPVTGRFISEAGRT 313 Query: 322 VGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQ 381 +GR+LA + N NP I++G L A + L + +SI + A PA + + V+ + Sbjct: 314 LGRVLADLCNCLNPSLIVLGGELGTAGEPLADGVRESINRFAQPATAASLEVKVGALGLR 373 Query: 382 GTMAGA 387 + GA Sbjct: 374 AELLGA 379 >UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6LW15_CLOB8 Length = 382 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/381 (21%), Positives = 186/381 (48%), Gaps = 17/381 (4%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 +IK+TN + L+ + ++++D+SR+ ++ +++ + E+ +V+++ E+ Sbjct: 8 KIKETNRKKIIALLLKKNEITKLDISRILDISITTVSTNITELKSEGIVEDVRSLESTG- 66 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD--LPLLDRII 129 GR A+ + + + + + ++ I ++L ++ K++ ES + D +++ + Sbjct: 67 GRKAIAIKLNENCRYSIGVALTPNHIKISLVNIKKKVI--ESMRVRHNSDGIENIINLLN 124 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 +ID ++ L I I+LPG +D + GI+ + + K+ L E E + +P Sbjct: 125 ENIDLLMKKYNLCSANLLGIGISLPGTVDFKEGII-KYSYLLGAKDFNLKEKFE-YLDIP 182 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 VY+ ++ + E L R+++ V I +G G+I +G + ++S E+GHT+ Sbjct: 183 VYVDNEANLSAYYEFL-NKRDILRNLLYVSITEGLGLGIIINGKIYRGDNNSSGELGHTK 241 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 + GK+C CG GCLE S++S+++ N++ SS + +D + + D Sbjct: 242 IAIDGKKCKCGARGCLEAYTSMNSLID----SYNEANSSNIS----DIDEFEERYNQNDK 293 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 A D++ + L+ +V +F+P I+IG ++ + ++ + + L Sbjct: 294 DAHDVLNDYLKTLSLGLSNLVMIFDPSSIVIGGDINNLLNDKIDMLKKEVYKDNLFTNEN 353 Query: 370 HISVESTQFSNQGTMAGAALV 390 + S+ F + + GAA++ Sbjct: 354 NCSISIASFK-ESYLLGAAMM 373 >UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=A1WMZ8_VEREI Length = 372 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/272 (23%), Positives = 135/272 (49%), Gaps = 6/272 (2%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +L ++ + + R +L +I + +PG +D +G + P D + + L Sbjct: 89 ILAQLCGLMRELMARCGLSSSQLIAIGMGVPGPVDFASGQLVNPPLMPDWDGFSIRDYLR 148 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + PV++ +D++ + + L+ R D + + + +G G++ G + + S Sbjct: 149 EAFVAPVFVDNDVNLMALGK-LWRLQRTLSDFLVIKVGTGIGCGIVCHGQVYRGTNGSAG 207 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSI----LELAQLRLNQSMSSMLHGQ-PLTVD 298 ++GH VD G RC+CGN GC+E +A+ ++ +E+AQ + ++ L L ++ Sbjct: 208 DVGHICVDQAGPRCHCGNQGCVEAMAAAPALVRAAIEVAQKGESSWLAERLQASGSLGIE 267 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 L QA+ GD+ A +I G+ VG++LA +VN FNP + IG ++ + + S Sbjct: 268 DLAQASRVGDVAANILIQRAGSLVGQMLASVVNFFNPSHVFIGGLVADMGPLFLASVRQS 327 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 + ++L ++H+ ++ ++ + GA ++ Sbjct: 328 VYHRSLALSTRHLEIQCAPLADDAALVGAGVL 359 >UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRA6_9BACI Length = 387 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/382 (25%), Positives = 182/382 (47%), Gaps = 29/382 (7%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 ++KQ N + + + QL P+SR DL+++ L A+++ +V E+++ H ++++ + ++ Sbjct: 7 EVKQQNKKLILKTVYQLEPISRADLAKVLSLTKATVSNLVDELVQEHYLEQVGLGKSSGG 66 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSS---KLVVEESQELALKDDLPLLDRI 128 RP + L + +A + +S+ I I L DL K VE + +D + ++ + Sbjct: 67 RRPLM-LKINEKAGYTISVDIGVNYIRSILTDLKGGIMKKAVETTDTNVYEDTMRYIETM 125 Query: 129 ISHI-----DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 ++++ D F L I +PG++D++ G V P D +E + + E Sbjct: 126 VNNLINDMDDAPF--------GLVGIGFGVPGLVDSD-GTVISTPNL-DWQESDIRKRFE 175 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 V V ++++ +A E FG + I + +G G+I DG L + Sbjct: 176 AAFDVHVIVENEANAGAFGEKSFGEGISSDHFIYISGGIGIGVGLIFDGVLYRGRNGFTG 235 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E+GHT + G C CG GC E AS EL L+ + + M Q +++ +A Sbjct: 236 ELGHTIIQMDGLTCSCGKKGCWERYAS-----ELYILKEYEKLKGMPWHQLTLEEAVTEA 290 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A D+ A I H L ++N FNP+KI++G+ L++A + PVI + I + A Sbjct: 291 AADEDVRA--IFHRAARHFAIGLTNIINSFNPEKIIVGNRLTQAEQYMLPVIEEVIAETA 348 Query: 364 LPAYSQHISVESTQFSNQGTMA 385 + ++ + + F+N +A Sbjct: 349 ISPIAKGVGI---HFNNTDQLA 367 >UniRef50_A4XDL3 ROK family protein n=2 Tax=Salinispora RepID=A4XDL3_SALTO Length = 393 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 99/382 (25%), Positives = 165/382 (43%), Gaps = 15/382 (3%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 D+I++ N GA+ R + G SR +L+ L ++I + ++ A LV E KE G Sbjct: 8 DEIRRQNLGALLRYVHMHGATSRAELTTTLGLNRSTIGALTTDLAAAGLVSEGTPKETGR 67 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GRP++ + E+ H + I + A L ++ + +ELA + + Sbjct: 68 AGRPSLVVRPESARVHAYAYSIEVDRLRAARIGLGGGVL--DRRELARPRGITAAEAAPL 125 Query: 131 HIDQFFIRHQKKLERLTSIA--ITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG- 187 Q + + + G++ ++G+V P V E P+G A+ G Sbjct: 126 LARAAREMQQSTPTDAICVGAGVAVCGLVRRDDGLVRLGPTMGWVDE-PIGAAIGAELGL 184 Query: 188 -VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 VPV + + AE GA+ G ++I + D VGAG+IT G L E+G Sbjct: 185 DVPVVVGNVADVAAFAEHTRGAATGCDNLIYLYGDVGVGAGIITGGRRLTGHGGYGGEVG 244 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 H V G RC CG+ GC ET +L A Q ++L ++ AA R Sbjct: 245 HMVVRRDGTRCECGSRGCWETEIGEHGLLRAAGRSDTQGRDAVL--------AVIDAADR 296 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 GD A+ + G +G +A +VN+FNP+ ++ G + + + ALPA Sbjct: 297 GDAQAQTAVRTAGDWLGFGVANLVNIFNPELVIFGGAMRDLYLAAAAQVRSRLNASALPA 356 Query: 367 YSQHISVESTQFSNQGTMAGAA 388 +H+ + + + + GAA Sbjct: 357 CVEHVRLRTPALGDDAALIGAA 378 >UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAB7_DICT6 Length = 375 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 96/387 (24%), Positives = 183/387 (47%), Gaps = 39/387 (10%) Query: 17 NAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAV 76 N V ++ + GP SR +L+R+++L +I++IV E++E +++ E+ E +RGR Sbjct: 14 NKNLVLEILIKTGPKSRAELARISKLTKTAISEIVDELIEKNILVEIGKVET-SRGRRPT 72 Query: 77 GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL-PLLDRIISHIDQF 135 L + + L++ +S E + D S K+ + + K+DL L+D ++ Sbjct: 73 KLTINPDL-KILAIDLSGLEGRSGIVDASGKVEEDFYYPIKRKEDLFELIDPLL------ 125 Query: 136 FIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL-EQHTGVPVYIQH 194 KK + + +I+I++PGII+ NG V + + + L E L E++ +P+YI+ Sbjct: 126 -----KKYKNIIAISISVPGIINKYNGEVI-LSVGLNWRNFLLKEFLKERYPNLPIYIEK 179 Query: 195 DISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD-PY 253 D ++ ++E FG + + ++ + +G G+ +G+++ ++ EIGHT V+ Sbjct: 180 DTNSGLLSELWFGEGKKFNILFYLLFEKGIGLGIYYNGNIIEGFNNIEGEIGHTIVNGDI 239 Query: 254 GKRCYCGNHGCLETIASVDSILE-LAQLR-LNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 + C+CGN GCLETIAS I E + + L +S+ S G D + R Sbjct: 240 AEICWCGNKGCLETIASFPKIQEKFSDFKLLEESLKSYNQGDK---DPFLEEIFR----- 291 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADIL---FPVISDSIRQQALPAYS 368 ++G LA V++ P+ I + +IL ++ + + Sbjct: 292 ---------YLGISLANAVHIIAPEAICVAGNRGMTRNILNLFTEILKKEVDKYIFEYLK 342 Query: 369 QHISVESTQFSNQGTMAGAALVKDAMY 395 I ++ N G + GA ++ Y Sbjct: 343 DKIYFYASPLGNDGLLIGAGILGFTNY 369 >UniRef50_D1CHY2 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CHY2_THET1 Length = 313 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 10/238 (4%) Query: 146 LTSIAITLPGIIDTENGIV----HRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTM 201 L I + G+ID G V ++P DV+ + +G L++ GVP + +D + + Sbjct: 60 LGGIGVGFTGVIDPSTGTVLQLNGKIP---DVEGVSVGGYLQEAFGVPTKVDNDARVYAL 116 Query: 202 AEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI--GHTQVDPYGKRCYC 259 E ++GA RG DV+ V I VG GVI G LL + S L I GH VD G C C Sbjct: 117 GEWVYGAGRGYSDVVCVTIGTGVGTGVIAGGRLLRS-SGLLAGILGGHFTVDVNGSLCSC 175 Query: 260 GNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVG 319 GN GC E AS +++ L + S L G L+V+ + A RGD LA + Sbjct: 176 GNIGCWEVYASATALVNAMADHLGRGCGSELVGGELSVERVLGAVERGDGLACWVFERWL 235 Query: 320 AHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ 377 ++ + +++ ++PQ ++IG + +++ P + + +R A + V + Sbjct: 236 RYLASGVVTLIHAYDPQVVVIGGGVMARGELVLPRVREHVRAHAWTYPKGRVEVRGAE 293 >UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillus sp. B14905 RepID=A3I7X3_9BACI Length = 383 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 178/388 (45%), Gaps = 31/388 (7%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 Q+++ N V I Q+ P+SRI LS+ +++P +IT+IV+E+ + E +E Sbjct: 8 QMRRQNKYIVLDAIRQMAPISRIQLSKYTKMSPTTITRIVQELEAEGFILEGVSEETAIG 67 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK----DDLPLLDR 127 RP + + + +A + + + I I L + D KL+ + + ++K + + LL Sbjct: 68 RRPTL-IHMREDALYTIGIEIDCFTIRLGILDFLGKLIAFQEIKCSIKHRYEEAIHLLKN 126 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIV--HRMPFYEDVKEMPLGEALEQH 185 I+ I +Q E+L I I +PG+I+ E GI+ +E+ + +GE L Sbjct: 127 SIATI---MSEYQIAQEKLLGIGIGVPGVINNEEGIIVSSEQLKWENCR---IGEDLNGV 180 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 V + +++ +AE + + I V + VGA ++ +G + + EI Sbjct: 181 FDCEVIVDNELKMQIIAEIGDIYTPLYSNCILVGMGTGVGASILLNGEVYRGIQNKAGEI 240 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLN-QSMSSMLHGQPLTVDSLCQAA 304 H ++P+G+ C+CG GCL S ++L L QS+ +L Q Sbjct: 241 SHITINPFGEMCHCGKRGCLSMYISEMTLLNRTPKNLTIQSIEEVL-----------QCV 289 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 RG+ A DI V ++ + +V L+ P+ +++ + + ++S+ +Q Sbjct: 290 DRGEQWAVDIQQDVATYLAIAINNLVCLYEPEAVIVSGEIIEHNVTFQKLLSEKCKQYIW 349 Query: 365 PAYSQHISVESTQFSNQ---GTMAGAAL 389 H + QFSNQ G + GAAL Sbjct: 350 KELQPHFVL---QFSNQLKEGVVKGAAL 374 >UniRef50_C5EMS9 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EMS9_9FIRM Length = 386 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 131/290 (45%), Gaps = 4/290 (1%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +K+ N G + +LI +R++L + +IT +V E+ + LV+E + + G Sbjct: 11 VKKHNRGQILKLIATGTCNNRVELVAHMGMTKMAITNMVSELADKGLVKEGGVDQCDGVG 70 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R + L + A + + I R L D + ++ L D L+ II + Sbjct: 71 RNPISLRIPEGAPKTIGILILRDRCEAVLCDFYLNVQYRKTVMLQQPDKRELIS-IIYAL 129 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 + ++K + I I G ID + G++ P++ + ++P+ LE +PV++ Sbjct: 130 TDAMLGYEKNI---LGIGIASIGPIDFDRGMILNPPYFYGIHDIPVASLLEDRYSLPVFM 186 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 HD + +AE L+G + + + + VG G++ +G L E+GH +D Sbjct: 187 DHDNQSAALAELLYGNGKNRDSFMLLGMARGVGCGIVKNGALYVDSRKLAPEVGHVSIDY 246 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 GK+C CGN GCLE + D IL + QS+S D +C+ Sbjct: 247 RGKKCICGNRGCLELYVNTDEILGRLRKATGQSLSFAGFCHMKETDRMCE 296 >UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EN99_9FIRM Length = 450 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 19/345 (5%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAH-LVQELEIKE 67 +++ +K +N A+ +L++ G +SR D++ L PA++T I ++L A LV++ E++E Sbjct: 56 NLENVKVSNRSAILKLLNDHGAMSRKDIALELGLTPATVTLICTQLLSAGILVEKGEMEE 115 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL--- 124 GR V + + + + LS+ I E +++ DL +L+ LK D L Sbjct: 116 EKRAGRKKVSIDINYQYKYVLSVSIEAPETCISISDLKGRLIAGRK----LKTDGALEPQ 171 Query: 125 --LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGI-VHRMPFYEDVKEMPLGEA 181 L ++ E + I+LPG + + G+ +H + + +P+GE Sbjct: 172 VFLKQVADEGKSLMWEQGISKESVLGAGISLPGPVKRDTGVSLHAYRIWNEA--VPVGEY 229 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 ++ + +PV +++++ A+ E ++G + +++ + VG+ +I + + +S Sbjct: 230 MKMYLDLPVVVENNVKAFAEGELIYGTGKNQENLLFIKWGPGVGSAIIIQNKIYDSQNSK 289 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPL 295 EIGH V+P G C CG GCLET + ++ E + + L+ + + Sbjct: 290 TAEIGHYIVEPGGLPCRCGRRGCLETHVATHAMAERVRRACTKESMPGLYAFVDGDVEKI 349 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILI 340 V ++ Q D + II + + R + + L P K++I Sbjct: 350 EVRNMEQWIEIEDPGLQKIIDDIVERLARTVVNTITLLAPDKVII 394 >UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178996E Length = 317 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 137/276 (49%), Gaps = 8/276 (2%) Query: 96 EIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPG 155 +I AL D +L+ E E A + +++ I IR L + + PG Sbjct: 21 KIAAALFDSEGQLLNREQMETA---GARTAEEVVARITNM-IRSVSGGHPLRGVGMASPG 76 Query: 156 IIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDV 215 +++ GIV + +PL +E+ V + +D +A E + GA RG+ ++ Sbjct: 77 TVNSREGIVIHGTNLPEWTNVPLKAWMERDLNTEVQVLNDANAAAWGEYVRGAGRGSTNM 136 Query: 216 IQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSI- 274 + V + +G+G++ DG L +S E+GH +DP G +C CG+HGC E AS +I Sbjct: 137 VYVTLSTGIGSGIVLDGKLFLGSNSFAGELGHHIIDPSGPQCNCGSHGCWEVFASGTAIG 196 Query: 275 LELAQLRLNQ-SMSSMLHGQPLTVDS--LCQAALRGDLLAKDIITGVGAHVGRILAIMVN 331 L +Q L Q S+ S L V++ + +A D +A ++I ++ L +++ Sbjct: 197 LAASQRMLTQTSVISELAAADGGVNARHVFEAKRLHDPVAVEVIDRAVYYMALGLVNVIH 256 Query: 332 LFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 FNP +I++G +S+A ++LFP + + + +P+Y Sbjct: 257 SFNPDRIVVGGGVSRAGELLFPQLREMTDKLVMPSY 292 >UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=Clostridia RepID=A5CYL2_PELTS Length = 337 Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 139/284 (48%), Gaps = 8/284 (2%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 ++DRI+ ++Q +++ ++A+ PG +DT G++H P +P+ + LE Sbjct: 44 VIDRIVHSVEQVRENVAVPPQKVLALALGAPGPLDTAGGVIHFAPNLR-WNNVPIRQILE 102 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + +PV + +D + + E +FGA RG +++ + + VG G+I DG L S Sbjct: 103 ERLSLPVLLDNDANLAALGEHVFGAGRGCGNMVYITVSTGVGGGLILDGKLYRGSSDGAG 162 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSI----LELAQLRLNQSMSSMLHGQPLTVD- 298 EIGH V P G C CGN GCLE +AS +I EL + + + G P ++ Sbjct: 163 EIGHMTVLPDGPVCSCGNRGCLEAMASGTAIARAAAELVASGGGRKILAAAGGDPGRINA 222 Query: 299 -SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 ++ AA GD A II ++G +A ++NL NP +++G + + + ++ + Sbjct: 223 AAVAAAAAGGDPEAAAIIDRAAGYLGIGVASILNLLNPAMVVLGGGVMEIGEPVWKGVRR 282 Query: 358 SIRQQALPAYSQHISVESTQFSNQ-GTMAGAALVKDAMYNGSLL 400 ++ +AL A + + + G M AL + +G+ L Sbjct: 283 EVQARALQAARSRARLVPAELGGRAGVMGAIALALQEIADGNCL 326 >UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SD76_9ACTO Length = 390 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 175/372 (47%), Gaps = 35/372 (9%) Query: 32 SRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG-----RPAVGLVVETEAWH 86 SR +L L + +++ V +++ A+L+ E G RG RP L + A Sbjct: 24 SRAELVALTGASRNTVSARVDQLIAANLLAE------GGRGWSTGGRPPTLLQFNSRAGC 77 Query: 87 YLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQF--FIRHQKKLE 144 L++ + + +A+ DLS++++ + + D +++ +D+ + LE Sbjct: 78 VLAVDLGVTSVDVAVTDLSAQVLATVGHPIDIADGP---RPVLAEVDRLAQLVLADAGLE 134 Query: 145 --RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMA 202 + ++ I +PG ++ +G P + P+ A ++ PVY+ +D++ + Sbjct: 135 PADVCAVGIGVPGPVEHSSGRPSHPPIMPGWHDFPIPSAFGRYE-CPVYVDNDVNVMALG 193 Query: 203 EALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD-PYGK--RCYC 259 E GA+ +DV+ V + +G GVI DG + S +IGH V P G+ C C Sbjct: 194 E--MGAAGSVQDVLVVKVGTGIGCGVIVDGRVYRGAQGSAGDIGHIHVTTPDGRLVTCRC 251 Query: 260 GNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL-TVDSLCQAALRGDLLAKDIITGV 318 G CLE +A ++L ++ G P+ T + + A +GD A +++ Sbjct: 252 GQENCLEALAGGGALLR----------DAVAAGLPVSTTREVVERAAQGDGAAIELVREA 301 Query: 319 GAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQF 378 G +G +LA +VN FNP +I++ +++A L I +S+ ++++P ++ + + ++ Sbjct: 302 GRTIGTVLAALVNFFNPHRIVVTGGVAQAGVPLLAGIRESVYRRSMPLAARALEITVSEA 361 Query: 379 SNQGTMAGAALV 390 GAAL+ Sbjct: 362 PELSGRVGAALM 373 >UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobacteria (class) RepID=Q1AZ04_RUBXD Length = 402 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 172/375 (45%), Gaps = 18/375 (4%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA-GNRGRPAVG 77 G ++ LI +R +L+ + L A++++ V ++EA LV +E KE GRP + Sbjct: 10 GQIFGLIRSGRARTRAELAAVTGLTRATVSQRVEVLMEAGLV--VETKEGVSTGGRPPMV 67 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLPLLDRIISHIDQFF 136 L +A L+ + LA+ DL + +VE +L + + +L + ++ Sbjct: 68 LGFNKDAGVVLAADLGATHCRLAVADLGGRPLVELPADLDIAQGPDAVLGWVQDRFEELL 127 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL-EQHTGVPVYIQHD 195 + E + I + +PG +D G P +P+ E E+ GVPV + +D Sbjct: 128 EEAGRSREEVWGIGVGVPGPVDFARGQAVSPPIMPGWDRVPIPERFRERFGGVPVLVDND 187 Query: 196 ISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGK 255 ++ + E S ++ V + +G G++ G + + +IGH ++ + + Sbjct: 188 VNIMALGEHRVNWSD-VEHLLFVKVATGIGCGIVAGGRIHRGERGAAGDIGHIRISGHEE 246 Query: 256 R-CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR-GDLLAKD 313 C CGN C+E +A L + +S + G P T +R G+ A Sbjct: 247 TVCRCGNVACVEAVAG--------GWALAKQLSGL--GYPATGSRDVVGLVRAGNPAAAR 296 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 ++ G +G +LA +VN FNP I+IG L+ A + LF I + Q++LP ++H+ + Sbjct: 297 LVRTAGELIGEVLASLVNFFNPAVIIIGGDLAHAHEQLFAGIRSVVYQRSLPLATRHLQI 356 Query: 374 ESTQFSNQGTMAGAA 388 ++ ++ + GAA Sbjct: 357 VPSELDDRAGIHGAA 371 >UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_ANATD Length = 399 Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 91/381 (23%), Positives = 181/381 (47%), Gaps = 9/381 (2%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREML-EAHLVQELEIKEAGNR 71 +KQ N V + I +SR +S+L L A+++ + E++ E ++V++ K G R Sbjct: 7 LKQINKLLVLKTILDNKIISRTKISKLVDLNKATVSNLTDELIKEGYVVEKGYGKSKGGR 66 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 RP + L V + + + + I + L + +++ EE + + +D L R++ Sbjct: 67 -RPVL-LQVNKDVGSIIGIDLGVDYIHIILSNFVGEVIFEEYANMKIGEDKEKLLRLLFD 124 Query: 132 IDQFFIRHQKKLERLTSIAITLPGII-DTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + + ++ + + I + E+G V P + + +PL ++Q +PV Sbjct: 125 LIEKSVKKAPQTPKGILGIGIGVPGIIEKESGTVLLAPNLK-WQNVPLRSIVQQKFNLPV 183 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 YI ++ +A + E FG D+I + + +GAG+I D L + E+GHT + Sbjct: 184 YIDNEANAGALGEKWFGEWGKVSDLIYLSVGIGLGAGIIIDNKLFRGAAGFAGEVGHTTI 243 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMS----SMLHGQPLTVDSLCQAALR 306 + C CGN GCLE AS ++L + + + Q + S + +T + QAA Sbjct: 244 NFQDDVCSCGNIGCLENFASERALLSVIKKLVKQGVEDRYISWENVDEITPSRIIQAAKE 303 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 G + + I V +G +A +VN+FNP+ ++IG+ S ++ + + I Q++ A Sbjct: 304 GSRVCRMAILEVAEKMGIGVANLVNIFNPEMVIIGNKASFFGELFLEKLREVINQRSFIA 363 Query: 367 YSQHISVESTQFSNQGTMAGA 387 ++ +E ++ ++ + G Sbjct: 364 QFYNLKIEVSKLKDRAVVLGC 384 >UniRef50_A3CKM1 ROK family protein, putative n=2 Tax=Firmicutes RepID=A3CKM1_STRSV Length = 398 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 86/364 (23%), Positives = 172/364 (47%), Gaps = 23/364 (6%) Query: 24 LIDQL---GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVV 80 ++DQL P+SRID+S+ Q+ PA+ I+ E+++ LV EL + GR L + Sbjct: 14 VLDQLYAKRPISRIDISKETQITPATTGSIINELIKEGLVLELGELNDESVGRKKTLLDI 73 Query: 81 ETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQ 140 + +YL IS ++ + + D + ++ + ++ D+ I + Q F++ Sbjct: 74 APRSRYYLGFEISEKQLAIVIADNTGEIAESSIRTYQIEVTGGPSDQEIIRLIQDFLKKN 133 Query: 141 KKLERLTSIAITLPGIID--TENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISA 198 + +++IA+ LPG ++ + I+ + P + + + EA + +PVY + Sbjct: 134 SQYP-ISAIALGLPGHVNLSESDFIISKNPHWGQINLQTIQEAFD----LPVYFANKSHC 188 Query: 199 WTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCY 258 TMAE LF + I + + + G + + + E+GHT ++P G+RC Sbjct: 189 LTMAERLFSYHPTDSNFIVYHVARGIHCSYMYKGSIYSQENYLIGEVGHTVINPEGERCP 248 Query: 259 CGNHGCLETIASVDSILELAQLRLNQSMSSMLH-----GQPLTVDSLCQAALRGDLLAKD 313 CG HGCL+ AS ++++ A + S +S+L + + SL A GDL + + Sbjct: 249 CGKHGCLQVYASESALIDKAAILYRASQTSLLKTLVEDANDIDLTSLMTAYRLGDLGSIE 308 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI---RQQALPAYSQH 370 +I ++ ++ + L + ++I + L +PVI++ + +Q +P + + Sbjct: 309 LIHTACRYLAISISNLCQLIDSERIYLDGQL-----FSYPVIAEQVLAQLEQEVPLFPKQ 363 Query: 371 ISVE 374 E Sbjct: 364 KQAE 367 >UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepID=B7GQ98_BIFLI Length = 404 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/357 (24%), Positives = 168/357 (47%), Gaps = 9/357 (2%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 + ++N + + + G SR +++ +L PA+ITKI ++EA +++E E G++ Sbjct: 13 SVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMIEETGDLE-GSK 71 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 R ++GL ++T + + ++ +R + + + DL + E+ L D + D I++ Sbjct: 72 NRRSIGLKLDTTRFRIIGIKFARSLVQIGVFDLCGNTLSFEN--LPTVYDNTINDTIVT- 128 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 I Q + + +I + +PG G + + +++ + VPV+ Sbjct: 129 IHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGRTAVVSSMQGWRKINFIDEFATAFRVPVF 188 Query: 192 IQHDISAWTMAEALFGASRGAR-DVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 I+ D A +A LF S A ++ ++ VG GVI +G L++ + EIGH + Sbjct: 189 IEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAATEIGHISI 248 Query: 251 DPYGKRCYCGNHGCLETIASVDSILEL--AQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 D G+ C CGN GCLE S +I ++ A + + M + GD Sbjct: 249 DVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARALFAKAG--DGD 306 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 A I+ V +VG + N +NP+ I+IG +++A IL + ++ ++A+P Sbjct: 307 EAAIAIVREVAQYVGYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAERAIP 363 >UniRef50_C7IE75 ROK family protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IE75_9CLOT Length = 412 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/343 (22%), Positives = 168/343 (48%), Gaps = 13/343 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR- 71 +K N ++ LI + G +SR +++ L PA+IT I +++ ++ E +++ NR Sbjct: 16 VKIKNRSSILYLIYRSGGISRKEIANKLNLTPAAITLITTDLINEGILVESAVEQNNNRK 75 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA--LKDDLPLLDRII 129 GR + L + + + + + IS + + DL++ ++ E++ A K +LD++ Sbjct: 76 GRKEILLDINRKKYATIGIYISTNKFQILCMDLNNIVIFEDTVFTADCHKKSSAILDKVC 135 Query: 130 SHIDQFFIRHQ-KKLERLTSIAITLPGIIDTENGI-VHRMPFYEDVKEMPLGEALEQHTG 187 + ++ I + + + + +++ GI+++ G+ ++ +ED + + E +++ Sbjct: 136 TILEHNLIYYDIVRTRTILGVGVSVKGIVNSRAGVSINSYNVWED--NVNVVEYIQKRMK 193 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 VP + ++I + E+ F +D++ + VGA + L + +++GH Sbjct: 194 VPAILTNNICSLAHGESFFANMEHPKDMLFIKYGPGVGAARVFYQDTLSVYDFNAIQLGH 253 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLC 301 T DP G C CGN GCLETIA D+I A L+ ++ L + + + + ++ Sbjct: 254 TIADPNGAICECGNRGCLETIAGYDAIERNAANILSNKLTPYLFSYTDGNTENINIKNII 313 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPL 344 +A GD L +DI+ + + + LF+P+ I++ L Sbjct: 314 KAYYDGDKLIEDILDRSIYFLSIAIKNAMCLFDPKSIILYGEL 356 >UniRef50_D1BD50 Transcriptional regulator/sugar kinase n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BD50_SANKS Length = 380 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/305 (26%), Positives = 147/305 (48%), Gaps = 19/305 (6%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 GP+SR +LSR L+PAS+T++ R L++ ++ E G GRP L V +A ++ Sbjct: 26 GPISRTELSRRLGLSPASLTRLSRTFLDSGILVEGPEVSDGAVGRPVKPLDVRVDARRFV 85 Query: 89 SLRISRGEIFLALR-DLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLT 147 ++++ GE L + DL + S +LA LD ++ I++ + Sbjct: 86 GIKLT-GEAALGVSTDLRADQTGSASSDLAST----TLDGVLDAIERV-VGALGGPAGFD 139 Query: 148 SIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFG 207 I ++L G + +G+V R PF +++ L AL G+P +++D+ A T AE FG Sbjct: 140 GIGVSLGG--NVSDGVVDRAPFLG-WRDVDLRSALVDRLGIPTTVENDVVALTAAEHWFG 196 Query: 208 ASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLET 267 A RG+ D + I VG G++ + H++ +GH +DP G C G+ GC Sbjct: 197 AGRGSTDFAVLTIGAGVGYGLVVNDHVVRTADVGFGLLGHFPLDPTGPLCMDGHRGCSTA 256 Query: 268 IASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILA 327 + + S+ + L + + T D + A + +A++++ +GR++A Sbjct: 257 MLTTGSMCAQVSVALARQV---------TYDEVLLLAAQDHPVAREVVGSAVRSLGRLIA 307 Query: 328 IMVNL 332 + N+ Sbjct: 308 AITNI 312 >UniRef50_A8S3B0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3B0_9CLOT Length = 314 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 138/270 (51%), Gaps = 15/270 (5%) Query: 109 VVEESQELALKDDLP-LLDRIISHID---QFFIR--HQKKL--ERLTSIAITLPGIIDTE 160 +++E+ + +++ P +++R +H++ Q R HQ +L E + ++LPGI+D E Sbjct: 17 ILDENGGILIQESFPSIVERYETHLELCVQAMKRLMHQTELQAEDFAGLGVSLPGIVDNE 76 Query: 161 NGIVHRMPFYEDVKEMPLGEALEQHTGVP-VYIQHDISAWTMAEALFGASRGARDVIQVV 219 GI+ P Y + K + + L ++ G+ V ++D++A + E FG D I + Sbjct: 77 KGILLYAP-YANWKNVEVAGYLSKNLGISRVRCENDVNACAIGEKRFGLGNNYTDFIWMT 135 Query: 220 IDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYG-KRCYCGNHGCLETIASVDSIL-EL 277 + VG V+ L+ G E+GH +V+ C CG +GCLE S +++ E Sbjct: 136 VSTGVGGAVVEGSKLVRGGLGFAGELGHLKVEYKSPAHCPCGQYGCLEAHGSGTALIRET 195 Query: 278 AQLRLNQ-SMSSMLHGQPLTVDSLCQAALR--GDLLAKDIITGVGAHVGRILAIMVNLFN 334 + RL + + L L D AAL G+ A DI+ +G ++GR ++ +N+ N Sbjct: 196 RKRRLTSPAFAKALDEMGLKPDGAGCAALARAGNTDALDILNQIGTYLGRGISYCINILN 255 Query: 335 PQKILIGSPLSKAADILFPVISDSIRQQAL 364 Q ++IG ++ + D+L P I S++Q A Sbjct: 256 TQAVVIGGGVAASLDLLLPSIRVSVQQNAF 285 >UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ANX8_SEBTE Length = 388 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/394 (22%), Positives = 179/394 (45%), Gaps = 27/394 (6%) Query: 22 YRLIDQL---GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI-KEAGNRGRPAVG 77 Y+ ++++ +SRI LS +L PA++TKI++++ L++ I K G GRP Sbjct: 9 YKALEEIRTNNKISRIKLSGSLELTPAAVTKIIKKLSGLKLIENNNILKSTG--GRPEKS 66 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFI 137 L + L + I AL L +L+ + + ++ +L + ID Sbjct: 67 LKINHRYKMILGINFGPEFIETALSYLDGELLCMKRRNFYIRSQEKILRILFEEIDNVLE 126 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDIS 197 + K + + I + L G ++ E GI P + K + + E +E+ +PV I +D+ Sbjct: 127 EYSK--DDILGIGLALHGTVNREKGISIFSPHF-GWKNLNIQELIEKKYSLPVIIDNDVR 183 Query: 198 AWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH-TQVDPYGKR 256 A +AE FG ++ + + + I + +G + +G S EIGH T V+ +R Sbjct: 184 AMAIAEHEFGRAQNTDNFLVIHISNGIGGAIFLNGKTYEGSDFSAGEIGHITAVENSSRR 243 Query: 257 CYCGNHGCLETIASVDSI-------LELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 C CG +GCLE +S ++I LE Q +++ S+ T D AA + + Sbjct: 244 CSCGKYGCLEAESSDEAIKNKVLTELEKIQEKVDISLK--------TEDIYKMAAEKKEP 295 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 ++ +G+ + ++N+ N + +++ + + F ++ I++ L + Sbjct: 296 YF-SVVRNSSYEIGKAVGNLLNILNIKLVIVAGRIVNTDSLFFVNLNKGIKKNILDGLEK 354 Query: 370 HI-SVESTQFSNQGTMAGAALVKDAMYNGSLLIR 402 + +V + + + G +LV ++ G LI+ Sbjct: 355 DLHTVPAKLYDSIGIYGAFSLVTTNLFKGRKLIK 388 >UniRef50_Q02B83 Glucokinase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02B83_SOLUE Length = 331 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 132/284 (46%), Gaps = 14/284 (4%) Query: 109 VVEESQELALKDDLPLLDR---------IISHIDQFFIRHQKKLERLTSIAITLPGIIDT 159 +V+ S + K +P++ + + ++ F +T I + PG +D Sbjct: 34 LVDSSGAITHKTRVPMISAGTAAAGFSAVSAAVEAIFSGAPGARAAVTGIGLCSPGPLDP 93 Query: 160 ENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVV 219 GIV P + PL +E+ GVP + +D +A +AE L+GA G +V Sbjct: 94 ARGIVINPPNLPCWRGFPLTAEVERAFGVPARVDNDANAAGLAEVLWGAGHGYANVFYAT 153 Query: 220 IDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQ 279 + +GAG+I D + H + S E GH +D G RC CG GC+E +AS +I LA+ Sbjct: 154 LGTGIGAGIIFDRRIYHGRTGSAAEGGHVTIDYRGPRCGCGKLGCIEALASGPAIARLAR 213 Query: 280 LRLNQSMSSM---LHG--QPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN 334 +L +S +S L G + + + +A GD +A ++ + + L +V+L Sbjct: 214 AKLAESRASRIVELAGGLDEVRAEHVGEAFREGDTVATAVLEEIALMLTVWLGNIVDLLE 273 Query: 335 PQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQF 378 P I++G +++ F IS ++ + A+ + I + ++ Sbjct: 274 PDCIVVGGGVAEMMGPFFENISRNLPRWAINQRASEIPLVMARY 317 >UniRef50_B9YHG7 ROK family protein n=2 Tax=Nostocaceae RepID=B9YHG7_ANAAZ Length = 345 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 112/235 (47%), Gaps = 20/235 (8%) Query: 148 SIAITLPGIIDTENGIV---HRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 +I ++ G +D G+V H +P +E++ PL + LE+ VPV + +D + + E Sbjct: 85 AIGVSFGGPVDAATGLVRLSHHVPGWENI---PLKQLLEEEYNVPVSVDNDANVAAVGEH 141 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 FGA +G + + I VG G I +G EIGH VDP G C CG GC Sbjct: 142 RFGAGQGYDSLFYITISTGVGGGWILNGKPWQGAGGMAGEIGHIVVDPTGPVCLCGKRGC 201 Query: 265 LETIAS----VDSILELAQLRLNQSMSSM-------LHGQPL---TVDSLCQAALRGDLL 310 +E +AS + EL + + S +S L G L T + AA GD L Sbjct: 202 VERLASGPYMAQNARELLEKEAHNSPTSTRGEILKYLVGNDLDLITGQIVSAAAAHGDEL 261 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 A++++ +G + + NL NPQ+ ++G ++KA D + + ++ ALP Sbjct: 262 AREVLYKAAWALGVGIGNVANLMNPQRFVLGGGVTKAGDSFWATVRKVAQETALP 316 >UniRef50_B2ULP8 ROK family protein n=2 Tax=Verrucomicrobiaceae RepID=B2ULP8_AKKM8 Length = 319 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 132/265 (49%), Gaps = 5/265 (1%) Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 D++I I QF + + +I + +PG ++ G V+ + +P+ + L+ Sbjct: 44 DQLIEAIAQFVNMLRLNHPEVQAIGMGMPGFVNFYQGTVYTLTNVPGWNNVPVKDMLQAA 103 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 G+PVY+++D + AE GA +G R ++ + + VG+G+I +G LL + S E+ Sbjct: 104 CGLPVYVENDANCMAYAEWKLGAGKGKRHLVCLTLGTGVGSGLIVNGELLRGATCSAGEL 163 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQ-LRLNQSM-SSMLHGQPLTVDSLCQA 303 G T +D G+ + GN G LE I A+ L + + +++ P++++ +A Sbjct: 164 GQTSIDYRGRLGHYGNRGSLEDYVGNREIAADARTLYASHGIDKAIVDCNPISLE---RA 220 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 AL GD +A+ + + + L L NP+ I+IG ++KA +LF + + ++ Q Sbjct: 221 ALAGDEVAEQVWRDLAVKLSCALMNCCYLLNPEAIIIGGGVAKARTLLFQPLQEIMKTQL 280 Query: 364 LPAYSQHISVESTQFSNQGTMAGAA 388 +++ + QF + + GAA Sbjct: 281 AAPLVEYLEILPAQFGTEAGILGAA 305 >UniRef50_D2LWI3 ROK family protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LWI3_BACS4 Length = 314 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 76/271 (28%), Positives = 131/271 (48%), Gaps = 6/271 (2%) Query: 128 IISHIDQFFIR--HQKKLE--RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 II+ + Q + Q +E ++ I + PG +D G + P +PL + LE Sbjct: 40 IITRLKQLIVNVLEQANIEMGQVKGIGVGCPGPLDPWKGEIQSPPNLPGWDHIPLKKILE 99 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + +PV++ +D +A + E F +R +++ + + VG GV+ DG LL + S Sbjct: 100 EEYSLPVFLHNDANAAALGEYTFAYNRNVNNLVYITVSTGVGGGVVADGRLLLGVNGSAA 159 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSM-SSMLHGQ-PLTVDSLC 301 EIGH ++P G C CGN GCLE AS I+ + L + +S+L G+ LT + Sbjct: 160 EIGHMIINPNGNLCSCGNRGCLEAQASGTGIVSKTKALLQTTKEASVLKGKSKLTSKDVF 219 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 AA GD L K II V + L +V+ +NP+ ++ G + +A + + + + Sbjct: 220 VAAENGDALCKRIIEEVQFDLALGLTNIVHAYNPEMVVYGGGVMQAGESFIKPVIEKAEK 279 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKD 392 LP ++ +T+ + + GAA + D Sbjct: 280 MILPGMKGRLTFAATKLGGELGLYGAAALVD 310 >UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus licheniformis RepID=Q65DK2_BACLD Length = 387 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 165/369 (44%), Gaps = 25/369 (6%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +K+ N ++ I + GPVSR LS + L A+++ V +L+ ++ E E+ Sbjct: 9 VKKMNKALIFEQIIENGPVSRAKLSEITGLNKATVSSQVSSLLQKDIIYETGPGESSGGR 68 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 RP + L +A + + + + I +AL DL L+ + + L +D + +I Sbjct: 69 RPVM-LKFNRKAGYAVGVDVGTNYIIVALTDLEGHLIEQFERTLDEEDIQATEEALIELT 127 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 + LT I + +PG++D E +V P + + +P+ E LE+ GVP+ I Sbjct: 128 GLAVDKIPPSPFGLTGIGVCVPGLVDNERHVVF-TP-NKPIHLIPIKEKLEERFGVPILI 185 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +++ +A + E +G + V I+ +G G++ +G L E GH + Sbjct: 186 ENEANAGAVGEKEYGEGGQLEHAVFVSINTGIGLGILMNGKLFRGVQGFSGEAGHMSIHF 245 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CGN GC E AS ++ S + G L +++ + A RGD Sbjct: 246 DGPLCRCGNRGCWELYASEKAVF---------SHYAANSGAQL-YETVKELADRGDPGMM 295 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ--------QAL 364 + G H+G L ++ NP I++ + + ++ +P I D+I++ +AL Sbjct: 296 ETFERFGFHIGIGLLNILKTLNPDTIILRNTIVES----YPSIVDAIKKTIASRSAAEAL 351 Query: 365 PAYSQHISV 373 Y IS Sbjct: 352 SNYHLKIST 360 >UniRef50_C7N9V6 Glucokinase, ROK family n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7N9V6_LEPBD Length = 314 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 112/211 (53%), Gaps = 4/211 (1%) Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 E++ G PV +D++ T+ E GA++G ++V+ + + +G G+I DG L+ + Sbjct: 99 FEKNLGKPVKADNDVNVITLGEMWQGAAQGYKNVLGLAVGTGIGGGIIVDGKLVSGEHGA 158 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH----GQPLTV 297 E+GH +++P GK C CG GC E AS I+ A RL S ++L+ G+ L Sbjct: 159 GGEVGHIKIEPNGKLCGCGQKGCWEAYASATGIIREANSRLAVSKQNLLYEMTKGRELEA 218 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 + AA +GD + DI+ + + ++N+ +P+ +++G ++ A DILF + + Sbjct: 219 KDVFDAAKKGDEFSLDIVDYEAEKLAFGIGNLLNILDPEIVVVGGGVALAGDILFDRVKE 278 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAA 388 ++ A P+ +++ + + N + GAA Sbjct: 279 KLKDVAFPSTLENLKIVAATLGNDAGILGAA 309 >UniRef50_A0P1G6 Probable transcriptional regulator protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1G6_9RHOB Length = 404 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 125/271 (46%), Gaps = 5/271 (1%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 ++ + K N V +I GP+ R ++S + L+ ++ IV E LE+ + E+ ++A Sbjct: 17 NLTRAKTHNHRVVLEIIRTRGPIGRTEISEITSLSRQTVQNIVGE-LESRGIVEMHAQKA 75 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 RG P + + ++ + + L + R + DL +V + + +A RI Sbjct: 76 RGRGHPGMMVKLKPDHAYSLGFHVDRLSVTAIACDLLGSIVWQSAAPMAAATPEAANSRI 135 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDT---ENGIVHRMPFYEDVKEMPLGEALEQH 185 +S ++ F H + L + + PG +T + F + L E L+ Sbjct: 136 LSMVEDFRAAHPAMAKCLFGVGLAAPGPFETGAQTSSGTDATTFSDFGSPENLAE-LQLA 194 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 G+PV +Q+D SA + E ++G R + +GAG + +G L S + EI Sbjct: 195 VGLPVVLQNDASAAALGEHVYGIGRSFNSFAFIQFGMGLGAGFVLNGALYPGASKNAGEI 254 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILE 276 GH +DP G C CGN GCLE S++++ E Sbjct: 255 GHVVIDPNGPACSCGNTGCLERYLSLNALCE 285 >UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZA5_JONDD Length = 425 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 174/374 (46%), Gaps = 13/374 (3%) Query: 25 IDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEA 84 I G +SR+ ++++ L A+++ +VR++L+AHLV E+ E+ G+P V L + A Sbjct: 21 IRAAGTISRVGIAQVTGLTGATVSTVVRKLLDAHLVIEIGRAES-TGGKPRVLLELNPTA 79 Query: 85 WHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQK--- 141 + + + + G I A+ +L+ V ++ + D +I D+ + + Sbjct: 80 RYAVGVHLDHGAITYAVTNLAGAPVARLARPG--PGNASPADVVIRMADEINMLVESIGI 137 Query: 142 KLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTM 201 ++L + + PG + + G+ PF ++ PL L +PV +++D +A + Sbjct: 138 ARDKLLGLGLVSPGPLSSRAGMHLTPPFMRSWEDFPLDTQLADVAQLPVLLENDATAAAI 197 Query: 202 AEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGN 261 E G ++ + + +GAG++ +G S + EIGHT + G C+CG Sbjct: 198 GEYWSGGTQREESFAALYLGTGLGAGIVINGTAYRGTSGNAGEIGHTCANIDGPECWCGA 257 Query: 262 HGCLETIASVDSILELA----QLRLNQSMSSMLHGQPLT--VDSLCQAALRGDLLAKDII 315 GC E +A +++ A ++ ++ ++ P+T ++ +A+ GD ++ ++ Sbjct: 258 RGCFEALAGPAAVVNEAYSDPRIVTAAALDTLGDHTPITQRFAAIARASRMGDTPSRQLL 317 Query: 316 TGVGAHVGRILAIMVNLFNPQK-ILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVE 374 +VG + NL + + +L GS + A+ I P I D++ + + V+ Sbjct: 318 ERSARYVGVAAQSVANLLDVRMLVLTGSSFAAASHIYVPAIRDTLAASFFARDNHAVHVQ 377 Query: 375 STQFSNQGTMAGAA 388 +Q + GAA Sbjct: 378 LSQSAETAPAIGAA 391 >UniRef50_D2QYQ3 ROK family protein n=4 Tax=Planctomycetaceae RepID=D2QYQ3_9PLAN Length = 330 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 125/276 (45%), Gaps = 8/276 (2%) Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++RII I + R T I I PG++D E G++ K + + E LE+ Sbjct: 49 MERIIQTIRDAMQEAGLEGARPTGIGIGCPGLVDIERGVIVDSANL-GWKNVHIKEQLEE 107 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 PV I +D+ A E FGA++ AR VI V +G G + G +L S S E Sbjct: 108 VFACPVVILNDVDAGVFGEYRFGAAKNARCVIGVFPGTGIGGGCVYQGQILRGKSLSCFE 167 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIAS-VDSILELAQLRLNQSMSSMLHGQPLTVDS---- 299 IGH V+P G C CG +GCLET AS + A ++L + Sbjct: 168 IGHMLVNPAGLPCGCGRNGCLETEASRLAISSAAAMAAFRGEAPNLLAAAGTDLSDIRSG 227 Query: 300 -LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA-ADILFPVISD 357 L A GD++ + I+ +G+ + + NL P +++G L +A D+ + D Sbjct: 228 VLADAIKAGDVVIERIVQRAAGLIGQAVGDLANLLAPDVVVLGGGLVEAMPDLFSKTVDD 287 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 + R++A+ Y + + V + + + GAA +A Sbjct: 288 AARRRAVAPYVKGMKVVVARLGDDAVVRGAAAWAEA 323 >UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida fusca YX RepID=Q47PH9_THEFY Length = 417 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 98/417 (23%), Positives = 179/417 (42%), Gaps = 32/417 (7%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 A P +++TN G V R I P SR ++ L A+++ +V E+++ LV E Sbjct: 4 ATEGPAGFQAVRETNLGIVLRTIRTSAPCSRAVVAASTGLTKATVSSLVAELIDRGLVCE 63 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRIS-----RGEIFLALRDLSSKLVVEESQELA 117 + GRP + L + L L ++ + L R++ ++ V +++ Sbjct: 64 TGLVNERRVGRPGMMLTINGSTLVALGLEVNVDYLALAALDLLEREVLTRHVAFDARAAG 123 Query: 118 LKDDLPLLDRII-SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEM 176 ++ L ++ + +R + L +++ +P ++D +G V P + Sbjct: 124 PEECAKQLKTLLLETVADPLLRDRP----LLGVSVAIPALVDVSSGTVTNAPNL-GWRNF 178 Query: 177 PLGEALEQH------TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVIT 230 PL + L + G PV + +D + +AE G D++ + + +GAGV+ Sbjct: 179 PLQQRLTELLADTPLAGAPVRVDNDANLGAVAEYRGGHLARTMDLVYLTGEVGIGAGVLM 238 Query: 231 DGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML 290 +G L S E+GH + G C CG GCLE +A +DSIL +++ ++ Sbjct: 239 NGEPLRGASGFAGEVGHIPLLKDGPACACGQDGCLEALAGLDSILR-------RAVPDLV 291 Query: 291 HGQPL---TVDSLCQAALR----GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP 343 P+ V+SL +R GD A + G +GR A +VNL NP I++G Sbjct: 292 PEGPVRGSVVESLVAETVRRAESGDATAVQALEDAGEWLGRAAATLVNLLNPSAIILGGY 351 Query: 344 LSKAADILFPVISDSIRQQALPAYSQHISVESTQFS-NQGTMAGAALVKDAMYNGSL 399 + L P +++ + S + +E + + GA + DA+ G L Sbjct: 352 FVPLSPWLLPSCREAMAAYSFAPNSGNCRIEPSTLGLSAAARGGAMALIDALDTGLL 408 >UniRef50_C2CVT4 Transcriptional regulator n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CVT4_GARVA Length = 379 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 164/362 (45%), Gaps = 39/362 (10%) Query: 31 VSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSL 90 +SR L R +L+ ASI+ +V EMLE H++ E + RG+ L V+ W+ +++ Sbjct: 44 LSRAMLVRKTKLSKASISTVVYEMLEDHILVESGQESKIERGKKGTLLEVDANYWNIITI 103 Query: 91 RISRGEIFL-ALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSI 149 +S+ + A+ +L ++ + E++L I + + I + + I Sbjct: 104 DLSQPCLIQGAVVNLCGDIL--KRSEISLYKSTDANCEKIIEVCKTLINNSNN--HILGI 159 Query: 150 AITLPGIIDTENGIVHRMPF-YEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGA 208 I +PGI+D E +V +E++ + E L +H P+ + HD ++ +AE FG Sbjct: 160 GIAVPGIVDDEGRVVRSSNLQWENIN---IKEELIKHFNCPIIVDHDTNSALLAERFFG- 215 Query: 209 SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI 268 G + I + + VGA ++ + ++ ++S EIGH VDP G C CG GCLET Sbjct: 216 -NGVPNTIFIQLSLGVGASILINDAIITGINNSAGEIGHITVDPQGPDCSCGKKGCLETY 274 Query: 269 ASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAI 328 S ++ LH + T + +DI+ G ++G+ L Sbjct: 275 ISAET----------------LHRKMFT----------SNRKPEDILAEAGNYLGKALTT 308 Query: 329 MVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH-ISVESTQFSNQGTMAGA 387 +NL + ++I P S + +F ++ Q+ P +H +V +N T+ G Sbjct: 309 TINLLDLTDVVIYGP-SDIVNKVFISSTEKAIQEYGPYSPKHPCTVRRCTCNNDITLIGE 367 Query: 388 AL 389 + Sbjct: 368 CI 369 >UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus RepID=C8ZX67_ENTGA Length = 388 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/380 (21%), Positives = 180/380 (47%), Gaps = 20/380 (5%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN-R 71 I++ N AV + I +SR ++S L L AS+++I+++++E V+E+ I ++ + Sbjct: 8 IREQNEAAVLKTIIDNEHISRAEVSNLTNLNKASVSQIMKKLIETDFVKEVGIGDSTSIG 67 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSS-KLVVEESQELALKDDLPLLDRIIS 130 GR + L ++ ++ I + L ++ ++ + E Q++ + D + I S Sbjct: 68 GRKPIQLQFNHQSSLAITFDIGYNYVNGMLSYINGQRIAILEKQDILITKD-NVFTTIDS 126 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + +F + L I + + GI++ EN + P+Y D++ + L L Q V Sbjct: 127 IMAEFTPKMPPTTHGLVGICLAIHGIVNQEN--ITFTPYY-DLEHIDLVSPLSQKYHTAV 183 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 YI+++ + + E F S + +++ V I +G G+I +G L + E+GH+ + Sbjct: 184 YIENEANLTALGEYCF--SSDSTNLLSVSIHSGIGVGIIVNGRLQTGTHGTAGEVGHSTL 241 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 P+G C CGN GCLE AS + + + S + + D +A G+ Sbjct: 242 FPHGNLCPCGNRGCLEQYASNKVLFD--------TYSHYTKKELVNSDIFAKAIRSGEKS 293 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 A ++ + L ++ F+P+++ I S + + P ++ ++Q+ ++Q+ Sbjct: 294 ALELAQQNVEFLSIGLNNVITFFDPEEVYINSSVYRK----IPQLTKDLQQKLTSQFTQN 349 Query: 371 ISVESTQFSNQGTMAGAALV 390 +++++ Q + G ++ Sbjct: 350 TKIKNSRLGEQAPLFGGNVL 369 >UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C6B3W7_RHILS Length = 405 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 12/314 (3%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 GP SR D++ + L+PA++T +V ++LE +V E + G GR + + + E + Sbjct: 26 GPRSRADIATVIGLSPAAVTFVVADLLEEGIVIEGKTVP-GLTGRRPIPVDINYEHALAV 84 Query: 89 SLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTS 148 ++ + DL++ V L D + D + S + + + +L Sbjct: 85 GFKLMVDSVECVATDLATNPVAAMRVSLGGHDPDKVADLLASTVPELVKLAGRPNAKLAG 144 Query: 149 IAITLPGIIDTE-NGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFG 207 I I++PG+I+ E V F D +PL + VPV+++ D +A+ +A+ LFG Sbjct: 145 IGISMPGVINHEQTACVRSYRFKWD--NVPLASLVASRVHVPVWLEDDTNAYAIAQQLFG 202 Query: 208 ASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLET 267 R R++ + + + ++ DG L + + + GHT + G+ C CG GCL Sbjct: 203 LGRQHRNMAVLAVGVGISCALVIDGKLYRGANGAAGKFGHTLYEENGRLCECGKRGCLMA 262 Query: 268 IASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILA 327 S E++ LR + + + L + L A GD A ++ G +G LA Sbjct: 263 YHS-----EISMLRRWREATGR---EELGLPELSAALASGDTTALALVADSGRGIGTALA 314 Query: 328 IMVNLFNPQKILIG 341 +VN+ +P+ I+ G Sbjct: 315 NLVNITDPEVIVAG 328 >UniRef50_D1AW58 ROK family protein n=7 Tax=Fusobacteriaceae RepID=D1AW58_STRM9 Length = 317 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 77/317 (24%), Positives = 146/317 (46%), Gaps = 18/317 (5%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEES-QELALKDDLPLLDRIISHIDQFFIRHQKKLE 144 +++ + + + + + D ++ EES + + + RI + I + F + + Sbjct: 3 YFVGVDLGGTNVKIGILDSEYNILTEESIKTESKRGPEDTFTRIWNKIQELFTKISVDIS 62 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 L I +PG + IV + + E E+ +G V +++D+ A + E Sbjct: 63 ELEGIGFGIPGPV-VNKSIVKIAANFSWGNDFNAKELFERISGKTVIVENDVRAIALGEN 121 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 LFGAS+G ++ I + I + AG+I +G L+ + EIGH VD G +C CG GC Sbjct: 122 LFGASKGYKNSIILPIGTGIAAGMIINGELISGNDGAAGEIGHISVDLNGYKCGCGLTGC 181 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHG------QPLTVDSLCQAALRGDLLAKDIITGV 318 LE S I+ L Q +L+ + L + A +GD +A+ I+ Sbjct: 182 LELFTSAKGIVREGIKVLKQEKKGILYETFKDDFEKLEAFHIFLEARKGDEVAEIIVDNF 241 Query: 319 GAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS-----V 373 + + +++NL NP+ I+I L+K++D++ + ++ LP Y+ ++S V Sbjct: 242 CNKLAYGIGVLINLVNPEIIVIAGGLAKSSDLIIAGV-----KKHLPKYALNMSIDIPIV 296 Query: 374 ESTQFSNQGTMAGAALV 390 +S + G A+L+ Sbjct: 297 KSELLDSAGVKGAASLI 313 >UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP1_ALIAD Length = 409 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 89/390 (22%), Positives = 174/390 (44%), Gaps = 19/390 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR- 71 +K+ N V I P+SR +S L A+++ + E++ LV LE+ + +R Sbjct: 21 MKEINKSIVLNRIRFHSPISRSQISSETGLNKATVSALTDELIRDGLV--LEVGQGRSRV 78 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL---PLLDRI 128 GR + L+ A + + + + +A+ D +++ + +E L +L +L+R+ Sbjct: 79 GRRPIMLLFNASAGSVIGVELGVEYVRVAITDFAARAL--SVREEPLPRNLGAEEVLERL 136 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 + I Q + + I + +PG++D G+V R P + + +PL +E G Sbjct: 137 RASIAQALAEAPESRYGVIGIGVGVPGLVDFARGVVLRAPHIK-WENIPLKAMMESWFGK 195 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PV + ++ +A + E L+GA+ ++ + +G G++ L+ E GH Sbjct: 196 PVLVDNEANAGALGEKLYGAATHVSSLVYISAGTGIGTGIVIGDELIRGADGVAGEFGHM 255 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 +D +G+ C CGN GC E AS +++ + + L G+ L D + D Sbjct: 256 SIDLHGETCPCGNVGCWELYASERALV---------AAYAKLTGEELDFDGVLARFRASD 306 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 A VG ++G +VN NP +++G+ L++ ++ + +I + L + Sbjct: 307 PAALQAFQTVGRYLGAGAVNLVNGLNPAMMILGNRLAEGGRMVTDAMQQAILSRCLVSSY 366 Query: 369 QHISVESTQFSNQGTMAG-AALVKDAMYNG 397 + V+ + G AALV + G Sbjct: 367 AKVVVQVSALGRDACAIGSAALVLHDFFAG 396 >UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH51_KOSOT Length = 408 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 83/337 (24%), Positives = 158/337 (46%), Gaps = 17/337 (5%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 IK+ N + + I + + R +++ L+PA++TKI E++ +V E E+ G Sbjct: 17 IKEINEKLILKTIYENKKIDRASIAKFTGLSPAAVTKITAELINRGMVLEAGSAESSG-G 75 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R + L + + +L ++I G + L + D + +V ES + P I++ I Sbjct: 76 RKPILLSLNPKFGQFLGVKIGVGYVELVITDFTCTIV--ESARCDTESSDP--GTIVNVI 131 Query: 133 DQFFIR-HQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 + + Q+K L I I + G++D++ GIV R F +++P+ L++ V Sbjct: 132 KNCWEKCRQEKQSILLGIGIAVSGVVDSKEGIV-RDSFLLGWRDVPIASLLKEVFKCEVL 190 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 + +D+ ++ M+ G ++ + + + + +G +I DG + H + EIGH V Sbjct: 191 VMNDVDSFAMSHLWLGKAKDHSNTVVITLGVGIGGALIIDGKI-HNAKGGVGEIGHMTVV 249 Query: 252 PYGKRCYCGNHGCLETIAS-------VDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 G +C CG++GCLE AS + SI E +L+ + S+ + ++ L +A Sbjct: 250 KDGAKCTCGSNGCLEAEASFGALAKKISSITESKKLK--ELYKSVKQSESSEIEYLREAL 307 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIG 341 R + VG L ++N+ P +LIG Sbjct: 308 KRDRKAFNHVFEEYAVLVGIALKNIINMLAPDYLLIG 344 >UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ATI4_STRRD Length = 457 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 100/379 (26%), Positives = 165/379 (43%), Gaps = 32/379 (8%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 QP +++TN V R + G SR D++ L A+++ ++ E+LE LV+E+ I Sbjct: 16 QPAGHASLRRTNLSLVLRHLRDHGSSSRADIAEATGLHRATVSNLMAELLERRLVREVGI 75 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVE-----ESQELALKD 120 + AG GRP + ++ L L I+ + + DL +++VE ++ Sbjct: 76 EHAGTVGRPRRAVALDGAHVGVLGLEINVDYVAVHGTDLGGRVLVERRVGFDAMGSGTNH 135 Query: 121 DLPLLDRIISH-IDQF---------------------FIRHQKKLERLTSIAITLPGIID 158 L L R+ ID+ I R+ I + +PG++D Sbjct: 136 SLRELGRVARQAIDELTRAGAGPSGLGPGDLAAAGASGIAAAGGGIRVAGIGVAVPGLVD 195 Query: 159 TENGIVHRMPFYEDVKEMPLGEALEQHTG---VPVYIQHDISAWTMAEALFGASRGARDV 215 +G+V P +++ L L G PV + +D + +AE G + G D+ Sbjct: 196 VGHGVVALAPNL-GWRDVSLASRLSVALGDVRAPVTVDNDANLAALAEYTSGVAAGTADM 254 Query: 216 IQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSIL 275 + + + VG G+I G LL E+GH VDP G RC CG GC ET + +++ Sbjct: 255 VYLTGEVGVGGGIIVGGRLLRGADGFSGEVGHMPVDPGGSRCGCGRSGCWETKVGLAALV 314 Query: 276 ELAQLRLNQSMSSMLHGQP-LTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN 334 +A M + P V + + GD L + VG +G +I+VNLFN Sbjct: 315 RMATPDQAYGMGTTPVPDPEERVAEIARGLAGGDPLMLAAVAEVGRWLGLGGSILVNLFN 374 Query: 335 PQKILIGSPLSKAADILFP 353 P+ I++G + A L P Sbjct: 375 PRVIVVGGYFATLARWLLP 393 >UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID=C6WCK9_ACTMD Length = 435 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 93/395 (23%), Positives = 168/395 (42%), Gaps = 19/395 (4%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 + +++ N A+ + GP+SR +L L+ A+++ +++ LV E+ Sbjct: 18 VRDLRRHNRSALLSTLYFEGPLSRQELVARTGLSAATVSTATAGLVDERLVVGAGTVES- 76 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRII 129 + GRP L V H + + + + + L DL+ + + +L D L + I Sbjct: 77 DGGRPRSLLRVNPGYGHVVGVDVGETGVAVELFDLALRRIAALDHDLPPTDPLAVGALIA 136 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENG------IVHRMPFYEDVKEMPLGEALE 183 + + + + + I +PG ++ G +VH +PL E + Sbjct: 137 AAVPEVIALAGADQGSVLGVGIGVPGEVERRGGAWGAATLVHAQTL--GWSGVPLAELVR 194 Query: 184 QH-TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 T +P+++++ AE FGA RG+R V+ ++ VGA V+ DG + +SS Sbjct: 195 AGGTTLPLFVENGAKTQGQAEMWFGAGRGSRHVVVALLASGVGAAVVADGAVQRGSTSSA 254 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRL--------NQSMSSMLHGQP 294 E GHT V G+RC CG HGCLE ++LE + + + ++ Sbjct: 255 GEWGHTTVVHGGRRCRCGAHGCLEAYVGAGAVLERYRGLGGELGEGDERAAFAELVALAG 314 Query: 295 LTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA-ADILFP 353 G LA ++ ++G +A +VNLFNP+ I++G A + P Sbjct: 315 GGTLGGGSPPAGGAQLATRVLEEAVGYLGAGIATLVNLFNPELIVLGGWAGAALGEGWLP 374 Query: 354 VISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA 388 I + R+ AL + +E+ + GAA Sbjct: 375 SIVAATREHALRHPFARVRLEAGRLGPDAVAVGAA 409 >UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDL5_9FIRM Length = 380 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 84/366 (22%), Positives = 164/366 (44%), Gaps = 20/366 (5%) Query: 31 VSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSL 90 VSR +++R+ ++P S T+IV + E LV+++ G GR AV L VE A++ + L Sbjct: 14 VSRSEIARMTGMSPTSATRIVGSLEECGLVRDMAAVSNGV-GRKAVMLDVEENAFYCIGL 72 Query: 91 RISRGEIFLALRDLSSKLVVEESQELALKDDLP--LLDRIISHIDQFFIRHQKKLERLTS 148 IS + L + + ++V + P +++ + I+ + +E++ + Sbjct: 73 DISETNLKLCILNFGGQIVARGAAPAPGDSFQPEEVVEIFYRMYQRLAIQAKIPMEKVAA 132 Query: 149 IAITLPGIIDTENGIVHRMPFYEDV---KEMPLGEALEQHTGVPVYIQHDISAWTMAEAL 205 I G +D++ G V + D+ +P+G+ +E G+P Y+ +D+ + + Sbjct: 133 IGAGAVGTVDSKTGEV----IFGDLIRWSHVPIGQMIEARFGLPTYVDNDVKCAIIGDCS 188 Query: 206 FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY-GKRCYCGNHGC 264 +GA DV+ + VG VI G L+ +S EIGHT VD G+ C CG GC Sbjct: 189 TPPIKGADDVVLLSFGCGVGGAVIHRGRLVRGSINSAGEIGHTIVDYTDGRLCSCGRRGC 248 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGR 324 + D I++ A + +SS+ + + A R + A+ ++ + ++ Sbjct: 249 AAAYLTKDQIIQQAA-KSCPGISSL--------EEIMAAWERREPWAEALLDRISTYMAI 299 Query: 325 ILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTM 384 ++ NP+ +++G L + LF ++ + P + + T Sbjct: 300 TVSNAACFLNPRNMILGGKLMNESPFLFDLVLEKYSAMMYPPLRGATTFIRSPLGTDATC 359 Query: 385 AGAALV 390 G A++ Sbjct: 360 VGGAMI 365 >UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5GK61_9ACTO Length = 402 Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 101/380 (26%), Positives = 171/380 (45%), Gaps = 15/380 (3%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVV 80 V LI GP+SR++L + L +I+ IVR ++E +V+E A RG+P LV+ Sbjct: 11 VVDLIRSSGPISRVELVKSTGLTQPTISNIVRRLIEDGVVRETGDTVA-TRGKPRSLLVI 69 Query: 81 ETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQ 140 + A + + + ++ + + D V D + ++ + + + Sbjct: 70 NSHAAYGIGIHLATDALTCVVTDTRGGTVGRLLVAAPPSGDPEAVTEALAGLYRDVVAGL 129 Query: 141 KKLER-LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAW 199 R + +A+ PG +D G +P + L AL GVPV + D SA Sbjct: 130 GLPARGVAGLAVVGPGPVDVAQGSFLALPGRSPATGLALAPALGGALGVPVLVDSDASAA 189 Query: 200 TMAEALFG--ASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRC 257 T+ E +G SR AR + ++ +G+GV+ DG L SS+ ++GHT V G+ C Sbjct: 190 TVGE-FWGRQVSR-ARTFGCLYMNSGIGSGVVLDGALHRGASSNAGKLGHTAVVRGGREC 247 Query: 258 YCGNHGCLETIASVDSILELAQLRLNQSMSSMLH---GQPL--TVDSLCQAALRGDLLAK 312 CGN GCLE A+ ++E A R ++ L G P+ D L +AAL GD A+ Sbjct: 248 PCGNRGCLEQYAAPRVLVERA--RALPGLARRLRIAEGDPVDRAFDVLARAALYGDEAAR 305 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF-PVISDSIRQQALPAYSQHI 371 ++ + + NL++ +++ P AA L+ I + A + Sbjct: 306 ALLDESAELLAEAAVTLTNLWDLDTLVLAGPGFAAAGSLYVSAIRARLAASAFTRGVHEV 365 Query: 372 SVE-STQFSNQGTMAGAALV 390 +V+ S+ + + GAALV Sbjct: 366 TVDLSSNPRDAAAIGGAALV 385 >UniRef50_UPI00017890E0 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017890E0 Length = 391 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 97/398 (24%), Positives = 179/398 (44%), Gaps = 41/398 (10%) Query: 11 DQIKQT--------NAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV-- 60 D +KQT N V LI GP+SR++L+ L+ ++T IV +L+ ++ Sbjct: 3 DSVKQTSHMLLKSINQQKVLFLIYSEGPISRVELAEKTGLSRQTVTNIVNRLLKEKIIVT 62 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRIS----RGEIFLALRDLSSKLVVEESQEL 116 EL EAG+ GR VGL + + ++ + L ++ RG++F +L + V + Sbjct: 63 GELIDLEAGS-GRKRVGLHINSGHFYAIGLELAGKYIRGKVF----NLRQEAVASAERTS 117 Query: 117 ALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEM 176 + +L +++ + + ++ I I++ G++D+++GIV R P V + Sbjct: 118 NKYGSIDVLMQLLHEVIDELLTQVPNTSKVKGIGISMQGLVDSQHGIVLRTPGI-GVHRL 176 Query: 177 PLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLH 236 PL + LE +PVYI++D++ ++ E + G + + + I + D+ G ++ D ++ Sbjct: 177 PLKQLLEDKYDIPVYIENDVNLLSVNENMNGCLKDSNNNITIKFDYGTGGAIVHDKQIIA 236 Query: 237 AGSSSLVEIGHTQVDPYGKR---CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQ 293 S E GH + YG+ C+CG GCL T+AS + + L + + G Sbjct: 237 GSSFVAGEFGHYK-GFYGEDAYPCHCGRSGCLTTLASSSGLSVSIKCTLEEFAEGIRTGD 295 Query: 294 PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILI-GSPLSKAADILF 352 P + L + I+ G+ V I + NP +L+ G + + +F Sbjct: 296 PKFLG-----------LYEKIVDGIAIAVTNI----ITFINPDSLLMTGRVIPTISPEMF 340 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 I + Q LP ++ + Q T A LV Sbjct: 341 NEIKARVMHQ-LPVTVNNVQLIHLQDKPDETKLAAGLV 377 >UniRef50_C8SG46 ROK family protein n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SG46_9RHIZ Length = 401 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 94/364 (25%), Positives = 172/364 (47%), Gaps = 33/364 (9%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR--GRPAVGL 78 + R + + G +S ++ + LA ++++ + + ++ +V E G R GRPA L Sbjct: 22 IVRCLSERGVLSASQITHVTGLARSTVSTALNGLRKSGMVIEAPTSRDGIRSIGRPAAAL 81 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP--LLDRIISHIDQFF 136 + A + + + E+ L + D+S ++ E++ +AL D P S I Q + Sbjct: 82 TLNPTAGTCVGIHLGLQEMRLIVADVSHSVIAEQTIPMAL-DYQPQQAAQMAKSAIAQSY 140 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHR---MPFYEDVK-EMPLGEALEQHTGVPVYI 192 + L + +++ G + + +G+V R +P + V G LE+ P++ Sbjct: 141 EENGLPAAGLLGVGVSVSGPV-SRDGVVLRASIVPTWAGVNIRDVFGPVLER----PIFA 195 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 ++ + +AE ++GA+ G D + ID VG ++ G L+ + E GH +DP Sbjct: 196 DNESNCSAIAELMWGAAIGQDDFVLFKIDLGVGGAIVQHGRLVTGIAGGAGEFGHISIDP 255 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CGN GCLE AS LE +S ++ Q +T+D + A +GD+ A Sbjct: 256 GGDLCRCGNRGCLELYASFARPLE--------QISRIVRRQ-VTMDDVITMAEQGDIRAL 306 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF-PVISDSIRQQALPAYSQHI 371 +I GR L ++ ++ NP I+IG ++ A DIL P+I+ +Y +H Sbjct: 307 RMIEDTAEIAGRGLGLIGSVLNPPLIIIGGHMALAGDILLTPLIA---------SYERHT 357 Query: 372 SVES 375 ++S Sbjct: 358 LIKS 361 >UniRef50_D2BA00 ROK family protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BA00_STRRD Length = 392 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 89/383 (23%), Positives = 174/383 (45%), Gaps = 20/383 (5%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI--KE 67 + ++++ + A ++ G +SR +L++ L+ ++ I+ E++E V E+E E Sbjct: 8 LQRLRRVHEDAAVAVLRSAGALSRAELTQRTGLSRTTLFSIISELIERDAVVEVEALPAE 67 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLD 126 RGRPA + + A + L + R + LA+ +++ +++ ++ A D + Sbjct: 68 PRGRGRPAALIALNPSAGLLIGLDVGRRRVRLAIANVAHEIIATGMADIPAGADAPAQAE 127 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 + + + H +L L +I + L GI+D + +P + P+ L + Sbjct: 128 AAVRLVRRVGEEHGIRLGALEAIGLGLVGIVDDPSLPASAVP----AQHAPVARRLAEEF 183 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 GV V + ++ +AE +GA+R D++ V VG G + G LL + E+G Sbjct: 184 GVRVAVDNNARLAALAENTWGAARSVGDLVYVRWSVGVGGGFVVGGRLLRGAHGAAGELG 243 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLR--LNQSMSSMLHGQPLTVDSLCQAA 304 H +DP G C+CG GCLE ++LE+ R + + +++ V +C+ Sbjct: 244 HVSLDPEGPPCHCGGRGCLERRIGSQALLEVCAARGIVLTGLDALVAAAQDRVPGVCE-- 301 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 +I+ A +GRILA V +P+++++G + ++ I ++I AL Sbjct: 302 ---------VISAAAADLGRILADTVVQLDPERVVVGGEFASLGSLVLDPIREAIDGLAL 352 Query: 365 PAYSQHISVESTQFSNQGTMAGA 387 P + I V + GA Sbjct: 353 PKIRRRIGVTPADLGVNASAMGA 375 >UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXN7_PAESJ Length = 387 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 90/340 (26%), Positives = 164/340 (48%), Gaps = 18/340 (5%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G IK+ N + + I + G +SR D+S++ L A+++ V ++L+ LV E EI E Sbjct: 4 GDASYIKKMNRSLILKEILKEGMLSRADVSKVTALTRATVSGQVADLLDEELVIETEI-E 62 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL---ALKDDLPL 124 GR + L + EA + + + + +I A+ DL LV+ ++ +L A D L L Sbjct: 63 YNQVGRKPIMLSINAEAGYAIGIDLEYDQISFAISDLKGSLVLTDTIKLQSHAYADILSL 122 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L I H + F + + I I + G++ T+ ++H +P + ++PL LE Sbjct: 123 LTGQIKHYQERFAASRYGI---IGIVIAIHGLVSTDE-VIHYIPSF-GWHDVPLKSDLEN 177 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 G+ V ++++ + AE +F D+I V + +G G++ + E Sbjct: 178 ALGLQVKLENNANLSAFAERVF-FHHETDDLISVTLYSGIGMGMMINHSFFRGQDGFAGE 236 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGH V P G C CGN GC E AS S+ +L LR + + + + Q + + +A Sbjct: 237 IGHMIVVPGGLPCNCGNKGCWEKYASETSVFQL--LRAKKPDADITYAQ---IGNWIEAK 291 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPL 344 + A ++I ++ L ++N++NP+ +++ S L Sbjct: 292 ---EPDATELIEQFIYYLSIGLNNIINIYNPEVVVLDSEL 328 >UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TGR1_9MICO Length = 421 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 94/405 (23%), Positives = 185/405 (45%), Gaps = 23/405 (5%) Query: 6 QPGHIDQ--IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + G +DQ ++ N G + R + G SR L+ L+ A+ + ++ ++ E LV+E Sbjct: 18 RSGRLDQAQMRAANMGLILRQLQLHGGRSRAGLATETGLSKATTSSLIADLAERGLVREG 77 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVE-----ESQELAL 118 EI AG+ GRP + + ++ L L IS + + DL+ ++ E + ELA+ Sbjct: 78 EIHRAGSVGRPGLTVNLDGRRVAGLGLEISIDYVAVTAVDLTGNVIRESITPMDVPELAV 137 Query: 119 KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 + +LDR+ + + + + PG+ID + GIV P + + L Sbjct: 138 E---VVLDRVAGIAQRMLESLRSAGHIVVGFTVAPPGVIDYDAGIVRFAPNL-GWRSVAL 193 Query: 179 GEALEQHTG--VP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLL 235 L + G P +++++D +AE A +D++ + + VGAG+I +G L+ Sbjct: 194 AAGLSERIGPECPEIHLENDAKLAAVAEYGAYADSEVQDLVYLSGEVGVGAGIIAEGRLV 253 Query: 236 HAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL 295 S E+GH + P C CG GC E + + LRL + ++H Sbjct: 254 RGWSGFSGEVGHLALGPSELECSCGRRGCWELVVGLHHF-----LRLAAPVGDVVHDSRR 308 Query: 296 TVDS----LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADIL 351 ++D L + A GD + + + + R L+++V++ NP++I++G + + L Sbjct: 309 SMDDRLEILRERAASGDERTLEALAAIARDLIRGLSVLVDVLNPRRIVLGGYFAPFGEQL 368 Query: 352 FPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYN 396 + ++ ++ + A S+ + S + + GA +A++ Sbjct: 369 LAPVKSALDERRMDAGSEVVVAVSALGLSAASRGGALAALEAVFE 413 >UniRef50_A5G397 ROK family protein n=7 Tax=Geobacter RepID=A5G397_GEOUR Length = 328 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 4/268 (1%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 L R S I + + +I +PG+I + +GI++ ++ + L E + Sbjct: 48 FLKRFFSVIASLRTWADSSGKEIVAIGAGVPGLI-SNDGIIYSSVNLLPLEGLNLRELIT 106 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G+P + +D +A E +GA R + + + VG+G++ + L Sbjct: 107 AAAGLPAIVVNDANASAWGEKCYGAGRSMNSFLMLTLGTGVGSGLVLNDKLWTGCDGVAG 166 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQP---LTVDSL 300 E GH V+P GK C CGNHGCLE AS +++ A + L P L + L Sbjct: 167 EFGHVTVEPDGKPCPCGNHGCLEQYASATALVAEAGEAIQAGGGGALANVPASMLNAEVL 226 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 AA GD LAK I G ++G A VNL N + I++G ++ + D++ + I Sbjct: 227 ADAAHGGDALAKAIFENAGRYLGIASAAAVNLLNLEGIILGGGVAASYDLIVEPMRREIL 286 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAA 388 +A ++ + + + + + GAA Sbjct: 287 ARAFAIPARRVRLVRAELEDDAGILGAA 314 >UniRef50_B2J5U6 ROK family protein n=5 Tax=Cyanobacteria RepID=B2J5U6_NOSP7 Length = 319 Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 110/236 (46%), Gaps = 20/236 (8%) Query: 147 TSIAITLPGIIDTENGIV---HRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAE 203 +I ++ G +D G V H + +E++ PL LE+ GV V + +D + + E Sbjct: 61 AAIGVSFGGPVDASTGTVRLSHHVAGWENI---PLKGLLEEEFGVSVGVDNDANVAALGE 117 Query: 204 ALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHG 263 FGA +G + + + VG G I +G EIGH VDP G C CG G Sbjct: 118 HRFGAGQGYDSLFYITVSTGVGGGWILNGQPWRGAGGMAGEIGHIVVDPSGPVCLCGKRG 177 Query: 264 CLETIAS-------VDSILE-LAQLRLNQSMSSMLHGQP------LTVDSLCQAALRGDL 309 C+E +AS V ILE Q R +L G LT + +AA GD Sbjct: 178 CVERLASGPYMAQNVREILENEPQRRGGFRDGEILRGLAGDDLTLLTGQLVSEAAAAGDD 237 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 LAK+++ +G + + NL NPQ+ ++G ++KA + + V+ R+ ALP Sbjct: 238 LAKEVLHKAAWALGVGIGNVANLMNPQRFVLGGGVTKAGEDFWRVVRQVARETALP 293 >UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDD5_THET1 Length = 321 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 129/248 (52%), Gaps = 5/248 (2%) Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 R+ +I + PG I+++ G+V P +PL + +E+ TG+P ++ +D + + E Sbjct: 61 RIDAIGVGAPGPINSKEGVVSNPPNLPGWVNVPLAKLIEEKTGIPTFLGNDANLAALGEF 120 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 +G+ + + +I + + VG G+I DG LL + + E+GH V P G +C CG +G Sbjct: 121 TYGSGKYVQHLIYITVSTGVGGGIIIDGQLLEGHNGAAGEVGHMVVQPGGPKCSCGGYGH 180 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC-----QAALRGDLLAKDIITGVG 319 LE ++S +I + A+ + + +++ +VD + +AA +GD LA ++ G Sbjct: 181 LEALSSGTAIAKRAREAASLNKDTIMIELAGSVDKINAKIVDEAAKKGDPLALKLLEQAG 240 Query: 320 AHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFS 379 +G L ++++FNPQ I IG +S+A ++L + + +P + Q + + Sbjct: 241 QWLGYALINLIHIFNPQMISIGGGVSEAGELLLGPARKVVFEGLMPVFKQDLQIVKASLG 300 Query: 380 NQGTMAGA 387 +AGA Sbjct: 301 GDVGLAGA 308 >UniRef50_A7BBT5 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BBT5_9ACTO Length = 378 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 170/362 (46%), Gaps = 17/362 (4%) Query: 29 GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYL 88 GP+ R +L+R LAPA++T+I E++ + L+ E+ GRP + L V + ++L Sbjct: 23 GPLGRAELARRLGLAPATLTRISTELIASGLLAEVPEATQRTSGRPTIPLDVVPSSHYFL 82 Query: 89 SLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTS 148 ++++ + + DL K +S + L P+ R+I I R + R+ + Sbjct: 83 GIKLTDSALDATVIDL--KATPRDSYRVPLDSLTPI--RVIRAIADLAHRARSAY-RIDA 137 Query: 149 IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGA 208 I I + GI++ +G V PF + ++PL + + T +P ++ +D+SA+T + FG+ Sbjct: 138 IGIAVGGIVNA-DGTVESAPFLK-WHDVPLASLVSEATRLPAFVANDLSAYTQIQHWFGS 195 Query: 209 SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI 268 G + + + VG G + +G L S + +GH +DP G C G+ GC E + Sbjct: 196 GTGHSNFAVITVGVGVGYGCVANGARLENEDSGIGLVGHWPLDPLGPICSQGHRGCAEAM 255 Query: 269 ASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAI 328 + +I A S G+PL + + A + I+ G +GR++ + Sbjct: 256 LTTPAICRDA---------SAAVGRPLEWNDVITLASEKHPAVEAILAASGRALGRLIGL 306 Query: 329 MVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA 388 + +L P+ ++IG A + + + I + P + I V + SN+ GA Sbjct: 307 VASLTAPELVIIGGEGVALASLSGDAVREGIGEVRDP-RATSIRVTLSDGSNEAWSRGAG 365 Query: 389 LV 390 ++ Sbjct: 366 VI 367 >UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A9_SOLUE Length = 387 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 92/356 (25%), Positives = 167/356 (46%), Gaps = 17/356 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 ++ N V L+ P+SR DL+R + L ++I+ IV +++E + V E RG Sbjct: 16 VRDINRRIVLNLVRTRQPISRADLARASGLQRSTISLIVEQLIEENWVLEGPTGRL-PRG 74 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R L + + + + I + +AL D + K +E L L ++I+ I Sbjct: 75 RRPTFLRLNDDR-VIIGVDIRPIQTTVALADANGKFTSQEVMSTPGDPKLAL-TQLIAAI 132 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVK--EMPLGEALEQHTGVPV 190 + I+ + + + I I+LPG D + +R+ F ++K ++ + + + + TG+ V Sbjct: 133 KR--IKSTCRGKMIEGIGISLPGRFDHSS---NRLVFAPNLKWTDIDIRDPIVEQTGLDV 187 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 +++ +A +AE F R+++ V + +G GV+ +G L+ S E GH + Sbjct: 188 ELENAANACVLAEVWFDRVHECRNLVVVTVSEGIGTGVLANGALVRGLSGMAGEFGHVPL 247 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 DP G C CG+ GC E AS A LR S G L+ L A +GD Sbjct: 248 DPTGPTCGCGSRGCWEIFAS-----NRAALRYYLETGSTETG--LSFTDLLSRADQGDSR 300 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 A+ + + ++GR + ++V P++I++ L+++ VI I+ Q LP Sbjct: 301 AEKALDMMAHYLGRGMRMIVAGLAPERIVVVGDLTRSWQRFGSVIEAEIQAQVLPG 356 >UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q516_CATAD Length = 404 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 102/376 (27%), Positives = 164/376 (43%), Gaps = 35/376 (9%) Query: 31 VSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSL 90 VSR +L+RLA ++ A+++ +V +++ LV E ++ N GRP L + + + Sbjct: 30 VSRPELARLAGMSSAAVSNVVSDLISDGLVAEAGSVDS-NGGRPRTMLAARPGFGYAVGV 88 Query: 91 RISRGEIFLALRDLSSKLVVEESQELALKDDLP------LLDRIISHIDQFFIRHQKKLE 144 I I + L D + + + E+ + P ++ + S +D + H E Sbjct: 89 DIGETHIHVVLFDWTLSTLATSTHEIRVGRLDPDVVVRLVVSGVRSLLDSTGVPH----E 144 Query: 145 RLTSIAITLPGII-DTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAE 203 RL I I +PG + + E G+VH +PLG+AL P+ I + AE Sbjct: 145 RLLGIGIGVPGAVQEGERGVVHAPTL--GWSGVPLGDALRAELDAPILIDNCARTLGQAE 202 Query: 204 ALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHG 263 A GA R AR + + VGA + L +GSSS E GH ++ G+ C CG+HG Sbjct: 203 AWRGAGRDARRAVVALWGVGVGAAIAEGSSLAESGSSSTSEWGHAVIEARGRACRCGSHG 262 Query: 264 CLETIASVDSILELAQLRLNQSMSSMLH--GQPLTVDS----LCQAALRGDLLAKDIITG 317 CLE +IL+ + + H G+P T D + + A R A + T Sbjct: 263 CLEAYVGATAILD----------AYLAHPAGKPFTSDGTEAKMAELAARATTGADEAATA 312 Query: 318 VGAHVGRILAI----MVNLFNP-QKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 L I ++N+ NP Q IL G + +L P I ++ R+ ALP Sbjct: 313 TFDEAAEYLGIGVGNLINMINPDQVILAGWVGEQLGPLLMPAIREAARRHALPYLFDQTR 372 Query: 373 VESTQFSNQGTMAGAA 388 ++ + GAA Sbjct: 373 IDVGELGPGAVALGAA 388 >UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=A5IKW0_THEP1 Length = 379 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/386 (23%), Positives = 176/386 (45%), Gaps = 30/386 (7%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 +IK N ++ ++I + P+SR D+S + L P+S+T++ +E L+ E I+E G Sbjct: 7 RIKILNKKSILKVIHENHPISRSDISEVTGLTPSSVTRLTKE-----LIDEGYIREIGTM 61 Query: 72 GRPAVGLVVETEAWH----YLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 G+ + G +LSL G + + E + + Sbjct: 62 GKNSPGRRRRILLDLRKNAFLSLVFDIG---VNITTYGVGFFDGEVEPRGTFNTPREPVE 118 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 + + + + R + R++ I++++PG++D E + P E + + + E L+ Sbjct: 119 FFNIVKEIYERISGEY-RISRISLSVPGMVDMEEKKILLAPNLE-WENVSIKELLK--VD 174 Query: 188 VPVYIQHDISAWTMAEALFGAS-RGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 VPV ++ + +AE R ++ + ++I VGAG++ DG + S + E G Sbjct: 175 VPVLADNEANLSMLAEKYHSEDLRNVKEAVFIIIREGVGAGLMIDGKIFRGPSFTAGEAG 234 Query: 247 HTQVDPYGKR-CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 H V+ Y R C+C N GC E ++S++ +E L G+ ++ Sbjct: 235 HMTVNMYSDRQCHCSNWGCWELVSSINWAIE--------QYGKELPGKN-AIEKFQALKQ 285 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 R D AK I+ ++ + +VN+ NP+ +++G + D ++ D + Q+AL Sbjct: 286 RND--AKRILMKFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFLDIVKDFVHQRALK 343 Query: 366 AYSQHISVESTQFSN-QGTMAGAALV 390 A + + + +T+F N + GAA++ Sbjct: 344 AAVKDLKIRTTEFRNISSNLVGAAVL 369 >UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRQ2_ALIAD Length = 399 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/368 (23%), Positives = 164/368 (44%), Gaps = 33/368 (8%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +++ N V +LI L SRID+S++ L A+++ IV E++ LV E+ + G Sbjct: 10 MRRMNRATVLKLIRDLRTTSRIDISQMTGLNKATVSNIVDELIAEQLVLEVGYGSSSG-G 68 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD----DLPLLDRI 128 R + L A + + + + + + ++ + V + + L L + LL+ I Sbjct: 69 RKPILLRFNANAAYAIGVDVQLSHMTTVVCNIRGEPVYRQVRTLGLSEAPDVRAVLLEAI 128 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 + + L + PG++D G V+ +P V E + L + + Sbjct: 129 EEELRKAIAAAPPSPYGLLGACLAFPGMVDFRRGAVYYLPSLF-VGEWEILADLGRSVDI 187 Query: 189 PVYIQHD--ISAWT--MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 P+++ +D AW MA+A+ ++++ V + +GAG++ +G L E Sbjct: 188 PLFLDNDANCGAWNEYMAQAM-----KLKNLVFVNMGLGIGAGIVIEGKLYRGRDGIAGE 242 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSIL--------ELAQLRLNQSMSSMLHGQPLT 296 GH ++P G C CG +GC E AS ++ +L+ L L S+ Q Sbjct: 243 AGHMTINPMGSACMCGGYGCWEEYASERGLMRYLREAGADLSALSLRDSLLEQALEQAQN 302 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + C A +G ++G +A ++NL NP ++++G +++AA + P + Sbjct: 303 DNRACIRAFH----------SLGQYLGLGIANLLNLLNPDEVILGGSVARAATFVLPEVE 352 Query: 357 DSIRQQAL 364 I+ +AL Sbjct: 353 RVIKHRAL 360 >UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F498_ACIC5 Length = 402 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/378 (23%), Positives = 177/378 (46%), Gaps = 21/378 (5%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 ++ N + +I P+SR DL+R++ L +++++I+ +++E ++E + R Sbjct: 18 RRINRDILLEIIRARQPISRADLARVSGLQRSTVSQIIEQLIEELWIREGAVARLPRGRR 77 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHI 132 P ++V E L+ + + +A+ DL+ +++ EL+L D + I+ + Sbjct: 78 PT--MLVLNEDVVVLTADLHPRKAAIAVIDLNGRVL--SHAELSLSHDPAKVATAILECM 133 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDV--KEMPLGEALEQHTGVPV 190 + H +K R + ++LPG +D++ R+ F ++ + L +AL + +PV Sbjct: 134 RRLRQAHPEKSFR--GVGVSLPGRVDSQ---TQRLIFAPNLHWPDFDLRQALAKGLRMPV 188 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 +++ +A +E FG +G ++ + + + +G G++ +G L+ + E GH + Sbjct: 189 EMENAANACLTSELWFGRMQGVQNAVLITVSEGIGGGILANGQLVTGQNGMAGEFGHISL 248 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 DP G RC CG GC ET AS A LR Q S + + L + Sbjct: 249 DPRGPRCGCGQRGCWETFASCK-----AALRHYQESSGA--SRRIAYQDLLALGAEKNPH 301 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 A +T +GR L +++ +P+ +LI ++ A +++ P + + Q L Sbjct: 302 AVGALTEQARQIGRGLRLVIASLSPELVLIAGEVTSAWNLVAPALRKEMEAQWLGGTMPR 361 Query: 371 ISVESTQFSNQGTMAGAA 388 I E T S+ + GAA Sbjct: 362 I--EPTFDSDAARLRGAA 377 >UniRef50_Q3ZAE5 ROK family protein n=5 Tax=Dehalococcoides RepID=Q3ZAE5_DEHE1 Length = 336 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 7/281 (2%) Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + + I +++ R+ + + +++ + G ID NG+V + P +++PL + L Sbjct: 51 VFENICRVLERLLERNNLCISQFEALSAAVAGGIDMPNGLVTQSPHLPVWRDVPLRDMLA 110 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + + ++ +D SA +AE GA RG ++++ + + +G G+I + L S Sbjct: 111 ERY-LKTFLINDASAAALAEHKLGAGRGVKNLVYLTVSTGIGGGIIINDELYLGQSGCAG 169 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQ------PLTV 297 EIGH +D G CGN GCLET+AS +I+ Q L S+L + LT Sbjct: 170 EIGHMCLDINGTEDVCGNVGCLETLASGTAIVRRVQAELAGGEFSLLSERFKADYSALTA 229 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 + + +AA GD L + +I G ++G LA + N+FNP+ I++G +SK +I Sbjct: 230 EDIGRAASEGDRLCQGVIRRAGEYLGIGLAGIANIFNPELIILGGGVSKLGEIFIEPARK 289 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGS 398 + ++A + + ++ + + GAAL G Sbjct: 290 MLFKRAFRLAGDDVRLVASFLGDNAGVTGAALYAYGCLGGG 330 >UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acnes RepID=D1Y8Z8_PROAC Length = 403 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 150/344 (43%), Gaps = 21/344 (6%) Query: 30 PVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLS 89 P+SR +LSR L+ ASIT + E+ LV+E G GRP L +E + Sbjct: 32 PISRAELSRRTHLSKASITNLAAELAARGLVREGSPDRNGTVGRPGTMLTLEGARVCGVG 91 Query: 90 LRISRGEIFLALRDLSSKLVVEESQELALKDDLPL---LDRIISHIDQFFIRHQKKLERL 146 L I+ + + + DL ++ + +Q + LP+ LD + + + + Sbjct: 92 LEINAEYLAVCVVDLCGTVLYDRAQPFDVAS-LPISDVLDEVAGIMRDTLEQLHSARRHV 150 Query: 147 TSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH--TGVPVYIQHDISAWTMAEA 204 + ++ PG+I G VH + +++PL L Q + + +++D +AE Sbjct: 151 AQVMVSAPGVIKQPAGTVH-LASNLGWRDVPLRSQLLQRLDADISLQVENDAKLAAVAEY 209 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 RD++ + D VGAG+I G L+ S E+GH +DP C+CG GC Sbjct: 210 RRYEDSDVRDLVYLSGDIGVGAGIIAAGQLMRGWSGFSGEVGHLHLDPRNLPCHCGRTGC 269 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC----QAALRGDLLAKDIITGVGA 320 E + L RL+ QP +D L A RGD + + + Sbjct: 270 WEARVGLPEFLAHTGDRLD--------AQP--IDRLLIQIQDRATRGDQQVLNALDNLAT 319 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 + L++++++ NP+ +++G S D L P I+ + + L Sbjct: 320 SLAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTARRL 363 >UniRef50_UPI0001693F21 ROK family protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F21 Length = 322 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/281 (25%), Positives = 136/281 (48%), Gaps = 12/281 (4%) Query: 117 ALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDV--K 174 A K +L+R+ + + Q L L + I PG I+ E+G+ F ++ + Sbjct: 35 AAKGSGFVLERMAAMVKQLLEETGIPLNELQGVGIGCPGFINPEDGVCM---FAGNLGWR 91 Query: 175 EMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHL 234 ++P+ L VPV+I +D+ + EA GA+RG + ++ + + + A ++ HL Sbjct: 92 DLPVAHLLSAKLQVPVFIDNDVRMYVFGEAAAGAARGYKHLLGITLGTGLAAAMVNTRHL 151 Query: 235 LHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-- 292 + G E+GH ++ ++C CG GCLET+AS I++ Q + +S+L Sbjct: 152 YYGGGYMAGELGHIHMEGEHRKCGCGMSGCLETVASATGIVKQVQEVVRTGATSVLQEWL 211 Query: 293 -----QPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA 347 LT + +A GD +A ++ G +GR LA V L++P ++IG + A Sbjct: 212 KDEKLDALTSADVSKAYDAGDAVAVQVMQHTGTLLGRGLAYAVTLYSPDALIIGGGAALA 271 Query: 348 ADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA 388 + LF + + ++ + P Y + + + + + G + G+A Sbjct: 272 GERLFKPMREELKLKVYPGYWERLHIHQGELIDDGGVIGSA 312 >UniRef50_D1CBE0 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBE0_THET1 Length = 314 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 10/234 (4%) Query: 155 GIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARD 214 G++ T N +P + D PL L+ G+P+Y+ +D A+ + + +FG +G+ Sbjct: 82 GVVSTLN-----IPGWRD---FPLKSRLQSVLGLPIYMDNDAKAFALGQYMFGEGKGSSY 133 Query: 215 VIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSI 274 ++ +++ VG G+I G LLH S + IGH V+ G +C CG GCLE IAS SI Sbjct: 134 MMGIILSTGVGGGIIALGKLLHGKSYNAGHIGHMVVEQDGPQCACGGRGCLEAIASGPSI 193 Query: 275 LELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN 334 +L L+ S +T + + + AL+GD A+ I G GR +A +L + Sbjct: 194 AKLYVAALHPGSSQ--DTSQITSEVVARKALQGDEDARKIFERAGTATGRAIASAASLLD 251 Query: 335 PQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA 388 ++G + ++ D++ + ++R A ++ ++ + + + GAA Sbjct: 252 VNLFVLGGGVMRSGDLILNPLLRTVRAHAKLSFLNNLEIRVATDPGEAALIGAA 305 >UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAU2_RUMHA Length = 399 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 16/270 (5%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 + I+ N V I PVSR +L++ L A+I+ IV+E+LE + ++E+ + Sbjct: 21 EMIRNNNRRLVLEFIINNPPVSRAELAKQLSLTKATISNIVQELLEQNFIREIGSAQTS- 79 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR + L LSL I +I L +L E QE+ P D ++ Sbjct: 80 MGRKPILLEFNKAYGFALSLEIQPQQIIALLTNLKG-----EVQEIKKIPFCPQ-DNLLQ 133 Query: 131 HIDQ---FFIRHQKKLE-RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 H++Q F+IR + ++ ++I + G++ +N I+ P+Y + + LG L++ Sbjct: 134 HLEQILNFYIRENTAFKNKIIGVSIGIYGVVQ-KNEILF-TPYY-PLPKSGLGTHLQETF 190 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 +PV+++++ + + EA F +++I + + +G G++ +G L E G Sbjct: 191 QIPVFVENEANLSVLGEAAF--HHKYKNMIHINVHDGIGMGILVNGRLYKGRDGYAGEFG 248 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILE 276 HT + P GK C CGN GC E AS +ILE Sbjct: 249 HTILFPDGKPCPCGNQGCFELYASQRAILE 278 >UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUP6_ALKMQ Length = 392 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 82/387 (21%), Positives = 179/387 (46%), Gaps = 24/387 (6%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 DQIK+ N + +I Q +++ +++ +L+ +IT + +++E LV+E + + Sbjct: 10 DQIKEINRSNIINMIKQKYEITKHEIAVALKLSIPTITTNINQLIEEGLVEEAGVGNSTG 69 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEES----QELALKDDLPLLD 126 +P + +VE A + + +S ++ + L DL++ ++ E S ++L+ K +LD Sbjct: 70 GRKPMILKLVEN-ARFSVGVDVSPDKVRILLIDLNNTIIDEASFDYVKDLSFKG---VLD 125 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 + + I++F ++ ++ + I+LPG++D + I+ P V++ E + Sbjct: 126 EVKTEIERFMTQNNISKNKILGVGISLPGLVDEDRLILENAPNI-GVRDFNFQE-FQDSL 183 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 + V+I+++ + AE G + R+V+ V I VG G+I + H+ + + E G Sbjct: 184 QLRVFIENEANIAAYAEKEIGKTVNMRNVVYVSITEGVGTGIIVNQHIYKSSNKKAGEFG 243 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 H ++ + C CG GC E AS ++ + L V +L + Sbjct: 244 HMRISDEPRPCNCGRTGCWELYASKKALSRYYE-----------ESTGLKVSTLDEIFSE 292 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNL---FNPQKILIGSPLSKAADILFPVISDSIRQQA 363 + +G ++ + + N+ NP+ ++IG L K + +I+ ++ Sbjct: 293 ESFNMPSVKEAIGRYIDCLFIGIENIILGLNPEFVIIGGELGKYEKEMLTLINGRNNMKS 352 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALV 390 + V + ++G++ GAAL+ Sbjct: 353 SFVEYEGTKVVFSALKDKGSLIGAALL 379 >UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2A3_9CLOT Length = 397 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 147/304 (48%), Gaps = 27/304 (8%) Query: 22 YRLIDQL---GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE--IKEAGNRGRPAV 76 ++++D++ GP+SRID+S + PA++++I M++ +L+ E+ I E GR + Sbjct: 12 FKILDKIYAKGPISRIDISNETGITPATVSEITGNMIQENLIHEIGEVIPEENKSGRKKI 71 Query: 77 GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFF 136 L + Y+ +S I L D K+ E++ +L D L+ I+S ++F+ Sbjct: 72 LLGISPNHSFYIGTELSPKYISFCLTDNIGKIYKEKTIQL----DNSNLEEILS--EEFY 125 Query: 137 IRH-QKKLERLTS-----IAITLPGIIDTEN-GIVHRMPFYEDVKEMPLGEALEQHTGVP 189 I ++ T+ I I LPG D N I+ F+++ L E + +P Sbjct: 126 INKLSSFIDSCTNYNPKGIGIALPGHFDEVNKSIITNNSFWKNFDITILLERFD----LP 181 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 +Y ++++ T++E LF + + I + + + +G L + + EIGH Sbjct: 182 IYFENNVKCMTLSERLFSFNGNDDNFIFFHVGRGMFCSYMYNGELYAKDNFLVGEIGHIV 241 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAA 304 V P G+ C CG GCL+T S I++ +Q+ + S ++ L +T++++ +A Sbjct: 242 VHPNGELCECGKRGCLQTYGSEAWIIKKSQILFDNSETTYLKQLVSERNKITIETILKAY 301 Query: 305 LRGD 308 GD Sbjct: 302 RLGD 305 >UniRef50_C0BV65 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BV65_9BIFI Length = 374 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 91/333 (27%), Positives = 158/333 (47%), Gaps = 38/333 (11%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 I+ +N A + + +SR ++ +L L+ + +++ EM++ +++EL RG Sbjct: 13 IRISNITAAFEQLFPATQMSRANIGKLIGLSRFTTSEVTGEMVDNRILRELGPDNREGRG 72 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFL-ALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 + + L ++T+ W +S+ +S + AL DLS ++V + EL + + D +I Sbjct: 73 KRSQVLAIDTDFWRIVSVDLSNPMLVKGALADLSGRIV--DRTELPVDHGCSVND-VIDL 129 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 Q L L I I + GI++ NG+V R + E+PL +E TGVPV Sbjct: 130 CRQLI--SSTPLPTL-GIGIAVTGIVE-PNGVV-RKSVHLGWSELPLKTEVENATGVPVI 184 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 + +D +A +AE FG + + + + I VGA + + ++ S + EI H VD Sbjct: 185 VGNDTNAALVAERFFGDC--SPNSMLISIGRGVGAALCLNDVIIEGSSFTAGEIAHVVVD 242 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 P G C CG GCLE+ S D + Q R++Q ++ H Sbjct: 243 PNGPICECGKQGCLESFVSGDRL----QQRISQDPAARTH-------------------- 278 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILI-GSP 343 I+T GA +GR++AI L + + I + G+P Sbjct: 279 --ILTEAGALLGRVMAIPAGLLDLRDISVYGAP 309 >UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GID9_9FUSO Length = 398 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/391 (19%), Positives = 182/391 (46%), Gaps = 20/391 (5%) Query: 22 YRLIDQL---GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 YR+++++ VSR DL++ +L A+I+K +++++ +++ E E+ GRP L Sbjct: 17 YRILEKVMKDSEVSRTDLAKEMELTSAAISKAIKKLMLQNIIMEHATLESTG-GRPRKSL 75 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIR 138 +V E + + + G I + L+ +++ ++ K +LD + I + Sbjct: 76 IVNKEYKKIIGVNLGAGFINIVASHLNGEIIQIRQRKFVYKTQEKVLDLLYEGISDMVEK 135 Query: 139 HQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISA 198 + E + I + G++D + G V P ++ K++ + LE+ + V +++D+ A Sbjct: 136 FGE--ESIIGIGLATHGLVDRKKGTVIFSPHFK-WKKLDIRRELERKFNLKVIVENDVRA 192 Query: 199 WTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGK-RC 257 AE ++G + ++ + + I + VGA + +G + + S E+GH V+ +C Sbjct: 193 MLTAEHMYGCAGNMKNFMLLYIRNGVGAAIFLNGKIFEGSNYSAGEVGHFIVNEKSTIQC 252 Query: 258 YCGNHGCLETIASVDSIL-----ELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 CG GCLET S +++ EL + N+S + +T+D + + + Sbjct: 253 RCGKFGCLETECSEQALINKVVWELEKKDKNESK------EKITIDKIYSRSKHKEEPYY 306 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 I+ G+++ ++N+ + +++ + + + + L +++ + Sbjct: 307 SIVKEAAYETGKVIGNILNILDIDNVVVAGDIIMTEKLYMNNFRKGVDRMILEDFNKKVK 366 Query: 373 VESTQFSNQGTMAGA-ALVKDAMYNGSLLIR 402 + S+ + + GA +LV ++ G L++ Sbjct: 367 IVSSALDDMIGIYGAISLVTSNLFVGEKLMK 397 >UniRef50_D2PPN2 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PPN2_9ACTO Length = 402 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 99/397 (24%), Positives = 176/397 (44%), Gaps = 21/397 (5%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + PG I + +G V L Q GP +R ++R L+PA++T++ ++++ L++ELE Sbjct: 3 HSPGPIPRGDLVPSGIVGLLGTQ-GPTARTAIARTLGLSPATVTQVTKDLIARGLIEELE 61 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKL--VVEESQELALKDDL 122 + N GRPA L + +A L +++ + + +L + V + D L Sbjct: 62 SVPS-NGGRPARLLGLVQDAGVALGAKVTADHVAIVTVELDGTVRSSVSHDYDPGADDAL 120 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 P L RI++ +RL + + +PG +D++ + P + P+G +L Sbjct: 121 PRLGRILAQ------EVAALDDRLLGVGVGVPGSVDSQASGIVDAPTLS-WQAAPVGPSL 173 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 G PV + +D++ AE L+G R + V I +G G++ DG + + Sbjct: 174 RAAIGSPVLVDNDVNTLAAAERLYGIGRAHSSYLVVTIGRGIGCGIVVDGGIYRGANGGA 233 Query: 243 VEIGHTQV--DPYGK-RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 EIGH V D + C CG+ GCLE + A+ R + G T+ + Sbjct: 234 GEIGHIPVWHDEQDQLPCTCGSTGCLEAHVGAAGLCRTARDR-------GVIGPRGTLPT 286 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L +AA GD A+ + GA +GR LA +++ +P+ +++ S Sbjct: 287 LLRAAATGDEAARQVFAAAGAMLGRALAGVIHTIDPEVVVLMGEGVDGWQYWQTGFEPSF 346 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYN 396 R+ LPA V +Q A+LV + ++ Sbjct: 347 RRSLLPARKAVPVVVEPWTEDQWARGAASLVLASPFD 383 >UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIY1_9ACTO Length = 423 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 85/348 (24%), Positives = 153/348 (43%), Gaps = 9/348 (2%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 D + T AG + L+ +SR++L+ L+ L A+IT +VR +++ LV E+ ++ G Sbjct: 25 DDGRVTTAGRMLDLLRTRSTLSRVELAELSGLTQATITHVVRRLIDGGLVLEVGREQQG- 83 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEES-QELALKDDLPLLDRII 129 RG+P L + +AW+ + +++ R + + D + + V + + + Sbjct: 84 RGQPRRLLELNADAWYAVGVQVDRTTTTIVVIDFAGRRVATAGFRGTGTSGPDAAVSALA 143 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 HID ER+ + + G D E G++ D + PL L G+P Sbjct: 144 DHIDDLLHSTAVPRERVIGVGLVTHGPQDRERGMLLMAHPTPDWLQYPLTSTLSNRLGLP 203 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVV-IDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 V +++D +A E G D ++ + +G G++ +G+ +S+ VEIGH Sbjct: 204 VLLENDATAAATGEQWSGTV--PTDTFGLIYLGSGLGGGIVANGNAYRGRASNAVEIGHV 261 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILE--LAQLRLNQSMSSMLHGQPLTVD--SLCQAA 304 + C CGN GC E A +++ LA L + H + D + +A Sbjct: 262 GLMGASAPCVCGNCGCAEAEAGPHTVVAQVLAHPDLAGRLGIKAHEEDTLADFERVARAW 321 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 D A I+ +GR MVNLF+ +++ P +A L+ Sbjct: 322 QADDPDATAILQRSARWIGRAAVTMVNLFDLDTVVLAGPALISAGPLY 369 >UniRef50_D2Q611 ROK family transcriptional regulator n=2 Tax=Bifidobacterium dentium RepID=D2Q611_9BIFI Length = 413 Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 164/367 (44%), Gaps = 29/367 (7%) Query: 32 SRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLR 91 S+ +L R LA ++++ V +L ++ + A +RGRPA LV++ Sbjct: 46 SKAELVRETGLARSTVSSCVDGLLHRGVLTTSGVI-AVDRGRPAERLVIDDRLGLIAVAD 104 Query: 92 ISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIA- 150 + L + D++ +L+ E +++ D P + F ++L R+ S Sbjct: 105 VGARHTMLGIADMNMRLLAHEWHVISIADYTP---------EDFLAWVSEQLWRMASAVN 155 Query: 151 ---------ITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTM 201 ++LP ID R P ++ G PV +++D + + Sbjct: 156 ADLPLRHAVLSLPARIDIREDAPIRPPIMPGWDAFDAVRHMQDALGCPVGVENDTNIRAL 215 Query: 202 AEALFGASRGARDVIQV-VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYG-KRCYC 259 +A R +I+V + G ++ DG + H S EIGHT DP KRC C Sbjct: 216 GDAAM-LPEDERPIIEVKIGTGIGGGIIVKDGRIFHGFDGSAGEIGHTSYDPRNRKRCAC 274 Query: 260 GNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVG 319 G GCLET ASV A LR Q++S +P +V+ L + G+L A+ + G Sbjct: 275 GQTGCLETQASVP-----AMLRRMQALSPTAD-EPDSVEQLIERLRDGNLGAEQAVREAG 328 Query: 320 AHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFS 379 +G ++A + N+ NP+ +++G + +A+D L I ++ + A P ++++S+ + Sbjct: 329 EAIGIMVATLCNVLNPRHVIVGGLIVEASDELLTAIRTTVYRTARPLTTRNLSIGRSPLG 388 Query: 380 NQGTMAG 386 +AG Sbjct: 389 RFAGLAG 395 >UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridium thermocellum RepID=A3DCE9_CLOTH Length = 404 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 75/387 (19%), Positives = 181/387 (46%), Gaps = 8/387 (2%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 ++ I N ++ I + ++R +++ L+ ++ I ++++ ++ + ++ Sbjct: 9 LNSITSNNRMNIFNCILEAKEINRAVIAKKVGLSIPAVMSITDDLIQKGIIYVIGKGKSS 68 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRII 129 RP + L V + + ++ + + R + + + + +V + S+ + L+++I Sbjct: 69 GGKRPEL-LAVVPDRFFFVGVDVGRTSVRVVVMNNCRDVVYKVSKPTESVEPDELINQIT 127 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 + + L+R+ I + +PG+I+ G V P + + L + L++H Sbjct: 128 EMTMESINESKFPLDRVVGIGVAMPGLIERGTGRVIFSPNF-GWNNIALQDELKKHLPFN 186 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V +++ A + E ++ V + + +G+ ++ L + S + EIGH Sbjct: 187 VLVENANRALVIGEIKNTQPNPTSCIVGVNLGYGIGSAIVLPNGLYYGVSGTSGEIGHII 246 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQL----RLNQSMSSMLHGQPLTVDS--LCQA 303 V+ +G C CGN+GC+E+IAS ++I A++ ++ S+ G +D+ + A Sbjct: 247 VENHGSYCSCGNYGCIESIASGEAIAREARIAIANKIQSSVFEKCEGDLKKIDAKMVFDA 306 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD LA+ I+ ++G+ LAI +N+ +P++I++ L+ + D +I ++ + Sbjct: 307 AKEGDHLAQSIVEKAADYIGKGLAITINMLDPEQIILCGGLTLSGDFFIDMIKKAVSKYQ 366 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALV 390 + ++ + + T G A + Sbjct: 367 MRYAGGNVKIVVGKSGLYATAIGGAWI 393 >UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D084_HALOH Length = 378 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 93/394 (23%), Positives = 181/394 (45%), Gaps = 22/394 (5%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q G++ +K+ N + + + Q GP+SR DL+++ L+P +I+ I E+++ L+ E+ Sbjct: 2 QRGNMKLMKKINRALIIQTLSQQGPLSRADLTKITDLSPTTISSITEELIQEGLIVEVGE 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 E+ RP + L + E ++ LS+ I+ +++ L +L + V+ +L K P L Sbjct: 62 GESKGGRRPIL-LDINPEDFYILSVNIAVDVMYVYLFNLKFQ-VINSVHDLIKKPVSPNL 119 Query: 126 DRIISHIDQFFIRHQK-KLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 D + + Q + + + + + I GII+ E G++ + + PL + +++ Sbjct: 120 DSQLKELVQKVVENSNIGKKNVVGMGIGATGIINKEKGLITYSASL-GISDYPLLDKVKR 178 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 P+ +++D + + E FG R + ++I +G G+I D + E Sbjct: 179 EYDFPILLENDTNLAALGEKKFGCGRQLTNFFYIMIGSAIGGGIIIDNEIYRGKFGGAGE 238 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 GH V+ G C CGN GCL + + I ++ +S ++ DS C+ Sbjct: 239 FGHITVEKDGPLCECGNQGCLNAVLT-PYITVRSREEFRKSFQEIIKDD--NFDS-CRYH 294 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPV-ISDSIRQQA 363 + LA I LF+P+ I++G +++ A F + + I++ + Sbjct: 295 EFCEYLAMAITN------------YTKLFDPEAIVLGGEIARIAPERFYIDLEKYIKRMS 342 Query: 364 LPAYSQHISV-ESTQFSNQGTMAGAALVKDAMYN 396 L + I V S+ +N + GA L D +YN Sbjct: 343 LKGMNSKIPVLPSSIRTNAVVLGGACLCFDNLYN 376 >UniRef50_A6TVI4 Putative glucokinase, ROK family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TVI4_ALKMQ Length = 316 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 72/274 (26%), Positives = 134/274 (48%), Gaps = 12/274 (4%) Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMP--FYEDVKEMPLGEALEQH 185 ++ IDQ + E + I + +PG+ + E G V+ F+E++ PL EAL++ Sbjct: 45 MVEMIDQLIKQEGISKEEINCIGVGIPGVCNKE-GFVYYATNLFWENI---PLAEALQEK 100 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 TG+ VY+++D + M E++ GA G ++ I + + VG G++ + + E+ Sbjct: 101 TGLSVYVENDATVAAMGESVKGALTGVKNAIFLTLGTGVGGGLVINNQVYSGNHGIGSEL 160 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML----HG--QPLTVDS 299 GH + C CGN+GCLET AS ++ + Q + + SML G + +T Sbjct: 161 GHMVIGENFYDCNCGNNGCLETFASATALTKYTQKLIKEGKESMLIEKTQGEIEAITAKL 220 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + + A GD ++ I + ++ +A ++N+ P+ I IG +S+A D L ++ +I Sbjct: 221 IFECAYHGDAVSIQAIERLVKYLSIGIANLINILAPEVIAIGGGVSQAGDYLLDKLNKTI 280 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 Q + H + + N + G+A+ A Sbjct: 281 PQYVWCNHVPHAKIVLAELKNDAGIIGSAMFARA 314 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=... 501 e-140 UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteoba... 446 e-124 UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyt... 413 e-114 UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selen... 410 e-113 UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammapro... 406 e-112 UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter Re... 405 e-111 UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacteriu... 404 e-111 UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillu... 404 e-111 UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n... 402 e-110 UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaprot... 401 e-110 UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostri... 397 e-109 UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1... 392 e-107 UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 Re... 391 e-107 UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK... 390 e-107 UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 390 e-107 UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU 389 e-107 UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix oreni... 385 e-105 UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D... 385 e-105 UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acid... 384 e-105 UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 379 e-104 UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n... 378 e-103 UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydi... 375 e-102 UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix oreni... 375 e-102 UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. ora... 374 e-102 UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenu... 372 e-101 UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibir... 369 e-100 UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp... 368 e-100 UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n... 368 e-100 UniRef50_Q9K992 Transcriptional repressor of the xylose operon n... 368 e-100 UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n... 366 e-100 UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_... 366 e-100 UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp... 366 1e-99 UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D... 365 2e-99 UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID... 364 4e-99 UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID... 363 6e-99 UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevi... 362 1e-98 UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I... 362 1e-98 UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium ha... 362 1e-98 UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus ... 361 3e-98 UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridia... 360 5e-98 UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=My... 358 2e-97 UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2I... 356 8e-97 UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp... 356 1e-96 UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepI... 354 3e-96 UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon auranti... 353 5e-96 UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR... 353 6e-96 UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans... 352 1e-95 UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter w... 349 1e-94 UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acid... 346 8e-94 UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterale... 346 9e-94 UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=... 345 1e-93 UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostri... 345 2e-93 UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_A... 344 3e-93 UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea b... 343 7e-93 UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiph... 342 2e-92 UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 342 2e-92 UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V... 342 2e-92 UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon auranti... 340 4e-92 UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ9... 340 6e-92 UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 T... 338 1e-91 UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridiu... 338 2e-91 UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida f... 338 3e-91 UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobact... 337 4e-91 UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Sa... 335 1e-90 UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentan... 335 2e-90 UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 ... 335 2e-90 UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM... 335 2e-90 UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Str... 334 4e-90 UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=... 334 4e-90 UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales ... 333 5e-90 UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=... 333 6e-90 UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=... 332 1e-89 UniRef50_C0B3V0 Putative uncharacterized protein n=1 Tax=Proteus... 332 1e-89 UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 332 2e-89 UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola ba... 332 2e-89 UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_... 332 2e-89 UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM... 332 2e-89 UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n... 332 2e-89 UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obsc... 332 2e-89 UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales Re... 330 5e-89 UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=S... 330 6e-89 UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH 330 7e-89 UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS61... 330 8e-89 UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N... 330 8e-89 UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp... 330 9e-89 UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geotherma... 329 9e-89 UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia g... 329 1e-88 UniRef50_C9YT50 Putative ROK family transcriptional regulator n=... 329 1e-88 UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminoc... 328 2e-88 UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=A... 328 3e-88 UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifi... 328 3e-88 UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=N... 327 5e-88 UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum ... 327 6e-88 UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostri... 326 8e-88 UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans... 325 2e-87 UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM... 325 2e-87 UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metallir... 325 2e-87 UniRef50_Q185Y3 Putative regulator of a specific sugar metabolis... 324 4e-87 UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyc... 323 6e-87 UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobact... 323 8e-87 UniRef50_C1D0G6 Putative transcriptional regulator, NagC family ... 323 8e-87 UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix oreni... 323 9e-87 UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepI... 322 1e-86 UniRef50_B2Q2V0 Putative uncharacterized protein n=1 Tax=Provide... 322 1e-86 UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID... 321 2e-86 UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiph... 321 3e-86 UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=M... 321 3e-86 UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistip... 321 3e-86 UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostri... 321 3e-86 UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae ... 321 4e-86 UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 321 4e-86 UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n... 320 6e-86 UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepI... 320 7e-86 UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytoferm... 320 8e-86 UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DS... 320 9e-86 UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter w... 319 1e-85 UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella for... 319 1e-85 UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168... 318 2e-85 UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliph... 318 2e-85 UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus fae... 318 2e-85 UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostrid... 318 3e-85 UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n... 318 3e-85 UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevi... 318 3e-85 UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=S... 317 4e-85 UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bif... 317 4e-85 UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiph... 317 4e-85 UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C... 317 4e-85 UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n... 316 6e-85 UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerot... 316 7e-85 UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsul... 316 8e-85 UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter... 316 8e-85 UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 316 9e-85 UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus ... 316 9e-85 UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB 315 1e-84 UniRef50_D1NYQ4 Protein mlc n=3 Tax=Providencia RepID=D1NYQ4_9ENTR 315 2e-84 UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6L... 315 2e-84 UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9... 314 3e-84 UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminoc... 314 3e-84 UniRef50_B2GIX7 Putative NagC family transcriptional regulator n... 314 3e-84 UniRef50_D1NUM3 Transcriptional repressor in the Rok family prot... 313 6e-84 UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostri... 313 7e-84 UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis... 313 1e-83 UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium R... 312 1e-83 UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitan... 312 2e-83 UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=A... 311 3e-83 UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar... 311 3e-83 UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C... 310 5e-83 UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulol... 310 5e-83 UniRef50_D2BD51 Transcriptional repressor of the xylose operon n... 310 5e-83 UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID... 310 7e-83 UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae... 310 7e-83 UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=... 310 9e-83 UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile R... 309 1e-82 UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n... 309 1e-82 UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter w... 309 1e-82 UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=S... 307 5e-82 UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetal... 307 5e-82 UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 306 6e-82 UniRef50_B2V1I0 Putative transcriptional repressor of the xylose... 306 6e-82 UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus Rep... 306 8e-82 UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Mi... 306 8e-82 UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillu... 306 8e-82 UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiph... 306 9e-82 UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobac... 306 1e-81 UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium ros... 306 1e-81 UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM ... 305 1e-81 UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM... 305 1e-81 UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID... 305 2e-81 UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6... 305 2e-81 UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces R... 305 3e-81 UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostri... 305 3e-81 UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B... 304 4e-81 UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 304 5e-81 UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reine... 304 5e-81 UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O... 303 5e-81 UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=... 303 9e-81 UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacteriu... 303 1e-80 UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acid... 302 1e-80 UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepI... 302 1e-80 UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerot... 302 1e-80 UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Re... 302 2e-80 UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiph... 302 2e-80 UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacte... 302 2e-80 UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI 301 2e-80 UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C... 301 2e-80 UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostri... 301 3e-80 UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=... 301 3e-80 UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Mic... 300 4e-80 UniRef50_C0W4H3 ROK family protein n=1 Tax=Actinomyces urogenita... 300 5e-80 UniRef50_C3QC45 ROK family transcriptional repressor protein n=1... 300 5e-80 UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1... 300 5e-80 UniRef50_UPI0001B509AF ROK family protein n=2 Tax=Streptomyces h... 300 7e-80 UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp.... 300 8e-80 UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacteriu... 300 9e-80 UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae A... 300 9e-80 UniRef50_C6LD35 Putative xylose repressor n=1 Tax=Bryantella for... 299 1e-79 UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID... 299 1e-79 UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=... 299 1e-79 UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus ... 298 2e-79 UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiph... 298 2e-79 UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5... 298 3e-79 UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD 298 3e-79 UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acn... 297 4e-79 UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp... 297 5e-79 UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipart... 297 6e-79 UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp.... 296 7e-79 UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_... 296 9e-79 UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulol... 296 1e-78 UniRef50_A3TZT8 ROK family protein n=1 Tax=Oceanicola batsensis ... 296 1e-78 UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Strepto... 295 2e-78 UniRef50_C7R070 ROK family protein n=2 Tax=Micrococcineae RepID=... 295 2e-78 UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versat... 295 3e-78 UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum D... 294 3e-78 UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum D... 294 5e-78 UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=... 293 6e-78 UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiph... 293 8e-78 UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus ... 293 8e-78 UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=... 293 1e-77 UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenen... 293 1e-77 UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium... 292 2e-77 UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A... 292 2e-77 UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidi... 291 2e-77 UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepI... 291 3e-77 UniRef50_A8UDG8 Xylose repressor protein n=2 Tax=Firmicutes RepI... 291 3e-77 UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavid... 291 4e-77 UniRef50_Q11DN8 ROK domain containing protein n=3 Tax=Phyllobact... 291 4e-77 UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus monil... 290 5e-77 UniRef50_C2BRU2 Transcriptional regulator n=3 Tax=Mobiluncus Rep... 290 5e-77 UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Pr... 290 6e-77 UniRef50_A3CKM1 ROK family protein, putative n=2 Tax=Firmicutes ... 290 7e-77 UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID... 290 9e-77 UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c Rep... 290 9e-77 UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=... 289 1e-76 UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter Re... 289 1e-76 UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophil... 289 1e-76 UniRef50_C2BT73 Transcriptional repressor n=1 Tax=Mobiluncus cur... 289 1e-76 UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC ... 289 2e-76 UniRef50_C2CVT4 Transcriptional regulator n=1 Tax=Gardnerella va... 288 2e-76 UniRef50_D2B0X7 ROK family protein n=2 Tax=Actinomycetales RepID... 288 2e-76 UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (N... 288 2e-76 UniRef50_C0W864 Rok family transcriptional regulator n=1 Tax=Act... 288 3e-76 UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia... 287 4e-76 UniRef50_B9JL48 Transcriptional regulator protein n=1 Tax=Agroba... 287 4e-76 UniRef50_D1W4V6 ROK family protein n=2 Tax=Prevotella RepID=D1W4... 287 5e-76 Sequences not found previously or not previously below threshold: UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5R... 316 8e-85 UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterale... 305 2e-81 UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5E... 302 1e-80 UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=M... 301 3e-80 UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curviba... 299 2e-79 UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enteroc... 291 2e-77 >UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=MLC_ECOLI Length = 406 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 406/406 (100%), Positives = 406/406 (100%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV Sbjct: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD Sbjct: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE Sbjct: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS Sbjct: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL Sbjct: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR Sbjct: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG Sbjct: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 >UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteobacteria RepID=Q7MLY6_VIBVY Length = 435 Score = 446 bits (1148), Expect = e-124, Method: Composition-based stats. Identities = 187/406 (46%), Positives = 286/406 (70%), Gaps = 2/406 (0%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + QPGHID IKQ NAG VY+LID GP+SRIDLS+ ++LAPASITKI RE++EAHLV Sbjct: 31 MYMAQPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKITRELIEAHLVH 90 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E ++EA +RGRPAVGL V W +LS+R+ RG + +AL +L +++++ ++ +D Sbjct: 91 ETTVQEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHERDQ 150 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +L R++ I++FF + +L+R+TSIAITLPG++++E GIV +MP Y +V+ + LG Sbjct: 151 DDVLARLLHEIEEFFQTYADQLDRVTSIAITLPGLVNSEQGIVLQMPHY-NVENLALGPE 209 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 + + TG+PV+I +D AW +AE LFG S+G + + + I H +GAG+I DG +L + Sbjct: 210 IYKATGLPVFIANDTRAWALAEKLFGHSQGNENSVLISIHHGLGAGIILDGRVLQGRHGN 269 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-QPLTVDSL 300 + E+GH Q+DP GK C+CGN GCLET+AS +I E R+ SS+L + +T++S+ Sbjct: 270 IGELGHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEELEDVTIESI 329 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 C+AA GD LA D+I +G ++G +AI++NLFNP+K+LIG +++A ++L+P I I Sbjct: 330 CEAAANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIE 389 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 +Q+LP Y Q + + ++F Q TM GAAL+K A+Y+G LL+++++G Sbjct: 390 EQSLPVYHQDLELVESRFYKQATMPGAALIKQALYDGLLLMKVVEG 435 >UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQJ9_BACS4 Length = 419 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 94/405 (23%), Positives = 204/405 (50%), Gaps = 10/405 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M Q G + +K N A+ +I GP+SR +++++ +L P ++ IV E++++ +V Sbjct: 1 MTFIPQTGSFEGMKSLNKTAILNIIRLKGPISRAEIAKMTKLTPPTVGSIVGELIDSKMV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E + + GR + L + +++ + + +R I + L K+ ++L+ Sbjct: 61 IEETGESKSHGGRKPIMLTINASSYYVIGIYGAREIIHTVIATLDGKISYSNEEKLSTPP 120 Query: 121 D-LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +D + + +++ + + K ++ I + + G++D + GI P ++ +P+ Sbjct: 121 TKDEYIDLLKNGVEKVLQQKRIKQNKVLGIGVGMHGLVDPQKGISIFSPHLH-IENIPIK 179 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 + LE +PV + +D+ +AE+ +G + + + + + +G+G++ +G + Sbjct: 180 QELESAFDIPVLVDNDVRTLALAESWYGEGKDISNFVCLSVGLGIGSGIMLNGEIYTGQY 239 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH------GQ 293 S EIGHT VD G RC CGN+GCLE AS +I+ + L S++++ Sbjct: 240 HSAGEIGHTVVDINGPRCQCGNYGCLEAYASELAIISRVKKGLRLGRSTIINDWIKETDS 299 Query: 294 PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA-ADILF 352 LT++ + AA +GD +++ G +G +A ++N+ P K+++ + +A + L Sbjct: 300 QLTIEMVFDAAEKGDAFVLEVLEETGRFLGIAVANLINILTPSKVILEGRIFEAGGNTLL 359 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYN 396 + + I++ +L +YS +S+ ++ +G + GA LV +Y Sbjct: 360 SPLKEIIKKSSLRSYSDDVSIVTSDLGKKGMVIGAFTLVLKELYT 404 >UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZR7_9BACI Length = 404 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 103/402 (25%), Positives = 197/402 (49%), Gaps = 9/402 (2%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G +K N V +I + GP+SR D+S+ A L P ++T IV ++L+ LV+ Sbjct: 1 MVQGMTGSFRLMKSLNRSLVINIIRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVK 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-D 120 E A GR V L + + + + + G+I + L +L+++L+ + + L Sbjct: 61 EGRTG-ASKGGRRPVLLSINYNNHYVIGVDVGTGQIRVGLSNLNAELLNRKKETLPAGIK 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + + +D +++ I I + GI+D E GI P + D E+PL E Sbjct: 120 AGEFMTILYRLVDDMITNSDVSRDKIVGIGIGMHGIVDEEKGISIYAPHF-DFGELPLKE 178 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 LE +PV +++D +AE FG +R +++ + + +GAGVI +G + Sbjct: 179 RLEARYEIPVKVENDARCSAIAEMWFGDTRANPNLVFINVGDGIGAGVILNGQIHRGHHH 238 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPL 295 E+GH VD G++C CG++GCL T+AS I E A + S+ L + + + Sbjct: 239 IAGELGHMIVDLNGRQCTCGSYGCLHTVASGIHIRERAIHEITLGRSTALREMRENKEDI 298 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 + + +AAL GD A+++ G +G + ++N NP +I++G + KA + + Sbjct: 299 DGEVIYEAALHGDEFAEELFAQAGRFLGLAVTNVINFLNPDQIVLGGGVMKAGAFVMKPL 358 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYN 396 +++ ++AL ++ + + + + GA +L+ ++ Sbjct: 359 VETVNRRALTDDARKTEITVSSLGSHSALLGAVSLILHDVFE 400 >UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammaproteobacteria RepID=A0KIG1_AERHH Length = 425 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 156/404 (38%), Positives = 250/404 (61%), Gaps = 2/404 (0%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + Q ++D IKQ N+ AVYRLID GP+SR+ ++ L+QLAPAS+TKI R+++E L++ Sbjct: 22 MTGGQIANVDLIKQVNSAAVYRLIDLQGPISRVKIAELSQLAPASVTKITRQLIEHGLIK 81 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E +A GR A+ L + ++S ++ RG + LAL DL K + + ++ + Sbjct: 82 ETSP-QASTGGRRAISLTTIKHRFQFVSAKLGRGYLQLALYDLDGKELDQHITQVTEIEQ 140 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 P++D ++ I F Q + L SIA+T+PG+++ E+G+V P Y+ ++ + L + Sbjct: 141 QPVVDMLLREIGAFIDSQQDRSRNLISIALTMPGLVNPESGMVIYTPKYQ-IRNLALAKL 199 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE H +P Y+ +D + +AE FG SR D I V + G+G+IT G + + + Sbjct: 200 LENHFNLPCYVGNDTRSLALAEHFFGESRDCMDSILVSVHQGAGSGIITKGKVFLGQNRN 259 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 + EIGH QV+P GKRC+CGN GCLETIAS ++I++ + +++ S L + +T+ +C Sbjct: 260 VGEIGHIQVEPLGKRCHCGNFGCLETIASNEAIVDKVKELISRGHLSSLQEKHITIQEVC 319 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 +AA+ GD LA+ +I VG H+GR +AI VNLFNPQK+LI ++ A +ILFP I + Sbjct: 320 KAAMAGDELARSVIENVGEHLGRAVAITVNLFNPQKVLIAGEITAAEEILFPAIRRCVEH 379 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQ 405 Q+LP++ + + + +F NQ T+ G ALVK A+ G LL +++ Sbjct: 380 QSLPSFHRGLPIVKARFQNQPTVGGFALVKRALLEGDLLQIIME 423 >UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter RepID=B0KBZ3_THEP3 Length = 408 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 98/397 (24%), Positives = 194/397 (48%), Gaps = 6/397 (1%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G+ + IK N V I GP+SR D+S+ L +++T IV E+ +LV E+ Sbjct: 4 RIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELENQNLVHEVGE 63 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPL 124 ++ GR + L + + ++I + AL +L S+++ + + + Sbjct: 64 ADSTG-GRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSNTV 122 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L+ ++ +I++ + + L I + + G++D + G + + + +G LE Sbjct: 123 LNMVVENIEKLITKIPYN-KNLMGIGVAVSGLVDQQKGKLIYS-GMLNWSNVEIGNILEN 180 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 VPVYI +D++A+T+AE +G R + I V +G+G++ + L E Sbjct: 181 KFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAGE 240 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH-GQPLTVDSLCQA 303 IGH + G++C CG GCLE AS D I++ + + S + + L+++ + + Sbjct: 241 IGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYEY 300 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD+LA D++ ++G L ++NL NP I++ A DI+ PVI+D ++ Sbjct: 301 AKEGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVKNNF 360 Query: 364 LPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSL 399 + + + ++ ++ ++G + GA+ L ++ L Sbjct: 361 FKMHEKKVQIKVSELGDEGWVIGASTLAISKLFEIPL 397 >UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67NW4_SYMTH Length = 403 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 108/399 (27%), Positives = 193/399 (48%), Gaps = 11/399 (2%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 + I+ N V RL+ G +SR DL+ L +++ +V E+LE V+E+ E+ Sbjct: 6 ELIRAINKQRVLRLVRSAGAMSRADLAERTGLTRPTVSAVVAELLEEGWVEEIGTGESSG 65 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GRP + L A + + G + L DL+ + Q + +D L +D++ Sbjct: 66 -GRPPILLRFNPRARWVIGAELGAGHVRAVLADLAGNVFHRFKQRVESRDPLIEVDQLER 124 Query: 131 HIDQFFIRHQK--KLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 + + + + + I + G+ID E G+ P Y+ V+++P+ L++ + Sbjct: 125 AVRYLLDQTPRYGPPTPVAGVGIGITGVIDPEEGVWRYSPHYQ-VRDLPVAPMLQERLSL 183 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PV+I++D A E FGA++G ++ + + +GAG+I DG L EIGH Sbjct: 184 PVWIENDARAMAWGERSFGAAQGVDNLAFIRVGVGLGAGIIIDGRLYGGAHQGAGEIGHI 243 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTVDSLCQ 302 V G RC CG+ GCLET+ S +I A R+ Q +++ + ++ + Sbjct: 244 MVKERGLRCRCGSDGCLETVGSAIAIARRAVQRMAQGEETLIRELCGGDPSKVIATTVIE 303 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 AA GD +A++I++ G +G + M+NL NP ++IG S+A D L + + ++ Sbjct: 304 AADAGDRVAQEILSEAGRFLGIGIGAMINLLNPAMVIIGGGTSRAGDYLIEPLRQAALER 363 Query: 363 ALPAYSQHISVESTQFSNQGT-MAGAALVKDAMYNGSLL 400 LPA + + + T+ + GAALV + ++ L Sbjct: 364 TLPALRERVKIVRTELGEDAGPLGGAALVIEELFRTPTL 402 >UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65CW6_BACLD Length = 390 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 104/396 (26%), Positives = 191/396 (48%), Gaps = 10/396 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q G +K N + I P+SR ++++ ++ P +++ IV+E++ LV+E + Sbjct: 2 QRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKESTL 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPL 124 + GR L + T A++ + + + L DL+ ++ S L + Sbjct: 62 GRSSG-GRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERF 120 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++ + + R + E++ I I + G++D E G+ P ++ +P+ + LEQ Sbjct: 121 MEVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMSRIAPIL-NLTNIPIKDVLEQ 179 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 + V +++D A + E+ FG A + V I VGAG++ +G L H E Sbjct: 180 EFNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAGE 239 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 +GH +D G++C CGN GCL+TI S +I E + RL +S S LT L + A Sbjct: 240 LGHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDS------LTAKDLFEMA 293 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 G ++ G +G L ++L NP KI++G + K + P I ++I+Q+AL Sbjct: 294 ENGCQTCIELFQETGVIIGIGLTNFIHLVNPGKIVLGGGVMKGGRFILPAIRETIQQKAL 353 Query: 365 PAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSL 399 A ++ V T+ ++ T+ GA +L+ +++ L Sbjct: 354 TAEARQTEVTITKLGDEATLYGAVSLLLAELFDPVL 389 >UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n=2 Tax=Bacillus RepID=Q9KDW7_BACHD Length = 407 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 109/398 (27%), Positives = 205/398 (51%), Gaps = 10/398 (2%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G +K N + I GP+SR D+++ +L P ++T IV E++E LV+E ++ E Sbjct: 5 GSFQLMKSMNRSLILNTIRLDGPISRADIAKKTKLTPPTVTNIVAELIEEKLVRESKMGE 64 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLD 126 + GR + L ++ + + L + + L DL+ ++ + + EL+ + L+D Sbjct: 65 S-RGGRKPILLTIDAKNSFVIGLDVGGYRVRAVLTDLNGEVEGQTTVELSSDLTEETLID 123 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 ++I F + + + +++ I I + GI+D ++G+ P ++ + + L E Sbjct: 124 QLIKITVTLFEQCKMQKDKVIGIGIGMHGIVDHQSGMAVFAPNFQ-LTNIDLKTPFESTF 182 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 VPV++++D A + E FG +G VI V + +GAG++ + L H EIG Sbjct: 183 DVPVFVENDARALALGETWFGNGQGIDHVICVNVGVGIGAGIVLNKRLFHGVHGIAGEIG 242 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTVDSL 300 HT VD +GK+C CGN+GCL+T+A + + E A + +ML ++ + + Sbjct: 243 HTTVDIHGKKCTCGNYGCLQTVAGGNMLKERAIHDIASGRKTMLLEKVEGDMDRISGEII 302 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 Q AL GD L+ +I+ G ++G + ++N NP +I++G +SKA D + + ++ Sbjct: 303 HQCALAGDPLSIEILEEAGKYLGIGITNIINFINPDRIIVGGGVSKAGDFVLEPLRKMVK 362 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNG 397 ++AL A ++ V + + GT GA LV + ++ Sbjct: 363 ERALTAKARETEVVTAELGEWGTAIGAVTLVLEDLFAP 400 >UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaproteobacteria RepID=NAGC_ECO57 Length = 406 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 162/404 (40%), Positives = 253/404 (62%), Gaps = 2/404 (0%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + Q G++D +KQ N+ AVYRLIDQ GP+SRI ++ +QLAPAS+TKI R+++E L++ Sbjct: 4 GGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIK 63 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E++ ++A GR A+ +V ET +H + +R+ R + + L DLSSK++ EE L + Sbjct: 64 EVD-QQASTGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQ 122 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L +++ I QF +Q+KL L +I++ LPG++D ++G +H MP + V+ L EA Sbjct: 123 QTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEA 181 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE+ V ++ HDI + +AE FGAS+ D I V + GAG+I++G + + + Sbjct: 182 LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGN 241 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 + EIGH QV+P G+RC+CGN GCLETIA+ +I + L Q S + T+ ++C Sbjct: 242 VGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTIC 301 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 +AA +GD LA ++I VG H+G+ +AI +NLFNPQKI+I +++A +L P I I Sbjct: 302 KAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINT 361 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQ 405 QAL A+ ++ V ++ ++ + ALVK AM NG LL LL+ Sbjct: 362 QALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 >UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ47_9CLOT Length = 401 Score = 397 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 182/396 (45%), Gaps = 13/396 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 + N AV I P+ R +++RL L+ ++ KI E E+ L+ E K G Sbjct: 9 VGIHNKEAVINTIRDNSPIFRAEIARLTGLSIPTVMKITDEFKESGLIYESG-KRTSEVG 67 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIISH 131 +P L +A + + + + + L DLS+K+++ E P +L++ I Sbjct: 68 KPPKLLSFVPDAKYIIGVDVGTTHVGAVLMDLSAKILLREWAPTHDGHTFPQVLEQTIQC 127 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 I + + ++ I + +PG+I E G + P E L++ +PV Sbjct: 128 IQKILDASSEYAGKILGIGVGVPGLISVETGKIILSPAI-GWHEGNFLAPLKERFRLPVV 186 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 + + + A M E FGA RG + + + + +G+ ++ + + + E GH +D Sbjct: 187 VDNVVRAMAMGELWFGAGRGLENFFCIGLGYGIGSSIVIGKQIYSGSTGTSGEFGHMTID 246 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTVDSLCQAAL 305 G C CG +GCLE IAS ++I + A+ ++ +SM+ + + AA Sbjct: 247 KSGPLCDCGCYGCLEAIASANAISKQARFAISNGANSMMFDIIHGNLNDINAKVVFDAAK 306 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 GD LA I+ V ++G ++ ++NL +PQ I++G +S+A D L + D + + LP Sbjct: 307 AGDSLANTIVNQVTVYLGIAISNVINLLDPQLIILGGGVSQAGDFLLNPLLDEVSRHVLP 366 Query: 366 AYSQHISVESTQFSNQGTMAGAA--LVKDAMYNGSL 399 HI + + GAA L+K+ + +G + Sbjct: 367 VKEPHIVI--SSLGEDAVAIGAATFLLKEYVESGKV 400 >UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1SS79_PSYIN Length = 408 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 135/405 (33%), Positives = 234/405 (57%), Gaps = 7/405 (1%) Query: 1 MVAENQPG-----HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREML 55 MV NQ +D IKQ N+ +Y++I++ P+SR+ ++ +++LAPAS+TKI R++L Sbjct: 1 MVRNNQQADSVIASVDHIKQLNSATIYKVIEKYAPISRVKIANVSKLAPASVTKITRQLL 60 Query: 56 EAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQE 115 + ++ E ++A GR A+ L T+ H L+++I + + L+ +L+++ + + + Sbjct: 61 QQGIICET-ARQASTGGRCAISLAPNTDNIHVLAIKIGQKTLSLSCYNLAAEQLTTKKIK 119 Query: 116 LALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE 175 + +D+ LL +IS ID F + QK + ++++IAI+L G+I+ + G+V P++ + Sbjct: 120 IKSEDEQQLLAFLISEIDNFIKKQQKNMGKISAIAISLSGLINPKKGVVLYSPYHP-LVN 178 Query: 176 MPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLL 235 PL +EQH +P +I + + +AE FGAS+ D I + I H VG+G+I +G L Sbjct: 179 FPLANKIEQHFQLPTFIGNHTRSLALAEHYFGASKECLDSILISIHHGVGSGIIIEGKAL 238 Query: 236 HAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL 295 + ++ EIGH Q +P G++C+CGN GCLET S I+E + + Q + L L Sbjct: 239 LGQNFNIGEIGHIQANPAGRQCHCGNFGCLETEVSDRVIVEKVAIAIKQGSFTRLSLDSL 298 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 ++ + QAA D L + I+ ++G+ +AI++NL NPQKI+I + +A L I Sbjct: 299 NIEKIYQAAEDNDPLCQKIVEDAATYLGKAIAILINLLNPQKIIIAGKIIRAKTSLLSTI 358 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL 400 I Q LP + + +E++ T+A AL+K A+Y G LL Sbjct: 359 EQCIAHQVLPNFQHKVQIETSLLEPDTTLAAFALIKQAIYEGDLL 403 >UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLD7_MOOTA Length = 410 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 98/403 (24%), Positives = 206/403 (51%), Gaps = 9/403 (2%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 N+ G++ +K+ N ++ +I + +SR L++L L PA+IT IVR+++ + V E Sbjct: 3 NEVGNLQLVKKLNRISILNIIRKHNTISRQQLAKLTGLTPAAITGIVRDLVASGYVIEKG 62 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 + ++ N GR V L ++ + L I+R L + +L +K ++ + + + D Sbjct: 63 LGKS-NGGRRPVKLQFNPDSGYVLGAEITRNSTTLGMVNLDAKPLILKQYNIDMTDPQQG 121 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY-EDVKEMPLGEALE 183 L R+ + + I + + + + + PG++D +V R P + +++P+ L+ Sbjct: 122 LSRLADEVTKMIIESGIESKNILGMGVAYPGLVDISTRVVKRSPNLGKKWRDIPIENWLQ 181 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + TG+ ++++++ +A MAE FG + +++ + + + AG+I +G L + Sbjct: 182 EMTGIKIFVENNSNAAAMAEYCFGRGKETKNMAYINLGEGISAGIILNGMLAYGFRGYTG 241 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRL------NQSMSSMLHGQPLTV 297 EIGH +D G C CGN+GCLE++ +V +++ A L + + L + + Sbjct: 242 EIGHLVIDEDGPLCNCGNNGCLESLCAVPALVRKANNELSLYNQKDPLKAIWLEKGEVKI 301 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 + + A A+ +I G ++G+ +A ++N+FNP+ I IG L++A + L + + Sbjct: 302 EDIMANANNVGSYAQKLIRQAGWYIGKAIAAIINVFNPEAIFIGGILAEAGNSLLDPLIE 361 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSL 399 S+++ A P + + +E + GA A+ A++ G + Sbjct: 362 SVQKHAFPELVREVRIELSSMRKDTGFYGACAIAIRALFEGGV 404 >UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK-family transcriptional regulator) n=2 Tax=Proteus mirabilis RepID=B4EVY3_PROMH Length = 403 Score = 390 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 194/401 (48%), Positives = 287/401 (71%), Gaps = 1/401 (0%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 P HID +KQ N G V+RLID+ GP+SRI LS+ A LAPASITKI RE++EAHL+ E E Sbjct: 4 PPSHIDHVKQFNLGTVFRLIDEHGPISRISLSKKATLAPASITKITRELVEAHLIHETEF 63 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 G RGRPAVGL +E++ W +L +R++ G + +LR+L ++LVVE++ + ++ L Sbjct: 64 PGLGFRGRPAVGLKLESKGWQFLCIRVNNGSLLFSLRELDNQLVVEDTFDFPKQNSDAFL 123 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 ++ ID FF R+Q ++ERLT+I+IT+ I+D +G+++ P+Y ++++PL + +++ Sbjct: 124 HHFLAAIDTFFQRYQSRVERLTAISITMNAIVDPISGVIYSSPYYA-IQDIPLADKIQEK 182 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 TGV V++QH ++AWTMAE+L+GA++ D++Q+VID VGAGV+T+G LH+ S S VEI Sbjct: 183 TGVAVFLQHSVTAWTMAESLYGAAKNNTDILQIVIDDIVGAGVVTNGKTLHSNSHSAVEI 242 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GHT+V +CYCG GCLET S+ +++ AQ ++ +S+L+ P+TV++LC A L Sbjct: 243 GHTKVIDSQTQCYCGAKGCLETEISIPQLIKKAQHLAQENPTSILNQYPITVETLCDAVL 302 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 GD A DII V +G ILA+MVN+FNPQKILIGSPL +A LFP+I SI+ LP Sbjct: 303 IGDKQALDIINLVAQRLGFILAVMVNIFNPQKILIGSPLCRAKSALFPLILSSIQHHVLP 362 Query: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 Y+ ++ +E T+ N+GT+ A+LVK+A+YNGSLL+ L+QG Sbjct: 363 RYAHNLVIEETELRNKGTLPAASLVKEALYNGSLLLELMQG 403 >UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1T9_PAESJ Length = 387 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 97/387 (25%), Positives = 183/387 (47%), Gaps = 14/387 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + G + IK+ N V + + P+SR +S L L A+++ +V++++++ LV Sbjct: 1 MKVTTTGDLTLIKKINTSIVLEAVLKQAPLSRAQISELTGLNKATVSNLVQDLIDSDLVV 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E+ E+ GR V L+ +A + + + + I L DL ++ E + L Sbjct: 61 EIGPGESSG-GRKPVMLLFNGKAGYAVGIDLGVNYIRGVLADLEGNVIAERKRSLKKHQL 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L ++ I++ + + I I +PGI+D + G + P E + + L + Sbjct: 120 EFTLKELVQCIEELIGKAPASPYGIVGIGIGVPGIVD-DQGSILFAPNLE-WRHVELQQM 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE+ +PV I ++ +A E +G RG I V + +G G+I + L + Sbjct: 178 LEEQFQLPVTIDNEANAGAQGEQKYGIGRGIAHQIYVSVGIGIGTGIILNKELYKGATGF 237 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+GH ++ GK C CGN GC E AS +++LE A S+ + L Sbjct: 238 SGELGHLSIEYNGKPCRCGNEGCWELYASENALLEQAAPLGFDSL-----------EDLL 286 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 AA G+ + + +G ++G ++ +VN+FNP ++IG+ +S+A L + S+ + Sbjct: 287 DAAEAGNEEVRALFYKIGEYMGAGISNIVNVFNPDVVIIGNRMSRAKTWLEEAVQSSVTR 346 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAA 388 + LP + + + + + +Q + GAA Sbjct: 347 RTLPYHRERLRILFAELQDQSAVRGAA 373 >UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU Length = 384 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 176/390 (45%), Gaps = 14/390 (3%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 +K+ N + + I + P+SR LS + L ++++ V +++ +V E+ + Sbjct: 4 ADQTFVKKVNQKLLLKEILKNSPISRAKLSEMTGLNKSTVSSQVNTLMKESMVFEIGQGQ 63 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 + GR V LV +A + + + + I L DL +V+++ + L D Sbjct: 64 SSG-GRRPVMLVFNKKAGYSVGIDVGVDYINGILTDLEGTIVLDQYRHLESNSPEITKDI 122 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 +I I F + + L I I +PG+ID + IV + +++ L ++++ Sbjct: 123 LIDMIHHFITQMPQSPYGLIGIGICVPGLIDKDQKIVFTP--NSNWRDIDLKSSIQEKYN 180 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 VPV+I+++ +A E +FGA++ ++I V I +G GVI + HL S E+GH Sbjct: 181 VPVFIENEANAGAYGEKVFGAAKNHDNIIYVSISTGIGIGVIINNHLYRGVSGFSGEMGH 240 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 +D G +C CGN GC E AS ++L+ Q + + L+ + A Sbjct: 241 MTIDFNGPKCSCGNRGCWELYASEKALLKSLQTK----------EKKLSYQDIINLAHLN 290 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D+ + + G ++G L ++N FNPQ +++ + + ++ ++ + + + Sbjct: 291 DIGTLNALQNFGFYLGIGLTNILNTFNPQAVILRNSIIESHPMVLNSMRSEVSSRVYSQL 350 Query: 368 SQHISVESTQFSNQGTMAG-AALVKDAMYN 396 + + G +++V D + Sbjct: 351 GNSYELLPSSLGQNAPALGMSSIVIDHFLD 380 >UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZI2_HALOH Length = 391 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 187/390 (47%), Gaps = 13/390 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G+ IK N +++LI + GP++R +L+ + +I+ V+ +++ V E E Sbjct: 4 KVGNSTFIKNLNQKRIFKLIHKEGPITRKELADNTDYSAGTISNHVKALIDQGFVIETEK 63 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL-PL 124 + GR V L V + + +S+ + + + L +L K+V + + Sbjct: 64 GYSSG-GRKPVYLTVNPDKGYIISVEVEVTRVKIVLFNLKIKVVAKTVFPINGPAQAKET 122 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + +I S I++ + K +++ I + +PG+ID E G++ P ++P+ + E Sbjct: 123 ISQIFSEIEKILSEREIKPDKILGIGVAVPGLIDKEEGLLEFAPNL-GWSKVPIVKYFED 181 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 GVPV ++++ +A + E F +D++ V I+ +G G+I +G L + E Sbjct: 182 KYGVPVVLENEANAAAVGEKEF-VYPDIKDMVYVSINEGIGCGLIFNGRLYRGAGGNAGE 240 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 GH +D G C+CGN GC ET+AS + I + Q + + + + + + A Sbjct: 241 FGHIIIDSDGPLCHCGNSGCWETLASENHIQKEYQELTGE--------ENVEKNEIYRKA 292 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 + G+ A ++ ++G LA +VN +P+ I++G + +A ++ + ++++ L Sbjct: 293 IEGEDRALSVVKQAAHNIGLGLANIVNSLSPRLIVLGGGIIEADTLIIDTVQSILKEKCL 352 Query: 365 PAYSQHISVESTQFSNQGTMAG-AALVKDA 393 + +E T+ + + G A+ V + Sbjct: 353 LLSYDKVDIEFTRLKDLACLYGLASYVFNK 382 >UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D168_HALOH Length = 396 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 201/401 (50%), Gaps = 12/401 (2%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + P K N + +I + GP+SR D+S+ L P ++T ++ +++E +LV Sbjct: 1 MKKVYPVSYKLQKGMNEKLILNIIRRDGPISRADISKKTNLTPPTVTNVINKLVEENLVL 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E + E+ GRP + + EA++ + +S ++ L D K+ + ++ + Sbjct: 61 EDIMGESSG-GRPPQLVRLNPEAFNIVVTHVSSNKLTGYLTDAYLKVSKKVVYDIERLEK 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +LD + ID+ + + ++ + + G + G+ P + +P+ + Sbjct: 120 QKILDLMFEVIDELIKSAS---QEVPALGVVVHGPVKAREGVSVFAPNI-GWRNVPIKKL 175 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 +++ PV +++D+ A + E +G+ +G +++ + I + +G+ +I DG + S S Sbjct: 176 VQERFKKPVCVENDVRAMGLGEFYYGSGKGVDNLVFLKIGYGIGSAIIFDGKIFRGISDS 235 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPL 295 E GHT VD G RC CGN+GCLE ++S ++I++ L S++ + + Sbjct: 236 AGEFGHTTVDIGGPRCNCGNYGCLEALSSENAIVKAVVKDLKAGRMSLVRELCDGNLEKV 295 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 T D + +AA RGD L+ ++ ++G +A ++N NP+ I+IG + KA + +I Sbjct: 296 TPDHVYRAADRGDELSLSVLQEAARYLGIGIANIINSINPKVIVIGGGIIKARLHIEEII 355 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMY 395 + S+ ++AL Q + ++ + GT+ GA +V D + Sbjct: 356 NKSVEERALTNAYQSCDIVFSELGDIGTLKGAGNIVMDEIL 396 >UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP1_ALIAD Length = 409 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 168/396 (42%), Gaps = 13/396 (3%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + +K+ N V I P+SR +S L A+++ + E++ LV E+ Sbjct: 13 EKTADQALMKEINKSIVLNRIRFHSPISRSQISSETGLNKATVSALTDELIRDGLVLEVG 72 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLP 123 + GR + L+ A + + + + +A+ D +++ + + L Sbjct: 73 QGRS-RVGRRPIMLLFNASAGSVIGVELGVEYVRVAITDFAARALSVREEPLPRNLGAEE 131 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +L+R+ + I Q + + I + +PG++D G+V R P + + +PL +E Sbjct: 132 VLERLRASIAQALAEAPESRYGVIGIGVGVPGLVDFARGVVLRAPHIK-WENIPLKAMME 190 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G PV + ++ +A + E L+GA+ ++ + +G G++ L+ Sbjct: 191 SWFGKPVLVDNEANAGALGEKLYGAATHVSSLVYISAGTGIGTGIVIGDELIRGADGVAG 250 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E GH +D +G+ C CGN GC E AS +++ + L G+ L D + Sbjct: 251 EFGHMSIDLHGETCPCGNVGCWELYASERALVAAY---------AKLTGEELDFDGVLAR 301 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 D A VG ++G +VN NP +++G+ L++ ++ + +I + Sbjct: 302 FRASDPAALQAFQTVGRYLGAGAVNLVNGLNPAMMILGNRLAEGGRMVTDAMQQAILSRC 361 Query: 364 LPAYSQHISVESTQFSNQGTMAG-AALVKDAMYNGS 398 L + + V+ + G AALV + G Sbjct: 362 LVSSYAKVVVQVSALGRDACAIGSAALVLHDFFAGP 397 >UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E382_DICTD Length = 400 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 101/388 (26%), Positives = 188/388 (48%), Gaps = 12/388 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 +P +I ++ TN V I ++GP+SR D+S++ +L+P++++ IV ++ +V+E Sbjct: 2 KPVNIKSMRMTNVSLVLDTIRRMGPISRYDISKITKLSPSAVSSIVENLINVGIVKET-P 60 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 + GR + L + ++ + + I + +I L LS K++ + L D +L Sbjct: 61 AKVTKVGRRPIELTLNETGYYPIGIEIEKDKITGILMALSGKILKSKVINLNTTDVNEVL 120 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 +++ K E + + + +PG I+ + G+ P + + + E L Q+ Sbjct: 121 GSVVNVYRSLIEDVNK--EEIIGVGVAVPGTINRKEGVCIFSPNL-GWRNINIKEYLGQY 177 Query: 186 T-GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 P++I+H I A T E +GA G ++I V + V AG + DG L + E Sbjct: 178 IKDYPLFIEHIIKAVTYGEMWYGAGIGKDNIICVRVGSGVSAGFVLDGKLYRGPNDRAGE 237 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT----VDSL 300 GHT ++ GK+C CG++GCLET S + E + ++ + ++ + T +D + Sbjct: 238 FGHTVIERNGKKCKCGSYGCLETYVSTQVLYEKVFEGIQKNAYTKVNIENKTKDEILDEI 297 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 +A GD +I +G ++G +A ++NLFNP+ I+I LSKA ++L + + Sbjct: 298 IEAGKSGDRFILNIFEEMGTYLGIGIANLINLFNPEIIIIAGGLSKAGELLLEPVRRIVN 357 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAA 388 A P + T+ GAA Sbjct: 358 LHAFPPIP---EIMVTKLGALTGPIGAA 382 >UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKJ0_BACSK Length = 391 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 94/395 (23%), Positives = 185/395 (46%), Gaps = 11/395 (2%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + +K N V+RLI + P+SR D+++ + L A+++ +V +++E V E+ ++ Sbjct: 5 DHETMKDMNKSTVFRLIQRHAPISRADIAKRSGLNKATVSALVAQLIENQFVYEIGTGDS 64 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 GR V L A H +S+ I + + DLS K + + L K+ +L Sbjct: 65 SG-GRKPVLLYCNDRASHAISVDIGVNGLLGIITDLSGKTIAKREMALTSKEFNIVLANT 123 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 + I+Q + I ++PGI+D++ G + P + + + ALE + Sbjct: 124 EAIIEQLIHEAPPSPYGICGITASVPGIVDSK-GNILLAPNL-GWENVDIKTALEHTFKL 181 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PV + ++ +A + E +G + + + + +G G I DG L + E GH Sbjct: 182 PVVVINEANAGALGEKQYGVGKPYSAISYISVSIGIGTGQIIDGKLFTGANGFAGEFGHM 241 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 +D +GK+C CGN GC E +S ++LE+A + +N+ + ++ + + AA G+ Sbjct: 242 SIDRHGKQCRCGNQGCWELYSSEKALLEIAAINMNR--------RSISFEEVLAAAETGN 293 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 A D VG +G L M++ NP+ I+IG+ +K + I +++ + Y Sbjct: 294 QAALDAFATVGHSLGIGLVSMIHSMNPEAIIIGNRFAKLKPYIQIPIEETLAKHLPSYYQ 353 Query: 369 QHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRL 403 + + + ++ + + G +L+ + + I L Sbjct: 354 KAVKLLFSELGQEAPLLGGSLLATSQFFNRHRIHL 388 >UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM15_9FIRM Length = 412 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 103/395 (26%), Positives = 181/395 (45%), Gaps = 9/395 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 N + +K+ N V LI + GP+ R +L+++ L P +IT I+RE+LE LV E Sbjct: 2 TNNGANSKYVKKRNRITVLNLIKEHGPIGRQELAQITGLTPPAITGIIRELLELGLVHED 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GR V L ++A + + + ++RGE + + DL + L + + Sbjct: 62 GYGES-RGGRRPVKLTFNSKAGYVIGVEVTRGETTVGVADLMNDPTDIARYPLDMSEPAA 120 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY-EDVKEMPLGEAL 182 L + + + K+ + I PG++ + G V R + PL E L Sbjct: 121 GLASLAELLRRIMNDEGKQGRSFVGVGIAFPGLVQAKTGTVQRSVNLGPAWRSYPLQEKL 180 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E G+PV+I+++ +A +AE FG RD++ V + + AGVI D ++ Sbjct: 181 EDVLGLPVFIENNSNACVLAERWFGGGVCCRDLVYVNLGEGISAGVILDDRIVQGFQGYA 240 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLT 296 EIGH +D G +C CGNHGCLE + SV ++++ A+ L + Sbjct: 241 GEIGHIVIDESGPQCNCGNHGCLEALCSVPALIKQARRDLPGLADGDPLKARWQSSGDIE 300 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + L A G A +++ +GR +A ++NL+NP+ + +G L+ A P++ Sbjct: 301 LADLLAVAQPG-TYANALLSRAVHWIGRAVAAVINLYNPEAVFLGGQLAGAMARFEPILR 359 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 D++ A P + + + + GA + Sbjct: 360 DAVAAHAFPEIASATRIAFSALGEYPGVIGACALA 394 >UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZW2_HALOH Length = 383 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 93/384 (24%), Positives = 184/384 (47%), Gaps = 10/384 (2%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +K+ N + LI+ GP+SR +++ + L PA+++ IV+++L+ LV+E E+ G Sbjct: 1 MKKINQQTILELINNKGPISRAEIAEITGLTPATVSNIVKDLLKMDLVRETRQGES-RGG 59 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R + L V E + + L GEI L +L+ K++ +++ L ++ Sbjct: 60 RKPILLEVNPEGAYVIGLEWGIGEIKAVLLNLNKKVIKTIKKQVDSFKPEWFLKTTVTIF 119 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 ++ + + +++ + I + G++D + G+ P + + + +G+ L+Q +P+ + Sbjct: 120 EE-VTGYVENPDKVFGLGIGIHGLVDPDEGVSLYAPHF-GWENIKIGKLLKQELQIPIML 177 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +D+ +AE G + I + +G+ ++ G LL+ E GH + Sbjct: 178 DNDVRMMALAEKW----EGRDNFIFINTGPGIGSAIVIKGELLYGRDFGAGEFGHMTIVE 233 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CGN GC+E + SV++++ L + +S H + L A A Sbjct: 234 DGALCSCGNRGCIEALVSVNNLVREYNDSLPEHIS--FHDIKREWNLLIDLAREEKSRAY 291 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 II G ++G+ + +VNL NP+ ++IG A D++FPVI + + + AL S+ + Sbjct: 292 SIIEKAGVYLGKGIGNVVNLLNPEAVVIGGDFLLARDLIFPVIKEQVLETALKVPSRDLE 351 Query: 373 VESTQFSNQGTMAGAAL-VKDAMY 395 + T F + GA V ++ Sbjct: 352 ITGTAFGEKVGAIGAGTRVLQEIF 375 >UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY97_9BACL Length = 399 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 109/382 (28%), Positives = 186/382 (48%), Gaps = 11/382 (2%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 G IK+ N V I Q P+SR D+S L A+++ +V E++++HLV E+ Sbjct: 4 TGDQQLIKKMNKTIVLDTIRQRQPLSRADISAAIGLNKATVSSLVSELIDSHLVTEIGPG 63 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 E+ GR L+ A + + + I ++ L DL ++ E+ L+ +L+ Sbjct: 64 ESSG-GRKPTLLLFNRSAGYAIGIDIRVNDLLAVLVDLEGHVLQEKLVPLSDFSPEHVLE 122 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 +I I QF + + + I I +PG++D + V P D ++ L E L Sbjct: 123 QIRQTIRQFKEQLPESPYGIVGIGIGVPGLVD-DKSRVISAPNL-DWNKVELYEPLASEF 180 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 G ++I ++ +A + E LFGA R A+++I + I +G+G+I G L S+ E+G Sbjct: 181 GANLHIDNEANAGAIGEKLFGAGREAQNLIYLSIGIGIGSGIIVGGELYRGTSNFSGEVG 240 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 H + G C CGN GC ET+AS ++L+ A ++ + Q A Sbjct: 241 HMTIAENGPLCRCGNRGCWETLASEKALLDRAAKLWGDKHP--------DLEEMIQLAHS 292 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 GD A +++ +GA +G LA +VN+ NP+ I+IG+ LS A D++ + +I ++L Sbjct: 293 GDSRAIELLNEIGAQLGVGLANLVNILNPELIVIGNRLSLAGDLIQDAMLRTIENRSLSY 352 Query: 367 YSQHISVESTQFSNQGTMAGAA 388 + + V + T GAA Sbjct: 353 HRKKSGVAFANLGIRSTALGAA 374 >UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIH3_THET1 Length = 418 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 188/400 (47%), Gaps = 5/400 (1%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M G +++ N V ++ + P+SR L+ + L A+++ ++ E+ A LV Sbjct: 1 MPTGKHTGDQALVRELNLSIVLNVLREHSPLSRASLAAITGLNRATVSSLINELTRAGLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALK 119 E+ I+ + GRP L ++ A + + + I LA+ D SS+++ + EL K Sbjct: 61 WEVGIEATDDVGRPGRLLELDPHAGRIIGMEVGVDFIALAIADFSSQIIWKRWVELTDGK 120 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +L I + K+ ++ + + +PG++D G + P +++P+ Sbjct: 121 SPEEVLGLAADLIQEGVELTDKEYGQVLGLGVGVPGLVDVPRGHLLFAPNL-GWRDVPVR 179 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 E+ VY++++ + + E+ FG +RG V+ + VG G++ G ++ Sbjct: 180 SMFEERFPFTVYVENEANMAALGESYFGVARGYNCVLYISAGVGVGGGIVLGGQIMRGAM 239 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQ--SMSSMLHGQPLTV 297 E+GH + G C CGN GC ET+AS +++ L + S LTV Sbjct: 240 GFSGEVGHMTMVEDGPICGCGNRGCWETLASESALVRRMLEALRRAGETPSWARDDHLTV 299 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 ++ +AA GD LA+ ++ V VG +A +VN+ NP+ +++G LS D++ P I + Sbjct: 300 PTVLEAARAGDRLARGVLNEVARDVGLGIANLVNVLNPEIVVLGGMLSMGGDLMLPTIRE 359 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYN 396 ++ + L Q + +E + + G A V D + + Sbjct: 360 TLEHRGLRWLVQPLRLELAALGRESCVLGGIATVYDRVLS 399 >UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YIH1_EXIS2 Length = 386 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 94/395 (23%), Positives = 180/395 (45%), Gaps = 13/395 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + P + ++ N V RLI P+SR++L++ +L +++ IV E++ LV Sbjct: 1 MVKEMPRNSKWMRSYNRALVLRLIRMHQPISRVELAQQTKLTKPTVSNIVGELIADQLVM 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E E+ + N GR + L + + + + + + + DLS + E + Sbjct: 61 ERELGVS-NGGRKPILLELVAKEQYVIGIDATSHRFIGVIADLSGNTIHEVETMGKFDTN 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L++ ++ Q ++ + I I++ G+++ E G++ P + + ++ L E Sbjct: 120 EELMEAVVQLCQQLI-DATDQVGTIHGIGISVHGMVNPETGVILFAPRFH-LHDVALKEH 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LEQ PV+I++D+ A E LFG G + +G + DG L+ + Sbjct: 178 LEQRFAYPVFIENDVRALASFELLFGEGVGVDQFFYLYAGEGIGGAYVLDGKLIDGENHI 237 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+GH ++D G C CGN GCLE +A ++L + Q T+ L Sbjct: 238 TGEVGHMRLDLDGPICSCGNRGCLEALAGEKALLRDF---------EAVDPQVKTLTELR 288 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + D A G ++G + ++L NP++IL+G P+ + A + I + + Sbjct: 289 RRLTDQDPHATAAYHRAGEYIGIGVLNTIHLINPKRILLGGPMFELAPSIVDQIKERVEH 348 Query: 362 QALPAYSQHISVESTQFSN-QGTMAGAALVKDAMY 395 AL S+ V+ +S QG ++ AAL ++++ Sbjct: 349 TALTTASRETDVKMVPWSEKQGALSAAALATNSIF 383 >UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788127 Length = 390 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 179/400 (44%), Gaps = 14/400 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 N G +K+ N + I Q PVSR +S+L L A+++ +V+E+ HLVQE+ Sbjct: 2 TNITGDQALVKKINTSIILDTIRQHAPVSRAKVSKLTGLNKATVSNLVQELCSNHLVQEI 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GR L+ +A + + + + +I L DL +++ EE L Sbjct: 62 GPGESSG-GRKPQLLLFNGQAGYAIGVELRVKQITAVLTDLEGRILAEEDTALEAHGVES 120 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + ++ I + + I + +PG++D + G V P +PL E LE Sbjct: 121 VTRLMVGMIHGLMRQAPPSPYGIIGIGVGVPGMVDGD-GTVLFAPNL-GWDMVPLQEQLE 178 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G+PV I ++ +A E FGA R AR ++ + +G+G+I +G L Sbjct: 179 LELGLPVTIDNEANAGAQGELRFGAGRDARHLLYISAGSGIGSGIIINGELYKGARGYAG 238 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E GH ++ G+ C CGN GC E AS S ++L + + L Sbjct: 239 ESGHMSIEAEGRECSCGNRGCWELYASEKS---------YDGKDAVLPSRRTS--ELVHH 287 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A G +G ++G + +VN FNPQ ++IG PLS A + + + Q+ Sbjct: 288 AELGHKDTIRHFEELGRYLGIGITNLVNGFNPQSVIIGGPLSDARAWIEETLQQVVAQRT 347 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRL 403 LP + + + + + ++ TM GAA + + G + + + Sbjct: 348 LPYHRERMEIRFAELGSRSTMIGAAYSAISQFLGPVRVSM 387 >UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n=1 Tax=Oceanobacillus iheyensis RepID=Q8EL07_OCEIH Length = 402 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 83/400 (20%), Positives = 188/400 (47%), Gaps = 10/400 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 ++ G++ I++ N + I + GP+SR D+++ ++P ++T V E++E +V E Sbjct: 1 MSRTGNLKLIQELNRSLILDTIRKKGPISRSDIAKKLTISPTTVTTAVSELIEGKIVYED 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 + + N GR V L + + + I+ +I +A +L K+ + + + Sbjct: 61 GVGNS-NGGRKPVLLRFNPDTHSIIGVSITNSKIKIAEMNLEGKVKKKSVEITNNEQGED 119 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 ++ +I + F + L+ ++I PGI+++E G + + +PL + +E Sbjct: 120 IIKLVIETLKTFIKNEKVNLDYCEGVSIITPGIVNSEEGCISYNSHL-GLYNIPLKKMVE 178 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G+P ++++D++A+ AE+ FG+ ++ + I +G+G++ + + S Sbjct: 179 STIGLPTFLENDVNAFVSAESYFGSYNHYNSILFLTIGDGIGSGIMINDSIYKGYKGSAG 238 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSIL-ELAQLRLNQSMSSMLHGQ------PLT 296 EIGHT V P G +C CGN GC+E + SI + + + +++ +T Sbjct: 239 EIGHTTVVPGGIKCKCGNSGCVENYVNWPSIHSRIVSAIITKGRDTLIKNYIGNDFTKIT 298 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 D A D L K+I+ + ++ + ++ +P+ I++ + + + Sbjct: 299 PDMFVLAIRENDELCKEIMDDMVNYLSITIVNAIHTLSPELIILSGAIIHGNQVFIDQLQ 358 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMY 395 + ++++ LP + ++ +ST + GAA ++ + Sbjct: 359 EEVKKRLLPIIREDVNFQSTSLGPDFDLLGAASVILQGRF 398 >UniRef50_Q9K992 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9K992_BACHD Length = 386 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 97/391 (24%), Positives = 191/391 (48%), Gaps = 13/391 (3%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 G IKQ N V + I + P+SR +S L +++ +V E++ +LV E+ Sbjct: 4 TGDQRFIKQMNKQIVLQTIRKEAPLSRAQVSLTTGLNKGTVSSLVAELIADNLVYEVGPG 63 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 E+ GR V L+ + +A + + + I+ + L DL ++ + L +K+ + Sbjct: 64 ESSG-GRRPVMLMFQNKAAYAIGINIAVNYLSGVLTDLVGNVIEKVEWSLHVKEFDHVNQ 122 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 +++ I+Q + I + +PGI++ E G V P + +E+PL + LE+H Sbjct: 123 QMVQLIEQLMKAAPPSTYGIIGIGVAVPGIVN-EEGDVLFAPNL-NWREIPLKKQLEEHF 180 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 +P+ ++++ +A + E +FG + + ++I I +G+G+I L E+G Sbjct: 181 QLPIAVENEANAGALGEKVFGKGKESENMIFFSIGIGIGSGIIFGNSLYRGKGGYSGEVG 240 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 H ++ G C CGN GC E AS ++L+ L+ + LT+D L + A + Sbjct: 241 HMSIETNGPLCTCGNKGCWELFASEKAVLQQ---------GEALYEEVLTLDDLFEKARK 291 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 G+ A D+ +G ++G +A M+N NP+ +++G+ + K L + ++ +AL Sbjct: 292 GEQTAIDLFQKIGVYLGTGIANMINALNPELVVVGNRMVKGRPWLEHSLKQTVADRALSF 351 Query: 367 YSQHISVESTQFSNQGTMAGAA-LVKDAMYN 396 +++ + VE + + G G + L+ D+ Sbjct: 352 HAEQVLVEFSDLNENGISLGVSYLLIDSFLE 382 >UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n=3 Tax=Bacillaceae RepID=Q8ELU2_OCEIH Length = 400 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 178/394 (45%), Gaps = 8/394 (2%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + N+ + +KQ N V+ I Q P+SR D+++ L ++++ +V E++ L+ Sbjct: 1 MKINRTWNQYVVKQENKSLVFNTIRQNSPISRADIAQQLGLNKSTVSSLVSELINEELIG 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E+ E+ GR V L A + + + + I L DL ++ +E Sbjct: 61 EVGPGESSG-GRRPVMLFFNNTAGYSIGIDLGVNYILGVLTDLQGNILEQEQVTFDNLTY 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +L + I + K + I + +PGI++ E I+ P + + + L E Sbjct: 120 EEILVHLNEVIQKLITMTSKSPYGVIGIGVAVPGIVNKEEKILL-APNL-NWRNISLKEE 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE +PV I+++ +A E FG + ++++ V + +G G++ + L + Sbjct: 178 LENQFNIPVIIENEANAGAYGEVQFGIGKENKEIVYVSVGVGIGVGLVLNNQLYKGNNGF 237 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+GH +D +G +C CG+ GC E AS ++L+LA+ + +D + Sbjct: 238 SGEMGHMTIDAHGAKCSCGSEGCWELYASEKALLQLAKRNKIYTTDPY-----DLLDHMI 292 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 Q A D +A + + ++ + ++N FNP++++IG+ +S A + + DSI Sbjct: 293 QLAKNNDSVALEAFNEISKYLAIGINNIINSFNPEQVIIGNRMSAAKKWIEKPLLDSINN 352 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 Q+L + + ++ + + G A + Sbjct: 353 QSLWFSQKDLKIDFSSLNTHSNALGMAAFSSERF 386 >UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_9ACTN Length = 389 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 187/387 (48%), Gaps = 14/387 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 PG +++ N + + Q G +++++L+ + L+PA+++ IV+E+ A ++ Sbjct: 2 TPGSQTSLREANRARIVSAVQQRGSLTQVELAGVTGLSPATVSNIVKELTGAGVLH---T 58 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL- 124 GR A + + + + +A+ D++ ++V ++ L Sbjct: 59 SPTSRSGRRAQQVTLARNLGLVGGIHFGSRSLRVAVADVAHRIVADQRMPLPPDHRADAG 118 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L+R + + L+ + ++ + +P +D G + + + + E LE+ Sbjct: 119 LERAALLLTEMVESVDSSLQEVLAVGVGVPAPVDVRTGQISTIGVLRGWDGICVPEVLER 178 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 G+PVY+ ++ + +AE FGA+RG + V+ + I H VG G++ +G + H S + E Sbjct: 179 RLGLPVYVDNEANLGALAEVRFGAARGRQHVVYLRISHGVGGGIVLNGEVFHGRSGTAGE 238 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGH +D G C CGN GCLET +L SM + HG LT+ + A Sbjct: 239 IGHVTIDDNGPICRCGNRGCLETFVGAPVLL---------SMLTASHGH-LTLPDVIARA 288 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 +GD + +I+ G ++G A + NLF+P+ +++G L++A IL + + Q+ + Sbjct: 289 QQGDPGCRRVISDAGRYLGVAAASVCNLFDPELVVVGGRLAEAGPILMDPLRTVLAQRTV 348 Query: 365 PAYSQHISVESTQFSNQGTMAGAALVK 391 P+ + + V +++ + + GA +V Sbjct: 349 PSTAGPVEVVASELGSAAEVRGALVVA 375 >UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178870E Length = 413 Score = 366 bits (940), Expect = 1e-99, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 177/401 (44%), Gaps = 8/401 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + + +K N + L+ G +++ +++ L ++ + E+++ L+ Sbjct: 1 MNSSVGKNNRHVKNLNRIGIIALLRDYGSLTKAEIAAKMNLTFTAVNNLTDELMKDRLIA 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKD 120 E + +RGR L + + + + + IS + A+ +L K ++++ + Sbjct: 61 EAGFYDESSRGRKPKLLSLNSGDIYTVGVHISASSVRAAVINLQGKAMMDKYSPFEDNAN 120 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 +++ IIS I K R+ I + PG +D G + P + ++ L Sbjct: 121 RGSVVNVIISTIQAVLDESGLK-SRIIGIGVGAPGPLDPVQGKILSPPNLPGLHQVRLKG 179 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 +E++T +P I+ D + + E +G R ++ V D +G+G+I + + Sbjct: 180 LIEENTELPTQIEKDANVMALGELWYGNGRHFNHLVYVDADIGIGSGLIFNQKIYQGCPF 239 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQP 294 EIGH +D G RC CGN GCLE IAS +I+ L + S L + Sbjct: 240 GAGEIGHCTIDIDGPRCNCGNTGCLEAIASGMAIVRRVGEELRRGAGSSLQSSFDGNDHG 299 Query: 295 LTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPV 354 L + + A + GD LA +++ +VG LA ++NL P+ I+IG L+ F Sbjct: 300 LDITDVITAGVDGDPLAANMLNESARYVGISLANVINLLTPETIIIGGVLANRYPDYFTY 359 Query: 355 ISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 + ++ ++L ++ I ++ ++ + GA + Y Sbjct: 360 VRETSYNRSLSSFHDKIMLQPSELGEYAGVIGAGTIVFEKY 400 >UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D498_GEOSW Length = 397 Score = 365 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 97/398 (24%), Positives = 182/398 (45%), Gaps = 10/398 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G+I +K+ N V +LI + +SR +++++ L A+++ +V E++ H V E I Sbjct: 3 RTGNIGLVKKINKQIVLKLIREKNNISRAEIAKITGLNKATVSALVDELISEHFVSESGI 62 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPL 124 + GR + L A + + + I+ L DL+++++ E+ A + + Sbjct: 63 GVSTG-GRRPLMLRFNEAAGSLIGIELGVNYIYAVLTDLNAEIIWEKMCPFRANEKQETI 121 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++++I+ I + + + I I +PGI+D E G+V P + L L++ Sbjct: 122 IEKMIAMIHEAIRQAPTTPYGIMGIGIGVPGIVDAEEGLVVFAPNLH-WDHVSLSSILQK 180 Query: 185 HT-GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 P+ I+++ + E FGA + + + V +GAGVI L Sbjct: 181 QWPNYPIIIENEAKLAALGEKWFGAGKEFANFVYVSAGIGIGAGVIIHNQLYRGIDGIAG 240 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 EIGH +D +G RC CGN+GC E AS I + + SML G +V+ + Sbjct: 241 EIGHHVIDVHGFRCSCGNNGCWEMYASEKYIQRRLE---QEHYHSMLEG--FSVEKVRAL 295 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD I+ VG ++G + ++ +NP+ +++GS + KA + + + ++ Sbjct: 296 AESGDKQMAQILAEVGHYLGIGILHIIYAYNPEAVIVGSTIGKAGKWVLEPAREEVEKRI 355 Query: 364 LPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLL 400 L + +Q + GA A V + + S L Sbjct: 356 LVKNGNGPFIIPSQLLEKSCAIGAVASVLEKVVMPSEL 393 >UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID=Q724N5_LISMF Length = 404 Score = 364 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 174/387 (44%), Gaps = 8/387 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G+ D IK N V LI + G ++R ++++ +++T I+ ++ + ++ E Sbjct: 5 RKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGIILE-GA 63 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLPL 124 + + GR A + + +S+++ ++ AL DL+++++ S + K Sbjct: 64 ETSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDLNAEIMENTSIPFSSEKKPEEA 123 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++ I ++ + + + L + I + G+++ G V R + + L L Sbjct: 124 IELIAKNVKKMCE--NRDMNHLLGVGIAISGLVNRRKGTVIRST-MLGWENVALEAMLHA 180 Query: 185 HT-GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + +PVY+ +I+ +T+AE G + + + V + +G V+ + + + Sbjct: 181 YFPDIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVGAGLGLSVVINRQIYYGAQGGAG 240 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E GHT + P G +C+CG GCLE AS + +S L + D + ++ Sbjct: 241 EFGHTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGEELKEAYPTSEL--KDFHFDKVAKS 298 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD +A +++ +G ++G + ++N FNP+K++I D+ I + Q Sbjct: 299 ARAGDEMATELMGKMGEYLGYGIRNIINTFNPEKVIIVGEGLHHRDLFLTKIDEIASQNF 358 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALV 390 + +T + + GAAL+ Sbjct: 359 FSGAGFETEITTTSLEDPAWLQGAALL 385 >UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID=A8FE34_BACP2 Length = 386 Score = 363 bits (933), Expect = 6e-99, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 174/394 (44%), Gaps = 14/394 (3%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 + +K+ N + + I Q P+SR LS L ++++ V +++ LV E+ E Sbjct: 4 ADQNFVKKINQKLLLKEILQHAPISRAKLSERTGLNKSTVSSQVSTLMKEQLVYEIGQGE 63 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 + GR V L+ A + + + + L DL ++ EE L + Sbjct: 64 SSG-GRRPVLLMFNKRAGCSIGIDVGVDYVNGILTDLEGSILHEEQINLPSSAPDVTIRI 122 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 + I Q + L I + +PG++D + IV + K + L +AL+ Sbjct: 123 LTELIQQLMSQIPSSPYGLIGIGLCIPGLVDADQQIVFTP--HSKWKNVDLKKALQDAFQ 180 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 VPV+I+++ +A E +FGA++ +I I +G G+I + HL E+GH Sbjct: 181 VPVFIENEANAGAYGEKIFGAAKHYDHLIYASIGTGIGIGIIINHHLYRGAYGFSGEMGH 240 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 +D G C CGN GC E AS ++ + Q + +P++ + Q A Sbjct: 241 MTIDFNGPTCSCGNRGCWELYASEKALFQSLQT----------NEKPISHQDVEQLATLN 290 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D+ + + G ++G L +++ FNPQ I++ + + ++ + VI + + + + Sbjct: 291 DMKTLNALRNFGFYLGVGLTNVLHTFNPQAIILRNKVIESQPTVLRVIQEEVSSRIDTQF 350 Query: 368 SQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLL 400 S H+ + + + + G +LV +A + L Sbjct: 351 SSHVELLPSSLGHNAPVLGMTSLVIEAFLQDATL 384 >UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA78_BREBN Length = 401 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 179/395 (45%), Gaps = 10/395 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + G + I++ N + I Q GP+SR D+++ ++P ++T V E++ +V E Sbjct: 1 MRRTGDLKLIQELNRFIILDTIRQFGPISRSDIAKKQGISPTTVTSAVNELIRDGMVAED 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GR + + + + + I+ I +A +L + ++ + Sbjct: 61 GTGESKG-GRKPIMVRFCPDGKFLIGVSITNTAITIAEMNLEAATKQKKIYPVKAGLVSD 119 Query: 124 LLDR-IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 L+ + ++ I F + R I+I PGI+D +G++ + ++PL + Sbjct: 120 LIIQYVLDSIGDFLQSVD-DVSRCLGISIIAPGIVDAASGVIRFNSKLR-LHDVPLKDMA 177 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E+ G+ ++ +D +A +AE FG A +++ V + VG+G++ +G + Sbjct: 178 EERFGLNTWLDNDANAIALAEKNFGGGLNADNLLFVTVGEGVGSGLVVNGSIFRGSRGGA 237 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLT 296 E GHT VD G RC CGN GCLE + +I + + +++ +T Sbjct: 238 GEFGHTTVDRSGMRCDCGNVGCLENYVAWPAIYSGILSAVTRGKETLVMDLADGDMTRIT 297 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 D QA +GD + +DI+ + +++ + +VNLFNP I++G + + +LF I Sbjct: 298 FDVFRQALHQGDQVCQDIVDEIASYMSIGIVNLVNLFNPSLIILGGEMIRDNQVLFERIQ 357 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 + QA+ + + T + AA V Sbjct: 358 KQVMAQAMGTMVEGLEFRPTVLGADFEVKAAAAVL 392 >UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I1T3_CLOCE Length = 399 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 179/391 (45%), Gaps = 4/391 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G+ +K+ N ++ LI VS+ L+++ L+P + IV +L+ ++ Sbjct: 1 MRMGKAGNNKLLKEINETSLLELIRINKQVSKAGLAQITGLSPTACGTIVTNLLDKGYIR 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KD 120 E I + GR + + ++ + + I I L D++ ++ ++ + Sbjct: 61 EAGIGTSKG-GRRPILYELTPGSYFSIGVDIDIDYIRFILMDITGQVEFKDRISCDFARA 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + + I + H + +RL + +++PG+ID + P + + L Sbjct: 120 ASESIRLMEEKISEIIKIHNIEHDRLLGVGVSVPGMIDNLTHEIIFAPNL-GWERVNLEH 178 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 +++ P+Y+ ++ + E G RD + + + +G+ + G+L Sbjct: 179 MMDRIGDFPIYVDNEAMCSALCENWIGCCMDERDFVCINMKSGIGSSIFAAGNLYRGCCG 238 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-QPLTVDS 299 S EIGH VD G RC CGN+GCLE + S S++E AQ + Q + + + +TVD Sbjct: 239 SAGEIGHITVDQNGPRCACGNYGCLEALVSARSMVEKAQKLVRQGLITDFEDIEAITVDE 298 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + + A G+ A+ I+ ++G +A ++N NP KI++G L+K ++ + + Sbjct: 299 IFRLAREGNESARVILVEAAGYLGLAIANLINTVNPSKIVLGKELAKFSEDIVDHLKSIA 358 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALV 390 +AL + + V ++ + GAA++ Sbjct: 359 SAKALKYPASRVQVVVSKIGEDTSALGAAII 389 >UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3682C Length = 404 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 97/401 (24%), Positives = 188/401 (46%), Gaps = 10/401 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M +N + Q+K N V I + G ++ L+ + L +I KI+ E+ E +L+ Sbjct: 1 MADQN---NQVQLKNFNRRTVLGYIRRNGTATKAGLASVTGLTFMAIKKILAELQELNLI 57 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA--L 118 ++ E+G GR AV V+ + + + I++ +AL +L +++ E + Sbjct: 58 RD-GQMESGGMGRKAVSYVINENYRYTIGIHINKFITGIALLNLRGQILAIERYSMDKEF 116 Query: 119 KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 ++ + + ++ + K E + I + PG +D E+G++ P + +PL Sbjct: 117 ENQNDFVTMLAEAVELVIEKSGVKREDILGIGVGAPGPLDCESGVILTPPNMPMLDYLPL 176 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 E LE TG PV++ D + AE + +R ++ V +D +G+G+I DG L Sbjct: 177 KETLEGRTGFPVFLNKDTNVIAFAEYWYRNNRDCSNLAYVEVDMGIGSGLIIDGKLNVGA 236 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH--GQPLT 296 + E GH +D G C CGN GCLE ++S ++L + +L L+ LT Sbjct: 237 NCIAGEFGHITIDINGPLCNCGNRGCLEAMSSGIAVLRMLGEQLENQKDHPLYHKRNALT 296 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 ++ + + + DLL I+ +VG ++ ++N F+P+ I++G L + + F ++ Sbjct: 297 IEDVFEMTDKKDLLTISILNRSAFYVGVAVSNLINTFDPEMIILGGILIQKYPMYFNIVQ 356 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYN 396 D Q+ + ++ + + + GA +V D +N Sbjct: 357 DVANQRKVKGAKEN-YMAVSVLGENAGVIGAGEIVTDHFFN 396 >UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus licheniformis RepID=Q65DK2_BACLD Length = 387 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 164/392 (41%), Gaps = 14/392 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 +K+ N ++ I + GPVSR LS + L A+++ V +L+ ++ E Sbjct: 2 NTADQALVKKMNKALIFEQIIENGPVSRAKLSEITGLNKATVSSQVSSLLQKDIIYETGP 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 E+ GR V L +A + + + + I +AL DL L+ + + L +D Sbjct: 62 GESSG-GRRPVMLKFNRKAGYAVGVDVGTNYIIVALTDLEGHLIEQFERTLDEEDIQATE 120 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 + +I + LT I + +PG++D E +V + + +P+ E LE+ Sbjct: 121 EALIELTGLAVDKIPPSPFGLTGIGVCVPGLVDNERHVVFTP--NKPIHLIPIKEKLEER 178 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 GVP+ I+++ +A + E +G + V I+ +G G++ +G L E Sbjct: 179 FGVPILIENEANAGAVGEKEYGEGGQLEHAVFVSINTGIGLGILMNGKLFRGVQGFSGEA 238 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH + G C CGN GC E AS ++ + +++ + A Sbjct: 239 GHMSIHFDGPLCRCGNRGCWELYASEKAVFSHYAANSGAQL----------YETVKELAD 288 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 RGD + G H+G L ++ NP I++ + + ++ + I +I ++ Sbjct: 289 RGDPGMMETFERFGFHIGIGLLNILKTLNPDTIILRNTIVESYPSIVDAIKKTIASRSAA 348 Query: 366 AYSQHISVESTQFSNQGTMAG-AALVKDAMYN 396 + ++ + + G ++LV + Sbjct: 349 EALSNYHLKISTLGRTASALGMSSLVTERFLE 380 >UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETA5_9FIRM Length = 406 Score = 360 bits (925), Expect = 5e-98, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 173/376 (46%), Gaps = 9/376 (2%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 + Q N +V +I P+++ ++R L+ ++ KI E HL++ E+ N G Sbjct: 1 MAQLNRKSVIDIIRTQSPINKAQIARQTGLSIPTVMKITDEFERNHLIRVNGKGES-NGG 59 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISH 131 + L + +A++ + + + R I + DLS KL+V+ES + L++R+I Sbjct: 60 KRPELLEIIPDAYYIIGVDVGRSRIKAIIMDLSGKLIVKESIKTGRTVPSQQLIERLIYL 119 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 I Q + + + I +PG++DTENG V P + + + L + +E H Sbjct: 120 IHQVVQESNISVSQFLGLGIGMPGLLDTENGTVLFSPDFH-WENVELVKPIEDHFPFYTI 178 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 +++ A M E FGA + I + + H +G+ ++ +G S EIGH ++ Sbjct: 179 LENSNRAMAMGEHWFGAGVESSYFICLNLGHGIGSAIVQNGEFYRGSCGSSGEIGHITLE 238 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAAL 305 G C CGN GCLE +AS +++ A+ + Q + + + + + AA Sbjct: 239 KDGPLCSCGNRGCLEALASANAMAGQARELVRQGKGQRILELAQGNEENIDAKEIFDAAK 298 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 GD A I+ ++G LA +NL +P +++ ++ A D L + I+ + + Sbjct: 299 EGDAAAALIVDKAIEYIGIGLANYINLLDPDMLILAGGVTGAGDYLITRLKRVIKARQMK 358 Query: 366 AYSQHISVESTQFSNQ 381 + + + ++ N Sbjct: 359 FAGRKVKIRISKLGND 374 >UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CY52_MYXXD Length = 408 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 178/393 (45%), Gaps = 8/393 (2%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 ++ N+ + +I + +SR +++R +L+P++++ IV ++ + LV+ + + G Sbjct: 15 MRAQNSSLLLNMIWRERQISRAEIARRTELSPSTVSAIVADLERSGLVRSIGAGVS-RGG 73 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISH 131 R + +A+ + + + + AL DL ++ A++ D L ++ Sbjct: 74 RRPTLIGFCDDAFSLIGVEMGATHVTAALTDLRGRVRAYRHASHAVREDPKGTLQKVREL 133 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 + + + + + I +P + ++ + E+L G+PV+ Sbjct: 134 VQEVLDAERVPRRSVAGMGIAVPSPVHPSAPGKLSPLLVPAWRDYDVQESLRSAFGLPVF 193 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 + +D + ++E +GA D+ + + +G+G I G + + EI H VD Sbjct: 194 VDNDANLGALSECYWGAGVNGEDLAYIKLATGIGSGHIIHGDVYRGAGGTAGEISHMAVD 253 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 G +C CG GCL T+ ++LE A+ + + + LTV L + A G+ A Sbjct: 254 SSGPQCVCGLRGCLVTLIGSAALLERARELMGRK-----DKRALTVRELVEGARAGEPAA 308 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 + +I G+G ++G +A ++NL NP +++G +S D+L + S+R++AL Sbjct: 309 RQVIDGLGHYLGIAVAGLLNLLNPAIVVLGGEISSVGDLLLDPLRASVRKRALSTSMAET 368 Query: 372 SVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRL 403 + ++ ++ GAA LV A L L Sbjct: 369 RIVTSALGDRAIAVGAATLVLQAALRDRTLFPL 401 >UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2IDS2_BEII9 Length = 428 Score = 356 bits (915), Expect = 8e-97, Method: Composition-based stats. Identities = 94/400 (23%), Positives = 183/400 (45%), Gaps = 10/400 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL-- 63 Q G + I+ N V I + PVSR + + L+ +++ ++ +L+ L+ E Sbjct: 2 QTGDTELIRAINRFHVLDTIRRFEPVSRAAIGKRTHLSRVTVSSLIATLLQEGLIHEESD 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--D 121 E +G RGRP L + A + + ++S ++FL + +L + + S L Sbjct: 62 ETTNSGTRGRPTNLLGLNPNAAYVVGAKLSMHQVFLIVTNLRADPLARLSLPLHPHQLVP 121 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY-EDVKEMPLGE 180 ++ + + KL ++ + I LPG ID++ GI H P + K + L + Sbjct: 122 DAIVALLDEGVRSVVALAGLKLGQIAGLGIGLPGFIDSKAGISHWSPILAPEPKPVALAD 181 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 + + G+ V I++D + T+AE FG + + + V+++ +G G+ DG L Sbjct: 182 MVRRRLGLAVTIENDANLLTLAERWFGECQENDNFVVVMMEAGIGMGLFLDGELYRGQHG 241 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD-- 298 E GH+++D +G RC CG +GC+E + +IL A+ + + + Sbjct: 242 MGTEFGHSKIDRHGPRCRCGQYGCIEAFTADYAILREAEKIIRTPAAHEGADDTAEAETR 301 Query: 299 --SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 ++ + A G++ + I G +G +A ++N+ +P KI+I ++A D++ P + Sbjct: 302 VATVVRLAREGNVALRQIFATAGEILGLGIANLINIIDPAKIVISGSGTRAVDLIEPALR 361 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMY 395 ++ L + ++ GAA LV A+Y Sbjct: 362 AAVAANTLAVLQNRCEIIFHDQGDEVWARGAASLVLQALY 401 >UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017885B4 Length = 403 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 100/396 (25%), Positives = 190/396 (47%), Gaps = 10/396 (2%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G+ I+ N V I GP+SRI+L++ +L+P+++ V+E++ V Sbjct: 1 MNNMKKGNHKLIQALNRSKVLNKIRTEGPISRIELAKKNKLSPSTVASAVQELIREGYVS 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E+ + GR + L + L++ I+ + LA +L +K+ +E+ +A Sbjct: 61 EIGTGSSSG-GRKPILLKFNPDNHFLLAVSITNSVMILARMNLEAKVFAKETHPIAGLQG 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +++R++ +D F Q+ LER I+I +PGI+ +G+VH + +PL Sbjct: 120 EAVIERLLQLMDDFMA-GQEDLERCVGISINVPGIVSDSHGVVHYNTKLR-MTNVPLKRI 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 E G+ ++++D+++ +AE FG ++I + I +G+G++ + HLL Sbjct: 178 FEDRYGMRTWVENDMNSVVLAERRFG-DYAFANLIYISIGDGLGSGILINDHLLRGKHGG 236 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPL 295 E GHT V+ G RC CGN GCL++ S ++ + +M+ + Sbjct: 237 AGEFGHTSVNRSGIRCECGNAGCLDSYISWIAVYSRIITAIATGRPTMIQELSGGDYSKI 296 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 +A +GD LA+D+ V H+G + +VN+FNP+ +++G L+ L ++ Sbjct: 297 VPSVFKEALRKGDKLARDLNEEVAEHLGAAIVNLVNMFNPEALILGGDLAHGNPELLDMV 356 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 S I + A+P + + + GAA V Sbjct: 357 SVYIDRHAMPILKDDMVFGLASLGEEDKLMGAASVL 392 >UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepID=A8L0L3_FRASN Length = 401 Score = 354 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 99/394 (25%), Positives = 184/394 (46%), Gaps = 16/394 (4%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + PG ++ N V ++ + G +++ +++RL L+PA+++ IV E+ E+ Sbjct: 16 MPRTPPGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESG--- 72 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 +++++ A + GR AV + + + + L + +A+ DL+ +++ E+ ++ + Sbjct: 73 DVDVRPAVSGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQ 132 Query: 122 L-PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + +D R + + + LPG ID G V +P Sbjct: 133 AQEGIATAGRLVDDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGSSAILPGWVGVPAAA 192 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 + + G+PV + +D + +AE +GA +G RD+ + VG+G++ DG + G+ Sbjct: 193 QMSERLGLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGLVIDGRVHRGGAG 252 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGHT +D G C CGN GCLETI +LE + HG LTV + Sbjct: 253 TAGEIGHTTLDENGSVCRCGNRGCLETIVGTSVLLESLRTS---------HGPDLTVRGM 303 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 A+ GD +++ G +G A + NL NPQ I++G L+ A + L + + Sbjct: 304 IDRAVAGDAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQVVH 363 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGA-ALVKDA 393 + A+PA ++ + + + GA ALV Sbjct: 364 RFAVPAAVP--TIVAGVLGERAEVLGALALVLRE 395 >UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0H5_HERA2 Length = 414 Score = 353 bits (908), Expect = 5e-96, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 178/382 (46%), Gaps = 20/382 (5%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 + +++ N V +LI + G +SR D+++ +L+ ++++ I+ ++++A LV E I Sbjct: 8 TADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIG 67 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-L 125 + GR + L +A + + L +SR + + DL++++ + D + + Sbjct: 68 TSKG-GRRPIILEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGM 126 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 I I R+++I + +PG +D NG P +P+ E L Q Sbjct: 127 PLIKQLISTMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIREELSQT 186 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDH-NVGAGVITDGHLLHAGSSSLVE 244 +PV I +D + MAE +GA +GA++++ + + +GAG+I D HL S E Sbjct: 187 FRLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGSIGSAGE 246 Query: 245 IGHTQVDPY-----GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 +GHT + G N G LE +AS ++L LA+ + S +H + Sbjct: 247 VGHTTLSVENDESFGPI----NAGSLEALASQITVLRLAREQKLISADDDVH-------T 295 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L + A + I+ ++G +A ++N+FNP +++IG + + + +L I ++ Sbjct: 296 LVRKAESS-PEIQAILRRTAHYLGVAIASIINIFNPDRVVIGGVIPETSPLLIETIRATV 354 Query: 360 RQQALPAYSQHISVESTQFSNQ 381 ++AL + S+ Sbjct: 355 ARRALSIAVNNTSIVPGALGRN 376 >UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR-2 RepID=C6D7F4_PAESJ Length = 396 Score = 353 bits (907), Expect = 6e-96, Method: Composition-based stats. Identities = 90/393 (22%), Positives = 184/393 (46%), Gaps = 16/393 (4%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 + + +++ +++ N V RL+ + SR +L++ + L ++IT I+ E++ +V Sbjct: 3 VTKTKRGTNLEDVQEMNRSLVIRLMRRREVCSRAELTQDSGLNQSTITNIINELISWGIV 62 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E + E G +GR ++G+ + E + + +R++R I +AL DL + + + D Sbjct: 63 VETGVIE-GKKGRRSIGIKLNCEPYKIIGIRLARKSITVALYDLGGSEYKRQQIPINMAD 121 Query: 121 DLP-LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +R+ I + + +I + PG + + G + M ++ +++ + Sbjct: 122 GSTNAFNRMKELIRDMMQSNAV--GNVIAIGVVTPGPLLRDEGRIGLMTYFPGWEKINIQ 179 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGAS-RGARDVIQVVIDHNVGAGVITDGHLLHAG 238 E L Q +PVY++HD A +A FG + +I V VGAG++ +G + Sbjct: 180 EELMQEFELPVYMEHDAKAGALAHWWFGTPLQEQGVMIYVAAGQGVGAGIVIEGKVFRGS 239 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 EIGH +D G++C CGN GCLE S ++L+ + H ++ Sbjct: 240 LGMAGEIGHMSIDYKGQQCECGNRGCLELYCSTSALLQTLKKE---------HASLKSIW 290 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + G+ ++ + ++G L ++N FNP +I++G +++A D+L + Sbjct: 291 QELKEVKSGET--REAVRQAAWYLGFGLVNIINTFNPDRIILGDEMAEAGDLLLDTVKSV 348 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 I++ LP +++E + G+A+V Sbjct: 349 IKEHVLPDVYSQLTIELASDDMDTMLVGSAIVA 381 >UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1E2_JONDD Length = 402 Score = 352 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 171/386 (44%), Gaps = 14/386 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 PG ++++N + I Q G +++++L+ L+ A+++ IV+E+ +VQ Sbjct: 3 AKPPTPGSQSSLRESNRTRIIDAIKQFGGLTQVELAGATGLSAATVSNIVKELTTLGVVQ 62 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 + GR A + + +++ + +AL D S L+ + L Sbjct: 63 ---TSPSTRSGRRAQHVTLARTPGLVGAVQFGLRHMRVALADSSGSLLSDHQLPLGADHR 119 Query: 122 LPL-LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 LDR I + L +A+ LP ++ +G++ + + Sbjct: 120 ADAGLDRAALLIADMMETFDAESAELQGVAVALPAPVEHSSGLITSPGIMRGWDNVAVAH 179 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 + + G PVY+ + + + E GA+ GA+ + + + +GA +I +G L + Sbjct: 180 VMSERIGKPVYVANSSNMGALGELRQGAAAGAQHTLYIQVGQRIGAALIINGELFWGANG 239 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 S E GHT DP G+ C CGN GCLET+A + +LE ++ +T+ + Sbjct: 240 SAGEFGHTTTDPDGQICRCGNRGCLETVAGGNVLLEALRVSHG----------VMTLKDM 289 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 + A GDL I G +G A + N+FNP+++++G L+ IL + ++I Sbjct: 290 MRYARDGDLGCIRAIADAGRAIGLAAANLCNVFNPERVVVGGDLAHTGSILLDPLRETIE 349 Query: 361 QQALPAYSQHISVESTQFSNQGTMAG 386 + +LP+ ++ I++ M G Sbjct: 350 RFSLPSTAECITIVPGSLGADAEMIG 375 >UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31B1F Length = 404 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 179/392 (45%), Gaps = 11/392 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M G + ++ N + + + G +SR +L+R L+ ++++ +V ++ LV Sbjct: 1 MRRAAPSGSLASLRDRNRRLLVDELRRAGLISRAELARRTGLSRSTVSTLVADLQAQGLV 60 Query: 61 QELEIKEAG-NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK 119 E E+ AG GRP V L +E A L + + + + + DL+ ++ + + + + Sbjct: 61 AEREVDGAGPQGGRPPVLLSLERAAGVALGIDFGKRHVRVIVSDLAHTVLADVERPMETE 120 Query: 120 DDLPL-LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 P + ++ + Q + + + +PG ID G V + Sbjct: 121 QSAPEGFEVAVALVHQALADAGVEQTDVIGAGMGVPGPIDISTGEVGSSAILPGWIGLRP 180 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 E + G+ V +++D + +AE +GA R +D + V + +G+G++ G L Sbjct: 181 REDMSARLGLAVRVENDANLGALAELTWGAGRDTQDFVYVKVASGIGSGLVLGGQLYTGA 240 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 EIGH+ VD G C CGN GCLETIAS I EL + G LT++ Sbjct: 241 GGIAGEIGHSMVDERGAVCRCGNRGCLETIASTRQIRELLRPA---------RGADLTIE 291 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + A GD ++ +I +G ++A + N+ NP K+++G LS A D+L + D Sbjct: 292 EVIAHAREGDRASRRVIGDAARAIGVVVAQVCNVLNPAKVIVGGDLSAAGDVLLDPLRDE 351 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 + + A+PA H+ + + + GAA + Sbjct: 352 VSRHAVPAAGGHVEIVPGVLGRRAEVLGAAAL 383 >UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRQ2_ALIAD Length = 399 Score = 346 bits (889), Expect = 8e-94, Method: Composition-based stats. Identities = 84/397 (21%), Positives = 175/397 (44%), Gaps = 14/397 (3%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 +++ N V +LI L SRID+S++ L A+++ IV E++ LV E+ + Sbjct: 6 DASAMRRMNRATVLKLIRDLRTTSRIDISQMTGLNKATVSNIVDELIAEQLVLEVGYGSS 65 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL---- 124 GR + L A + + + + + + ++ + V + + L L + + Sbjct: 66 SG-GRKPILLRFNANAAYAIGVDVQLSHMTTVVCNIRGEPVYRQVRTLGLSEAPDVRAVL 124 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L+ I + + L + PG++D G V+ +P V E + L + Sbjct: 125 LEAIEEELRKAIAAAPPSPYGLLGACLAFPGMVDFRRGAVYYLPSLF-VGEWEILADLGR 183 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +P+++ +D + E + A + ++++ V + +GAG++ +G L E Sbjct: 184 SVDIPLFLDNDANCGAWNEYMAQAMK-LKNLVFVNMGLGIGAGIVIEGKLYRGRDGIAGE 242 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 GH ++P G C CG +GC E AS ++ + S L + ++ + A Sbjct: 243 AGHMTINPMGSACMCGGYGCWEEYASERGLMRYLREAGADL--SALSLRDSLLEQALEQA 300 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 + +G ++G +A ++NL NP ++++G +++AA + P + I+ +AL Sbjct: 301 QNDNRACIRAFHSLGQYLGLGIANLLNLLNPDEVILGGSVARAATFVLPEVERVIKHRAL 360 Query: 365 PAYSQHISVESTQFSNQGTMAGAAL--VKDAMYNGSL 399 ++ I V S GA+L V + ++ ++ Sbjct: 361 -LQNKQIPVRVG--SQHAVAIGASLLAVHETLFASAM 394 >UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterales RepID=B0K1L9_THEPX Length = 400 Score = 346 bits (888), Expect = 9e-94, Method: Composition-based stats. Identities = 86/395 (21%), Positives = 182/395 (46%), Gaps = 8/395 (2%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 +KQ N V I + G +SR D++ + L ++++ +V E++ V+E Sbjct: 3 TADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEGPG 62 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL-PLL 125 A GR + L + A + + + I + L DL + ++ E+ ++ + + ++ Sbjct: 63 -ASKGGRKPIILSINNNAGCIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAII 121 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 +R+I ID+ + + + I I +PGI+D + G + P + +++PL E +E Sbjct: 122 ERLIELIDEAILNAPNTIRGILGIGIGVPGIVDYKKGSILMAPNLK-WQDVPLKEIIENK 180 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 + V+I ++ + + E FG + + V +G G+I +G L E+ Sbjct: 181 FKIKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEM 240 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQP----LTVDSLC 301 GH ++ + +C CGN GC E AS ++ + +L S + L+ + Sbjct: 241 GHMTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDII 300 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A +G +A + + +G +G + ++N FNP+ ++IG+ LS A D++ + + + Sbjct: 301 NYAQKGSEIAVEALKEIGRKLGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEK 360 Query: 362 QALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMY 395 + L + +++++ GA +LV ++ Sbjct: 361 KCLVYRYYKVKIKTSKLQFHAGAIGAVSLVISELF 395 >UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=C7M5N9_CAPOD Length = 402 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 192/399 (48%), Gaps = 15/399 (3%) Query: 10 IDQIKQTNAGAVYR--LI---DQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 +++IKQ A + +I G + DL + + ++TK+V E++E +V + Sbjct: 6 LEEIKQGIRSASLKKDIICYYINNGDDTLADLGKELNFSVPTVTKMVGELIEDGIVMDFG 65 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEE-SQELALKDDLP 123 E RP + + + +++ + IS+ + + L + L+ E+ Sbjct: 66 KMETPGGRRPNI-YGLNQSSGYFIGVDISQKRVHIGLINFKGDLIDEQMDISFEEAHPHE 124 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +R+ I+ F +++ SI I + G ++ + G + ++ E PL E E Sbjct: 125 RFERLCEIIEDFMSHTVVPKDKILSIGINISGRVNPQTGHSYSFFYF---DERPLTEMFE 181 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + G+ V I +D A E + G + +++I V + +G GVI +G L + S Sbjct: 182 EKLGIDVSIDNDSRAMAYGEYIKGRVQAEKNIIYVNVGWGLGLGVIVNGQLYYGKSGFSG 241 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVD 298 E GH C+CG GCLET AS ++ +L+ SS+L + +T++ Sbjct: 242 EFGHITAFENEILCHCGKKGCLETEASGSALYRKFLEKLHNGQSSLLTQQKENEDEITLN 301 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + AL+ D+LA ++I VG +G+ +A ++NLFNP+ ++IG L+ A D L + + Sbjct: 302 DIIDVALQEDILAIELIEEVGNTLGKHVAGLINLFNPELVIIGGTLANAGDYLILPLRSA 361 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNG 397 I++ +L ++ S++ ++ ++ + GA+L+ + + G Sbjct: 362 IKKYSLNLVNKDSSIKVSKLGDKAGLLGASLLARSKFIG 400 >UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWZ1_9CLOT Length = 394 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 96/397 (24%), Positives = 180/397 (45%), Gaps = 21/397 (5%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 +N + ++++N V L+ + G SR +LS+ + L ++IT I+ +++A +V E Sbjct: 5 QNGEKKLKDLRESNIALVINLMRKFGICSRAELSKASGLVQSTITSIIDSLIKAGIVIET 64 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDL 122 G RGR ++G+ + TE L +R++R LA+ D+ +L E + +D Sbjct: 65 GSL-VGGRGRRSIGIRLNTEKLIVLGIRVTRSSYTLAIIDIFGELKNLEKHSITKDLEDP 123 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 + +RI+ F +++ ++ + + LPG + + K + Sbjct: 124 SVFERILEDASTFLLKND---QKPVGVGMALPGPYLINEDTSLFLTN-QGWKSFTFTKKF 179 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGA---SRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 E +PV+++ D + M E FG +G + + V VGAG++ DG + Sbjct: 180 ESRLHLPVFVEQDSNVGAMGEWWFGNSEIGQGTK--VFVSTGDGVGAGIVVDGKIQRGAL 237 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 + EIGH ++ G +C CGN GCLE S +IL+ A+ L L +S Sbjct: 238 GAAGEIGHMSINFEGPQCQCGNKGCLELYCSEKAILKAAKC---------LSKPILNFES 288 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L G+ +I+ G +A + LFNP +++G K D ++ ++ Sbjct: 289 LVTEYRAGNSAVTEIVNRAAEMFGIGIANIAYLFNPGVVVVGGSYKKLGDSFLDQVNRTV 348 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAG-AALVKDAMY 395 R+ P + Q+I ++ + + + G AA+V D + Sbjct: 349 RRHIYPLFYQNIGLQFSALEHDSCLIGIAAVVFDRLL 385 >UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_ANATD Length = 399 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 99/395 (25%), Positives = 191/395 (48%), Gaps = 8/395 (2%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G+ +KQ N V + I +SR +S+L L A+++ + E+++ V E + Sbjct: 2 GNHTLLKQINKLLVLKTILDNKIISRTKISKLVDLNKATVSNLTDELIKEGYVVEKGYGK 61 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 + GR V L V + + + + I + L + +++ EE + + +D L R Sbjct: 62 SKG-GRRPVLLQVNKDVGSIIGIDLGVDYIHIILSNFVGEVIFEEYANMKIGEDKEKLLR 120 Query: 128 II-SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 ++ I++ + + + + I I +PGII+ E+G V P + + +PL ++Q Sbjct: 121 LLFDLIEKSVKKAPQTPKGILGIGIGVPGIIEKESGTVLLAPNLK-WQNVPLRSIVQQKF 179 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 +PVYI ++ +A + E FG D+I + + +GAG+I D L + E+G Sbjct: 180 NLPVYIDNEANAGALGEKWFGEWGKVSDLIYLSVGIGLGAGIIIDNKLFRGAAGFAGEVG 239 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMS----SMLHGQPLTVDSLCQ 302 HT ++ C CGN GCLE AS ++L + + + Q + S + +T + Q Sbjct: 240 HTTINFQDDVCSCGNIGCLENFASERALLSVIKKLVKQGVEDRYISWENVDEITPSRIIQ 299 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 AA G + + I V +G +A +VN+FNP+ ++IG+ S ++ + + I Q+ Sbjct: 300 AAKEGSRVCRMAILEVAEKMGIGVANLVNIFNPEMVIIGNKASFFGELFLEKLREVINQR 359 Query: 363 ALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYN 396 + A ++ +E ++ ++ + G A+V M + Sbjct: 360 SFIAQFYNLKIEVSKLKDRAVVLGCIAMVISDMLS 394 >UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea blandensis MED297 RepID=A4BDK2_9GAMM Length = 402 Score = 343 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 121/405 (29%), Positives = 212/405 (52%), Gaps = 7/405 (1%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M N ++D +KQ N ++R+I + G +SR L ++ LA S+TK+ R ++E +LV Sbjct: 1 MTNTNPVANLDSVKQYNLMRLFRIIVEYGLISRTQLVEVSDLAAGSVTKLTRLLIEQNLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E+ +++ RGR AV L +T+ L+ R R +++ L DLS L+ E++ L + Sbjct: 61 HEVAQQQSE-RGRKAVLLAPKTDDIQILAARADRQHLYVGLCDLSGNLLQREAEPLNADN 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + + ++ + F H ++ + I +T+PG++D GIV+ MP V E+PL + Sbjct: 120 EDEFVAQLTRSLRHFLTTHADQVRNVVGIGVTMPGLVDANRGIVNFMPHVP-VHELPLAD 178 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 + +P YI SA +AE GAS AR+ + + + + VGAG+I + L Sbjct: 179 IITDALEMPCYINSFASAMALAEKQIGASFHARNSVFIEVHNGVGAGIILNNELYSGT-- 236 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGH Q+D GK C CGN+GCLET S +I+E R Q++ S+ + T+ + Sbjct: 237 GVGEIGHIQIDRLGKPCICGNYGCLETEVSDSAIVEHFNQR--QALQSVDTERAETIQDV 294 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 QAA + A ++ AH+G +A + NLF P I++ +++A ++ PV+ ++ Sbjct: 295 LQAAGELNENALAVLKEAAAHIGTAMATVANLFRPDSIILAGAVTQAWSLIHPVLEQQLK 354 Query: 361 QQALPAYS-QHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLL 404 ++L + I + + + +G ALV+ + G + L Sbjct: 355 TKSLQVRGLKPIELLRSDIYDSPWYSGYALVRQGLLEGDIFHTLF 399 >UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PY53_CATAD Length = 422 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 103/412 (25%), Positives = 182/412 (44%), Gaps = 28/412 (6%) Query: 2 VAENQPGHIDQIKQTNAGA--VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHL 59 + Q I N G + + + +SR DL R LA +++ ++ +++ A L Sbjct: 5 AGDTQAAPQTPINLHNLGRVRILQALTSHARLSRADLVRHTGLARTTVSSVIFDLISAGL 64 Query: 60 VQELE---------------IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDL 104 V+E GRP + L +E EA + + L + + + D+ Sbjct: 65 VRESPDVRENSDTAAAAAAGAAPGQRTGRPPLLLRLEPEAAYAVGLDVGHDHVRAIVTDV 124 Query: 105 SSKLVVEESQELALKDDLP-LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGI 163 + ++ LA+ DD LD + I + ++ + + + +D G Sbjct: 125 VGTPRWDRTEALAVDDDPRRALDTAVRLIAEAVKDTAVPPHKILGLGLGIACPVDKTTGG 184 Query: 164 VHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHN 223 +H + L + TG+P I +D +A +AE FGA+R A +V+ V + Sbjct: 185 LHAEGIMPGWVGTRPADDLAERTGLPTQIINDANAGVLAERRFGAAREATNVVYVRLAAG 244 Query: 224 VGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLN 283 +GAG++++G +L E+GH V+ G C CG+ GCLET+AS +I L Sbjct: 245 IGAGMMSEGRMLLGHHGLAGELGHVMVELNGAVCRCGSRGCLETVASPAAIAGLLARSWG 304 Query: 284 QSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP 343 Q S+ L + RGD A ++ G VGR L+ V L NPQ ++IG Sbjct: 305 QPADSI---------DLPELLRRGDRGALRVVEDAGEAVGRALSAAVQLLNPQLVVIGGD 355 Query: 344 LSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAG-AALVKDAM 394 L++A + L I ++R+ + + +Q + + + + + G AALV D++ Sbjct: 356 LAEAGEALLEPIRRTLRRGTMGSLNQRLRIVPSTLGDSAGVRGAAALVLDSV 407 >UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXN7_PAESJ Length = 387 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 171/389 (43%), Gaps = 16/389 (4%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 G IK+ N + + I + G +SR D+S++ L A+++ V ++L+ LV E EI Sbjct: 3 TGDASYIKKMNRSLILKEILKEGMLSRADVSKVTALTRATVSGQVADLLDEELVIETEI- 61 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 E GR + L + EA + + + + +I A+ DL LV+ ++ +L +L Sbjct: 62 EYNQVGRKPIMLSINAEAGYAIGIDLEYDQISFAISDLKGSLVLTDTIKLQSHAYADILS 121 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 + I + R + I I + G++ T+ ++H +P + ++PL LE Sbjct: 122 LLTGQIKHYQERFAASRYGIIGIVIAIHGLVSTDE-VIHYIPSF-GWHDVPLKSDLENAL 179 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 G+ V ++++ + AE +F D+I V + +G G++ + EIG Sbjct: 180 GLQVKLENNANLSAFAERVFFH-HETDDLISVTLYSGIGMGMMINHSFFRGQDGFAGEIG 238 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 H V P G C CGN GC E AS S+ +L + + + +T + Sbjct: 239 HMIVVPGGLPCNCGNKGCWEKYASETSVFQLLRAKKPDA--------DITYAQIGNWIEA 290 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 + A ++I ++ L ++N++NP+ +++ S L + I ++ + Sbjct: 291 KEPDATELIEQFIYYLSIGLNNIINIYNPEVVVLDSELLRIYPDSLQHIESNLNSRV--- 347 Query: 367 YSQHISVESTQFSNQGTMAGAALVKDAMY 395 S + ++ + + + GA + + Sbjct: 348 -SHYREIKISTIGKKSCVLGACAIAIQNF 375 >UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V137_ROSS1 Length = 408 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 99/390 (25%), Positives = 176/390 (45%), Gaps = 10/390 (2%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 + N+ V R+I + +SR D++R L +++ +V E++E L++E ++ Sbjct: 11 QHTRNHNSRLVLRVIYEDEAISRADIARKTGLTRTTVSAVVNELIEQGLIEETGAGQSSG 70 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR + L V E+ +L +I AL D+ + S L L + Sbjct: 71 -GRLPILLRVVHESHCVAALSFEDTQIVGALVDMRGGIQRRVSVPLQGYRPEDLPGYLTQ 129 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 +D + I +++PGI+D G+V R + + + PL + L+ +PV Sbjct: 130 LLDDLTAD---PAPHILGIGLSMPGIVDPVRGMVRRAVNF-GLVDTPLRQLLQDQYRLPV 185 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 Y+ + +AE +FG + +++ + I VGAG++ +G L EIGH V Sbjct: 186 YLDNAARLTALAEYMFGDGAASGNLVVISIGVGVGAGIVLNGALFSGDGFGAGEIGHVVV 245 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQS----MSSMLHGQPLTVDSLCQAALR 306 G RC CGN GCLET+ASV +I+ A+ S + ++ C+A Sbjct: 246 ADNGIRCNCGNVGCLETVASVTAIVRAARRLATDPSSRLRSLASAAAAIDFNTFCRALEE 305 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 GD I+T VG ++G +A +V L N ++I++ ++ L + S+ + AL Sbjct: 306 GDDGVAGIVTEVGRYLGIAVAHIVGLLNVERIVLTGAIAALGPPLLEAVKTSLARHALAP 365 Query: 367 YSQHISVESTQFSNQGTMAG-AALVKDAMY 395 + V+ + + G AA+V D + Sbjct: 366 LAAMTRVDLVPERHDAVLLGIAAMVLDHEF 395 >UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0W0_HERA2 Length = 386 Score = 340 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 180/381 (47%), Gaps = 15/381 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + +Q K N V++ I G +SR+D++RL L P +++ V +LE LV Sbjct: 1 MQGLPKKASREQSKLHNYRLVFKAIYDGGAISRVDVARLTNLTPTTVSSNVAILLEEELV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 QE+ + +G G+PA L V + H + L ++ E+ + +L + ++ L + Sbjct: 61 QEVGLAPSGG-GKPATLLSVLDDGRHLIGLDVAGHELRGTIINLRGAIRQRQTLALNGGN 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 +L+++ IDQ + I I PG+I+T G+V + + L + Sbjct: 120 ---VLEQLYQLIDQLLANTHSP---VLGIGIGAPGVINTTAGVVQQAVNL-GWHNLALRD 172 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L + G+PVY+ +D +AE FG+ R A +++ + + +GAG+ +G ++ + Sbjct: 173 LLGKRYGLPVYLANDSHVTAIAEHTFGSQRNAANLVVINVGRGIGAGIFINGRIVGGDAW 232 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 EIGH V P+G C CG++GCLET+AS ++L QS QP T+ + Sbjct: 233 GAGEIGHVVVQPHGTLCRCGHYGCLETVASTSALLTKLDATQPQS-------QPWTIAEV 285 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 A D + ++ ++G +A +V L N Q I++ L++ + L + S+ Sbjct: 286 QAALAANDPTVRALVDEAAYYLGIAIANVVGLLNAQSIILAGSLAQLGNDLLQPLRRSLA 345 Query: 361 QQALPAYSQHISVESTQFSNQ 381 Q AL V+ + + Sbjct: 346 QHALQTLVAATDVQVSTLGSD 366 >UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHH0_PETMO Length = 385 Score = 340 bits (873), Expect = 6e-92, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 177/390 (45%), Gaps = 13/390 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + + +K+ NA +++ + GP++R +++R +L P++++ I ++ +++E+ Sbjct: 2 KKASLSSLKENNAALIFQSLRIQGPMTRAEIARETRLMPSTVSYITNLLIHKKVLKEVGS 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 ++ G+ + L + + + ++ + + + + ++ S+ + + LL Sbjct: 62 EDVSRVGKKGILLDINYDDFLFIGYDVGSAYSRVIVSNGKGDILY--SKRFVSEKNDKLL 119 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 +I +I + + I + PG ID ENG+V R D+ + + +++ Sbjct: 120 KQIYENIKMVKNKFN-----IIGIGMAFPGYIDPENGVVIRSHNI-DISNFEVKKVMKKE 173 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 +P Y+ H+ + S +D + I +G G++++G +L ++ E+ Sbjct: 174 FNLPAYVDHNTIMMARN-LISNNSHKEKDFCVINIGPGIGVGIVSNGKILRGYKNAAGEL 232 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH V+P G++C CG +GCLET +S +I+ + +++ + + + A Sbjct: 233 GHVTVNPEGRKCNCGKNGCLETESSSKAIVRNYEEISGKNLECEGSCES---KLVYELAK 289 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 +GD A G ++G +A +VN+ NP+K+ I +S + L S Q Sbjct: 290 KGDENAIKAFERAGKYLGIGIATLVNILNPEKVYIAGGVSNGWEFLKDSTEQSYNQHIF- 348 Query: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMY 395 ++ +++E + T GAA Y Sbjct: 349 YANKDVTIEVSSIGEYITACGAATYAFEKY 378 >UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 Tax=Thermobifida fusca YX RepID=Q47NL3_THEFY Length = 389 Score = 338 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 192/395 (48%), Gaps = 12/395 (3%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 A+ PG ++Q N V + + G +++ +++R L+ AS++ IVR++ +V Sbjct: 5 AQVTPGSQAALRQANRERVIAALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMGVVS- 63 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDD 121 ++E + GR A + ++ +++ + + +AL + +++ EES + +D Sbjct: 64 --VRETSSNGRRARAVTLQRPPGVLVAIDFTHSRLTVALGNTDGRVLQEESIAYDVSEDP 121 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + + R + + + + + +A +PG +D G++ + G Sbjct: 122 VRGVRRAVWLTETLLTQARVDRSMVLGVAAAIPGPVDPATGLIGDITSMPHWAGFNPGAE 181 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L++ G+PV + +D + +AE GA+RG V+ V + H VGAGVI G L + + Sbjct: 182 LQERLGLPVSVDNDANLCALAELTEGAARGLEHVVYVKVAHGVGAGVILGGRLFRGMNGN 241 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH +D G+ C CGN GCLET+ +L++ + + L L Sbjct: 242 AGEIGHIGLDERGQVCRCGNRGCLETLVGTPYLLDMLPQQGRVKHGASLV-------DLL 294 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 +AA GD + II GA +GR +A++VN+ NPQ +++G +++A ++L + ++ Sbjct: 295 EAAQEGDPGCRRIIAEAGAALGRGVAVVVNMVNPQMVIVGGEIAEAGELLLDPMRRAMEL 354 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMY 395 AL + + + + + + GA +V D+ + Sbjct: 355 GALGNALTGLRLVTGELGERAALRGALQVVLDSTF 389 >UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridium thermocellum RepID=A3DCE9_CLOTH Length = 404 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 178/388 (45%), Gaps = 8/388 (2%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 ++ I N ++ I + ++R +++ L+ ++ I ++++ ++ + ++ Sbjct: 8 DLNSITSNNRMNIFNCILEAKEINRAVIAKKVGLSIPAVMSITDDLIQKGIIYVIGKGKS 67 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 G+ L V + + ++ + + R + + + + +V + S+ + L+++I Sbjct: 68 SG-GKRPELLAVVPDRFFFVGVDVGRTSVRVVVMNNCRDVVYKVSKPTESVEPDELINQI 126 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 + + L+R+ I + +PG+I+ G V P + + L + L++H Sbjct: 127 TEMTMESINESKFPLDRVVGIGVAMPGLIERGTGRVIFSPNF-GWNNIALQDELKKHLPF 185 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 V +++ A + E ++ V + + +G+ ++ L + S + EIGH Sbjct: 186 NVLVENANRALVIGEIKNTQPNPTSCIVGVNLGYGIGSAIVLPNGLYYGVSGTSGEIGHI 245 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTVDSLCQ 302 V+ +G C CGN+GC+E+IAS ++I A++ + + S + + + + Sbjct: 246 IVENHGSYCSCGNYGCIESIASGEAIAREARIAIANKIQSSVFEKCEGDLKKIDAKMVFD 305 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 AA GD LA+ I+ ++G+ LAI +N+ +P++I++ L+ + D +I ++ + Sbjct: 306 AAKEGDHLAQSIVEKAADYIGKGLAITINMLDPEQIILCGGLTLSGDFFIDMIKKAVSKY 365 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALV 390 + ++ + + T G A + Sbjct: 366 QMRYAGGNVKIVVGKSGLYATAIGGAWI 393 >UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida fusca YX RepID=Q47PH9_THEFY Length = 417 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 97/408 (23%), Positives = 167/408 (40%), Gaps = 10/408 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 + A P +++TN G V R I P SR ++ L A+++ +V E+++ LV Sbjct: 2 VGATEGPAGFQAVRETNLGIVLRTIRTSAPCSRAVVAASTGLTKATVSSLVAELIDRGLV 61 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK- 119 E + GRP + L + L L ++ + LA DL + V+ + Sbjct: 62 CETGLVNERRVGRPGMMLTINGSTLVALGLEVNVDYLALAALDLLEREVLTRHVAFDARA 121 Query: 120 -DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 ++ + + + + L +++ +P ++D +G V P + PL Sbjct: 122 AGPEECAKQLKTLLLETVADPLLRDRPLLGVSVAIPALVDVSSGTVTNAPNL-GWRNFPL 180 Query: 179 GEALEQHT------GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDG 232 + L + G PV + +D + +AE G D++ + + +GAGV+ +G Sbjct: 181 QQRLTELLADTPLAGAPVRVDNDANLGAVAEYRGGHLARTMDLVYLTGEVGIGAGVLMNG 240 Query: 233 HLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG 292 L S E+GH + G C CG GCLE +A +DSIL A L Sbjct: 241 EPLRGASGFAGEVGHIPLLKDGPACACGQDGCLEALAGLDSILRRAVPDLVPEGPVRGSV 300 Query: 293 QPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 V + A GD A + G +GR A +VNL NP I++G + L Sbjct: 301 VESLVAETVRRAESGDATAVQALEDAGEWLGRAAATLVNLLNPSAIILGGYFVPLSPWLL 360 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAAL-VKDAMYNGSL 399 P +++ + S + +E + G A+ + DA+ G L Sbjct: 361 PSCREAMAAYSFAPNSGNCRIEPSTLGLSAAARGGAMALIDALDTGLL 408 >UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobacteria (class) RepID=Q1AZ04_RUBXD Length = 402 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 172/391 (43%), Gaps = 15/391 (3%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 G ++ LI +R +L+ + L A++++ V ++EA LV E + + GRP + L Sbjct: 10 GQIFGLIRSGRARTRAELAAVTGLTRATVSQRVEVLMEAGLVVETKEGVSTG-GRPPMVL 68 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLPLLDRIISHIDQFFI 137 +A L+ + LA+ DL + +VE +L + + +L + ++ Sbjct: 69 GFNKDAGVVLAADLGATHCRLAVADLGGRPLVELPADLDIAQGPDAVLGWVQDRFEELLE 128 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG-VPVYIQHDI 196 + E + I + +PG +D G P +P+ E + G VPV + +D+ Sbjct: 129 EAGRSREEVWGIGVGVPGPVDFARGQAVSPPIMPGWDRVPIPERFRERFGGVPVLVDNDV 188 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGK- 255 + + E ++ V + +G G++ G + + +IGH ++ + + Sbjct: 189 NIMALGEHRV-NWSDVEHLLFVKVATGIGCGIVAGGRIHRGERGAAGDIGHIRISGHEET 247 Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDII 315 C CGN C+E +A ++ + + S + G+ A ++ Sbjct: 248 VCRCGNVACVEAVAGGWALAKQLSGLGYPATGS---------RDVVGLVRAGNPAAARLV 298 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 G +G +LA +VN FNP I+IG L+ A + LF I + Q++LP ++H+ + Sbjct: 299 RTAGELIGEVLASLVNFFNPAVIIIGGDLAHAHEQLFAGIRSVVYQRSLPLATRHLQIVP 358 Query: 376 TQFSNQGTMAG-AALVKDAMYNGSLLIRLLQ 405 ++ ++ + G AA+V + + + + Q Sbjct: 359 SELDDRAGIHGAAAMVIEHVLRPETIEEMAQ 389 >UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FQW3_SACEN Length = 405 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 167/401 (41%), Gaps = 7/401 (1%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q ++ ++ N V I G VSR++L+ L +++ IVR ++ LV E Sbjct: 7 QGTNLPRVGGFNRAVVLDTIRAHGEVSRVELAERTGLTAQTMSNIVRALMADGLVAENGH 66 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPL 124 + G+ V L V +A+ + L + I L DL+ + + + + + Sbjct: 67 APSTG-GKRRVLLRVVPDAYSSVGLHLDPESITGVLLDLAGGVRLRSRRRVPQDASPATV 125 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + + Q R R+ + + +PG +D ++ V P ++ L + +EQ Sbjct: 126 AAALTRTLKQLVRRSGIDESRVLGVGLAVPGPLDADHRRVLGPPNLPGWDDVALADLVEQ 185 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 G+PV + +D +A + E + V + VG GV+ + S++ E Sbjct: 186 RAGMPVVMDNDATAAAIGERWAAGKARRGSFVYVYLGAGVGVGVVLGDQVHRGTSNNAGE 245 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGH G+ C CG GCLE S+ +I++ L+ + S + +C+AA Sbjct: 246 IGHVNGGGAGRPCSCGKRGCLEAYCSMRAIVDEW---LSATGSPEGDSVSADYEEICRAA 302 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAADILFPVISDSIRQQA 363 GD A ++ +G+ LA +V++ + +++G P L +++ + ++ Sbjct: 303 AGGDATAVRLLRQAATKLGQALATVVSVLDVDHVVLGGPALRHVEELVRSRVEKTLAAHV 362 Query: 364 LPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRL 403 + + V + GAA LV D Y+ L L Sbjct: 363 WAPAVRPVRVRTALIGEDAGAVGAASLVLDHAYSPRLATLL 403 >UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7D4_DYAFD Length = 407 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 104/401 (25%), Positives = 195/401 (48%), Gaps = 9/401 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 +VAE ID K ++ + Q G S +++L + S T IV +++ + Sbjct: 3 LVAEEPSSVIDIRKNRIRSSLLLHLYQNGDTSINKMAKLFHASIPSATGIVNDLMREGWI 62 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E A GRP V + ++ + L + I+R + L + DL ++L+++ + L D Sbjct: 63 TETGTGPA-RAGRPPVLYGLNSKKYLTLIMDINRHDTQLVIFDLHNQLILKRKVAIRLDD 121 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L+ + + D F + +L I +++PG+I++ GI +PL Sbjct: 122 SANFLEELFASTDDFLKSNNISHSKLWGIGVSMPGLINSSQGINLTYLNLTP-PGVPLVT 180 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L++H +PV + +D A T+ E FG + V+ + ID VG G+I +G + + S Sbjct: 181 YLKEHFDLPVCLFNDTKATTIGEHRFGYAVDKSQVLTINIDWGVGLGIIINGEVFNGASG 240 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QP 294 E+GH QV P G C+CG GCL+TI S +++ A+ ++ +++L + Sbjct: 241 FAGELGHIQVKPDGMLCHCGKVGCLDTITSAIALIRQAKEGIHSGRATILKQIVNNDLEQ 300 Query: 295 LTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPV 354 L + +A GD + D+++ VG +G+ LA V+LFNP+ I++G L++A + Sbjct: 301 LETSHIIEAVHAGDEFSIDLLSTVGTELGKGLATAVHLFNPEVIIVGGLLAEAGPFISNP 360 Query: 355 ISDSIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAM 394 I +I + L + +S+ ++ ++ + G A + D + Sbjct: 361 IEQAINKYCLSDFKNPLSIHISKLGSKARLLGTQAYLFDNL 401 >UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5U1_SORC5 Length = 408 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 105/391 (26%), Positives = 185/391 (47%), Gaps = 5/391 (1%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 A ++ + ++ N V L+ + GP+SR +L+RL+ L +++ I+ E+L++ V++ Sbjct: 4 ANDKTANNRTPRELNRSLVLDLVQEHGPISRTNLARLSGLTKPTVSAIIEELLDSGSVRD 63 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 + + GRPA L ++ +L + I + +A+ D +L Q L+D Sbjct: 64 VGTE--SRGGRPARLLEFNDDSAAFLGIEIGVEQTAVAVADARGRLRARLEQPTVLRDPH 121 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 + I+ + + +RL LPG+I+ +G+ P + P+ L Sbjct: 122 RTVRDIVELLPKVLQLSGVPRKRLRGACAVLPGLIERPSGVCVLAPNL-GWERFPVRAEL 180 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + + V + + A +AE GA+RG + + + VGAG++ DG L Sbjct: 181 SRALRMQVPVYNLPQAAAVAEGELGAARGHASYVWIYVGLGVGAGLVADGRLFFGMQGYS 240 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 EIGH +V G C CG GCLET ASV ++ A+ +S +P V ++ Sbjct: 241 GEIGHCRVADDGPPCGCGRRGCLETFASVMALRRAAEAASARSPQLAALARPHAVSAVAS 300 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 AAL GD A+ I GA + R +A+++NL NPQ I++G L A DIL + D + + Sbjct: 301 AALAGDESARAIFHDAGAQLARGIAVLLNLLNPQLIVLGGELLAAPDILLAGVRDGLPRH 360 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 A+ + V ++ ++ + GA L+ Sbjct: 361 AVRGA--DVPVVASPLGSEAGVLGALLLARE 389 >UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PV61_9ACTO Length = 436 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 94/407 (23%), Positives = 185/407 (45%), Gaps = 7/407 (1%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQ-LGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + ++D++ N V I + +SR++L+ L+ +I+ I R +L+A LV+E Sbjct: 11 RRGTNLDRVGGFNDTVVLDAIRRAEQRLSRVELAAATGLSGQAISNITRRLLDAGLVREA 70 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 +++ G+P L +E + + + + + + L DL+ +++ + D Sbjct: 71 GRQKSAGLGKPRTLLELEPTGQYAVGVHLDPAVVTVVLLDLTGQVIARRRAQTPAADGPD 130 Query: 124 LL-DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 +L I + ++ +R+ + I PG ID + G+V P +PL +AL Sbjct: 131 VLIAGIAATVEDVIAEAGVPRQRVVGVGIAAPGPIDVDRGVVVDPPNLTAWHLVPLRDAL 190 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 TG+PV + D++A AE G G + + +GAG++ ++ SS++ Sbjct: 191 RDRTGLPVLLDKDVTAAASAEKWAGGPNGRGSFVFFYLGTGIGAGLVIGDEVVRGSSSNV 250 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQ---PLTVDS 299 EIGH VDP G C+CG GC+ + +++ A + L + + + Sbjct: 251 GEIGHVIVDPEGPLCFCGRRGCVGESSRPRYLVQQAVDAGVVARGIDLDDRHAVDVAFTA 310 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLS-KAADILFPVISDS 358 LC AA G A++I+T + + +++ + NL + ++++ G P + A I ++ Sbjct: 311 LCTAATGGPGAAREIVTALAERIAKVVEDIANLLDLERVVFGGPHWDRLAPFFGDAIRET 370 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRLL 404 + ++ L +V T GAA LV D ++ + + LL Sbjct: 371 LEERFLVRSVHPFTVTGTALGADVGAVGAASLVLDHTFSPNPSVLLL 417 >UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Streptomyces RepID=B4V8E4_9ACTO Length = 425 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 187/382 (48%), Gaps = 8/382 (2%) Query: 11 DQIKQTNAGAVYRLIDQL-GPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 I++ N R + GPVSR +++ L+ A++ +V E+LEA +++E +++ Sbjct: 16 QDIRRRNRFDALRCVFAAPGPVSRQEIAAATGLSFATVANLVAELLEAGVLREAGHEDSK 75 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--DLPLLDR 127 GRP L V E + + ++ + + L DL+ ++ L D ++D Sbjct: 76 G-GRPRARLAVNAERGALVGIDVAETSVQVELFDLALTVLRGVRLPLPQTDVRPQDVVDA 134 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 I++ ++ + R+ +++PG+++ E G+ P++ +++PL L + Sbjct: 135 IVAGVEG-LSDSAVEAPRILGAGVSVPGLVEREGGVSVFSPYWS-WRDVPLRSLLAERLP 192 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +P+Y+ + + A T+AE FGA R D++ + + VGAG+ DG L ++S E GH Sbjct: 193 MPLYLDNPLKAGTVAEMWFGAGREVDDLVVLTLRAGVGAGIAVDGALYRGATNSAGEWGH 252 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 T + G+ C CG GC+E S I + + +S + + + V + +AA G Sbjct: 253 TCLVRGGRACRCGRQGCVEAYVSSRGIADTVRELDAESP-LLDPDEDVVVTKVARAAAEG 311 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK-AADILFPVISDSIRQQALPA 366 D +A + + ++G A ++NLFNPQ +++G +++ + L D I ALPA Sbjct: 312 DAVAAEAVARTARYLGEAAADLLNLFNPQTLVLGGWVAERLGEPLLRQTRDVIAAHALPA 371 Query: 367 YSQHISVESTQFSNQGTMAGAA 388 Q ++ + + + GAA Sbjct: 372 TLQALTFQRSTVPDNPVTLGAA 393 >UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=1 Tax=Streptomyces avermitilis RepID=Q82LB9_STRAW Length = 424 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 91/380 (23%), Positives = 176/380 (46%), Gaps = 5/380 (1%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 I+ N V R I P SR +L+ L+ A++ +V E+L+ ++ E+ +++ Sbjct: 17 DIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLGMLTEVGFEDSAG- 75 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP--LLDRII 129 GRP + V + + + I+ + + L DL + +++ + P ++ + Sbjct: 76 GRPRGLVAVNSGGGALIGVDIAETYVRVELFDLGLGQLARADEDMRPGESRPEQVVGHVA 135 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 + + + R+ + +++PG +D + GI P + D ++PL L +H P Sbjct: 136 AAVGSVVAQAGVDGARVLGVGVSVPGQVDRDRGIAEYAPNW-DWHDVPLLSLLAEHITHP 194 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 +Y+ + + A +AE FGA+RG D + V + VGAG+ G L S+S E GHT Sbjct: 195 LYLDNPLRACAVAELWFGAARGRGDAVVVNLGTGVGAGLALGGALHRGVSNSAGEWGHTT 254 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 + G+ C+CGNHGC+ET I++ + Q T+D+L + D Sbjct: 255 LVLDGRLCHCGNHGCVETYVGAPGIMQNLRELSPADPLLHPGDQTATIDALARGVAARDP 314 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK-AADILFPVISDSIRQQALPAYS 368 +A ++ ++G +A +VNL NP+ +++ S ++ + L + +++ + AL Sbjct: 315 VALKVVRDTARYLGAGIADLVNLLNPEVVVLSSWVAATLGEPLLDEVREAVARHALRRPF 374 Query: 369 QHISVESTQFSNQGTMAGAA 388 + + GAA Sbjct: 375 ASTEIVLSPIPTDPVCLGAA 394 >UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales RepID=Q0FFU4_9RHOB Length = 421 Score = 333 bits (856), Expect = 5e-90, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 172/381 (45%), Gaps = 6/381 (1%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE-IKEAGNRGRPAV 76 ++ L+ G ++R ++R ++P S+T + E++ ++E+E +RGRP V Sbjct: 34 RQQIFELVRATGRIARAKIARTLDISPGSVTALTAELISDGFLREVEETSRETSRGRPPV 93 Query: 77 GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQ--ELALKDDLPLLDRIISHIDQ 134 L + +A + + +++S L D + SQ K LL + I + Sbjct: 94 ALELVPDALYVIGVKLSDELHTATLTDFGGNALASASQITTADKKSADELLTETEAIIRK 153 Query: 135 FFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQH 194 + +++++I + + GI++ E G+V P E++ + PLG+ + PV I + Sbjct: 154 VCKSAKISQKKISAIGVGISGIVNYETGVVAWSPLLEEL-DTPLGDIFSTYFKTPVCIDN 212 Query: 195 DISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYG 254 D + T+AE FGA R + + I+H VG G ++D L S +E+GH++V G Sbjct: 213 DANVLTLAELWFGAGRALSNFAVITIEHGVGMGFVSDNRLFRGAHSMGLELGHSKVQLDG 272 Query: 255 KRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDI 314 C CG GCLE + ++ A L + SS + SL + A GD + I Sbjct: 273 ALCRCGQRGCLEAYLADYALAREASTALI-TPSSKRQDLNDYLKSLYEMAKLGDQASLKI 331 Query: 315 ITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVE 374 G ++ L+ +++LF+P+ I++ + + + +R AL +E Sbjct: 332 FKRAGRYLAVALSNIIHLFDPKLIILSGKPMQYEFLYDEEMQIEMRSLALYKSRFDTQIE 391 Query: 375 STQFSNQGTMAGA-ALVKDAM 394 + + GA AL + Sbjct: 392 IQSWGSMVWARGATALALTEL 412 >UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=C5BZR0_BEUC1 Length = 393 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 172/383 (44%), Gaps = 14/383 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 G +++ N + + Q G +++++L+ L+ A+I+ IV+E+L A +V E+ Sbjct: 7 TSGSQSSLREANRSLIVDTVKQFGGLTQVELAGATGLSAATISTIVKELLGAGVV---EV 63 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL- 124 + GR A + + +++ + + L D S +V E+S L + L Sbjct: 64 RPTSRSGRRAQMVTLARRVGLAAGVQVGHRSMRVVLGDFSHTVVAEQSLPLPHEHLLDTG 123 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 LDR I R ++ L + + LP +D G++ L + + Sbjct: 124 LDRASLLIADLLERVGSPIDELVGVGLGLPAPVDGATGMISVRGVMRGWDGEHLAHVMSK 183 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 PV++ +D + +AE GASR D + V + +GAGV+ +G + + + E Sbjct: 184 RLARPVHVDNDANLGALAEHTLGASREHLDSVYVRASYGIGAGVVLNGAVYRGYAGTAGE 243 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGH QVDP G C CGN GCL+T+ D++L + LT+ + A Sbjct: 244 IGHVQVDPQGAICRCGNRGCLDTVVGADALLASLRASHGN----------LTLRDVIALA 293 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 GD ++ G +G ++A + NPQ +++G L++ +IL + D++R+ L Sbjct: 294 TDGDRGCARLVADAGEAIGTVVAGLCAAVNPQVVVVGGELAETGEILLGPLRDAVRRGVL 353 Query: 365 PAYSQHISVESTQFSNQGTMAGA 387 + V + + + + GA Sbjct: 354 RNQIAPLEVVAAELGPRAEVLGA 376 >UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=Meiothermus silvanus DSM 9946 RepID=C1XPR1_9DEIN Length = 777 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 84/404 (20%), Positives = 177/404 (43%), Gaps = 21/404 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 ++ ++ G ++K+ N A+ + ++R +L+R L ++I+ ++ +++ LV Sbjct: 380 MSPSRKGDPLEMKRINRRAILEALKGSRSLTRAELARRLGLTKSTISSLMDQLVSEGLVL 439 Query: 62 ELE--IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK 119 ++ GRP V + + L + + D + L+ E + Sbjct: 440 SRGDTLRPKSQLGRPGVEVGLNPAGAVALGAELGVENSVVLAVDWTGTLLFREEWGADPR 499 Query: 120 DDL-PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 L L+R+ RH + + + LPG++D G +H P ++ + Sbjct: 500 TPLSERLERLTQVTRHALQRHPEA----LGLGLALPGVVDA-RGWLHYAPNL-GWRDFSV 553 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 EAL+ PV+I++D ++ E F +G + +++ +G G++ G +L Sbjct: 554 AEALQARLPFPVHIENDANSSAAGEVFFTPRQGQ--LAYLMLGTGLGVGLVHAGTVLRGA 611 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + + E+GH + KRC CG CLET S+ ++LE L G+ Sbjct: 612 NGAFGEVGHW-LGSSPKRCRCGRVSCLETEVSLRAMLEHYH---------ALGGKAKDFW 661 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + + A G LA + + +G +GR++A + ++P+++++G ++A D L + + Sbjct: 662 EVLKQAQTGHRLAVESLAELGRALGRLIANLAVAYDPERVVLGGAGAEAWDYLQQPLRQA 721 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIR 402 + + A Q + V+ + F + GAA + + S +R Sbjct: 722 VEEHAFLRQHQRLEVQPSLFGHLAPAMGAAALVLHSFLASGGLR 765 >UniRef50_C0B3V0 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B3V0_9ENTR Length = 335 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 161/334 (48%), Positives = 237/334 (70%), Gaps = 1/334 (0%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 NQP HID +KQ N G V+RLID+ GP+SRI LS+ A+LAPASITKI RE++EAHL+ E Sbjct: 2 GNQPSHIDHVKQFNLGTVFRLIDEHGPISRISLSKKAELAPASITKITRELVEAHLIHET 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E + G RGRPAVGL +E++ W +L +R+++G + +LR+L SKLV E++ + + Sbjct: 62 EFPDVGFRGRPAVGLKLESQGWQFLCIRVNKGNLLFSLRELDSKLVTEDTFDFPKEYSDD 121 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 L+ + ID+FF R+Q +ERLT+I+IT+ I+D +G+++ P+Y D+K++PL + + Sbjct: 122 FLNHFLVAIDKFFERYQSHVERLTAISITMNAIVDPISGVIYSSPYY-DIKDIPLADKIH 180 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + TGV V++QH ++AWTMAE L+GA++ DV+Q+VID VGAGVI++G LH+ S S V Sbjct: 181 EKTGVSVFLQHSVTAWTMAEYLYGAAKNNLDVLQIVIDDIVGAGVISNGKTLHSHSHSAV 240 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 EIGHT+V CYCG GCLET ++ +++ AQL + +S+L+ P+TV++LC A Sbjct: 241 EIGHTKVIDSENSCYCGAKGCLETEIAIPQLIKKAQLLAQEDPTSLLNKYPITVETLCDA 300 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQK 337 L GD A +I+ V +G ILA+M+N+FNPQK Sbjct: 301 ILVGDKSALEIVNLVAQRLGFILAVMINIFNPQK 334 >UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH51_KOSOT Length = 408 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 80/397 (20%), Positives = 166/397 (41%), Gaps = 12/397 (3%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + G IK+ N + + I + + R +++ L+PA++TKI E++ +V E Sbjct: 9 KRRGSKHLIKEINEKLILKTIYENKKIDRASIAKFTGLSPAAVTKITAELINRGMVLEAG 68 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 E+ GR + L + + +L ++I G + L + D + +V + D + Sbjct: 69 SAESSG-GRKPILLSLNPKFGQFLGVKIGVGYVELVITDFTCTIVESARCDTESSDPGTI 127 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++ I + ++ K L I I + G++D++ GIV F +++P+ L++ Sbjct: 128 VNVIKNCWEKCRQE---KQSILLGIGIAVSGVVDSKEGIVRDS-FLLGWRDVPIASLLKE 183 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 V + +D+ ++ M+ G ++ + + + + +G +I DG + H + E Sbjct: 184 VFKCEVLVMNDVDSFAMSHLWLGKAKDHSNTVVITLGVGIGGALIIDGKI-HNAKGGVGE 242 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILEL-----AQLRLNQSMSSMLHGQPLTVDS 299 IGH V G +C CG++GCLE AS ++ + +L + S+ + ++ Sbjct: 243 IGHMTVVKDGAKCTCGSNGCLEAEASFGALAKKISSITESKKLKELYKSVKQSESSEIEY 302 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L +A R + VG L ++N+ P +LIG + + Sbjct: 303 LREALKRDRKAFNHVFEEYAVLVGIALKNIINMLAPDYLLIGGEALEFQEKFLNKAIQYA 362 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVK-DAMY 395 ++ A + + G V D ++ Sbjct: 363 QKNAFGKLGEKVMFNVDDLGEVAWNLGVIFVLMDNLF 399 >UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TWQ2_9RHOB Length = 405 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 167/394 (42%), Gaps = 12/394 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M ++ P + V + I G +SR D++R +PA++T +L+A L+ Sbjct: 1 MTSDFAPAGTLDARDATRLRVLQCIRSAGTISRTDIARALDSSPATVTSACGALLDAGLI 60 Query: 61 QELEIKEAGN--RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL 118 +E + N RGRP V L + EA+ L+++R I + + D + L Sbjct: 61 REERRMPSENVQRGRPRVMLQINGEAFAVAGLKVAREAIVVMIVDFRGDEIGSFVSPLEA 120 Query: 119 K--DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEM 176 D L+ + +D RH R+ +++ +PG ++ E G +H + + + Sbjct: 121 SCMDPDGLVQEVRRALDAACARHGLDTARIAGLSLGIPGFVNGETGFMHWSSSVTE-RNV 179 Query: 177 PLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLH 236 +H P ++ +D + AE LFGA RG + + V ++H VG G+I +G L Sbjct: 180 DFAPLFRKHLPCPTFLDNDANLVAKAEHLFGAGRGLSNFLVVTLEHGVGMGIILNGELYR 239 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT 296 E+GH +V G C CG GCLE +++ + + + Sbjct: 240 GERGCGAELGHMKVQFGGALCQCGQRGCLEAYVGDYALVR-------DTSTGQQSDAAKS 292 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + + AA GD LA++++ +G LA +VNLF+P+ I++ + Sbjct: 293 IQDILHAARNGDRLAREVLDRASQILGVALANLVNLFDPEHIVLARSRPPFDHPYTEAML 352 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 S+R+ + + + GAA + Sbjct: 353 TSLRRNTVQVDAPLPEITVRNLDEMMWAKGAAAL 386 >UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_RENSM Length = 446 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 171/392 (43%), Gaps = 14/392 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 PG ++Q+N + + GP+++ +LSR L+ A+++ +V+ M + LV Sbjct: 54 PRNPGSQSALRQSNQQRIVETLLNAGPLTQAELSRHTGLSTATVSNLVKIMSDGGLVS-- 111 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DL 122 + GR A + + + + + + R + +A+ L +++ E S +L L + Sbjct: 112 -TAPTTSSGRRATSVRLNSNGAVAVGIDVGRTHVRVAIASLGYRVIAERSIKLPLGHLAV 170 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 + + + + +PG ID+ G V + + + + E L Sbjct: 171 EGVKAAADLLQGLLHDAGLPASAVVGAGVGIPGPIDSRTGTVIQGAILPEWVGINILEML 230 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E VPVY+ + + +A+ +G D++ V I +GAG+I G + Sbjct: 231 EDALKVPVYVDNYANLGALAQVTWGVHSAVEDLVFVKIGSGIGAGLILGGSPYYGNIGVT 290 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 EIGH + G C CGN GCLET+AS ++EL P+T + + + Sbjct: 291 GEIGHATISEQGLICRCGNRGCLETVASTAIMIELLSRGAPA---------PITTEDIIR 341 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A D +I G VGR +A + NL NP+ I++G L++ ++L I + + Sbjct: 342 LAREKDSATLRVIDDAGQAVGRAIANVANLLNPEVIVVGGSLAELGEVLLEPIRRGLIRH 401 Query: 363 ALPAYSQHISVESTQFSNQG-TMAGAALVKDA 393 A+P + + + N+ + GAALV Sbjct: 402 AVPVVGETTHLVMSSMGNRAEALGGAALVFQH 433 >UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSG4_9ACTO Length = 393 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 102/399 (25%), Positives = 186/399 (46%), Gaps = 22/399 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G + I++ N+ V + G VSR +L++ L+ ++++IV E++ +V+ Sbjct: 1 MQPVRVGSKELIREINSSLVLGELR-GGLVSRTELAKRTGLSLPTVSEIVGELIGTGVVE 59 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E EI + GR V L ++ +A + + ++++ + L DL++ +V + +A D Sbjct: 60 EREIA-SSGGGRRPVLLGLKPDAGYVIGIKLTETRVVAVLTDLNAAIVQRATVAVANDDV 118 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 ++ + + + +F + L G+ID +G+V Y D ++ L Sbjct: 119 DTVVRTVAAVVKRFTAKVGPVYGVGV----GLAGMIDRASGVVRHAT-YSDWHDVDLAAL 173 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE+ TG+PV + +D++ E FGA RG DV V I VG G++ DG L Sbjct: 174 LEKRTGLPVVVDNDVNTLVANEQWFGAGRGVSDVAVVSIGRGVGLGMVLDGRLYRGAGGG 233 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E GHT+V P G C CG GCLE++ +IL +++ Sbjct: 234 AGEFGHTKVAPDGPVCACGARGCLESLIGEPAILTATGTS--------------SIEQAV 279 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A GD A+ + VG +G + +VNL NP+ I++ ++A+D+L P ++RQ Sbjct: 280 DLARGGDDAARAVFDHVGRTLGTAVGNLVNLLNPKLIVLAGEGTRASDLLLPGFDTALRQ 339 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSL 399 + + V + ++ GAA L ++ +L Sbjct: 340 AVFDGLQRDLEVVVDDWDDEAWAQGAAGLFLGELFQPNL 378 >UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCD4_BACSK Length = 403 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 179/387 (46%), Gaps = 11/387 (2%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 Q+ + N LI GP+S+ +++ Q++P + I+ ++++ VQE + + Sbjct: 2 QLHEVNRINALNLIRLRGPLSKNMIAKQIQVSPTTAATILNKLIDEGYVQEEGVGHSTG- 60 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR V + ++L ++ + +A +L + E+ ++ +D ++ Sbjct: 61 GRKPVLYRFNPDKSFIIALSLANSSVRIAALNLEGHVRSEQYGQVDSLRGEAYIDFVMKT 120 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 + +F R + KL+ I+I +PGI+ E GIV D+ ++ L + +E G+ Y Sbjct: 121 LSEFIGRFE-KLDECLGISIVVPGIVQAERGIVSYNAKL-DLYDVHLKQKVEAAFGLRTY 178 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 + +D++A MAE FG +R ++++ + + VG+G+ +G + S S EIGH V Sbjct: 179 VDNDMNAMMMAEKQFGTAR-YKEMLFISVGEGVGSGLSVNGSIYRGFSGSAGEIGHMSVL 237 Query: 252 PYGKRCYCGNHGCLETIASVDSIL-ELAQLRLNQSMSSML------HGQPLTVDSLCQAA 304 P G C CGN GCLE + +I + L Q + + + + + +AA Sbjct: 238 PGGPACPCGNQGCLENYVNWPAIYSRILSAWLTQGVKTAIIESAAGRPEAIKPTDFVEAA 297 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 GD A ++ + + + ++L NPQ +++ P + LF +++ I +AL Sbjct: 298 CAGDPFALTVVEEMAESLAVAITNSLHLLNPQAVVLTGPHVQNNLPLFKRLNEKINSRAL 357 Query: 365 PAYSQHISVESTQFSNQGTMAGAALVK 391 ++H V+ + GA V Sbjct: 358 NPIARHTEVKPASLETNKDILGALAVL 384 >UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SD76_9ACTO Length = 390 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 167/375 (44%), Gaps = 17/375 (4%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVV 80 + R + SR +L L + +++ V +++ A+L+ E + GRP L Sbjct: 13 LLRHVRTGRARSRAELVALTGASRNTVSARVDQLIAANLLAEGGRGWSTG-GRPPTLLQF 71 Query: 81 ETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIISHIDQFFIRH 139 + A L++ + + +A+ DLS++++ + + D P+L + Sbjct: 72 NSRAGCVLAVDLGVTSVDVAVTDLSAQVLATVGHPIDIADGPRPVLAEVDRLAQLVLADA 131 Query: 140 QKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAW 199 + + ++ I +PG ++ +G P + P+ A PVY+ +D++ Sbjct: 132 GLEPADVCAVGIGVPGPVEHSSGRPSHPPIMPGWHDFPIPSAFG-RYECPVYVDNDVNVM 190 Query: 200 TMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD-PYGKR-- 256 + E GA+ +DV+ V + +G GVI DG + S +IGH V P G+ Sbjct: 191 ALGEM--GAAGSVQDVLVVKVGTGIGCGVIVDGRVYRGAQGSAGDIGHIHVTTPDGRLVT 248 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIIT 316 C CG CLE +A ++L A T + + A +GD A +++ Sbjct: 249 CRCGQENCLEALAGGGALLRDAVAAGLPVS---------TTREVVERAAQGDGAAIELVR 299 Query: 317 GVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVEST 376 G +G +LA +VN FNP +I++ +++A L I +S+ ++++P ++ + + + Sbjct: 300 EAGRTIGTVLAALVNFFNPHRIVVTGGVAQAGVPLLAGIRESVYRRSMPLAARALEITVS 359 Query: 377 QFSNQGTMAGAALVK 391 + GAAL+ Sbjct: 360 EAPELSGRVGAALMA 374 >UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales RepID=C6Y2I3_PEDHD Length = 408 Score = 330 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 187/394 (47%), Gaps = 13/394 (3%) Query: 9 HIDQIKQTNAGA---VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 ++ + N V +G + DL + L+ IT ++ +++ L+++ Sbjct: 13 NVTGVAYKNVSLKKYVISYFANIGNATIADLCKELNLSAPKITNLLSDLIADGLIKDYGK 72 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLV-VEESQELALKDDLPL 124 E+ GR + ++ ++ + I + I + L +L L+ + E L ++ Sbjct: 73 VESTG-GRKPNLYGLVPDSAFFIGVDIKQNHINIGLSNLQKNLIRITEKIPYHLDNNKES 131 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L+ + I+ F E+L + I L G I+ G + ++ E PL + +E Sbjct: 132 LEALCKLINDFIGELTIPKEKLLGLGINLSGRINYATGYSYSFFYF---NEEPLSKIIES 188 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 G+ V++++D + E G ++V+ + +DH +G G++ +G L + S E Sbjct: 189 KIGIRVFLENDSKSMAYGEFSAGVVEAEKNVLFLNLDHGIGLGILVNGQLYYGKSGYSGE 248 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDS 299 GH + C CG GCLET AS ++ + + RL++ SS+L + L ++ Sbjct: 249 FGHIPMFDNEIICRCGKKGCLETEASGWALTRMFKERLSEGSSSILSQNNTDTEDLKMED 308 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + AA+ D+LA ++I +G ++GR +A+++NLFNP+ +++G L+ + + I +I Sbjct: 309 IINAAIHDDVLAIELIAKIGDNLGRGIALLINLFNPELVILGGSLAATEEYIRLPIKSAI 368 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 + +L +Q +++ ++ + + GA L+ Sbjct: 369 NKYSLSLVNQDTNLKMSKLGERAGIIGACLLVRN 402 >UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQX8_SACVD Length = 443 Score = 330 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 184/399 (46%), Gaps = 13/399 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 V L+ +R ++ R + L +T+ V +++ L++E + + GR Sbjct: 25 LATVLDLVRSGAARTRPEIGRRSGLGRTVVTQRVNQLMACGLLEEGALGPSSG-GRAPRE 83 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFF 136 L A L+ + I + + DL+ ++ E S++ + +L+R+ +D+ Sbjct: 84 LKFRAHAGVILAAELGATSINVGVVDLAGTVLAEHSEDADIAAGPEAVLERVEEVLDELL 143 Query: 137 IRHQKKLER----LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 + + + + + I LPG ++ G P P+ + L + PV++ Sbjct: 144 DQVRAEQNDPDLTVWGVGIGLPGPVEFATGRPSAPPIMPGWDGYPVRDRLARRYNTPVWV 203 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 ++++ + E G++RG RD++ V I +GAG+++ G L +IGH V Sbjct: 204 DNEVNTMALGELRAGSARGQRDILYVKIGTGIGAGLVSGGTLHRGSQGCAGDIGHAAVSD 263 Query: 253 YGK-RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-----QPLTVDSLCQAALR 306 + C CGN GCLE A ++ + S +L +T + +AA Sbjct: 264 ETEVVCRCGNIGCLEAYAGGAALARDGLSAAQEGRSRLLAEVLADTGTITAADISRAAQS 323 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 GD + +++T G +G +LA +V+ FNP ++IG ++ A D+L + +++ +++LP Sbjct: 324 GDRTSVELLTRAGRFIGGLLATLVSFFNPALVIIGGGVAGAGDLLLAAVRETVYRRSLPL 383 Query: 367 YSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRLL 404 ++ + + + +++ + GAA +V D ++ L R + Sbjct: 384 ATRELRIIRSTLNDRAGLVGAAFMVIDELFTPERLARWV 422 >UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH Length = 411 Score = 330 bits (846), Expect = 7e-89, Method: Composition-based stats. Identities = 135/400 (33%), Positives = 224/400 (56%), Gaps = 6/400 (1%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 G ID I+Q N G VY +++ +SR DLSRL L+PASITKI RE+L+ LV + Sbjct: 14 KGSIDLIRQLNYGLVYASLEEHKELSRTDLSRLTGLSPASITKITRELLDGGLVVTCG-E 72 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 + RGR L + + +LS+R+ RG + +AL DL+ + + + + LL Sbjct: 73 SSVGRGRRQTLLRINERRFQFLSMRLGRGYVDMALFDLAGRSLARHRHVFSEGERADLLA 132 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 ++ I+ F KK RL IA+ LPG ++ +G+V PFY D++ PLG L++ Sbjct: 133 SLVRAIEGFL---PKKALRLACIALCLPGQVERHSGMVKHFPFY-DLRNWPLGPTLQEAF 188 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 VPV + D+ W AE +GA++ D + V + +++G G++ +G L+ + S+ L ++ Sbjct: 189 AVPVLVSGDVRTWIQAEREWGAAKNCADAVLVFVHNDIGVGMVVNGQLIESESALLGDLS 248 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 H Q++PYG+RCYCG GC T+ + ++ + L + M + +T+ LC+ AL Sbjct: 249 HLQLEPYGQRCYCGGFGCACTLVTNQALEAQYR-DLRERMQEYDLPESVTIRELCELALA 307 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 G+ L +DI+ + R+L+ ++ L NP K+L+G +++A +LFP++ S+ Q Sbjct: 308 GNSLCQDILHQAAGRLSRVLSNLICLLNPGKLLLGGEITRADRLLFPMLHQSLASQLPAE 367 Query: 367 YSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 Y + +EST F T + V A+ +GSLL+ LL+G Sbjct: 368 YLVRLQIESTHFYEDPTKPTSVQVHKALRDGSLLLDLLRG 407 >UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS614 RepID=A1SG81_NOCSJ Length = 400 Score = 330 bits (846), Expect = 8e-89, Method: Composition-based stats. Identities = 103/392 (26%), Positives = 177/392 (45%), Gaps = 16/392 (4%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 Q G + +++ N V I+Q G +SR DL R L+ ++++ +V ++L+ ++ E Sbjct: 1 MAQGGSLGELRAANLALVISTIEQTGALSRADLMRRTGLSRSTVSSLVVQLLDQGVLVER 60 Query: 64 ---EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 G GRP + L + + + + +AL S +V+E S L + D Sbjct: 61 LDRGTPYKGRSGRPPILLELAALTGVVAGIDVGHRHVRVALARPDSTIVLERSVALDVDD 120 Query: 121 -DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +DR+ + +D+ +L + + +PG +D + + + Sbjct: 121 SPRESMDRVATLLDELLAESGHELSDVRGAGLGIPGPVDRGGRM--TSGILPTWRGLQPA 178 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L + TGV + +D E +GA+ G RDVI V +GAG+I DGHL+ + Sbjct: 179 AELAERTGVIARVHNDAHLGARGELAYGAACGHRDVIYVKASTGIGAGLIVDGHLVTGAT 238 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 E+GH QVD G C CG+ GCLET S ++EL Q + + LTV Sbjct: 239 GIAGELGHVQVDVNGVMCRCGSRGCLETEVSGPKLVELLQPA---------YDEQLTVPR 289 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + + A GD A + G +GR+LA + N+ NP+++++G A L I D++ Sbjct: 290 ILELAQSGDAGATRALNDFGRRIGRVLANIANMLNPEQVVVGGGFGAA-PALQAGIRDAL 348 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 + + P + I+V + + GA V Sbjct: 349 DRYSQPTTAAAITVLGGALGERAEVMGAIAVA 380 >UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRA6_9BACI Length = 387 Score = 330 bits (846), Expect = 8e-89, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 172/386 (44%), Gaps = 11/386 (2%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 ++KQ N + + + QL P+SR DL+++ L A+++ +V E+++ H ++++ + ++ Sbjct: 7 EVKQQNKKLILKTVYQLEPISRADLAKVLSLTKATVSNLVDELVQEHYLEQVGLGKSSG- 65 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR + L + +A + +S+ I I L DL ++ + + + I + Sbjct: 66 GRRPLMLKINEKAGYTISVDIGVNYIRSILTDLKGGIMKKAVETTDTNVYEDTMRYIETM 125 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 ++ L I +PG++D++ G V P D +E + + E V V Sbjct: 126 VNNLINDMDDAPFGLVGIGFGVPGLVDSD-GTVISTPNL-DWQESDIRKRFEAAFDVHVI 183 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 ++++ +A E FG + I + +G G+I DG L + E+GHT + Sbjct: 184 VENEANAGAFGEKSFGEGISSDHFIYISGGIGIGVGLIFDGVLYRGRNGFTGELGHTIIQ 243 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 G C CG GC E AS IL+ + LT++ A D Sbjct: 244 MDGLTCSCGKKGCWERYASELYILKEYEKLKGMPW------HQLTLEEAVTEAAA-DEDV 296 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 + I H L ++N FNP+KI++G+ L++A + PVI + I + A+ ++ + Sbjct: 297 RAIFHRAARHFAIGLTNIINSFNPEKIIVGNRLTQAEQYMLPVIEEVIAETAISPIAKGV 356 Query: 372 SVESTQFSNQGTMAG-AALVKDAMYN 396 + T+ G +A + ++ Sbjct: 357 GIHFNNTDQLATVLGLSAFSIERFFD 382 >UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899E8 Length = 386 Score = 330 bits (846), Expect = 9e-89, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 174/389 (44%), Gaps = 13/389 (3%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 D +K+ N V+++I P+SR +++ ++P ++++IV E+ E V E E + + Sbjct: 5 DQDFMKRQNRLTVFQIIKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQAS 64 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-LDR 127 RGR + + + A + + + R + + D+ ++ S + + + + R Sbjct: 65 AGRGRKSSLIRLLDTAVISIGVELDRHQANIGFIDVQGNVLCSGSFSRSSDETADVTVTR 124 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 I I++ R+ I + LPGIID + GIV+ K + L E L++ TG Sbjct: 125 IAETIEELIAECDIDRRRVVGIGVGLPGIIDVDAGIVNFSVQL-GWKNVGLAERLKELTG 183 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 + + +++ +AE L G++ G+ + + + VG+ +I +G + ++S EIGH Sbjct: 184 LQAVVDNELKVKALAEQLKGSAYGSNRTVLLGFGNGVGSALILEGEIYRGVTNSAGEIGH 243 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 T VDP G C CG GCL+T ++ S+L A T++ L G Sbjct: 244 TTVDPEGMMCDCGKAGCLQTYINIPSLLSEASKIKP----------VRTIEELFAERRAG 293 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD-SIRQQALPA 366 A +I A++ + +V+++NP +++ ++ I+D Q Sbjct: 294 TRWASYLIDRALAYMAITINNVVSMYNPDSVILSGEFLDKFPEVYEEITDLCYSQYIWEP 353 Query: 367 YSQHISVESTQFSNQGTMAGAALVKDAMY 395 S+ ++ G G+ LV Y Sbjct: 354 LQDSFSIVRSELHEHGVTIGSGLVAQDRY 382 >UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZX8_DEIGD Length = 408 Score = 329 bits (845), Expect = 9e-89, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 171/382 (44%), Gaps = 13/382 (3%) Query: 35 DLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR---------GRPAVGLVVETEAW 85 DL+R L+ ++I+ IV E+++A LV+E + AGN GR A L + A Sbjct: 2 DLARELGLSRSAISSIVTELMDAGLVREAGQRVAGNGASRGAGGPVGRRATLLSLNARAA 61 Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFFIRHQKKLE 144 H L++ + + L DL + + + L+ + E Sbjct: 62 HLLAVDLGASHARVDLLDLRCTTLATRTAQHDILRGPAATYALLKELAQAVLEEAGVPRE 121 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 R+ ++ +PG +D G V + P + LE+ +P + +D + +AE+ Sbjct: 122 RVAAVGAGVPGPVDYATGCVVQPPNMPGWDGENVMAGLERVLDLPTRVDNDANLGALAES 181 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 FG RGA D+I V + +GAGV+ G L EIGH ++ G GN G Sbjct: 182 RFGVHRGAADLIYVKVATGIGAGVLLGGRLHRGVRGGAGEIGHISINEQGPVGRSGNPGS 241 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGR 324 LE+ A+ +LE A+ R + S L PLT+ L A D LA+ + G H+G Sbjct: 242 LESYAAAQVLLETARARRAGGVPSTLP-DPLTLADLIAFANT-DPLARAVWAEAGHHLGV 299 Query: 325 ILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTM 384 ++ +NLFNP ++IG L++A ++ + +S + + + ++ + + Sbjct: 300 AISTALNLFNPSAVVIGGRLAQAGEVFLHAVRESALSRTMRINADRARIDLSTLGEGAGV 359 Query: 385 AGA-ALVKDAMYNGSLLIRLLQ 405 GA A++ D ++ + L L + Sbjct: 360 LGAGAMLLDHLFTPAGLRHLYR 381 >UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GID9_9FUSO Length = 398 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 75/396 (18%), Positives = 180/396 (45%), Gaps = 9/396 (2%) Query: 11 DQIKQTNAG--AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 +I++ N + + + VSR DL++ +L A+I+K +++++ +++ E E+ Sbjct: 7 KKIRKLNRTDYRILEKVMKDSEVSRTDLAKEMELTSAAISKAIKKLMLQNIIMEHATLES 66 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 GRP L+V E + + + G I + L+ +++ ++ K +LD + Sbjct: 67 TG-GRPRKSLIVNKEYKKIIGVNLGAGFINIVASHLNGEIIQIRQRKFVYKTQEKVLDLL 125 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 I + + E + I + G++D + G V P ++ K++ + LE+ + Sbjct: 126 YEGISDMVEKFGE--ESIIGIGLATHGLVDRKKGTVIFSPHFK-WKKLDIRRELERKFNL 182 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 V +++D+ A AE ++G + ++ + + I + VGA + +G + + S E+GH Sbjct: 183 KVIVENDVRAMLTAEHMYGCAGNMKNFMLLYIRNGVGAAIFLNGKIFEGSNYSAGEVGHF 242 Query: 249 QVDP-YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 V+ +C CG GCLET S +++ L + + + +T+D + + Sbjct: 243 IVNEKSTIQCRCGKFGCLETECSEQALINKVVWELEKKDKNE-SKEKITIDKIYSRSKHK 301 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + I+ G+++ ++N+ + +++ + + + + L + Sbjct: 302 EEPYYSIVKEAAYETGKVIGNILNILDIDNVVVAGDIIMTEKLYMNNFRKGVDRMILEDF 361 Query: 368 SQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLLIR 402 ++ + + S+ + + GA +LV ++ G L++ Sbjct: 362 NKKVKIVSSALDDMIGIYGAISLVTSNLFVGEKLMK 397 >UniRef50_C9YT50 Putative ROK family transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YT50_STRSW Length = 429 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 184/380 (48%), Gaps = 5/380 (1%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 I+ N V R I P SR +L+ L+ A++ +V E+L+ ++ E+ +++ Sbjct: 10 DIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLRMITEVGFEDSAG- 68 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP--LLDRII 129 GRP + V + + I+ + + L DL+ ++ + + ++LP ++ + Sbjct: 69 GRPRGLVAVNASGGALIGVDIAETYVHVELFDLALNVLARAEENVRPGENLPEQMVGHVA 128 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 + + + + R+ + +++PG +D GI P + D ++PL + L +H P Sbjct: 129 AAVGSVVAQAGIEGARVLGVGVSVPGQVDRATGISEYAPNW-DWHDVPLLDLLTEHIAYP 187 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 +Y+ + + A +AE FGA+RG D + V + VGAG++ G L S+S E GHT Sbjct: 188 LYLDNPLRAVAVAELWFGAARGHGDAVIVNLGTGVGAGLVLGGGLHRGVSNSAGEWGHTT 247 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 + G+ C+CGNHGC+ET I+ + +S Q T+ +L + R D Sbjct: 248 IVLDGRLCHCGNHGCVETYVGAPGIMLNLRELSPRSTLLHPEDQTATIAALARGVARQDP 307 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA-ADILFPVISDSIRQQALPAYS 368 +A ++ ++G +A +VNLFNP+ +++ S ++ A + L + +++ + ALP Sbjct: 308 VAVKVVRDTARYLGAGIADLVNLFNPEVVVLSSWVAAALGEPLVAEVREAVARHALPRPM 367 Query: 369 QHISVESTQFSNQGTMAGAA 388 + + GAA Sbjct: 368 AATDIVLSLIPTDPACLGAA 387 >UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZML3_9FIRM Length = 410 Score = 328 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 100/400 (25%), Positives = 177/400 (44%), Gaps = 17/400 (4%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M N I KQ N G +++LI +RI+LSR LA ++T IV E +E +V Sbjct: 23 MKKGNGKNSITS-KQFNRGLIFQLIATGTCNTRIELSRRTGLAKTTVTNIVAEFMEKGIV 81 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 +E E + GR + L V +A + + + R I L L ++ E+ E Sbjct: 82 KECEEELTEVCGRNPIILKVADQAPKIIGILVFRTNIQAVLCSLDMQIFRTETIEFGELT 141 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L+ ID+ + + I I G +D NGI+ P + VK +P+ E Sbjct: 142 GDILIQNAFELIDRMMEEE----KNILGIGIASIGPVDIRNGIILNPPRFYGVKHVPIKE 197 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 A+++ +PVY HD + +AE LFG + +D + + + + +G+G + G + H+ Sbjct: 198 AIQKKYNLPVYFDHDNNCAALAEKLFGIGKAEQDFLLLAVSNGIGSGFVCGGEVFHSHRG 257 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 E+GH ++ G +C CGN GCLE AS + E + ++ + + + Sbjct: 258 FETELGHVSINCKGLQCSCGNRGCLEMYASSYVVREKLKKITGLNLPYADYFKIHDRPEV 317 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 +DI+ + + L ++N+ P+ I++G + + I Sbjct: 318 -----------EDILEEMIQDISAGLVSIINMLQPEMIVLGYDGIDWPEDYVKKLEILIN 366 Query: 361 QQALPAYSQHISVESTQFSNQGTMAG-AALVKDAMYNGSL 399 + + +I V+ F Q + G AALV ++++ G L Sbjct: 367 DRKIAQDGWNIPVKKAYFGKQAQLVGAAALVVNSIFKGEL 406 >UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=Actinomycetales RepID=D1BAX4_SANKS Length = 410 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 176/391 (45%), Gaps = 5/391 (1%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 ++ + AV R L +R +LS+ L+ A+++ +V+E L A +V +E + Sbjct: 8 DLRSDSRSAVLRAFFSLRTATRQELSQHTGLSVATVSTLVKEFLTAGVVH-VEAVVSSGV 66 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP--LLDRII 129 GRP L ++ + + + ++ + + DLS S L + P ++D I Sbjct: 67 GRPLEQLRLDPSRGYIVGVDVAETYVETTVFDLSLDPRGTVSVPLDEHQNSPQYVVDGIR 126 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 + + + ++LPG + + G+ P + ++ + E L G+ Sbjct: 127 LAVHGVLALAGVSTSSVVGVGVSLPGQVQPDLGVSVFAPNWA-WHDVRIKELLTAELGMH 185 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V++ + + A +AE FGA R RD+ V + VG+G++ +G L+ S++ E GHT Sbjct: 186 VHVDNPLKAIAVAELWFGAGREHRDLAIVNLGTGVGSGLVINGELVRGVSNNAGEWGHTL 245 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 + G+ C CG GC+E V+ + + + Q VD++ + + GD Sbjct: 246 LALDGRLCRCGRQGCVEAYVGVNGMKATLSEIQPDHPALLQQEQRRFVDAVYEGVVAGDP 305 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAADILFPVISDSIRQQALPAYS 368 + +++ ++ L +VN+ NP+ +++ +++ D L P++ I AL + Sbjct: 306 VFVELVDETARYLAASLGDLVNMINPEHVVLTGWTVARLGDWLIPLVRAKIPDAALRSSV 365 Query: 369 QHISVESTQFSNQGTMAGAALVKDAMYNGSL 399 ++V ++ ++ G + + + ++ Sbjct: 366 AVLTVSASSLASSTVALGMSTLTLEHFLAAV 396 >UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifidobacteriaceae RepID=B3DR20_BIFLD Length = 389 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 176/391 (45%), Gaps = 14/391 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 +A G +++ N + I + G +++++L+ + L+ A+++ +V ++++ Sbjct: 1 MATRLFGSQTSLREANRANLLASIHKFGAMTQVELAEVTGLSTATVSTLVHQLVDED--- 57 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KD 120 +LE K GR A + + + L I+R + L++ D S ++ E + L L Sbjct: 58 QLETKSTVRNGRRATLVTLARHQGLGVGLWIARRHLTLSIVDFSKSIIAEHTLPLPLGHK 117 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L+R + I++ + L I + + + T + + + + Sbjct: 118 ADTTLERAMLLINETLSSIDAEASELVGIGVAVAAPVATSDHTIAIPGILPGWDGVDITS 177 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L VPVY+ +D + E+ G + G R+ + + VGAG++ +G ++H + Sbjct: 178 PLRTAFNVPVYVDNDANFAAYGESRMGVAAGKRNFVYISASDGVGAGIVINGEIMHGVTG 237 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 EIGH QVDP G C CGN GCL+T+ + + +++L S+ HG +T+D L Sbjct: 238 LAGEIGHIQVDPLGAICSCGNRGCLDTVVAENRLVQLL---------SVTHGN-MTLDDL 287 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 A GD + II +G++ A + +P+ I++G L+ D+ +++++ Sbjct: 288 VSFANEGDPGCRRIIADAAVRIGQVAADLCISVDPEVIVLGGKLAMTGDVFIQPFNEALQ 347 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVK 391 + P I V + + G AL Sbjct: 348 RMLFPDAVAPIDVLVSSHPDDNCALGGALCA 378 >UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YJZ1_NOCDA Length = 396 Score = 327 bits (839), Expect = 5e-88, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 178/386 (46%), Gaps = 8/386 (2%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 A PG +++ N V ++ + G ++ +L+R L+ AS++ IVR + A V Sbjct: 4 AAATPGSQSALRRANERRVVDVLRREGTRTQAELARATGLSAASVSNIVRGLRAAGTVL- 62 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDD 121 +++ + GR A + + + +++ + + +A+ D ++ E + D Sbjct: 63 --VRDTSSNGRRAKAITLVRQPGAVVAVDFTADSVRVAVGDSDGNMLAREEIGYDVASDA 120 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + R + +R + ++S+ ++PG ID G V + Sbjct: 121 ERGVRRAAWLAETILLRSRVDRGTVSSVVASIPGPIDPGTGEVGGISCLPRWAGFRPARE 180 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L + G+ V ++D + +AE GA GA V+ +V++ VGAG++ G L + Sbjct: 181 LTERLGLEVLAENDANLAVLAEQHRGAGVGAEHVVHLVLNDGVGAGIMMSGQLFRGAGGT 240 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH +DP G C CGN GCLET +L++ L Q+ P+ + + Sbjct: 241 AGEIGHIALDPRGHVCRCGNRGCLETFVGASYLLDM----LPQNTDVARGPDPVRIPDMV 296 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 AAL GD ++ II G +G+ AI+ NLFNP ++++G L++A D+L + S+ Sbjct: 297 AAALEGDPGSRRIIAEAGTALGQGTAIVANLFNPDRVVVGGELAQAGDLLLDPMRRSMEL 356 Query: 362 QALPAYSQHISVESTQFSNQGTMAGA 387 +L + + + + ++ GA Sbjct: 357 GSLSSALDRLELVPSALGRDASLYGA 382 >UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUR2_ACICJ Length = 398 Score = 327 bits (838), Expect = 6e-88, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 173/391 (44%), Gaps = 13/391 (3%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + +++ N+ ++ +I Q +S+ LS+++ + PA+I+ I+ + +V+ Sbjct: 7 NSALVRRINSARLFHMIRQNPGISQQKLSQISGIDPATISIIINNLESGGIVRRDTDAPT 66 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 G GRP L ++ A + + + I + + + + + + Sbjct: 67 GRAGRPTTALSLDPRAGYLAGISVEPDAIRIVISTIDGTACADLAVP-GSTAPEAAIAAA 125 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 S + + L + + +P ++ + G + P +++ + E L Q V Sbjct: 126 RSGVTAALRSLRATRATLLAAGVAMPALV-STGGRIVFAPNI-GWRDLDVAENLAQKLKV 183 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PV +++D+ A +AE LFGASR D + V+ +G G+ G L EIGH Sbjct: 184 PVRVENDVKAAALAEHLFGASRDIADFVYVMGRSGIGGGLYLMGELYRGPHGLAGEIGHM 243 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 ++ P G+ C CG GC E S +IL R + + V S+ +A GD Sbjct: 244 KIVPGGRACGCGGQGCFEAYVSEKAILSDLAARGHGARD---------VASVRKACEAGD 294 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 +A+ ++ G H+G LA ++N+ +P++I++G L++ A L P +++ AL A Sbjct: 295 PVARAVLAEAGRHLGLALANLINIISPRRIVLGGSLAQLAPFLLPAAMETLEANALAAIY 354 Query: 369 QHISVESTQF-SNQGTMAGAALVKDAMYNGS 398 + + + ++ + M G AL + Sbjct: 355 RDVEIVVSEMSGSAAAMGGIALALQQFLDDP 385 >UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357A7 Length = 405 Score = 326 bits (837), Expect = 8e-88, Method: Composition-based stats. Identities = 79/403 (19%), Positives = 176/403 (43%), Gaps = 13/403 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + ++ ++K+ N + +I + GP+SR ++ + L P +IT V ++E LV E Sbjct: 2 TARGTNLPRVKKQNEALIKEIIYKYGPISRSKIAEMLSLTPPTITTNVTSLIERGLVYEF 61 Query: 64 EIKEA----GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK 119 ++ + GR V + EA + + + ++ + + DL + + Sbjct: 62 AADDSDVEERSLGRKPVKINFVQEAKYAVGVEMNPYHTAICMLDLRGNEKISMRYPPMNR 121 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 + +D + +I++ + E++ + + LPG ++ + G++ F + + Sbjct: 122 TYVEEMDVLARNINKLIQDSGTEPEKILGVGVGLPGFVEPDVGVLRES-FKTEWNGKNIA 180 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L + +PV I+++ + E +FG + +I + + + ++ + Sbjct: 181 RDLSRRLDLPVLIENNARVRAIGEEMFGKTLRPDSFAYYLISYGIACPLFVKNRMITGDN 240 Query: 240 SSLVEIGHTQVDPYGKRC-YCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-----Q 293 +S E GH VD G +C CG++GCLE +AS +I++ + +S+ML + Sbjct: 241 ASAGEAGHMVVDINGPKCETCGHNGCLEELASERAIIKKCKAAARAGVSTMLTELCPDIE 300 Query: 294 PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFP 353 LT+ + A D ++ ++G LA ++NL +P +++ + K Sbjct: 301 GLTMKDVLMAEECNDAYVVKVMEEAVMYLGVTLANIINLISPPLVIVDGYMMKVKRNRRQ 360 Query: 354 VISDSIRQQALPAYSQHISVESTQFSN-QGTMAGAALVKDAMY 395 ++ ++ ++ Q I +E F+ G GAAL ++ Sbjct: 361 LLEET-KKHIFGLNDQEIEIEFIDFNPLTGARGGAALAIKQLF 402 >UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZA5_JONDD Length = 425 Score = 325 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 179/394 (45%), Gaps = 10/394 (2%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 V I G +SR+ ++++ L A+++ +VR++L+AHLV E+ E+ G+P V L Sbjct: 15 SVVLDAIRAAGTISRVGIAQVTGLTGATVSTVVRKLLDAHLVIEIGRAESTG-GKPRVLL 73 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFFI 137 + A + + + + G I A+ +L+ V ++ ++ R+ I+ Sbjct: 74 ELNPTARYAVGVHLDHGAITYAVTNLAGAPVARLARPGPGNASPADVVIRMADEINMLVE 133 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDIS 197 ++L + + PG + + G+ PF ++ PL L +PV +++D + Sbjct: 134 SIGIARDKLLGLGLVSPGPLSSRAGMHLTPPFMRSWEDFPLDTQLADVAQLPVLLENDAT 193 Query: 198 AWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRC 257 A + E G ++ + + +GAG++ +G S + EIGHT + G C Sbjct: 194 AAAIGEYWSGGTQREESFAALYLGTGLGAGIVINGTAYRGTSGNAGEIGHTCANIDGPEC 253 Query: 258 YCGNHGCLETIASVDSILELA----QLRLNQSMSSMLHGQPLT--VDSLCQAALRGDLLA 311 +CG GC E +A +++ A ++ ++ ++ P+T ++ +A+ GD + Sbjct: 254 WCGARGCFEALAGPAAVVNEAYSDPRIVTAAALDTLGDHTPITQRFAAIARASRMGDTPS 313 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILI-GSPLSKAADILFPVISDSIRQQALPAYSQH 370 + ++ +VG + NL + + +++ GS + A+ I P I D++ + Sbjct: 314 RQLLERSARYVGVAAQSVANLLDVRMLVLTGSSFAAASHIYVPAIRDTLAASFFARDNHA 373 Query: 371 ISVESTQFSNQGTMAG-AALVKDAMYNGSLLIRL 403 + V+ +Q + G AALV A + L Sbjct: 374 VHVQLSQSAETAPAIGAAALVLQAQFVPERSTSL 407 >UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX6_9ACTO Length = 396 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 177/387 (45%), Gaps = 14/387 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 PG +++ N V ++ Q GP+++++++ + L+ A+++ +V+E+ +A LV Sbjct: 3 ATRPAPGSQASLREANRERVLGVVRQHGPLTQVEIAAASGLSAATVSNMVKELDQAGLV- 61 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD- 120 + + GR AV + + + + ++ +A+ S +++ E+ L Sbjct: 62 --GLSPSIRNGRRAVLVSLASGGGLLAGVAFGERDVRVAIASESREILAEQLMPLQADHV 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 ++R + +++E + +I LP +D+ +G + + + E Sbjct: 120 ADDGMERAARLLADLTESVGQRVEDIGAIGFGLPTPVDSVSGEAGSDAVLPGWRGVHVAE 179 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 A+ + PV + + + + E GA R + + + VGAG++ G + + Sbjct: 180 AMSGYLRAPVVLDNTANLAALGELRAGALRDVQHGCYIKFSYGVGAGIVLGGEVFRGSAG 239 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGH +D G C CGN GCL+T ++L PL + + Sbjct: 240 TAGEIGHLTIDENGPICRCGNRGCLDTFVGSRALLNSLAASHG----------PLRLRDV 289 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 AL GDL + +I G VG +A +VNLFNP+ I++G L++A +++ + +++ Sbjct: 290 ITRALAGDLGCRRVIEDAGRRVGVAVAGLVNLFNPEVIVVGGKLAEAGELVMLPLREALD 349 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGA 387 + A+P+ + + + + + + GA Sbjct: 350 RCAIPSAAATVELRPAELGDTADVLGA 376 >UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUP6_ALKMQ Length = 392 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 177/390 (45%), Gaps = 13/390 (3%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 DQIK+ N + +I Q +++ +++ +L+ +IT + +++E LV+E + + Sbjct: 8 SQDQIKEINRSNIINMIKQKYEITKHEIAVALKLSIPTITTNINQLIEEGLVEEAGVGNS 67 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDR 127 GR + L + A + + +S ++ + L DL++ ++ E S + +LD Sbjct: 68 TG-GRKPMILKLVENARFSVGVDVSPDKVRILLIDLNNTIIDEASFDYVKDLSFKGVLDE 126 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 + + I++F ++ ++ + I+LPG++D + I+ P V++ E + Sbjct: 127 VKTEIERFMTQNNISKNKILGVGISLPGLVDEDRLILENAPNI-GVRDFNFQE-FQDSLQ 184 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 + V+I+++ + AE G + R+V+ V I VG G+I + H+ + + E GH Sbjct: 185 LRVFIENEANIAAYAEKEIGKTVNMRNVVYVSITEGVGTGIIVNQHIYKSSNKKAGEFGH 244 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 ++ + C CG GC E AS ++ + +S T+D + Sbjct: 245 MRISDEPRPCNCGRTGCWELYASKKALSRYYEESTGLKVS--------TLDEIFSEESFN 296 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 K+ I + + ++ NP+ ++IG L K + +I+ ++ Sbjct: 297 MPSVKEAIGRYIDCLFIGIENIILGLNPEFVIIGGELGKYEKEMLTLINGRNNMKSSFVE 356 Query: 368 SQHISVESTQFSNQGTMAGAALV-KDAMYN 396 + V + ++G++ GAAL+ + ++N Sbjct: 357 YEGTKVVFSALKDKGSLIGAALLPLEDLFN 386 >UniRef50_Q185Y3 Putative regulator of a specific sugar metabolism n=6 Tax=Clostridium difficile RepID=Q185Y3_CLOD6 Length = 404 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 187/403 (46%), Gaps = 6/403 (1%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M++ Q +I +K N + +L+ P+SR+DL++ L +++ +V E++ +++ Sbjct: 1 MMSNKQGSNIKDVKIKNKLIILKLLSTNTPMSRVDLAKSTGLTKMTLSNLVTELINENMI 60 Query: 61 QELEIK--EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL 118 +E+E A + GR + L + + + I R + + DL +V + S+ Sbjct: 61 REIESSTLNAHSSGRKPILLDISNISPCICGILIRRNICKVIISDLKGNIVKQLSETYPK 120 Query: 119 KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 +L II + ++ K+ I+ P +D NG + P + +V + + Sbjct: 121 CLSNDVLKDIIKRMFTKIMKINKRDIIGIGISSIGP--VDDINGTILNPPDFGNVSNLNI 178 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 + +++ + +P+++ +D ++ +AE ++G + + I + I + +GAG++ + L Sbjct: 179 VDFIKEMSDLPIFLINDANSGALAEKMYGLGKNISNYIYLHIMNGIGAGLVLENKLHTGN 238 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-HGQPLTV 297 EIGHT ++ G C CGN+GCL+ SV ++++ + + +S L + + ++ Sbjct: 239 LGQSGEIGHTSINFSGPLCSCGNNGCLDYYTSVSNLIKRIESLSHIYPNSPLINCKDFSL 298 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 L A D LA ++ +V L + L + I+IG + + + Sbjct: 299 VKLIDEANNKDSLAMFLLDEFCTYVSYALVNTLTLIDCSSIIIGYDFNIPGTFIENTLLK 358 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSL 399 + A + + ISV + F + G+ A+V +NGS+ Sbjct: 359 KLTASASFSKYKKISVRHSNFGANAPLIGSIAIVSYNFFNGSI 401 >UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyces RepID=B5I1X5_9ACTO Length = 408 Score = 323 bits (830), Expect = 6e-87, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 169/398 (42%), Gaps = 20/398 (5%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 P +++ N V + GP+SR ++ L A+++ +V E++ + L++EL + Sbjct: 24 PDTQQGMRRRNLARVMHTVSAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEELGPE 83 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--DLPL 124 G GRP L V + + + + DL ++ + A + P+ Sbjct: 84 RPGRVGRPGSALAVSGRGPAGIGAEVGVDHLAVCAVDLRGQVRSRAVRYGANRGRSPEPV 143 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + + S + Q + + +A+ +PG++ + V R P D + LG L Q Sbjct: 144 IAELASLVSQVVAEGEGEGLWPAGLAVAVPGLVARDVRTVVRAPNL-DWHDTDLGALLPQ 202 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +P+ + ++ + +AE G D + V + +GA ++ DG LL E Sbjct: 203 --DLPLTVGNEANFGALAELWLGDGTPH-DFLHVSAEIGIGAALVVDGQLLRGTRGFAGE 259 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 +GH V P G RC CG GCLE A +++L A L + + L Q A Sbjct: 260 LGHVPVHPDGPRCPCGGRGCLEQYAGEEAVLRAAGLEPGEDRVGL----------LAQHA 309 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 GD + + G +G L VNL +P+ +++G L+ A L P + D + ++ Sbjct: 310 ADGDEAVRGALREAGQALGIALTGAVNLLDPEAVVLGGALAGLAPWLLPSLRDELARRT- 368 Query: 365 PAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLI 401 V + +QG + GAA V A+ + ++ Sbjct: 369 --AGPACPVSVSGLGSQGPLLGAAHSVVRAVLDDPAVV 404 >UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobacterium dentium RepID=D2Q6V0_9BIFI Length = 390 Score = 323 bits (829), Expect = 8e-87, Method: Composition-based stats. Identities = 94/406 (23%), Positives = 182/406 (44%), Gaps = 17/406 (4%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 +A G +++ N + I + G +++I+L+ + L+ +++ V +++E Sbjct: 1 MARRTNGSQTSLRRANKANLLESIHKFGAMTQIELAEITGLSTGTVSTQVHQLVEEG--- 57 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD- 120 +LE GR A + + + + L I+R ++FL + D S ++ E L K Sbjct: 58 KLETHNTIRNGRRATLVALSHDQGLGVGLSITRRDLFLVIIDYSKDIIAEHRLPLPPKHK 117 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L+R I I++ + I + L +D + + Sbjct: 118 ADTTLERAIRLINETLENAGTDAGEIVGIGVALGAPVDFHAQTAAIPGILPGWDGIDIHT 177 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L VPV + +D +A + EA G + G ++ + + + VG+G++ +G ++H + Sbjct: 178 PLTTAFHVPVMVDNDANAAAICEARMGVALGKQNFVYIGTNDGVGSGIMVNGDIMHGVTG 237 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 EIGH QVDP G C CGN GCL TI ++ S+ S+ HG +T++ L Sbjct: 238 LAGEIGHIQVDPLGSICSCGNRGCLNTIVDEARLV---------SLLSVTHGN-MTMEDL 287 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 Q A GD + +I +G + + + +P+ +++G L+ + D S++++ Sbjct: 288 VQTANAGDPGCRRVIADAAVRIGTVASDLCISVDPEMVVVGGSLAMSGDTFIEPFSETLQ 347 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 + P I V + Q+ + G+ GAA++ + +LLQG Sbjct: 348 RLLFPNALTPIQVLAAQYPDSGSALGAAIMVIELAEKK---KLLQG 390 >UniRef50_C1D0G6 Putative transcriptional regulator, NagC family n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0G6_DEIDV Length = 440 Score = 323 bits (828), Expect = 8e-87, Method: Composition-based stats. Identities = 98/403 (24%), Positives = 185/403 (45%), Gaps = 5/403 (1%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + P + I+ + + +L+ + +R+D++R ++ ++I+ IV E++ LVQE Sbjct: 6 SAPLDLAAIRARHTALLLQLLWER-DRARVDIARDLGMSRSAISSIVSELIGVGLVQEGN 64 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLP 123 + +G GR A L + A L++ + + + L DL + + + + Sbjct: 65 TRGSGRAGRRATLLSLNARAAALLAIDLGASHVRMDLMDLRCRTLASRTVPHEVISGPAE 124 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 ++ D + + + + +PG +D + G V R P P+ EAL+ Sbjct: 125 TYHLLLRLADAVQREAHVPADHVALVGLGVPGPVDQDTGRVIRPPNMPGWDGEPVREALQ 184 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 +H G+ V + +D + AEA FG RG D+I V +GAGV+ G L Sbjct: 185 RHLGLEVLVDNDANLGAQAEARFGPHRGVSDLIYVKAATGIGAGVLLGGRLHRGVRGGAG 244 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 EIGH ++ G GN G LE+ A+ ++ A+ R ++L P+T+ +L + Sbjct: 245 EIGHISINEQGPVGRSGNPGSLESYAAAQVLVATAEARRAAGAPTLLT-DPVTLPALVRH 303 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A D LA+++ VG H+G ++ +NLFNP ++IG L++A + + S + Sbjct: 304 AET-DPLARELWEDVGHHLGVAISTALNLFNPAVVVIGGRLAEAGPVFLNAVRSSALSRT 362 Query: 364 LPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLLIRLLQ 405 + ++ ++ + + GA A++ D + S L L Sbjct: 363 MQINAERTRIDLSTLGGDAGVLGAGAMMLDQLLTSSGLPHLYA 405 >UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D084_HALOH Length = 378 Score = 323 bits (828), Expect = 9e-87, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 173/394 (43%), Gaps = 22/394 (5%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q G++ +K+ N + + + Q GP+SR DL+++ L+P +I+ I E+++ L+ E+ Sbjct: 2 QRGNMKLMKKINRALIIQTLSQQGPLSRADLTKITDLSPTTISSITEELIQEGLIVEVGE 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 E+ GR + L + E ++ LS+ I+ +++ L +L +++ +L K P L Sbjct: 62 GESKG-GRRPILLDINPEDFYILSVNIAVDVMYVYLFNLKFQVINS-VHDLIKKPVSPNL 119 Query: 126 D-RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 D ++ + + + + + I GII+ E G++ + + PL + +++ Sbjct: 120 DSQLKELVQKVVENSNIGKKNVVGMGIGATGIINKEKGLITYSASL-GISDYPLLDKVKR 178 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 P+ +++D + + E FG R + ++I +G G+I D + E Sbjct: 179 EYDFPILLENDTNLAALGEKKFGCGRQLTNFFYIMIGSAIGGGIIIDNEIYRGKFGGAGE 238 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 GH V+ G C CGN GCL + I ++ +S ++ C+ Sbjct: 239 FGHITVEKDGPLCECGNQGCLNAVL-TPYITVRSREEFRKSFQEIIKDDNFDS---CR-- 292 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK-AADILFPVISDSIRQQA 363 ++ + LF+P+ I++G +++ A + + + I++ + Sbjct: 293 ----------YHEFCEYLAMAITNYTKLFDPEAIVLGGEIARIAPERFYIDLEKYIKRMS 342 Query: 364 LPAYSQHISVESTQFSNQG-TMAGAALVKDAMYN 396 L + I V + + GA L D +YN Sbjct: 343 LKGMNSKIPVLPSSIRTNAVVLGGACLCFDNLYN 376 >UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepID=D2PL28_9ACTO Length = 404 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 90/385 (23%), Positives = 170/385 (44%), Gaps = 10/385 (2%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 + ++++N + I + GP+SR +L R L+ AS++ +V E+L+ +V+E E+ Sbjct: 8 VRDMRRSNRSVILTSIYRHGPLSRYELGRETSLSAASVSNLVGELLDEGVVEEAGSVESD 67 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD--R 127 GRP V L V + + + + + L DL+ +V + P L Sbjct: 68 G-GRPRVLLRVAPTFGYVVGAEVGETRVRVELFDLAMNVVATVVSPIETPKPAPELAVRS 126 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 ++ +D+ ER+ + + + G+++ V +PLG L T Sbjct: 127 VLQGLDEVIAGAGVAKERVLGLGVAVAGVVEGPADAVVHAQTL-GWDGVPLGAMLAAGTE 185 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +P+ + + + AE FGA RGA D + ++ VGA ++T G SS E GH Sbjct: 186 IPIQVDNGANTLGQAEMWFGAGRGATDAVVALVGSGVGAALVTGGTSYRGTRSSAGEWGH 245 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 T + G++C CG GCLE +++LE + S ++ + + A G Sbjct: 246 TTIMYGGRQCRCGALGCLEAYVGAEAVLERYREAGGPSAAT----DDEEAEFVALLAAVG 301 Query: 308 -DLLAKDIITGVGAHVGRILAIMVNLFNPQKIL-IGSPLSKAADILFPVISDSIRQQALP 365 +A ++ ++G A +VNL NP++I+ G + P + +++ + AL Sbjct: 302 TSEVAAKVVEDTIGYLGAGFANLVNLVNPERIVLGGWAGLLLGERYLPQLREAVGRHALR 361 Query: 366 AYSQHISVESTQFSNQGTMAGAALV 390 +++E + + GAA + Sbjct: 362 RPYAQVAIELCELGSDAVARGAATL 386 >UniRef50_B2Q2V0 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q2V0_PROST Length = 402 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 153/404 (37%), Positives = 251/404 (62%), Gaps = 4/404 (0%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 ENQ GHIDQIKQ N G VYR+IDQ GP+SRI LS+ +QLAPASITKI RE+++AHLV+E+ Sbjct: 2 ENQTGHIDQIKQLNTGIVYRVIDQYGPISRIALSKQSQLAPASITKITRELIDAHLVKEI 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E G RGRPA+GLV+E+E W +LS+R++ I L+L++++++ +VE+ +K + Sbjct: 62 EFPVLGLRGRPAIGLVIESEGWQFLSIRLACNSISLSLKEINTQTIVEQDYPFDVKGNEQ 121 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + + S I FF + + LER+T+I+I L G+++ +G+++ +P+Y D+ +PLG L Sbjct: 122 FSNTLSSLISHFFATYSRHLERVTAISIVLDGLVEPFSGVIYALPYY-DIDNLPLGHFLT 180 Query: 184 QHTGVPVYIQHDISAWTMAEAL-FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + TG+P YIQ ++A +A+ R A+++I + ID V A +I +G L + + Sbjct: 181 EQTGLPTYIQPYVNALALADYFSLYEKRTAKNIIYLQIDCVVSAAIINNGIALDSHTRRA 240 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 + GH Q G+ CYCG GCLE ++ +IL+ A + SS +T+DS C Sbjct: 241 IHFGHVQTQNTGETCYCGGIGCLEGAIAIPAILKHAVELQHLYPSSSFFNHDITIDSFCL 300 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A D L ++ + + + L ++N+F + ILI SPL++ + + + ++ Q Sbjct: 301 AVEDQDPLCLHVLNDIAQILAKQLGQLINIFGTELILINSPLNRISSVFYSLLHQYCHSQ 360 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 ++P Y + +E ++ + + + ALV+ A+Y+GSLL++LLQG Sbjct: 361 SIPLYRGELRIEQSEVTKKESET--ALVQQALYDGSLLLQLLQG 402 >UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID=D2PPF8_9ACTO Length = 414 Score = 321 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 100/404 (24%), Positives = 168/404 (41%), Gaps = 14/404 (3%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 ++ TN AV + P SR ++ L A++T IV E++ L +E E Sbjct: 19 TADHTDVRATNLAAVLGFLRANAPCSRAAIASGTGLNKATVTSIVGELIAQRLARETEQT 78 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSK--LVVEESQELALKDDLPL 124 + + GRPA LV++ A+ + + + + D + L S Sbjct: 79 Q-NHVGRPATLLVLDGSAYAAIGMEVGVRGLTAIAYDSAGGQLLRWHRSGPGPEASPAKT 137 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + + + + + + + PG+ID + +V +++PL L Sbjct: 138 IAALAALARRAISAVHSSGRDVLGLTVGAPGLIDHDGSVVLAAGL--GWRDVPLRSDLIA 195 Query: 185 HTG---VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 G PV + +D + +AE +G G D+IQ+ + VGAGVI DG L Sbjct: 196 ALGRPAFPVMVDNDANLGALAEHRYGDHAGTADLIQLSGETGVGAGVICDGRPLRGHHGY 255 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 + EIGH ++ P G C CG GCLE +A + +IL + L + L Sbjct: 256 VGEIGHLRIQPDGPVCGCGRRGCLEAVAGMPAILARLEPADAPETDPQLR-----TEQLV 310 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + A GD + VG +GR ++++V+L +P+ +++G + L P I + Sbjct: 311 RRAEEGDTATLKALAEVGGLLGRGISVLVDLLDPELVVLGGSYAGLGRWLVPAIEQELAD 370 Query: 362 QALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLLIRLL 404 AL S V + F + T GA A D + +G L I L Sbjct: 371 GALVTVSGRCRVVVSTFGHDATSIGAVARSLDRLDSGRLPIPTL 414 >UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PW32_CATAD Length = 396 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 86/394 (21%), Positives = 174/394 (44%), Gaps = 6/394 (1%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 +P +++ N V R ++R D++ ++ A+ I+ E+ A L+ E + Sbjct: 2 RPRLSGDLRRANRVEVMRSFYGGRTLTRGDVAAQLGVSVATAGTIIGELTAAGLLAETQS 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-- 123 +G GRPA L + A + + + ++ + + D + V +A DD P Sbjct: 62 PRSGG-GRPASQLTMRAGAPYLVGVDLAETYVIAEIFDQAMTRVGHFQTPVAPTDDDPDS 120 Query: 124 LLDRIISHIDQFFIRH-QKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 ++ ++ + + + ++LPG +D E G+ P + +P Sbjct: 121 VVGHVVDSVQGVIAALDGVSAADVAGVGVSLPGQVDREGGVSVHAPNW-GWHGVPFTSLF 179 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + +PV + + + A T+AE +FG + D + V + VG GV+ +G LL +++ Sbjct: 180 HKRCDLPVLLDNPLKAITLAEMMFGEAGDHDDAVVVNLGTGVGLGVVAEGRLLRGRTNTA 239 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 E GHT + G C+CG+ GC+E ++L+L S + Q TV L + Sbjct: 240 GEWGHTILVADGLPCHCGSRGCVEAYVGAAALLDLLTDVDPDSPLLVPGDQAATVARLAE 299 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA-ADILFPVISDSIRQ 361 A D +A + +G LA VN+ NP+ +++G +S A + L + ++Q Sbjct: 300 AVASADPVAVATLERFARPLGMALANAVNMLNPELLVVGGWVSAAFGEPLLAAVEPVVKQ 359 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 +L +++ +++ ++ G A++ + Sbjct: 360 FSLAVPYDAVTLAASRIADNPVSLGMAVLAFETF 393 >UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=Micrococcineae RepID=D1BAZ9_SANKS Length = 420 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 179/385 (46%), Gaps = 14/385 (3%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G +++ N + I + G +++++L L+PA+I+ IV+E+L +V + + Sbjct: 5 GSQSSLREANRALIVDTIKKFGGLTQVELVAATGLSPATISTIVKELLGGGIV---DTQS 61 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-LD 126 GR A + + ++ + +AL D +V E++ L + LD Sbjct: 62 TTRSGRRAQMVTLARRVGLVAGVQFGHRHLKVALGDFGRTVVAEQTMPLPVDHRSDTGLD 121 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 R + + R ++ L +I +T+P +D G + LG+ L + Sbjct: 122 RAALLVVELLERVGAPIDELLTIGLTVPAPVDVSTGEISVHGIMRGWDGQQLGQVLSERL 181 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 PV + +D +A +AE GA RG +DV+ V + ++ GAG++ GHL + + EIG Sbjct: 182 ARPVVVDNDANAAALAEHELGAGRGYQDVVFVRMSYSTGAGIMLGGHLHRGFAGTAGEIG 241 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 H QVDP G C CGN GCL+T+ S ++L+L + LT+ L AL Sbjct: 242 HVQVDPRGDICRCGNRGCLDTVVSSTALLDLLRGSHG----------DLTLRDLVSRALA 291 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 GDL + ++ G +G ++A + NPQ +++G L+ A +++ + ++ + P Sbjct: 292 GDLGCRRVLADAGERIGGVVATLAGTLNPQLVVVGGELAAAGEVIVEPLRQAVLRHVAPN 351 Query: 367 YSQHISVESTQFSNQGTMAGAALVK 391 + V + Q + GA L+ Sbjct: 352 TVAPLEVVPGELGEQAEVTGALLLA 376 >UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWK5_9BACT Length = 410 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 90/394 (22%), Positives = 182/394 (46%), Gaps = 13/394 (3%) Query: 9 HIDQIKQTN---AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 ++ I N + + G + +L++ ++ +ITK+V+E+++ ++V +L Sbjct: 15 NLKGISHKNNLFKRNIIAHMAVNGECTLSELTKELHISVPTITKLVQELVQENIVSDLGK 74 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEES-QELALKDDLPL 124 E RP V + + A ++ + I R + + DL + +V EE + L+D Sbjct: 75 VETPGGRRPNV-FGLASSAIYFAGVNIGRDNMSFLITDLHNNIVKEELLTDFELQDRPQC 133 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L++I S+I F + ++ + +++ G ++ G +R Y E L + +EQ Sbjct: 134 LEKICSNIAHFIDTCGVERAKILGVGVSVSGRVNPTTGRSYR---YFTSSEQSLRDMIEQ 190 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 G+ V +++D A AE S+ DV+ + + + G++ +G L + S E Sbjct: 191 RIGIRVLLENDSQARCYAEYTNSKSKDEMDVLYLHLGRGLAIGIVMNGKLYYGKSGFAGE 250 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-----QPLTVDS 299 GH C CG GCLET S +I + ++Q ++++L + + VD Sbjct: 251 FGHIPFFDNEIICSCGKKGCLETEVSGIAIEQKFGRLISQGVNTILREKYNKHEAIHVDE 310 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + AA D L+ ++I VG G+ +A ++N FNP+ +++G L++A D L + + Sbjct: 311 IIDAAKHDDNLSIELIEEVGEKAGKAVAFLINTFNPETVIVGGELAEAGDYLMLPLKSAT 370 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 + +L + ++ + GAA++ Sbjct: 371 NKYSLNLVYKDTKFRLSKMGKTASAWGAAMLIRN 404 >UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG91_9CLOT Length = 403 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 94/404 (23%), Positives = 190/404 (47%), Gaps = 16/404 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + + + I+ N + L+ + G +R L+ L+QL A++T IV + ++ LV Sbjct: 1 MNRSIRGFNQENIQDMNRTLLLNLLRKEGICARAHLANLSQLKQATVTNIVSDFIDWGLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 +E+ GN+GR ++G+ + + + L++R++R + + +LS +L+ ++ EL + Sbjct: 61 KEVGFL-VGNKGRRSIGISINNDDFGVLAIRLARKNYTVGIFNLSGRLLDKKRVELDVNQ 119 Query: 121 DLPL-LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 + + II + + + ++ +I + +PG + G + M E+P+ Sbjct: 120 PPRVTFEAIIHEAGELIRSSESR--KIIAIGMAIPGPYSEKRGRIELMTGVLGWNEIPIQ 177 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARD--VIQVVIDHNVGAGVITDGHLLHA 237 E L+ +PV+++ D +A +A+ ++ V+ + + VGAG+I +G LL Sbjct: 178 EKLQDIFKIPVFLEQDANAGALAQYWH-NDEDYKNGVVVYIAVGQGVGAGIINNGELLKG 236 Query: 238 GSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTV 297 E+GHT + G RC CGN+GCLE S + + L + Sbjct: 237 CIGVAGEVGHTSICYNGPRCACGNYGCLENYCSSIAFTKEVNRVLRPEI-------EYNF 289 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK-AADILFPVIS 356 + Q GD + DI + + ++N FNP I+IG +S ++ + Sbjct: 290 RQVSQLLRDGDQVVTDIFLDACDKLSVGIVNIINSFNPSVIVIGDEMSHILPSVMLERVK 349 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK-DAMYNGSL 399 +++++ LP ++++ + SN GAA+V + ++N L Sbjct: 350 SNVKERVLPEIYANMNITMSVVSNDSMAHGAAIVAINDIFNHPL 393 >UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F6K2_THELT Length = 403 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 167/379 (44%), Gaps = 6/379 (1%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 D +K N V R I Q+G VSR +S+ L+ ASIT I +LEA+L++E ++ Sbjct: 6 DILKDHNEKIVLRTIRQMGEVSRTTISKKTGLSIASITNITSRLLEANLIKENRYGKSKG 65 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR V L + + + +++ ++ + DL V+E+ L ++++I Sbjct: 66 -GRRPVLLGINEKHSWAIGVKVGYLYLYFVVTDLLGTPVLEQKIPLNTASYNAVVEKIAD 124 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 ++ + + I + + G +D+E+GIV + + +P+G LE+ PV Sbjct: 125 FVNTIVKIPEYVDRKFLGIGVAVSGSVDSEHGIVKSS-YILEWGNVPIGPVLEERIKAPV 183 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 + +D+ ++ +A G ++ ++ I + + VG +I G L EIGH V Sbjct: 184 LVYNDVDSFAVAHYTIGRAKKYKNCIFITLGSGVGGAMILGGKLYTG-RGGAGEIGHMTV 242 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSM---SSMLHGQPLTVDSLCQAALRG 307 GK+C CG++GCLE S +++++ + + N S L + + + +A Sbjct: 243 ICDGKKCSCGSYGCLEAEISFNALVDRIKKKTNIESLKNRSCLTTEDEAIHYIHKALQID 302 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + + +G + M+N+F P +LIG + D+ R+ + Sbjct: 303 REAVIEAFDEISVLLGVAIKNMINIFAPDYVLIGGEALEFRDLFLKKAILIARENSFGDL 362 Query: 368 SQHISVESTQFSNQGTMAG 386 + ++ + G Sbjct: 363 GDDVVIDIDDMGEVAWVQG 381 >UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 Length = 320 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 157/315 (49%), Gaps = 9/315 (2%) Query: 85 WHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFFIRHQKKL 143 + + + +I + L D K++ + Q + K ++++I S ID + K+ Sbjct: 2 RKAVGVDLGGTKINVLLVDDQGKVLGRDKQPTESEKGKDHVINKIKSMIDNVLNQAGLKI 61 Query: 144 ERLTSIAITLPGIIDTENGIVHRMPFYED-VK-EMPLGEALEQHTGVPVYIQHDISAWTM 201 + I I PG++D + P D K E+ LG+ LE+ VPVY+++D++ Sbjct: 62 TEIEGIGIGFPGLMDRDKKTTLYAPNLGDEWKKEVLLGKELEETFNVPVYLENDVNLIAW 121 Query: 202 AEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGN 261 AE L GA RG + +I V + +G+G++ +G L E GHT V P G C CGN Sbjct: 122 AEWLVGAGRGTKTMICVALGTGIGSGIVLNGKLWIGAHGMAGEFGHTTVLPDGPVCGCGN 181 Query: 262 HGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLLAKDII 315 GC+E IAS I + A+ L Q +S++ + +TV + QAA RGD LA DI Sbjct: 182 RGCIEAIASGTGIEKYAKSILPQYPNSLIWELCNGNLDEVTVKIIYQAAERGDKLAVDIF 241 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 G ++G LA V++ +P+KI+IG ++ + + + + ++ LP++ ++ Sbjct: 242 NYAGYYLGIALANYVHIIDPEKIVIGGGVANVREYIGKPMKEEFYKRVLPSFRDKVTFSW 301 Query: 376 TQFSNQGTMAGAALV 390 + GAAL+ Sbjct: 302 AELGEDAGGIGAALL 316 >UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus sp. SG-1 RepID=A6CIT4_9BACI Length = 372 Score = 320 bits (821), Expect = 6e-86, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 167/387 (43%), Gaps = 32/387 (8%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G + IKQ N + + PVSR LSR L+ ++++ IV E+++ L+ E Sbjct: 2 KKGDYELIKQINRRLILSAVRNQQPVSRAALSRELGLSKSTVSGIVDELIKKKLIIEEGQ 61 Query: 66 KEAGN-RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 E+ GR + L + + + I +I L + DL +++ +E Sbjct: 62 GESTKEGGRKGIQLFFNPKCSFGIGVDIGGTKILLVVTDLDGEIIFKEEHPTEKNP---- 117 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++I+ I F R L+ ++++ I +P II+T+ GIV P + ++ + L++ Sbjct: 118 -EKIVKLIYNFIDRSNTPLDLISAMGIGVPSIINTKEGIVVDAPALK-WRDYRFLDFLKE 175 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 P ++ +D++ E FGA R D++ + I VG+ V +G ++ + S E Sbjct: 176 KFEFPCFLNNDVNCAMYGELRFGAGRDCSDLLFIAIGTGVGSAVYANGQIVEGATFSAGE 235 Query: 245 IGHTQ----VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 IG+ V+ G + G G E S ++ + +T L Sbjct: 236 IGYLVDKSDVE-NGYKRVPGEFGAFENKTSGTALTKY----------------GMTPKEL 278 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 +GD A++II ++ +A L N K++IG +S++ + I + Sbjct: 279 FDQYYQGDREAQEIIKDFTLNLAIAIANASCLLNSSKVIIGGGVSRSMVGIIQHIQR-LA 337 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGA 387 Q P + + +ES+QF GA Sbjct: 338 NQWTPFF---VEIESSQFQTDAGAIGA 361 >UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepID=Q1GMG9_SILST Length = 435 Score = 320 bits (820), Expect = 7e-86, Method: Composition-based stats. Identities = 91/380 (23%), Positives = 167/380 (43%), Gaps = 12/380 (3%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL--EIKEAGNR 71 +++ + +I ++RID+++ ++PA++T I E+L A L++E+ E+ R Sbjct: 45 RESGRQQILDVIRAQESIARIDIAQATGMSPATVTAITAELLAAGLIEEIAPELAPGARR 104 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL--ALKDDLPLLDRII 129 GRP V L + A L++S I + D + + L L +I Sbjct: 105 GRPRVALRLRGAARLIAGLKVSHHVISTVITDFVGQELASHEMPLVQGTMPVPELCAQIR 164 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 +D + +E L+ + + + G++D + G ++ E+ + + A+ P Sbjct: 165 RALDLTCEKGGFSIEDLSGVGLGMAGMMDADRGFIYWSSSLEE-RNVAFTAAISAELPCP 223 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V++ +D + AE LFG R + I + I+H VG G++ D + E+GHT+ Sbjct: 224 VFLDNDANLVAKAEHLFGEGRTCDNFIVITIEHGVGMGIVIDQQIYRGTRGCGAELGHTK 283 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 V G C CG GCLE ++L A + + T+ SL Q+A GD+ Sbjct: 284 VHLEGALCQCGQRGCLEAYVGDYALLREANISSGSERHT-------TIASLFQSAENGDV 336 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 +AK I+ LA +VN+F+P KI++ + + + +RQ + + Sbjct: 337 VAKSILDRARRMFAMGLANVVNIFDPSKIILAGARLSFDYLYSDKLIEEMRQWVVQVDAP 396 Query: 370 HISVESTQFSNQGTMAGAAL 389 V + + GAA Sbjct: 397 LPEVMVHDWGDLMWAKGAAA 416 >UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KTE3_CLOPH Length = 381 Score = 320 bits (820), Expect = 8e-86, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 163/390 (41%), Gaps = 24/390 (6%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G + I+ N+ V I Q P+SR +S+ L A+I+ IV + + LV E+ E Sbjct: 4 GSKELIRDINSKLVLETIIQNEPISRAAISKKLGLTKATISAIVSDFINDKLVVEIGS-E 62 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 GR + L +A + + + I I + DL + +++ + L+ Sbjct: 63 DTGLGRKPILLSFHKKAGYAICVDIEVSRISCMISDLKGEQ--RSVKQIKTPSESNLVPV 120 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 +I I ++K L IAI + G++ V P+Y ++ + L E L + G Sbjct: 121 LIDLIQSMESEYEKTPYGLIGIAIGIHGVVHQNE--VLFTPYY-NLNGINLSEQLGSYFG 177 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 VPV+++++ + + E + + + I VG G+I + L + E GH Sbjct: 178 VPVFLENEANLSALGEKAY-LPETYTSLANLSIHSGVGLGIILNKQLYTGYHGNAGEFGH 236 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 T V G+ C CGN GCLE AS ++L+ + ++D L A + Sbjct: 237 TIVVMNGRTCPCGNQGCLEQYASERALLKEYS-------------EDASLDDLLLAYEKK 283 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + A ++ ++ + + N +P+ I+I S + A L +I+ + + + Sbjct: 284 EPKAMGVMEHFVNYMAVCVNNLQNTISPEIIIINSAFTNAYPELAEMIAKKVNNKLV--- 340 Query: 368 SQHISVESTQFSNQGTMAGAALVKDAMYNG 397 I + ++ + + G V + G Sbjct: 341 -DKIPLIASNLKDHSILLGGITVLVKNFLG 369 >UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLA5_9SPHI Length = 410 Score = 320 bits (820), Expect = 9e-86, Method: Composition-based stats. Identities = 101/392 (25%), Positives = 184/392 (46%), Gaps = 8/392 (2%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 +D K V + G + L+R+ + S+T +V E+++ V + G Sbjct: 18 VDYKKNQKQRKVLAHLYSEGTCTLAHLTRMLHSSVPSVTSLVEELIDNQWVTPIGTA-TG 76 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRII 129 + GR V + T++ + L +S + + ++ K++ +L L D+ L ++ Sbjct: 77 SNGRRPVLFGLNTKSHYVAVLDVSTHDTKILFMNVQRKVIFRGDYDLRLNDNPSFLTSLV 136 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 + + ++ L ++ I++PG++D G+ L + L P Sbjct: 137 HYFHNALADSEISIDDLIAVGISMPGLVDARRGLNLTYKNLHQ-TGESLPQWLSAELNKP 195 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 VY+ +D A + E+ FG ++G + V+ + ID VG G+I +G + S E+GH Q Sbjct: 196 VYLINDTKATVLGESRFGGAQGKKQVLAINIDWGVGLGIIVNGEVFQGASGFAGELGHIQ 255 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAA 304 VDP G+ C+CG GCL TI S ++++ AQ + S L H + +D + AA Sbjct: 256 VDPDGELCFCGKIGCLSTITSASALVKRAQTDILAGQVSKLATFRDHVDQIDIDEVINAA 315 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 GD A DI+ G +G+ LAI ++LFNP+ I++ L KAA + I +I + L Sbjct: 316 NSGDSYAIDILHETGYQLGKGLAIAISLFNPEIIVVDGVLFKAAAFILNTIEQAISKYCL 375 Query: 365 PAYSQHISVESTQFSNQGTMAGA-ALVKDAMY 395 + +++E TQ + G A + + ++ Sbjct: 376 SDFRNDMTIEVTQLNGTAKWLGTHAYMMEDIF 407 >UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3141A Length = 397 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 93/380 (24%), Positives = 172/380 (45%), Gaps = 12/380 (3%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 +QTN V R + + +R +L+ L+ +++ + E+++A +V + E + GR Sbjct: 12 RQTNRFKVLRALYEHPGSTRTELAADTGLSRPTVSTVTDELVQAGIVAQHEDTQPRT-GR 70 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIISHI 132 P V L + + A + + L + + +A+ DLS +++ E + + D + Sbjct: 71 PPVLLSLASGAAYAVGLDMGHAHVQVAVSDLSGQILGHERSAADVDHAPVESFDLAGELV 130 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 + L+R+ + + L +D G V + +E +PV + Sbjct: 131 HGALGQAGVPLDRVIGVGMALAAPVDRATGTVFADGILPSWGRVQPAIEMEARLDLPVMV 190 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +D + + E +FGA R +++ V + +G G++ G S E+GH +V P Sbjct: 191 HNDANLGALGEHVFGAGRDVAEMMYVRLSAGLGLGLVLGGRPYGGTSGVAGELGHVRVAP 250 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CGN GCLET+AS ++ L +P++V+ L + GD A+ Sbjct: 251 EGLICRCGNRGCLETVASSTAVARLLAHS---------RDEPVSVERLLELVADGDRGAR 301 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 + G VG LA +VNLFNP+ I++G L+ D L + +I + A+ + ++ Sbjct: 302 RAVAEAGKTVGEALATVVNLFNPELIIVGGDLAAGGDALLAPLRTAIDEYAVAPAAGAVT 361 Query: 373 VESTQFSNQGTMAGA-ALVK 391 V ++ + GA ALV Sbjct: 362 VSLGALGDKAEVLGAVALVL 381 >UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LF86_9FIRM Length = 381 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 159/392 (40%), Gaps = 22/392 (5%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 G+ + I+ N +V R I G +SR ++ L A+++ IV+ +L+ ++ E E Sbjct: 3 TGNQELIRDINTQSVLRTIITHGAISRASIASELGLTKATVSAIVQVLLDRGIIFEAESS 62 Query: 67 EA---GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 + G +GR + L + + + +++ ++ I L +L K +L Sbjct: 63 DTAPEGRKGRKPIFLQLNKDCGYVVAIDLATENITLMTANLLGGNCRLTQFPTPEKTEL- 121 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 LL + ID+ K L IA+ + G++ + +P Y ++ L Sbjct: 122 LLPLLKERIDRAINALPKTRYGLLGIALGIHGVVHHNK--IIFLP-YSSFGDIDFVSRLG 178 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 GVPV ++++ + + E +++ + + +GAG+I L+ + Sbjct: 179 DIYGVPVVMENEANLSALGEWAH--CHDTNEMLYISVHSGIGAGIIMKNQLVKGKNGYAG 236 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E GHT ++ G+ C CGNHGCLE AS ++ S G P+ + + Sbjct: 237 EFGHTIIEVDGRPCPCGNHGCLEQYASERALFAEL---------SAQKGYPVNAEVYGRL 287 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 +GD A + ++ + ++N FNP I++ S L+ + D I Q Sbjct: 288 YRQGDPAAVRAMQQFIKYMSVGINNLLNTFNPDIIVLNSSLTMC----HAGLCDDIAAQL 343 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 + + + + + G + + Sbjct: 344 HNNMKDYCRLVPSTLQDTAVLLGGVYLIRERF 375 >UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYI5_HALOH Length = 322 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 158/313 (50%), Gaps = 8/313 (2%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIISHIDQFFIRHQKKLE 144 +Y+ + + +I AL D K+V ++ + ++ I+S ID E Sbjct: 4 YYVGVDLGGTKILTALADARGKIVAKKKLPTEARKGEEKVIQNIVSSIDAVLQEKGLSRE 63 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 + ++ + PG ++T+ GI++ P + + + + LE+ TG+PV +++D +A + E Sbjct: 64 DVITLGVGSPGPLNTQEGIIYLAPNL-GWRNVHIKDILEEETGIPVILENDANAAALGEK 122 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 FGA + ++I + + +G G+I + + H + E+GH ++P G C CGN GC Sbjct: 123 WFGAGQDVDNLIYITVSTGIGGGIIINKKIFHGINDGAGEVGHMVIEPGGPVCGCGNRGC 182 Query: 265 LETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLLAKDIITGV 318 E +AS +I ++ + + ++ +++L + + + +AA +GD +A+ I Sbjct: 183 FEAVASGTAINKMGREAVKENKATLLMELSGGDPEKIDGSLIARAARQGDEVARKIWDKA 242 Query: 319 GAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQF 378 G ++G LA ++N+FNP+ I++G + A D++ + S++ AL + + + + Sbjct: 243 GYYLGIGLANLLNIFNPEMIILGGGVMNAGDLIMEPMKKSLKDHALESAFNSVEIRQAEL 302 Query: 379 SNQGTMAGAALVK 391 N + GA V Sbjct: 303 GNDTGVIGAVAVA 315 >UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDS7_9FIRM Length = 326 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 81/306 (26%), Positives = 152/306 (49%), Gaps = 6/306 (1%) Query: 87 YLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIISHIDQFFIRHQKKLER 145 Y ++ + +I+ L D ++ E ++ ++D+++S +DQ + K E+ Sbjct: 6 YAAIDLGGTKIYSVLADSKGDILAHTRLETRAREGSETVMDQMVSSVDQLLEKSGGKKEQ 65 Query: 146 LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEAL 205 L I + + G D E ++ P ++ + L+ G+PV ++D +A + E+ Sbjct: 66 LAKIGVCIAGFYDWEKRLLIHSPNMAGWSDVDVESRLQDKLGIPVIAENDANAAALGESR 125 Query: 206 FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCL 265 GA +G+ D++ + + +GAG+ITDG + E GH V P G C CG GCL Sbjct: 126 RGAGQGSGDMVFITVSTGIGAGLITDGKIYRGSRGFAGEAGHMVVKPDGPLCGCGRRGCL 185 Query: 266 ETIASVDSILELAQLRLNQSMSSMLHG-----QPLTVDSLCQAALRGDLLAKDIITGVGA 320 ET+AS +I +A ++ ++L +T + AA + D LA++++ G Sbjct: 186 ETVASGTAIARIANEQMQNGRKTILSEITAQNSKVTAPDVFAAAKKKDPLAQEVLQGAIH 245 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSN 380 ++G L +VNL NPQ I+IG +++A D LF + I + A+P + +++ + Sbjct: 246 YLGIGLVNLVNLLNPQVIVIGGGVAEAGDDLFVPLRQIIAEHAVPPAAASVTLRKAELGV 305 Query: 381 QGTMAG 386 + +AG Sbjct: 306 EAGVAG 311 >UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus faecium 1,141,733 RepID=C9BHD6_ENTFC Length = 386 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 162/390 (41%), Gaps = 19/390 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN-R 71 I++ N + + I + V R +L+ L AS++ I +++L+ L+ E + +A Sbjct: 8 IRELNQATLLKTIIEKKEVFRAELAAATGLNKASVSDITKKLLDDQLIVETRVGDASTAG 67 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR + L ++ LS I + L + ++ S+ D + D I Sbjct: 68 GRKPIMLTFNPQSATALSFDIGYNYLEGMLSYIDGTVLSSISKRRISIDATNVFDHIQES 127 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 I Q + + + I + G++ ++ P+Y D+ ++ L + L H P+Y Sbjct: 128 IHQLIRDLPETPHGIVGMTIGIHGVVFEDH--PIFTPYY-DLHKIDLQKELADHYDFPIY 184 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 + ++ + + E F + ++++ + I +G G++ G L E+GH+ + Sbjct: 185 LHNEANLAALGEYTFSS--HYQNLVSISIHSGIGCGIVASGKLQVGKHGKAGELGHSILY 242 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 P G+ C CGN GCLE AS ++ E + D L +GD A Sbjct: 243 PDGRPCPCGNSGCLEQYASSKAVYEEFARLKGL--------DYVNSDILTDYVKKGDTDA 294 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 ++ A + + ++ +++P I+I S L + P + + I +++ I Sbjct: 295 TALLKKNAALLSIGINNIIMMYDPDVIVINSKLYEKN----PQMIEQIHANLTSQFTKDI 350 Query: 372 SVESTQFSNQGTMAGA-ALVKDAMYNGSLL 400 V +T+ + GA A+ N L Sbjct: 351 LVRNTRLKGNAILYGALAVTAQHFLNIRKL 380 >UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35AB4 Length = 401 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 71/388 (18%), Positives = 160/388 (41%), Gaps = 16/388 (4%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA--GNR 71 K +N + I + P++R D++ ++ PA++T V ++ V+EL + Sbjct: 8 KASNRSRILECIYRNAPIARTDIAEETEITPATVTMNVTTLISEGFVRELGEVSTDEASS 67 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR V + + + + + L ++ + + + DL ++ + ++ + + D II Sbjct: 68 GRKRVLIDIIPDRAYSIGLEFTQKALVICITDLKGRIRFQRTEPFNEELAGRITDAIIGG 127 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 + + + I +PG ++ + + + + +EQ +P+ Sbjct: 128 VKDLVAESGISWDEIVGIGAAVPGHMNGSASSLIT--NRKTWQNFD-PKRIEQELPLPIV 184 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 +++ + E LF + + + DG + + EIGHT V Sbjct: 185 CENNARCMALGEYLFSPQESPDSFAFFHVGMGMFCASVVDGEMFLGENYVAGEIGHTIVS 244 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALR 306 G+RC CG +GCL+T AS + ++ A+L + +++L +T++++ A Sbjct: 245 EGGRRCECGKYGCLQTYASENHLIRNARLLYRNTPNTILRSLVSDDSQITIETITTAYSM 304 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL-- 364 GD + I ++G ++ + + NP KI + L D + + D I +Q + Sbjct: 305 GDPVIGMYIAEALKYLGITISNIAIITNPGKIFLHGQLFDNQD-IQNELMDYIERQLIFV 363 Query: 365 -PAYSQHISVESTQFSNQGTMAGAALVK 391 Y+ ++ + + GA+ + Sbjct: 364 DRTYAGNVEILP--YGAADGAVGASALA 389 >UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9KEZ9_BACHD Length = 388 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 158/378 (41%), Gaps = 16/378 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 IK+ N A+ I + +SR DLS++ L +++ V +LE HL+ E + E+ G Sbjct: 9 IKKMNRRAILEKIIEKQEISRSDLSKITNLNKVTVSSQVASLLEEHLIIEKQYAESSG-G 67 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R + L + A L + + + L +L ++ +E +LA D +++ +IS I Sbjct: 68 RKPILLTLNENAAFTLGIDLDIKTLTFMLCNLKGAVIKKEQWKLANVDFDDVVNEMISLI 127 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 F + I I + GI+D + + P + + + + +EQ +PV + Sbjct: 128 QSFLKDIPASKYGVVGIGIGIHGIVDNDE-TIAFTPGHH-WSNVNVKQPIEQAVNIPVVV 185 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 ++ + +AE + + A +++ + VG G+I + E+GH + P Sbjct: 186 ENSTNLCALAENVV-SDHEADNLLCISSFSGVGMGLIVHNAIYKGFHGYAGEVGHMIIVP 244 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 GK C CGN GC E AS ++ Q +S + + D + GD Sbjct: 245 EGKPCRCGNKGCWELYASEKALY--------QEISESTKREHVDRDVVLALIEAGDEETL 296 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 + + L ++N +NP+ I+I S L P I I+ S + + Sbjct: 297 KKLDQFIYYFSLGLNNIINSYNPETIVISSGLMPH----LPNIEHKIQSHLHSKISHYKT 352 Query: 373 VESTQFSNQGTMAGAALV 390 ++ + + GA + Sbjct: 353 LKISNLGKEACALGACFI 370 >UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJD3_BREBN Length = 392 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 85/405 (20%), Positives = 173/405 (42%), Gaps = 17/405 (4%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + G+ +K+ N V + + G +SR D+S+ QL+ ++ +V EM++ L+ Sbjct: 1 MQVPKKTGNSKLVKKLNKEEVLQQVVLHGQISRADISKQTQLSRPCVSALVDEMIQEGLL 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LK 119 QE+ + ++ GR + L +A+ + +A+ D+ + + + LA Sbjct: 61 QEVGMGDSKG-GRKPILLEYNYQAYAIAGAIFEGSTLDMAIADMKGEFLARYRKRLAQPA 119 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 + +++ + + +D+ ERL + + L G+ +G V P P+ Sbjct: 120 NGETVIEDLAAGLDRLLRESGIPRERLLGMGVGLQGVTQRGSGTVSFSPS-TGWMGSPIQ 178 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 + +E G+PV I +D++ T+ E + GA G +V+ + + +GAG+I DG Sbjct: 179 QTIEARLGLPVIIDNDVNMMTLGEYVRGAGVGHTNVVYMYVGTGIGAGIILDGQFYRGSR 238 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 + EIG + P R G G ET S+ I E A+ S L ++ Sbjct: 239 EAAGEIGFMMIGPVHNR-PNGASGVFETHYSIPGIQEQAK-----GFLSDLQEGSSVIEE 292 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L + A + A+ ++ V H +A ++++ NP+ +++ + I + + Sbjct: 293 LIRHAKH-NPEAEKLLADVYRHWAYGMANIISILNPEILILSGEMVHVDGEGVKQIHEWL 351 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLL 404 R+ + ++E + + GA ++ RLL Sbjct: 352 REWV----PEVPNLEKASLGERAGLIGA---VHSVLEAFPFTRLL 389 >UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCW6_SANKS Length = 429 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 162/392 (41%), Gaps = 14/392 (3%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 + + + I G VSR+ L+ L A+++ +VR +++ LV E E+ G+ Sbjct: 6 RSASTSVIVDAIRASGTVSRVGLTVTTGLTGATVSTVVRRLIDDGLVVETGRAESTG-GK 64 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHI 132 P V L ++ A + + + + I + DL+ V + + +L + + Sbjct: 65 PRVLLELDPTARYAVGVHLDHASITCTVTDLAGTSVALSTHPGPGTRSPAEVLVETAAEV 124 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 D+ R+ I PG + ++ G+ P + P+ L + TG+PV + Sbjct: 125 DRLVDEAGVDRSRVLGIGFVAPGPLTSDGGMHRTPPEMRAWTDYPITSELGRLTGLPVVL 184 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 ++D +A + E G + + + +GAG++ DG S + EIGHT +D Sbjct: 185 ENDATASAIGEHWAGGTGTENSFAVLYMGTGLGAGLVLDGVAYRGSSGNAGEIGHTTLDL 244 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQ----LRLNQSMSSMLHGQPLTVDSLCQA----- 303 G C+CG GC+E +A +++ A+ L +S+ G + Sbjct: 245 DGPVCWCGTRGCVEVLAGPAAVVAEARRSPDLAAAAGLSTGTSGSEPQPSVVSDLAAVAR 304 Query: 304 -ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGS-PLSKAADILFPVISDSIRQ 361 A G A+D++ +V VNL + + +++ L+ A DI P + + Sbjct: 305 AAAAGHPGARDVLERSARYVAAAALTAVNLLDVRMLVLTGASLAAAGDIYLPAVRGVLAS 364 Query: 362 QALPAYSQHISVESTQFSNQG-TMAGAALVKD 392 + + V ++ + + GAALV Sbjct: 365 SLFARGAHPVDVRLSRTAATAPALGGAALVLQ 396 >UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bifidobacterium RepID=C6A8T4_BIFLB Length = 401 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 163/381 (42%), Gaps = 7/381 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + + N + + G SR +++ L PA+++KI +L + + Sbjct: 1 MNSRTTTEQQTLSEYNRARTLQYLHHHGIASRAQIAKALHLTPAALSKISNHLLASGAIV 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E E G R ++GL V A+ L ++ +R I + L DL+ K Sbjct: 61 ETGALE-GKGNRRSIGLAVNARAFQVLGVKFARSLIEIGLFDLAGKPSFIRELPTVENTT 119 Query: 122 LP-LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 +P ++ + + I + H + +I + +PG + G + +++ Sbjct: 120 IPQAIESLHAEIRRLLAEHP----HILAIGMAVPGPYLRDRGHTAVVSSMGQWRQVNFRA 175 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 E VPV I+ D A +A+ LF + ++ ++ +G GVI G +++ Sbjct: 176 EFEHAFDVPVIIEQDARAGALAQYLFDPNPANENLAYYLLGEGIGLGVIDHGTVINGSLG 235 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGH +D GK C CGN GCLE S +I E + S L + + L Sbjct: 236 AATEIGHVSIDVNGKACDCGNVGCLERYCSAVAIHEAMLGNGMLATDSRLTHREACAE-L 294 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 A GD A++++ +G VG + N FNP +I+IG +++A + L + + + Sbjct: 295 FARAQSGDGQARELVERIGTFVGYGCVTICNAFNPSRIVIGDIVAQAGEPLLQRVREVVG 354 Query: 361 QQALPAYSQHISVESTQFSNQ 381 ++ +P +Q +E + Sbjct: 355 ERVIPEITQSTQIELSALPTD 375 >UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q6P6_CATAD Length = 429 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 97/396 (24%), Positives = 169/396 (42%), Gaps = 32/396 (8%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE---------- 62 +++ V +++ SR +L RL L+ A+++ +V +++ A LV E Sbjct: 18 LREEGRLRVLQVLLASTTTSRPELVRLTGLSRATVSVLVADLISAGLVVEENGANGSGGS 77 Query: 63 -----------LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVE 111 E+ + GRPA+ L + + + I + +AL DL V E Sbjct: 78 SGSSGSGGSSGTPEAESRSMGRPALPLALNRSVAYAIGADIGHAHVRVALCDLHGTPVWE 137 Query: 112 ESQELALKD-DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY 170 S+ + LD + + + ER+ + + + +D + G + Sbjct: 138 TSRAKEVDRAPHETLDLAADLVRRALTENGVSGERVLGLGVGIAAPVDAD-GALSAEGIM 196 Query: 171 EDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVIT 230 + G LE+ TG+ + +D +A +AE ++GA R D++ + + +GAGVI Sbjct: 197 PGWTGIRPGPELERRTGLATELTNDANAGALAEHMYGAGRDIEDMVYIRLSAGIGAGVIA 256 Query: 231 DGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML 290 G L EIGH G C CGN GCLETIAS ++ L Q Sbjct: 257 AGRLQRGAGGLAGEIGHLPAVRDGLVCRCGNRGCLETIASPVAVARLLQDSW-------- 308 Query: 291 HGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADI 350 G+P+ L G ++ G VGR LA +V L NP+ I++G L+ + Sbjct: 309 -GEPVAPGDLPALLAAGTPGTARVVEDTGEAVGRALAGLVTLLNPRLIVVGGDLAAIGEP 367 Query: 351 LFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAG 386 LF + I + ALP+ ++ ++V + + + + G Sbjct: 368 LFEPLRRGIARYALPSAARQVAVVAGRLGSSAEVRG 403 >UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C6Y2I2_PEDHD Length = 405 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 170/380 (44%), Gaps = 8/380 (2%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 + + + G + DL R L+ +T V ++ +V++ + RP + Sbjct: 23 KKIIISYLAEKGHATIADLCREMNLSIPKVTTSVTMLITEGVVKDFGKVGSTGGRRPNI- 81 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLV-VEESQELALKDDLPLLDRIISHIDQFF 136 + ++ +L + + I + L DL ++ + + L ++ L + I +F Sbjct: 82 YGLVPDSGFFLGVDVKHQHINIGLIDLQKVIIKITKYIPYQLINNKDALYELCRLIKEFI 141 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 ++ + I L G I+ E G + + E PL LE+ G+ +++D Sbjct: 142 YNTSIPKYKILGLGINLSGRINHETG---YSYNFFNFYEDPLSTILEKELGIKTMVENDS 198 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 A E G + DV+ + +D+ +G G++ + L + S E+GH + Sbjct: 199 RAMAYGEFSAGVVKEEEDVLFLNLDYGIGMGIMLNKKLYYGKSGFAGELGHVPLLNNEII 258 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT---VDSLCQAALRGDLLAKD 313 C CG GCLET AS ++ + + R+ ++ + L V + +AA D+L+ + Sbjct: 259 CQCGKKGCLETEASGQGLIRMFKTRVEAGSTTTIDKNKLGQLQVQDIIRAANNDDVLSIE 318 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 ++ +G +GR +A+++N+FNP+ I++G L++ + + I ++ + +L + + Sbjct: 319 LLAKMGEILGRGIAMLINIFNPELIVLGGLLAETGEYIQLPIKSAVNKYSLSLMNNDTKL 378 Query: 374 ESTQFSNQGTMAGAALVKDA 393 + ++ + + G+ L+ Sbjct: 379 KLSKLGEEAGVIGSCLLIRN 398 >UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASC3_STRRD Length = 397 Score = 316 bits (812), Expect = 6e-85, Method: Composition-based stats. Identities = 100/393 (25%), Positives = 166/393 (42%), Gaps = 19/393 (4%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 MV + + +++ N + R + GP SR +LS L L+ AS++ + +++ ++ Sbjct: 1 MVRPERRT-VRDLRRGNRAVLLRTLYFEGPTSRHELSGLTGLSAASVSNVTGDLIADGII 59 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-- 118 E + E+ GRP V L V+ E + + + + + + L DL + L Sbjct: 60 VEAGLVESDG-GRPRVLLRVDPEFGYAIGVDVGETHVRVELFDLDMNERAKADYPLRPGR 118 Query: 119 KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 D ++ I+S ID R+ + I +PGI+++ + + +PL Sbjct: 119 HDVDLVVRHILSGIDAVLAAGGVDPARVLGVGIGVPGIVESGPEALIHAQTF-GWDAVPL 177 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 G L T +P+Y+ + AE FGA RG R I +I GA +ITDG Sbjct: 178 GTLLRAGTSLPLYVDNGAKTMGQAELWFGAGRGTRHTIVALIGSGAGASIITDGIAYRGA 237 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 +SS E GHT++ G+ C CG GCLE +SIL+ A L + + Sbjct: 238 NSSAGEWGHTKIMMGGRACRCGGRGCLEAYIGAESILDRAGLSAEIADEQAV-------- 289 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAADILFPVISD 357 L + G +I ++G LA ++NLFNP++I+IG I Sbjct: 290 -LAELVRSGGP----VIDETADYLGAGLANLINLFNPERIVIGGWAGLLLGRHHLTRIRR 344 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 S +L S+ + GAA + Sbjct: 345 SAADNSLTQPYGTASIVLGRLGPDAVALGAATL 377 >UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG67_9FIRM Length = 398 Score = 316 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 91/402 (22%), Positives = 178/402 (44%), Gaps = 9/402 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + G+ +K N V +++ GP+SR +++ A L+ + T I+ ++ A L+ Sbjct: 1 MAGTARGGNAQDMKTRNRLLVLQMLCTYGPLSRGEIAARAGLSKMTATNIISDLETAGLI 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E E E+ GR + + + + I R L DLS+++V ES Sbjct: 61 AE-EKGESAGAGRRPGLIRLSPASPLVCGITIGRRRCEAVLADLSAQIVARESACYDNAL 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 D P L +++ + ++ + + I + G +D G + P + + +P+ Sbjct: 120 DGPRLSELLARLCSRLLKRVDRP--VAGIGVAALGPLDARAGTLLNPPNFYGIGHLPVRA 177 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L +G+P + HD+SA +AE L+GA + + I +GAG++ DG L + Sbjct: 178 ILSDASGLPCVLLHDVSAAALAEQLYGAGQAFESFFYLQIRDGIGAGMVLDGALFDGVAG 237 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 E+GH ++ G +C CG GCLE AS ++L A+ ++ ++ P Sbjct: 238 LSGELGHVSINFEGPQCACGGRGCLECYASERALLAYAREYAARTGTAA----PENWSDA 293 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 AA GD + +V L+ + L + ++ +G +L ++ + Sbjct: 294 ISAAGTGDAACAAALERYCGYVAAALSNALCLIDVHRVFVG-YDGDGGGLLERLLEQRVN 352 Query: 361 QQALPAYSQHISVESTQFSNQGTMAG-AALVKDAMYNGSLLI 401 ++ A + I+V + F + ++ G AAL +++G+ + Sbjct: 353 ERLHIAGCRRITVRRSSFGSDASVYGAAALAARCVFDGAFAL 394 >UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5RGV2_CLOCL Length = 393 Score = 316 bits (811), Expect = 8e-85, Method: Composition-based stats. Identities = 70/386 (18%), Positives = 169/386 (43%), Gaps = 20/386 (5%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + IK+ N V L+ + +++ D+++ ++ ++ + E++E V+E + ++ Sbjct: 11 DQETIKKINQNNVLYLLYRHDQLTKHDIAKKLGISIPTVVTNINELIELGFVEEAGVGKS 70 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 GR V + ++ + + + I++ + + L +L +++ E S + ++L +D I Sbjct: 71 TG-GRKPVIVKFLPDSRYSMGVVITKDYVRMVLTNLHFEIIKEVSISID--EELQSIDYI 127 Query: 129 ISHIDQF----FIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 I + +F ++ I +LPG ++ + I+ +K + Sbjct: 128 IEAVKEFQKNVCEELSIDENKILGIGFSLPGTVNEKTLILENAINL-GIKNIDFKNY--- 183 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 PVYI+++ +A AE + +I V I +G G++ + L + E Sbjct: 184 DFNCPVYIENEANASAYAEYFVYPDKSNSKLIFVSITEGIGTGIVFNSLLYKGANKRAGE 243 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 GH + GK C CG +GC E AS ++L+ + + L + ++ + + Sbjct: 244 WGHMTIVKDGKSCACGKNGCWEVYASSKALLKTY------NKDTGLKRRNIS-EIFMEL- 295 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 D + ++ ++ + ++ + +P KI+IG ++ D + +++ + + Sbjct: 296 -DEDYKTQKVVDEYLEYLAEGIKNIILIMDPDKIVIGGEIAFYEDYIKEALNEKVYKPNA 354 Query: 365 PAYSQHISVESTQFSNQGTMAGAALV 390 ++ +E T+ ++ GAAL+ Sbjct: 355 FFTAKDCKIEFTKLKANASVIGAALL 380 >UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F498_ACIC5 Length = 402 Score = 316 bits (811), Expect = 8e-85, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 174/384 (45%), Gaps = 15/384 (3%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 + ++ N + +I P+SR DL+R++ L +++++I+ +++E ++E + Sbjct: 12 ASSETARRINRDILLEIIRARQPISRADLARVSGLQRSTVSQIIEQLIEELWIREGAVAR 71 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 RGR LV+ + L+ + + +A+ DL+ +++ L+ D + Sbjct: 72 LP-RGRRPTMLVLNED-VVVLTADLHPRKAAIAVIDLNGRVLSHAELSLS-HDPAKVATA 128 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 I+ + + H +K R + ++LPG +D++ + P + L +AL + Sbjct: 129 ILECMRRLRQAHPEKSFR--GVGVSLPGRVDSQTQRLIFAPNLH-WPDFDLRQALAKGLR 185 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +PV +++ +A +E FG +G ++ + + + +G G++ +G L+ + E GH Sbjct: 186 MPVEMENAANACLTSELWFGRMQGVQNAVLITVSEGIGGGILANGQLVTGQNGMAGEFGH 245 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 +DP G RC CG GC ET AS + L Q S + + L Sbjct: 246 ISLDPRGPRCGCGQRGCWETFASCKAALRHYQESSGAS-------RRIAYQDLLALGAEK 298 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + A +T +GR L +++ +P+ +LI ++ A +++ P + + Q L Sbjct: 299 NPHAVGALTEQARQIGRGLRLVIASLSPELVLIAGEVTSAWNLVAPALRKEMEAQWLGGT 358 Query: 368 SQHISVESTQFSNQGTMAGAALVK 391 +E T S+ + GAA + Sbjct: 359 MP--RIEPTFDSDAARLRGAAAML 380 >UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A9_SOLUE Length = 387 Score = 316 bits (811), Expect = 8e-85, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 171/396 (43%), Gaps = 15/396 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 Q + ++ N V L+ P+SR DL+R + L ++I+ IV +++E + V Sbjct: 5 AKRPQGASSEVVRDINRRIVLNLVRTRQPISRADLARASGLQRSTISLIVEQLIEENWVL 64 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E RGR L + + + + I + +AL D + K +E D Sbjct: 65 EGPTGRLP-RGRRPTFLRLNDD-RVIIGVDIRPIQTTVALADANGKFTSQEVMSTPG-DP 121 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L ++I+ I + + K+ + I I+LPG D + + P + ++ + + Sbjct: 122 KLALTQLIAAIKRIKSTCRGKM--IEGIGISLPGRFDHSSNRLVFAPNLK-WTDIDIRDP 178 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 + + TG+ V +++ +A +AE F R+++ V + +G GV+ +G L+ S Sbjct: 179 IVEQTGLDVELENAANACVLAEVWFDRVHECRNLVVVTVSEGIGTGVLANGALVRGLSGM 238 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E GH +DP G C CG+ GC E AS + L + + L+ L Sbjct: 239 AGEFGHVPLDPTGPTCGCGSRGCWEIFASNRAALRYY-------LETGSTETGLSFTDLL 291 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A +GD A+ + + ++GR + ++V P++I++ L+++ VI I+ Sbjct: 292 SRADQGDSRAEKALDMMAHYLGRGMRMIVAGLAPERIVVVGDLTRSWQRFGSVIEAEIQA 351 Query: 362 QALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYN 396 Q LP + + G ALV ++ Sbjct: 352 QVLPGGVVP-KLVPAFEDGMARLRGTVALVLQKHFS 386 >UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH81_KOSOT Length = 386 Score = 316 bits (811), Expect = 9e-85, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 182/386 (47%), Gaps = 18/386 (4%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 + NA + ++ + +SR++LSR+ L +++ I++E L A +V+E K GN Sbjct: 7 KDTRIKNAITLLHILLKQDGISRVELSRITGLTKTTVSSIIKEFLAAGIVEESPTKPNGN 66 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEES-QELALKDDLPLLDRII 129 G+ + L ++ A + L + + R I L D S K+++E + D +L+++ Sbjct: 67 VGKTPISLHIKKNAVYTLGVHLGRHNIKTVLMDASMKVLMESNGLSYKKNDPDSVLEKLY 126 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 I+ + +K ++ I I +PG +D E G++ P +E +PLGE +++ +P Sbjct: 127 LDINHIMEKAEKHGIKVGVIGIGIPGPLDPETGVIKCPPKFEGWINIPLGEIIQKKYKLP 186 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V+I++D + +AE G ++ ++ + ++++ +GAGV+ + L + EIGH+ Sbjct: 187 VWIENDANVAALAEKWHGGAKYLKNFVYILVNEGIGAGVVINDELYQGTHDYVGEIGHSL 246 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 +G+ Y LE + VD + +Q S L+ +++ + + Sbjct: 247 FYVHGQFKY------LEDLYGVDVL-------TSQIKSCGLNAH--SIEDVANLLKADNK 291 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 + I+ + ++ +++L NPQ + IG ++ + L + + + Q Q Sbjct: 292 IVYSIVRDSAKWLSIVVLNVIHLLNPQAVFIGGTMAALGNYLIQPVKEIVSQYLFGD--Q 349 Query: 370 HISVESTQFSNQGTMAGAALVKDAMY 395 V+ ++ S+ GA + A + Sbjct: 350 ETDVKLSEISDNAVAIGAGIYATAKW 375 >UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CNA8_VARPS Length = 389 Score = 316 bits (811), Expect = 9e-85, Method: Composition-based stats. Identities = 78/366 (21%), Positives = 163/366 (44%), Gaps = 8/366 (2%) Query: 32 SRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLR 91 SR ++ + + ++ ++E L+ E ++ + GR A L + + + Sbjct: 14 SRHAMAEQLGFSKSKANALIAGLVEQGLLAEAGLQRSSG-GRRAENLQLHAGLGVLVGID 72 Query: 92 ISRGEIFLALRDLSSKLVVEESQELALKDDLPL-LDRIISHIDQFFIRHQKKLERLTSIA 150 I + +A+ ++ + + +++ + L R+ + + R + + I Sbjct: 73 IGATSLDVAVLRPDLSVLAQHDEPADVREGPAVVLARVRVLMRELLARCGHGPKNVLGIG 132 Query: 151 ITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASR 210 I +PG ++ E G + P + + L + PV++ +D++ + E R Sbjct: 133 IGVPGPVNFEIGQLVNPPLMPAWDSFSIRDYLREDYAAPVFVDNDVNLMALGELWR-LKR 191 Query: 211 GARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIAS 270 + + + I +G G++ G + + S ++GH VD G RC+CGN GC+E +A+ Sbjct: 192 SLNNFLVIKIGTGIGCGIVCHGEVYRGAAGSAGDVGHICVDQDGPRCHCGNVGCVEAMAA 251 Query: 271 VDSILELAQLRLNQSMSSMLHG-----QPLTVDSLCQAALRGDLLAKDIITGVGAHVGRI 325 +I +A S+ML + + QA+ GD A II G +G++ Sbjct: 252 GPAITRMAVQAAEAGESAMLAECLRVHGRIDAIDVGQASRAGDTAANGIIQRAGNLIGQM 311 Query: 326 LAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMA 385 LA +VN FNP + IG +++ + + S+ Q++L ++H+ ++ T QG + Sbjct: 312 LASVVNFFNPSHVFIGGGITRIGPLFLAAVRQSVYQRSLALSTRHLEIQYTPLGVQGGLV 371 Query: 386 GAALVK 391 GA ++ Sbjct: 372 GAGVLA 377 >UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB Length = 421 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 174/381 (45%), Gaps = 6/381 (1%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + DQI++ N V + + + GP++RIDL ++ +L+PA++T I ++L+ L+ LE Sbjct: 3 RKADRDQIRRQNRSIVLQALRRNGPMARIDLGQMTRLSPATVTAITSDLLDQELILSLES 62 Query: 66 KEAGN---RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA--LKD 120 +E RGRP L + +A + + +R+S I LAL + + ++V E +D Sbjct: 63 EEPKAPQARGRPRTLLKLNPDAVYTIGVRLSVNNIDLALVNFAGEVVRSERSHFDSATED 122 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + +I I QF R+ I + G+++TE G+V P + +++P+ Sbjct: 123 AASFPETLIGTIRQFLNDAGIVPSRVREIGVAAQGVVETETGVVAWSPAFAG-RKIPIVG 181 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L G YI +D + T A +R + +++D+ VG G+ D L S Sbjct: 182 PLHDAFGADCYISNDTNMITEALHWSDPNRYSGTFAVIMLDYGVGMGLYLDNRLFSGASG 241 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + E GH P G C CG GCLE S +++ A + S + + L Sbjct: 242 TAAEFGHANHLPGGALCRCGKKGCLEAYLSDYALVRAASHLPENTDPSTIKAGVGGLARL 301 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 + A GD A + G +G LA ++ + +P++I++ +A + + + + Sbjct: 302 IELAGSGDKDACNAFHEAGRVLGYGLARVIAMIDPKRIVLTGAAMRAFSFMEKGMWEGLE 361 Query: 361 QQALPAYSQHISVESTQFSNQ 381 + + + S++ ++ Sbjct: 362 EALVADLRNNFSLDVMPWNED 382 >UniRef50_D1NYQ4 Protein mlc n=3 Tax=Providencia RepID=D1NYQ4_9ENTR Length = 403 Score = 315 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 152/405 (37%), Positives = 247/405 (60%), Gaps = 5/405 (1%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 NQ GHIDQIKQ N G VYR+I Q GP+SRI LS+ +QLAPASITKI RE+++AHL+QE Sbjct: 2 TNQTGHIDQIKQLNTGIVYRVIAQHGPISRIALSKQSQLAPASITKITRELMDAHLIQER 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E G RGRPA+GLV E+E W +L++RI ++ L+L+++SSK + E S +K + Sbjct: 62 EFPVLGLRGRPAIGLVTESEGWQFLAIRIENNQLTLSLKEISSKTLAENSYSFDVKGNQQ 121 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 ++ + + FF +++ LER+T+I+I L GI+D+ +G+++R+P Y D+ +P+ L Sbjct: 122 FCLQLSALMSLFFEQNKNCLERVTAISILLDGILDSSSGVIYRLPNY-DLDALPISNYLT 180 Query: 184 QHTGVPVYIQHDISAWTMAEAL-FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + TG+PVY+ ++A + + L + R +++I + + V V+ L + + Sbjct: 181 EQTGLPVYLNPSVNALALMDNLSYSTQRRNKNIIYLQLHDVVNIAVLNQEKSLDSSTRHP 240 Query: 243 VEIGHTQVDP-YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 + GH V+ G CYCG GCLET+ SV SIL+ A++ L +S+L+ + + ++++C Sbjct: 241 ILFGHIPVEILQGLDCYCGGKGCLETLVSVSSILKQARILLADYPASILNQKEINIEAIC 300 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 Q A D L I+ V + LA+M+N+ Q ILI SPL+ + + + + I Sbjct: 301 QGANIADSLCLKILDSVAQQLAHPLAMMINILGTQLILINSPLNSSDEYWYTQLHHYINL 360 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 P Y + +E + FS + + A++ ++Y+GSLL++LLQG Sbjct: 361 YVNPLYRSKLLIEKSTFSIKESET--AVIHHSLYDGSLLLKLLQG 403 >UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6LW15_CLOB8 Length = 382 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 79/383 (20%), Positives = 181/383 (47%), Gaps = 15/383 (3%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + +IK+TN + L+ + ++++D+SR+ ++ +++ + E+ +V+++ E+ Sbjct: 5 NHSKIKETNRKKIIALLLKKNEITKLDISRILDISITTVSTNITELKSEGIVEDVRSLES 64 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 GR A+ + + + + + ++ I ++L ++ K++ +++ + Sbjct: 65 TG-GRKAIAIKLNENCRYSIGVALTPNHIKISLVNIKKKVIESMRVRHNSDGIENIINLL 123 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 +ID ++ L I I+LPG +D + GI+ + K+ L E E + + Sbjct: 124 NENIDLLMKKYNLCSANLLGIGISLPGTVDFKEGIIKYS-YLLGAKDFNLKEKFE-YLDI 181 Query: 189 PVYIQHDISAWTMAEALFGASRG-ARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 PVY+ ++ + E F R R+++ V I +G G+I +G + ++S E+GH Sbjct: 182 PVYVDNEANLSAYYE--FLNKRDILRNLLYVSITEGLGLGIIINGKIYRGDNNSSGELGH 239 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 T++ GK+C CG GCLE S++S+++ + ++S +D + + Sbjct: 240 TKIAIDGKKCKCGARGCLEAYTSMNSLIDSYNEANSSNIS--------DIDEFEERYNQN 291 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D A D++ + L+ +V +F+P I+IG ++ + ++ + + L Sbjct: 292 DKDAHDVLNDYLKTLSLGLSNLVMIFDPSSIVIGGDINNLLNDKIDMLKKEVYKDNLFTN 351 Query: 368 SQHISVESTQFSNQGTMAGAALV 390 + S+ F + + GAA++ Sbjct: 352 ENNCSISIASFK-ESYLLGAAMM 373 >UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9WJ57_CHLAA Length = 408 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 104/391 (26%), Positives = 185/391 (47%), Gaps = 6/391 (1%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + + N V RLI +LG VSR DL+RL L +++ +V E++E LV Sbjct: 1 MTTLGEKATRQHTRDVNLRLVLRLIYELGAVSRADLARLTNLTRTTVSDVVGELIERGLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E + G GR + L V + ++ ++ + AL L + S+ + + Sbjct: 61 IETGLATGGGIGRTPMLLSVAEWSRPVAAISVNADSVEGALVSLRGNVGRRISRSIQGQT 120 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L+ + +D+ + L I +T PG+I+ +G++ R E ++PLG+ Sbjct: 121 GADALNTLQETLDELIQTANQP---LLGIGVTTPGLINASSGMIVRAVGLE-WADLPLGQ 176 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L + G+PV + +D +AE LFG RG +++ + I VGAG++ +G L Sbjct: 177 LLHERYGLPVKVVNDSQCLALAEHLFGEWRGVANLVVLKIGKGVGAGIVLNGQLYAGEGF 236 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML--HGQPLTVD 298 EIGH G C CGN GCLET+ D++L A+ + + +S+L + L++ Sbjct: 237 GAGEIGHLAFTANGLLCKCGNRGCLETVLGSDALLHQARTAIAANPNSILAAYASDLSLG 296 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + + A GD +A+ +IT A G +A +++L + + +LI ++ + ++ Sbjct: 297 RIAEGAAMGDPVAQHVITTAAAATGAAVATIISLLSVRHVLITGRITAFGETFAELVRRE 356 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAAL 389 + Q+ALPA + + + GAA Sbjct: 357 VAQRALPALVRDTEIRLAPAPTITPLIGAAA 387 >UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP32_9FIRM Length = 406 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 95/401 (23%), Positives = 169/401 (42%), Gaps = 16/401 (3%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + +KQ N G + +LI SRI+LS+ LA ++T IV E LE + +E + + Sbjct: 12 NNTLLKQRNRGLILKLIATGQCSSRIELSQKTGLAKMTVTYIVNEFLERGIFEERQKVQV 71 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 +GR V L + +A + + + R + L D+ KL+ + + + L++ I Sbjct: 72 EGKGRNPVQLCISDKAPKLIGVHLYREICSVILCDIQLKLLKKICFPVTEETAPQLMEHI 131 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 +DQ + I P +D G + P + + ++ + +E+H + Sbjct: 132 FHALDQIMETLGDEKIYGIGIGAIGP--VDKNRGKILAPPNFYGLHDLEIAREIEEHCHM 189 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PV+ + + + E +GA D I V + + VG+G++ +G L S + E+GHT Sbjct: 190 PVFFDGESNCAAIMEKYYGAGTDCEDFIYVDLANGVGSGLVVNGELYANTSGMICELGHT 249 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 +D G+ C CGN GCLE S + + Q Q + +A G+ Sbjct: 250 SIDWQGEPCSCGNRGCLERYISSNVLESQLQKVTGDMKDFRGFCQEMD-----EAIKEGE 304 Query: 309 --------LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 + T + + L VN NPQKI+IG D I + Sbjct: 305 GNTFTKRQQDMDRVFTEMTEKLSCALVGFVNSLNPQKIIIGHEGYWIPDPYLCKIEKLVN 364 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLL 400 ++ + + I V + F ++ T+ G + A++ GS Sbjct: 365 ERHIERKYRQIQVVKSGFKDEATVYGCTGALLTAVFEGSFF 405 >UniRef50_B2GIX7 Putative NagC family transcriptional regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GIX7_KOCRD Length = 421 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 101/391 (25%), Positives = 182/391 (46%), Gaps = 17/391 (4%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + PG ++ N V + LG V++ ++R LAP++++ IV+E+ L+ Sbjct: 40 SAPGSQAALRLANRRRVVDAVRGLGAVTQARIARETALAPSTVSSIVKELTACDLL---- 95 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL-P 123 E + GR + A H L + + + +AL DL+ +++ + EL+ + Sbjct: 96 TVEPDHGGRRGQRVRFSASAGHLLGVDVGHRHVAVALADLNLEILAQRRAELSPRHGARE 155 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +LD D+ ER+ I LP +D + + + + E Sbjct: 156 VLDVARGMADELRDELGIPAERVLRAGIGLPAPVDAQGRGLDSAVILPHWSGLDVRELAA 215 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G PV +++D +A ++E GA RGARD+ + + H VGAG++ G L + + Sbjct: 216 HVLGCPVVVENDANAGAVSEHALGAGRGARDMAYLKVSHGVGAGLVLGGTLYRGATGAAG 275 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL-TVDSLCQ 302 EIGH +D C CGN GCLET S ++LEL + GQP+ +V + Sbjct: 276 EIGHITLDERAGLCRCGNRGCLETFVSSAAVLELVR----------PSGQPVESVSDVVD 325 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 AAL GD +++ G +G ++A + NL NP+ +++G L++A ++L + ++ + Sbjct: 326 AALAGDPGCSRVVSDTGRVIGVVVAQLCNLLNPELVVLGGDLARAGELLLEPLRTAVDRY 385 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 L S + V ++ + + GA L+ Sbjct: 386 TLHGSS-PVRVVPSELGPRAHLTGALLLARE 415 >UniRef50_D1NUM3 Transcriptional repressor in the Rok family protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUM3_9BIFI Length = 417 Score = 313 bits (804), Expect = 6e-84, Method: Composition-based stats. Identities = 100/396 (25%), Positives = 182/396 (45%), Gaps = 11/396 (2%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 + + N V + GPVSR +++ +L PA+I+KI +++EA L++E + R Sbjct: 29 LSEHNRSRVLHHVYHHGPVSRATIAKALELTPAAISKITAKLIEAGLLEETGDMQGEGR- 87 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVV-EESQELALKDDLPLLDRIISH 131 R ++GL + A+H S++ +R + + + DL+ + +E + LD + S Sbjct: 88 RRSIGLRMNKSAFHVASVKFARTLVCIGVYDLAGNQLSMQEITAVEHTQIPETLDTVHSM 147 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 +++ + R+ +I + +PG G + ++ + + + VPV+ Sbjct: 148 LEKLLAK----DRRIIAIGMAVPGPYLRAVGRTAMVSSMQEWRAVNFIDEFSHSLSVPVF 203 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 I+ D A ++ LFG R + ++ VG GVI ++ + EIGH +D Sbjct: 204 IEQDARAGVLSYRLFGQGDADRHLAYYLLGEGVGLGVIDGDETINGELGAATEIGHVSID 263 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQL-RLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 G+ C CGN GCLE S SI E + SM H + ++L + A G+ Sbjct: 264 VNGRSCECGNVGCLERYCSAVSIHEELNESGIVADSESMTHREAC--EALFRLAASGNSQ 321 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 A ++ +G +VG ++N FNP +I++G +S D+L I + + LP + Sbjct: 322 AVAMVQRIGTYVGYGAVTIINTFNPSRIIVGDIVSGGGDLLLSAIRRVVDARILPELNAR 381 Query: 371 ISVESTQFSNQGTMAGAA--LVKDAMYNGSLLIRLL 404 ++ S + GAA V+ + N S +R L Sbjct: 382 TTIVLADASADASTKGAAGVAVEHFLANPSAFVRGL 417 >UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3V9_9CLOT Length = 386 Score = 313 bits (803), Expect = 7e-84, Method: Composition-based stats. Identities = 80/391 (20%), Positives = 157/391 (40%), Gaps = 31/391 (7%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M P H++ I++ N + ++ + PVSR L+R L+ +++ IV E++ L+ Sbjct: 6 MAKGGNPRHLELIRRINRSLILNMVKERQPVSRAQLARALNLSKTTVSSIVDELVRKKLL 65 Query: 61 QELE-IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK 119 E +G GRP+V L + + + + I+ + L + DL+ + + E + Sbjct: 66 VEYGDCCPSGGAGRPSVMLGFNPRSAYCIGIDIASANLRLIITDLAGEALYETKRP---- 121 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 + +I +++ K+E + + I +PGI+ E +V + PL Sbjct: 122 -PSSRMGELIGVVEEAVRDCGLKMEAVFGMGIGVPGIVTAEGSVVRA--KFLGWSNFPLK 178 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 +E+H PV++++ ++ + E G+ D++ V I +G VI G L+H Sbjct: 179 RLMEEHFPFPVFVENGVNLAALGERWLGSGDQVDDMLFVRIGTGIGGAVICGGQLIHGAG 238 Query: 240 SSLVEIGHTQVDPY---GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT 296 + EIG+ G G G LE S ++ G Sbjct: 239 GNAGEIGYFLESRDVELGNVNQPGQQGVLERKCSGAAL----------------TGHGRP 282 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + L A +GD A ++ + +A V+L P K +IG +S+ + + Sbjct: 283 TEELFAAYGQGDREAARVVEPFIRDLSVAIANCVSLLGPAKAVIGGDVSEQMSPVIYRLR 342 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGA 387 + + + L + + + GA Sbjct: 343 EEVER--LTPIRADVCL--ASLGGRAGALGA 369 >UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ANX8_SEBTE Length = 388 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 169/394 (42%), Gaps = 10/394 (2%) Query: 13 IKQTNAG--AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 +K+ N I +SRI LS +L PA++TKI++++ L++ I ++ Sbjct: 1 MKKLNITDYKALEEIRTNNKISRIKLSGSLELTPAAVTKIIKKLSGLKLIENNNILKSTG 60 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GRP L + L + I AL L +L+ + + ++ +L + Sbjct: 61 -GRPEKSLKINHRYKMILGINFGPEFIETALSYLDGELLCMKRRNFYIRSQEKILRILFE 119 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 ID + + + I + L G ++ E GI P + K + + E +E+ +PV Sbjct: 120 EIDNVLEEY--SKDDILGIGLALHGTVNREKGISIFSPHF-GWKNLNIQELIEKKYSLPV 176 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ- 249 I +D+ A +AE FG ++ + + + I + +G + +G S EIGH Sbjct: 177 IIDNDVRAMAIAEHEFGRAQNTDNFLVIHISNGIGGAIFLNGKTYEGSDFSAGEIGHITA 236 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 V+ +RC CG +GCLE +S ++I L + + L + + + A Sbjct: 237 VENSSRRCSCGKYGCLEAESSDEAIKNKVLTELEKIQEKV--DISLKTEDIYKMAAEKKE 294 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 ++ +G+ + ++N+ N + +++ + + F ++ I++ L + Sbjct: 295 PYFSVVRNSSYEIGKAVGNLLNILNIKLVIVAGRIVNTDSLFFVNLNKGIKKNILDGLEK 354 Query: 370 HISVESTQFSNQGTMAGA-ALVKDAMYNGSLLIR 402 + + + + GA +LV ++ G LI+ Sbjct: 355 DLHTVPAKLYDSIGIYGAFSLVTTNLFKGRKLIK 388 >UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium RepID=A5N8K8_CLOK5 Length = 317 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 149/308 (48%), Gaps = 3/308 (0%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIISHIDQFFIRHQKKLE 144 + + + + +I AL D ++ + + ++ +LD II I++ + Sbjct: 5 YVIGVDLGGTKIAAALVDFKGTIICKYTLPTKAEEGEKYILDNIIKIIEKVVNFGGVCSK 64 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 ++ I + PG +D + G + P K + L+ H +P+++ +D +A +AE Sbjct: 65 KIKCIGLGAPGPLDIDKGKIICTPNLP-FKNFNIVSPLKNHFKMPIFLDNDGNAAAIAEH 123 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 +FGA +G +++ + + +G G I +G + + + +EIGH +D G C CGN GC Sbjct: 124 MFGAGKGINNMVFITVSTGIGGGAILNGQIYRGNTKNALEIGHMTLDAQGPLCNCGNFGC 183 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHG-QPLTVDSLCQAALRGDLLAKDIITGVGAHVG 323 E +AS +I A+ + ++ L + +T + + A GD ++++I+ ++G Sbjct: 184 AEVMASGTAIAREAKKAVKMGYNTTLALYKNITSKEVFKEAQLGDSISQNILDTTLNYLG 243 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 +A ++ +P+ ++IG +SK I+F I++ ++++ S++ + Sbjct: 244 ICVANIITCLDPEAVIIGGGVSKGGKIIFDKINEVVKRRCFGTVSKNTRILPALLGTDAG 303 Query: 384 MAGAALVK 391 + GAA + Sbjct: 304 VIGAAALA 311 >UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K724_THENN Length = 388 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 171/386 (44%), Gaps = 23/386 (5%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + +IK N + ++I + P+SR D+S + L P+S+T++ +E+++ ++E+ Sbjct: 14 NSPRIKILNKKTILKVIHENHPLSRSDISEITGLTPSSVTRLTKELIDEGYIREIGTMGK 73 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 + GR V L ++ EA+ L I + ++ + + K+ Sbjct: 74 NSPGRRRVLLDLKKEAFLSLVFDIGVNITTYGIGFFDGEVELRGTFNTP-KNPEEFFKTA 132 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 ++ H I+ ++PG++D E + P + + + + LE V Sbjct: 133 REIYERISREHSITR-----ISFSVPGMVDLEEKKILLAPNL-GWENVNIEDLLE--VDV 184 Query: 189 PVYIQHDISAWTMAEALFGAS-RGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 PV ++ + +AE R + + ++I VG G++ DG + S + E GH Sbjct: 185 PVLADNEANLSMLAEKYHSEDLRNVEEAVFIIIREGVGTGLMVDGKIFRGPSFTAGEAGH 244 Query: 248 TQVD-PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 V+ ++C+C N GC E ++S++ +E L S ++ + Sbjct: 245 MTVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKELEGRNS---------IEKFQALKQK 295 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 D AK ++ ++ + +VN+ NP+ +++G + D F +I D +RQ+AL A Sbjct: 296 ND--AKRVLMRFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFFSIIEDFVRQRALKA 353 Query: 367 YSQHISVESTQFSN-QGTMAGAALVK 391 +++ + T F N + GAA++ Sbjct: 354 AVRNLKIRPTAFRNISSNLVGAAVLA 379 >UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=Actinomycetales RepID=D1BD00_SANKS Length = 395 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 178/394 (45%), Gaps = 14/394 (3%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 + T AG +++L+ P +R +L+ + A ++I + ++ + LV + GR Sbjct: 12 RTTGAGDLFQLLRDGQPRTRAELAAVTGQARSTIAARIDLLMASGLVAPAGEA-SSTGGR 70 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-LDRIISHI 132 P A L++ + LA+ DL+S ++ E +A+ D + L + Sbjct: 71 PPATFAFSPAARVVLAVDLGATHAHLAVTDLASTVLAELEAPIAIADGPDVILGWVAQTG 130 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 ++ + + L+ L S+ + LPG ++ G P ++ + L G V + Sbjct: 131 EELVLSTGRTLDDLVSVGVGLPGPVEHSTGRPINPPIMPAWDDVDVPGGLSARLGASVLV 190 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV-D 251 +D++ + E G D++ V + +GAG+I+DG L + +IGH V D Sbjct: 191 DNDVNIMALGEHRT-EWPGVSDLLFVKVATGIGAGIISDGALRRGAQGAAGDIGHVAVSD 249 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 C CGN GCLE +AS ++ + SS + + GDL A Sbjct: 250 RSEVPCRCGNLGCLEAVASGQAVAAQLAATGLAATSS---------NDVVALVRAGDLYA 300 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 + G +G +LA V+L NP I++G ++ + + L I + + +++LP +QH+ Sbjct: 301 SRAVRQAGRDIGTVLAGCVSLLNPSMIVVGGVVASSGEHLIAGIREVVYRRSLPLATQHL 360 Query: 372 SVESTQFSNQGTMAGA-ALVKDAMYNGSLLIRLL 404 + +++ N+ + GA A+ D + + + + L+ Sbjct: 361 RIVASRTGNRAGVLGASAMAVDHVLSSAAIDALI 394 >UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar 6b str. SLCC5334 RepID=A0AF76_LISW6 Length = 378 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 93/393 (23%), Positives = 170/393 (43%), Gaps = 21/393 (5%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + I+++N V I Q GP SR LS L A+I+ IV++++ L+ E+ I E+ Sbjct: 4 NRTVIRESNERIVLNTIAQKGPHSRALLSDTIGLNKATISDIVKKLIAQKLINEVGIGES 63 Query: 69 GN-RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 N GR + L + +A +S+ I I + + L E + ++ Sbjct: 64 TNLGGRKPIMLELNAKAGFSVSVDIGYNYIDVMAQRLDGTAYKRELFPFIVIKRETIIQE 123 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGII-DTENGIVHRMPFYEDVKEMPLGEALEQHT 186 I +D F K + I I + G++ D + + P Y D+ + AL + Sbjct: 124 ISDILDVFLSSLPKSPFGIVGILIAIHGVVLDNQ---IQFTPAY-DLAGLDFSSALHEQF 179 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 PVY++++ + +++ S +++ + I +G+GVI + L + EIG Sbjct: 180 ACPVYLENEANLLAVSDHTKEES--YANLVSISIHSGIGSGVILNNELYTGINGYAGEIG 237 Query: 247 HT-QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 H V G+ C CG GCLE AS +IL+ Q R + V LC+A Sbjct: 238 HMQIVTENGRPCPCGASGCLECYASEKNILDTYQTRTGN--------KNALVTDLCRAFT 289 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 + A +I + ++ + + L+NP+ I I S +S+ L P + I + Sbjct: 290 EKEEEAMAVINDMVRYLATGIQNLTALYNPEIIFINSEISR----LIPDFTKQIESRLTS 345 Query: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMYNGS 398 S++I+++ + + + GA + + S Sbjct: 346 FTSKNIAIKESHLGEEAILYGAGYLIIQRFLAS 378 >UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C6B3W7_RHILS Length = 405 Score = 310 bits (796), Expect = 5e-83, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 159/370 (42%), Gaps = 15/370 (4%) Query: 28 LGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHY 87 GP SR D++ + L+PA++T +V ++LE +V E G GR + + + E Sbjct: 25 EGPRSRADIATVIGLSPAAVTFVVADLLEEGIVIE-GKTVPGLTGRRPIPVDINYEHALA 83 Query: 88 LSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLT 147 + ++ + DL++ V L D + D + S + + + +L Sbjct: 84 VGFKLMVDSVECVATDLATNPVAAMRVSLGGHDPDKVADLLASTVPELVKLAGRPNAKLA 143 Query: 148 SIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFG 207 I I++PG+I+ E R ++ +PL + VPV+++ D +A+ +A+ LFG Sbjct: 144 GIGISMPGVINHEQTACVRSYRFK-WDNVPLASLVASRVHVPVWLEDDTNAYAIAQQLFG 202 Query: 208 ASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLET 267 R R++ + + + ++ DG L + + + GHT + G+ C CG GCL Sbjct: 203 LGRQHRNMAVLAVGVGISCALVIDGKLYRGANGAAGKFGHTLYEENGRLCECGKRGCLMA 262 Query: 268 IASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILA 327 S S+L + + + L + L A GD A ++ G +G LA Sbjct: 263 YHSEISMLRRWREATGR--------EELGLPELSAALASGDTTALALVADSGRGIGTALA 314 Query: 328 IMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAG- 386 +VN+ +P+ I+ G D + +++ + + + + G Sbjct: 315 NLVNITDPEVIVAGGEAVSLGDPFLTPLREALSARTFRTAPPLLP----DWEDNSWARGA 370 Query: 387 AALVKDAMYN 396 AALV +++ Sbjct: 371 AALVTQKIFD 380 >UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSD8_ACIC1 Length = 420 Score = 310 bits (796), Expect = 5e-83, Method: Composition-based stats. Identities = 87/396 (21%), Positives = 163/396 (41%), Gaps = 12/396 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 + LI + V+R +L + + +I + + ++ L+ E E + GR G Sbjct: 15 LAQLLALIRRGSAVTRSELVQSSGFGRTAIARRLDHLMALGLIAESEPLPSTG-GRMPRG 73 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFF 136 + +A L + I + DL +++ + + L R+ + + + Sbjct: 74 VYFRADAGRLLVAELGATSIAAGICDLDCRVLSSREEAWDIAAGPESTLARLEALLSELL 133 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 HQ ++ I + LPG I+ G P P+ E L + PV++ +D+ Sbjct: 134 RDHQA---KVWGIGVGLPGPIEFATGRPVSPPIMPGWDRYPVRERLAKRFSAPVWVDNDV 190 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV-DPYGK 255 + + E G R D+I + I +GAG+++ G L +IGH V D Sbjct: 191 NVLALGELRAGVGRAHSDLIYIKIGTGIGAGIVSGGRLHRGAQGCAGDIGHVAVTDDQAV 250 Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL-----CQAALRGDLL 310 C CGN GCLE +A ++ A + S L + L A GD Sbjct: 251 VCRCGNIGCLEAVAGGAALARRATAWAREGRSGYLQQRLTEGGDLTAATIAAGAAAGDTG 310 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 +++ +G LA VN FNP ++IG +++A + I + ++LP ++ Sbjct: 311 CVELLAAAARQIGDSLATFVNFFNPSIVIIGGGVAQAGNAFLASIRQRVYSRSLPLATRD 370 Query: 371 ISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRLLQ 405 + + + + G + GAA +V D + + +L ++ Sbjct: 371 LQIVLSSLGDIGGLIGAAHMVVDEILSPKVLSLWIK 406 >UniRef50_D2BD51 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangineae RepID=D2BD51_STRRD Length = 401 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 177/379 (46%), Gaps = 16/379 (4%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + QP ++ TN V R + + P SR D++ L A+++ +V ++++ LV+E Sbjct: 7 DPQPADFADVRATNLAVVLRFVREHAPCSRADIAASTGLNKATVSSLVADLIDRRLVRET 66 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--D 121 + E GRPA LV++ + + + ++ + DLS + ++ + + Sbjct: 67 GLTE-NRVGRPATMLVLDGSPYAAIGVEVNVDYVTAVAVDLSGERLLSWRRSFSGATITA 125 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + + + + + R K+ ++ +A+ +PG++ +G V P ++ L Sbjct: 126 AQAVATVAAIVRRVVNRMAKEERQVLGLAVGVPGLV-GTDGTVRIAPNL-GWRDADLCGD 183 Query: 182 LEQHT---GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 L + G PV + +D + +AE FG G +++ + + VGAGV+ DG L G Sbjct: 184 LTKALRDPGFPVQVDNDANLAALAEHRFGPRAGTANLVYLTGEIGVGAGVVLDGRLRRGG 243 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 EIGH Q+DP G C CG GCLE +A + ++LE A L + + +D Sbjct: 244 QGYGGEIGHIQLDPLGAECRCGRLGCLEAVAGIGAVLEHAALSPAEV--------EIELD 295 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + + A D ++ VG ++G+ +A++ NL NP+ +++G A L P + Sbjct: 296 EVVRLARAADPRILAVLATVGHNLGKGVAVIANLLNPEVVILGGYYVPLAPWLLPAVEAE 355 Query: 359 IRQQALPAYSQHISVESTQ 377 +R + + + V ++ Sbjct: 356 LRGRTIAPDAGGCQVVAST 374 >UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID=C6WCK9_ACTMD Length = 435 Score = 310 bits (795), Expect = 7e-83, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 166/401 (41%), Gaps = 15/401 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + + +++ N A+ + GP+SR +L L+ A+++ +++ LV Sbjct: 12 PAKRATVRDLRRHNRSALLSTLYFEGPLSRQELVARTGLSAATVSTATAGLVDERLVVGA 71 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GRP L V H + + + + + L DL+ + + +L D L Sbjct: 72 GTVESDG-GRPRSLLRVNPGYGHVVGVDVGETGVAVELFDLALRRIAALDHDLPPTDPLA 130 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYE----DVKEMPLG 179 + I + + + + + I +PG ++ G +PL Sbjct: 131 VGALIAAAVPEVIALAGADQGSVLGVGIGVPGEVERRGGAWGAATLVHAQTLGWSGVPLA 190 Query: 180 EALEQH-TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 E + T +P+++++ AE FGA RG+R V+ ++ VGA V+ DG + Sbjct: 191 ELVRAGGTTLPLFVENGAKTQGQAEMWFGAGRGSRHVVVALLASGVGAAVVADGAVQRGS 250 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRL--------NQSMSSML 290 +SS E GHT V G+RC CG HGCLE ++LE + + + ++ Sbjct: 251 TSSAGEWGHTTVVHGGRRCRCGAHGCLEAYVGAGAVLERYRGLGGELGEGDERAAFAELV 310 Query: 291 HGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAAD 349 G LA ++ ++G +A +VNLFNP+ I++G + + Sbjct: 311 ALAGGGTLGGGSPPAGGAQLATRVLEEAVGYLGAGIATLVNLFNPELIVLGGWAGAALGE 370 Query: 350 ILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 P I + R+ AL + +E+ + GAA + Sbjct: 371 GWLPSIVAATREHALRHPFARVRLEAGRLGPDAVAVGAATL 411 >UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C348_BEUC1 Length = 410 Score = 310 bits (795), Expect = 7e-83, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 166/375 (44%), Gaps = 15/375 (4%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN-RGRPAV 76 A V+ I GP+SR +L L L +++ ++ ++ LV E ++ +G+ GR A Sbjct: 10 AARVFGEIWHHGPLSRSELVALTGLTKSTVFQLTEDLQRDGLVVETGLRTSGSQGGRRAT 69 Query: 77 GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFF 136 L +A + + + +A+ D +++ S+ + + R+ I + Sbjct: 70 LLQANPDAVRVVGVHLGGTRTSVAITDTFGRVLDARSRPTVRRRPDESVARVAEMIGELS 129 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 H +++ + +PG+ID + G+ P +++P+ + + P + + Sbjct: 130 AEHGAP----SAVGVAVPGLIDRDTGLCLVAPNL-GWRDVPVATLIGEAVQAPTIALNTV 184 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV----DP 252 A +AE + + + VG +ITDG+LL E+GH QV DP Sbjct: 185 QAMAVAEMAQLRPDERMTLAMLYVGTGVGTALITDGNLLRGARGLAGELGHLQVRDPGDP 244 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 +C CG GCLE++ D+I+ A R G+ LT + + + A GD A+ Sbjct: 245 EAVKCACGRVGCLESLVGADAIVRRATQR-----GIAAAGRRLTPELVGELASDGDAAAR 299 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 +I + +G A +V L NP +++ ++ D+L + +++ ++ P + + Sbjct: 300 SLIQDIAVEMGEAAAALVQLTNPDTVVVAGSVASMGDMLLDPLRETVVRRTQPELRESLD 359 Query: 373 VESTQFSNQGTMAGA 387 V + NQG + GA Sbjct: 360 VRRSLLDNQGKLRGA 374 >UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=A1WMZ8_VEREI Length = 372 Score = 310 bits (794), Expect = 9e-83, Method: Composition-based stats. Identities = 77/361 (21%), Positives = 168/361 (46%), Gaps = 8/361 (2%) Query: 37 SRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGE 96 +R + + +V +L+ ++ E+ ++E+ GR A L + L + + Sbjct: 2 ARRLAYSKSKANAMVAALLDEGVLDEVGLQESSG-GRRAETLRLSESLGAVLGVDMDATS 60 Query: 97 IFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPG 155 + LAL ++ + + + ++ +L ++ + + R +L +I + +PG Sbjct: 61 MQLALMRPDMAVLARQCETIDVRRGPGVILAQLCGLMRELMARCGLSSSQLIAIGMGVPG 120 Query: 156 IIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDV 215 +D +G + P D + + L + PV++ +D++ + L+ R D Sbjct: 121 PVDFASGQLVNPPLMPDWDGFSIRDYLREAFVAPVFVDNDVNLMALG-KLWRLQRTLSDF 179 Query: 216 IQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSIL 275 + + + +G G++ G + + S ++GH VD G RC+CGN GC+E +A+ +++ Sbjct: 180 LVIKVGTGIGCGIVCHGQVYRGTNGSAGDVGHICVDQAGPRCHCGNQGCVEAMAAAPALV 239 Query: 276 ELAQLRLNQSMSSMLHGQ-----PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMV 330 A + SS L + L ++ L QA+ GD+ A +I G+ VG++LA +V Sbjct: 240 RAAIEVAQKGESSWLAERLQASGSLGIEDLAQASRVGDVAANILIQRAGSLVGQMLASVV 299 Query: 331 NLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 N FNP + IG ++ + + S+ ++L ++H+ ++ ++ + GA ++ Sbjct: 300 NFFNPSHVFIGGLVADMGPLFLASVRQSVYHRSLALSTRHLEIQCAPLADDAALVGAGVL 359 Query: 391 K 391 Sbjct: 360 A 360 >UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile RepID=C9XQA7_CLODC Length = 408 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 168/383 (43%), Gaps = 26/383 (6%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG-NR 71 I++ N V I + GP+SR ++ L A+I+ I +++++ LV E+ I + + Sbjct: 30 IREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEIGIGNSTHSG 89 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR + LV A LS+ I IF +L L ++ + L D D +I Sbjct: 90 GRKPILLVFNKCAGISLSMDIGYDYIFSSLSYLDGTIINSKK----LTDIQVSKDNVIQL 145 Query: 132 IDQFFIRHQKK----LERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 ID+ + ++ + + + GI T V P+Y ++ E+ L L + Sbjct: 146 IDEIINSYNISKIDTPYKVIGLTLAIHGI--TCENKVLFTPYY-NLNEIDLYSILSKKYD 202 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 P++I+++ + +AE F ++ + I G+G+I + L + EIGH Sbjct: 203 FPIHIENEANLTALAENTFSTV--HNSLLSLSIHSGFGSGIIINNKLYSGRNGMSGEIGH 260 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 T + P GK C CGN GCLE S + E +SS+ + + D + Q Sbjct: 261 TIIMPNGKLCPCGNRGCLEQYCSEKKVFEQ--------LSSLENIPKIDSDIVKQLYYED 312 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + AK +I +++ + + + P+ I + S + P I + + ++ Sbjct: 313 NQNAKKVIHEFCSYLTIAINNAITTYAPEIIYLNSQIISD----IPEILQITKDMLVSSF 368 Query: 368 SQHISVESTQFSNQGTMAGAALV 390 ++ I++E + ++ ++ G + V Sbjct: 369 NKGINIEISSLGSEASLYGGSAV 391 >UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAU2_RUMHA Length = 399 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 170/388 (43%), Gaps = 20/388 (5%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 + + I+ N V I PVSR +L++ L A+I+ IV+E+LE + ++E+ + Sbjct: 18 ANQEMIRNNNRRLVLEFIINNPPVSRAELAKQLSLTKATISNIVQELLEQNFIREIGSAQ 77 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 GR + L LSL I +I L +L ++ + +D+ LL Sbjct: 78 TS-MGRKPILLEFNKAYGFALSLEIQPQQIIALLTNLKGEVQEIKKIPFCPQDN--LLQH 134 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 + ++ + + ++ ++I + G++ + + P+Y + + LG L++ Sbjct: 135 LEQILNFYIRENTAFKNKIIGVSIGIYGVV--QKNEILFTPYYP-LPKSGLGTHLQETFQ 191 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +PV+++++ + + EA F +++I + + +G G++ +G L E GH Sbjct: 192 IPVFVENEANLSVLGEAAF--HHKYKNMIHINVHDGIGMGILVNGRLYKGRDGYAGEFGH 249 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 T + P GK C CGN GC E AS +ILE R + + +T+ + Sbjct: 250 TILFPDGKPCPCGNQGCFELYASQRAILENYAARQKK--------ENVTISEFLKDYDAN 301 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 LA +++ ++ + ++N FN I++ S S P I+ I + Sbjct: 302 LPLAHEMMDLFVKYISIGINNIINTFNTDIIVLNSAFSNH----IPDINQRISEYLAGHQ 357 Query: 368 SQHISVESTQFSNQGTMAGAALVKDAMY 395 ++ ++ ++ N + G A + + Sbjct: 358 NRDCNIIPSKLGNLSCLLGGARISVENF 385 >UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CF6 Length = 402 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 180/388 (46%), Gaps = 8/388 (2%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 ++ N +V + + GP+SR D++ A ++ A+ +V ++LE ++ E + N Sbjct: 10 DVRLGNRASVLYTLRREGPISRQDIAVRAGVSAATANNVVGQLLEEGVLGEAGQMPS-NG 68 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSK--LVVEESQELALKDDLPLLDRII 129 GRPA + + + + + L L DL+ + L+V+ + + + I Sbjct: 69 GRPASLTGINPGYGAVVGVDLGETAVRLELFDLALQRTLLVDTPVRAGEQGAEAIAELIA 128 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 + +++ ERL + + +PGI++ + P + PL LEQ TG+P Sbjct: 129 AGVERLLSESGVARERLLGLGVGVPGIVEDSGTSLVHAPSM-GWEGAPLAALLEQRTGLP 187 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 + + A AEA FGA+ +DV+ +I VGA ++ G L S+S E GHT Sbjct: 188 ATVSNGAKALGTAEAWFGAAGEGQDVVVCLIGTGVGASLLQQGTLYRGASASAGEWGHTT 247 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 + G C CG HGCLE +I+ ++ + + G+ ++ L AA G Sbjct: 248 IVLDGDTCRCGAHGCLEAYVGAPAIVRRWAAVSGEATAGL--GEEEVIEQLAVAAEAGGE 305 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAADILFPVISDSIRQQALPAYS 368 A +++ ++G ++ +VNL NP +I+IG + +L P++ + R++AL Sbjct: 306 QALEVLRETARYLGAGVSDLVNLVNPDRIVIGGWVGLRLGPLLLPLVREQARRRALGPPF 365 Query: 369 QHISVESTQFSNQGTMAGAA-LVKDAMY 395 + ++++ GAA ++ D + Sbjct: 366 ERLTLDLCHLGPDAVALGAATMIVDRFF 393 >UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MXJ9_SACVD Length = 413 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 85/397 (21%), Positives = 161/397 (40%), Gaps = 24/397 (6%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + P +++ N V I +SR ++ L A+++ +V ++ A LV+ Sbjct: 1 MTDIGPADQHTVRRHNCALVLDTIAASPGISRAGVAARTGLTKATVSSLVDRLVTASLVR 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E + GR L + H L + I+ + L L+ ++ E ++ + + Sbjct: 61 EDGRQHRSGPGRRGTSLSLSPHGPHGLGVEIAVDHVTTCLIGLTGEVRDEHTRRVDNRGR 120 Query: 122 L--PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +L RI +++ R + + I + +PG+++ NG V P +++ L Sbjct: 121 SVGRVLARIAREMNEALDRAHRNGIVVGGIGVAVPGLVEAANGWVRMAPNL-GWRDVDLI 179 Query: 180 EALEQHTGVP---VYIQHDISAWTMAE----ALFGASRGARDVIQVVIDHNVGAGVITDG 232 L + VP + + ++ +AE L + V + VGAG++ DG Sbjct: 180 TELHRRVAVPFGELVVGNEADLAALAELAAPRLHCEDAAPDSFVYVSGEVGVGAGIVLDG 239 Query: 233 HLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG 292 L E+GH V G RC CG GCLE +A D+IL+ A + Sbjct: 240 ELFRGTHGFGGELGHFPVQQRGPRCSCGARGCLERLAGQDAILDRAGVD----------- 288 Query: 293 QPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 VD+LC GD A G +G L+ +VNL + +++G ++ L Sbjct: 289 ---DVDTLCVRLEDGDRTAAAAARSAGRLLGTALSGVVNLLDVSTVVLGGIYARLYPWLA 345 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAAL 389 + + + + + + V + + + GAA+ Sbjct: 346 GPLHTELTARVVSTPWRSVDVRRSTVGPEAAVRGAAI 382 >UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetales RepID=Q0SE61_RHOSR Length = 400 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 98/391 (25%), Positives = 170/391 (43%), Gaps = 14/391 (3%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 G V+ LI +R ++ L L+ ++ V + + LV E E + GRP V L Sbjct: 17 GDVFALIRAGQATTRTEIGTLTGLSRTAVAARVSSLQASGLVVEREEGVSTG-GRPPVKL 75 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLPLLDRIISHIDQFFI 137 +A LS I R LA+ DL+ ++V E E + L+ I + Sbjct: 76 SFHVQAGVVLSAAIGRSRTQLAICDLAGDVIVAEDVEQEIGTSPAELMPVIAQRLIALRE 135 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDIS 197 + R I I+LPG +DTE G P +PL L T PV++ +D + Sbjct: 136 SLGETAGRTVGIGISLPGTVDTERGCSLNSPMMSGWDGVPLQPFLADVTDAPVFVDNDAN 195 Query: 198 AWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT-QVDPYGKR 256 +AE G R D++ + +GAG+++ G L + EIGHT G Sbjct: 196 VMVLAERR-GERRDFADMLLIKASTGLGAGLVSGGVLQRGALGAAGEIGHTKTAAAQGVV 254 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIIT 316 C CG+ GC+E +A +++ Q + + + + AL GD A+ +I Sbjct: 255 CRCGDVGCIEAVAGGWALVRNLQEQGREVTH---------IRDVITLALAGDAEARRMIR 305 Query: 317 GVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVEST 376 G +G +L+ +NL NP+ +++G +++A D + +++ A+ +Q + + Sbjct: 306 ESGRQIGEVLSGAINLLNPEVVIVGGDMAQAYDTFVAGLRETLYGNAIAVATQQLQILPW 365 Query: 377 QFSNQGTMAGAA-LVKDAMYNGSLLIRLLQG 406 + G+A + D + + + RLL G Sbjct: 366 THGELSGVVGSATMALDHVLSVRAVDRLLAG 396 >UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E0R0_DICTD Length = 396 Score = 306 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 86/415 (20%), Positives = 175/415 (42%), Gaps = 41/415 (9%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G Q ++ N + + +SR ++++ L+ +++T++V +++ ++ Sbjct: 4 IRTGRGGRASQQREVNKTIILNAFLRCRNISRTEIAKRFNLSKSTVTRLVNNLIDEGMII 63 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E+E GR A+ L + E + L++++ +L+ D + + E L K+ Sbjct: 64 EIEPSSEKKIGRKAIVLGLNPEYRNALAIKVGVTYTYLSKIDFAMNI-KEIKSFLTPKNP 122 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 LD + F + LE+ ++ I +PGI+D V P + K +PLG+ Sbjct: 123 QDFLDELEKATQMLF---PEGLEKTHAVGIGIPGIVDNTFKNVVVAPNL-NWKNLPLGDM 178 Query: 182 LEQHTG------VPVYIQHDISAWTMAEALFGASRGARDV--IQVVIDHNVGAGVITDGH 233 + + +PV + ++ + +AE + G D+ + V + +G G+I DG Sbjct: 179 IAERMRRAFSVEIPVKMDNEANMAVVAEGMLGTKIEYNDLNIVYVYVGEGIGTGLILDGK 238 Query: 234 LLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDS-ILELAQLRLNQSMSSMLHG 292 L ++ E GH + G +C CGN GC E AS+ I E A L + Sbjct: 239 LYRGRYNTAGEFGHMTIMKDGIKCKCGNLGCWERYASLGGDIAEKAGFDLEKET------ 292 Query: 293 QPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK-----A 347 A D A + + L ++N NP I++G PL K Sbjct: 293 -----------AEIADEKA---LKKYVDELTVGLINIINGLNPDVIILGGPLIKKDTKDV 338 Query: 348 ADILFPVISDSIRQQALPAYSQHISVESTQFSN-QGTMAGAALVKD-AMYNGSLL 400 + + + + ++++ + + + +E T F + + GA + ++ G +L Sbjct: 339 WEFIRQEVKKIVEEKSITSDAGKVRIELTSFLDYPAELVGAGIWAFWDIFEGPVL 393 >UniRef50_B2V1I0 Putative transcriptional repressor of the xylose operon n=2 Tax=Clostridium botulinum E RepID=B2V1I0_CLOBA Length = 379 Score = 306 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 167/390 (42%), Gaps = 20/390 (5%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 ++ N + + I +SR DLS L A+++ IV+E+L+ L++E I ++ Sbjct: 7 KDLRSLNKIKIIQSILYKKQISRADLSTFTSLNKATVSVIVKELLDLRLIEESTIGDSTG 66 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR + L + + + +++ I+ I + + +LS+K++ S + + + + + S Sbjct: 67 -GRKPIILTINEDIGYVIAIDINITMIDIIVTNLSNKILSSYSIKNEDNNFETIFNNLFS 125 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 I + + L I++ + G++D NG++ +P K + + LE VP+ Sbjct: 126 LIHKIQNVMPSSIYNLVGISLAVRGVVDL-NGLIKFIPQL-GWKNIDIRSKLENEFNVPI 183 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 YI++D + MAE D++ V ID + +G+I + L+ IGH + Sbjct: 184 YIENDGNLSAMAEHKL--MPNYNDMLVVDIDDVITSGIICNSQLVKGFLGFANAIGHHVI 241 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 + GK+C CG GCLE S +IL L ++ + Sbjct: 242 NCDGKQCTCGKRGCLEQYCSNLAILSHINQSLP----------VKDIEEFVNLVKEENPY 291 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 A + H+ L ++ + N + I++ S + + PV + ++ +++ Sbjct: 292 ALSTLDYFIDHLAIGLTNLIFILNCEVIVLNSYILRE----IPVAMQKLHEKIFLPITRY 347 Query: 371 ISVESTQFSNQGTMAGAA-LVKDAMYNGSL 399 + ++ + + GA + + Y L Sbjct: 348 QDLYLSKLGKKAPLIGACNICVEQFYKSIL 377 >UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus RepID=C8ZX67_ENTGA Length = 388 Score = 306 bits (785), Expect = 8e-82, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 176/384 (45%), Gaps = 18/384 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN-R 71 I++ N AV + I +SR ++S L L AS+++I+++++E V+E+ I ++ + Sbjct: 8 IREQNEAAVLKTIIDNEHISRAEVSNLTNLNKASVSQIMKKLIETDFVKEVGIGDSTSIG 67 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR + L ++ ++ I + L ++ + + ++ L + I S Sbjct: 68 GRKPIQLQFNHQSSLAITFDIGYNYVNGMLSYINGQRIAILEKQDILITKDNVFTTIDSI 127 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 + +F + L I + + GI++ EN + P+Y D++ + L L Q VY Sbjct: 128 MAEFTPKMPPTTHGLVGICLAIHGIVNQEN--ITFTPYY-DLEHIDLVSPLSQKYHTAVY 184 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 I+++ + + E F + + +++ V I +G G+I +G L + E+GH+ + Sbjct: 185 IENEANLTALGEYCFSS--DSTNLLSVSIHSGIGVGIIVNGRLQTGTHGTAGEVGHSTLF 242 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 P+G C CGN GCLE AS + + + + + D +A G+ A Sbjct: 243 PHGNLCPCGNRGCLEQYASNKVLFDTYSHYTKKEL--------VNSDIFAKAIRSGEKSA 294 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 ++ + L ++ F+P+++ I S + + P ++ ++Q+ ++Q+ Sbjct: 295 LELAQQNVEFLSIGLNNVITFFDPEEVYINSSVYRK----IPQLTKDLQQKLTSQFTQNT 350 Query: 372 SVESTQFSNQGTMAGAALVKDAMY 395 +++++ Q + G ++ + Sbjct: 351 KIKNSRLGEQAPLFGGNVLIAKNF 374 >UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Micrococcaceae RepID=A9WVF3_RENSM Length = 426 Score = 306 bits (785), Expect = 8e-82, Method: Composition-based stats. Identities = 83/400 (20%), Positives = 165/400 (41%), Gaps = 6/400 (1%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGP-VSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + ++ ++ N + I + +SR++L+ + LA +++ I R +L+ +L+ Sbjct: 17 VRRRGTNLPRMGDFNLSVILDAIRRSPEGLSRVELAGIVGLAAQTVSNICRRLLDQNLIV 76 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQ-ELALKD 120 E K G+P L + + + + + E AL DL+ +V + + Sbjct: 77 EAG-KYGSGPGKPRTILRLNPGGMYAVGVHLDPVETNYALLDLTGAVVTTRTHLTQPDAE 135 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 +D + I+ + ++ + I PG ID G + P + L E Sbjct: 136 PQQTIDAMAEEIESIISEQNIERNKIAGLGIAAPGPIDGATGAIVEPPHMPGWGTVELRE 195 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L + +PV + D++A +AE G G+ I V I +G+G++ D ++ S Sbjct: 196 RLHKAVELPVLLDKDVTAAAVAEIWAGGLSGSGSFIFVYIGTGIGSGLVLDDEVVRGSSG 255 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLR-LNQSMSSMLHGQPLTVDS 299 + E+GH DP G C CG GC++ ++I+ A + + + + + Sbjct: 256 NAGEVGHIIADPDGPDCDCGKRGCVKVTCMPENIVAEAAAAGFKAVLDNKGKSLQVQMAA 315 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADI-LFPVISDS 358 L +AAL GD A+ I+ +++ NL + ++ G P K + + Sbjct: 316 LSEAALAGDAAAQKILDLAAERFATAVSVQANLLDVDHVVFGGPFWKHFEPTFLAKLPQR 375 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNG 397 I +++ + + V T + GAA LV + + Sbjct: 376 INERSATSKVHSVEVVGTGVGSDVGAVGAACLVLEDTFGP 415 >UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillus sp. B14905 RepID=A3I7X3_9BACI Length = 383 Score = 306 bits (785), Expect = 8e-82, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 169/379 (44%), Gaps = 13/379 (3%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 Q+++ N V I Q+ P+SRI LS+ +++P +IT+IV+E+ + E + E Sbjct: 8 QMRRQNKYIVLDAIRQMAPISRIQLSKYTKMSPTTITRIVQELEAEGFILE-GVSEETAI 66 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD-LPLLDRIIS 130 GR + + +A + + + I I L + D KL+ + + ++K + + + Sbjct: 67 GRRPTLIHMREDALYTIGIEIDCFTIRLGILDFLGKLIAFQEIKCSIKHRYEEAIHLLKN 126 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 I +Q E+L I I +PG+I+ E GI+ + + +GE L V Sbjct: 127 SIATIMSEYQIAQEKLLGIGIGVPGVINNEEGIIVSSEQLK-WENCRIGEDLNGVFDCEV 185 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 + +++ +AE + + I V + VGA ++ +G + + EI H + Sbjct: 186 IVDNELKMQIIAEIGDIYTPLYSNCILVGMGTGVGASILLNGEVYRGIQNKAGEISHITI 245 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 +P+G+ C+CG GCL S ++L L +++ + Q RG+ Sbjct: 246 NPFGEMCHCGKRGCLSMYISEMTLLNRTPKNLTIQ----------SIEEVLQCVDRGEQW 295 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 A DI V ++ + +V L+ P+ +++ + + ++S+ +Q H Sbjct: 296 AVDIQQDVATYLAIAINNLVCLYEPEAVIVSGEIIEHNVTFQKLLSEKCKQYIWKELQPH 355 Query: 371 ISVESTQFSNQGTMAGAAL 389 ++ + +G + GAAL Sbjct: 356 FVLQFSNQLKEGVVKGAAL 374 >UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QHP4_CATAD Length = 395 Score = 306 bits (785), Expect = 9e-82, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 169/382 (44%), Gaps = 15/382 (3%) Query: 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK---EAGNR 71 + + AV RL+ + G +SR D++R L+ ++++ I+ ++ LV EL+ K G Sbjct: 11 ERSRLAVVRLLRERGTMSRADIARSVGLSRSTVSGIIAALVADDLVVELDAKLAPAGGGA 70 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIIS 130 GRP +++ + + + + + + +++ + + +S L + D D Sbjct: 71 GRPGAAVMLNPASGEAIGVDFGYRHVHVIIANVAHAVRIAKSVRLPVGYDPAQGFDVASD 130 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 I R+ + +++PG DT+ G V +P+ L +PV Sbjct: 131 LIRTAIDEAGTDPSRILGVGVSVPGPFDTKRG-VPSSGMPSRWAGIPVATELAARLNLPV 189 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 D +AE +GA+RG + + + + +G +++G L + EIGH V Sbjct: 190 LADGDTRLGALAERRWGAARGCDEFVYLKLHGGIGGAFVSNGQLARGINGGAGEIGHLVV 249 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 D G C CGN GCLET + ++ + +G LT+ ++ A +GD Sbjct: 250 DATGPLCRCGNRGCLETFVGLPVVMRALEPA---------YGDRLTLRNVITMAWQGDRG 300 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 ++ G GR + ++ N+ NPQ ++IG LS A ++L + ++ +LP Sbjct: 301 CIRALSDAGTMAGRAVGMLGNILNPQSVIIGGALSAAGELLMGPLREAAATASLPLAGDA 360 Query: 371 ISVESTQFSNQGTMAGA-ALVK 391 ++++ Q GA A+V Sbjct: 361 MTLQVGSLGPQACALGAVAMVL 382 >UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobacterales RepID=C5RVI1_9THEO Length = 315 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 79/309 (25%), Positives = 145/309 (46%), Gaps = 5/309 (1%) Query: 88 LSLRISRGEIFLALRDLSSKLVVEESQE-LALKDDLPLLDRIISHIDQFFIRHQKKLERL 146 + + +I L D ++ +A K ++ RI + KL L Sbjct: 6 CGVDLGGTKISTGLVDEKGNIIRSTKIPTMAEKGPEEVIKRIEQSVYDVLKEAGLKLSDL 65 Query: 147 TSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALF 206 + I PG +D + G+V P +P+ + L GV V +++D +A + E LF Sbjct: 66 KGVGIGSPGPLDAKRGVVISPPNLPGWDNVPIVDILSHKLGVKVKLENDANAAAIGEHLF 125 Query: 207 GASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLE 266 GA +G + + + + +G GVI +G L +S+ EIGH ++ G RC CGN+GC E Sbjct: 126 GAGKGIDNFVYITVSTGIGGGVIIEGKLYSGENSNAAEIGHHTINFNGPRCNCGNYGCFE 185 Query: 267 TIASVDSILELAQLRLNQSMSSMLHGQP----LTVDSLCQAALRGDLLAKDIITGVGAHV 322 AS +I AQ + +M+ + + + +AA GD AK+++ ++ Sbjct: 186 AFASGTAIARFAQEGIQNGKDTMIRDLAKDGVVKSEHVFEAAKLGDEFAKELVDNEAFYL 245 Query: 323 GRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQG 382 G ++ ++ +NP+KI IG +S D+L+ + ++I+++AL ++ V + Sbjct: 246 GVGISNIMAFYNPKKIAIGGGVSTQWDMLYDKMMETIKKKALKPNAEVCEVVRAELGENV 305 Query: 383 TMAGAALVK 391 + GAA + Sbjct: 306 GVLGAAALL 314 >UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ATI4_STRRD Length = 457 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 107/435 (24%), Positives = 176/435 (40%), Gaps = 38/435 (8%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 QP +++TN V R + G SR D++ L A+++ ++ E+LE LV+E+ I Sbjct: 16 QPAGHASLRRTNLSLVLRHLRDHGSSSRADIAEATGLHRATVSNLMAELLERRLVREVGI 75 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-----LKD 120 + AG GRP + ++ L L I+ + + DL +++VE Sbjct: 76 EHAGTVGRPRRAVALDGAHVGVLGLEINVDYVAVHGTDLGGRVLVERRVGFDAMGSGTNH 135 Query: 121 DLPLLDRIISHIDQFFIRHQKKLE----------------------RLTSIAITLPGIID 158 L L R+ R R+ I + +PG++D Sbjct: 136 SLRELGRVARQAIDELTRAGAGPSGLGPGDLAAAGASGIAAAGGGIRVAGIGVAVPGLVD 195 Query: 159 TENGIVHRMPFYEDVKEMPLGEALEQHTG---VPVYIQHDISAWTMAEALFGASRGARDV 215 +G+V P +++ L L G PV + +D + +AE G + G D+ Sbjct: 196 VGHGVVALAPNL-GWRDVSLASRLSVALGDVRAPVTVDNDANLAALAEYTSGVAAGTADM 254 Query: 216 IQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSIL 275 + + + VG G+I G LL E+GH VDP G RC CG GC ET + +++ Sbjct: 255 VYLTGEVGVGGGIIVGGRLLRGADGFSGEVGHMPVDPGGSRCGCGRSGCWETKVGLAALV 314 Query: 276 ELAQLRLNQSMSSMLHGQPLT-VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN 334 +A M + P V + + GD L + VG +G +I+VNLFN Sbjct: 315 RMATPDQAYGMGTTPVPDPEERVAEIARGLAGGDPLMLAAVAEVGRWLGLGGSILVNLFN 374 Query: 335 PQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA------ 388 P+ I++G + A L P + + + ++ GAA Sbjct: 375 PRVIVVGGYFATLARWLLPFAQAELEDLVVAGPAARCRFVASDLGFGAASLGAANVVINQ 434 Query: 389 LVKDAMYNGSLLIRL 403 L+ D GS +RL Sbjct: 435 LIDDPTAIGSPPVRL 449 >UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L9I3_RUMHA Length = 393 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 73/357 (20%), Positives = 153/357 (42%), Gaps = 17/357 (4%) Query: 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG---NR 71 Q N + I + PV+R +++ Q+ PA++T I ++ ++QE+ ++ + Sbjct: 4 QENRSTILEYIFRNAPVARSTIAKQTQITPATVTSISGNFIQEGIIQEIGAEDNAADCSP 63 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR + L + + + + + + I ++ +L V + S + D+ + D I Sbjct: 64 GRKRILLDIVPDKVYAMGIEFTSRHIRFSICNLRGDTVFQSSFSVKETDNGNITDFIAEK 123 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIID-TENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + + + + I +PG ID ++ ++ GEAL++ +P+ Sbjct: 124 AEDILKENPSFAASIVGMGIAVPGHIDAHQDKVITNSSLCPQFS----GEALKKRLNIPI 179 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 ++++ LF S + + +I + L + EIGHT V Sbjct: 180 ICENNVRCMAFGRYLFDRS-SPDTFAFFHVGAGMFCALIENSKLFQGTNYYAGEIGHTIV 238 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH-----GQPLTVDSLCQAAL 305 +P GK+C CG +GCL+T S +L+ +L + ++L LT++ + A Sbjct: 239 NPNGKKCECGKYGCLQTYCSETWLLKYCRLLYESNADTILPSLKPCADALTIEDISNAFS 298 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPL---SKAADILFPVISDSI 359 GD L + I+ ++G ++ + + NP KI + L ++ + L I+ + Sbjct: 299 LGDTLVGNYISTALKYLGITVSNLAIITNPDKIYLHGNLFSNTEIKEELMDYITKQL 355 >UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PQN5_9ACTO Length = 402 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 156/388 (40%), Gaps = 19/388 (4%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ-------ELEIKEAGNRGR 73 V I GP+ R+ ++R L+ A++TK V ++EA V E + GR Sbjct: 19 VLTRILTQGPIPRVQIARRTGLSQAAVTKAVAPLIEAGFVTDEPVAPTEGSGESQLGIGR 78 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHID 133 P L V ++ + ++++ + DL++ + L ++ RI+ Sbjct: 79 PVSPLTVLADSVSVIGVKVTPTGLIGVTTDLTAGIRTVRHSPLRDSSTETVIPRIVELAR 138 Query: 134 Q---FFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + F L I + + G +D +G+V PF +E+PL L + G PV Sbjct: 139 ELMDFLDDQANGAGPLIGIGVAVSGDVDAAHGVVRDSPFM-GWREVPLAATLTEELGAPV 197 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 + +D+ A T+AE FG A V I VG G+ +G ++ E+GH + Sbjct: 198 VVTNDVRALTVAEHWFGVGVDADSFAVVTIGSGVGCGLYLNGEVVSGAYGVSGELGHLPL 257 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 P C CG GC+ET+AS D+IL + + L + + A GD Sbjct: 258 APGELICTCGRRGCVETVASSDAILARTRETTGRP--------ELDLAGAIELAHAGDEH 309 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 A++ G +G LA MVNL P+ ++I D+ + + A A Sbjct: 310 AREAFDQAGEVIGSALAAMVNLVGPELVVIAGEGVADYDLYEQRMRRAFSAHAFGAAGDC 369 Query: 371 ISVESTQFSNQGTMAGAALVKDAMYNGS 398 + + + AA V + G Sbjct: 370 RLMLRSHTFDDWARGAAATVIRSYVRGE 397 >UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterales RepID=C6P958_CLOTS Length = 382 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 70/390 (17%), Positives = 161/390 (41%), Gaps = 22/390 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + + G IK N V +I ++ P+SRI +S++ ++ ++++ IV E+++ LV Sbjct: 1 MTQYRKGTNYLIKNINTANVLDVIKKMQPISRIKISKVLNMSKSTVSGIVDELIKEGLVS 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E + + GR + L A + + I L +L K++ + + +KD Sbjct: 61 EEGYGKTTSAGRKPIELTFNPNAKFSIGIDIESTNTIGVLTNLEGKIIKKIKRPTGVKD- 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 D + I + + +T I + PGI + E G V P + L Sbjct: 120 -EAFDNAVDIIRELLD----CQKEITGIGVGAPGITNIEKGTV-YAPGLS-WVDFNLLPK 172 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L++ ++I + ++ + E G+ + + + V I + +G+G+ +G L+ S Sbjct: 173 LKEVFDYDIFIDNSVNYAALGERWIGSCKDVNNFVLVTIGNGIGSGIYINGKLVRGHKYS 232 Query: 242 LVEIGHTQVDPY--GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 E+G+ + K+ + ++G E+ AS+ ++ S+ ++ +G+ T++ Sbjct: 233 AGEVGYMAIGRDILNKKYFYEDYGYFESKASLLGLV--------SSLKNLSNGKFNTMED 284 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L D + ++ ++++ NP+ I+I + + + I Sbjct: 285 FINGYLAKDEICIRAFNEFIENLSMGFTNIISILNPELIVIAGDVINLGINIVENLKRLI 344 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAAL 389 + + + T+ + GA+ Sbjct: 345 DKMIPF----DVKIIYTKLNEDAAAIGASA 370 >UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID=C7PXL8_CATAD Length = 390 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 87/378 (23%), Positives = 171/378 (45%), Gaps = 14/378 (3%) Query: 24 LIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE-AGNRGRPAVGLVVET 82 ++ GP+SR+DL+R ++ A++TK R L+ + EL+ + A GRP L + Sbjct: 22 MVLTEGPLSRVDLARRLGISSAAVTKAARPFLDDGYLHELDSERTAPGAGRPVSPLAITP 81 Query: 83 EAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKK 142 + + ++++ E+ + DL +++ ++L + +L + + +++ + Sbjct: 82 DREFVIGVKVTADEVIGVVADLKARIRNSAHRQLPDCEPATVLATLAALVEELLDADPEL 141 Query: 143 LERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMA 202 + + + + G +D G+V P +++ L + TG+ V +++D+ A T+A Sbjct: 142 RGKTRRMGVAVSGDVDRVRGVVRLSPLL-GWQDVDLAGPVGDATGLVVVVENDVKALTVA 200 Query: 203 EALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNH 262 E FG G D V + +G G++T G LL E+GH VD G C+CG Sbjct: 201 EHWFGDGVGTDDFTLVTVGAGIGCGIVTGGRLLSGAYGVAGEVGHVCVDASGPVCHCGAR 260 Query: 263 GCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHV 322 GC+E IA+ ++I+ A+L + LT + A G + + G + Sbjct: 261 GCVEAIAATEAIVGRARLLTGR--------DGLTFTEAAELARSGSPEVCALFSEAGTAI 312 Query: 323 GRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ-HISVESTQFSNQ 381 G + +VNL P++I++ A D+ I + A A ++ +++ F Sbjct: 313 GLAITAVVNLIGPERIVVSGEGLDAYDLFETEIRQAYATHAFGAAARCPLTIRPLPFEE- 371 Query: 382 GTMAGAALV-KDAMYNGS 398 GAA V ++ + Sbjct: 372 -WARGAAAVGIQTLFAPA 388 >UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6 Tax=Sphingobacterium spiritivorum RepID=C2FZL1_9SPHI Length = 403 Score = 305 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 168/366 (45%), Gaps = 11/366 (3%) Query: 34 IDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAW-HYLSLRI 92 +LS L + SI+KIV E+LE L+ E + + GR A+ + + + L++ I Sbjct: 27 AELSGLTNKSIPSISKIVNELLEDKLLIEDGLAPSTG-GRRAIHYALNAKLNCYILTVAI 85 Query: 93 SRGEIFLALRDLSSKLVVE-ESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAI 151 + + + DL +K V + E L I+S I++ +H + + I + Sbjct: 86 DQHYTSVIVYDLHNKEVTPVHTIENHLDHPEEAFSNIVSLINELLTKHHLSADNILGIGV 145 Query: 152 TLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRG 211 ++PG +D +G ++D + + + E+ +P +I++D +A +AE FG ++ Sbjct: 146 SMPGFVDNVSGT---NGSFKDFQLFNIKKEFERVFAIPTFIENDSTAIAIAEQNFGKAKE 202 Query: 212 ARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASV 271 + + + VG G+I D L S E H + K C CG GCLE AS+ Sbjct: 203 ISHALIINVGWGVGLGIIVDNKLFRGFSGYAGEFSHIPLSKSKKMCSCGKTGCLEVEASL 262 Query: 272 DSILELAQLRLNQSMSSMLHGQPL-----TVDSLCQAALRGDLLAKDIITGVGAHVGRIL 326 + + + RL S++ + L AAL GD LA + +G+ + Sbjct: 263 SAAVAHLEERLATGEKSVIQYEDSQNQLQKAQLLINAALGGDQLAISALNKSAYMLGKGI 322 Query: 327 AIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAG 386 A ++++ NPQKI+I ++A IL P I +I + +P S +E + N + Sbjct: 323 ATLIHIMNPQKIIISGRGAEAGKILMPQIQTAIHEFCIPKISNKTVLEISDMKNAQLIGT 382 Query: 387 AALVKD 392 A++V + Sbjct: 383 ASIVFE 388 >UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces RepID=C9ZFY3_STRSW Length = 406 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 162/386 (41%), Gaps = 19/386 (4%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 P + +++ N V ++ GP+SR ++ L A+++ +V E++ + L++EL + Sbjct: 18 PDNQQGMRRRNLARVLHAVNAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEELGPE 77 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--DLPL 124 G GRP L + + I + + DL ++ ++ + P+ Sbjct: 78 RPGRVGRPGSALALSGRGPAGIGAEIGVDHLAVCAVDLRGEVRARAVRQGTNRGRSPEPV 137 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMP--LGEAL 182 +D + + Q + + +A+ +PG++ ++ V R P D + Sbjct: 138 VDDLTRLVRQVVAEAESEGLWPAGLAVAVPGLVASDARTVVRAPNL-DWHDTDLGALLPG 196 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 G+PV + ++ + +AE G D + V + +G V+ DG LL Sbjct: 197 GLPGGLPVTVDNEANFGGLAELWLGDG-TPPDFLHVSAEIGIGGAVVVDGRLLRGTRGFA 255 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 E+GH V P G C CG GCLE A +++L A L + V+ L + Sbjct: 256 GELGHVPVRPEGPACACGGRGCLEQYAGEEAVLRAAGLEPAEHR----------VEFLAE 305 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A GD + G G +G L VNL +P+ +++G L+ A L P + + ++ Sbjct: 306 RAAAGDKEVHRALRGAGTALGIALTGAVNLLDPETVVLGGALAALAPWLLPSLERELARR 365 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAA 388 +V ++ + G + GAA Sbjct: 366 T---AGPACAVTVSRLGSDGPLLGAA 388 >UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1Z3_9CLOT Length = 388 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 81/402 (20%), Positives = 169/402 (42%), Gaps = 22/402 (5%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 ++ +K+ N VY I V+ D++ + L+ ++T +V+EM +LV + Sbjct: 5 NLSDVKKANRQVVYECIWSHKAVTMTDIAYMTHLSRPTVTSLVQEMTADNLVVKSGYG-T 63 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 N GR V A + + + + ++ +A+ +L + + + D + R+ Sbjct: 64 SNGGRNPVLYHANAGAAYAMGIDLEFPKVRMAISNLECENICFSVRVYPRDSDKDQMIRL 123 Query: 129 ISH-IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 + +D RL + + +PG+ID + E + +P+G+ ++++ G Sbjct: 124 LKQQMDDLIQDSGIDRSRLLGVGMGIPGVIDYKQNHSVLFERIEGWENVPIGDIIQRYVG 183 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 PVYI +D++ + AE ++++ +VI +G + TDG L+ + IGH Sbjct: 184 KPVYICNDVNLLSWAERKAAHLEDVQNMLYIVIRSGIGMAIWTDGSLMQGEMGNSGRIGH 243 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 VD G C CG+ GCL S +++ + + + L A G Sbjct: 244 MTVDKNGLECKCGSRGCLGLYTSEKAMMRIYSELTGKEIKQ--------AGDLVPLAESG 295 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAAD--ILFPVISDSIRQQALP 365 D A + G ++G + + NLF+ +++ +S + D + ++ + + Sbjct: 296 DKAALQVFETCGRYLGIGIVNVANLFDISEVV----VSASFDVSYILRNAQYALDVRKMN 351 Query: 366 AYSQHISVESTQFSNQG-TMAGAALVKDAMYNGSLLIRLLQG 406 + + + + G + G LV D + + LL+G Sbjct: 352 TIRREVKIREGLLAESGFGLGGCLLVLDKEH-----MSLLEG 388 >UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B8FTN1_DESHD Length = 406 Score = 304 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 177/390 (45%), Gaps = 10/390 (2%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 A + LI G +++ L+++A L ++ +++ + +A L+ E E+ GR V Sbjct: 19 AKKILGLILHKGGMTKSQLAKVAGLKLTTLNRMMLPLEKADLILPTETGESTG-GRKPVI 77 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFF 136 V ++ + + ISR + L +L +L+ ++ ++ L+RI+ I + Sbjct: 78 YDVNPRRYYVIGIDISRLYSQVVLTNLKMELIEKDRFDMDRNSSPQATLNRILDWIGRVM 137 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYE--DVKEMPLGEALEQHTGVPVYIQH 194 + + + I G +D ++GI+ +E + +PL +E+ TG+PV I + Sbjct: 138 EKRGHGY--VIGVGIGTVGPLDRQSGIILNPENFEAQGWENIPLKAIVEERTGLPVIIDN 195 Query: 195 DISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYG 254 + +AE +G+ +G + VI + + GVI+ G L+ + + H +D G Sbjct: 196 GANGAVLAETRYGSGKGMKSVIYLNCGVGIRTGVISSGTLVRTINDADDTFAHMVIDVNG 255 Query: 255 KRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH--GQPLTVDSLCQAALRGDLLAK 312 K C+CGN GC+E +S+ +I+E + Q H +P++ LC+ A D +A+ Sbjct: 256 KPCHCGNQGCVERYSSIYAIMEALAEEMPQGKDRRNHKADRPVSYLELCREAEENDTIAR 315 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 ++ +G LA + L NP +++ PL + + + V ++ +++ H+ Sbjct: 316 QVLQNAAVRMGTGLANFIQLLNPGLVVLSGPLILHSQLFYEVCVEAAKRRRPWDKGGHLV 375 Query: 373 VES-TQFSNQGTMAG-AALVKDAMYNGSLL 400 F G AALV + L Sbjct: 376 FSRGGAFEENAISIGAAALVVEHYLEPETL 405 >UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q8E8_9ENTR Length = 377 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 169/369 (45%), Gaps = 12/369 (3%) Query: 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRP 74 + + RL+ +SR +++ +L+ A+I+ +++EML A LV+E I EA +GRP Sbjct: 3 NAHQQQIIRLLIASHGMSRTAIAQKMKLSKAAISTLIKEMLNAGLVEES-IPEATGQGRP 61 Query: 75 AVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQ 134 +V L + ++ ++L + I L L D+ + + L L D L I I Sbjct: 62 SVLLKMRADSAYFLGASLLGEAITLVLIDMHGRTLATRVLPLNL-DPHQLTRAIADAIPS 120 Query: 135 FFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQH 194 + ++L + +TL G +D + + K++PL + L+ TG+ V +++ Sbjct: 121 LVTQQGISPDQLIGLGVTLSGFVDEHQAVCVQSALL-GWKDVPLADMLKAQTGLEVSLEN 179 Query: 195 DISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYG 254 D A ++E +FG ++ R+ + +G+ G L EI H ++P G Sbjct: 180 DAKALAVSEKIFGLAKKVRNFTLISHSDGIGSAHFFQGQLHRGAHGGAGEIAHCTIEPGG 239 Query: 255 KRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDI 314 + C CG GCL+T+AS+ +I E + + + T+ L A++G A I Sbjct: 240 RPCRCGKRGCLDTLASLTAIREHMRDKAIAAQ---------TLPELETQAIKGSSAAIAI 290 Query: 315 ITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVE 374 + G +G +A +V + +P+ I+I +L V+ +I LP+ + Sbjct: 291 LHQAGNALGLAIANIVQMNDPELIVIAHHPGAFDGLLKTVVMQAIDANVLPSIMGKTPIS 350 Query: 375 STQFSNQGT 383 + +++ Sbjct: 351 TIVLNDESW 359 >UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BCC4_9GAMM Length = 394 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 176/385 (45%), Gaps = 6/385 (1%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE--L 63 + +QI+ N + + GP++R+DL + +L+PA++T I E+ + + E Sbjct: 2 KKTDTEQIRLANKKQIIHYLRVHGPIARVDLGQALKLSPATVTAITSELQQEARLIEHPA 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK--DD 121 ++ RGRP V + + +A+H L L++S E+ + L + ++ E +L + + Sbjct: 62 TTEKTNTRGRPRVLIDLAPDAFHVLGLKLSINELKMHLGNHKGQVSDEMVIDLDTRALSE 121 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L D I S + +F +R ++ I + G+++ NG + P V+++PL Sbjct: 122 EGLFDAIASAVRRFNASVPAH-KRPKALGIAVQGVVNGLNGEIIWSPALA-VRKVPLKHE 179 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LEQ +PV I +D + TMA + D +++ + +G G++ +G L + Sbjct: 180 LEQRIQLPVTIANDANCLTMAIRHQRRYQSLTDFAVIMLGYGIGMGMVINGELYLGHHGA 239 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E GH++ P G +C CG GC+E ++ A S + LH ++ L Sbjct: 240 AAEFGHSKYYPEGAQCLCGKRGCIEAYVGDYALYRDASALFPLSWDNSLHPTEDSMQVLV 299 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A +D+ G +G ++ ++ L + +KI+I P S+A ++ + ++ Sbjct: 300 NKAESDSKELRDLFQRAGRVLGHGISNLIALLSLEKIIISGPGSRAYHLMEAGLMTNLED 359 Query: 362 QALPAYSQHISVESTQFSNQGTMAG 386 + ++E + T+ G Sbjct: 360 SLVSDLIAETTIEHAAWDEDMTIKG 384 >UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O82844_TETHA Length = 386 Score = 303 bits (778), Expect = 5e-81, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 171/378 (45%), Gaps = 20/378 (5%) Query: 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN-RGRPAVGL 78 + + I +SR L+++ L +S++ I + +L+ ++ E ++ + N GR + L Sbjct: 13 LILKNIIDYQEISRAKLTKITNLTKSSVSDITKTLLDKDIIYESKVGNSTNSGGRRPIYL 72 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIR 138 + + + I R I L ++ L+ E+S + ++D + I Q Sbjct: 73 KFNENSALVIGIEIGRNYIKGGLSYINGSLIREKSYTQITINRYNIIDTLSQIIQQLCSD 132 Query: 139 HQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISA 198 K + + + + G I + +P Y D+ E+ L E L HT +PV++ ++ +A Sbjct: 133 LPKSSYGIIGVGVAIHGSI--YKNKITFVP-YSDMDEIELQEKLSSHTHLPVFLINEANA 189 Query: 199 WTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCY 258 + E F + + +I + I +GAG+I G L + + EIGHT + P G+ C Sbjct: 190 SALGEYTFTS--NSESLISISIQDGIGAGIIEKGILYSGKNGNAGEIGHTTLYPDGRLCP 247 Query: 259 CGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGV 318 CGNHGCLE AS +IL +L + LH Q + D ++ Sbjct: 248 CGNHGCLEQYAS-TTILYKEISKLKEVEYCDLH-QVIN-------YWHNDEEVIQLLKNN 298 Query: 319 GAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQF 378 + + +V++++P+ ++I + L + L VI + ++ ++++ +++T Sbjct: 299 AKLISIGVNNIVSMYDPETVVINNELYREIPDLINVIEKHLTRR----NNRNVFIKNTSL 354 Query: 379 SNQGTMAGA-ALVKDAMY 395 ++ T+ G +LV Sbjct: 355 EDKTTLYGCLSLVIRQFL 372 >UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=B5XVY7_KLEP3 Length = 402 Score = 303 bits (776), Expect = 9e-81, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 162/386 (41%), Gaps = 21/386 (5%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 +++ + N + + G ++R +L+RL L P +++ IV EM + L+ + + A Sbjct: 7 NLEHARVHNRRVIIEAVRLHGELTRAELARLTALTPQTVSNIVAEMEQMDLLTSHQPRRA 66 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 RG+PAV + + + + + + + + L DL+ ++ + R+ Sbjct: 67 SGRGQPAVPVSLNPASAWSIGIHLDHQTLIVVLVDLAGEVHFRRLILVQKPQPGATFARL 126 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 +D+ R+ + + +PG E + + + L + +G+ Sbjct: 127 AEVLDEIRALPTLDWSRVLGMGVVMPGPFGVEGISSTGPTTLNGWEGVDVAAELGRLSGL 186 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PV +++D + + E G +R + + I +GAG+ TDGH+ + + E+GH Sbjct: 187 PVTLENDATVAAIGERFHGVARQLNSFVYLYIGTGLGAGIFTDGHVYTGHAHNAGEVGHI 246 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 V P G+ CYCGN GCLE S+ + E L L L+VD A D Sbjct: 247 VVAPNGRPCYCGNEGCLERYVSLQAAYEFCGLD----PYRALPEDLLSVD-----AALFD 297 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGS----PLSKAADILFPVISDSIRQQAL 364 I+ + + + ++ +F+ + +++G PL + P + S+R + L Sbjct: 298 QWITSILAP----LRQAINLLECVFDAETVVVGGMMPAPLLEKVLARLPPLYQSVRGRYL 353 Query: 365 PAYSQHISVESTQFSNQGTMAGAALV 390 PA V+ GAA + Sbjct: 354 PAQ----RVKMGMTGTDTAALGAAAL 375 >UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EN99_9FIRM Length = 450 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 83/401 (20%), Positives = 174/401 (43%), Gaps = 19/401 (4%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE-LEIKE 67 +++ +K +N A+ +L++ G +SR D++ L PA++T I ++L A ++ E E++E Sbjct: 56 NLENVKVSNRSAILKLLNDHGAMSRKDIALELGLTPATVTLICTQLLSAGILVEKGEMEE 115 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLD 126 GR V + + + + LS+ I E +++ DL +L+ + + L Sbjct: 116 EKRAGRKKVSIDINYQYKYVLSVSIEAPETCISISDLKGRLIAGRKLKTDGALEPQVFLK 175 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE-MPLGEALEQH 185 ++ E + I+LPG + + G+ Y E +P+GE ++ + Sbjct: 176 QVADEGKSLMWEQGISKESVLGAGISLPGPVKRDTGVSLHA--YRIWNEAVPVGEYMKMY 233 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 +PV +++++ A+ E ++G + +++ + VG+ +I + + +S EI Sbjct: 234 LDLPVVVENNVKAFAEGELIYGTGKNQENLLFIKWGPGVGSAIIIQNKIYDSQNSKTAEI 293 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTVDS 299 GH V+P G C CG GCLET + ++ E + + L+ + + V + Sbjct: 294 GHYIVEPGGLPCRCGRRGCLETHVATHAMAERVRRACTKESMPGLYAFVDGDVEKIEVRN 353 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + Q D + II + + R + + L P K++I + + I Sbjct: 354 MEQWIEIEDPGLQKIIDDIVERLARTVVNTITLLAPDKVIIYGFMFE-----MDHIQKRF 408 Query: 360 RQQA--LPAYSQHISVESTQFSNQGTMAG-AALVKDAMYNG 397 + + + S++ G A+V + M+ G Sbjct: 409 LDFCTYYDSLYDGDYILKSGLSDRIGYIGPLAIVVNEMFLG 449 >UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DT25_9BACL Length = 389 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 167/399 (41%), Gaps = 17/399 (4%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 +++ N + + + +SR DL R L+ +I++IV ++L ++EL Sbjct: 3 MKASPPLVRRLNERRIMNALREHKRLSRADLERQLNLSAPTISRIVEKLLRDGWIRELYP 62 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 E+ GR + L + E L + + RG + ++ ++L + + Sbjct: 63 GESQTAGRKPILLDINPEGSGALGVELGRGCTRIVYTNMLAELRASRTISRSATGP---- 118 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY-EDVKEMPLGEALEQ 184 + + + F + ERL + + PG +V P + + + LE+ Sbjct: 119 NDLAEMVKSFLVEESLTEERLIGLGVAAPGACFPNRDMVVPAPDLGTEWSKSEAAQQLER 178 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 GVPV++ +D +A +AE FG ++ A+ V V+ D +GAG+ G + + E Sbjct: 179 ELGVPVHLANDANAAVLAETWFGTAQHAQHVAFVLADVGLGAGLAVAGSIYEGAARKAGE 238 Query: 245 IGHTQVDPYGK-RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 HT V+ RC G+ GC+E+ AS +I + T++ + + Sbjct: 239 FSHTIVNFESDVRCDDGHAGCVESQASGKAIFARLKAVREVHAHE-------TIEYVVKR 291 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A G +I ++ +A +V F+P+ +++G + A+ I + + + Sbjct: 292 ACSGVEPDASVIDRAFRYLAAGIANLVRAFDPEVVVLGGRMVLASQIAYERLRGYVHDCL 351 Query: 364 LPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLI 401 P +H + +F GAA LV +Y+ + L+ Sbjct: 352 RP---EHKLITCARFGLDAVAMGAASLVLQTVYDHTQLV 387 >UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5EFJ1_9FIRM Length = 383 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 166/388 (42%), Gaps = 19/388 (4%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 I+ N + + I +SR +S L A+++ IV+E + LV+E + ++ Sbjct: 7 KDIRSANRLTIIKHILNKKQISRARISEETGLNKATVSTIVKEWMSLKLVEETTMGDSSG 66 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR + L + +A + +++ I + L L DL+++++ +S + + + +I Sbjct: 67 -GRRPIILTLAAKAGYCIAIDIGARRLGLILTDLNNEIISRQSIPIEKQAFSHVYQQIYI 125 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 ID+ L I++ + GIID + G++ +P + + + LEQ VPV Sbjct: 126 AIDRMIREIPPCPYGLIGISLAVRGIIDLD-GVIRFIPKLQ-WHNIDIKSLLEQRYHVPV 183 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 YI +D + E+ V+ + + G+I++G L+ +GH + Sbjct: 184 YIDNDGNLAASMESRLHPQYEELTVLCLT--DVISCGMISNGRLIRGYLGFANAVGHHTI 241 Query: 251 DP-YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 + K+C CG +GC E S +L+ A L L + +D + + + Sbjct: 242 NIQETKQCSCGKYGCWEQYCSDQYLLDEANLHLETPLE--------DIDGFIELVRKQNP 293 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 LA I+ ++ L+ ++ N + I++ S L ++ L P I I LP Sbjct: 294 LALGILDTYIKNLAIGLSNIIFFVNCEMIILNSHLIQSLPYLMPEIMKDI---ILPITHT 350 Query: 370 HISVESTQFSNQGTMAGAAL-VKDAMYN 396 + + N+ + GA+L + + Sbjct: 351 Q-EILISTLGNEAPILGASLKAIEEFFE 377 >UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepID=B7GQ98_BIFLI Length = 404 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 84/358 (23%), Positives = 161/358 (44%), Gaps = 5/358 (1%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + ++N + + + G SR +++ +L PA+ITKI ++EA +++E E Sbjct: 10 SQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMIEETGDLEG 69 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 R ++GL ++T + + ++ +R + + + DL + E+ + ++ Sbjct: 70 SKN-RRSIGLKLDTTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPTVYDN---TINDT 125 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 I I Q + + +I + +PG G + + +++ + V Sbjct: 126 IVTIHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGRTAVVSSMQGWRKINFIDEFATAFRV 185 Query: 189 PVYIQHDISAWTMAEALFGASRGAR-DVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 PV+I+ D A +A LF S A ++ ++ VG GVI +G L++ + EIGH Sbjct: 186 PVFIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAATEIGH 245 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 +D G+ C CGN GCLE S +I ++ + +L A G Sbjct: 246 ISIDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARALFAKAGDG 305 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 D A I+ V +VG + N +NP+ I+IG +++A IL + ++ ++A+P Sbjct: 306 DEAAIAIVREVAQYVGYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAERAIP 363 >UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDL5_9FIRM Length = 380 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 81/376 (21%), Positives = 160/376 (42%), Gaps = 14/376 (3%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 + +I VSR +++R+ ++P S T+IV + E LV+++ + GR AV L Sbjct: 2 KMILDIIRDSREVSRSEIARMTGMSPTSATRIVGSLEECGLVRDMAAV-SNGVGRKAVML 60 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--DLPLLDRIISHIDQFF 136 VE A++ + L IS + L + + ++V + +++ + Sbjct: 61 DVEENAFYCIGLDISETNLKLCILNFGGQIVARGAAPAPGDSFQPEEVVEIFYRMYQRLA 120 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 I+ + +E++ +I G +D++ G V +P+G+ +E G+P Y+ +D+ Sbjct: 121 IQAKIPMEKVAAIGAGAVGTVDSKTGEVIFGDLIR-WSHVPIGQMIEARFGLPTYVDNDV 179 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP-YGK 255 + + +GA DV+ + VG VI G L+ +S EIGHT VD G+ Sbjct: 180 KCAIIGDCSTPPIKGADDVVLLSFGCGVGGAVIHRGRLVRGSINSAGEIGHTIVDYTDGR 239 Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDII 315 C CG GC + D I++ A S ++ + A R + A+ ++ Sbjct: 240 LCSCGRRGCAAAYLTKDQIIQQAAKSCPGISS---------LEEIMAAWERREPWAEALL 290 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 + ++ ++ NP+ +++G L + LF ++ + P + Sbjct: 291 DRISTYMAITVSNAACFLNPRNMILGGKLMNESPFLFDLVLEKYSAMMYPPLRGATTFIR 350 Query: 376 TQFSNQGTMAGAALVK 391 + T G A++ Sbjct: 351 SPLGTDATCVGGAMIA 366 >UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WTI5_RENSM Length = 403 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 84/376 (22%), Positives = 153/376 (40%), Gaps = 19/376 (5%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 A+ LI SR DL+R LAP++IT+ + E++EA L+ E GR L Sbjct: 30 SAILSLIASNPASSRADLARKLNLAPSTITQRINELIEAGLIAESGAGGHTG-GRRPTLL 88 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIR 138 + +A L+ + ++ ++S L+ + + + IIS + I Sbjct: 89 SLVADAGCILAADLGAAHAWVGRLNMSCALLDSSLISIDISAGPEAVLPIISEAMRSLIE 148 Query: 139 HQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISA 198 L + + LPG +D G+V + P+ + L + + +D + Sbjct: 149 DDTPP--LRGVGLALPGPVDFTRGMVDSPSRMRGWHQYPVRDWLSREFDTAASVDNDANM 206 Query: 199 WTMAEALFGASRGAR-----DVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 + E + D + + +G G+I G L S + +I H QV Sbjct: 207 MALGEYSLRQRQNPDTKNRTDTLFLKAGAAIGCGLILQGQLYRGASGTSGDIAHVQVSAA 266 Query: 254 GK-RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G+ C CG+ GCLET+AS +I+ + + + + AL GD Sbjct: 267 GELPCACGHRGCLETVASGTAIVSQLIEAGVEVKD---------LADVIRFALNGDTQTT 317 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 + G +G+ L+ +VN NP +++G LS+ + I + P ++++ Sbjct: 318 TRLRAAGRLLGQTLSTVVNFINPSLVVLGGGLSQV-EPYVAAIRSQLYAGCHPLAAKNLL 376 Query: 373 VESTQFSNQGTMAGAA 388 +E +Q +Q + GA Sbjct: 377 IEPSQAGSQAGLLGAG 392 >UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q516_CATAD Length = 404 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 166/384 (43%), Gaps = 9/384 (2%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 +++ + + I VSR +L+RLA ++ A+++ +V +++ LV E ++ N Sbjct: 11 DLRRRSRATLLSCIYLGRAVSRPELARLAGMSSAAVSNVVSDLISDGLVAEAGSVDS-NG 69 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK--DDLPLLDRII 129 GRP L + + + I I + L D + + + E+ + D ++ ++ Sbjct: 70 GRPRTMLAARPGFGYAVGVDIGETHIHVVLFDWTLSTLATSTHEIRVGRLDPDVVVRLVV 129 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGII-DTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 S + ERL I I +PG + + E G+VH +PLG+AL Sbjct: 130 SGVRSLLDSTGVPHERLLGIGIGVPGAVQEGERGVVHAPTL--GWSGVPLGDALRAELDA 187 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 P+ I + AEA GA R AR + + VGA + L +GSSS E GH Sbjct: 188 PILIDNCARTLGQAEAWRGAGRDARRAVVALWGVGVGAAIAEGSSLAESGSSSTSEWGHA 247 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG- 307 ++ G+ C CG+HGCLE +IL+ A L G + L A G Sbjct: 248 VIEARGRACRCGSHGCLEAYVGATAILD-AYLAHPAGKPFTSDGTEAKMAELAARATTGA 306 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK-AADILFPVISDSIRQQALPA 366 D A ++G + ++N+ NP ++++ + + +L P I ++ R+ ALP Sbjct: 307 DEAATATFDEAAEYLGIGVGNLINMINPDQVILAGWVGEQLGPLLMPAIREAARRHALPY 366 Query: 367 YSQHISVESTQFSNQGTMAGAALV 390 ++ + GAA + Sbjct: 367 LFDQTRIDVGELGPGAVALGAATL 390 >UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacterium RepID=C6JR29_FUSVA Length = 388 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 176/382 (46%), Gaps = 17/382 (4%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 ++++ N +R + ++ S++++S+ ++ ++TKI+ L L+ E G Sbjct: 9 EKLRNENRT--FRFLVEVREFSKLEISQYLNISIPTVTKILERFLTNKLIYETGT-NNGK 65 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR A+ +A+ + +++ I + L +L K++ + + + + +I+ Sbjct: 66 LGRKAIKYQFNPDAYFSIGIKVEMNHISMVLINLDGKILKQTVVKEEFINSENFVFLVIN 125 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + +F KK E + I I LPGI++ EN ++ + + + E +E+ G+P+ Sbjct: 126 ELKKFLWEFDKK-EFIKGIGIVLPGIVNPENNMIKLGGNFS-LLNQDMKE-IEEEFGLPI 182 Query: 191 YIQHDISAWTMAEALFGAS--RGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 +++++ +A + E + S + ++++ V ID +G+G+I + L + EIGH Sbjct: 183 FLENEANAGAIGEYIVNHSGLQTKKNILFVSIDTGIGSGIIVENQLYRGKGNKSGEIGHI 242 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 + P G +C CG+ GCLE S ++++ + + + + Q G+ Sbjct: 243 PIIPNGDKCACGSEGCLEQYCSNLALMKEFEKE--------FQCEIKEYEDIFQEKFIGN 294 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 K I+ + + + + N KI+IG +S + P++ + I + + Sbjct: 295 EKGKKILERYTWILALGIKTALMMLNSDKIIIGGKISDYKEYFEPMLKEIIFSNNIFSND 354 Query: 369 QHISVESTQFSNQGTMAGAALV 390 I +E + S+ + GAA + Sbjct: 355 ADI-LEFSSLSDNANLLGAAFI 375 >UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI Length = 373 Score = 301 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 171/372 (45%), Gaps = 12/372 (3%) Query: 34 IDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEA-WHYLSLRI 92 DLS+L + +T IV ++++ V E + + GR A+ ++ E +++ + Sbjct: 5 TDLSKLTHKSLPLVTGIVNDLVQDGYVVEHGLAPSTG-GRRALTFLLNKEKQKFIVAVSV 63 Query: 93 SRGEIFLALRDLSSKLVVE-ESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAI 151 + + + D+ + + VE L L D+ + IS I + + E++ I I Sbjct: 64 DQLITTVVIYDMLNNIQVEPAKIYLNLADEQTSMALFISFITGYIAKSGISEEQILGIGI 123 Query: 152 TLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRG 211 +PG+I+ + G+ F++ E L L PVYI +D S +AE FG R Sbjct: 124 GMPGVINAKLGV--NHTFFKIKNEGNLKNYLSDALKFPVYIDNDSSLIALAELKFGEGRN 181 Query: 212 ARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASV 271 +DV+ V I +G G+I +G + S E H + K C CG GCLE S+ Sbjct: 182 MKDVMVVNIGWGIGLGMIINGDIFRGHSGYAGEFSHIPLSQSNKLCSCGKRGCLEVDTSL 241 Query: 272 DSILELAQLRLNQSMSSM-----LHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRIL 326 ++E A+ + +SS L L + AA GD LA I++ +G+ L Sbjct: 242 LVLVERAKAEIAAGISSRLEQLFLDDSKLPGEHFLIAARDGDPLAVSILSDAAFLIGKGL 301 Query: 327 AIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAG 386 + ++++ NP+ I++G + A I I +I + +P + H + + + + + G Sbjct: 302 STLIHILNPELIVLGGRGATAGKIFMAPIQHAINEFCIPRLADHTKISVSASAERSELLG 361 Query: 387 AAL--VKDAMYN 396 AA+ V++ +N Sbjct: 362 AAILVVENCQFN 373 >UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C9NFC9_9ACTO Length = 418 Score = 301 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 82/377 (21%), Positives = 154/377 (40%), Gaps = 23/377 (6%) Query: 7 PGHIDQIKQTNAGAVYRLID---QLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 D +++ N V R + + G +R +S L A+++ +V ++L++ V E Sbjct: 11 KADKDTVRRHNLSLVLRAVRDEGEAGEATRAGVSARVGLTRAAVSSLVEQLLDSGFVTES 70 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 +G GRP L V L + I+ + + + DL+ V +++ L + P Sbjct: 71 GKTFSGQAGRPGTALKVARTGPAGLGVEINIDYVSVCVVDLAGTGRVRQTEHLDNRGAPP 130 Query: 124 --LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +L R + +++ A+ LPG++ G V + P ++ + Sbjct: 131 GEVLARAAGIAARTLDSAREQDLCPVGTALALPGLV--SGGSVRQAPNL-GWNQVAAEDL 187 Query: 182 LEQHTG--------VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGH 233 + +PV +++ + +AE FG R + + + VG ++ DG Sbjct: 188 FGEALAGLRPGTAALPVRSENEANLAALAELWFGGLGTVRSFLYLTGEIGVGGALVLDGE 247 Query: 234 LLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQ 293 LL EIGH VDP G C CG+ GCLE A ++L A + ++ + Sbjct: 248 LLRGAHGFAGEIGHVVVDPAGPECRCGSRGCLEQYAGQSALLRAAGIGEGAGGAAGVM-- 305 Query: 294 PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFP 353 L + A GD +A + G +G++L+ VNLF+P +++G L P Sbjct: 306 -----ELERRAQAGDPVALAAVADAGRMLGQVLSGAVNLFDPDAVVLGGIYRGLMPWLAP 360 Query: 354 VISDSIRQQALPAYSQH 370 + + + + Sbjct: 361 PADEELTGRVVSGLWSR 377 >UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XND9_MEIRU Length = 397 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 154/395 (38%), Gaps = 23/395 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 +A P IK+ N + + + GP SR L+R L ++++ +V+EMLE L+ Sbjct: 1 MARTTPLDQQAIKRLNRRLILEALRRHGPQSRAALARAVGLTKSTVSTLVQEMLEEGLLD 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E + GRP L L + + L L DL++ + + + Sbjct: 61 E-GSRHKPGLGRPGTALEFSPRHTLALGVELGVENTQLVLLDLNNTI--HDKWDWVESPH 117 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 PL +R+ +Q R RL I + +PG+++ + P E Sbjct: 118 TPLAERLTKLAEQVQSRL-SDPTRLLGIGLAVPGVVNGRR--LLYAPG-PGWHNEQPAEM 173 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE VP + +D +A + E +G + ++ V++ +G G++ DG + + Sbjct: 174 LEALLKVPTLVDNDANAAALGETFWGEQQSP--LVYVLMTTGLGTGLVVDGQVYRGRLGA 231 Query: 242 LVEIGHT-QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 E+GH P+ + G +E S+ +++E Q + + Sbjct: 232 AGELGHWLTGQPHSRS----RAGDVEGTLSLRAMVERYQAA---------SNRKEGFWGI 278 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 Q A D A + + +GR + + F+P +++G ++A L + +I Sbjct: 279 LQRAEHQDPYALQALQNLAYELGRFVVNLCVAFDPAVVVLGGAGAEAWKWLEAPLRQTIH 338 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 A I V+ + F + GAA + + Sbjct: 339 NLAFIPEHAEIPVKPSAFGHLAPAMGAAALVLQRF 373 >UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VV97_9CLOT Length = 406 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 70/370 (18%), Positives = 165/370 (44%), Gaps = 8/370 (2%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 + +I +SR D+ ++ + +++ I+ +++ + +V E + +E GR V Sbjct: 15 RNKILNIIRSNENISRYDVKKMTMYSMSTVLDIIDDLIASGMVYEADCEEP-RVGRKPVW 73 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFF 136 L + E +++ + + A+ D + +++ + ++L + +L +I HI Sbjct: 74 LRLNPEGGYFIGAEFNAFHLHCAMLDFTGEIIYQSEEDLLPDQGKDAILALLIRHIHAAI 133 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 + K ++ +I++ +PG ++ + I +D + +P+ + LE +P Y+ +++ Sbjct: 134 DAVKGKPGQIFAISVGIPGYLNEDKSIALSHFRLKDWENVPVKKILEDEFHLPCYLDNNV 193 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 + A + RD + V I V + + HL+ + E+GH +V P+G Sbjct: 194 NVMAFAYKWLRYNGDCRDFLFVSIRTGVRIVPVINNHLILSRGGLSGELGHVKVAPHGTL 253 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLL 310 C CG GCL + S SIL + + +T++ C++A + Sbjct: 254 CSCGGIGCLNSEISDLSILGKLKAGFEFGRFPEIMEMAGGDPDKVTLEMFCESAAQEHSD 313 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 + ++ + +G L + VN+ P+ +++ L++ + F IS + + + Q Sbjct: 314 SVKLMLDLANILGEALGMAVNILAPEVVVLSGQLAQLGEPFFQEISKVLERNVVQEIYQG 373 Query: 371 ISVESTQFSN 380 + V ++ F+ Sbjct: 374 LKVTASVFNE 383 >UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AFQ9_9ACTN Length = 405 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 171/391 (43%), Gaps = 15/391 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + P + ++Q N R + G SR ++R + L+ AS+T ++ E++ LV E Sbjct: 9 TSAPATVSDVRQRNRSQALRSVILTGETSRAAIARESGLSVASVTNLISELISEGLVMEA 68 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 A + GRP L ++L + + + L DLS + E + + + Sbjct: 69 GSV-ASSGGRPVTLLAPNPSGAYFLGADVGERGVAVELFDLSMTRIDREFRGGREGEPIE 127 Query: 124 LLDR-IISHIDQFFIRHQKKLERLTSIAITLPGII--DTENGIVHRMPFYEDVKEMPLGE 180 + + ++ R+ +R+ I + LPGI+ D E V +P+ + Sbjct: 128 AIAADLDEALNALRERNPAAWDRMIGIGLGLPGIVESDAEGRQVLYAQSL-GWSPIPVAD 186 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 + +PV+ ++ MAE GA+RG + + V++ VG ++++G L +S Sbjct: 187 LVSH--DIPVFAENGAKTQAMAELWDGAARGVNEALVVLLGRGVGLAIVSNGELARGLNS 244 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 S E GH ++ G+ C CG GC+E D+ILEL + S ++ Sbjct: 245 SAGEWGHVKIVRNGRLCRCGGRGCVEAYLGADAILELWREAGGVFDGSGWG-------AV 297 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLS-KAADILFPVISDSI 359 Q D +A ++ + +G L +VNL NP++++IG + + + L + ++ Sbjct: 298 GQLLESHDPVAVGVVDELIETLGSALGGLVNLTNPERVIIGGWVGLRLMEALASRMEEAT 357 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALV 390 R +AL S+ + F GAA++ Sbjct: 358 RAEALARPGGQFSLHACSFGGDTVALGAAIM 388 >UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIY1_9ACTO Length = 423 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 89/385 (23%), Positives = 159/385 (41%), Gaps = 8/385 (2%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 D + T AG + L+ +SR++L+ L+ L A+IT +VR +++ LV E+ +E Sbjct: 25 DDGRVTTAGRMLDLLRTRSTLSRVELAELSGLTQATITHVVRRLIDGGLVLEVG-REQQG 83 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQE-LALKDDLPLLDRII 129 RG+P L + +AW+ + +++ R + + D + + V + + Sbjct: 84 RGQPRRLLELNADAWYAVGVQVDRTTTTIVVIDFAGRRVATAGFRGTGTSGPDAAVSALA 143 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 HID ER+ + + G D E G++ D + PL L G+P Sbjct: 144 DHIDDLLHSTAVPRERVIGVGLVTHGPQDRERGMLLMAHPTPDWLQYPLTSTLSNRLGLP 203 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V +++D +A E G + + +G G++ +G+ +S+ VEIGH Sbjct: 204 VLLENDATAAATGEQWSGTVP-TDTFGLIYLGSGLGGGIVANGNAYRGRASNAVEIGHVG 262 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILE--LAQLRLNQSMSSMLHGQP--LTVDSLCQAAL 305 + C CGN GC E A +++ LA L + H + + + +A Sbjct: 263 LMGASAPCVCGNCGCAEAEAGPHTVVAQVLAHPDLAGRLGIKAHEEDTLADFERVARAWQ 322 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAADILFPVISDSIRQQAL 364 D A I+ +GR MVNLF+ +++ P L A + + + + AL Sbjct: 323 ADDPDATAILQRSARWIGRAAVTMVNLFDLDTVVLAGPALISAGPLYQHFVEAELTRHAL 382 Query: 365 PAYSQHISVESTQFSNQGTMAGAAL 389 V + + G AL Sbjct: 383 SRALSRPRVLLSANVDTAAAIGGAL 407 >UniRef50_C0W4H3 ROK family protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W4H3_9ACTO Length = 412 Score = 300 bits (770), Expect = 5e-80, Method: Composition-based stats. Identities = 90/408 (22%), Positives = 158/408 (38%), Gaps = 14/408 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M EN + + N V I ++R D+ R L+P +++ +VR +L+ LV Sbjct: 1 MTRENN--SPPRQAEVNRSLVLDTIRYAERLTRADIGRQTHLSPQTVSNVVRYLLKHDLV 58 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK- 119 E RGRP + + + + + + + DL L+ E + L Sbjct: 59 LEAGTVAPEGRGRPGTTVQLNPHGRFAIGVHVDPSALGVVAVDLRGDLLYEHYEPLPFPN 118 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 D L I + ++ R + ER+ I I PG I E+G + R P ++ PL Sbjct: 119 DPTQSLTEIAAQTERAIARTGQPRERMLGIGIATPGPI--EDGRMTRPPLLPHWQDFPLR 176 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGA---SRGARDVIQVVIDHNVGAGVITDGHLLH 236 L Q T + D++A A + + I + DG + Sbjct: 177 SRLAQLTHTATLLDKDVNAAAQAHLWRHPTALGAHPNSFMFLYIGAGSALTAVLDGQVWR 236 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQ---LRLNQSMSSMLHGQ 293 S + E GH + G C CG GCL ++E A+ L L S S+ G+ Sbjct: 237 GRSGNAGEAGHFSGNSTGLLCPCGQRGCLGISLGEKEMIEQARDLGLDLPGSTSTATPGE 296 Query: 294 PLTV-DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAAD-IL 351 T+ L + A GD +A+++++G + + R+ ++ L ++IG P + Sbjct: 297 KSTIFARLLRLADDGDPIAQEVLSGAASVIVRVTTVLSELLELDTLIIGGPRWPVMQKQM 356 Query: 352 FPVISDSIRQQALPAYSQHISVESTQFS-NQGTMAGAALVKDAMYNGS 398 P++ + Q+ ++ I S+ A LV Y+ Sbjct: 357 EPLLDQPLSQRIFYGETRPIQTISSPLGARDAATGAACLVLSETYSAD 404 >UniRef50_C3QC45 ROK family transcriptional repressor protein n=19 Tax=Bacteria RepID=C3QC45_9BACE Length = 402 Score = 300 bits (770), Expect = 5e-80, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 181/383 (47%), Gaps = 12/383 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 + I G + DLS+ L+ ++TK + EM + + + E GR Sbjct: 20 KRIITHYIY-NGSSTIPDLSKELDLSVPTVTKFIGEMCDDGYINDYGKLETSG-GRHPNL 77 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLV-VEESQELALKDDLPLLDRIISHIDQFF 136 + E+ ++L + I R + + L + +V ++ + ++ + ++ + HI F Sbjct: 78 YGLNPESGYFLGVDIKRFAVNIGLINFKGDMVELKMNIPYKFENSIEGMNELCKHILNFI 137 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 + E++ +I + + G ++ E+G +E E PL + L + G V I +D Sbjct: 138 KKLTINKEKILNINVNVSGRVNPESGYSFSQFNFE---ERPLADVLSEKLGYKVTIDNDT 194 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 A T E + G +G +D+I V + VG G+I DG + S E GH Sbjct: 195 RAMTYGEYMQGCVKGEKDIIFVNVSWGVGIGIIIDGKIYTGKSGFSGEFGHMSAYDNEII 254 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLL 310 C+CG GCLET AS ++ + R+ SS+L P+T+D + A + DLL Sbjct: 255 CHCGKKGCLETEASGSALHRILLERIQSGESSILSTRIATEENPITLDEIIAAVNKEDLL 314 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 +I+ +G +G+ +A ++N+FNP+ ++IG LS D + I ++R+ +L ++ Sbjct: 315 CIEIVEEIGQKLGKQIAGLINIFNPELVIIGGTLSLTGDYITQPIKTAVRKYSLNLVNKD 374 Query: 371 ISVESTQFSNQGTMAGAALVKDA 393 ++ +++ ++ + GA ++ + Sbjct: 375 SAIITSKLKDKAGIVGACMLARS 397 >UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGB0_EUBR3 Length = 412 Score = 300 bits (770), Expect = 5e-80, Method: Composition-based stats. Identities = 85/407 (20%), Positives = 176/407 (43%), Gaps = 27/407 (6%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE-LEIKE 67 +D +K N + +++ + G +SR D++ L PA++T + +M+EAH++ E E+KE Sbjct: 7 SLDSVKNNNKSQILKILQKNGAMSRKDIANQIGLTPAAVTMLCNDMMEAHMILEKGEMKE 66 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLD 126 GR V + + + + +S+ I + + + ++ ++VE + L+ Sbjct: 67 QKRAGRKKVLVDINYDFKYIVSVNIEAVDTSITVTNIRGNVLVETKVHTRTDIEPQLFLE 126 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE-MPLGEALEQH 185 + I + KL + I I +PGI+D NGI Y + + E LE+ Sbjct: 127 ELAKEIKLQLWEKELKLSDILGIGICVPGIVDRNNGISIHA--YGIWNNQVKIREILEKQ 184 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 PV +++++ A+ AE L+G + +++ + VG+ ++ D L + EI Sbjct: 185 IQCPVILENNVKAFAEAEMLYGVGKYGNNIVFIKWGPGVGSAIVVDNKLYEGNQHNAAEI 244 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH ++P G +C CG GCLET S+ ++ + + ++ + +L+ + +L L Sbjct: 245 GHYIIEPDGLKCRCGRQGCLETRVSMFALCDRIKEIYSKENTPVLYEETAGDKNLITREL 304 Query: 306 -------RG-------DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADIL 351 G D +I+ G + R+ ++ + P ++ + + I Sbjct: 305 LTSWVENEGNGYITRMDKTISEILVGAIERMARVAVNVLTILAPDCTIVFGSMFENTSIY 364 Query: 352 FPVISDSIRQQALPAYSQHIS--VESTQFSNQ-GTMAGAALVKDAMY 395 I Q + + + S++ + G AL+ + Sbjct: 365 KLFI-----QYCTKYDENYTDKLISRSHLSDKMAYIGGTALIASTYF 406 >UniRef50_UPI0001B509AF ROK family protein n=2 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B509AF Length = 408 Score = 300 bits (769), Expect = 7e-80, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 169/394 (42%), Gaps = 13/394 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 V L+ SR +++R + L ++ K V ++ +++ELE E+ RGRP Sbjct: 21 LRKVLDLVVSGEATSRAEIARRSGLVRTTVGKQVDHLVARGILEELESSES-VRGRPPRV 79 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLPLLDRIISHIDQFF 136 L + A + +A+ DL+ +++ +E+ + + +L+ + + Sbjct: 80 LTLSPRAGTVAVADVDTLASQVAIADLTGRVLAQETVGVRIATGPETVLETVTERLMALL 139 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 + + R+ ++ + LP +D + G R P+ + L + P + +D Sbjct: 140 AQCGRDSGRVRAVVMGLPAPVDFQRGCTVRPTGMPGWGGYPVADELRKRFRCPALVDNDA 199 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVI-TDGHLLHAGSSSLVEIGHTQVDPYG- 254 + + EA G + ++ + I VGAG++ +G L + +IGH + G Sbjct: 200 NLMALGEA--GQEQDGTPLVCIKISAGVGAGIVTAEGELYRGADGAAGDIGHIRAVGGGG 257 Query: 255 -KRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKD 313 C CGN GCL +AS ++L + S V L + + A Sbjct: 258 DVLCSCGNDGCLSALASRPAVLRSLGI-----PESTDEDPLHGVRVLAERVADNEPNAVR 312 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 + G VG I A++V++FNP+ +++G PLS+ D L + + Q+ L + +++ Sbjct: 313 ALRQAGTDVGEIAAMLVSMFNPRTLVVGGPLSELRDDLLSGVRAVVYQRGLALATSKMTI 372 Query: 374 ESTQFSNQGTM-AGAALVKDAMYNGSLLIRLLQG 406 + + + G AL +++ + R++ G Sbjct: 373 TTPRLGESAGIHGGIALATREVFSAQGVARMMVG 406 >UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2A3_9CLOT Length = 397 Score = 300 bits (768), Expect = 8e-80, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 162/388 (41%), Gaps = 15/388 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE--IKEAGNRGRPA 75 + I GP+SRID+S + PA++++I M++ +L+ E+ I E GR Sbjct: 11 RFKILDKIYAKGPISRIDISNETGITPATVSEITGNMIQENLIHEIGEVIPEENKSGRKK 70 Query: 76 VGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR--IISHID 133 + L + Y+ +S I L D K+ E++ +L + +L I+ + Sbjct: 71 ILLGISPNHSFYIGTELSPKYISFCLTDNIGKIYKEKTIQLDNSNLEEILSEEFYINKLS 130 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQ 193 F I I LPG D N + + K + L + +P+Y + Sbjct: 131 SFIDSCTN--YNPKGIGIALPGHFDEVNKSIITNNSF--WKNFDIT-ILLERFDLPIYFE 185 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 +++ T++E LF + + I + + + +G L + + EIGH V P Sbjct: 186 NNVKCMTLSERLFSFNGNDDNFIFFHVGRGMFCSYMYNGELYAKDNFLVGEIGHIVVHPN 245 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALRGD 308 G+ C CG GCL+T S I++ +Q+ + S ++ L +T++++ +A GD Sbjct: 246 GELCECGKRGCLQTYGSEAWIIKKSQILFDNSETTYLKQLVSERNKITIETILKAYRLGD 305 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 I+ ++ + + + + KI+I L + + + L + + Sbjct: 306 EGIIKILNSAINYLSITINNLSMMIDSSKIIIHGELFNEDLLKNLLEELLKQNINLLSKN 365 Query: 369 QHISVESTQFSN-QGTMAGAALVKDAMY 395 + +++N G +A AAL + Sbjct: 366 IKQDILLKEYNNYNGALAAAALCVSKLL 393 >UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KQ9_SYMTH Length = 391 Score = 300 bits (768), Expect = 9e-80, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 171/391 (43%), Gaps = 12/391 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 +P + +KQ N AV I GP+SR++L+ L L+ ++T IVR++L+ LV+E + Sbjct: 3 RPANARLMKQLNRQAVLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEKGL 62 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 ++ GRP + L+ A L++ + ++ L DLS L VE L+ D Sbjct: 63 GQSSG-GRPPIMLLFNPAARFVLAVCLEGERLWGGLADLSGALQVEAEGVLS-PDPHDPA 120 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 + + R + RL ++A+ +PG I G V P +E+PL + L Q Sbjct: 121 RSVCDFLQGLIDRSGVEASRLAAVAVGVPG-IAHTEGTVSHAPSLGWWQEVPLRDRLRQC 179 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 GVPV +++D++ + E GA G ++ + + +GAG++ DG+L ++ E+ Sbjct: 180 FGVPVVVENDVNLMALGEYFQGAGVGVANLALMHVSEGIGAGILIDGNLFRGARNAAGEV 239 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 G+ + P R + G E S +I + Q L ++ G+P V L + A Sbjct: 240 GYLPLGPLSPR-RPQDFGLFELHYSSRAIRQQLQAALPEAPGD--DGRP--VRRLRELAE 294 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 G A+ + H +A + + NP+ +L+ ++ + Sbjct: 295 AGLPWARSLFGDALRHWAHAVASITCILNPELVLLAGDAVDCGREGLSEVNRIVAD---- 350 Query: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMYN 396 + ++ + GA + ++ + Sbjct: 351 LVPDPPEIRFAVLGSRAALTGAVAMALSLAD 381 >UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1T2_ERYRH Length = 392 Score = 300 bits (768), Expect = 9e-80, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 167/391 (42%), Gaps = 18/391 (4%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI-KEA 68 + + K + L+ GP+SRID+S+ + PA+++ + + ++ ++ E+ + Sbjct: 3 LSKAKTKQTALILDLLYSKGPLSRIDISKSLHITPATVSDLTQHLINDKIICEIGEDTDN 62 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 GR + L + +YL + + LAL D +++ EE+ L+ D + D + Sbjct: 63 TRVGRRKILLGLLPNHSYYLGVELFEHSFTLALSDNLNEICFEEAFTLSKSDHVRH-DLL 121 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 + I+ F +H +TSI I +PG D + + L + L++H Sbjct: 122 VKTINDFLKKHSDTA--VTSIGIAIPGHYDKTSAHILT--NNHSWANFSL-DYLKKHLKY 176 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PVY +++++A + E LFG + + + + + + G L + + EIGH Sbjct: 177 PVYFENNVNAMAIRERLFGHDKTDANFLFLHFRRGIFCSYVYQGDLYARNNYFVGEIGHL 236 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQA 303 V+P+G++C CG GCL+T AS +L A L N S ++ L L++D L QA Sbjct: 237 VVNPFGEQCECGKIGCLQTYASQTWLLHKASLLFNSSANTYLKQLVNEEHELSMDILLQA 296 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLS---KAADILFPVISDSIR 360 GD ++ + L ++ + I + L + + +L I + Sbjct: 297 YHLGDSAVIQLLENAINFLAIALNNIIVTLDTDIIYLHGQLFDDEQLSTLLLNKIREHDS 356 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVK 391 + Q I E +S A + Sbjct: 357 EFI---SRQTIQKEIKPYSKANGARAACALA 384 >UniRef50_C6LD35 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LD35_9FIRM Length = 459 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 104/421 (24%), Positives = 178/421 (42%), Gaps = 29/421 (6%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M ++ KQ N G + +LI +RI+LS+ L ++T IV E ++ LV Sbjct: 42 MARMTGKNNLTS-KQFNRGLLLKLIATQNCRTRIELSKATGLTKMTVTNIVSEFIQQGLV 100 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E E + GR + L + +A + L I R I L LS + + ES Sbjct: 101 AEREEVQTEVCGRNPILLEISGKAPKVIGLLIFRDRIEAVLCTLSMQKLASESIHFDSLT 160 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L S ID+ + + + I + G +D G++ P + ++ +P+ E Sbjct: 161 KEQLYAHCFSVIDRLLEKE----KNIFGIGVAAIGPVDIWKGVILNPPRFYGIQNVPVRE 216 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 ALE+ +PV+ HD ++ +AE LFG R +D + V I + +G+G+++ G + H+ Sbjct: 217 ALEKRYALPVFFDHDNNSAALAELLFGIGRNVQDFLFVGISNGIGSGIVSGGRVYHSHRG 276 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 EIGH +D G C CGN GCLE A+ +LE + ++ S P S Sbjct: 277 LPPEIGHISIDRRGPLCACGNRGCLELYANTHIVLEKLRAAKGRAFSGERCAGPGDALSA 336 Query: 301 -CQAALRGDLLA----------------------KDIITGVGAHVGRILAIMVNLFNPQK 337 A G A ++I + V L VN+ +P+ Sbjct: 337 NFCRAEEGASFADFCREEGASFADFCRAPQTAETEEIFEEMLQDVSAALVTSVNILHPEM 396 Query: 338 ILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAAL-VKDAMYN 396 I++G + L + + + ++ + + + V+ F + + GAA D M+ Sbjct: 397 IVLGHDCIDWDERLVGRLEELVNERKVVHDQRPLPVKKAYFGKEAQLIGAACNAVDQMFR 456 Query: 397 G 397 G Sbjct: 457 G 457 >UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID=C5C1Z1_BEUC1 Length = 403 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 161/377 (42%), Gaps = 15/377 (3%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVV 80 + +L+ +R DL + ++I V +L LV + + A GRP Sbjct: 26 LLQLLRDGRARTRADLVAETGQSRSTIATRVDALLATGLVASVGSR-ASTGGRPPTAFAF 84 Query: 81 ETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIISHIDQFFIRH 139 + + L + + LA+ DL+ ++ E ++ + + D +L + + R Sbjct: 85 DPTSRVVLGVDLGAAHGRLAVTDLAGSILAEHAEPVRISDAPEKVLGWVARTGHELLDRA 144 Query: 140 QKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAW 199 + L + + LPG ++ G P + + L H P+ + +D++ Sbjct: 145 GRPSTDLAGLGLGLPGPVEHSTGRPVDPPIMPGWHGVDVPGILGAHFAAPILVDNDVNLM 204 Query: 200 TMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR--C 257 + E G D++ V + +GAG+I DG L + ++GH V P G+ C Sbjct: 205 ALGEHAMGFP-DVDDLLFVKVATGIGAGIIADGELRRGAQGAAGDLGHMAV-PGGEPRLC 262 Query: 258 YCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITG 317 CGN GC+E +AS ++I + + +S D + GD A + Sbjct: 263 TCGNTGCVEALASGNAIATKLREAGIDATTS---------DDVVALVRAGDPTATATLRQ 313 Query: 318 VGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ 377 G +G +LA V+L NP ++IG LS A + L I + + ++LP +QH+ + T+ Sbjct: 314 AGRELGAVLAGTVSLLNPSVVVIGGSLSAAGEQLLAGIREVVYARSLPLATQHLQIVGTR 373 Query: 378 FSNQGTMAGAALVKDAM 394 + Q + GA+++ Sbjct: 374 TARQAAVLGASVLASDF 390 >UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TGR1_9MICO Length = 421 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 90/407 (22%), Positives = 180/407 (44%), Gaps = 11/407 (2%) Query: 3 AENQPGHIDQ--IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 + G +DQ ++ N G + R + G SR L+ L+ A+ + ++ ++ E LV Sbjct: 15 RTPRSGRLDQAQMRAANMGLILRQLQLHGGRSRAGLATETGLSKATTSSLIADLAERGLV 74 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 +E EI AG+ GRP + + ++ L L IS + + DL+ ++ E + + + Sbjct: 75 REGEIHRAGSVGRPGLTVNLDGRRVAGLGLEISIDYVAVTAVDLTGNVIRESITPMDVPE 134 Query: 121 --DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 +LDR+ + + + + PG+ID + GIV P + + L Sbjct: 135 LAVEVVLDRVAGIAQRMLESLRSAGHIVVGFTVAPPGVIDYDAGIVRFAPNL-GWRSVAL 193 Query: 179 GEALEQHTG--VP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLL 235 L + G P +++++D +AE A +D++ + + VGAG+I +G L+ Sbjct: 194 AAGLSERIGPECPEIHLENDAKLAAVAEYGAYADSEVQDLVYLSGEVGVGAGIIAEGRLV 253 Query: 236 HAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL 295 S E+GH + P C CG GC E + + L LA + + Sbjct: 254 RGWSGFSGEVGHLALGPSELECSCGRRGCWELVVGLHHFLRLA-APVGDVVHDSRRSMDD 312 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 ++ L + A GD + + + + R L+++V++ NP++I++G + + L + Sbjct: 313 RLEILRERAASGDERTLEALAAIARDLIRGLSVLVDVLNPRRIVLGGYFAPFGEQLLAPV 372 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAAL-VKDAMYNGSLLI 401 ++ ++ + A S+ + V + G AL +A++ + Sbjct: 373 KSALDERRMDAGSE-VVVAVSALGLSAASRGGALAALEAVFEDPTTV 418 >UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y7Z7_9BURK Length = 413 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 73/393 (18%), Positives = 154/393 (39%), Gaps = 42/393 (10%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 G +K+ N + R + +SR L+ + L ++++ +VRE+++ V E Sbjct: 22 MKTTGDQQLVKRINRSVLLRQLRAQPGLSRAQLATESGLTKSTVSLLVRELIDEGWVTET 81 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 ++ ++GRP+ L ++T + + + ++ + + L+ +++ + L Sbjct: 82 DVTTTQSQGRPSTPLHIDTRSRGLIGVEVAVEALRVVGVSLTGQVLCAAEEALNGTKPED 141 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEM----PLG 179 + + I + + + Q++ + + LPG D G++ P + + P+ Sbjct: 142 VCRQAARLIARTYKQLQQRNIEALGVGVGLPGAFDEATGMLRFAPNL-GWRNVDLMPPIA 200 Query: 180 EALEQH--TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHA 237 EAL + + V++Q++ ++E F +I V VGAG++ + L Sbjct: 201 EALAKAKLPELKVHLQNEADTAALSEYEFSDGDAKDSLIFVTCGVGVGAGIVLNDRLFTG 260 Query: 238 GSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTV 297 EIGH + G C CG GC ET ++ +L Sbjct: 261 VQGMAGEIGHNILQIDGPLCSCGRRGCAETFFGARTLAKLP------------------- 301 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 D T G ++G +L + FNP +++G P + D Sbjct: 302 ----------DP------TQGGHYLGVVLQNLWTTFNPSTLVVGGPSCDTYPGIVKAAQD 345 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 ++++ A A +V ++ + GAA + Sbjct: 346 TLQRYADAAGMAAPTVRPARYGLLASAVGAAAL 378 >UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3G4_9BACL Length = 304 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 137/311 (44%), Gaps = 10/311 (3%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL-DRIISHIDQFFIRHQKKLE 144 + + + I + + L ++ + S ++ DR+ + I Sbjct: 3 YAIGIDIGGTKTAIGLIGTDGEVRTKVSLPTDQTVGPEVMVDRMAAAIQDILTAQGIAES 62 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 L I + PG ++T+ G + P P+ ++L+++ +P+ +++D +A +AE Sbjct: 63 ELLGIGVGAPGPLNTKEGKIAEPPNLRGWWNFPIVDSLKRYFSLPIRLENDATAAALAEK 122 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 GA++ A + + I +GAG+ + G L+ S + ++GH VDP C CG GC Sbjct: 123 WLGAAKDAEHFVFITISTGIGAGIYSHGKLITGASGNAGDVGHIVVDPSVGTCVCGQKGC 182 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGR 324 E +AS ++ A S L G+ ++ A G + ++++ V ++G Sbjct: 183 WEFVASGTAVARQA---------SELLGREVSSKEAFDLAAAGQPVIQELVAKVFENIGV 233 Query: 325 ILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTM 384 ++N F+P+K++IG +S+ D LF + D + + AL + + + Sbjct: 234 GCVTLINTFDPEKLVIGGGVSQVGDPLFNAVRDYVSKYALNPSGRQTPIVPAALHQDAGL 293 Query: 385 AGAALVKDAMY 395 GAA + Y Sbjct: 294 IGAAALIHIPY 304 >UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q736_CATAD Length = 402 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 163/394 (41%), Gaps = 11/394 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + Q D ++ N + + +R DL+R + L+ A+I+ +V +++ LV Sbjct: 1 MTSRAQKTTRD-LRWHNRADLLTRLYLGEATNRNDLARASGLSAATISNVVSDLIGDGLV 59 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E + + GRP L V H + + I EI + L D + V EE++ + + Sbjct: 60 GENGSQSSAG-GRPRSLLRVLPAFGHVVGIDIGETEIRVGLFDWTLHPVAEEARPVDIPR 118 Query: 121 DLP--LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 P + D+++S I R ++ L + I +PG G V P +PL Sbjct: 119 VPPQQVADQVLSEIAAVTARAGIAVDDLLGVGIGVPG----AGGSVIHAPTL-GWSAVPL 173 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 L G I + A AEA GA+RGA + +++ G + Sbjct: 174 AGLLRDRLGFTPDIDNGAMALGQAEAWRGAARGAERAVALLLGTGAGGALSLAAGPGGRA 233 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 S +E GHT VD G C CG GCLET ++IL + + + + Sbjct: 234 RSFTMEWGHTVVDLEGPHCRCGARGCLETYIGAEAILARYAATPGSTPLAEDGVEAQLSE 293 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA--ADILFPVIS 356 + +A+ + A +++ ++G ++ ++NL P +++I L P + Sbjct: 294 LVARASQHHESAALEVLDATATYLGVGISNLINLVAPDRVIISGWAGALLCDAALLPAVR 353 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 +R+ ALP + +E + T GAA + Sbjct: 354 RVVRRHALPYLQEFTRIEPGELGPSATALGAATL 387 >UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5VW31_BRUO2 Length = 402 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 155/375 (41%), Gaps = 29/375 (7%) Query: 16 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR---- 71 + G V +++ GP SR +L+R L+ ++T + ++L+ + E + + Sbjct: 3 IHLGMVLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMP 62 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIIS 130 GRP V + + A + + I + +A+ DL+++LV + + A D L L + Sbjct: 63 GRPPVSVRLVPSAHYVAGVYIGAEAVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTAD 122 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + L L I + +PG +D + + +++ +A+E +P Sbjct: 123 VLRNLVQAKGISLGSLVGIGMGVPGPVDQVRRR-NLLSINTGWRDVAFADAMEAELNIPT 181 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 ++H+++A +AEA +G +G V+ V + ++ DG G VE+GH Q+ Sbjct: 182 VVEHNVTAMALAEAHYGIGQGCPAVLYVYLGTG----LVVDGMPFRPGGHGAVELGHIQI 237 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 DP G C CGN GCLET S + E ++++ L Sbjct: 238 DPQGALCACGNRGCLETFVSERVLRERGAGSAEPLLAALARNPTLH-------------- 283 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 V H LA VNL P I++G ++A + + + + + LP Sbjct: 284 -----DEVAGHFTTALANAVNLLTPDLIVLGGHFAEAPEAFYARLRCDLPPRVLPHMRDV 338 Query: 371 ISVESTQFSNQGTMA 385 + +E F N Sbjct: 339 LRIERGGFGNNAGAV 353 >UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD Length = 330 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 85/316 (26%), Positives = 140/316 (44%), Gaps = 9/316 (2%) Query: 85 WHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR-IISHIDQFFIRHQKKL 143 Y+ + + I +A + ++V + +D L+ I +D+ H K Sbjct: 4 RWYVGVDVGGTTIKMAFLTTAGEIVDKWEIPTNKQDGGALITTNIADALDKRLSGHHKSK 63 Query: 144 ERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAE 203 L I + PG I+ + G ++ ++ PL + LE+ T +PV + +D + + E Sbjct: 64 SDLIGIGLGAPGFIEMDTGFIYHAVNI-GWRDFPLKDKLEEETKLPVIVDNDANIAALGE 122 Query: 204 ALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP-YGKRCYCGNH 262 GA GA++++ + + VG G++ +G++LH + EIGH V P G C CG Sbjct: 123 MWKGAGDGAKNMLLITLGTGVGGGIVANGNILHGVNGMAGEIGHITVIPEGGAPCNCGKT 182 Query: 263 GCLETIASVDSILELAQLRLNQSMSSMLHGQ-----PLTVDSLCQAALRGDLLAKDIITG 317 GCLET+AS I +A + + S L LT + AA D A ++ Sbjct: 183 GCLETVASATGIARIATEGVTEHKESQLALDYDKHGVLTAKDVFSAADASDAFALSVVDH 242 Query: 318 VGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ 377 + ++G +A + N NP+KI+IG +SKA D L I ALP + Sbjct: 243 IAYYLGFAIANLANALNPEKIVIGGGVSKAGDTLLKPIKQHFEAYALPRVADGAEFRIAT 302 Query: 378 FSNQGTMAGAA-LVKD 392 N + G LVK Sbjct: 303 LGNDAGVIGGGWLVKQ 318 >UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acnes RepID=D1Y8Z8_PROAC Length = 403 Score = 297 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 90/394 (22%), Positives = 164/394 (41%), Gaps = 14/394 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 ++ N + + P+SR +LSR L+ ASIT + E+ LV+E G G Sbjct: 16 MRTINLALLLGALRSE-PISRAELSRRTHLSKASITNLAAELAARGLVREGSPDRNGTVG 74 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL--PLLDRIIS 130 RP L +E + L I+ + + + DL ++ + +Q + +LD + Sbjct: 75 RPGTMLTLEGARVCGVGLEINAEYLAVCVVDLCGTVLYDRAQPFDVASLPISDVLDEVAG 134 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + + + + ++ PG+I G VH +++PL L Q + Sbjct: 135 IMRDTLEQLHSARRHVAQVMVSAPGVIKQPAGTVHLASNL-GWRDVPLRSQLLQRLDADI 193 Query: 191 --YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 +++D +AE RD++ + D VGAG+I G L+ S E+GH Sbjct: 194 SLQVENDAKLAAVAEYRRYEDSDVRDLVYLSGDIGVGAGIIAAGQLMRGWSGFSGEVGHL 253 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 +DP C+CG GC E + L RL+ L Q + A RGD Sbjct: 254 HLDPRNLPCHCGRTGCWEARVGLPEFLAHTGDRLDAQPIDRLLIQ------IQDRATRGD 307 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 + + + + L++++++ NP+ +++G S D L P I+ + + L + Sbjct: 308 QQVLNALDNLATSLAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTARRLDPGA 367 Query: 369 QHISVESTQFSNQGTMAGAAL-VKDAMYNGSLLI 401 + + Q + GAAL D+++ L + Sbjct: 368 GAL-LAGAQLGMVSSAHGAALTALDSVFANPLSV 400 >UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178996E Length = 317 Score = 297 bits (761), Expect = 5e-79, Method: Composition-based stats. Identities = 75/317 (23%), Positives = 143/317 (45%), Gaps = 10/317 (3%) Query: 81 ETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFFIRH 139 + + + + +I AL D +L+ E E A + ++ RI + I H Sbjct: 6 NKQQEFVVGVDLGGTKIAAALFDSEGQLLNREQMETAGARTAEEVVARITNMIRSVSGGH 65 Query: 140 QKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAW 199 L + + PG +++ GIV + +PL +E+ V + +D +A Sbjct: 66 P-----LRGVGMASPGTVNSREGIVIHGTNLPEWTNVPLKAWMERDLNTEVQVLNDANAA 120 Query: 200 TMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYC 259 E + GA RG+ +++ V + +G+G++ DG L +S E+GH +DP G +C C Sbjct: 121 AWGEYVRGAGRGSTNMVYVTLSTGIGSGIVLDGKLFLGSNSFAGELGHHIIDPSGPQCNC 180 Query: 260 GNHGCLETIASVDSILELAQLRLNQSMSSM----LHGQPLTVDSLCQAALRGDLLAKDII 315 G+HGC E AS +I A R+ S + + + +A D +A ++I Sbjct: 181 GSHGCWEVFASGTAIGLAASQRMLTQTSVISELAAADGGVNARHVFEAKRLHDPVAVEVI 240 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 ++ L +++ FNP +I++G +S+A ++LFP + + + +P+Y + Sbjct: 241 DRAVYYMALGLVNVIHSFNPDRIVVGGGVSRAGELLFPQLREMTDKLVMPSYLGTYEIVP 300 Query: 376 TQFSNQGTMAGAALVKD 392 + + GAA + Sbjct: 301 AGLRDDVGLVGAAALFQ 317 >UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGH9_NAKMY Length = 386 Score = 297 bits (761), Expect = 6e-79, Method: Composition-based stats. Identities = 101/399 (25%), Positives = 185/399 (46%), Gaps = 22/399 (5%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + + + + A+ RL+ GP SR DL+R +L+PAS+T+IVR + ++ LV E E Sbjct: 3 ERTESFPALSEGSRAALVRLL-VHGPASRADLARRLRLSPASLTRIVRTLEDSGLVVESE 61 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 GRP+ + V +A H + +++ GEI L D+ S ++ + L P Sbjct: 62 TTVPQRMGRPSQAMEVNVDAVHLVGIKLLAGEINLVRTDMRSTVLGHRTIPLQTVPLDPA 121 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 +DRI I + ++ I+L G +D + +V PF +++PL + + Sbjct: 122 IDRITEAI---LAEVAVDPA-VGAVGISLAGPVDPSSDMVTHSPFL-GWEDVPLARLVSE 176 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 TG+P I++D+ A T AE FGA+ GA D + V I +G GV+ L+ + + Sbjct: 177 RTGLPTVIENDVRALTAAEHWFGAAAGATDFVLVTIGAGIGCGVVIGDRLVDGNTGGAGQ 236 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGH + P G C G+ GC + + +++ A + LH LT L A Sbjct: 237 IGHLPITPSGPLCERGHRGCARSYLASSAMVGQASMA--------LHRPDLTYAELVSLA 288 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD---SIRQ 361 +G+ +A ++ G +G ++ ++ + P K++I ++ V+ + + Sbjct: 289 HQGERVASRVVRDAGYALGTLIGLVTAITAPSKVIISGEGVTMVPLVMDVVQERASEVEH 348 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALV-KDAMYNGSL 399 A+P + +E +F GAA++ + ++ Sbjct: 349 WAVP----DVPIEIAEFGFVEWARGAAVIALQQLLEAAI 383 >UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7J1_9RHOB Length = 402 Score = 296 bits (760), Expect = 7e-79, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 163/385 (42%), Gaps = 6/385 (1%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 +Q+++ N V + + ++R+DL RL L+ A++T I ++ + L+ E+E + Sbjct: 4 KASREQVRRQNRFVVLSTLRRHTTLARVDLGRLTGLSLAAVTSITADLKDRGLIAEVEEQ 63 Query: 67 ---EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--D 121 +A RGRP L + + H +++++S + LAL D + E + D Sbjct: 64 PNPDANTRGRPRTYLRLRDDVAHVITVKLSVDRVSLALVDYTGHQHAEAKFMVESSDMGG 123 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + + I + + I + GI+ NG + P + +++ L Sbjct: 124 DAFIALLAREIKALLKTEPLRARSVMEITVATQGIVGKHNGSIIWSPTIAE-RQVELTAK 182 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L + G+ + +D + A A + + + + V ID VG G+ L + + Sbjct: 183 LSKTLGITCTLYNDTNMIAEALHRQDAEKYSGNFVVVYIDRGVGMGIFIKNALYRGETGA 242 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E GH+ P G C CG GCLE + ++ AQ ++ S + P + +L Sbjct: 243 AAEYGHSPFTPDGAACRCGKKGCLEAYIADYALYREAQKLPKETSPSAMFYGPEYIQNLR 302 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A GD A+ + T G +G LA ++L +P +I++ +A D+ ++ + Sbjct: 303 ARARVGDAQAQKVFTDAGFALGVSLARTISLLDPSRIVLTGKAMQAYDLFKHGMNKGLES 362 Query: 362 QALPAYSQHISVESTQFSNQGTMAG 386 L +++E + + G Sbjct: 363 SLLAPLLDAVNLEVLPWDEDFILQG 387 >UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESH3_9FIRM Length = 400 Score = 296 bits (759), Expect = 9e-79, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 165/387 (42%), Gaps = 13/387 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + + IK N +Y+LI+ +SR ++ +L+ +++ +V EM++ V + Sbjct: 2 KKYNQLLIKDNNKKQIYQLIEDFPGISRTQIAEQLKLSKTTVSALVDEMMQEMFVIDEGA 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 E+ +GR L V + + L + + +AL D + +V+ +E +K+ L Sbjct: 62 SESNRQGRKPNSLTVNNSTNYVIVLNWHKDNLEIALVDSAMNIVL--CREYDMKNTGDAL 119 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTEN----GIVHRMPFYEDVKEMPLGEA 181 + + ++F + + + + +PG+ID ++ +V + K L Sbjct: 120 AELKGYFEEFREAQCVDIH-VMGVCVIVPGMIDEKHDEIISVVLPTESQGNYKISRLRSM 178 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L+ G P+ I +D + + AE FG G + I + I+ VGA +I DGHLL S Sbjct: 179 LD---GYPLAILNDTACFAYAETAFGKLDG-ENYIYININDGVGAAIIHDGHLLSGASGM 234 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 + GH VD G C CGN GCLE ++ L + S G+ L L Sbjct: 235 ATQFGHFSVDRNGYPCACGNRGCLENQIGELALPRLFEEFGLDVPKS--SGEKLLFKDLA 292 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 D A +++ + L + LF+P+ ++IG K D ++ ++Q Sbjct: 293 ALVRAEDEDALKLMSYMAEDFAYALCNAITLFHPELVIIGGIGRKLGDRFLELLKGKMQQ 352 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAA 388 + + V T+ + GAA Sbjct: 353 FGFRQFVSDVDVVYTKLGEASVVRGAA 379 >UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LTZ1_ACIC1 Length = 436 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 168/386 (43%), Gaps = 15/386 (3%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 D I+Q N + R + G +SR DL+ L ++I +V E+ +LV E Sbjct: 5 ATQDVIRQRNLSVLLRRLHVDGALSRADLTAAMGLNRSTIKALVEELAAMNLVTETIPGT 64 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL--ALKDDLPLL 125 A GRP+ + V + + L+ + + +A L ++ L ++ Sbjct: 65 AQRAGRPSHVVAVRCDTAYVLAANVGVDTVTVAAFGLGGHILARRDYPLGGPGASADAVI 124 Query: 126 DRIISHIDQFFIRHQKKLER-LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 R+ + ++ +R L I + +PG++ E+G V P + +P L Sbjct: 125 ARLAAECAAIRSALERSPDRRLVGIGVAIPGMVHAEDGRVEFAPNLM-WRNVPFAAPLSA 183 Query: 185 HTGV--PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 V P+ I +D +AE + GA RG ++ + + +G G+I DG L+ Sbjct: 184 ALDVDVPIRIGNDGDLGALAEQVRGAGRGVAHLVYIAGEVGIGGGIIVDGRLVLGRHGFA 243 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 EIGH V P G+ C CG GCLET ++IL + + + Sbjct: 244 GEIGHVMVHPDGRPCRCGGRGCLETEVGEEAILTACGRDPRAGRQAT--------HEVFE 295 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 AA RGD A+D + + +GR L ++N+F+P+ ++IG PLS + PVI + + Sbjct: 296 AARRGDRRAQDGLRHIAVWLGRGLGSIINVFDPEVVIIGGPLSSLLPLAEPVIREELAAS 355 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAA 388 LP + + + + ++ GAA Sbjct: 356 TLP-HRRSVQIRPPGLGEDSSLFGAA 380 >UniRef50_A3TZT8 ROK family protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TZT8_9RHOB Length = 381 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 173/387 (44%), Gaps = 24/387 (6%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 + + + GP+SR DL R L+ A +TK+ +M+ ++++ E + GRP V L Sbjct: 6 AEILKTLRDKGPLSRADLVRATGLSSAGVTKLTAQMIVDGVLRQSRAVEEKSIGRPPVTL 65 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL-DRIISHIDQFFI 137 V+ ++ L + + G + +AL D+ L L +DL L DR+ ++ Sbjct: 66 DVQRQSRFVLGIHLGAGRMSVALSDVGLALRCPRHLSYDLSEDLETLVDRVSRLAEEVID 125 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDIS 197 + + + +PG +D + R +++ + E+ G+PV ++H+ + Sbjct: 126 ASGVYRLDILGVGLGVPGSVDPNRRVNVRS-ILTGWQDVAFADVFERKLGLPVIVEHNAT 184 Query: 198 AWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRC 257 A +AEAL GA R A ++ +++ +GAG G VEIGH V+P G+ C Sbjct: 185 AMAVAEALHGAGRDAESILYLLLGKGIGAGFAQTGA---GARCGAVEIGHIVVEPGGRPC 241 Query: 258 YCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITG 317 CG GCLE S + + +++ + + + A D + Sbjct: 242 LCGGQGCLERFFSEEPLRKMSGEKGDDHS-----------QMIDAAMQSPD------WSA 284 Query: 318 VGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ 377 A++ + L+ V L P++I++G L+ A D + + + +P + + +E + Sbjct: 285 TYAYLLQALSTTVTLMAPERIVLGGFLNAAPDRFVASLKRDLAPRVMPQQRERLRIERSS 344 Query: 378 FSNQGTMAGAA--LVKDAMYNGSLLIR 402 S + GAA +++ YNG+ R Sbjct: 345 LSEPVGVQGAATIALEEFFYNGASTAR 371 >UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57B53 Length = 381 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 78/383 (20%), Positives = 165/383 (43%), Gaps = 17/383 (4%) Query: 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLV 79 + L+ SR+DL+R L ++++ + ++ A ++ E + GR L Sbjct: 8 RLLWLVAHGHATSRMDLARALGLPQSTVSVRTQALMSAGVLSESGEGRSAG-GRRPKLLT 66 Query: 80 VETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLPLLDRIISHIDQFFIR 138 V E H + + + + D++ +L+ + L + ++ L+ + + + Sbjct: 67 VNAEFGHVWAADVGSRHVRIGALDIAGRLLEVHERPLDISQEPRELVAGLAAAVRDVMAG 126 Query: 139 HQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISA 198 R + + PG +D + G + + + AL +H +PV + +D + Sbjct: 127 AD-CPGRALGLGVAFPGPVDVDAGTITLPSRMPGWRGFAVRAALAEHFELPVVVDNDANM 185 Query: 199 WTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD-PYGKRC 257 + E++ GA R ++ V +G+G++ G L + +I H +V + C Sbjct: 186 LALGESVAGAPG--RTLLVVKAGTGIGSGIVLGGELYRGRAGVAGDISHVRVPAAEDQPC 243 Query: 258 YCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITG 317 CGN GCLE +AS +++ Q + + T + A G A + Sbjct: 244 TCGNRGCLEVVASGAALVGQLQAQGL---------KLETTAQVMATAEDGHPEATTAVRR 294 Query: 318 VGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ 377 G +G +LA +VN NP ++L+G LS ++ + ++ ++ LP ++ + ++ + Sbjct: 295 AGLRLGEVLATVVNFSNPDEVLLGGALS-GSEAFVAAVRGALYERCLPLATRELRIDRVR 353 Query: 378 FSNQGTMAGA-ALVKDAMYNGSL 399 F + GA AL DA++ ++ Sbjct: 354 FGADAGLYGAGALALDAVFEQAI 376 >UniRef50_C7R070 ROK family protein n=2 Tax=Micrococcineae RepID=C7R070_JONDD Length = 410 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 88/405 (21%), Positives = 159/405 (39%), Gaps = 31/405 (7%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLG-PVSRIDLSRLAQLAPASITKIVREMLEAHL 59 M + +++ N V + I P+SR L+ L A+++ +V +++AH+ Sbjct: 1 MTVVHSAAGQHTLRERNLALVAQEIFGSKDPLSRAALAVRTGLTRATVSSLVDLLVDAHI 60 Query: 60 VQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQE--LA 117 V EL+ + GRPAV L + + L ++ + + DL+ Sbjct: 61 VAELDPVFSRKAGRPAVPLTPARGTYFGIGLEVNVSYLGGVIHDLTGTAYHRILLPGDFH 120 Query: 118 LKDDLPLLDRIISHIDQFFIRHQKKLER-------LTSIAITLPGIIDTENGIVHRMPFY 170 D +L+++ + + R +T + LPG++D N + P Sbjct: 121 GSDPATVLEKLAAVTTELITTATASELRPTHSTPIITGAHLALPGLVDPNNATLRIAPNL 180 Query: 171 ED-----VKEMPLGEALEQHTG--VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHN 223 V P+ A+ TG V I ++ + +A I V + Sbjct: 181 GWADLDPVDTTPISAAVTAATGQHTNVRIGNEANYGALAAK---EQANLNTFIYVSGEVG 237 Query: 224 VGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLN 283 +G+ +I D L E+GH +DP G +C CG+ GCLE A +D++L AQL + Sbjct: 238 IGSAIILDHTLFLGRRGWSGELGHVTIDPTGPQCSCGSRGCLEQYAGLDAMLTAAQLDTS 297 Query: 284 QSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP 343 ++ L A +G+ A D + +GR L+ NL + ++G Sbjct: 298 AGITG-----------LVTALEQGNPHAHDAVQRAATALGRALSGYANLLDIHMFVLGGI 346 Query: 344 LSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA 388 + + +++S+R Q L A + + M GAA Sbjct: 347 YADLYPHIVTTVTESLRHQVLSAPWADFDILPGTLGSGAAMLGAA 391 >UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT5_ACIBL Length = 347 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 138/319 (43%), Gaps = 17/319 (5%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIISHIDQFFIRHQKKLE 144 + + + + + +A + L+ + + ++ ++ ++ I ++Q Sbjct: 3 YAIGVDLGGTNLRIAAVEERGTLLEKVTLGTQVQRGREYVVGQMTDAIRHVTTKYQ-DHG 61 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 +L I I +PG ID + G V P P+ + +E G V +++D +A M E Sbjct: 62 KLIGIGIGVPGFIDMDTGTVRESPNLPGWSNYPVHKDIESRLGTKVILENDANAAAMGEK 121 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 GA R D++ + VG G+I G L H + E+GH V P G C CGNHGC Sbjct: 122 WLGAGRDTDDMVMYTLGTGVGGGIIMAGRLWHGMNGMAGELGHHTVLPDGHICGCGNHGC 181 Query: 265 LETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALRGDLLAKDIITGVG 319 LE AS +++ +A+ + +S L + + + Q A++GD A++I VG Sbjct: 182 LEQYASATAVVRMAREAVANGLSDALANASRNDVEFSSKVIYQLAIQGDKAAQEIFNTVG 241 Query: 320 AHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL----------PAYSQ 369 +G +A MVN N +IG ++ A D + + +R+++ A + Sbjct: 242 HSIGIAVANMVNALNFPMYVIGGGVASAWDAFHNPMMEEVRKRSFIYRVTAPEAVAAGQK 301 Query: 370 HISVESTQFSNQGTMAGAA 388 V + GAA Sbjct: 302 RTIVTRALLGGDAGLFGAA 320 >UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WP29_ACTMD Length = 410 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 169/385 (43%), Gaps = 19/385 (4%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 ++ N V R + L P +++ L+R L+ A+++ +V + + +V E++ E Sbjct: 21 SSVRALNTRRVLRAVMVL-PATQVQLARRTGLSQATVSGVVGRLQQEGVV-EVDEGEGER 78 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEE--SQELALKDDLPLLDRI 128 R + V + + + + +ALR + ++ V+ + ++ + +DD + Sbjct: 79 GKR----VRVAPMRGAAVGIEVGHDRLIVALRRIDNEEVLHQGGNRLVVGRDDRAWVGEA 134 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRM--PFYEDVKEMPLGEALEQHT 186 + ID + SI + LP +D G V++ ED++ P E+H Sbjct: 135 VRLIDDLLESTGMVAADVVSIGLGLPAAVDPRRGRVNQSVTAMKEDLRGNP-ATWFEEHY 193 Query: 187 -GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 GVPV + ++ + E +G R A ++ V +GAG++ G + E+ Sbjct: 194 PGVPVVVDNEANFAAYGEYTYGVGRDAEVLLFVKASTGIGAGLVIGGTVFRGRHGFAGEV 253 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH +DP G C CGN GCLET+ S ++E + + P+T+ L + A Sbjct: 254 GHLTMDPNGLVCRCGNRGCLETLVSGPRLVEEVRQAYRGHRVDL----PMTLAGLIERAR 309 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 D + ++ G ++G LA + N+ NP +++G L +A D++ + + + L Sbjct: 310 AHDPVCVRVLQDAGRNIGLALARVCNIVNPDLVVLGGELGEAGDLVRKHAARDLERNVLT 369 Query: 366 AYSQH---ISVESTQFSNQGTMAGA 387 +H + V ++ GA Sbjct: 370 GMLEHEHPVVVRVSELGLLAGPRGA 394 >UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCX5_ACTMD Length = 382 Score = 294 bits (753), Expect = 5e-78, Method: Composition-based stats. Identities = 82/381 (21%), Positives = 157/381 (41%), Gaps = 24/381 (6%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +++ N+ V I SR ++ L A+++ +V M+ A LV E + G Sbjct: 1 MRRLNSALVLDAIASAPGSSRASVATRTGLTKATVSSLVDRMIGAALVVEGAAEARSGPG 60 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R L + H L + + + L DL+ ++ ++ + P L ++ + Sbjct: 61 RRGTALHLSPAGPHGLGVEVGVDYLATCLVDLTGRVRKRWVRDSDNRASSPAL--VLGEV 118 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT-----G 187 ++ + I + +PG++++ +G++ P +E+ + L + G Sbjct: 119 AAAVRIATREDVPVGGIGVAVPGLVESASGVLRVAPNL-GWREVDVRGELGRLLGADAGG 177 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +PV + ++ + +AE G + +D + V + +GAG++ D L S EIGH Sbjct: 178 LPVQVGNEANLAALAELWHGDA--PQDFVHVSGEIGIGAGIVVDAGLFEGVSGFGGEIGH 235 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 VDP G RC CG+ GCLE +A D IL A V L Sbjct: 236 LSVDPSGPRCTCGSRGCLERLAGQDEILRAAGAA--------------DVADLLARLDAD 281 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D A + +G L+ VNL +++G ++ L P + + + + A Sbjct: 282 DREAVAAVRTAARWLGIALSGAVNLLGLPAVVLGGAYARLEPWLRPTLEAELGGRVVSAA 341 Query: 368 SQHISVESTQFSNQGTMAGAA 388 ++V ++ ++ + GAA Sbjct: 342 WSPVAVTASSLGDEAAVRGAA 362 >UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=2 Tax=Clavibacter michiganensis RepID=B0RFZ3_CLAMS Length = 444 Score = 293 bits (752), Expect = 6e-78, Method: Composition-based stats. Identities = 88/425 (20%), Positives = 163/425 (38%), Gaps = 22/425 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGP-VSRIDLSRLAQLAPASITKIVREMLEAHLV 60 V + ++ I N V + + SR +++ L+ ++T + R +++ LV Sbjct: 22 VPMRRGTNLPAIGGYNRTVVLDAVRRAAEGASRSEIAERTGLSAQTVTNVSRRLIDEGLV 81 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LK 119 +E G+P L + + + + I L DL ++ S Sbjct: 82 REGGTV-IRGPGKPRTLLHLVAGGRFAVGVHMDPAVITSVLLDLEGTVLRHVSSPTPSAS 140 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 ++ + +D + + + PG ID G+V P + +PL Sbjct: 141 RPDEVVALVARLVDGLIAGAGVDRGAVLGVGLAAPGPIDVGAGLVLDPPMLPHWRHVPLR 200 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 AL TG+PV ++ D++A +AE FG R + V G G++ G + S Sbjct: 201 SALSTATGLPVLLEKDVTAAAVAELWFGPG-DRRHLAFVYYGTGFGTGLVLGGEPVRGAS 259 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELA----QLRLNQSMSSMLHGQPL 295 S+ + GH V G+RC CG GC+ + + +++ A LR + L Sbjct: 260 SNAGDAGHIMVAARGRRCTCGRVGCVGELITPHALVRQAVEGGVLRAGDVSDAALEEAAA 319 Query: 296 TVD------------SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP 343 + D +L A D A+ I+ H+ R + I VNL + +++ G P Sbjct: 320 SGDAVDMRLIGEAFHALAARADTEDGSARRIVEAAARHLARAIVIQVNLLDLDEVVCGGP 379 Query: 344 LSK-AADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLI 401 A ++ + + +R+ + V + GAA LV D ++ Sbjct: 380 FWHPIARLVLETLPEEVRRSPALIAKHPVRVVESAVGEDVAAVGAACLVLDNAFSPRPSA 439 Query: 402 RLLQG 406 L++G Sbjct: 440 MLIRG 444 >UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJQ5_CATAD Length = 390 Score = 293 bits (751), Expect = 8e-78, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 174/374 (46%), Gaps = 11/374 (2%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHL-VQELEIKEAGNRGRPAV 76 AV L+ + GP+SR ++ + +L+PA+IT+ R +L L V+E AG GRP+V Sbjct: 14 RTAVLALLARRGPLSRAQIAEMLELSPATITQGTRRLLAEGLLVEEAPRPSAGGGGRPSV 73 Query: 77 GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFF 136 L + + H + ++++ + L + +V + + + + I Sbjct: 74 PLSLVPGSAHTIGIQVAHEHVTGVTSRLDATVVHSFRHAFDPASPDAV-ETLTALIRSEI 132 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 +++ L + + +PGI++ E G + +PL L + GVPV++ +DI Sbjct: 133 EEIERRGLPLAGVGVAVPGIVEPETGTLSMSVRL-GWTGLPLAARLREALGVPVFVDNDI 191 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 SA T AE L+G D + I +G G++ DG + + E GH V P G + Sbjct: 192 SAVTAAERLYGPGADEADFLLAAIGQGIGLGMVLDGAPYRGAAGAAGEFGHMPVQPDGPQ 251 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIIT 316 C CGN GCLE++ S +++L A S L D L AA GD A ++ Sbjct: 252 CVCGNRGCLESLVSTEALLRTAHEAGILPAESDL-------DDLGTAARHGDPAAVQLLH 304 Query: 317 GVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVEST 376 +GR LA +VNL P+ ++I ++ D+L + +++ LPA + +E Sbjct: 305 NAATLLGRALAGVVNLLGPRSVIIIGEITAIWDLLDDPLHEALLDHLLPA-VRDTRIEVR 363 Query: 377 QFSNQGTMAGAALV 390 + ++ A AA V Sbjct: 364 PWHDEVIAASAARV 377 >UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus faecalis RepID=C0X1R1_ENTFA Length = 388 Score = 293 bits (751), Expect = 8e-78, Method: Composition-based stats. Identities = 79/376 (21%), Positives = 157/376 (41%), Gaps = 18/376 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 I++ N + I + +SR +LS++ L AS++ I +++ + E I EA NRG Sbjct: 8 IREQNEAQILNQIIKHREISRAELSKITSLNKASVSSITNKLINDGFIIEKRIGEATNRG 67 Query: 73 RPAVGLVVE-TEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 R + L + + +++ + I AL L K + + + D I Sbjct: 68 RKPIMLTFNGSSSALVIAIDLGYNYIDGALASLDGKEIHRVQLIDTYVNKKNVQDLIHKV 127 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 +Q + + I L G + N I+ Y D+ E+ L E L Q PV+ Sbjct: 128 FNQLTSDCPHTHYGIVGMTIALQGQV-LNNKIISTS--YNDLAEINLVEMLNQEYNFPVF 184 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 +Q++ + + E F + ++ + + +G G++ +G L ++GHT + Sbjct: 185 LQNEANLSALGEYTFSS--DIENLASISLHSGIGVGLVKNGKLDVGNKGYAGQLGHTILF 242 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 P G++C CGNHGCLE S I +S + + D + + Sbjct: 243 PNGRKCTCGNHGCLEKYCSTQVIY--------HEISKEKNLNKINSDVVSILYNNKESKV 294 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 +I ++ + + L+ P+ ++ SPL+K + +I ++ Q +++ + Sbjct: 295 VKMIEQYAYYLSIGVNNAIMLYAPELVIFNSPLTKKIPDIINIIQRNLNNQ----FTKDV 350 Query: 372 SVESTQFSNQGTMAGA 387 V ++ ++GA Sbjct: 351 LVINSPIEWNPVISGA 366 >UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=Actinobacteria (class) RepID=A9WL96_RENSM Length = 416 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 84/391 (21%), Positives = 169/391 (43%), Gaps = 14/391 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 AG ++++ +R +L+ L LA +++ + + L+ + GRP Sbjct: 35 AGELFQIFRDGQARTRAELAELTGLARSTVAARLDALTALGLIGPAGEAVSSG-GRPPSR 93 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIISHIDQFF 136 + A ++ + + +AL DL +L+ E + D +LD +I + Sbjct: 94 VAFNPTARIVFAVDVGATHLLVALTDLGGRLLGERKVAADVSDGPEKVLDLVIRQCQELL 153 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 + + L I I +PG ++ +G P + +++ V + +D+ Sbjct: 154 AESGRSAKELAGIGIGVPGPVEHSSGKPASPPIMPGWDRFDIPSYIQRVFDTDVLVDNDV 213 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY-GK 255 + + E R A+D++ + + +G+G+I+ G L + ++GH +V G Sbjct: 214 NIMALGERAA-HWREAQDLLFIKVATGIGSGIISGGLLQRGADGTAGDLGHVRVARGEGI 272 Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDII 315 C CGN GCLE IAS +I L +S +G + + G++ A + Sbjct: 273 ICRCGNEGCLEAIASGPAIAR----ALTESGVPANNG-----EEILALVRAGNVQAIQVF 323 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 G VG +LA V++ NP ++IG LS A + L + + + ++LP + +S+ Sbjct: 324 RQAGRDVGDVLATCVSMLNPAVVVIGGSLSAAGEHLLAGVREVVYARSLPLATSRLSIVQ 383 Query: 376 TQFSNQGTMAGAA-LVKDAMYNGSLLIRLLQ 405 ++ + + GA+ +V D + + S + L Sbjct: 384 SKAGAEAGVLGASRMVTDHVLSASRIDAALA 414 >UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3C7_9BACT Length = 322 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 59/305 (19%), Positives = 137/305 (44%), Gaps = 2/305 (0%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD-RIISHIDQFFIRHQKKLE 144 + + + + + + ++ + S + + ++ +I I + + Sbjct: 7 YIIGVDLGGTNLKAGIVGRDGNILYQFSIKTNAHAESQVISHQICELIAGIIKNVRIEKS 66 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 + I + PG+ID + + P +++P+ + + G+P +++D +A E Sbjct: 67 DILGIGLGSPGLIDKKGETILFSPNLSKWRDIPIKKIISDTFGLPCILENDANAAAWGEK 126 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 GA + ++ + + +G G+I D L +++ EIGH + G C CGN+GC Sbjct: 127 WVGAGKDVSSLVMLTLGTGIGGGIILDNKLWRGINNTAGEIGHMSIQTDGPLCNCGNYGC 186 Query: 265 LETIASVDSILELAQLRLNQSMSSML-HGQPLTVDSLCQAALRGDLLAKDIITGVGAHVG 323 +E AS ++ + L +S+L + +T + +AA++GD + II G ++G Sbjct: 187 IEVYASAPGMVRRFRELLESGKASLLKKDEEITAKRINEAAVQGDGASLSIIEETGRYLG 246 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 + ++++ NP +++ L + ++L + +I ++ L A + + +Q Sbjct: 247 IAIVNIIHILNPGAVVLSGGLIGSGELLMRPVKRTIEERVLKASYKDTKILFSQLGTDAG 306 Query: 384 MAGAA 388 + GAA Sbjct: 307 IIGAA 311 >UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDS2_CLOTS Length = 311 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 143/310 (46%), Gaps = 8/310 (2%) Query: 88 LSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHID-QFFIRHQKKLERL 146 + + + I + L D + K++ S+ K + + I+ I + R + + Sbjct: 3 IGVDVGGTNIAVGLVDENGKIIATGSRPAEPKRGYAAIAKDIAEISLELIKRCGLDISDV 62 Query: 147 TSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALF 206 S+ I +PG+ D E GIV R ++PL + + ++ +P+ + +D + +AE +F Sbjct: 63 ESMGIGVPGVADNEKGIVLRAVNLY-WTKVPLVKEIHKYIDIPINMDNDANVAALAEGIF 121 Query: 207 GASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLE 266 GA +G + + + VG+G I +G + + E+GH + G C CG GC E Sbjct: 122 GAGKGTNSSVTITLGTGVGSGFILNGKVFNGAHHFAPELGHIVLGDNGVMCNCGKIGCFE 181 Query: 267 TIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLLAKDIITGVGA 320 T AS +++ + + + +S++ + +T ++ AA + D A I Sbjct: 182 TYASATALIREGKKAVMKDSNSLILKLAGGEIESITAKNVIDAAKQFDEAAMMIFNDYVK 241 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSN 380 ++ + ++N+ +P+ I+IG ++ A D L + + + + L + ++ + N Sbjct: 242 YLAMGIVNIINILDPEVIIIGGGVANAGDFLLKPLKEEVSKNILFKDLPYADIKKAELGN 301 Query: 381 QGTMAGAALV 390 + GA+++ Sbjct: 302 DAGIIGASIL 311 >UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A233_RHILW Length = 321 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 76/303 (25%), Positives = 136/303 (44%), Gaps = 6/303 (1%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFFIRHQKKLE 144 + + + ++ AL D +++ ++ L +L +I D+ K Sbjct: 4 VAIGIDLGGTQVRAALVDEHGRILTRLAEPTDALAGPDRVLAQICGLADRLLAAS--KPA 61 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 + + ++ PG +DT G+ +P + PL L++ PV +++D A + E Sbjct: 62 SVVGVGVSAPGPLDTVTGVATDIPTLPGFVDFPLKAELQKRFAFPVDLENDAIAAAVGEW 121 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 FG +G +++ V + +G GVI+DG ++ +GH V P G+ C CGN GC Sbjct: 122 QFGIGKGLDNLVYVTVSTGIGGGVISDGRVVRGRKGMAAHVGHMSVVPNGELCPCGNRGC 181 Query: 265 LETIASVDSILELAQLRLNQSMSSML--HGQPLTVDSLCQAALRGDLLAKDIITGVGAHV 322 E S + AQ+R +S + L +G + S+ AA GD LA ++ + Sbjct: 182 FEAYGSGPAFARRAQMRAMESRDTTLGSNGGAIDSRSVFAAARNGDRLANQLVDEEAEIL 241 Query: 323 GRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQG 382 GR ++++F+P I++G LS D L P I I Q A+PA+ + + V Sbjct: 242 GRGFTNLIHIFSPDIIVMGGGLSHEFDRLQPGIQAYISQWAMPAF-KDVKVVLAALDQNS 300 Query: 383 TMA 385 + Sbjct: 301 GLV 303 >UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A2C4_ENTGA Length = 388 Score = 291 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 156/374 (41%), Gaps = 18/374 (4%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN-RG 72 + N LI +SR DLS + L A+ + IV++++E LV E+ E+ N G Sbjct: 13 RTKNESLCLELIMNNHNLSRADLSTMTGLTKATTSAIVKKLIEDQLVIEIGTGESSNVGG 72 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R + L ++ +S+ I I L L + V ++ D+ + D Sbjct: 73 RKPIILQYNGKSGLSISIDIGYNYINGLLAFLDGEEVQSIQKKPIHLDEHTIKDHFTELF 132 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 + F + + + I + G + G V P +E + ++P + E+ PVY+ Sbjct: 133 NHFKKSLPETYYGIIGVVIAVHGPV--HEGNVIFTPHHE-LAQIPFRDIAEELVDYPVYL 189 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +++ + + E F + + +I + + +GAG++ +G L + EIGH V Sbjct: 190 ENEANLSALGEYTFSS--KSSSLICINMHSGIGAGIVQNGILQTGTNGLAGEIGHQIVVL 247 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CGNHGCLE A A + +++ + L + D A Sbjct: 248 DGIECPCGNHGCLEMYA--------ANKVCFEKFANIKSMDYVNAIILREYYQNNDPDAI 299 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 + ++ + +V ++P+ I++ S L + ++ S+ + +S+ + Sbjct: 300 HVTEENVHYLSAGINNLVVHYDPEVIILNSSLYHEIPDMIGQLTKSLHSR----FSEKVI 355 Query: 373 VESTQFSNQGTMAG 386 V S+ + T+ G Sbjct: 356 VRSSLLDEKATLLG 369 >UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY82_9CLOT Length = 400 Score = 291 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 74/389 (19%), Positives = 169/389 (43%), Gaps = 15/389 (3%) Query: 16 TNAGA-VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRP 74 +N +I + G +++ + + + ++ ++++ + + L+ E I ++ GR Sbjct: 9 SNRELETLDIIQKKGLITKKSIQAITGMTLTTLNRVMKSLEDKKLISEAGISKSTG-GRK 67 Query: 75 AVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHID 133 AV V + + + +SR + + + +L ++ ++ + +++I + ID Sbjct: 68 AVKYDVAQSGIYAIGVDMSRTYVRIVILNLKMTILEKKEFFMDDSFSPEKTVEKIGNIID 127 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYED--VKEMPLGEALEQHTGVPVY 191 + ++ + I I G +D E G++ + + +P+ + E+ T +P + Sbjct: 128 EGLLKLSIDKSEVLGIGIGTVGPLDREKGVMINPKNFFNELWSNVPIRDMFEKRTSLPCF 187 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 I + +A +AE LFG + ++++ V + + VI +G ++ S H VD Sbjct: 188 IDNGTNAAVLAEYLFGKGKDFKNIVYVHCGIGIRSAVINNGIIIRTMRDSEDAFAHMVVD 247 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-QPLTVDSLCQAALRGDLL 310 G+ C CGN GCL++ +S+++I++ L + + + + + + + Sbjct: 248 FNGEECSCGNKGCLDSYSSINAIVKSFNSILKNNNNDTNEEIKEEDYKKILELTVNNNKS 307 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ-QALPAYSQ 369 A +II +G LA MV + NPQ +++ PL K + + D+ + L Sbjct: 308 AVEIINKGAEILGVGLANMVRILNPQLVILYGPLIKNYKLYYNKCIDAFNKSNCLNN--- 364 Query: 370 HISVEST---QFSNQGTMAGAALVKDAMY 395 V + +F G+ L+ Y Sbjct: 365 --EVIFSDGGEFKGNAIAVGSGLIVIENY 391 >UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepID=A4WVU3_RHOS5 Length = 425 Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 97/368 (26%), Positives = 170/368 (46%), Gaps = 8/368 (2%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR--PA 75 V+ + G +R+ ++R ++PAS+T IV E++EA LV+E+ + G GR P Sbjct: 32 RQQVFERVRAAGLTARVQVARDLGVSPASVTTIVSELIEAGLVEEVATRRGGESGRGRPV 91 Query: 76 VGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVE---ESQELALKDDLPLLDRIISHI 132 V L V A + L+IS ++ + D + +L+ E E + +AL LL + + + Sbjct: 92 VALGVRGAAHRVVGLKISDRDLSAVVMDFAGRLLAEHHEERRPVALA-PASLLAVLETLL 150 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 D+ + + L ++ I LPG +D+ G V + +++PLG + G+PV + Sbjct: 151 DRVTAKAGLARQELAAVGIGLPGYVDSTGGRVLWSSILAE-RDVPLGRLATERLGLPVQV 209 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +D + MAE FGA R D + V I+H +G G++T+ + +E+GHT+V Sbjct: 210 DNDANLCAMAELWFGAGRRLSDFVVVTIEHGLGMGMVTNHRIFRGARGIGMELGHTKVQL 269 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CG GCLE + ++ A LN + + ++SL A G+ A+ Sbjct: 270 DGALCRCGQRGCLEAYVADYALAREATTALNWTHRES-QSMAILLESLHDHAKAGNQAAR 328 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 I G ++ LA +VNL +P I++ + + + L Sbjct: 329 SIFRRAGRYLAVGLANIVNLVDPPLIILAGARLRFDYLYAEDTLAEMNALVLATGRPLPE 388 Query: 373 VESTQFSN 380 +E + Sbjct: 389 IEIHAWGE 396 >UniRef50_A8UDG8 Xylose repressor protein n=2 Tax=Firmicutes RepID=A8UDG8_9LACT Length = 395 Score = 291 bits (746), Expect = 3e-77, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 159/382 (41%), Gaps = 17/382 (4%) Query: 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE--IKEAGNRGRPAVG 77 + +I GP+SRID+S+ + PA+++ IV ++ L+ E + + GR + Sbjct: 13 KILDIIYTKGPLSRIDISQATGITPATVSDIVGNLIVEQLIHETGEIVSDTNKSGRKKIS 72 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR--IISHIDQF 135 L + Y+ + +S L D L ++ L ++ + F Sbjct: 73 LDISPNHSFYIGVELSEKFFAYCLIDNKQNLFEKKILTNDPSTPERNLTASLFVTELHSF 132 Query: 136 FIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHD 195 + SI I LPG D EN + + + L +PVY +++ Sbjct: 133 LLHC--SNYHPQSIGIALPGHFDEENQSILTNNSF--WTNFNFKQLLS-TINLPVYFKNN 187 Query: 196 ISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGK 255 + T++E LFG + V + + I +L ++ + EIGH V P G+ Sbjct: 188 VHCMTLSERLFGHDSTDNNFTFVHVGRGMFCSSIYQSNLYGDNNNLVGEIGHIVVHPDGE 247 Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALRGDLL 310 C CG GCL+T AS I++ +Q+ ++S S+ L LT++ + QA GD Sbjct: 248 LCECGKRGCLQTYASESWIIKKSQILFDKSDSTYLRQLATDRAHLTIEVILQAYKLGDEG 307 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ-ALPAYSQ 369 +I+ ++ L + + + K++I L L +I D + + AL A + Sbjct: 308 VINILHNAIKYLSITLNNLSMMIDADKMIIHGELFSEKQ-LLDLIKDYLEKNIALLATKK 366 Query: 370 HISVESTQFSN-QGTMAGAALV 390 +E +S G ++ A L Sbjct: 367 KTLIEIKNYSAINGALSAAGLC 388 >UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavida DSM 17836 RepID=D2Q094_9ACTO Length = 423 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 126/310 (40%), Gaps = 15/310 (4%) Query: 88 LSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLT 147 + + I ++ + D ++ ++ KD D I + + + Sbjct: 33 IGIDIGGTKVAAGVVDPEGNILDRLRRDTPTKDPKETEDAIAEVVHDL-----ESRHDVI 87 Query: 148 SIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFG 207 ++ I G +D V P + PL +A+E+ G+PV +++D +A +E FG Sbjct: 88 AVGIGAAGFVDGTRSSVLFAPHLA-WRHEPLRDAVERRLGLPVVVENDANAAAWSEWRFG 146 Query: 208 ASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLET 267 +G ++ V + +G ++ DG L E GH QV P G RC CGN GC E Sbjct: 147 GGQGESHLVCVTLGTGIGGAILNDGALQRGKFGIAGEFGHMQVVPGGHRCECGNRGCWEQ 206 Query: 268 IASVDSILELAQLRLNQS--------MSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVG 319 AS +++ A+ ++ + + + + A GD +A +++ VG Sbjct: 207 YASGNALTREARELALSGSPVAHNLLRAAEGDPRRINGPMVTELAKDGDPVAVELLEDVG 266 Query: 320 AHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL-PAYSQHISVESTQF 378 +G LA + +P +IG +S A ++L ++ ++ + + Sbjct: 267 RWLGIGLANLAAALDPGTFVIGGGVSDAGELLLAPAREAFKRTLTGRGFRPEARIVRAVL 326 Query: 379 SNQGTMAGAA 388 + M GAA Sbjct: 327 GPEAGMVGAA 336 >UniRef50_Q11DN8 ROK domain containing protein n=3 Tax=Phyllobacteriaceae RepID=Q11DN8_MESSB Length = 442 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 92/413 (22%), Positives = 173/413 (41%), Gaps = 22/413 (5%) Query: 6 QPGHI------DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHL 59 Q G++ D++++ N V + Q SR ++++L L+ ++I+ I ++ Sbjct: 18 QGGNVTAGIRHDEMRKRNRALVIAAVRQSDQPSRTEIAKLTGLSHSTISTISAGLIAEGT 77 Query: 60 VQEL---EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL 116 ++E+ RGRP V L + +A L +S + + L D ++ + + L Sbjct: 78 MREVEQDGDTAPTRRGRPQVALSLNPDAASVACLYLSFNSLSVVLADYRGDVINQRTHRL 137 Query: 117 AL--KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVK 174 LL+ I+ + + I+ + GI D+ + P + Sbjct: 138 DTLAMSRQDLLEATIAALQDL----TRDRGEFLRISCAVQGITDSAGRELLWSPITP-LS 192 Query: 175 EMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHL 234 +P+G ALE GVP +Q+D + A R + + I +++ H +G G++ +G + Sbjct: 193 HLPVGAALEDAFGVPTTVQNDSNMMAEALRWLNPKRYSDNFIAILLSHGIGMGLMLNGKM 252 Query: 235 LHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQP 294 SS E GH P G C CG GC+E A +I A R + + + Sbjct: 253 FSGTRSSAGEFGHMIHKPGGALCRCGRMGCIEAYAGNYAIWRRASGRSPEER-PVADIEA 311 Query: 295 LTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPV 354 ++ L Q A + A+ G +G L + L +P + I + A DIL P Sbjct: 312 GEMEKLAQRARCEEGPARQAFREAGRAIGFGLGNLFALIDPAPVAIIGQGTAAFDILEPE 371 Query: 355 ISDSIRQQALPAYSQHISVESTQFSNQGTMAGAAL-----VKDAMYNGSLLIR 402 I ++ + A +++ IS E+ + + GAA+ + ++ G +R Sbjct: 372 IRSALAETAGGQHAEAISFETMPRARPLILHGAAMTALTDLDRHVFAGGPGVR 424 >UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWX4_STRM9 Length = 388 Score = 290 bits (744), Expect = 5e-77, Method: Composition-based stats. Identities = 86/395 (21%), Positives = 174/395 (44%), Gaps = 11/395 (2%) Query: 13 IKQTNAGA--VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 +K+ N + LI + V+R+DLS ++PA+I+K +++++E +LV E + + Sbjct: 1 MKRLNETEYEILELISKNHCVTRMDLSLKLNISPAAISKTMKKLIEENLVLEDDTL-SSK 59 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GRP L + +E + + G I++++ + ++ ++ K L+ + Sbjct: 60 GGRPRKILKINSEYKKVIGINFGPGFIYISVSKIDGSIIETRKKKFQFKVSQKLITLLTD 119 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 +D F R+ K + I + + GI++T +G P + + L E LE +PV Sbjct: 120 ELDLLFERYNKN--EILGIGLAVNGIVNTRDGSSIFSPHLK-WSNIKLREYLENKFNLPV 176 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 + +D+ A AE + +V+ + I +G+ ++ + + + EIGH + Sbjct: 177 IVDNDVRAMLKAEIY--KVKKLSNVMYIYIRDGIGSSIMINNKIFEGVNFCTGEIGHFII 234 Query: 251 DP-YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 +P RC CG +GCLE S I L + L +T + + A G+ Sbjct: 235 NPTSNSRCQCGKYGCLEAEYSSKMIRNKVIWELEKQ-GIELENNYITYKEIFEKASFGEE 293 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 K I+ +G + ++N+ + I+I + A +I I ++ Sbjct: 294 PYKAIVKEASIKIGSTVGNILNVLDIGNIIIAGDILHAKNIFLKNFEKGIDLMKTHSFES 353 Query: 370 HISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRL 403 +++ +T+F + GA LV +++G + L Sbjct: 354 MVNIYTTEFGDDVEKYGAIFLVIMNLFSGQKIFTL 388 >UniRef50_C2BRU2 Transcriptional regulator n=3 Tax=Mobiluncus RepID=C2BRU2_9ACTO Length = 403 Score = 290 bits (744), Expect = 5e-77, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 172/382 (45%), Gaps = 14/382 (3%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 PG ++ N V I G +S+ ++SR LAPA+++ IVRE+ EA +++ E Sbjct: 12 PGSPSSLRVANQKRVLSAIIDAGGISQAEISRRTGLAPATVSNIVRELTEAEILRLAEAA 71 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 GR + E + + + + R ++ + + L ++V + L + + + Sbjct: 72 S----GRRGNTIAFAPEIGYAMGVSLEREQVRVGIVTLDHEIVDTQVIPLPPEANATINK 127 Query: 127 RI-ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 + ++ D + ++ + I + + ++ + + + + L + ++ Sbjct: 128 EMSVALFDSMMAAKGLENAQIVAGCIVVADAVRSDGRMSNYTSMIPGLNGINLEDIAQEV 187 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 + P+ ++D +A +AE ++G ++ D + V +GAG++ G +L+ EI Sbjct: 188 SPFPILTENDANAGALAEHMWGVAKDVDDFVYVEASSGIGAGIMAGGKILYGTGGISGEI 247 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH + + + C CG GCLE IASV +I+ + L T+ L + Sbjct: 248 GHFPIPSHHELCKCGGSGCLEMIASVSAIMASLRS---------LEIPVHTLRDLYRLIE 298 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 GD+ I G +G +LA + N+ NP+ I+IG LS A + I ++I Q ALP Sbjct: 299 EGDVRVTRRIQEAGRAIGYVLAQVCNILNPKMIVIGGELSFAGESFLNQIRETINQFALP 358 Query: 366 AYSQHISVESTQFSNQGTMAGA 387 + ++ + + + GA Sbjct: 359 DCAADTTLRLSALGSSAPLRGA 380 >UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Propionibacterium acnes RepID=Q6A638_PROAC Length = 397 Score = 290 bits (743), Expect = 6e-77, Method: Composition-based stats. Identities = 84/397 (21%), Positives = 162/397 (40%), Gaps = 19/397 (4%) Query: 1 MVAENQPGHID-QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHL 59 + A GH D Q+ V +++ + ++R +++ + ++++ VR +LE+ + Sbjct: 9 LGATGMNGHTDDQLGSAPGQRVIKILRKTPGMTRAEIAESTSMPRSTVSAAVRHLLESRV 68 Query: 60 VQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK 119 V+E ++ GR L V + + + LA+ +L+ + ++ ++ Sbjct: 69 VEEYACADSTG-GRRPTKLRVAPAVGNAFVAELGQHHARLAIASREGELLATDDIKINIE 127 Query: 120 -DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 + + + + S + +PG +D +G V + Sbjct: 128 IGPEKTIKALAKGWHKLGDEIPGA---VVSAGLAVPGPVDG-SGHVVGAARMPGWSGKDI 183 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 L Q VP I++D A T+ E R I V +GAG ++ G Sbjct: 184 AGMLAQELAVPSVIENDARAATIGE-WNCRGRHRDSCIYVKAGTGIGAGWVSGGVAYRGS 242 Query: 239 SSSLVEIGHTQVDPYGK-RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTV 297 +I H +V C CGN GCLET+AS +IL RL S+S T Sbjct: 243 RGLAGDITHLRVHTDNPLPCTCGNSGCLETVASGAAILRQLG-RLGSSIS--------TT 293 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 L A GD A ++ G +G +L+ +VN NP +I++G +S+ L + Sbjct: 294 SQLVTAENSGDPQAVSLVRDAGMRLGEVLSNLVNFLNPVRIVLGGSMSQMGS-LLAGVRS 352 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAM 394 + ++ LP ++ + +E++ + G +++ M Sbjct: 353 ELYERCLPMCTEDLVIETSACGADAPLIGMSILDSHM 389 >UniRef50_A3CKM1 ROK family protein, putative n=2 Tax=Firmicutes RepID=A3CKM1_STRSV Length = 398 Score = 290 bits (743), Expect = 7e-77, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 168/385 (43%), Gaps = 18/385 (4%) Query: 14 KQTN--AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 ++ N V + P+SRID+S+ Q+ PA+ I+ E+++ LV EL + Sbjct: 5 RKQNELRATVLDQLYAKRPISRIDISKETQITPATTGSIINELIKEGLVLELGELNDESV 64 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIIS 130 GR L + + +YL IS ++ + + D + ++ + ++ P II Sbjct: 65 GRKKTLLDIAPRSRYYLGFEISEKQLAIVIADNTGEIAESSIRTYQIEVTGGPSDQEIIR 124 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENG--IVHRMPFYEDVKEMPLGEALEQHTGV 188 I F ++ +++IA+ LPG ++ I+ + P + + + +++ + Sbjct: 125 LIQDFLKKN--SQYPISAIALGLPGHVNLSESDFIISKNPHWGQIN----LQTIQEAFDL 178 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PVY + TMAE LF + I + + + G + + + E+GHT Sbjct: 179 PVYFANKSHCLTMAERLFSYHPTDSNFIVYHVARGIHCSYMYKGSIYSQENYLIGEVGHT 238 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQA 303 ++P G+RC CG HGCL+ AS ++++ A + S +S+L + + SL A Sbjct: 239 VINPEGERCPCGKHGCLQVYASESALIDKAAILYRASQTSLLKTLVEDANDIDLTSLMTA 298 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 GDL + ++I ++ ++ + L + ++I + L + ++ + + Q+ Sbjct: 299 YRLGDLGSIELIHTACRYLAISISNLCQLIDSERIYLDGQLF-SYPVIAEQVLAQLEQEV 357 Query: 364 -LPAYSQHISVESTQFSNQGTMAGA 387 L + + +S A Sbjct: 358 PLFPKQKQAEIVIIPYSKYSIARSA 382 >UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID=A6WEF3_KINRD Length = 390 Score = 290 bits (742), Expect = 9e-77, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 157/381 (41%), Gaps = 32/381 (8%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 Q + N V L+ GPVSR DL+R L ++++IV ++L LV EL ++ G Sbjct: 32 SQARAHNRSVVLGLLFHEGPVSRADLARATGLTRVTVSEIVGDLLTDGLVAELGLRPEGR 91 Query: 71 RGRPAVGLVVETEAWHYLSLRISR-GEIFLALRDLSSKLVVEESQELALKDDLPLLDRII 129 G+PA+ + + H +++ + R +A+ DLS +V E + ++ + Sbjct: 92 VGKPAMMVGLRAAEHHVVAVDLQRLPAARVAVLDLSGTVVSETTADVTGLRGEDATAALE 151 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 +R+ + I PGI+D +V + +PL E L GV Sbjct: 152 DLCRAGIAGAP---QRVVGVGIGTPGIVDATGRVVESA--RLGWRSVPLAERLSHALGVG 206 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V++ +D +AE +G + + V + VGAG++ DGHL+ + EIGH Sbjct: 207 VHVANDADTAALAEFTYGEA-SPSGFMVVAVGQGVGAGLVLDGHLVRGHRLAAGEIGHLT 265 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 VDP G+ C CG GCLETI + + R Sbjct: 266 VDPRGEPCECGRRGCLETIVAPAYLDRTLAGRTPARR----------------------- 302 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 + + G +G +LA +V + +++++ P L ++++ LP Sbjct: 303 --RSALRDAGHRLGAVLAPVVAALDLEEVILTGPAELLDGPLLEAARETVQTTCLPTEGT 360 Query: 370 HISVESTQFSNQGTMAGAALV 390 V Q G + GAA + Sbjct: 361 APQVRMAQLGANGVLQGAAAL 381 >UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c RepID=D1VEG0_9ACTO Length = 423 Score = 290 bits (742), Expect = 9e-77, Method: Composition-based stats. Identities = 92/407 (22%), Positives = 164/407 (40%), Gaps = 27/407 (6%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLE-AHLVQELEIKEA 68 +++++ N + R + GP R L+ L ++I + ++ A LV+E Sbjct: 15 QEELRRHNLSLLLRYVHLAGPTQRATLTAQTGLNRSTIGALAADLASTAGLVREESPDTH 74 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDR 127 GRP++ +V ETE + L+ + I A L L+ E L + + Sbjct: 75 SGAGRPSLVVVPETERYQVLAFDLGVDRIIAARVGLGGALLSREVVPLPPGERGFTAVVD 134 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT- 186 + + + L I + +P ++ + +G V P ++ PLG AL Sbjct: 135 LTAATARRLAEALGPLTHCAGIGVAVPAVVRSADGFVRFAPNL-GWEQQPLGAALRAALV 193 Query: 187 -GVP------------VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGH 233 +P V + +D +AE G +RG D++ + +GAG+I +G Sbjct: 194 DALPDRAIGGPVGSPAVQVANDADLGALAEHARGVARGHDDIVYLSGQVGLGAGIICNGR 253 Query: 234 LLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQ 293 L E GH V+P G+RC CG GC ET D+IL A S Sbjct: 254 PLRGHGGYAGEAGHMIVNPTGQRCRCGARGCWETEIGTDAILRAAGHEPGDGGS------ 307 Query: 294 PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFP 353 V ++ A GD A+ + V + + +VNLFNP+ ++ G L +++ Sbjct: 308 ---VRAVVAEASAGDARARLALYEVSRWLAVGVGNLVNLFNPELVIFGGELRDLLEVVEH 364 Query: 354 VISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSL 399 + + L +H+++ + ++ GAA L + + L Sbjct: 365 DVVGRMGAGGLTVSREHVALVPSALGGDSSLFGAAELAFAHLLDDPL 411 >UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=A5IKW0_THEP1 Length = 379 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 173/387 (44%), Gaps = 24/387 (6%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + +IK N ++ ++I + P+SR D+S + L P+S+T++ +E+++ ++E+ Sbjct: 4 NSPRIKILNKKSILKVIHENHPISRSDISEVTGLTPSSVTRLTKELIDEGYIREIGTMGK 63 Query: 69 GNRGRPAVGLVVE-TEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 + GR L+ A+ L I + ++ E + Sbjct: 64 NSPGRRRRILLDLRKNAFLSLVFDIGVNITTYGVGFFDGEV--EPRGTFNTPREPVEFFN 121 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 I+ I + R++ I++++PG++D E + P E + + + E L Sbjct: 122 IVKEIYERI----SGEYRISRISLSVPGMVDMEEKKILLAPNLE-WENVSIKELL--KVD 174 Query: 188 VPVYIQHDISAWTMAEALFGAS-RGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 VPV ++ + +AE R ++ + ++I VGAG++ DG + S + E G Sbjct: 175 VPVLADNEANLSMLAEKYHSEDLRNVKEAVFIIIREGVGAGLMIDGKIFRGPSFTAGEAG 234 Query: 247 HTQVD-PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 H V+ ++C+C N GC E ++S++ +E L + ++ Sbjct: 235 HMTVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKELPGKNA---------IEKFQALKQ 285 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 R D AK I+ ++ + +VN+ NP+ +++G + D ++ D + Q+AL Sbjct: 286 RND--AKRILMKFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFLDIVKDFVHQRALK 343 Query: 366 AYSQHISVESTQFSN-QGTMAGAALVK 391 A + + + +T+F N + GAA++ Sbjct: 344 AAVKDLKIRTTEFRNISSNLVGAAVLA 370 >UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter RepID=B0K0J6_THEPX Length = 381 Score = 289 bits (741), Expect = 1e-76, Method: Composition-based stats. Identities = 70/388 (18%), Positives = 161/388 (41%), Gaps = 23/388 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G IK N V +I ++ P+SRI++S++ +++ ++I+ IV E++E LV Sbjct: 1 MKDYTKGTSGLIKNINKANVLDVIKKMQPISRIEVSKVLKMSKSTISAIVDELIEEGLVI 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E E G GR + L +A + + + L +L K++ + E +K+ Sbjct: 61 ENGYGEKGTVGRKPIQLSFNPDARFVIGISVESTNSIGILTNLEGKILKKIKWETGIKE- 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + I+ I + + + + D + GIV P + L + Sbjct: 120 -QAFNGIVKGIKELAEEDKNIIGIGIGLPGIT----DIQKGIV-DAPGLK-WSNFDLKKR 172 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L + +Y+ + ++ + E G R + + + I + +G+G+ +G LL S + Sbjct: 173 LSEIFNYNIYVDNSVNYAALGERWIGCCREIENFVLINIGNGIGSGIYVNGTLLRGNSYA 232 Query: 242 LVEIGHTQVDPY--GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 E+G+ + + ++G E AS+ +++E L T++ Sbjct: 233 AGEVGYMAIGEDAFERVYSYEDYGYFERKASLSALVESVSKSLPYVK---------TMEG 283 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + + + + ++ ++ +A +V++ NP+ I+IG + + + + + Sbjct: 284 VVKEYKKQNPACVQAVSQFIKNLSMGIANIVSILNPEVIIIGGDILNYEIDIRQELKEKV 343 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGA 387 + + +P ++ Q + GA Sbjct: 344 K-RIVPF---DFDIKVAQLGEDASAIGA 367 >UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAB7_DICT6 Length = 375 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 91/397 (22%), Positives = 181/397 (45%), Gaps = 37/397 (9%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 + I N V ++ + GP SR +L+R+++L +I++IV E++E +++ E+ E Sbjct: 8 EYIGLYNKNLVLEILIKTGPKSRAELARISKLTKTAISEIVDELIEKNILVEIGKVETS- 66 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 RGR L + + L++ +S E + D S K+ + + K+D + Sbjct: 67 RGRRPTKLTINPD-LKILAIDLSGLEGRSGIVDASGKVEEDFYYPIKRKED------LFE 119 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT-GVP 189 ID ++ + + +I+I++PGII+ NG V + + L E L++ +P Sbjct: 120 LIDPLLKKY----KNIIAISISVPGIINKYNGEVILSVGL-NWRNFLLKEFLKERYPNLP 174 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 +YI+ D ++ ++E FG + + ++ + +G G+ +G+++ ++ EIGHT Sbjct: 175 IYIEKDTNSGLLSELWFGEGKKFNILFYLLFEKGIGLGIYYNGNIIEGFNNIEGEIGHTI 234 Query: 250 VDPY-GKRCYCGNHGCLETIASVDSILELAQ--LRLNQSMSSMLHGQPLTVDSLCQAALR 306 V+ + C+CGN GCLETIAS I E L +S+ S G Sbjct: 235 VNGDIAEICWCGNKGCLETIASFPKIQEKFSDFKLLEESLKSYNQGDK------------ 282 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGS--PLSKAA-DILFPVISDSIRQQA 363 D + + ++G LA V++ P+ I + +++ ++ ++ + + Sbjct: 283 -DPF----LEEIFRYLGISLANAVHIIAPEAICVAGNRGMTRNILNLFTEILKKEVDKYI 337 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL 400 I ++ N G + GA ++ Y L+ Sbjct: 338 FEYLKDKIYFYASPLGNDGLLIGAGILGFTNYFRELV 374 >UniRef50_C2BT73 Transcriptional repressor n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BT73_9ACTO Length = 442 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 156/390 (40%), Gaps = 21/390 (5%) Query: 7 PG-HIDQIKQTNAGAV-YRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 PG + ++ N + YR+I +SR DL+ L +++T+++ +L+ +++E Sbjct: 30 PGMRAESLRNHNLQLLTYRIITGSEVMSRADLAHETGLNRSTVTRLIEHLLDFGIIRE-G 88 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEE--SQELALKDDL 122 G GRP++ L + + R I + DL ++ E+ ++ Sbjct: 89 STRVGPSGRPSIMLTPARRTHGGIGAEVGRDYISACVMDLRGNIIAEQFDQVDVPAYSPQ 148 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 L ++ + +++ + Q L I GII + +H P + + L + Sbjct: 149 STLGKLATMVNELTSQIQHSGLSLCGITCGFSGIISSSTSNLHMSPHL-GWRNIDLEKHF 207 Query: 183 EQHTGVPVYIQ--HDISAWTMAE--ALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 + V + + + +AE A D I + + +G+ ++ DG + Sbjct: 208 RSKLHIEVPVDYQNTANLSALAESIARQKTGHELSDFIFISQNSAIGSALVLDGKVSSGL 267 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 EI H V K C CG GCL+ ++LE A L N + Sbjct: 268 HGWAGEIAHITVSDEDKPCDCGAVGCLDAYIDKANLLERAGLPANAPW-----------E 316 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 L + +G+ + + G ++GR L+ +NL + I++G L K + D Sbjct: 317 QLFASLHKGNAQVTETVRLCGRYLGRALSTYINLVDVTTIVLGGVLKKLLPYYEDALRDE 376 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAA 388 + ++AL + I ++ + ++ GAA Sbjct: 377 LTRRALCSNWMEIDLQESIVKEGSSLQGAA 406 >UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK90_MOOTA Length = 315 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 3/308 (0%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFFIRHQKKLE 144 L + + I L D++ K++ + A + +L RI + L Sbjct: 2 CLLGIDLGGTSIKAGLVDINGKILKKGQVPTGAGEGTTAVLKRIKNLARDLAGEQGLALG 61 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 L I I +PG +D G+VH P ++ L + L +PV I++D + E Sbjct: 62 ELEGIGIGIPGSVDVARGLVHLAPNLF-WRDFSLRDELAALLDLPVAIENDAHVAALGEM 120 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 GA RG ++ V I +G+G+I DG + H E+GH ++ G++C+CG HGC Sbjct: 121 WQGAGRGYTSLLMVTIGTGIGSGLIIDGRVHHGLFGYGAEMGHIKMVCDGRQCHCGGHGC 180 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHGQP-LTVDSLCQAALRGDLLAKDIITGVGAHVG 323 LET+AS ++++ + L SML +P L + AA GD LA +I ++G Sbjct: 181 LETLASATAMVKSFREYLAAGYPSMLSDRPELGAKEILAAAAGGDELAGRVIDEAACYLG 240 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 LA V L P+ I+IG ++A +++ I + + + V N Sbjct: 241 TALANAVLLVGPEAIIIGGGPAQAGEVILDPIRKHLAAAMGTWQLKQVPVLQAALGNDAG 300 Query: 384 MAGAALVK 391 + GAA + Sbjct: 301 IIGAAYLA 308 >UniRef50_C2CVT4 Transcriptional regulator n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CVT4_GARVA Length = 379 Score = 288 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 160/391 (40%), Gaps = 39/391 (9%) Query: 1 MVAENQPGHIDQI----KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLE 56 M+ + I + N ++ + +SR L R +L+ ASI+ +V EMLE Sbjct: 10 MINQLMTVSQKTIPADARINNRMLIFNYLFPKQILSRAMLVRKTKLSKASISTVVYEMLE 69 Query: 57 AHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGE-IFLALRDLSSKLVVEESQE 115 H++ E + RG+ L V+ W+ +++ +S+ I A+ +L ++ Sbjct: 70 DHILVESGQESKIERGKKGTLLEVDANYWNIITIDLSQPCLIQGAVVNLCGDILKRSEIS 129 Query: 116 LALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE 175 L D ++II + I I +PGI+D + G V R + + Sbjct: 130 LYKSTDAN-CEKIIEVCKTLINNSN---NHILGIGIAVPGIVD-DEGRVVRSSNLQ-WEN 183 Query: 176 MPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLL 235 + + E L +H P+ + HD ++ +AE FG G + I + + VGA ++ + ++ Sbjct: 184 INIKEELIKHFNCPIIVDHDTNSALLAERFFGN--GVPNTIFIQLSLGVGASILINDAII 241 Query: 236 HAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL 295 ++S EIGH VDP G C CG GCLET S +++ + Sbjct: 242 TGINNSAGEIGHITVDPQGPDCSCGKKGCLETYISAETLHRKMFTSNRKP---------- 291 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 +DI+ G ++G+ L +NL + ++I P + Sbjct: 292 ----------------EDILAEAGNYLGKALTTTINLLDLTDVVIYGPSDIVNKVFISST 335 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAG 386 +I++ + +V +N T+ G Sbjct: 336 EKAIQEYGPYSPKHPCTVRRCTCNNDITLIG 366 >UniRef50_D2B0X7 ROK family protein n=2 Tax=Actinomycetales RepID=D2B0X7_STRRD Length = 391 Score = 288 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 154/385 (40%), Gaps = 25/385 (6%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q D ++ N G V + + GP++R L+ + L +++K+V ++L A +V E Sbjct: 3 QAVRHDSMRARNLGVVLGEVRRSGPITRAALAEITGLTKTTVSKMVGDLLGAGMVTEAGA 62 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL- 124 G RGRP + + L L I+ + + DL+ + + +Q + + P+ Sbjct: 63 LRDGERGRPGTAVSLSGHRVAALGLEINVDYLSACVVDLTLSVRLRRTQAVDNRAASPVE 122 Query: 125 -LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 L + + + + + + +PG +D G++H P ++ +G+ L Sbjct: 123 TLAHLQELAHRAVDEARSEGLAIAGSTLAVPGPVD--GGLLHAAPNL-GWHDVRVGDLL- 178 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 PV ++++ + + E FG+ G D + V + VGAG++ G L Sbjct: 179 ---DFPVAVENEANLAALGELWFGS--GPSDFLHVSGEIGVGAGLVVGGALFRGARGLAG 233 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E+GH V P G C CG GCLE A +++L A L V L + Sbjct: 234 ELGHVIVSPDGPTCRCGGRGCLEQYAGQEALLRAAGLD--------------GVPELVER 279 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 G A G +G L V+L +P +++G + + +++ + Sbjct: 280 LQAGTPGALRACERAGQALGVALTSAVHLMDPGTVVLGGIFAPLFPWIHGPARETMTARL 339 Query: 364 LPAYSQHISVESTQFSNQGTMAGAA 388 + ++ GAA Sbjct: 340 ARMRHAVPELTVSRLGGDAASLGAA 364 >UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (NagC/XylR) family n=1 Tax=Vibrio splendidus 12B01 RepID=A3UNW3_VIBSP Length = 405 Score = 288 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 73/388 (18%), Positives = 161/388 (41%), Gaps = 15/388 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + +D ++ N + + G SR ++S+L L A++T+ ++ ++E L+ Sbjct: 1 MRSGLGVSLDDVQNHNKRVILNALHNSGSCSRKEISQLVGLDQATVTRAIKPLIEQGLIV 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD- 120 E +++A RGR ++ L T+ +S+RI R + DL+ + + + + Sbjct: 61 ETGVRKAA-RGRSSIYLGFNTQHLRIVSVRIQRTNFSIDTYDLNGVSLTNVVKPINTDNS 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L++ + + + + IA+ +PG ++ + M ++ +++ Sbjct: 120 PEELIEYLTKQVSDVLKEQEC---DVLGIAVAMPGPFLEQDNKIMLMTDAKNWQDIDFIS 176 Query: 181 ALEQHT-GVPVYIQHDISAWTMAEALFGASRGARDVI-QVVIDHNVGAGVITDGHLLHAG 238 + + P+Y HD +A S V+ V + VG+G++ +G + H Sbjct: 177 HMREQFPDYPIYAGHDAKLAALAVWRQLQSTYEASVLLYVSLGQGVGSGLVIEGQVYHGS 236 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + EIGHT ++ G +C CGN GCLE +S +++E + + + + Sbjct: 237 LGTAGEIGHTSINFQGPQCKCGNLGCLELYSSTTALVERYKQEASLVSA--------DFE 288 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + A + A + + + + L +N NP ++IG L++ + + Sbjct: 289 MVVNAFHDRESAAINAVDYLAKCLAHGLVNNINQLNPDLVVIGDELTQLGADFLSRVKEY 348 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAG 386 + LP + +I + + G Sbjct: 349 TYRLLLPDLASNIELVLDESDEDLVHKG 376 >UniRef50_C0W864 Rok family transcriptional regulator n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W864_9ACTO Length = 401 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 91/389 (23%), Positives = 170/389 (43%), Gaps = 15/389 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 ++ +N + R + P SR +L R L+ A+++ +V E+ LV E +GN G Sbjct: 1 MRISNMSLILRHLQAGPPCSRTELVRQTGLSKATVSTLVAELCARGLVSEGAPDMSGNVG 60 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL--ALKDDLPLLDRIIS 130 RP+ L + +A + I + L + DL+ ++V +ES + + ++D++ + Sbjct: 61 RPSTALQIAAQAVAGVGAEIGIDSLLLTVVDLAGRVVTQESCLIADPARSFTAVIDQLSA 120 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT--GV 188 + + + + + + + G +D +G V + PL EAL + Sbjct: 121 LLTAQLEKLRSQGVAVLEVVVAQTGALDYTSGTVRFSSSL-GWHDAPLLEALRSALARDL 179 Query: 189 P-------VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 P + +++D +A A +G R ++ + VGAG+I DGHLL S Sbjct: 180 PEDAALPELAMENDAKLAALAAYGDYARKGVRHLLYLSGGEGVGAGIIADGHLLRGWYGS 239 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+GH V+ G+ C CG GC ET+ + S+ A + + L Sbjct: 240 TGEVGHMPVETDGQVCRCGRRGCWETLIGLHSL--TAIYPPQDPVHDDARSLVSRIAMLR 297 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + GD + + + + R LAI+V++ NPQ I++ L+ D+L + S+ Sbjct: 298 ERFDAGDQVLIERLAQAQHDLERGLAILVDVLNPQVIVLSGWLAAFDDVLLAPTAASLEA 357 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALV 390 + L + + +++ GAALV Sbjct: 358 RRLDD-RPAVHLLASRLGPWAPSLGAALV 385 >UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG9_9FIRM Length = 322 Score = 287 bits (736), Expect = 4e-76, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 138/321 (42%), Gaps = 12/321 (3%) Query: 84 AWHYLSLRISRGEIFLALRDLSSKLVVEESQ---ELALKDDLPLLDRIISHIDQFFIRHQ 140 + +YL + I + AL K+V + + + + +D R Q Sbjct: 2 SKYYLIMDIGGTKTTGALFTEDGKIVDDYTYVSKSPTFEGKEAVYQNTRGVLDHIVERFQ 61 Query: 141 KKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWT 200 L+ + I + PG +D+ GI+ P K PL E L +PV + +D + Sbjct: 62 VDLKDVLGIGVGCPGPLDSRKGIIIHAPLMR-WKNFPLVERLSHDFQLPVALDNDGNLGA 120 Query: 201 MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCG 260 +AE G ++G +V+ + + G G++ +G + H E+GH +DP G C CG Sbjct: 121 LAEQRCGVAKGLDNVMYMTVSTGCGGGLVINGEIYHGKHDGAGEVGHMSIDPEGLDCPCG 180 Query: 261 NHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLLAKDI 314 GC E AS ++ + + SM+ + + L +AA +GD A Sbjct: 181 GKGCFELYASGTAMNRRMREDMAAGKKSMVFELAQHDPKKIEGRLLTEAAEKGDTYALAF 240 Query: 315 ITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVE 374 ++G ++ + NL++P+ +++G ++KA + IR + L S+ Sbjct: 241 FKQQAYYLGVGISNLFNLYDPEVLVLGGGVTKAKAFYHDEMMRVIRSRCLQPVEDD-SIR 299 Query: 375 STQFSNQGTMAGAA-LVKDAM 394 + +++ + GA L+KD + Sbjct: 300 YSVMNDRVVLYGAYHLIKDKL 320 >UniRef50_B9JL48 Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JL48_AGRRK Length = 345 Score = 287 bits (736), Expect = 4e-76, Method: Composition-based stats. Identities = 85/307 (27%), Positives = 142/307 (46%), Gaps = 6/307 (1%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLER 145 L+ + E+ AL D L+ + + + R I + + L Sbjct: 4 VALAFDLGGTELRAALVDEEGNLLSFSAVPTQAAEGPDAVVRQIEVLAATVLAKTPDLLP 63 Query: 146 LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEAL 205 + I I PG +D E G+V P E+PL + L +PV +++D +A + E Sbjct: 64 I-GIGIGAPGPLDPEAGVVIAAPTLTGWNEVPLADILSSRFQLPVRLENDANAAAVGEWR 122 Query: 206 FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCL 265 +GA RGAR ++ V + +G GVI D +LH EIGH + G+RC+CG GC Sbjct: 123 YGAGRGARSIVFVTVSTGIGGGVIADSRILHGRRGLAAEIGHMTITNEGERCFCGAVGCF 182 Query: 266 ETIASVDSILELAQLRLNQSMSSMLH----GQPLTVDSLCQAALRGDLLAKDIITGVGAH 321 E +AS ++ A R +S SML +T + AA GD LA +++ Sbjct: 183 EAVASGTALGRQATARTRRSDGSMLRKLSANADVTGRHVVDAARNGDALALELLNAEARW 242 Query: 322 VGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQ 381 +G +++L++P +++G +S D+L I +I +A+PAY + + + + Q Sbjct: 243 LGIGFTNLLHLYSPDVLVMGGGISHGFDLLHDTIMATICDRAMPAY-RDVPIVAAQLGRH 301 Query: 382 GTMAGAA 388 + GAA Sbjct: 302 AGLIGAA 308 >UniRef50_D1W4V6 ROK family protein n=2 Tax=Prevotella RepID=D1W4V6_9BACT Length = 400 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 171/386 (44%), Gaps = 11/386 (2%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 K N + + + + ++S+ ++ + TKI+ ++ V ++ + GR Sbjct: 13 KPDNYKTILKYLMLHDGCTIPEISKHIGISVPTTTKIITNLMSKGFVVSKGKRDQTH-GR 71 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEE-SQELALKDDLPLLDRIISHI 132 + T++ ++L + S + +AL D S +V E+ L++ LD ++ + Sbjct: 72 LPTVYGLSTDSGYFLGIDPSYDSLAMALCDFSGNIVFEKNKIPFQLENTQQCLDTLLDLV 131 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 +++ + E + ++ + G ++ G+ + D PL + + G+P I Sbjct: 132 NEYIGSLDIQKESILHASMNVSGRVNPFTGVSYS---IFDFLNQPLAKYISDQIGIPTCI 188 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 ++D A T E L G + A++V+ V + G+I G + + S E GH + Sbjct: 189 ENDTRAMTFGEYLVGCCKSAKNVLFVNASWGIAIGIIVGGKIYYGKSGFSGEFGHVKAYD 248 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTVDSLCQAALR 306 C CG GCLET S ++L + + S+L + LT+ + A + Sbjct: 249 NEVLCRCGKKGCLETEVSGMALLRETVKNVLKGKRSILSDKVLKENKELTLSDVLYAIQK 308 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 D L + + + +GR LA M+N+FNP ++IG LS+ D + + +I++ +L Sbjct: 309 EDTLCIETLQKIADQLGRNLAGMINIFNPDMLIIGGDLSQTGDYITQPVQMAIKKYSLNI 368 Query: 367 YSQHISVESTQFSNQGTMAGAALVKD 392 ++ V ++ + + GA +V Sbjct: 369 VNEDSEVVTSTLRERAGVVGACMVAR 394 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selen... 434 e-120 UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyt... 433 e-120 UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter Re... 428 e-118 UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacteriu... 426 e-118 UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU 426 e-118 UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostri... 424 e-117 UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n... 424 e-117 UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteoba... 423 e-117 UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillu... 423 e-117 UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 421 e-116 UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acid... 417 e-115 UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 Re... 413 e-114 UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix oreni... 412 e-113 UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n... 411 e-113 UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D... 411 e-113 UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=... 409 e-113 UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydi... 403 e-111 UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 402 e-110 UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. ora... 400 e-110 UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix oreni... 399 e-109 UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammapro... 398 e-109 UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenu... 397 e-109 UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D... 397 e-109 UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n... 397 e-109 UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp... 396 e-108 UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp... 395 e-108 UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus ... 395 e-108 UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID... 394 e-108 UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaprot... 391 e-107 UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I... 391 e-107 UniRef50_Q9K992 Transcriptional repressor of the xylose operon n... 390 e-107 UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n... 390 e-107 UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibir... 389 e-107 UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridia... 389 e-106 UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium ha... 387 e-106 UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=My... 385 e-105 UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_... 385 e-105 UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1... 385 e-105 UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID... 384 e-105 UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevi... 381 e-104 UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepI... 381 e-104 UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon auranti... 381 e-104 UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR... 380 e-104 UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2I... 377 e-103 UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterale... 375 e-102 UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp... 375 e-102 UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 373 e-102 UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V... 371 e-101 UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans... 371 e-101 UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=... 370 e-101 UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobact... 369 e-101 UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter w... 369 e-100 UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_A... 368 e-100 UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon auranti... 368 e-100 UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridiu... 367 e-100 UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acid... 366 e-100 UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM... 366 e-100 UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostri... 363 6e-99 UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ9... 363 7e-99 UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 T... 363 8e-99 UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obsc... 360 4e-98 UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida f... 360 7e-98 UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiph... 360 7e-98 UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=S... 359 9e-98 UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Sa... 358 2e-97 UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=... 357 4e-97 UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK... 357 4e-97 UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales Re... 357 5e-97 UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geotherma... 356 6e-97 UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS61... 356 9e-97 UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola ba... 356 1e-96 UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N... 356 1e-96 UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 355 2e-96 UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales ... 354 3e-96 UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 ... 354 4e-96 UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp... 354 4e-96 UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans... 353 8e-96 UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n... 352 2e-95 UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifi... 351 2e-95 UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentan... 351 3e-95 UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella for... 351 3e-95 UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=A... 351 3e-95 UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminoc... 351 3e-95 UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Str... 351 3e-95 UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=... 350 4e-95 UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_... 350 6e-95 UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=... 350 7e-95 UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepI... 348 2e-94 UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C... 348 2e-94 UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM... 348 2e-94 UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metallir... 348 2e-94 UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168... 348 2e-94 UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM... 348 3e-94 UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 348 3e-94 UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n... 347 3e-94 UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=N... 347 4e-94 UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n... 347 4e-94 UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliph... 347 5e-94 UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytoferm... 347 5e-94 UniRef50_C1D0G6 Putative transcriptional regulator, NagC family ... 346 1e-93 UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID... 346 1e-93 UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium R... 346 1e-93 UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum ... 346 1e-93 UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyc... 345 2e-93 UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia g... 345 2e-93 UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterale... 345 2e-93 UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus ... 344 3e-93 UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepI... 344 3e-93 UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevi... 344 4e-93 UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea b... 343 7e-93 UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter... 343 9e-93 UniRef50_C9YT50 Putative ROK family transcriptional regulator n=... 343 1e-92 UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5R... 342 1e-92 UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostri... 342 1e-92 UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiph... 342 2e-92 UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae ... 342 2e-92 UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=S... 341 2e-92 UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus fae... 341 2e-92 UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobact... 341 3e-92 UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Mi... 341 4e-92 UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsul... 341 4e-92 UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiph... 340 6e-92 UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitan... 339 7e-92 UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n... 339 1e-91 UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobac... 339 1e-91 UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 339 1e-91 UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistip... 338 2e-91 UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5E... 338 2e-91 UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6L... 338 2e-91 UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostri... 338 3e-91 UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9... 337 4e-91 UniRef50_B2GIX7 Putative NagC family transcriptional regulator n... 337 4e-91 UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter w... 336 7e-91 UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostrid... 336 8e-91 UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bif... 336 8e-91 UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=A... 336 1e-90 UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulol... 335 1e-90 UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerot... 334 3e-90 UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curviba... 334 3e-90 UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=M... 334 3e-90 UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostri... 334 4e-90 UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix oreni... 333 7e-90 UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB 333 9e-90 UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus ... 332 1e-89 UniRef50_B2V1I0 Putative transcriptional repressor of the xylose... 332 1e-89 UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetal... 332 1e-89 UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C... 332 1e-89 UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DS... 332 2e-89 UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar... 331 3e-89 UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=... 331 3e-89 UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminoc... 331 4e-89 UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis... 330 5e-89 UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=... 330 6e-89 UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae... 330 6e-89 UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=M... 329 1e-88 UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp... 328 2e-88 UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavid... 328 2e-88 UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD 328 2e-88 UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Re... 328 2e-88 UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=... 328 3e-88 UniRef50_Q185Y3 Putative regulator of a specific sugar metabolis... 328 3e-88 UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenen... 328 3e-88 UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacteriu... 327 4e-88 UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n... 327 4e-88 UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 327 5e-88 UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID... 327 6e-88 UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=S... 326 8e-88 UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID... 326 9e-88 UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versat... 326 1e-87 UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile R... 326 1e-87 UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerot... 325 1e-87 UniRef50_D1NUM3 Transcriptional repressor in the Rok family prot... 325 1e-87 UniRef50_D2BD51 Transcriptional repressor of the xylose operon n... 325 2e-87 UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostri... 325 2e-87 UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B... 325 2e-87 UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID... 324 2e-87 UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces R... 324 3e-87 UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=... 324 4e-87 UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter w... 324 4e-87 UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 323 5e-87 UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6... 323 6e-87 UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillu... 323 6e-87 UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enteroc... 323 7e-87 UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM... 323 9e-87 UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter Re... 323 1e-86 UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC ... 322 1e-86 UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acid... 322 2e-86 UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiph... 321 2e-86 UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium... 321 2e-86 UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Strepto... 321 3e-86 UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiph... 321 3e-86 UniRef50_C6LD35 Putative xylose repressor n=1 Tax=Bryantella for... 321 4e-86 UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O... 321 4e-86 UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C... 321 4e-86 UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulol... 321 4e-86 UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reine... 321 4e-86 UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=... 320 5e-86 UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus Rep... 319 8e-86 UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepI... 319 9e-86 UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium ros... 319 9e-86 UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacteriu... 319 1e-85 UniRef50_UPI0001B509AF ROK family protein n=2 Tax=Streptomyces h... 319 1e-85 UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acn... 319 1e-85 UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c Rep... 319 2e-85 UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Mic... 318 2e-85 UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp.... 318 2e-85 UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=... 318 2e-85 UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH 318 2e-85 UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A... 318 3e-85 UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=C... 318 3e-85 UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI 318 4e-85 UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiph... 317 4e-85 UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidi... 317 4e-85 UniRef50_B5GCP5 Transcriptional regulator n=2 Tax=Streptomyces R... 316 8e-85 UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostri... 316 1e-84 UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia... 316 1e-84 UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenu... 314 4e-84 UniRef50_A5G397 ROK family protein n=7 Tax=Geobacter RepID=A5G39... 314 5e-84 UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepI... 314 5e-84 UniRef50_C6B6F2 ROK family protein n=8 Tax=Rhizobium RepID=C6B6F... 314 5e-84 UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (N... 313 6e-84 UniRef50_C2CVT4 Transcriptional regulator n=1 Tax=Gardnerella va... 313 7e-84 UniRef50_C3QC45 ROK family transcriptional repressor protein n=1... 313 8e-84 UniRef50_A8F699 ROK family protein n=1 Tax=Thermotoga lettingae ... 313 8e-84 UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Pr... 313 9e-84 UniRef50_Q1J318 ROK domain protein n=2 Tax=Bacteria RepID=Q1J318... 313 9e-84 UniRef50_C7R070 ROK family protein n=2 Tax=Micrococcineae RepID=... 313 1e-83 UniRef50_C0W4H3 ROK family protein n=1 Tax=Actinomyces urogenita... 313 1e-83 UniRef50_D2B0X7 ROK family protein n=2 Tax=Actinomycetales RepID... 313 1e-83 UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipart... 312 1e-83 UniRef50_UPI0001789593 ROK family protein n=1 Tax=Geobacillus sp... 312 1e-83 UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=... 312 1e-83 UniRef50_B9JL48 Transcriptional regulator protein n=1 Tax=Agroba... 312 2e-83 UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacte... 312 2e-83 UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum D... 312 2e-83 UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1... 312 2e-83 UniRef50_D1AY92 Glucokinase, ROK family n=4 Tax=Bacteria RepID=D... 311 2e-83 UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X... 311 3e-83 UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiph... 311 4e-83 UniRef50_C8XDB9 ROK family protein n=1 Tax=Nakamurella multipart... 310 7e-83 UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID... 310 7e-83 UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5... 309 9e-83 UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_... 309 9e-83 UniRef50_C2BRU2 Transcriptional regulator n=3 Tax=Mobiluncus Rep... 309 9e-83 UniRef50_C3QK14 ROK family transcriptional repressor n=13 Tax=Ba... 309 1e-82 UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus ... 309 1e-82 UniRef50_C0W864 Rok family transcriptional regulator n=1 Tax=Act... 309 1e-82 UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum D... 308 2e-82 UniRef50_B0MNG8 Putative uncharacterized protein n=2 Tax=Clostri... 308 2e-82 UniRef50_A3TZT8 ROK family protein n=1 Tax=Oceanicola batsensis ... 308 2e-82 Sequences not found previously or not previously below threshold: >UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZR7_9BACI Length = 404 Score = 434 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 196/402 (48%), Gaps = 9/402 (2%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G +K N V +I + GP+SR D+S+ A L P ++T IV ++L+ LV+ Sbjct: 1 MVQGMTGSFRLMKSLNRSLVINIIRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVK 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-D 120 E + GR V L + + + + + G+I + L +L+++L+ + + L Sbjct: 61 EGRTGASKG-GRRPVLLSINYNNHYVIGVDVGTGQIRVGLSNLNAELLNRKKETLPAGIK 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + + +D +++ I I + GI+D E GI P + D E+PL E Sbjct: 120 AGEFMTILYRLVDDMITNSDVSRDKIVGIGIGMHGIVDEEKGISIYAPHF-DFGELPLKE 178 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 LE +PV +++D +AE FG +R +++ + + +GAGVI +G + Sbjct: 179 RLEARYEIPVKVENDARCSAIAEMWFGDTRANPNLVFINVGDGIGAGVILNGQIHRGHHH 238 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-----QPL 295 E+GH VD G++C CG++GCL T+AS I E A + S+ L + + Sbjct: 239 IAGELGHMIVDLNGRQCTCGSYGCLHTVASGIHIRERAIHEITLGRSTALREMRENKEDI 298 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 + + +AAL GD A+++ G +G + ++N NP +I++G + KA + + Sbjct: 299 DGEVIYEAALHGDEFAEELFAQAGRFLGLAVTNVINFLNPDQIVLGGGVMKAGAFVMKPL 358 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYN 396 +++ ++AL ++ + + + + GA +L+ ++ Sbjct: 359 VETVNRRALTDDARKTEITVSSLGSHSALLGAVSLILHDVFE 400 >UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQJ9_BACS4 Length = 419 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 94/404 (23%), Positives = 204/404 (50%), Gaps = 10/404 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M Q G + +K N A+ +I GP+SR +++++ +L P ++ IV E++++ +V Sbjct: 1 MTFIPQTGSFEGMKSLNKTAILNIIRLKGPISRAEIAKMTKLTPPTVGSIVGELIDSKMV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LK 119 E + + GR + L + +++ + + +R I + L K+ ++L+ Sbjct: 61 IEETGESKSHGGRKPIMLTINASSYYVIGIYGAREIIHTVIATLDGKISYSNEEKLSTPP 120 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +D + + +++ + + K ++ I + + G++D + GI P ++ +P+ Sbjct: 121 TKDEYIDLLKNGVEKVLQQKRIKQNKVLGIGVGMHGLVDPQKGISIFSPHLH-IENIPIK 179 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 + LE +PV + +D+ +AE+ +G + + + + + +G+G++ +G + Sbjct: 180 QELESAFDIPVLVDNDVRTLALAESWYGEGKDISNFVCLSVGLGIGSGIMLNGEIYTGQY 239 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH------GQ 293 S EIGHT VD G RC CGN+GCLE AS +I+ + L S++++ Sbjct: 240 HSAGEIGHTVVDINGPRCQCGNYGCLEAYASELAIISRVKKGLRLGRSTIINDWIKETDS 299 Query: 294 PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA-ADILF 352 LT++ + AA +GD +++ G +G +A ++N+ P K+++ + +A + L Sbjct: 300 QLTIEMVFDAAEKGDAFVLEVLEETGRFLGIAVANLINILTPSKVILEGRIFEAGGNTLL 359 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMY 395 + + I++ +L +YS +S+ ++ +G + GA LV +Y Sbjct: 360 SPLKEIIKKSSLRSYSDDVSIVTSDLGKKGMVIGAFTLVLKELY 403 >UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter RepID=B0KBZ3_THEP3 Length = 408 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 97/397 (24%), Positives = 194/397 (48%), Gaps = 6/397 (1%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G+ + IK N V I GP+SR D+S+ L +++T IV E+ +LV E+ Sbjct: 4 RIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELENQNLVHEVGE 63 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPL 124 ++ GR + L + + ++I + AL +L S+++ + + + Sbjct: 64 ADSTG-GRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSNTV 122 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L+ ++ +I++ + + L I + + G++D + G + + + +G LE Sbjct: 123 LNMVVENIEKLITKIPYN-KNLMGIGVAVSGLVDQQKGKLIYSG-MLNWSNVEIGNILEN 180 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 VPVYI +D++A+T+AE +G R + I V +G+G++ + L E Sbjct: 181 KFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAGE 240 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH-GQPLTVDSLCQA 303 IGH + G++C CG GCLE AS D I++ + + S + + L+++ + + Sbjct: 241 IGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYEY 300 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD+LA D++ ++G L ++NL NP I++ A DI+ PVI+D ++ Sbjct: 301 AKEGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVKNNF 360 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVK-DAMYNGSL 399 + + + ++ ++ ++G + GA+ + ++ L Sbjct: 361 FKMHEKKVQIKVSELGDEGWVIGASTLAISKLFEIPL 397 >UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67NW4_SYMTH Length = 403 Score = 426 bits (1096), Expect = e-118, Method: Composition-based stats. Identities = 108/400 (27%), Positives = 193/400 (48%), Gaps = 11/400 (2%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 + I+ N V RL+ G +SR DL+ L +++ +V E+LE V+E+ E+ Sbjct: 5 PELIRAINKQRVLRLVRSAGAMSRADLAERTGLTRPTVSAVVAELLEEGWVEEIGTGESS 64 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRII 129 GRP + L A + + G + L DL+ + Q + +D L +D++ Sbjct: 65 G-GRPPILLRFNPRARWVIGAELGAGHVRAVLADLAGNVFHRFKQRVESRDPLIEVDQLE 123 Query: 130 SHIDQFFIRHQK--KLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 + + + + + I + G+ID E G+ P Y+ V+++P+ L++ Sbjct: 124 RAVRYLLDQTPRYGPPTPVAGVGIGITGVIDPEEGVWRYSPHYQ-VRDLPVAPMLQERLS 182 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +PV+I++D A E FGA++G ++ + + +GAG+I DG L EIGH Sbjct: 183 LPVWIENDARAMAWGERSFGAAQGVDNLAFIRVGVGLGAGIIIDGRLYGGAHQGAGEIGH 242 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLC 301 V G RC CG+ GCLET+ S +I A R+ Q +++ + ++ Sbjct: 243 IMVKERGLRCRCGSDGCLETVGSAIAIARRAVQRMAQGEETLIRELCGGDPSKVIATTVI 302 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 +AA GD +A++I++ G +G + M+NL NP ++IG S+A D L + + + Sbjct: 303 EAADAGDRVAQEILSEAGRFLGIGIGAMINLLNPAMVIIGGGTSRAGDYLIEPLRQAALE 362 Query: 362 QALPAYSQHISVESTQFSNQGT-MAGAALVKDAMYNGSLL 400 + LPA + + + T+ + GAALV + ++ L Sbjct: 363 RTLPALRERVKIVRTELGEDAGPLGGAALVIEELFRTPTL 402 >UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU Length = 384 Score = 426 bits (1096), Expect = e-118, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 176/390 (45%), Gaps = 14/390 (3%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 +K+ N + + I + P+SR LS + L ++++ V +++ +V E+ + Sbjct: 4 ADQTFVKKVNQKLLLKEILKNSPISRAKLSEMTGLNKSTVSSQVNTLMKESMVFEIGQGQ 63 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 + GR V LV +A + + + + I L DL +V+++ + L D Sbjct: 64 SSG-GRRPVMLVFNKKAGYSVGIDVGVDYINGILTDLEGTIVLDQYRHLESNSPEITKDI 122 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 +I I F + + L I I +PG+ID + IV P + +++ L ++++ Sbjct: 123 LIDMIHHFITQMPQSPYGLIGIGICVPGLIDKDQKIV-FTPN-SNWRDIDLKSSIQEKYN 180 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 VPV+I+++ +A E +FGA++ ++I V I +G GVI + HL S E+GH Sbjct: 181 VPVFIENEANAGAYGEKVFGAAKNHDNIIYVSISTGIGIGVIINNHLYRGVSGFSGEMGH 240 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 +D G +C CGN GC E AS ++L+ Q + L+ + A Sbjct: 241 MTIDFNGPKCSCGNRGCWELYASEKALLKSLQ----------TKEKKLSYQDIINLAHLN 290 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D+ + + G ++G L ++N FNPQ +++ + + ++ ++ + + + Sbjct: 291 DIGTLNALQNFGFYLGIGLTNILNTFNPQAVILRNSIIESHPMVLNSMRSEVSSRVYSQL 350 Query: 368 SQHISVESTQFSNQGTMAG-AALVKDAMYN 396 + + G +++V D + Sbjct: 351 GNSYELLPSSLGQNAPALGMSSIVIDHFLD 380 >UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ47_9CLOT Length = 401 Score = 424 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 93/397 (23%), Positives = 174/397 (43%), Gaps = 11/397 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + N AV I P+ R +++RL L+ ++ KI E E+ L+ E Sbjct: 2 PKVDKSIVGIHNKEAVINTIRDNSPIFRAEIARLTGLSIPTVMKITDEFKESGLIYESGK 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPL 124 + + G+P L +A + + + + + L DLS+K+++ E + Sbjct: 62 RTSE-VGKPPKLLSFVPDAKYIIGVDVGTTHVGAVLMDLSAKILLREWAPTHDGHTFPQV 120 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L++ I I + + ++ I + +PG+I E G + P E L++ Sbjct: 121 LEQTIQCIQKILDASSEYAGKILGIGVGVPGLISVETGKIILSPAI-GWHEGNFLAPLKE 179 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +PV + + + A M E FGA RG + + + + +G+ ++ + + + E Sbjct: 180 RFRLPVVVDNVVRAMAMGELWFGAGRGLENFFCIGLGYGIGSSIVIGKQIYSGSTGTSGE 239 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTVD 298 GH +D G C CG +GCLE IAS ++I + A+ ++ +SM+ + Sbjct: 240 FGHMTIDKSGPLCDCGCYGCLEAIASANAISKQARFAISNGANSMMFDIIHGNLNDINAK 299 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + AA GD LA I+ V ++G ++ ++NL +PQ I++G +S+A D L + D Sbjct: 300 VVFDAAKAGDSLANTIVNQVTVYLGIAISNVINLLDPQLIILGGGVSQAGDFLLNPLLDE 359 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 + + LP + + + GAA Y Sbjct: 360 VSRHVLP--VKEPHIVISSLGEDAVAIGAATFLLKEY 394 >UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n=2 Tax=Bacillus RepID=Q9KDW7_BACHD Length = 407 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 109/402 (27%), Positives = 203/402 (50%), Gaps = 10/402 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 G +K N + I GP+SR D+++ +L P ++T IV E++E LV+E Sbjct: 1 MPVAGSFQLMKSMNRSLILNTIRLDGPISRADIAKKTKLTPPTVTNIVAELIEEKLVRES 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 ++ E+ GR + L ++ + + L + + L DL+ ++ + + EL+ Sbjct: 61 KMGES-RGGRKPILLTIDAKNSFVIGLDVGGYRVRAVLTDLNGEVEGQTTVELSSDLTEE 119 Query: 124 LL-DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 L D++I F + + + +++ I I + GI+D ++G+ P ++ + + L Sbjct: 120 TLIDQLIKITVTLFEQCKMQKDKVIGIGIGMHGIVDHQSGMAVFAPNFQ-LTNIDLKTPF 178 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E VPV++++D A + E FG +G VI V + +GAG++ + L H Sbjct: 179 ESTFDVPVFVENDARALALGETWFGNGQGIDHVICVNVGVGIGAGIVLNKRLFHGVHGIA 238 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLT 296 EIGHT VD +GK+C CGN+GCL+T+A + + E A + +ML ++ Sbjct: 239 GEIGHTTVDIHGKKCTCGNYGCLQTVAGGNMLKERAIHDIASGRKTMLLEKVEGDMDRIS 298 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + + Q AL GD L+ +I+ G ++G + ++N NP +I++G +SKA D + + Sbjct: 299 GEIIHQCALAGDPLSIEILEEAGKYLGIGITNIINFINPDRIIVGGGVSKAGDFVLEPLR 358 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNG 397 ++++AL A ++ V + + GT GA LV + ++ Sbjct: 359 KMVKERALTAKARETEVVTAELGEWGTAIGAVTLVLEDLFAP 400 >UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteobacteria RepID=Q7MLY6_VIBVY Length = 435 Score = 423 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 187/406 (46%), Positives = 286/406 (70%), Gaps = 2/406 (0%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + QPGHID IKQ NAG VY+LID GP+SRIDLS+ ++LAPASITKI RE++EAHLV Sbjct: 31 MYMAQPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKITRELIEAHLVH 90 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E ++EA +RGRPAVGL V W +LS+R+ RG + +AL +L +++++ ++ +D Sbjct: 91 ETTVQEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHERDQ 150 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +L R++ I++FF + +L+R+TSIAITLPG++++E GIV +MP Y +V+ + LG Sbjct: 151 DDVLARLLHEIEEFFQTYADQLDRVTSIAITLPGLVNSEQGIVLQMPHY-NVENLALGPE 209 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 + + TG+PV+I +D AW +AE LFG S+G + + + I H +GAG+I DG +L + Sbjct: 210 IYKATGLPVFIANDTRAWALAEKLFGHSQGNENSVLISIHHGLGAGIILDGRVLQGRHGN 269 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-QPLTVDSL 300 + E+GH Q+DP GK C+CGN GCLET+AS +I E R+ SS+L + +T++S+ Sbjct: 270 IGELGHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEELEDVTIESI 329 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 C+AA GD LA D+I +G ++G +AI++NLFNP+K+LIG +++A ++L+P I I Sbjct: 330 CEAAANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIE 389 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 +Q+LP Y Q + + ++F Q TM GAAL+K A+Y+G LL+++++G Sbjct: 390 EQSLPVYHQDLELVESRFYKQATMPGAALIKQALYDGLLLMKVVEG 435 >UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65CW6_BACLD Length = 390 Score = 423 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 103/394 (26%), Positives = 190/394 (48%), Gaps = 10/394 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q G +K N + I P+SR ++++ ++ P +++ IV+E++ LV+E + Sbjct: 2 QRGTFQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKESTL 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPL 124 + GR L + T A++ + + + L DL+ ++ S L + Sbjct: 62 GRSSG-GRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERF 120 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++ + + R + E++ I I + G++D E G+ P ++ +P+ + LEQ Sbjct: 121 MEVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMSRIAPIL-NLTNIPIKDVLEQ 179 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 + V +++D A + E+ FG A + V I VGAG++ +G L H E Sbjct: 180 EFNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAGE 239 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 +GH +D G++C CGN GCL+TI S +I E + RL +S S LT L + A Sbjct: 240 LGHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDS------LTAKDLFEMA 293 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 G ++ G +G L ++L NP KI++G + K + P I ++I+Q+AL Sbjct: 294 ENGCQTCIELFQETGVIIGIGLTNFIHLVNPGKIVLGGGVMKGGRFILPAIRETIQQKAL 353 Query: 365 PAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNG 397 A ++ V T+ ++ T+ GA +L+ +++ Sbjct: 354 TAEARQTEVTITKLGDEATLYGAVSLLLAELFDP 387 >UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1T9_PAESJ Length = 387 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 95/394 (24%), Positives = 185/394 (46%), Gaps = 14/394 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + G + IK+ N V + + P+SR +S L L A+++ +V++++++ LV Sbjct: 1 MKVTTTGDLTLIKKINTSIVLEAVLKQAPLSRAQISELTGLNKATVSNLVQDLIDSDLVV 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E+ E+ GR V L+ +A + + + + I L DL ++ E + L Sbjct: 61 EIGPGESSG-GRKPVMLLFNGKAGYAVGIDLGVNYIRGVLADLEGNVIAERKRSLKKHQL 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L ++ I++ + + I I +PGI+D + G + P + + + L + Sbjct: 120 EFTLKELVQCIEELIGKAPASPYGIVGIGIGVPGIVD-DQGSILFAPNL-EWRHVELQQM 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE+ +PV I ++ +A E +G RG I V + +G G+I + L + Sbjct: 178 LEEQFQLPVTIDNEANAGAQGEQKYGIGRGIAHQIYVSVGIGIGTGIILNKELYKGATGF 237 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+GH ++ GK C CGN GC E AS +++LE A +++ L Sbjct: 238 SGELGHLSIEYNGKPCRCGNEGCWELYASENALLEQAAPLGFD-----------SLEDLL 286 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 AA G+ + + +G ++G ++ +VN+FNP ++IG+ +S+A L + S+ + Sbjct: 287 DAAEAGNEEVRALFYKIGEYMGAGISNIVNVFNPDVVIIGNRMSRAKTWLEEAVQSSVTR 346 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 + LP + + + + + +Q + GAA + + Sbjct: 347 RTLPYHRERLRILFAELQDQSAVRGAAYYAISKF 380 >UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP1_ALIAD Length = 409 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 167/396 (42%), Gaps = 13/396 (3%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + +K+ N V I P+SR +S L A+++ + E++ LV E+ Sbjct: 13 EKTADQALMKEINKSIVLNRIRFHSPISRSQISSETGLNKATVSALTDELIRDGLVLEVG 72 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLP 123 + GR + L+ A + + + + +A+ D +++ + + L Sbjct: 73 QGRS-RVGRRPIMLLFNASAGSVIGVELGVEYVRVAITDFAARALSVREEPLPRNLGAEE 131 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +L+R+ + I Q + + I + +PG++D G+V R P + + +PL +E Sbjct: 132 VLERLRASIAQALAEAPESRYGVIGIGVGVPGLVDFARGVVLRAPHIK-WENIPLKAMME 190 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G PV + ++ +A + E L+GA+ ++ + +G G++ L+ Sbjct: 191 SWFGKPVLVDNEANAGALGEKLYGAATHVSSLVYISAGTGIGTGIVIGDELIRGADGVAG 250 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E GH +D +G+ C CGN GC E AS +++ L G+ L D + Sbjct: 251 EFGHMSIDLHGETCPCGNVGCWELYASERALVAAYAK---------LTGEELDFDGVLAR 301 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 D A VG ++G +VN NP +++G+ L++ ++ + +I + Sbjct: 302 FRASDPAALQAFQTVGRYLGAGAVNLVNGLNPAMMILGNRLAEGGRMVTDAMQQAILSRC 361 Query: 364 LPAYSQHISVESTQFSNQGTMAG-AALVKDAMYNGS 398 L + + V+ + G AALV + G Sbjct: 362 LVSSYAKVVVQVSALGRDACAIGSAALVLHDFFAGP 397 >UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLD7_MOOTA Length = 410 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 96/400 (24%), Positives = 203/400 (50%), Gaps = 9/400 (2%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G++ +K+ N ++ +I + +SR L++L L PA+IT IVR+++ + V E + + Sbjct: 6 GNLQLVKKLNRISILNIIRKHNTISRQQLAKLTGLTPAAITGIVRDLVASGYVIEKGLGK 65 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 + GR V L ++ + L I+R L + +L +K ++ + + + D L R Sbjct: 66 SNG-GRRPVKLQFNPDSGYVLGAEITRNSTTLGMVNLDAKPLILKQYNIDMTDPQQGLSR 124 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY-EDVKEMPLGEALEQHT 186 + + + I + + + + + PG++D +V R P + +++P+ L++ T Sbjct: 125 LADEVTKMIIESGIESKNILGMGVAYPGLVDISTRVVKRSPNLGKKWRDIPIENWLQEMT 184 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 G+ ++++++ +A MAE FG + +++ + + + AG+I +G L + EIG Sbjct: 185 GIKIFVENNSNAAAMAEYCFGRGKETKNMAYINLGEGISAGIILNGMLAYGFRGYTGEIG 244 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQS------MSSMLHGQPLTVDSL 300 H +D G C CGN+GCLE++ +V +++ A L+ + L + ++ + Sbjct: 245 HLVIDEDGPLCNCGNNGCLESLCAVPALVRKANNELSLYNQKDPLKAIWLEKGEVKIEDI 304 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 A A+ +I G ++G+ +A ++N+FNP+ I IG L++A + L + +S++ Sbjct: 305 MANANNVGSYAQKLIRQAGWYIGKAIAAIINVFNPEAIFIGGILAEAGNSLLDPLIESVQ 364 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSL 399 + A P + + +E + GA A+ A++ G + Sbjct: 365 KHAFPELVREVRIELSSMRKDTGFYGACAIAIRALFEGGV 404 >UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZI2_HALOH Length = 391 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 89/395 (22%), Positives = 189/395 (47%), Gaps = 15/395 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G+ IK N +++LI + GP++R +L+ + +I+ V+ +++ V E E Sbjct: 4 KVGNSTFIKNLNQKRIFKLIHKEGPITRKELADNTDYSAGTISNHVKALIDQGFVIETEK 63 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPL 124 + GR V L V + + +S+ + + + L +L K+V + + Sbjct: 64 GYSSG-GRKPVYLTVNPDKGYIISVEVEVTRVKIVLFNLKIKVVAKTVFPINGPAQAKET 122 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + +I S I++ + K +++ I + +PG+ID E G++ P ++P+ + E Sbjct: 123 ISQIFSEIEKILSEREIKPDKILGIGVAVPGLIDKEEGLLEFAPNL-GWSKVPIVKYFED 181 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 GVPV ++++ +A + E F +D++ V I+ +G G+I +G L + E Sbjct: 182 KYGVPVVLENEANAAAVGEKEF-VYPDIKDMVYVSINEGIGCGLIFNGRLYRGAGGNAGE 240 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 GH +D G C+CGN GC ET+AS + I + Q + + + + + + A Sbjct: 241 FGHIIIDSDGPLCHCGNSGCWETLASENHIQKEYQELTGE--------ENVEKNEIYRKA 292 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 + G+ A ++ ++G LA +VN +P+ I++G + +A ++ + ++++ L Sbjct: 293 IEGEDRALSVVKQAAHNIGLGLANIVNSLSPRLIVLGGGIIEADTLIIDTVQSILKEKCL 352 Query: 365 PAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSL 399 + +E T+ + + G + ++N S+ Sbjct: 353 LLSYDKVDIEFTRLKDLACLYG---LASYVFNKSI 384 >UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKJ0_BACSK Length = 391 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 184/395 (46%), Gaps = 11/395 (2%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + +K N V+RLI + P+SR D+++ + L A+++ +V +++E V E+ ++ Sbjct: 5 DHETMKDMNKSTVFRLIQRHAPISRADIAKRSGLNKATVSALVAQLIENQFVYEIGTGDS 64 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 GR V L A H +S+ I + + DLS K + + L K+ +L Sbjct: 65 SG-GRKPVLLYCNDRASHAISVDIGVNGLLGIITDLSGKTIAKREMALTSKEFNIVLANT 123 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 + I+Q + I ++PGI+D++ G + P + + + ALE + Sbjct: 124 EAIIEQLIHEAPPSPYGICGITASVPGIVDSK-GNILLAPNL-GWENVDIKTALEHTFKL 181 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PV + ++ +A + E +G + + + + +G G I DG L + E GH Sbjct: 182 PVVVINEANAGALGEKQYGVGKPYSAISYISVSIGIGTGQIIDGKLFTGANGFAGEFGHM 241 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 +D +GK+C CGN GC E +S ++LE+A + + + + ++ + + AA G+ Sbjct: 242 SIDRHGKQCRCGNQGCWELYSSEKALLEIAAINM--------NRRSISFEEVLAAAETGN 293 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 A D VG +G L M++ NP+ I+IG+ +K + I +++ + Y Sbjct: 294 QAALDAFATVGHSLGIGLVSMIHSMNPEAIIIGNRFAKLKPYIQIPIEETLAKHLPSYYQ 353 Query: 369 QHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRL 403 + + + ++ + + G +L+ + + I L Sbjct: 354 KAVKLLFSELGQEAPLLGGSLLATSQFFNRHRIHL 388 >UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D168_HALOH Length = 396 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 98/401 (24%), Positives = 201/401 (50%), Gaps = 12/401 (2%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + P K N + +I + GP+SR D+S+ L P ++T ++ +++E +LV Sbjct: 1 MKKVYPVSYKLQKGMNEKLILNIIRRDGPISRADISKKTNLTPPTVTNVINKLVEENLVL 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E + E+ GRP + + EA++ + +S ++ L D K+ + ++ + Sbjct: 61 EDIMGESSG-GRPPQLVRLNPEAFNIVVTHVSSNKLTGYLTDAYLKVSKKVVYDIERLEK 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +LD + ID+ + + ++ + + G + G+ P + +P+ + Sbjct: 120 QKILDLMFEVIDELIKSA---SQEVPALGVVVHGPVKAREGVSVFAPNI-GWRNVPIKKL 175 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 +++ PV +++D+ A + E +G+ +G +++ + I + +G+ +I DG + S S Sbjct: 176 VQERFKKPVCVENDVRAMGLGEFYYGSGKGVDNLVFLKIGYGIGSAIIFDGKIFRGISDS 235 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPL 295 E GHT VD G RC CGN+GCLE ++S ++I++ L S++ + + Sbjct: 236 AGEFGHTTVDIGGPRCNCGNYGCLEALSSENAIVKAVVKDLKAGRMSLVRELCDGNLEKV 295 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 T D + +AA RGD L+ ++ ++G +A ++N NP+ I+IG + KA + +I Sbjct: 296 TPDHVYRAADRGDELSLSVLQEAARYLGIGIANIINSINPKVIVIGGGIIKARLHIEEII 355 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMY 395 + S+ ++AL Q + ++ + GT+ GA +V D + Sbjct: 356 NKSVEERALTNAYQSCDIVFSELGDIGTLKGAGNIVMDEIL 396 >UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=MLC_ECOLI Length = 406 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 406/406 (100%), Positives = 406/406 (100%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV Sbjct: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD Sbjct: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE Sbjct: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS Sbjct: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL Sbjct: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR Sbjct: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG Sbjct: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 >UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM15_9FIRM Length = 412 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 106/408 (25%), Positives = 184/408 (45%), Gaps = 9/408 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 N + +K+ N V LI + GP+ R +L+++ L P +IT I+RE+LE LV E Sbjct: 2 TNNGANSKYVKKRNRITVLNLIKEHGPIGRQELAQITGLTPPAITGIIRELLELGLVHED 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GR V L ++A + + + ++RGE + + DL + L + + Sbjct: 62 GYGES-RGGRRPVKLTFNSKAGYVIGVEVTRGETTVGVADLMNDPTDIARYPLDMSEPAA 120 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY-EDVKEMPLGEAL 182 L + + + K+ + I PG++ + G V R + PL E L Sbjct: 121 GLASLAELLRRIMNDEGKQGRSFVGVGIAFPGLVQAKTGTVQRSVNLGPAWRSYPLQEKL 180 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E G+PV+I+++ +A +AE FG RD++ V + + AGVI D ++ Sbjct: 181 EDVLGLPVFIENNSNACVLAERWFGGGVCCRDLVYVNLGEGISAGVILDDRIVQGFQGYA 240 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLT 296 EIGH +D G +C CGNHGCLE + SV ++++ A+ L + Sbjct: 241 GEIGHIVIDESGPQCNCGNHGCLEALCSVPALIKQARRDLPGLADGDPLKARWQSSGDIE 300 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + L A G A +++ +GR +A ++NL+NP+ + +G L+ A P++ Sbjct: 301 LADLLAVAQPG-TYANALLSRAVHWIGRAVAAVINLYNPEAVFLGGQLAGAMARFEPILR 359 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLL 404 D++ A P + + + + GA + RLL Sbjct: 360 DAVAAHAFPEIASATRIAFSALGEYPGVIGACALALKGLLHLPEARLL 407 >UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E382_DICTD Length = 400 Score = 402 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 100/402 (24%), Positives = 190/402 (47%), Gaps = 18/402 (4%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 +P +I ++ TN V I ++GP+SR D+S++ +L+P++++ IV ++ +V+E Sbjct: 2 KPVNIKSMRMTNVSLVLDTIRRMGPISRYDISKITKLSPSAVSSIVENLINVGIVKET-P 60 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 + GR + L + ++ + + I + +I L LS K++ + L D +L Sbjct: 61 AKVTKVGRRPIELTLNETGYYPIGIEIEKDKITGILMALSGKILKSKVINLNTTDVNEVL 120 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 +++ E + + + +PG I+ + G+ P + + + E L Q+ Sbjct: 121 GSVVNVYRSLIED--VNKEEIIGVGVAVPGTINRKEGVCIFSPNL-GWRNINIKEYLGQY 177 Query: 186 T-GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 P++I+H I A T E +GA G ++I V + V AG + DG L + E Sbjct: 178 IKDYPLFIEHIIKAVTYGEMWYGAGIGKDNIICVRVGSGVSAGFVLDGKLYRGPNDRAGE 237 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT----VDSL 300 GHT ++ GK+C CG++GCLET S + E + ++ + ++ + T +D + Sbjct: 238 FGHTVIERNGKKCKCGSYGCLETYVSTQVLYEKVFEGIQKNAYTKVNIENKTKDEILDEI 297 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 +A GD +I +G ++G +A ++NLFNP+ I+I LSKA ++L + + Sbjct: 298 IEAGKSGDRFILNIFEEMGTYLGIGIANLINLFNPEIIIIAGGLSKAGELLLEPVRRIVN 357 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAA------LVKDAMYN 396 A P + T+ GAA + ++ Sbjct: 358 LHAFPPI---PEIMVTKLGALTGPIGAASEVIEETLLKKIFE 396 >UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY97_9BACL Length = 399 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 109/385 (28%), Positives = 186/385 (48%), Gaps = 11/385 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 G IK+ N V I Q P+SR D+S L A+++ +V E++++HLV E+ Sbjct: 1 MKITGDQQLIKKMNKTIVLDTIRQRQPLSRADISAAIGLNKATVSSLVSELIDSHLVTEI 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GR L+ A + + + I ++ L DL ++ E+ L+ Sbjct: 61 GPGESSG-GRKPTLLLFNRSAGYAIGIDIRVNDLLAVLVDLEGHVLQEKLVPLSDFSPEH 119 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +L++I I QF + + + I I +PG++D + V P D ++ L E L Sbjct: 120 VLEQIRQTIRQFKEQLPESPYGIVGIGIGVPGLVD-DKSRVISAPNL-DWNKVELYEPLA 177 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G ++I ++ +A + E LFGA R A+++I + I +G+G+I G L S+ Sbjct: 178 SEFGANLHIDNEANAGAIGEKLFGAGREAQNLIYLSIGIGIGSGIIVGGELYRGTSNFSG 237 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E+GH + G C CGN GC ET+AS ++L+ A ++ + Q Sbjct: 238 EVGHMTIAENGPLCRCGNRGCWETLASEKALLDRAAKLWGDKHP--------DLEEMIQL 289 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD A +++ +GA +G LA +VN+ NP+ I+IG+ LS A D++ + +I ++ Sbjct: 290 AHSGDSRAIELLNEIGAQLGVGLANLVNILNPELIVIGNRLSLAGDLIQDAMLRTIENRS 349 Query: 364 LPAYSQHISVESTQFSNQGTMAGAA 388 L + + V + T GAA Sbjct: 350 LSYHRKKSGVAFANLGIRSTALGAA 374 >UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZW2_HALOH Length = 383 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 92/384 (23%), Positives = 184/384 (47%), Gaps = 10/384 (2%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +K+ N + LI+ GP+SR +++ + L PA+++ IV+++L+ LV+E E+ G Sbjct: 1 MKKINQQTILELINNKGPISRAEIAEITGLTPATVSNIVKDLLKMDLVRETRQGES-RGG 59 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R + L V E + + L GEI L +L+ K++ +++ L ++ Sbjct: 60 RKPILLEVNPEGAYVIGLEWGIGEIKAVLLNLNKKVIKTIKKQVDSFKPEWFLKTTVTIF 119 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 ++ + + +++ + I + G++D + G+ P + + + +G+ L+Q +P+ + Sbjct: 120 EE-VTGYVENPDKVFGLGIGIHGLVDPDEGVSLYAPHF-GWENIKIGKLLKQELQIPIML 177 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +D+ +AE G + I + +G+ ++ G LL+ E GH + Sbjct: 178 DNDVRMMALAEKW----EGRDNFIFINTGPGIGSAIVIKGELLYGRDFGAGEFGHMTIVE 233 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CGN GC+E + SV++++ L + +S + + L A A Sbjct: 234 DGALCSCGNRGCIEALVSVNNLVREYNDSLPEHISFHDIKREWNL--LIDLAREEKSRAY 291 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 II G ++G+ + +VNL NP+ ++IG A D++FPVI + + + AL S+ + Sbjct: 292 SIIEKAGVYLGKGIGNVVNLLNPEAVVIGGDFLLARDLIFPVIKEQVLETALKVPSRDLE 351 Query: 373 VESTQFSNQGTMAGAAL-VKDAMY 395 + T F + GA V ++ Sbjct: 352 ITGTAFGEKVGAIGAGTRVLQEIF 375 >UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammaproteobacteria RepID=A0KIG1_AERHH Length = 425 Score = 398 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 155/404 (38%), Positives = 250/404 (61%), Gaps = 2/404 (0%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + Q ++D IKQ N+ AVYRLID GP+SR+ ++ L+QLAPAS+TKI R+++E L++ Sbjct: 22 MTGGQIANVDLIKQVNSAAVYRLIDLQGPISRVKIAELSQLAPASVTKITRQLIEHGLIK 81 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E + + GR A+ L + ++S ++ RG + LAL DL K + + ++ + Sbjct: 82 ETSPQASTG-GRRAISLTTIKHRFQFVSAKLGRGYLQLALYDLDGKELDQHITQVTEIEQ 140 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 P++D ++ I F Q + L SIA+T+PG+++ E+G+V P Y+ ++ + L + Sbjct: 141 QPVVDMLLREIGAFIDSQQDRSRNLISIALTMPGLVNPESGMVIYTPKYQ-IRNLALAKL 199 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE H +P Y+ +D + +AE FG SR D I V + G+G+IT G + + + Sbjct: 200 LENHFNLPCYVGNDTRSLALAEHFFGESRDCMDSILVSVHQGAGSGIITKGKVFLGQNRN 259 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 + EIGH QV+P GKRC+CGN GCLETIAS ++I++ + +++ S L + +T+ +C Sbjct: 260 VGEIGHIQVEPLGKRCHCGNFGCLETIASNEAIVDKVKELISRGHLSSLQEKHITIQEVC 319 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 +AA+ GD LA+ +I VG H+GR +AI VNLFNPQK+LI ++ A +ILFP I + Sbjct: 320 KAAMAGDELARSVIENVGEHLGRAVAITVNLFNPQKVLIAGEITAAEEILFPAIRRCVEH 379 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQ 405 Q+LP++ + + + +F NQ T+ G ALVK A+ G LL +++ Sbjct: 380 QSLPSFHRGLPIVKARFQNQPTVGGFALVKRALLEGDLLQIIME 423 >UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIH3_THET1 Length = 418 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 97/403 (24%), Positives = 189/403 (46%), Gaps = 5/403 (1%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M G +++ N V ++ + P+SR L+ + L A+++ ++ E+ A LV Sbjct: 1 MPTGKHTGDQALVRELNLSIVLNVLREHSPLSRASLAAITGLNRATVSSLINELTRAGLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQE-LALK 119 E+ I+ + GRP L ++ A + + + I LA+ D SS+++ + E K Sbjct: 61 WEVGIEATDDVGRPGRLLELDPHAGRIIGMEVGVDFIALAIADFSSQIIWKRWVELTDGK 120 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +L I + K+ ++ + + +PG++D G + P +++P+ Sbjct: 121 SPEEVLGLAADLIQEGVELTDKEYGQVLGLGVGVPGLVDVPRGHLLFAPNL-GWRDVPVR 179 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 E+ VY++++ + + E+ FG +RG V+ + VG G++ G ++ Sbjct: 180 SMFEERFPFTVYVENEANMAALGESYFGVARGYNCVLYISAGVGVGGGIVLGGQIMRGAM 239 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQS--MSSMLHGQPLTV 297 E+GH + G C CGN GC ET+AS +++ L ++ S LTV Sbjct: 240 GFSGEVGHMTMVEDGPICGCGNRGCWETLASESALVRRMLEALRRAGETPSWARDDHLTV 299 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 ++ +AA GD LA+ ++ V VG +A +VN+ NP+ +++G LS D++ P I + Sbjct: 300 PTVLEAARAGDRLARGVLNEVARDVGLGIANLVNVLNPEIVVLGGMLSMGGDLMLPTIRE 359 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSL 399 ++ + L Q + +E + + G A V D + + + Sbjct: 360 TLEHRGLRWLVQPLRLELAALGRESCVLGGIATVYDRVLSQPV 402 >UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D498_GEOSW Length = 397 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 96/400 (24%), Positives = 181/400 (45%), Gaps = 10/400 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + G+I +K+ N V +LI + +SR +++++ L A+++ +V E++ H V E Sbjct: 1 MVRTGNIGLVKKINKQIVLKLIREKNNISRAEIAKITGLNKATVSALVDELISEHFVSES 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 I + GR + L A + + + I+ L DL+++++ E+ + Sbjct: 61 GIGVSTG-GRRPLMLRFNEAAGSLIGIELGVNYIYAVLTDLNAEIIWEKMCPFRANEKQE 119 Query: 124 -LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 +++++I+ I + + + I I +PGI+D E G+V P + L L Sbjct: 120 TIIEKMIAMIHEAIRQAPTTPYGIMGIGIGVPGIVDAEEGLVVFAPNLH-WDHVSLSSIL 178 Query: 183 EQHT-GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 ++ P+ I+++ + E FGA + + + V +GAGVI L Sbjct: 179 QKQWPNYPIIIENEAKLAALGEKWFGAGKEFANFVYVSAGIGIGAGVIIHNQLYRGIDGI 238 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH +D +G RC CGN+GC E AS I + + SML G +V+ + Sbjct: 239 AGEIGHHVIDVHGFRCSCGNNGCWEMYASEKYIQRRLE---QEHYHSMLEG--FSVEKVR 293 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A GD I+ VG ++G + ++ +NP+ +++GS + KA + + + + Sbjct: 294 ALAESGDKQMAQILAEVGHYLGIGILHIIYAYNPEAVIVGSTIGKAGKWVLEPAREEVEK 353 Query: 362 QALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLL 400 + L + +Q + GA A V + + S L Sbjct: 354 RILVKNGNGPFIIPSQLLEKSCAIGAVASVLEKVVMPSEL 393 >UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n=3 Tax=Bacillaceae RepID=Q8ELU2_OCEIH Length = 400 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 85/408 (20%), Positives = 169/408 (41%), Gaps = 36/408 (8%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + N+ + +KQ N V+ I Q P+SR D+++ L ++++ +V E++ L+ Sbjct: 1 MKINRTWNQYVVKQENKSLVFNTIRQNSPISRADIAQQLGLNKSTVSSLVSELINEELIG 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E+ E+ GR V L A + + + + I L DL ++ +E Sbjct: 61 EVGPGESSG-GRRPVMLFFNNTAGYSIGIDLGVNYILGVLTDLQGNILEQEQVTFDNLTY 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +L + I + K + I + +PGI++ E + P + + + L E Sbjct: 120 EEILVHLNEVIQKLITMTSKSPYGVIGIGVAVPGIVNKEE-KILLAPNL-NWRNISLKEE 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVI------------ 229 LE +PV I+++ +A E FG + ++ I Sbjct: 178 LENQFNIPVIIENEANAGAYGEVQFGIGKENKE--------------IVYVSVGVGIGVG 223 Query: 230 --TDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMS 287 + L + E+GH +D +G +C CG+ GC E AS ++L+LA+ + Sbjct: 224 LVLNNQLYKGNNGFSGEMGHMTIDAHGAKCSCGSEGCWELYASEKALLQLAKRNKIYTTD 283 Query: 288 SMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA 347 +D + Q A D +A + + ++ + ++N FNP++++IG+ +S A Sbjct: 284 PYDL-----LDHMIQLAKNNDSVALEAFNEISKYLAIGINNIINSFNPEQVIIGNRMSAA 338 Query: 348 ADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 + + DSI Q+L + + ++ + + G A + Sbjct: 339 KKWIEKPLLDSINNQSLWFSQKDLKIDFSSLNTHSNALGMAAFSSERF 386 >UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788127 Length = 390 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 103/400 (25%), Positives = 179/400 (44%), Gaps = 14/400 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 N G +K+ N + I Q PVSR +S+L L A+++ +V+E+ HLVQE+ Sbjct: 2 TNITGDQALVKKINTSIILDTIRQHAPVSRAKVSKLTGLNKATVSNLVQELCSNHLVQEI 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GR L+ +A + + + + +I L DL +++ EE L Sbjct: 62 GPGESSG-GRKPQLLLFNGQAGYAIGVELRVKQITAVLTDLEGRILAEEDTALEAHGVES 120 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + ++ I + + I + +PG++D + G V P +PL E LE Sbjct: 121 VTRLMVGMIHGLMRQAPPSPYGIIGIGVGVPGMVDGD-GTVLFAPNL-GWDMVPLQEQLE 178 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G+PV I ++ +A E FGA R AR ++ + +G+G+I +G L Sbjct: 179 LELGLPVTIDNEANAGAQGELRFGAGRDARHLLYISAGSGIGSGIIINGELYKGARGYAG 238 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E GH ++ G+ C CGN GC E AS + ++L + + L Sbjct: 239 ESGHMSIEAEGRECSCGNRGCWELYAS---------EKSYDGKDAVLPSRRTS--ELVHH 287 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A G +G ++G + +VN FNPQ ++IG PLS A + + + Q+ Sbjct: 288 AELGHKDTIRHFEELGRYLGIGITNLVNGFNPQSVIIGGPLSDARAWIEETLQQVVAQRT 347 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRL 403 LP + + + + + ++ TM GAA + + G + + + Sbjct: 348 LPYHRERMEIRFAELGSRSTMIGAAYSAISQFLGPVRVSM 387 >UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178870E Length = 413 Score = 395 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 177/401 (44%), Gaps = 8/401 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + + +K N + L+ G +++ +++ L ++ + E+++ L+ Sbjct: 1 MNSSVGKNNRHVKNLNRIGIIALLRDYGSLTKAEIAAKMNLTFTAVNNLTDELMKDRLIA 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKD 120 E + +RGR L + + + + + IS + A+ +L K ++++ + Sbjct: 61 EAGFYDESSRGRKPKLLSLNSGDIYTVGVHISASSVRAAVINLQGKAMMDKYSPFEDNAN 120 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 +++ IIS I K R+ I + PG +D G + P + ++ L Sbjct: 121 RGSVVNVIISTIQAVLDESGLK-SRIIGIGVGAPGPLDPVQGKILSPPNLPGLHQVRLKG 179 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 +E++T +P I+ D + + E +G R ++ V D +G+G+I + + Sbjct: 180 LIEENTELPTQIEKDANVMALGELWYGNGRHFNHLVYVDADIGIGSGLIFNQKIYQGCPF 239 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQP 294 EIGH +D G RC CGN GCLE IAS +I+ L + S L + Sbjct: 240 GAGEIGHCTIDIDGPRCNCGNTGCLEAIASGMAIVRRVGEELRRGAGSSLQSSFDGNDHG 299 Query: 295 LTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPV 354 L + + A + GD LA +++ +VG LA ++NL P+ I+IG L+ F Sbjct: 300 LDITDVITAGVDGDPLAANMLNESARYVGISLANVINLLTPETIIIGGVLANRYPDYFTY 359 Query: 355 ISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 + ++ ++L ++ I ++ ++ + GA + Y Sbjct: 360 VRETSYNRSLSSFHDKIMLQPSELGEYAGVIGAGTIVFEKY 400 >UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus licheniformis RepID=Q65DK2_BACLD Length = 387 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 83/390 (21%), Positives = 161/390 (41%), Gaps = 13/390 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 +K+ N ++ I + GPVSR LS + L A+++ V +L+ ++ E Sbjct: 2 NTADQALVKKMNKALIFEQIIENGPVSRAKLSEITGLNKATVSSQVSSLLQKDIIYETGP 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 E+ GR V L +A + + + + I +AL DL L+ + + L +D Sbjct: 62 GESSG-GRRPVMLKFNRKAGYAVGVDVGTNYIIVALTDLEGHLIEQFERTLDEEDIQATE 120 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 + +I + LT I + +PG++D E V P + +P+ E LE+ Sbjct: 121 EALIELTGLAVDKIPPSPFGLTGIGVCVPGLVDNER-HVVFTPNKP-IHLIPIKEKLEER 178 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 GVP+ I+++ +A + E +G + V I+ +G G++ +G L E Sbjct: 179 FGVPILIENEANAGAVGEKEYGEGGQLEHAVFVSINTGIGLGILMNGKLFRGVQGFSGEA 238 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH + G C CGN GC E AS ++ + +++ + A Sbjct: 239 GHMSIHFDGPLCRCGNRGCWELYASEKAVFSHYAANSGAQL----------YETVKELAD 288 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 RGD + G H+G L ++ NP I++ + + ++ + I +I ++ Sbjct: 289 RGDPGMMETFERFGFHIGIGLLNILKTLNPDTIILRNTIVESYPSIVDAIKKTIASRSAA 348 Query: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMY 395 + ++ + + G + + + Sbjct: 349 EALSNYHLKISTLGRTASALGMSSLVTERF 378 >UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID=A8FE34_BACP2 Length = 386 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 174/394 (44%), Gaps = 14/394 (3%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 + +K+ N + + I Q P+SR LS L ++++ V +++ LV E+ E Sbjct: 4 ADQNFVKKINQKLLLKEILQHAPISRAKLSERTGLNKSTVSSQVSTLMKEQLVYEIGQGE 63 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 + GR V L+ A + + + + L DL ++ EE L + Sbjct: 64 SSG-GRRPVLLMFNKRAGCSIGIDVGVDYVNGILTDLEGSILHEEQINLPSSAPDVTIRI 122 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 + I Q + L I + +PG++D + IV P K + L +AL+ Sbjct: 123 LTELIQQLMSQIPSSPYGLIGIGLCIPGLVDADQQIV-FTPH-SKWKNVDLKKALQDAFQ 180 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 VPV+I+++ +A E +FGA++ +I I +G G+I + HL E+GH Sbjct: 181 VPVFIENEANAGAYGEKIFGAAKHYDHLIYASIGTGIGIGIIINHHLYRGAYGFSGEMGH 240 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 +D G C CGN GC E AS ++ + Q + +P++ + Q A Sbjct: 241 MTIDFNGPTCSCGNRGCWELYASEKALFQSLQ----------TNEKPISHQDVEQLATLN 290 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D+ + + G ++G L +++ FNPQ I++ + + ++ + VI + + + + Sbjct: 291 DMKTLNALRNFGFYLGVGLTNVLHTFNPQAIILRNKVIESQPTVLRVIQEEVSSRIDTQF 350 Query: 368 SQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLL 400 S H+ + + + + G +LV +A + L Sbjct: 351 SSHVELLPSSLGHNAPVLGMTSLVIEAFLQDATL 384 >UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaproteobacteria RepID=NAGC_ECO57 Length = 406 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 161/403 (39%), Positives = 252/403 (62%), Gaps = 2/403 (0%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 + Q G++D +KQ N+ AVYRLIDQ GP+SRI ++ +QLAPAS+TKI R+++E L++E Sbjct: 5 GQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKE 64 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 ++ + + GR A+ +V ET +H + +R+ R + + L DLSSK++ EE L + Sbjct: 65 VDQQASTG-GRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQ 123 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 L +++ I QF +Q+KL L +I++ LPG++D ++G +H MP + V+ L EAL Sbjct: 124 TLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDPDSGKIHYMPHIQ-VENWGLVEAL 182 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E+ V ++ HDI + +AE FGAS+ D I V + GAG+I++G + + ++ Sbjct: 183 EERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNV 242 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 EIGH QV+P G+RC+CGN GCLETIA+ +I + L Q S + T+ ++C+ Sbjct: 243 GEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTICK 302 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 AA +GD LA ++I VG H+G+ +AI +NLFNPQKI+I +++A +L P I I Q Sbjct: 303 AANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCINTQ 362 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQ 405 AL A+ ++ V ++ ++ + ALVK AM NG LL LL+ Sbjct: 363 ALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILLQHLLE 405 >UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I1T3_CLOCE Length = 399 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 178/391 (45%), Gaps = 4/391 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G+ +K+ N ++ LI VS+ L+++ L+P + IV +L+ ++ Sbjct: 1 MRMGKAGNNKLLKEINETSLLELIRINKQVSKAGLAQITGLSPTACGTIVTNLLDKGYIR 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E I + GR + + ++ + + I I L D++ ++ ++ Sbjct: 61 EAGIGTSKG-GRRPILYELTPGSYFSIGVDIDIDYIRFILMDITGQVEFKDRISCDFARA 119 Query: 122 L-PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + + I + H + +RL + +++PG+ID + P + + L Sbjct: 120 ASESIRLMEEKISEIIKIHNIEHDRLLGVGVSVPGMIDNLTHEIIFAPNL-GWERVNLEH 178 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 +++ P+Y+ ++ + E G RD + + + +G+ + G+L Sbjct: 179 MMDRIGDFPIYVDNEAMCSALCENWIGCCMDERDFVCINMKSGIGSSIFAAGNLYRGCCG 238 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-QPLTVDS 299 S EIGH VD G RC CGN+GCLE + S S++E AQ + Q + + + +TVD Sbjct: 239 SAGEIGHITVDQNGPRCACGNYGCLEALVSARSMVEKAQKLVRQGLITDFEDIEAITVDE 298 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + + A G+ A+ I+ ++G +A ++N NP KI++G L+K ++ + + Sbjct: 299 IFRLAREGNESARVILVEAAGYLGLAIANLINTVNPSKIVLGKELAKFSEDIVDHLKSIA 358 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALV 390 +AL + + V ++ + GAA++ Sbjct: 359 SAKALKYPASRVQVVVSKIGEDTSALGAAII 389 >UniRef50_Q9K992 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9K992_BACHD Length = 386 Score = 390 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 190/392 (48%), Gaps = 12/392 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + G IKQ N V + I + P+SR +S L +++ +V E++ +LV E+ Sbjct: 1 MSVTGDQRFIKQMNKQIVLQTIRKEAPLSRAQVSLTTGLNKGTVSSLVAELIADNLVYEV 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GR V L+ + +A + + + I+ + L DL ++ + L +K+ Sbjct: 61 GPGESSG-GRRPVMLMFQNKAAYAIGINIAVNYLSGVLTDLVGNVIEKVEWSLHVKEFDH 119 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + +++ I+Q + I + +PGI++ E G V P + +E+PL + LE Sbjct: 120 VNQQMVQLIEQLMKAAPPSTYGIIGIGVAVPGIVN-EEGDVLFAPNL-NWREIPLKKQLE 177 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 +H +P+ ++++ +A + E +FG + + ++I I +G+G+I L Sbjct: 178 EHFQLPIAVENEANAGALGEKVFGKGKESENMIFFSIGIGIGSGIIFGNSLYRGKGGYSG 237 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E+GH ++ G C CGN GC E AS ++L+ L+ + LT+D L + Sbjct: 238 EVGHMSIETNGPLCTCGNKGCWELFASEKAVLQQ---------GEALYEEVLTLDDLFEK 288 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A +G+ A D+ +G ++G +A M+N NP+ +++G+ + K L + ++ +A Sbjct: 289 ARKGEQTAIDLFQKIGVYLGTGIANMINALNPELVVVGNRMVKGRPWLEHSLKQTVADRA 348 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 L +++ + VE + + G G + + + Sbjct: 349 LSFHAEQVLVEFSDLNENGISLGVSYLLIDSF 380 >UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n=1 Tax=Oceanobacillus iheyensis RepID=Q8EL07_OCEIH Length = 402 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 185/395 (46%), Gaps = 9/395 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 ++ G++ I++ N + I + GP+SR D+++ ++P ++T V E++E +V E Sbjct: 1 MSRTGNLKLIQELNRSLILDTIRKKGPISRSDIAKKLTISPTTVTTAVSELIEGKIVYED 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 + + GR V L + + + I+ +I +A +L K+ + + + Sbjct: 61 GVGNSNG-GRKPVLLRFNPDTHSIIGVSITNSKIKIAEMNLEGKVKKKSVEITNNEQGED 119 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 ++ +I + F + L+ ++I PGI+++E G + + +PL + +E Sbjct: 120 IIKLVIETLKTFIKNEKVNLDYCEGVSIITPGIVNSEEGCISYNSHL-GLYNIPLKKMVE 178 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G+P ++++D++A+ AE+ FG+ ++ + I +G+G++ + + S Sbjct: 179 STIGLPTFLENDVNAFVSAESYFGSYNHYNSILFLTIGDGIGSGIMINDSIYKGYKGSAG 238 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSIL-ELAQLRLNQSMSSMLHG------QPLT 296 EIGHT V P G +C CGN GC+E + SI + + + +++ +T Sbjct: 239 EIGHTTVVPGGIKCKCGNSGCVENYVNWPSIHSRIVSAIITKGRDTLIKNYIGNDFTKIT 298 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 D A D L K+I+ + ++ + ++ +P+ I++ + + + Sbjct: 299 PDMFVLAIRENDELCKEIMDDMVNYLSITIVNAIHTLSPELIILSGAIIHGNQVFIDQLQ 358 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 + ++++ LP + ++ +ST + GAA V Sbjct: 359 EEVKKRLLPIIREDVNFQSTSLGPDFDLLGAASVI 393 >UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YIH1_EXIS2 Length = 386 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 90/390 (23%), Positives = 173/390 (44%), Gaps = 12/390 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + P + ++ N V RLI P+SR++L++ +L +++ IV E++ LV Sbjct: 1 MVKEMPRNSKWMRSYNRALVLRLIRMHQPISRVELAQQTKLTKPTVSNIVGELIADQLVM 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E E+ + GR + L + + + + + + + DLS + E + Sbjct: 61 ERELGVSNG-GRKPILLELVAKEQYVIGIDATSHRFIGVIADLSGNTIHEVETMGKFDTN 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L++ ++ Q ++ + I I++ G+++ E G++ P + + ++ L E Sbjct: 120 EELMEAVVQLCQQLIDATD-QVGTIHGIGISVHGMVNPETGVILFAPRFH-LHDVALKEH 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LEQ PV+I++D+ A E LFG G + +G + DG L+ + Sbjct: 178 LEQRFAYPVFIENDVRALASFELLFGEGVGVDQFFYLYAGEGIGGAYVLDGKLIDGENHI 237 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+GH ++D G C CGN GCLE +A ++L + + Q T+ L Sbjct: 238 TGEVGHMRLDLDGPICSCGNRGCLEALAGEKALLRDFEA---------VDPQVKTLTELR 288 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + D A G ++G + ++L NP++IL+G P+ + A + I + + Sbjct: 289 RRLTDQDPHATAAYHRAGEYIGIGVLNTIHLINPKRILLGGPMFELAPSIVDQIKERVEH 348 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVK 391 AL S+ V+ +S + AA + Sbjct: 349 TALTTASRETDVKMVPWSEKQGALSAAALA 378 >UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETA5_9FIRM Length = 406 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 172/376 (45%), Gaps = 9/376 (2%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 + Q N +V +I P+++ ++R L+ ++ KI E HL++ E+ G Sbjct: 1 MAQLNRKSVIDIIRTQSPINKAQIARQTGLSIPTVMKITDEFERNHLIRVNGKGESNG-G 59 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD-LPLLDRIISH 131 + L + +A++ + + + R I + DLS KL+V+ES + L++R+I Sbjct: 60 KRPELLEIIPDAYYIIGVDVGRSRIKAIIMDLSGKLIVKESIKTGRTVPSQQLIERLIYL 119 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 I Q + + + I +PG++DTENG V P + + + L + +E H Sbjct: 120 IHQVVQESNISVSQFLGLGIGMPGLLDTENGTVLFSPDFH-WENVELVKPIEDHFPFYTI 178 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 +++ A M E FGA + I + + H +G+ ++ +G S EIGH ++ Sbjct: 179 LENSNRAMAMGEHWFGAGVESSYFICLNLGHGIGSAIVQNGEFYRGSCGSSGEIGHITLE 238 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAAL 305 G C CGN GCLE +AS +++ A+ + Q + + + + + AA Sbjct: 239 KDGPLCSCGNRGCLEALASANAMAGQARELVRQGKGQRILELAQGNEENIDAKEIFDAAK 298 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 GD A I+ ++G LA +NL +P +++ ++ A D L + I+ + + Sbjct: 299 EGDAAAALIVDKAIEYIGIGLANYINLLDPDMLILAGGVTGAGDYLITRLKRVIKARQMK 358 Query: 366 AYSQHISVESTQFSNQ 381 + + + ++ N Sbjct: 359 FAGRKVKIRISKLGND 374 >UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3682C Length = 404 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 97/401 (24%), Positives = 188/401 (46%), Gaps = 10/401 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M +N + Q+K N V I + G ++ L+ + L +I KI+ E+ E +L+ Sbjct: 1 MADQN---NQVQLKNFNRRTVLGYIRRNGTATKAGLASVTGLTFMAIKKILAELQELNLI 57 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK- 119 ++ E+G GR AV V+ + + + I++ +AL +L +++ E + + Sbjct: 58 RD-GQMESGGMGRKAVSYVINENYRYTIGIHINKFITGIALLNLRGQILAIERYSMDKEF 116 Query: 120 -DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 + + + ++ + K E + I + PG +D E+G++ P + +PL Sbjct: 117 ENQNDFVTMLAEAVELVIEKSGVKREDILGIGVGAPGPLDCESGVILTPPNMPMLDYLPL 176 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 E LE TG PV++ D + AE + +R ++ V +D +G+G+I DG L Sbjct: 177 KETLEGRTGFPVFLNKDTNVIAFAEYWYRNNRDCSNLAYVEVDMGIGSGLIIDGKLNVGA 236 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH--GQPLT 296 + E GH +D G C CGN GCLE ++S ++L + +L L+ LT Sbjct: 237 NCIAGEFGHITIDINGPLCNCGNRGCLEAMSSGIAVLRMLGEQLENQKDHPLYHKRNALT 296 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 ++ + + + DLL I+ +VG ++ ++N F+P+ I++G L + + F ++ Sbjct: 297 IEDVFEMTDKKDLLTISILNRSAFYVGVAVSNLINTFDPEMIILGGILIQKYPMYFNIVQ 356 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYN 396 D Q+ + ++ + + + GA +V D +N Sbjct: 357 DVANQRKVKGAKENY-MAVSVLGENAGVIGAGEIVTDHFFN 396 >UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CY52_MYXXD Length = 408 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 178/400 (44%), Gaps = 8/400 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 ++ N+ + +I + +SR +++R +L+P++++ IV ++ + LV+ + Sbjct: 8 TTVDAAGMRAQNSSLLLNMIWRERQISRAEIARRTELSPSTVSAIVADLERSGLVRSIGA 67 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPL 124 + GR + +A+ + + + + AL DL ++ A++ D Sbjct: 68 GVS-RGGRRPTLIGFCDDAFSLIGVEMGATHVTAALTDLRGRVRAYRHASHAVREDPKGT 126 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L ++ + + + + + I +P + ++ + E+L Sbjct: 127 LQKVRELVQEVLDAERVPRRSVAGMGIAVPSPVHPSAPGKLSPLLVPAWRDYDVQESLRS 186 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 G+PV++ +D + ++E +GA D+ + + +G+G I G + + E Sbjct: 187 AFGLPVFVDNDANLGALSECYWGAGVNGEDLAYIKLATGIGSGHIIHGDVYRGAGGTAGE 246 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 I H VD G +C CG GCL T+ ++LE A+ + + + LTV L + A Sbjct: 247 ISHMAVDSSGPQCVCGLRGCLVTLIGSAALLERARELMGRK-----DKRALTVRELVEGA 301 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 G+ A+ +I G+G ++G +A ++NL NP +++G +S D+L + S+R++AL Sbjct: 302 RAGEPAARQVIDGLGHYLGIAVAGLLNLLNPAIVVLGGEISSVGDLLLDPLRASVRKRAL 361 Query: 365 PAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRL 403 + ++ ++ GAA LV A L L Sbjct: 362 STSMAETRIVTSALGDRAIAVGAATLVLQAALRDRTLFPL 401 >UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_9ACTN Length = 389 Score = 385 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 183/387 (47%), Gaps = 14/387 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 PG +++ N + + Q G +++++L+ + L+PA+++ IV+E+ A ++ Sbjct: 2 TPGSQTSLREANRARIVSAVQQRGSLTQVELAGVTGLSPATVSNIVKELTGAGVLH---T 58 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL- 124 GR A + + + + +A+ D++ ++V ++ L Sbjct: 59 SPTSRSGRRAQQVTLARNLGLVGGIHFGSRSLRVAVADVAHRIVADQRMPLPPDHRADAG 118 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L+R + + L+ + ++ + +P +D G + + + + E LE+ Sbjct: 119 LERAALLLTEMVESVDSSLQEVLAVGVGVPAPVDVRTGQISTIGVLRGWDGICVPEVLER 178 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 G+PVY+ ++ + +AE FGA+RG + V+ + I H VG G++ +G + H S + E Sbjct: 179 RLGLPVYVDNEANLGALAEVRFGAARGRQHVVYLRISHGVGGGIVLNGEVFHGRSGTAGE 238 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGH +D G C CGN GCLET +L + LT+ + A Sbjct: 239 IGHVTIDDNGPICRCGNRGCLETFVGAPVLLSMLTASHG----------HLTLPDVIARA 288 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 +GD + +I+ G ++G A + NLF+P+ +++G L++A IL + + Q+ + Sbjct: 289 QQGDPGCRRVISDAGRYLGVAAASVCNLFDPELVVVGGRLAEAGPILMDPLRTVLAQRTV 348 Query: 365 PAYSQHISVESTQFSNQGTMAGAALVK 391 P+ + + V +++ + + GA +V Sbjct: 349 PSTAGPVEVVASELGSAAEVRGALVVA 375 >UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1SS79_PSYIN Length = 408 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 135/405 (33%), Positives = 234/405 (57%), Gaps = 7/405 (1%) Query: 1 MVAENQPGH-----IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREML 55 MV NQ +D IKQ N+ +Y++I++ P+SR+ ++ +++LAPAS+TKI R++L Sbjct: 1 MVRNNQQADSVIASVDHIKQLNSATIYKVIEKYAPISRVKIANVSKLAPASVTKITRQLL 60 Query: 56 EAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQE 115 + ++ E ++A GR A+ L T+ H L+++I + + L+ +L+++ + + + Sbjct: 61 QQGIICET-ARQASTGGRCAISLAPNTDNIHVLAIKIGQKTLSLSCYNLAAEQLTTKKIK 119 Query: 116 LALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE 175 + +D+ LL +IS ID F + QK + ++++IAI+L G+I+ + G+V P++ + Sbjct: 120 IKSEDEQQLLAFLISEIDNFIKKQQKNMGKISAIAISLSGLINPKKGVVLYSPYHP-LVN 178 Query: 176 MPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLL 235 PL +EQH +P +I + + +AE FGAS+ D I + I H VG+G+I +G L Sbjct: 179 FPLANKIEQHFQLPTFIGNHTRSLALAEHYFGASKECLDSILISIHHGVGSGIIIEGKAL 238 Query: 236 HAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPL 295 + ++ EIGH Q +P G++C+CGN GCLET S I+E + + Q + L L Sbjct: 239 LGQNFNIGEIGHIQANPAGRQCHCGNFGCLETEVSDRVIVEKVAIAIKQGSFTRLSLDSL 298 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 ++ + QAA D L + I+ ++G+ +AI++NL NPQKI+I + +A L I Sbjct: 299 NIEKIYQAAEDNDPLCQKIVEDAATYLGKAIAILINLLNPQKIIIAGKIIRAKTSLLSTI 358 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL 400 I Q LP + + +E++ T+A AL+K A+Y G LL Sbjct: 359 EQCIAHQVLPNFQHKVQIETSLLEPDTTLAAFALIKQAIYEGDLL 403 >UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID=Q724N5_LISMF Length = 404 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 175/396 (44%), Gaps = 8/396 (2%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G+ D IK N V LI + G ++R ++++ +++T I+ ++ + ++ Sbjct: 1 MDILRKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGIIL 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KD 120 E + + GR A + + +S+++ ++ AL DL+++++ S + K Sbjct: 61 E-GAETSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDLNAEIMENTSIPFSSEKK 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 ++ I ++ + + + L + I + G+++ G V R + + L Sbjct: 120 PEEAIELIAKNVKKMCE--NRDMNHLLGVGIAISGLVNRRKGTVIRST-MLGWENVALEA 176 Query: 181 ALEQHT-GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L + +PVY+ +I+ +T+AE G + + + V + +G V+ + + + Sbjct: 177 MLHAYFPDIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVGAGLGLSVVINRQIYYGAQ 236 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 E GHT + P G +C+CG GCLE AS + +S L + D Sbjct: 237 GGAGEFGHTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGEELKEAYPTSEL--KDFHFDK 294 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + ++A GD +A +++ +G ++G + ++N FNP+K++I D+ I + Sbjct: 295 VAKSARAGDEMATELMGKMGEYLGYGIRNIINTFNPEKVIIVGEGLHHRDLFLTKIDEIA 354 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 Q + +T + + GAAL+ Sbjct: 355 SQNFFSGAGFETEITTTSLEDPAWLQGAALLVIHQL 390 >UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA78_BREBN Length = 401 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 178/395 (45%), Gaps = 10/395 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + G + I++ N + I Q GP+SR D+++ ++P ++T V E++ +V E Sbjct: 1 MRRTGDLKLIQELNRFIILDTIRQFGPISRSDIAKKQGISPTTVTSAVNELIRDGMVAED 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GR + + + + + I+ I +A +L + ++ + Sbjct: 61 GTGESKG-GRKPIMVRFCPDGKFLIGVSITNTAITIAEMNLEAATKQKKIYPVKAGLVSD 119 Query: 124 -LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 ++ ++ I F + R I+I PGI+D +G++ + ++PL + Sbjct: 120 LIIQYVLDSIGDFLQSVD-DVSRCLGISIIAPGIVDAASGVIRFNSKLR-LHDVPLKDMA 177 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E+ G+ ++ +D +A +AE FG A +++ V + VG+G++ +G + Sbjct: 178 EERFGLNTWLDNDANAIALAEKNFGGGLNADNLLFVTVGEGVGSGLVVNGSIFRGSRGGA 237 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLT 296 E GHT VD G RC CGN GCLE + +I + + +++ +T Sbjct: 238 GEFGHTTVDRSGMRCDCGNVGCLENYVAWPAIYSGILSAVTRGKETLVMDLADGDMTRIT 297 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 D QA +GD + +DI+ + +++ + +VNLFNP I++G + + +LF I Sbjct: 298 FDVFRQALHQGDQVCQDIVDEIASYMSIGIVNLVNLFNPSLIILGGEMIRDNQVLFERIQ 357 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 + QA+ + + T + AA V Sbjct: 358 KQVMAQAMGTMVEGLEFRPTVLGADFEVKAAAAVL 392 >UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepID=A8L0L3_FRASN Length = 401 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 99/394 (25%), Positives = 184/394 (46%), Gaps = 16/394 (4%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + PG ++ N V ++ + G +++ +++RL L+PA+++ IV E+ E+ Sbjct: 16 MPRTPPGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESG--- 72 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD- 120 +++++ A + GR AV + + + + L + +A+ DL+ +++ E+ ++ + Sbjct: 73 DVDVRPAVSGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQ 132 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + +D R + + + LPG ID G V +P Sbjct: 133 AQEGIATAGRLVDDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGSSAILPGWVGVPAAA 192 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 + + G+PV + +D + +AE +GA +G RD+ + VG+G++ DG + G+ Sbjct: 193 QMSERLGLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGLVIDGRVHRGGAG 252 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGHT +D G C CGN GCLETI +LE + HG LTV + Sbjct: 253 TAGEIGHTTLDENGSVCRCGNRGCLETIVGTSVLLESLRTS---------HGPDLTVRGM 303 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 A+ GD +++ G +G A + NL NPQ I++G L+ A + L + + Sbjct: 304 IDRAVAGDAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQVVH 363 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGA-ALVKDA 393 + A+PA ++ + + + GA ALV Sbjct: 364 RFAVPAAV--PTIVAGVLGERAEVLGALALVLRE 395 >UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0H5_HERA2 Length = 414 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 90/383 (23%), Positives = 177/383 (46%), Gaps = 20/383 (5%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 + +++ N V +LI + G +SR D+++ +L+ ++++ I+ ++++A LV E I Sbjct: 8 TADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIG 67 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-L 125 + GR + L +A + + L +SR + + DL++++ + D + + Sbjct: 68 TSKG-GRRPIILEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGM 126 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 I I R+++I + +PG +D NG P +P+ E L Q Sbjct: 127 PLIKQLISTMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIREELSQT 186 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDH-NVGAGVITDGHLLHAGSSSLVE 244 +PV I +D + MAE +GA +GA++++ + + +GAG+I D HL S E Sbjct: 187 FRLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGSIGSAGE 246 Query: 245 IGHTQVDPY-----GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 +GHT + G N G LE +AS ++L LA+ + L V + Sbjct: 247 VGHTTLSVENDESFGPI----NAGSLEALASQITVLRLAREQ-------KLISADDDVHT 295 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L + A + I+ ++G +A ++N+FNP +++IG + + + +L I ++ Sbjct: 296 LVRKAES-SPEIQAILRRTAHYLGVAIASIINIFNPDRVVIGGVIPETSPLLIETIRATV 354 Query: 360 RQQALPAYSQHISVESTQFSNQG 382 ++AL + S+ Sbjct: 355 ARRALSIAVNNTSIVPGALGRNV 377 >UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR-2 RepID=C6D7F4_PAESJ Length = 396 Score = 380 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 183/395 (46%), Gaps = 16/395 (4%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 + + +++ +++ N V RL+ + SR +L++ + L ++IT I+ E++ +V Sbjct: 3 VTKTKRGTNLEDVQEMNRSLVIRLMRRREVCSRAELTQDSGLNQSTITNIINELISWGIV 62 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E + E G +GR ++G+ + E + + +R++R I +AL DL + + + D Sbjct: 63 VETGVIE-GKKGRRSIGIKLNCEPYKIIGIRLARKSITVALYDLGGSEYKRQQIPINMAD 121 Query: 121 DLP-LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +R+ I + + +I + PG + + G + M ++ +++ + Sbjct: 122 GSTNAFNRMKELIRDMMQSNAV--GNVIAIGVVTPGPLLRDEGRIGLMTYFPGWEKINIQ 179 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGAS-RGARDVIQVVIDHNVGAGVITDGHLLHAG 238 E L Q +PVY++HD A +A FG + +I V VGAG++ +G + Sbjct: 180 EELMQEFELPVYMEHDAKAGALAHWWFGTPLQEQGVMIYVAAGQGVGAGIVIEGKVFRGS 239 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 EIGH +D G++C CGN GCLE S ++L+ + S + + Sbjct: 240 LGMAGEIGHMSIDYKGQQCECGNRGCLELYCSTSALLQTLKKEHASLKSIWQELKEV--- 296 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 G+ ++ + ++G L ++N FNP +I++G +++A D+L + Sbjct: 297 ------KSGET--REAVRQAAWYLGFGLVNIINTFNPDRIILGDEMAEAGDLLLDTVKSV 348 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 I++ LP +++E + G+A+V Sbjct: 349 IKEHVLPDVYSQLTIELASDDMDTMLVGSAIVAIE 383 >UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2IDS2_BEII9 Length = 428 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 94/403 (23%), Positives = 183/403 (45%), Gaps = 10/403 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL-- 63 Q G + I+ N V I + PVSR + + L+ +++ ++ +L+ L+ E Sbjct: 2 QTGDTELIRAINRFHVLDTIRRFEPVSRAAIGKRTHLSRVTVSSLIATLLQEGLIHEESD 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--D 121 E +G RGRP L + A + + ++S ++FL + +L + + S L Sbjct: 62 ETTNSGTRGRPTNLLGLNPNAAYVVGAKLSMHQVFLIVTNLRADPLARLSLPLHPHQLVP 121 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY-EDVKEMPLGE 180 ++ + + KL ++ + I LPG ID++ GI H P + K + L + Sbjct: 122 DAIVALLDEGVRSVVALAGLKLGQIAGLGIGLPGFIDSKAGISHWSPILAPEPKPVALAD 181 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 + + G+ V I++D + T+AE FG + + + V+++ +G G+ DG L Sbjct: 182 MVRRRLGLAVTIENDANLLTLAERWFGECQENDNFVVVMMEAGIGMGLFLDGELYRGQHG 241 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD-- 298 E GH+++D +G RC CG +GC+E + +IL A+ + + + Sbjct: 242 MGTEFGHSKIDRHGPRCRCGQYGCIEAFTADYAILREAEKIIRTPAAHEGADDTAEAETR 301 Query: 299 --SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 ++ + A G++ + I G +G +A ++N+ +P KI+I ++A D++ P + Sbjct: 302 VATVVRLAREGNVALRQIFATAGEILGLGIANLINIIDPAKIVISGSGTRAVDLIEPALR 361 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGS 398 ++ L + ++ GAA LV A+Y Sbjct: 362 AAVAANTLAVLQNRCEIIFHDQGDEVWARGAASLVLQALYRKP 404 >UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterales RepID=B0K1L9_THEPX Length = 400 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 86/400 (21%), Positives = 183/400 (45%), Gaps = 8/400 (2%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 +KQ N V I + G +SR D++ + L ++++ +V E++ V+E Sbjct: 3 TADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEGPG 62 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL-PLL 125 + GR + L + A + + + I + L DL + ++ E+ ++ + + ++ Sbjct: 63 ASKG-GRKPIILSINNNAGCIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAII 121 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 +R+I ID+ + + + I I +PGI+D + G + P + +++PL E +E Sbjct: 122 ERLIELIDEAILNAPNTIRGILGIGIGVPGIVDYKKGSILMAPNLK-WQDVPLKEIIENK 180 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 + V+I ++ + + E FG + + V +G G+I +G L E+ Sbjct: 181 FKIKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEM 240 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQP----LTVDSLC 301 GH ++ + +C CGN GC E AS ++ + +L S + L+ + Sbjct: 241 GHMTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDII 300 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A +G +A + + +G +G + ++N FNP+ ++IG+ LS A D++ + + + Sbjct: 301 NYAQKGSEIAVEALKEIGRKLGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEK 360 Query: 362 QALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLL 400 + L + +++++ GA +LV ++ L Sbjct: 361 KCLVYRYYKVKIKTSKLQFHAGAIGAVSLVISELFAYPGL 400 >UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017885B4 Length = 403 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 102/407 (25%), Positives = 193/407 (47%), Gaps = 10/407 (2%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G+ I+ N V I GP+SRI+L++ +L+P+++ V+E++ V Sbjct: 1 MNNMKKGNHKLIQALNRSKVLNKIRTEGPISRIELAKKNKLSPSTVASAVQELIREGYVS 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E+ + GR + L + L++ I+ + LA +L +K+ +E+ +A Sbjct: 61 EIGTGSSSG-GRKPILLKFNPDNHFLLAVSITNSVMILARMNLEAKVFAKETHPIAGLQG 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +++R++ +D F Q+ LER I+I +PGI+ +G+VH + +PL Sbjct: 120 EAVIERLLQLMDDFMAG-QEDLERCVGISINVPGIVSDSHGVVHYNTKLR-MTNVPLKRI 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 E G+ ++++D+++ +AE FG ++I + I +G+G++ + HLL Sbjct: 178 FEDRYGMRTWVENDMNSVVLAERRFG-DYAFANLIYISIGDGLGSGILINDHLLRGKHGG 236 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPL 295 E GHT V+ G RC CGN GCL++ S ++ + +M+ + Sbjct: 237 AGEFGHTSVNRSGIRCECGNAGCLDSYISWIAVYSRIITAIATGRPTMIQELSGGDYSKI 296 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 +A +GD LA+D+ V H+G + +VN+FNP+ +++G L+ L ++ Sbjct: 297 VPSVFKEALRKGDKLARDLNEEVAEHLGAAIVNLVNMFNPEALILGGDLAHGNPELLDMV 356 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIR 402 S I + A+P + + + GAA V G L+ Sbjct: 357 SVYIDRHAMPILKDDMVFGLASLGEEDKLMGAASVLLQDLLGFSLME 403 >UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXN7_PAESJ Length = 387 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 171/389 (43%), Gaps = 16/389 (4%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 G IK+ N + + I + G +SR D+S++ L A+++ V ++L+ LV E EI Sbjct: 3 TGDASYIKKMNRSLILKEILKEGMLSRADVSKVTALTRATVSGQVADLLDEELVIETEI- 61 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 E GR + L + EA + + + + +I A+ DL LV+ ++ +L +L Sbjct: 62 EYNQVGRKPIMLSINAEAGYAIGIDLEYDQISFAISDLKGSLVLTDTIKLQSHAYADILS 121 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 + I + R + I I + G++ T+ ++H +P + ++PL LE Sbjct: 122 LLTGQIKHYQERFAASRYGIIGIVIAIHGLVSTDE-VIHYIPSF-GWHDVPLKSDLENAL 179 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 G+ V ++++ + AE +F D+I V + +G G++ + EIG Sbjct: 180 GLQVKLENNANLSAFAERVFFH-HETDDLISVTLYSGIGMGMMINHSFFRGQDGFAGEIG 238 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 H V P G C CGN GC E AS S+ +L + + + +T + Sbjct: 239 HMIVVPGGLPCNCGNKGCWEKYASETSVFQLLRAKKPDA--------DITYAQIGNWIEA 290 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 + A ++I ++ L ++N++NP+ +++ S L + I ++ + Sbjct: 291 KEPDATELIEQFIYYLSIGLNNIINIYNPEVVVLDSELLRIYPDSLQHIESNLNSRV--- 347 Query: 367 YSQHISVESTQFSNQGTMAGAALVKDAMY 395 S + ++ + + + GA + + Sbjct: 348 -SHYREIKISTIGKKSCVLGACAIAIQNF 375 >UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V137_ROSS1 Length = 408 Score = 371 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 100/400 (25%), Positives = 178/400 (44%), Gaps = 10/400 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + + N+ V R+I + +SR D++R L +++ +V E++E L+ Sbjct: 1 MRSLLAKATRQHTRNHNSRLVLRVIYEDEAISRADIARKTGLTRTTVSAVVNELIEQGLI 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 +E ++ GR + L V E+ +L +I AL D+ + S L Sbjct: 61 EETGAGQSSG-GRLPILLRVVHESHCVAALSFEDTQIVGALVDMRGGIQRRVSVPLQGYR 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L + +D + I +++PGI+D G+V R + + + PL + Sbjct: 120 PEDLPGYLTQLLDDLTAD---PAPHILGIGLSMPGIVDPVRGMVRRAVNF-GLVDTPLRQ 175 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L+ +PVY+ + +AE +FG + +++ + I VGAG++ +G L Sbjct: 176 LLQDQYRLPVYLDNAARLTALAEYMFGDGAASGNLVVISIGVGVGAGIVLNGALFSGDGF 235 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQS----MSSMLHGQPLT 296 EIGH V G RC CGN GCLET+ASV +I+ A+ S + Sbjct: 236 GAGEIGHVVVADNGIRCNCGNVGCLETVASVTAIVRAARRLATDPSSRLRSLASAAAAID 295 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 ++ C+A GD I+T VG ++G +A +V L N ++I++ ++ L + Sbjct: 296 FNTFCRALEEGDDGVAGIVTEVGRYLGIAVAHIVGLLNVERIVLTGAIAALGPPLLEAVK 355 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAG-AALVKDAMY 395 S+ + AL + V+ + + G AA+V D + Sbjct: 356 TSLARHALAPLAAMTRVDLVPERHDAVLLGIAAMVLDHEF 395 >UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1E2_JONDD Length = 402 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 172/386 (44%), Gaps = 14/386 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 PG ++++N + I Q G +++++L+ L+ A+++ IV+E+ +VQ Sbjct: 3 AKPPTPGSQSSLRESNRTRIIDAIKQFGGLTQVELAGATGLSAATVSNIVKELTTLGVVQ 62 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKD 120 + GR A + + +++ + +AL D S L+ + L A Sbjct: 63 ---TSPSTRSGRRAQHVTLARTPGLVGAVQFGLRHMRVALADSSGSLLSDHQLPLGADHR 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 LDR I + L +A+ LP ++ +G++ + + Sbjct: 120 ADAGLDRAALLIADMMETFDAESAELQGVAVALPAPVEHSSGLITSPGIMRGWDNVAVAH 179 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 + + G PVY+ + + + E GA+ GA+ + + + +GA +I +G L + Sbjct: 180 VMSERIGKPVYVANSSNMGALGELRQGAAAGAQHTLYIQVGQRIGAALIINGELFWGANG 239 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 S E GHT DP G+ C CGN GCLET+A + +LE + + +T+ + Sbjct: 240 SAGEFGHTTTDPDGQICRCGNRGCLETVAGGNVLLEALR----------VSHGVMTLKDM 289 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 + A GDL I G +G A + N+FNP+++++G L+ IL + ++I Sbjct: 290 MRYARDGDLGCIRAIADAGRAIGLAAANLCNVFNPERVVVGGDLAHTGSILLDPLRETIE 349 Query: 361 QQALPAYSQHISVESTQFSNQGTMAG 386 + +LP+ ++ I++ M G Sbjct: 350 RFSLPSTAECITIVPGSLGADAEMIG 375 >UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=C7M5N9_CAPOD Length = 402 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 188/399 (47%), Gaps = 15/399 (3%) Query: 10 IDQIKQTNAGAVY--RLI---DQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 +++IKQ A +I G + DL + + ++TK+V E++E +V + Sbjct: 6 LEEIKQGIRSASLKKDIICYYINNGDDTLADLGKELNFSVPTVTKMVGELIEDGIVMDFG 65 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEE-SQELALKDDLP 123 E GR + + +++ + IS+ + + L + L+ E+ Sbjct: 66 KMETPG-GRRPNIYGLNQSSGYFIGVDISQKRVHIGLINFKGDLIDEQMDISFEEAHPHE 124 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +R+ I+ F +++ SI I + G ++ + G + E PL E E Sbjct: 125 RFERLCEIIEDFMSHTVVPKDKILSIGINISGRVNPQTG---HSYSFFYFDERPLTEMFE 181 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + G+ V I +D A E + G + +++I V + +G GVI +G L + S Sbjct: 182 EKLGIDVSIDNDSRAMAYGEYIKGRVQAEKNIIYVNVGWGLGLGVIVNGQLYYGKSGFSG 241 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVD 298 E GH C+CG GCLET AS ++ +L+ SS+L + +T++ Sbjct: 242 EFGHITAFENEILCHCGKKGCLETEASGSALYRKFLEKLHNGQSSLLTQQKENEDEITLN 301 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + AL+ D+LA ++I VG +G+ +A ++NLFNP+ ++IG L+ A D L + + Sbjct: 302 DIIDVALQEDILAIELIEEVGNTLGKHVAGLINLFNPELVIIGGTLANAGDYLILPLRSA 361 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNG 397 I++ +L ++ S++ ++ ++ + GA+L+ + + G Sbjct: 362 IKKYSLNLVNKDSSIKVSKLGDKAGLLGASLLARSKFIG 400 >UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobacteria (class) RepID=Q1AZ04_RUBXD Length = 402 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 171/391 (43%), Gaps = 15/391 (3%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 G ++ LI +R +L+ + L A++++ V ++EA LV E + + GRP + L Sbjct: 10 GQIFGLIRSGRARTRAELAAVTGLTRATVSQRVEVLMEAGLVVETKEGVSTG-GRPPMVL 68 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFFI 137 +A L+ + LA+ DL + +VE +L + +L + ++ Sbjct: 69 GFNKDAGVVLAADLGATHCRLAVADLGGRPLVELPADLDIAQGPDAVLGWVQDRFEELLE 128 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG-VPVYIQHDI 196 + E + I + +PG +D G P +P+ E + G VPV + +D+ Sbjct: 129 EAGRSREEVWGIGVGVPGPVDFARGQAVSPPIMPGWDRVPIPERFRERFGGVPVLVDNDV 188 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGK- 255 + + E ++ V + +G G++ G + + +IGH ++ + + Sbjct: 189 NIMALGEHRV-NWSDVEHLLFVKVATGIGCGIVAGGRIHRGERGAAGDIGHIRISGHEET 247 Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDII 315 C CGN C+E +A ++ + + S + G+ A ++ Sbjct: 248 VCRCGNVACVEAVAGGWALAKQLSGLGYPATGS---------RDVVGLVRAGNPAAARLV 298 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 G +G +LA +VN FNP I+IG L+ A + LF I + Q++LP ++H+ + Sbjct: 299 RTAGELIGEVLASLVNFFNPAVIIIGGDLAHAHEQLFAGIRSVVYQRSLPLATRHLQIVP 358 Query: 376 TQFSNQGTMAG-AALVKDAMYNGSLLIRLLQ 405 ++ ++ + G AA+V + + + + Q Sbjct: 359 SELDDRAGIHGAAAMVIEHVLRPETIEEMAQ 389 >UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31B1F Length = 404 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 97/393 (24%), Positives = 178/393 (45%), Gaps = 11/393 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M G + ++ N + + + G +SR +L+R L+ ++++ +V ++ LV Sbjct: 1 MRRAAPSGSLASLRDRNRRLLVDELRRAGLISRAELARRTGLSRSTVSTLVADLQAQGLV 60 Query: 61 QELEIKEAG-NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK 119 E E+ AG GRP V L +E A L + + + + + DL+ ++ + + + + Sbjct: 61 AEREVDGAGPQGGRPPVLLSLERAAGVALGIDFGKRHVRVIVSDLAHTVLADVERPMETE 120 Query: 120 -DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 + ++ + Q + + + +PG ID G V + Sbjct: 121 QSAPEGFEVAVALVHQALADAGVEQTDVIGAGMGVPGPIDISTGEVGSSAILPGWIGLRP 180 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 E + G+ V +++D + +AE +GA R +D + V + +G+G++ G L Sbjct: 181 REDMSARLGLAVRVENDANLGALAELTWGAGRDTQDFVYVKVASGIGSGLVLGGQLYTGA 240 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 EIGH+ VD G C CGN GCLETIAS I EL + G LT++ Sbjct: 241 GGIAGEIGHSMVDERGAVCRCGNRGCLETIASTRQIRELLRPA---------RGADLTIE 291 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + A GD ++ +I +G ++A + N+ NP K+++G LS A D+L + D Sbjct: 292 EVIAHAREGDRASRRVIGDAARAIGVVVAQVCNVLNPAKVIVGGDLSAAGDVLLDPLRDE 351 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 + + A+PA H+ + + + GAA + Sbjct: 352 VSRHAVPAAGGHVEIVPGVLGRRAEVLGAAALV 384 >UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_ANATD Length = 399 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 99/395 (25%), Positives = 189/395 (47%), Gaps = 8/395 (2%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G+ +KQ N V + I +SR +S+L L A+++ + E+++ V E + Sbjct: 2 GNHTLLKQINKLLVLKTILDNKIISRTKISKLVDLNKATVSNLTDELIKEGYVVEKGYGK 61 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLD 126 + GR V L V + + + + I + L + +++ EE + +D LL Sbjct: 62 SKG-GRRPVLLQVNKDVGSIIGIDLGVDYIHIILSNFVGEVIFEEYANMKIGEDKEKLLR 120 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 + I++ + + + + I I +PGII+ E+G V P + + +PL ++Q Sbjct: 121 LLFDLIEKSVKKAPQTPKGILGIGIGVPGIIEKESGTVLLAPNLK-WQNVPLRSIVQQKF 179 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 +PVYI ++ +A + E FG D+I + + +GAG+I D L + E+G Sbjct: 180 NLPVYIDNEANAGALGEKWFGEWGKVSDLIYLSVGIGLGAGIIIDNKLFRGAAGFAGEVG 239 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMS----SMLHGQPLTVDSLCQ 302 HT ++ C CGN GCLE AS ++L + + + Q + S + +T + Q Sbjct: 240 HTTINFQDDVCSCGNIGCLENFASERALLSVIKKLVKQGVEDRYISWENVDEITPSRIIQ 299 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 AA G + + I V +G +A +VN+FNP+ ++IG+ S ++ + + I Q+ Sbjct: 300 AAKEGSRVCRMAILEVAEKMGIGVANLVNIFNPEMVIIGNKASFFGELFLEKLREVINQR 359 Query: 363 ALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYN 396 + A ++ +E ++ ++ + G A+V M + Sbjct: 360 SFIAQFYNLKIEVSKLKDRAVVLGCIAMVISDMLS 394 >UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0W0_HERA2 Length = 386 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 98/381 (25%), Positives = 180/381 (47%), Gaps = 15/381 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + +Q K N V++ I G +SR+D++RL L P +++ V +LE LV Sbjct: 1 MQGLPKKASREQSKLHNYRLVFKAIYDGGAISRVDVARLTNLTPTTVSSNVAILLEEELV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 QE+ + +G G+PA L V + H + L ++ E+ + +L + ++ L + Sbjct: 61 QEVGLAPSGG-GKPATLLSVLDDGRHLIGLDVAGHELRGTIINLRGAIRQRQTLALNGGN 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 +L+++ IDQ + I I PG+I+T G+V + + L + Sbjct: 120 ---VLEQLYQLIDQLLANTHSP---VLGIGIGAPGVINTTAGVVQQAVNL-GWHNLALRD 172 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L + G+PVY+ +D +AE FG+ R A +++ + + +GAG+ +G ++ + Sbjct: 173 LLGKRYGLPVYLANDSHVTAIAEHTFGSQRNAANLVVINVGRGIGAGIFINGRIVGGDAW 232 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 EIGH V P+G C CG++GCLET+AS ++L ++ QP T+ + Sbjct: 233 GAGEIGHVVVQPHGTLCRCGHYGCLETVASTSALLTKL-------DATQPQSQPWTIAEV 285 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 A D + ++ ++G +A +V L N Q I++ L++ + L + S+ Sbjct: 286 QAALAANDPTVRALVDEAAYYLGIAIANVVGLLNAQSIILAGSLAQLGNDLLQPLRRSLA 345 Query: 361 QQALPAYSQHISVESTQFSNQ 381 Q AL V+ + + Sbjct: 346 QHALQTLVAATDVQVSTLGSD 366 >UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridium thermocellum RepID=A3DCE9_CLOTH Length = 404 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 72/396 (18%), Positives = 180/396 (45%), Gaps = 8/396 (2%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + ++ I N ++ I + ++R +++ L+ ++ I ++++ ++ Sbjct: 1 MDKFTKLDLNSITSNNRMNIFNCILEAKEINRAVIAKKVGLSIPAVMSITDDLIQKGIIY 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 + ++ G+ L V + + ++ + + R + + + + +V + S+ + Sbjct: 61 VIGKGKSSG-GKRPELLAVVPDRFFFVGVDVGRTSVRVVVMNNCRDVVYKVSKPTESVEP 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L+++I + + L+R+ I + +PG+I+ G V P + + L + Sbjct: 120 DELINQITEMTMESINESKFPLDRVVGIGVAMPGLIERGTGRVIFSPNF-GWNNIALQDE 178 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L++H V +++ A + E ++ V + + +G+ ++ L + S + Sbjct: 179 LKKHLPFNVLVENANRALVIGEIKNTQPNPTSCIVGVNLGYGIGSAIVLPNGLYYGVSGT 238 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPL 295 EIGH V+ +G C CGN+GC+E+IAS ++I A++ + + S + + + Sbjct: 239 SGEIGHIIVENHGSYCSCGNYGCIESIASGEAIAREARIAIANKIQSSVFEKCEGDLKKI 298 Query: 296 TVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVI 355 + AA GD LA+ I+ ++G+ LAI +N+ +P++I++ L+ + D +I Sbjct: 299 DAKMVFDAAKEGDHLAQSIVEKAADYIGKGLAITINMLDPEQIILCGGLTLSGDFFIDMI 358 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 ++ + + ++ + + T G A + Sbjct: 359 KKAVSKYQMRYAGGNVKIVVGKSGLYATAIGGAWIV 394 >UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRQ2_ALIAD Length = 399 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 82/397 (20%), Positives = 174/397 (43%), Gaps = 14/397 (3%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 +++ N V +LI L SRID+S++ L A+++ IV E++ LV E+ + Sbjct: 6 DASAMRRMNRATVLKLIRDLRTTSRIDISQMTGLNKATVSNIVDELIAEQLVLEVGYGSS 65 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL---- 124 GR + L A + + + + + + ++ + V + + L L + + Sbjct: 66 SG-GRKPILLRFNANAAYAIGVDVQLSHMTTVVCNIRGEPVYRQVRTLGLSEAPDVRAVL 124 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L+ I + + L + PG++D G V+ +P V E + L + Sbjct: 125 LEAIEEELRKAIAAAPPSPYGLLGACLAFPGMVDFRRGAVYYLPSLF-VGEWEILADLGR 183 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +P+++ +D + E + A + ++++ V + +GAG++ +G L E Sbjct: 184 SVDIPLFLDNDANCGAWNEYMAQAMK-LKNLVFVNMGLGIGAGIVIEGKLYRGRDGIAGE 242 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 GH ++P G C CG +GC E AS ++ + S L + ++ + A Sbjct: 243 AGHMTINPMGSACMCGGYGCWEEYASERGLMRYLREAGAD--LSALSLRDSLLEQALEQA 300 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 + +G ++G +A ++NL NP ++++G +++AA + P + I+ +AL Sbjct: 301 QNDNRACIRAFHSLGQYLGLGIANLLNLLNPDEVILGGSVARAATFVLPEVERVIKHRAL 360 Query: 365 PAYSQHISVESTQFSNQGTMAGAALVK--DAMYNGSL 399 ++ I V GA+L+ + ++ ++ Sbjct: 361 -LQNKQIPVRVGS--QHAVAIGASLLAVHETLFASAM 394 >UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PV61_9ACTO Length = 436 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 185/410 (45%), Gaps = 7/410 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQ-LGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 + ++D++ N V I + +SR++L+ L+ +I+ I R +L+A LV Sbjct: 8 AVVRRGTNLDRVGGFNDTVVLDAIRRAEQRLSRVELAAATGLSGQAISNITRRLLDAGLV 67 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 +E +++ G+P L +E + + + + + + L DL+ +++ + D Sbjct: 68 REAGRQKSAGLGKPRTLLELEPTGQYAVGVHLDPAVVTVVLLDLTGQVIARRRAQTPAAD 127 Query: 121 DLPLL-DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +L I + ++ +R+ + I PG ID + G+V P +PL Sbjct: 128 GPDVLIAGIAATVEDVIAEAGVPRQRVVGVGIAAPGPIDVDRGVVVDPPNLTAWHLVPLR 187 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 +AL TG+PV + D++A AE G G + + +GAG++ ++ S Sbjct: 188 DALRDRTGLPVLLDKDVTAAASAEKWAGGPNGRGSFVFFYLGTGIGAGLVIGDEVVRGSS 247 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQ---PLT 296 S++ EIGH VDP G C+CG GC+ + +++ A + L + + Sbjct: 248 SNVGEIGHVIVDPEGPLCFCGRRGCVGESSRPRYLVQQAVDAGVVARGIDLDDRHAVDVA 307 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLS-KAADILFPVI 355 +LC AA G A++I+T + + +++ + NL + ++++ G P + A I Sbjct: 308 FTALCTAATGGPGAAREIVTALAERIAKVVEDIANLLDLERVVFGGPHWDRLAPFFGDAI 367 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRLL 404 +++ ++ L +V T GAA LV D ++ + + LL Sbjct: 368 RETLEERFLVRSVHPFTVTGTALGADVGAVGAASLVLDHTFSPNPSVLLL 417 >UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWZ1_9CLOT Length = 394 Score = 363 bits (933), Expect = 6e-99, Method: Composition-based stats. Identities = 96/398 (24%), Positives = 181/398 (45%), Gaps = 23/398 (5%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 + ++++N V L+ + G SR +LS+ + L ++IT I+ +++A +V E G Sbjct: 11 LKDLRESNIALVINLMRKFGICSRAELSKASGLVQSTITSIIDSLIKAGIVIETGSLV-G 69 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKL--VVEESQELALKDDLPLLDR 127 RGR ++G+ + TE L +R++R LA+ D+ +L + + S L+D + +R Sbjct: 70 GRGRRSIGIRLNTEKLIVLGIRVTRSSYTLAIIDIFGELKNLEKHSITKDLEDP-SVFER 128 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 I+ F +++ ++ + + LPG + + K + E Sbjct: 129 ILEDASTFLLKND---QKPVGVGMALPGPYLINEDTSLFLTN-QGWKSFTFTKKFESRLH 184 Query: 188 VPVYIQHDISAWTMAEALFGA---SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +PV+++ D + M E FG +G + + V VGAG++ DG + + E Sbjct: 185 LPVFVEQDSNVGAMGEWWFGNSEIGQGTK--VFVSTGDGVGAGIVVDGKIQRGALGAAGE 242 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGH ++ G +C CGN GCLE S +IL+ A+ L L +SL Sbjct: 243 IGHMSINFEGPQCQCGNKGCLELYCSEKAILKAAK---------CLSKPILNFESLVTEY 293 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 G+ +I+ G +A + LFNP +++G K D ++ ++R+ Sbjct: 294 RAGNSAVTEIVNRAAEMFGIGIANIAYLFNPGVVVVGGSYKKLGDSFLDQVNRTVRRHIY 353 Query: 365 PAYSQHISVESTQFSNQGTMAG-AALVKDAMYNGSLLI 401 P + Q+I ++ + + + G AA+V D + + Sbjct: 354 PLFYQNIGLQFSALEHDSCLIGIAAVVFDRLLKKPSFL 391 >UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHH0_PETMO Length = 385 Score = 363 bits (933), Expect = 7e-99, Method: Composition-based stats. Identities = 80/397 (20%), Positives = 177/397 (44%), Gaps = 13/397 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + + +K+ NA +++ + GP++R +++R +L P++++ I ++ +++E+ Sbjct: 2 KKASLSSLKENNAALIFQSLRIQGPMTRAEIARETRLMPSTVSYITNLLIHKKVLKEVGS 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 ++ G+ + L + + + ++ + + + + ++ + D LL Sbjct: 62 EDVSRVGKKGILLDINYDDFLFIGYDVGSAYSRVIVSNGKGDILYSKRFVSEKND--KLL 119 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 +I +I + + I + PG ID ENG+V R D+ + + +++ Sbjct: 120 KQIYENIKMVKNKFN-----IIGIGMAFPGYIDPENGVVIRSHNI-DISNFEVKKVMKKE 173 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 +P Y+ H+ + S +D + I +G G++++G +L ++ E+ Sbjct: 174 FNLPAYVDHNTIMMARN-LISNNSHKEKDFCVINIGPGIGVGIVSNGKILRGYKNAAGEL 232 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH V+P G++C CG +GCLET +S +I+ + +++ + + + A Sbjct: 233 GHVTVNPEGRKCNCGKNGCLETESSSKAIVRNYEEISGKNLECEGSCES---KLVYELAK 289 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 +GD A G ++G +A +VN+ NP+K+ I +S + L S Q Sbjct: 290 KGDENAIKAFERAGKYLGIGIATLVNILNPEKVYIAGGVSNGWEFLKDSTEQSYNQHIF- 348 Query: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIR 402 ++ +++E + T GAA Y LI Sbjct: 349 YANKDVTIEVSSIGEYITACGAATYAFEKYVREELIP 385 >UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 Tax=Thermobifida fusca YX RepID=Q47NL3_THEFY Length = 389 Score = 363 bits (932), Expect = 8e-99, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 191/395 (48%), Gaps = 12/395 (3%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 A+ PG ++Q N V + + G +++ +++R L+ AS++ IVR++ +V Sbjct: 5 AQVTPGSQAALRQANRERVIAALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMGVVS- 63 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDD 121 ++E + GR A + ++ +++ + + +AL + +++ EES +D Sbjct: 64 --VRETSSNGRRARAVTLQRPPGVLVAIDFTHSRLTVALGNTDGRVLQEESIAYDVSEDP 121 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + + R + + + + + +A +PG +D G++ + G Sbjct: 122 VRGVRRAVWLTETLLTQARVDRSMVLGVAAAIPGPVDPATGLIGDITSMPHWAGFNPGAE 181 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L++ G+PV + +D + +AE GA+RG V+ V + H VGAGVI G L + + Sbjct: 182 LQERLGLPVSVDNDANLCALAELTEGAARGLEHVVYVKVAHGVGAGVILGGRLFRGMNGN 241 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH +D G+ C CGN GCLET+ +L++ + + L L Sbjct: 242 AGEIGHIGLDERGQVCRCGNRGCLETLVGTPYLLDMLPQQGRVKHGASLV-------DLL 294 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 +AA GD + II GA +GR +A++VN+ NPQ +++G +++A ++L + ++ Sbjct: 295 EAAQEGDPGCRRIIAEAGAALGRGVAVVVNMVNPQMVIVGGEIAEAGELLLDPMRRAMEL 354 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMY 395 AL + + + + + + GA +V D+ + Sbjct: 355 GALGNALTGLRLVTGELGERAALRGALQVVLDSTF 389 >UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SD76_9ACTO Length = 390 Score = 360 bits (926), Expect = 4e-98, Method: Composition-based stats. Identities = 85/382 (22%), Positives = 168/382 (43%), Gaps = 17/382 (4%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVV 80 + R + SR +L L + +++ V +++ A+L+ E + GRP L Sbjct: 13 LLRHVRTGRARSRAELVALTGASRNTVSARVDQLIAANLLAEGGRGWSTG-GRPPTLLQF 71 Query: 81 ETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIISHIDQFFIRH 139 + A L++ + + +A+ DLS++++ + + D P+L + Sbjct: 72 NSRAGCVLAVDLGVTSVDVAVTDLSAQVLATVGHPIDIADGPRPVLAEVDRLAQLVLADA 131 Query: 140 QKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAW 199 + + ++ I +PG ++ +G P + P+ A PVY+ +D++ Sbjct: 132 GLEPADVCAVGIGVPGPVEHSSGRPSHPPIMPGWHDFPIPSAFG-RYECPVYVDNDVNVM 190 Query: 200 TMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD-PYGKR-- 256 + E GA+ +DV+ V + +G GVI DG + S +IGH V P G+ Sbjct: 191 ALGEM--GAAGSVQDVLVVKVGTGIGCGVIVDGRVYRGAQGSAGDIGHIHVTTPDGRLVT 248 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIIT 316 C CG CLE +A ++L A T + + A +GD A +++ Sbjct: 249 CRCGQENCLEALAGGGALLRDAVAAGLPVS---------TTREVVERAAQGDGAAIELVR 299 Query: 317 GVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVEST 376 G +G +LA +VN FNP +I++ +++A L I +S+ ++++P ++ + + + Sbjct: 300 EAGRTIGTVLAALVNFFNPHRIVVTGGVAQAGVPLLAGIRESVYRRSMPLAARALEITVS 359 Query: 377 QFSNQGTMAGAALVKDAMYNGS 398 + GAAL+ + Sbjct: 360 EAPELSGRVGAALMAIEGFLDE 381 >UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida fusca YX RepID=Q47PH9_THEFY Length = 417 Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 95/409 (23%), Positives = 164/409 (40%), Gaps = 9/409 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 + A P +++TN G V R I P SR ++ L A+++ +V E+++ LV Sbjct: 2 VGATEGPAGFQAVRETNLGIVLRTIRTSAPCSRAVVAASTGLTKATVSSLVAELIDRGLV 61 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK- 119 E + GRP + L + L L ++ + LA DL + V+ + Sbjct: 62 CETGLVNERRVGRPGMMLTINGSTLVALGLEVNVDYLALAALDLLEREVLTRHVAFDARA 121 Query: 120 -DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 ++ + + + + L +++ +P ++D +G V P + PL Sbjct: 122 AGPEECAKQLKTLLLETVADPLLRDRPLLGVSVAIPALVDVSSGTVTNAPNL-GWRNFPL 180 Query: 179 GEALEQHT------GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDG 232 + L + G PV + +D + +AE G D++ + + +GAGV+ +G Sbjct: 181 QQRLTELLADTPLAGAPVRVDNDANLGAVAEYRGGHLARTMDLVYLTGEVGIGAGVLMNG 240 Query: 233 HLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG 292 L S E+GH + G C CG GCLE +A +DSIL A L Sbjct: 241 EPLRGASGFAGEVGHIPLLKDGPACACGQDGCLEALAGLDSILRRAVPDLVPEGPVRGSV 300 Query: 293 QPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 V + A GD A + G +GR A +VNL NP I++G + L Sbjct: 301 VESLVAETVRRAESGDATAVQALEDAGEWLGRAAATLVNLLNPSAIILGGYFVPLSPWLL 360 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLI 401 P +++ + S + +E + G A+ + LL Sbjct: 361 PSCREAMAAYSFAPNSGNCRIEPSTLGLSAAARGGAMALIDALDTGLLP 409 >UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PY53_CATAD Length = 422 Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 98/408 (24%), Positives = 176/408 (43%), Gaps = 27/408 (6%) Query: 2 VAENQPGHIDQIKQTN--AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHL 59 + Q I N + + + +SR DL R LA +++ ++ +++ A L Sbjct: 5 AGDTQAAPQTPINLHNLGRVRILQALTSHARLSRADLVRHTGLARTTVSSVIFDLISAGL 64 Query: 60 VQELE---------------IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDL 104 V+E GRP + L +E EA + + L + + + D+ Sbjct: 65 VRESPDVRENSDTAAAAAAGAAPGQRTGRPPLLLRLEPEAAYAVGLDVGHDHVRAIVTDV 124 Query: 105 SSKLVVEESQELALKD-DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGI 163 + ++ LA+ D LD + I + ++ + + + +D G Sbjct: 125 VGTPRWDRTEALAVDDDPRRALDTAVRLIAEAVKDTAVPPHKILGLGLGIACPVDKTTGG 184 Query: 164 VHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHN 223 +H + L + TG+P I +D +A +AE FGA+R A +V+ V + Sbjct: 185 LHAEGIMPGWVGTRPADDLAERTGLPTQIINDANAGVLAERRFGAAREATNVVYVRLAAG 244 Query: 224 VGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLN 283 +GAG++++G +L E+GH V+ G C CG+ GCLET+AS +I L Sbjct: 245 IGAGMMSEGRMLLGHHGLAGELGHVMVELNGAVCRCGSRGCLETVASPAAIAGLLARSWG 304 Query: 284 QSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP 343 Q S+ L + RGD A ++ G VGR L+ V L NPQ ++IG Sbjct: 305 QPADSI---------DLPELLRRGDRGALRVVEDAGEAVGRALSAAVQLLNPQLVVIGGD 355 Query: 344 LSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 L++A + L I ++R+ + + +Q + + + + + GAA + Sbjct: 356 LAEAGEALLEPIRRTLRRGTMGSLNQRLRIVPSTLGDSAGVRGAAALV 403 >UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQX8_SACVD Length = 443 Score = 359 bits (923), Expect = 9e-98, Method: Composition-based stats. Identities = 89/399 (22%), Positives = 183/399 (45%), Gaps = 13/399 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 V L+ +R ++ R + L +T+ V +++ L++E + + GR Sbjct: 25 LATVLDLVRSGAARTRPEIGRRSGLGRTVVTQRVNQLMACGLLEEGALGPSSG-GRAPRE 83 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFF 136 L A L+ + I + + DL+ ++ E S++ +L+R+ +D+ Sbjct: 84 LKFRAHAGVILAAELGATSINVGVVDLAGTVLAEHSEDADIAAGPEAVLERVEEVLDELL 143 Query: 137 IRHQKKLER----LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 + + + + + I LPG ++ G P P+ + L + PV++ Sbjct: 144 DQVRAEQNDPDLTVWGVGIGLPGPVEFATGRPSAPPIMPGWDGYPVRDRLARRYNTPVWV 203 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV-D 251 ++++ + E G++RG RD++ V I +GAG+++ G L +IGH V D Sbjct: 204 DNEVNTMALGELRAGSARGQRDILYVKIGTGIGAGLVSGGTLHRGSQGCAGDIGHAAVSD 263 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-----QPLTVDSLCQAALR 306 C CGN GCLE A ++ + S +L +T + +AA Sbjct: 264 ETEVVCRCGNIGCLEAYAGGAALARDGLSAAQEGRSRLLAEVLADTGTITAADISRAAQS 323 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 GD + +++T G +G +LA +V+ FNP ++IG ++ A D+L + +++ +++LP Sbjct: 324 GDRTSVELLTRAGRFIGGLLATLVSFFNPALVIIGGGVAGAGDLLLAAVRETVYRRSLPL 383 Query: 367 YSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRLL 404 ++ + + + +++ + GAA +V D ++ L R + Sbjct: 384 ATRELRIIRSTLNDRAGLVGAAFMVIDELFTPERLARWV 422 >UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FQW3_SACEN Length = 405 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 167/401 (41%), Gaps = 7/401 (1%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q ++ ++ N V I G VSR++L+ L +++ IVR ++ LV E Sbjct: 7 QGTNLPRVGGFNRAVVLDTIRAHGEVSRVELAERTGLTAQTMSNIVRALMADGLVAENGH 66 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPL 124 + G+ V L V +A+ + L + I L DL+ + + + + + Sbjct: 67 APSTG-GKRRVLLRVVPDAYSSVGLHLDPESITGVLLDLAGGVRLRSRRRVPQDASPATV 125 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + + Q R R+ + + +PG +D ++ V P ++ L + +EQ Sbjct: 126 AAALTRTLKQLVRRSGIDESRVLGVGLAVPGPLDADHRRVLGPPNLPGWDDVALADLVEQ 185 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 G+PV + +D +A + E + V + VG GV+ + S++ E Sbjct: 186 RAGMPVVMDNDATAAAIGERWAAGKARRGSFVYVYLGAGVGVGVVLGDQVHRGTSNNAGE 245 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGH G+ C CG GCLE S+ +I++ L+ + S + +C+AA Sbjct: 246 IGHVNGGGAGRPCSCGKRGCLEAYCSMRAIVD---EWLSATGSPEGDSVSADYEEICRAA 302 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAADILFPVISDSIRQQA 363 GD A ++ +G+ LA +V++ + +++G P L +++ + ++ Sbjct: 303 AGGDATAVRLLRQAATKLGQALATVVSVLDVDHVVLGGPALRHVEELVRSRVEKTLAAHV 362 Query: 364 LPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRL 403 + + V + GAA LV D Y+ L L Sbjct: 363 WAPAVRPVRVRTALIGEDAGAVGAASLVLDHAYSPRLATLL 403 >UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=Meiothermus silvanus DSM 9946 RepID=C1XPR1_9DEIN Length = 777 Score = 357 bits (918), Expect = 4e-97, Method: Composition-based stats. Identities = 83/404 (20%), Positives = 176/404 (43%), Gaps = 21/404 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 ++ ++ G ++K+ N A+ + ++R +L+R L ++I+ ++ +++ LV Sbjct: 380 MSPSRKGDPLEMKRINRRAILEALKGSRSLTRAELARRLGLTKSTISSLMDQLVSEGLVL 439 Query: 62 ELE--IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK 119 ++ GRP V + + L + + D + L+ E + Sbjct: 440 SRGDTLRPKSQLGRPGVEVGLNPAGAVALGAELGVENSVVLAVDWTGTLLFREEWGADPR 499 Query: 120 DD-LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 L+R+ RH + + + LPG++D G +H P ++ + Sbjct: 500 TPLSERLERLTQVTRHALQRHPEA----LGLGLALPGVVDA-RGWLHYAPNL-GWRDFSV 553 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 EAL+ PV+I++D ++ E F +G + +++ +G G++ G +L Sbjct: 554 AEALQARLPFPVHIENDANSSAAGEVFFTPRQGQ--LAYLMLGTGLGVGLVHAGTVLRGA 611 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + + E+GH + KRC CG CLET S+ ++LE L G+ Sbjct: 612 NGAFGEVGHW-LGSSPKRCRCGRVSCLETEVSLRAMLEHYHA---------LGGKAKDFW 661 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + + A G LA + + +G +GR++A + ++P+++++G ++A D L + + Sbjct: 662 EVLKQAQTGHRLAVESLAELGRALGRLIANLAVAYDPERVVLGGAGAEAWDYLQQPLRQA 721 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIR 402 + + A Q + V+ + F + GAA + + S +R Sbjct: 722 VEEHAFLRQHQRLEVQPSLFGHLAPAMGAAALVLHSFLASGGLR 765 >UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK-family transcriptional regulator) n=2 Tax=Proteus mirabilis RepID=B4EVY3_PROMH Length = 403 Score = 357 bits (918), Expect = 4e-97, Method: Composition-based stats. Identities = 194/401 (48%), Positives = 287/401 (71%), Gaps = 1/401 (0%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 P HID +KQ N G V+RLID+ GP+SRI LS+ A LAPASITKI RE++EAHL+ E E Sbjct: 4 PPSHIDHVKQFNLGTVFRLIDEHGPISRISLSKKATLAPASITKITRELVEAHLIHETEF 63 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 G RGRPAVGL +E++ W +L +R++ G + +LR+L ++LVVE++ + ++ L Sbjct: 64 PGLGFRGRPAVGLKLESKGWQFLCIRVNNGSLLFSLRELDNQLVVEDTFDFPKQNSDAFL 123 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 ++ ID FF R+Q ++ERLT+I+IT+ I+D +G+++ P+Y ++++PL + +++ Sbjct: 124 HHFLAAIDTFFQRYQSRVERLTAISITMNAIVDPISGVIYSSPYYA-IQDIPLADKIQEK 182 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 TGV V++QH ++AWTMAE+L+GA++ D++Q+VID VGAGV+T+G LH+ S S VEI Sbjct: 183 TGVAVFLQHSVTAWTMAESLYGAAKNNTDILQIVIDDIVGAGVVTNGKTLHSNSHSAVEI 242 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GHT+V +CYCG GCLET S+ +++ AQ ++ +S+L+ P+TV++LC A L Sbjct: 243 GHTKVIDSQTQCYCGAKGCLETEISIPQLIKKAQHLAQENPTSILNQYPITVETLCDAVL 302 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 GD A DII V +G ILA+MVN+FNPQKILIGSPL +A LFP+I SI+ LP Sbjct: 303 IGDKQALDIINLVAQRLGFILAVMVNIFNPQKILIGSPLCRAKSALFPLILSSIQHHVLP 362 Query: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 Y+ ++ +E T+ N+GT+ A+LVK+A+YNGSLL+ L+QG Sbjct: 363 RYAHNLVIEETELRNKGTLPAASLVKEALYNGSLLLELMQG 403 >UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales RepID=C6Y2I3_PEDHD Length = 408 Score = 357 bits (917), Expect = 5e-97, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 180/381 (47%), Gaps = 10/381 (2%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVV 80 V +G + DL + L+ IT ++ +++ L+++ E+ GR + Sbjct: 28 VISYFANIGNATIADLCKELNLSAPKITNLLSDLIADGLIKDYGKVESTG-GRKPNLYGL 86 Query: 81 ETEAWHYLSLRISRGEIFLALRDLSSKLVV-EESQELALKDDLPLLDRIISHIDQFFIRH 139 ++ ++ + I + I + L +L L+ E L ++ L+ + I+ F Sbjct: 87 VPDSAFFIGVDIKQNHINIGLSNLQKNLIRITEKIPYHLDNNKESLEALCKLINDFIGEL 146 Query: 140 QKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAW 199 E+L + I L G I+ G + E PL + +E G+ V++++D + Sbjct: 147 TIPKEKLLGLGINLSGRINYATG---YSYSFFYFNEEPLSKIIESKIGIRVFLENDSKSM 203 Query: 200 TMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYC 259 E G ++V+ + +DH +G G++ +G L + S E GH + C C Sbjct: 204 AYGEFSAGVVEAEKNVLFLNLDHGIGLGILVNGQLYYGKSGYSGEFGHIPMFDNEIICRC 263 Query: 260 GNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALRGDLLAKDI 314 G GCLET AS ++ + + RL++ SS+L + L ++ + AA+ D+LA ++ Sbjct: 264 GKKGCLETEASGWALTRMFKERLSEGSSSILSQNNTDTEDLKMEDIINAAIHDDVLAIEL 323 Query: 315 ITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVE 374 I +G ++GR +A+++NLFNP+ +++G L+ + + I +I + +L +Q +++ Sbjct: 324 IAKIGDNLGRGIALLINLFNPELVILGGSLAATEEYIRLPIKSAINKYSLSLVNQDTNLK 383 Query: 375 STQFSNQGTMAGAALVKDAMY 395 ++ + + GA L+ Sbjct: 384 MSKLGERAGIIGACLLVRNRL 404 >UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZX8_DEIGD Length = 408 Score = 356 bits (916), Expect = 6e-97, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 171/382 (44%), Gaps = 13/382 (3%) Query: 35 DLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR---------GRPAVGLVVETEAW 85 DL+R L+ ++I+ IV E+++A LV+E + AGN GR A L + A Sbjct: 2 DLARELGLSRSAISSIVTELMDAGLVREAGQRVAGNGASRGAGGPVGRRATLLSLNARAA 61 Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLPLLDRIISHIDQFFIRHQKKLE 144 H L++ + + L DL + + + + + + E Sbjct: 62 HLLAVDLGASHARVDLLDLRCTTLATRTAQHDILRGPAATYALLKELAQAVLEEAGVPRE 121 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 R+ ++ +PG +D G V + P + LE+ +P + +D + +AE+ Sbjct: 122 RVAAVGAGVPGPVDYATGCVVQPPNMPGWDGENVMAGLERVLDLPTRVDNDANLGALAES 181 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 FG RGA D+I V + +GAGV+ G L EIGH ++ G GN G Sbjct: 182 RFGVHRGAADLIYVKVATGIGAGVLLGGRLHRGVRGGAGEIGHISINEQGPVGRSGNPGS 241 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGR 324 LE+ A+ +LE A+ R + S L PLT+ L A D LA+ + G H+G Sbjct: 242 LESYAAAQVLLETARARRAGGVPSTL-PDPLTLADLIAFANT-DPLARAVWAEAGHHLGV 299 Query: 325 ILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTM 384 ++ +NLFNP ++IG L++A ++ + +S + + + ++ + + Sbjct: 300 AISTALNLFNPSAVVIGGRLAQAGEVFLHAVRESALSRTMRINADRARIDLSTLGEGAGV 359 Query: 385 AGA-ALVKDAMYNGSLLIRLLQ 405 GA A++ D ++ + L L + Sbjct: 360 LGAGAMLLDHLFTPAGLRHLYR 381 >UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS614 RepID=A1SG81_NOCSJ Length = 400 Score = 356 bits (914), Expect = 9e-97, Method: Composition-based stats. Identities = 103/399 (25%), Positives = 177/399 (44%), Gaps = 16/399 (4%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 Q G + +++ N V I+Q G +SR DL R L+ ++++ +V ++L+ ++ E Sbjct: 1 MAQGGSLGELRAANLALVISTIEQTGALSRADLMRRTGLSRSTVSSLVVQLLDQGVLVER 60 Query: 64 ---EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 G GRP + L + + + + +AL S +V+E S L + D Sbjct: 61 LDRGTPYKGRSGRPPILLELAALTGVVAGIDVGHRHVRVALARPDSTIVLERSVALDVDD 120 Query: 121 -DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +DR+ + +D+ +L + + +PG +D + + + Sbjct: 121 SPRESMDRVATLLDELLAESGHELSDVRGAGLGIPGPVDRGGRM--TSGILPTWRGLQPA 178 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L + TGV + +D E +GA+ G RDVI V +GAG+I DGHL+ + Sbjct: 179 AELAERTGVIARVHNDAHLGARGELAYGAACGHRDVIYVKASTGIGAGLIVDGHLVTGAT 238 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 E+GH QVD G C CG+ GCLET S ++EL Q + + LTV Sbjct: 239 GIAGELGHVQVDVNGVMCRCGSRGCLETEVSGPKLVELLQPA---------YDEQLTVPR 289 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + + A GD A + G +GR+LA + N+ NP+++++G A L I D++ Sbjct: 290 ILELAQSGDAGATRALNDFGRRIGRVLANIANMLNPEQVVVGGGFGAA-PALQAGIRDAL 348 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGS 398 + + P + I+V + + GA V Sbjct: 349 DRYSQPTTAAAITVLGGALGERAEVMGAIAVALDPLEAP 387 >UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TWQ2_9RHOB Length = 405 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 167/394 (42%), Gaps = 12/394 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M ++ P + V + I G +SR D++R +PA++T +L+A L+ Sbjct: 1 MTSDFAPAGTLDARDATRLRVLQCIRSAGTISRTDIARALDSSPATVTSACGALLDAGLI 60 Query: 61 QELEIKEAGN--RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL 118 +E + N RGRP V L + EA+ L+++R I + + D + L Sbjct: 61 REERRMPSENVQRGRPRVMLQINGEAFAVAGLKVAREAIVVMIVDFRGDEIGSFVSPLEA 120 Query: 119 K--DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEM 176 D L+ + +D RH R+ +++ +PG ++ E G +H + + + Sbjct: 121 SCMDPDGLVQEVRRALDAACARHGLDTARIAGLSLGIPGFVNGETGFMHWSSSVTE-RNV 179 Query: 177 PLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLH 236 +H P ++ +D + AE LFGA RG + + V ++H VG G+I +G L Sbjct: 180 DFAPLFRKHLPCPTFLDNDANLVAKAEHLFGAGRGLSNFLVVTLEHGVGMGIILNGELYR 239 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT 296 E+GH +V G C CG GCLE +++ + + + Sbjct: 240 GERGCGAELGHMKVQFGGALCQCGQRGCLEAYVGDYALVR-------DTSTGQQSDAAKS 292 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + + AA GD LA++++ +G LA +VNLF+P+ I++ + Sbjct: 293 IQDILHAARNGDRLAREVLDRASQILGVALANLVNLFDPEHIVLARSRPPFDHPYTEAML 352 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 S+R+ + + + GAA + Sbjct: 353 TSLRRNTVQVDAPLPEITVRNLDEMMWAKGAAAL 386 >UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRA6_9BACI Length = 387 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 172/388 (44%), Gaps = 11/388 (2%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 ++KQ N + + + QL P+SR DL+++ L A+++ +V E+++ H ++++ + ++ Sbjct: 5 QLEVKQQNKKLILKTVYQLEPISRADLAKVLSLTKATVSNLVDELVQEHYLEQVGLGKSS 64 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRII 129 GR + L + +A + +S+ I I L DL ++ + + + I Sbjct: 65 G-GRRPLMLKINEKAGYTISVDIGVNYIRSILTDLKGGIMKKAVETTDTNVYEDTMRYIE 123 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 + ++ L I +PG++D++ G V P D +E + + E V Sbjct: 124 TMVNNLINDMDDAPFGLVGIGFGVPGLVDSD-GTVISTPNL-DWQESDIRKRFEAAFDVH 181 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V ++++ +A E FG + I + +G G+I DG L + E+GHT Sbjct: 182 VIVENEANAGAFGEKSFGEGISSDHFIYISGGIGIGVGLIFDGVLYRGRNGFTGELGHTI 241 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 + G C CG GC E AS IL+ + LT++ A D Sbjct: 242 IQMDGLTCSCGKKGCWERYASELYILKEYEKLKGMPW------HQLTLEEAVTEAAA-DE 294 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 + I H L ++N FNP+KI++G+ L++A + PVI + I + A+ ++ Sbjct: 295 DVRAIFHRAARHFAIGLTNIINSFNPEKIIVGNRLTQAEQYMLPVIEEVIAETAISPIAK 354 Query: 370 HISVESTQFSNQGTMAG-AALVKDAMYN 396 + + T+ G +A + ++ Sbjct: 355 GVGIHFNNTDQLATVLGLSAFSIERFFD 382 >UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH51_KOSOT Length = 408 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 79/397 (19%), Positives = 166/397 (41%), Gaps = 12/397 (3%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + G IK+ N + + I + + R +++ L+PA++TKI E++ +V E Sbjct: 9 KRRGSKHLIKEINEKLILKTIYENKKIDRASIAKFTGLSPAAVTKITAELINRGMVLEAG 68 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 E+ GR + L + + +L ++I G + L + D + +V + D + Sbjct: 69 SAESSG-GRKPILLSLNPKFGQFLGVKIGVGYVELVITDFTCTIVESARCDTESSDPGTI 127 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++ I + ++ K L I I + G++D++ GIV F +++P+ L++ Sbjct: 128 VNVIKNCWEKCRQE---KQSILLGIGIAVSGVVDSKEGIVRDS-FLLGWRDVPIASLLKE 183 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 V + +D+ ++ M+ G ++ + + + + +G +I DG + + + E Sbjct: 184 VFKCEVLVMNDVDSFAMSHLWLGKAKDHSNTVVITLGVGIGGALIIDGKIHN-AKGGVGE 242 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELA-----QLRLNQSMSSMLHGQPLTVDS 299 IGH V G +C CG++GCLE AS ++ + +L + S+ + ++ Sbjct: 243 IGHMTVVKDGAKCTCGSNGCLEAEASFGALAKKISSITESKKLKELYKSVKQSESSEIEY 302 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L +A R + VG L ++N+ P +LIG + + Sbjct: 303 LREALKRDRKAFNHVFEEYAVLVGIALKNIINMLAPDYLLIGGEALEFQEKFLNKAIQYA 362 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVK-DAMY 395 ++ A + + G V D ++ Sbjct: 363 QKNAFGKLGEKVMFNVDDLGEVAWNLGVIFVLMDNLF 399 >UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales RepID=Q0FFU4_9RHOB Length = 421 Score = 354 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 92/381 (24%), Positives = 171/381 (44%), Gaps = 6/381 (1%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE-IKEAGNRGRPAV 76 ++ L+ G ++R ++R ++P S+T + E++ ++E+E +RGRP V Sbjct: 34 RQQIFELVRATGRIARAKIARTLDISPGSVTALTAELISDGFLREVEETSRETSRGRPPV 93 Query: 77 GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL--ALKDDLPLLDRIISHIDQ 134 L + +A + + +++S L D + SQ K LL + I + Sbjct: 94 ALELVPDALYVIGVKLSDELHTATLTDFGGNALASASQITTADKKSADELLTETEAIIRK 153 Query: 135 FFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQH 194 + +++++I + + GI++ E G+V P E++ + PLG+ + PV I + Sbjct: 154 VCKSAKISQKKISAIGVGISGIVNYETGVVAWSPLLEEL-DTPLGDIFSTYFKTPVCIDN 212 Query: 195 DISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYG 254 D + T+AE FGA R + + I+H VG G ++D L S +E+GH++V G Sbjct: 213 DANVLTLAELWFGAGRALSNFAVITIEHGVGMGFVSDNRLFRGAHSMGLELGHSKVQLDG 272 Query: 255 KRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDI 314 C CG GCLE + ++ A L SS + SL + A GD + I Sbjct: 273 ALCRCGQRGCLEAYLADYALAREASTALIT-PSSKRQDLNDYLKSLYEMAKLGDQASLKI 331 Query: 315 ITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVE 374 G ++ L+ +++LF+P+ I++ + + + +R AL +E Sbjct: 332 FKRAGRYLAVALSNIIHLFDPKLIILSGKPMQYEFLYDEEMQIEMRSLALYKSRFDTQIE 391 Query: 375 STQFSNQGTMAGA-ALVKDAM 394 + + GA AL + Sbjct: 392 IQSWGSMVWARGATALALTEL 412 >UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5U1_SORC5 Length = 408 Score = 354 bits (909), Expect = 4e-96, Method: Composition-based stats. Identities = 105/391 (26%), Positives = 185/391 (47%), Gaps = 5/391 (1%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 A ++ + ++ N V L+ + GP+SR +L+RL+ L +++ I+ E+L++ V++ Sbjct: 4 ANDKTANNRTPRELNRSLVLDLVQEHGPISRTNLARLSGLTKPTVSAIIEELLDSGSVRD 63 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 + + GRPA L ++ +L + I + +A+ D +L Q L+D Sbjct: 64 VGTE--SRGGRPARLLEFNDDSAAFLGIEIGVEQTAVAVADARGRLRARLEQPTVLRDPH 121 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 + I+ + + +RL LPG+I+ +G+ P + P+ L Sbjct: 122 RTVRDIVELLPKVLQLSGVPRKRLRGACAVLPGLIERPSGVCVLAPNL-GWERFPVRAEL 180 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + + V + + A +AE GA+RG + + + VGAG++ DG L Sbjct: 181 SRALRMQVPVYNLPQAAAVAEGELGAARGHASYVWIYVGLGVGAGLVADGRLFFGMQGYS 240 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 EIGH +V G C CG GCLET ASV ++ A+ +S +P V ++ Sbjct: 241 GEIGHCRVADDGPPCGCGRRGCLETFASVMALRRAAEAASARSPQLAALARPHAVSAVAS 300 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 AAL GD A+ I GA + R +A+++NL NPQ I++G L A DIL + D + + Sbjct: 301 AALAGDESARAIFHDAGAQLARGIAVLLNLLNPQLIVLGGELLAAPDILLAGVRDGLPRH 360 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 A+ + V ++ ++ + GA L+ Sbjct: 361 AVRGA--DVPVVASPLGSEAGVLGALLLARE 389 >UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899E8 Length = 386 Score = 354 bits (909), Expect = 4e-96, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 175/392 (44%), Gaps = 13/392 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + D +K+ N V+++I P+SR +++ ++P ++++IV E+ E V E E Sbjct: 2 KKHDQDFMKRQNRLTVFQIIKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEE 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL- 124 + + RGR + + + A + + + R + + D+ ++ S + + + Sbjct: 62 QASAGRGRKSSLIRLLDTAVISIGVELDRHQANIGFIDVQGNVLCSGSFSRSSDETADVT 121 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + RI I++ R+ I + LPGIID + GIV+ K + L E L++ Sbjct: 122 VTRIAETIEELIAECDIDRRRVVGIGVGLPGIIDVDAGIVNFSVQL-GWKNVGLAERLKE 180 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 TG+ + +++ +AE L G++ G+ + + + VG+ +I +G + ++S E Sbjct: 181 LTGLQAVVDNELKVKALAEQLKGSAYGSNRTVLLGFGNGVGSALILEGEIYRGVTNSAGE 240 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGHT VDP G C CG GCL+T ++ S+L A T++ L Sbjct: 241 IGHTTVDPEGMMCDCGKAGCLQTYINIPSLLSEASKIKPVR----------TIEELFAER 290 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD-SIRQQA 363 G A +I A++ + +V+++NP +++ ++ I+D Q Sbjct: 291 RAGTRWASYLIDRALAYMAITINNVVSMYNPDSVILSGEFLDKFPEVYEEITDLCYSQYI 350 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 S+ ++ G G+ LV Y Sbjct: 351 WEPLQDSFSIVRSELHEHGVTIGSGLVAQDRY 382 >UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZA5_JONDD Length = 425 Score = 353 bits (907), Expect = 8e-96, Method: Composition-based stats. Identities = 87/414 (21%), Positives = 182/414 (43%), Gaps = 14/414 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M A + + + V I G +SR+ ++++ L A+++ +VR++L+AHLV Sbjct: 1 MAATARTLNTTG----STSVVLDAIRAAGTISRVGIAQVTGLTGATVSTVVRKLLDAHLV 56 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-K 119 E+ E+ G+P V L + A + + + + G I A+ +L+ V ++ Sbjct: 57 IEIGRAESTG-GKPRVLLELNPTARYAVGVHLDHGAITYAVTNLAGAPVARLARPGPGNA 115 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 ++ R+ I+ ++L + + PG + + G+ PF ++ PL Sbjct: 116 SPADVVIRMADEINMLVESIGIARDKLLGLGLVSPGPLSSRAGMHLTPPFMRSWEDFPLD 175 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L +PV +++D +A + E G ++ + + +GAG++ +G S Sbjct: 176 TQLADVAQLPVLLENDATAAAIGEYWSGGTQREESFAALYLGTGLGAGIVINGTAYRGTS 235 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELA----QLRLNQSMSSMLHGQPL 295 + EIGHT + G C+CG GC E +A +++ A ++ ++ ++ P+ Sbjct: 236 GNAGEIGHTCANIDGPECWCGARGCFEALAGPAAVVNEAYSDPRIVTAAALDTLGDHTPI 295 Query: 296 T--VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGS-PLSKAADILF 352 T ++ +A+ GD ++ ++ +VG + NL + + +++ + A+ I Sbjct: 296 TQRFAAIARASRMGDTPSRQLLERSARYVGVAAQSVANLLDVRMLVLTGSSFAAASHIYV 355 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAG-AALVKDAMYNGSLLIRLLQ 405 P I D++ + + V+ +Q + G AALV A + L Sbjct: 356 PAIRDTLAASFFARDNHAVHVQLSQSAETAPAIGAAALVLQAQFVPERSTSLAA 409 >UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus sp. SG-1 RepID=A6CIT4_9BACI Length = 372 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 165/397 (41%), Gaps = 32/397 (8%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + G + IKQ N + + PVSR LSR L+ ++++ IV E+++ L+ E Sbjct: 2 KKGDYELIKQINRRLILSAVRNQQPVSRAALSRELGLSKSTVSGIVDELIKKKLIIEEGQ 61 Query: 66 KEAGN-RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 E+ GR + L + + + I +I L + DL +++ +E Sbjct: 62 GESTKEGGRKGIQLFFNPKCSFGIGVDIGGTKILLVVTDLDGEIIFKEEHPTEKNP---- 117 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 ++I+ I F R L+ ++++ I +P II+T+ GIV P + ++ + L++ Sbjct: 118 -EKIVKLIYNFIDRSNTPLDLISAMGIGVPSIINTKEGIVVDAPALK-WRDYRFLDFLKE 175 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 P ++ +D++ E FGA R D++ + I VG+ V +G ++ + S E Sbjct: 176 KFEFPCFLNNDVNCAMYGELRFGAGRDCSDLLFIAIGTGVGSAVYANGQIVEGATFSAGE 235 Query: 245 IGHTQ----VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 IG+ V+ G + G G E S ++ + +T L Sbjct: 236 IGYLVDKSDVE-NGYKRVPGEFGAFENKTSGTALTKY----------------GMTPKEL 278 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 +GD A++II ++ +A L N K++IG +S++ + I Sbjct: 279 FDQYYQGDREAQEIIKDFTLNLAIAIANASCLLNSSKVIIGGGVSRSMVGIIQHIQRLAN 338 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNG 397 Q + +ES+QF GA M Sbjct: 339 QWTPFF----VEIESSQFQTDAGAIGAVAYAFEMLES 371 >UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifidobacteriaceae RepID=B3DR20_BIFLD Length = 389 Score = 351 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 84/394 (21%), Positives = 172/394 (43%), Gaps = 14/394 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 +A G +++ N + I + G +++++L+ + L+ A+++ +V ++++ Sbjct: 1 MATRLFGSQTSLREANRANLLASIHKFGAMTQVELAEVTGLSTATVSTLVHQLVDED--- 57 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKD 120 +LE K GR A + + + L I+R + L++ D S ++ E + L Sbjct: 58 QLETKSTVRNGRRATLVTLARHQGLGVGLWIARRHLTLSIVDFSKSIIAEHTLPLPLGHK 117 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L+R + I++ + L I + + + T + + + + Sbjct: 118 ADTTLERAMLLINETLSSIDAEASELVGIGVAVAAPVATSDHTIAIPGILPGWDGVDITS 177 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L VPVY+ +D + E+ G + G R+ + + VGAG++ +G ++H + Sbjct: 178 PLRTAFNVPVYVDNDANFAAYGESRMGVAAGKRNFVYISASDGVGAGIVINGEIMHGVTG 237 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 EIGH QVDP G C CGN GCL+T+ + + +++L + +T+D L Sbjct: 238 LAGEIGHIQVDPLGAICSCGNRGCLDTVVAENRLVQLLS----------VTHGNMTLDDL 287 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 A GD + II +G++ A + +P+ I++G L+ D+ +++++ Sbjct: 288 VSFANEGDPGCRRIIADAAVRIGQVAADLCISVDPEVIVLGGKLAMTGDVFIQPFNEALQ 347 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAM 394 + P I V + + G AL Sbjct: 348 RMLFPDAVAPIDVLVSSHPDDNCALGGALCAIEF 381 >UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7D4_DYAFD Length = 407 Score = 351 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 189/388 (48%), Gaps = 9/388 (2%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 K ++ + Q G S +++L + S T IV +++ + E A GR Sbjct: 16 KNRIRSSLLLHLYQNGDTSINKMAKLFHASIPSATGIVNDLMREGWITETGTGPA-RAGR 74 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHID 133 P V + ++ + L + I+R + L + DL ++L+++ + L D L+ + + D Sbjct: 75 PPVLYGLNSKKYLTLIMDINRHDTQLVIFDLHNQLILKRKVAIRLDDSANFLEELFASTD 134 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQ 193 F + +L I +++PG+I++ GI +PL L++H +PV + Sbjct: 135 DFLKSNNISHSKLWGIGVSMPGLINSSQGINLTYLNLTP-PGVPLVTYLKEHFDLPVCLF 193 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 +D A T+ E FG + V+ + ID VG G+I +G + + S E+GH QV P Sbjct: 194 NDTKATTIGEHRFGYAVDKSQVLTINIDWGVGLGIIINGEVFNGASGFAGELGHIQVKPD 253 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTVDSLCQAALRG 307 G C+CG GCL+TI S +++ A+ ++ +++L + L + +A G Sbjct: 254 GMLCHCGKVGCLDTITSAIALIRQAKEGIHSGRATILKQIVNNDLEQLETSHIIEAVHAG 313 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D + D+++ VG +G+ LA V+LFNP+ I++G L++A + I +I + L + Sbjct: 314 DEFSIDLLSTVGTELGKGLATAVHLFNPEVIIVGGLLAEAGPFISNPIEQAINKYCLSDF 373 Query: 368 SQHISVESTQFSNQGTMAGA-ALVKDAM 394 +S+ ++ ++ + G A + D + Sbjct: 374 KNPLSIHISKLGSKARLLGTQAYLFDNL 401 >UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LF86_9FIRM Length = 381 Score = 351 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 157/392 (40%), Gaps = 22/392 (5%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE-- 64 G+ + I+ N +V R I G +SR ++ L A+++ IV+ +L+ ++ E E Sbjct: 3 TGNQELIRDINTQSVLRTIITHGAISRASIASELGLTKATVSAIVQVLLDRGIIFEAESS 62 Query: 65 -IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 G +GR + L + + + +++ ++ I L +L K Sbjct: 63 DTAPEGRKGRKPIFLQLNKDCGYVVAIDLATENITLMTANLLGGNCRLTQFPTPEKT-EL 121 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 LL + ID+ K L IA+ + G++ + +P Y ++ L Sbjct: 122 LLPLLKERIDRAINALPKTRYGLLGIALGIHGVVHHNK--IIFLP-YSSFGDIDFVSRLG 178 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 GVPV ++++ + + E +++ + + +GAG+I L+ + Sbjct: 179 DIYGVPVVMENEANLSALGEWA--HCHDTNEMLYISVHSGIGAGIIMKNQLVKGKNGYAG 236 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E GHT ++ G+ C CGNHGCLE AS ++ S G P+ + + Sbjct: 237 EFGHTIIEVDGRPCPCGNHGCLEQYASERALFAEL---------SAQKGYPVNAEVYGRL 287 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 +GD A + ++ + ++N FNP I++ S L+ + + D I Q Sbjct: 288 YRQGDPAAVRAMQQFIKYMSVGINNLLNTFNPDIIVLNSSLT----MCHAGLCDDIAAQL 343 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 + + + + + G + + Sbjct: 344 HNNMKDYCRLVPSTLQDTAVLLGGVYLIRERF 375 >UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=Actinomycetales RepID=D1BAX4_SANKS Length = 410 Score = 351 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 81/399 (20%), Positives = 175/399 (43%), Gaps = 7/399 (1%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + ++ + AV R L +R +LS+ L+ A+++ +V+E L A +V + Sbjct: 2 TRRTAR--DLRSDSRSAVLRAFFSLRTATRQELSQHTGLSVATVSTLVKEFLTAGVVH-V 58 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK--DD 121 E + GRP L ++ + + + ++ + + DLS S L Sbjct: 59 EAVVSSGVGRPLEQLRLDPSRGYIVGVDVAETYVETTVFDLSLDPRGTVSVPLDEHQNSP 118 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 ++D I + + + ++LPG + + G+ P + ++ + E Sbjct: 119 QYVVDGIRLAVHGVLALAGVSTSSVVGVGVSLPGQVQPDLGVSVFAPNWA-WHDVRIKEL 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L G+ V++ + + A +AE FGA R RD+ V + VG+G++ +G L+ S++ Sbjct: 178 LTAELGMHVHVDNPLKAIAVAELWFGAGREHRDLAIVNLGTGVGSGLVINGELVRGVSNN 237 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E GHT + G+ C CG GC+E V+ + + + Q VD++ Sbjct: 238 AGEWGHTLLALDGRLCRCGRQGCVEAYVGVNGMKATLSEIQPDHPALLQQEQRRFVDAVY 297 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAADILFPVISDSIR 360 + + GD + +++ ++ L +VN+ NP+ +++ +++ D L P++ I Sbjct: 298 EGVVAGDPVFVELVDETARYLAASLGDLVNMINPEHVVLTGWTVARLGDWLIPLVRAKIP 357 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSL 399 AL + ++V ++ ++ G + + + ++ Sbjct: 358 DAALRSSVAVLTVSASSLASSTVALGMSTLTLEHFLAAV 396 >UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZML3_9FIRM Length = 410 Score = 351 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 98/399 (24%), Positives = 176/399 (44%), Gaps = 16/399 (4%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + + KQ N G +++LI +RI+LSR LA ++T IV E +E +V+ Sbjct: 23 MKKGNGKNSITSKQFNRGLIFQLIATGTCNTRIELSRRTGLAKTTVTNIVAEFMEKGIVK 82 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E E + GR + L V +A + + + R I L L ++ E+ E Sbjct: 83 ECEEELTEVCGRNPIILKVADQAPKIIGILVFRTNIQAVLCSLDMQIFRTETIEFGELTG 142 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L+ ID+ + + I I G +D NGI+ P + VK +P+ EA Sbjct: 143 DILIQNAFELIDRMMEE----EKNILGIGIASIGPVDIRNGIILNPPRFYGVKHVPIKEA 198 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 +++ +PVY HD + +AE LFG + +D + + + + +G+G + G + H+ Sbjct: 199 IQKKYNLPVYFDHDNNCAALAEKLFGIGKAEQDFLLLAVSNGIGSGFVCGGEVFHSHRGF 258 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+GH ++ G +C CGN GCLE AS + E + + L+ + Sbjct: 259 ETELGHVSINCKGLQCSCGNRGCLEMYASSYVVREKLKKI------TGLNLPYADYFKIH 312 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 +DI+ + + L ++N+ P+ I++G + + I Sbjct: 313 DR-----PEVEDILEEMIQDISAGLVSIINMLQPEMIVLGYDGIDWPEDYVKKLEILIND 367 Query: 362 QALPAYSQHISVESTQFSNQGTMAG-AALVKDAMYNGSL 399 + + +I V+ F Q + G AALV ++++ G L Sbjct: 368 RKIAQDGWNIPVKKAYFGKQAQLVGAAALVVNSIFKGEL 406 >UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Streptomyces RepID=B4V8E4_9ACTO Length = 425 Score = 351 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 97/401 (24%), Positives = 188/401 (46%), Gaps = 8/401 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQL-GPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 I++ N R + GPVSR +++ L+ A++ +V E+LEA ++ Sbjct: 7 TQPMAKRTAQDIRRRNRFDALRCVFAAPGPVSRQEIAAATGLSFATVANLVAELLEAGVL 66 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 +E +++ GRP L V E + + ++ + + L DL+ ++ L D Sbjct: 67 REAGHEDSKG-GRPRARLAVNAERGALVGIDVAETSVQVELFDLALTVLRGVRLPLPQTD 125 Query: 121 --DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 ++D I++ ++ + R+ +++PG+++ E G+ P++ +++PL Sbjct: 126 VRPQDVVDAIVAGVEG-LSDSAVEAPRILGAGVSVPGLVEREGGVSVFSPYWS-WRDVPL 183 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 L + +P+Y+ + + A T+AE FGA R D++ + + VGAG+ DG L Sbjct: 184 RSLLAERLPMPLYLDNPLKAGTVAEMWFGAGREVDDLVVLTLRAGVGAGIAVDGALYRGA 243 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 ++S E GHT + G+ C CG GC+E S I + + +S + + + V Sbjct: 244 TNSAGEWGHTCLVRGGRACRCGRQGCVEAYVSSRGIADTVRELDAESPL-LDPDEDVVVT 302 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLS-KAADILFPVISD 357 + +AA GD +A + + ++G A ++NLFNPQ +++G ++ + + L D Sbjct: 303 KVARAAAEGDAVAAEAVARTARYLGEAAADLLNLFNPQTLVLGGWVAERLGEPLLRQTRD 362 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGS 398 I ALPA Q ++ + + + GAA + Sbjct: 363 VIAAHALPATLQALTFQRSTVPDNPVTLGAATFALEGFLDD 403 >UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=1 Tax=Streptomyces avermitilis RepID=Q82LB9_STRAW Length = 424 Score = 350 bits (900), Expect = 4e-95, Method: Composition-based stats. Identities = 90/390 (23%), Positives = 175/390 (44%), Gaps = 5/390 (1%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 I+ N V R I P SR +L+ L+ A++ +V E+L+ ++ E+ + Sbjct: 12 KRTSRDIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLGMLTEVGFE 71 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--DLPL 124 ++ GRP + V + + + I+ + + L DL + +++ + + Sbjct: 72 DSAG-GRPRGLVAVNSGGGALIGVDIAETYVRVELFDLGLGQLARADEDMRPGESRPEQV 130 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + + + + + R+ + +++PG +D + GI P + D ++PL L + Sbjct: 131 VGHVAAAVGSVVAQAGVDGARVLGVGVSVPGQVDRDRGIAEYAPNW-DWHDVPLLSLLAE 189 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 H P+Y+ + + A +AE FGA+RG D + V + VGAG+ G L S+S E Sbjct: 190 HITHPLYLDNPLRACAVAELWFGAARGRGDAVVVNLGTGVGAGLALGGALHRGVSNSAGE 249 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 GHT + G+ C+CGNHGC+ET I++ + Q T+D+L + Sbjct: 250 WGHTTLVLDGRLCHCGNHGCVETYVGAPGIMQNLRELSPADPLLHPGDQTATIDALARGV 309 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK-AADILFPVISDSIRQQA 363 D +A ++ ++G +A +VNL NP+ +++ S ++ + L + +++ + A Sbjct: 310 AARDPVALKVVRDTARYLGAGIADLVNLLNPEVVVLSSWVAATLGEPLLDEVREAVARHA 369 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVKDA 393 L + + GAA Sbjct: 370 LRRPFASTEIVLSPIPTDPVCLGAATFALE 399 >UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_RENSM Length = 446 Score = 350 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 169/391 (43%), Gaps = 13/391 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 PG ++Q+N + + GP+++ +LSR L+ A+++ +V+ M + LV Sbjct: 54 PRNPGSQSALRQSNQQRIVETLLNAGPLTQAELSRHTGLSTATVSNLVKIMSDGGLVS-- 111 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DL 122 + GR A + + + + + + R + +A+ L +++ E S +L L + Sbjct: 112 -TAPTTSSGRRATSVRLNSNGAVAVGIDVGRTHVRVAIASLGYRVIAERSIKLPLGHLAV 170 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 + + + + +PG ID+ G V + + + + E L Sbjct: 171 EGVKAAADLLQGLLHDAGLPASAVVGAGVGIPGPIDSRTGTVIQGAILPEWVGINILEML 230 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E VPVY+ + + +A+ +G D++ V I +GAG+I G + Sbjct: 231 EDALKVPVYVDNYANLGALAQVTWGVHSAVEDLVFVKIGSGIGAGLILGGSPYYGNIGVT 290 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 EIGH + G C CGN GCLET+AS ++EL S P+T + + + Sbjct: 291 GEIGHATISEQGLICRCGNRGCLETVASTAIMIELL---------SRGAPAPITTEDIIR 341 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A D +I G VGR +A + NL NP+ I++G L++ ++L I + + Sbjct: 342 LAREKDSATLRVIDDAGQAVGRAIANVANLLNPEVIVVGGSLAELGEVLLEPIRRGLIRH 401 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 A+P + + + N+ G A + Sbjct: 402 AVPVVGETTHLVMSSMGNRAEALGGAALVFQ 432 >UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=C5BZR0_BEUC1 Length = 393 Score = 350 bits (898), Expect = 7e-95, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 172/386 (44%), Gaps = 14/386 (3%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 G +++ N + + Q G +++++L+ L+ A+I+ IV+E+L A +V Sbjct: 4 RAATSGSQSSLREANRSLIVDTVKQFGGLTQVELAGATGLSAATISTIVKELLGAGVV-- 61 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 E++ GR A + + +++ + + L D S +V E+S L + L Sbjct: 62 -EVRPTSRSGRRAQMVTLARRVGLAAGVQVGHRSMRVVLGDFSHTVVAEQSLPLPHEHLL 120 Query: 123 PL-LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 LDR I R ++ L + + LP +D G++ L Sbjct: 121 DTGLDRASLLIADLLERVGSPIDELVGVGLGLPAPVDGATGMISVRGVMRGWDGEHLAHV 180 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 + + PV++ +D + +AE GASR D + V + +GAGV+ +G + + + Sbjct: 181 MSKRLARPVHVDNDANLGALAEHTLGASREHLDSVYVRASYGIGAGVVLNGAVYRGYAGT 240 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH QVDP G C CGN GCL+T+ D++L + LT+ + Sbjct: 241 AGEIGHVQVDPQGAICRCGNRGCLDTVVGADALLASLRASHGN----------LTLRDVI 290 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A GD ++ G +G ++A + NPQ +++G L++ +IL + D++R+ Sbjct: 291 ALATDGDRGCARLVADAGEAIGTVVAGLCAAVNPQVVVVGGELAETGEILLGPLRDAVRR 350 Query: 362 QALPAYSQHISVESTQFSNQGTMAGA 387 L + V + + + + GA Sbjct: 351 GVLRNQIAPLEVVAAELGPRAEVLGA 376 >UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepID=D2PL28_9ACTO Length = 404 Score = 348 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 88/389 (22%), Positives = 169/389 (43%), Gaps = 10/389 (2%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + + ++++N + I + GP+SR +L R L+ AS++ +V E+L+ +V+E Sbjct: 4 RRTTVRDMRRSNRSVILTSIYRHGPLSRYELGRETSLSAASVSNLVGELLDEGVVEEAGS 63 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQE--LALKDDLP 123 E+ GRP V L V + + + + + L DL+ +V Sbjct: 64 VESDG-GRPRVLLRVAPTFGYVVGAEVGETRVRVELFDLAMNVVATVVSPIETPKPAPEL 122 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + ++ +D+ ER+ + + + G+++ V +PLG L Sbjct: 123 AVRSVLQGLDEVIAGAGVAKERVLGLGVAVAGVVEGPADAVVHAQTL-GWDGVPLGAMLA 181 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 T +P+ + + + AE FGA RGA D + ++ VGA ++T G SS Sbjct: 182 AGTEIPIQVDNGANTLGQAEMWFGAGRGATDAVVALVGSGVGAALVTGGTSYRGTRSSAG 241 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E GHT + G++C CG GCLE +++LE + S ++ + + Sbjct: 242 EWGHTTIMYGGRQCRCGALGCLEAYVGAEAVLERYREAGGPSAAT----DDEEAEFVALL 297 Query: 304 ALRG-DLLAKDIITGVGAHVGRILAIMVNLFNPQKIL-IGSPLSKAADILFPVISDSIRQ 361 A G +A ++ ++G A +VNL NP++I+ G + P + +++ + Sbjct: 298 AAVGTSEVAAKVVEDTIGYLGAGFANLVNLVNPERIVLGGWAGLLLGERYLPQLREAVGR 357 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALV 390 AL +++E + + GAA + Sbjct: 358 HALRRPYAQVAIELCELGSDAVARGAATL 386 >UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C6Y2I2_PEDHD Length = 405 Score = 348 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 77/382 (20%), Positives = 168/382 (43%), Gaps = 8/382 (2%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 + + + G + DL R L+ +T V ++ +V++ + GR Sbjct: 23 KKIIISYLAEKGHATIADLCREMNLSIPKVTTSVTMLITEGVVKDFGKVGSTG-GRRPNI 81 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVV-EESQELALKDDLPLLDRIISHIDQFF 136 + ++ +L + + I + L DL ++ + L ++ L + I +F Sbjct: 82 YGLVPDSGFFLGVDVKHQHINIGLIDLQKVIIKITKYIPYQLINNKDALYELCRLIKEFI 141 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 ++ + I L G I+ E G + + E PL LE+ G+ +++D Sbjct: 142 YNTSIPKYKILGLGINLSGRINHETG---YSYNFFNFYEDPLSTILEKELGIKTMVENDS 198 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 A E G + DV+ + +D+ +G G++ + L + S E+GH + Sbjct: 199 RAMAYGEFSAGVVKEEEDVLFLNLDYGIGMGIMLNKKLYYGKSGFAGELGHVPLLNNEII 258 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT---VDSLCQAALRGDLLAKD 313 C CG GCLET AS ++ + + R+ ++ + L V + +AA D+L+ + Sbjct: 259 CQCGKKGCLETEASGQGLIRMFKTRVEAGSTTTIDKNKLGQLQVQDIIRAANNDDVLSIE 318 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 ++ +G +GR +A+++N+FNP+ I++G L++ + + I ++ + +L + + Sbjct: 319 LLAKMGEILGRGIAMLINIFNPELIVLGGLLAETGEYIQLPIKSAVNKYSLSLMNNDTKL 378 Query: 374 ESTQFSNQGTMAGAALVKDAMY 395 + ++ + + G+ L+ Sbjct: 379 KLSKLGEEAGVIGSCLLIRNKL 400 >UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSG4_9ACTO Length = 393 Score = 348 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 102/402 (25%), Positives = 186/402 (46%), Gaps = 22/402 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G + I++ N+ V + G VSR +L++ L+ ++++IV E++ +V+ Sbjct: 1 MQPVRVGSKELIREINSSLVLGELR-GGLVSRTELAKRTGLSLPTVSEIVGELIGTGVVE 59 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E EI + GR V L ++ +A + + ++++ + L DL++ +V + +A D Sbjct: 60 EREIA-SSGGGRRPVLLGLKPDAGYVIGIKLTETRVVAVLTDLNAAIVQRATVAVANDDV 118 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 ++ + + + +F + L G+ID +G+V Y D ++ L Sbjct: 119 DTVVRTVAAVVKRFTAKVGPVYGVGV----GLAGMIDRASGVVRHAT-YSDWHDVDLAAL 173 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE+ TG+PV + +D++ E FGA RG DV V I VG G++ DG L Sbjct: 174 LEKRTGLPVVVDNDVNTLVANEQWFGAGRGVSDVAVVSIGRGVGLGMVLDGRLYRGAGGG 233 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E GHT+V P G C CG GCLE++ +IL +++ Sbjct: 234 AGEFGHTKVAPDGPVCACGARGCLESLIGEPAILTATGTS--------------SIEQAV 279 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A GD A+ + VG +G + +VNL NP+ I++ ++A+D+L P ++RQ Sbjct: 280 DLARGGDDAARAVFDHVGRTLGTAVGNLVNLLNPKLIVLAGEGTRASDLLLPGFDTALRQ 339 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIR 402 + + V + ++ GAA L ++ +L Sbjct: 340 AVFDGLQRDLEVVVDDWDDEAWAQGAAGLFLGELFQPNLRPD 381 >UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUP6_ALKMQ Length = 392 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 177/390 (45%), Gaps = 13/390 (3%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 DQIK+ N + +I Q +++ +++ +L+ +IT + +++E LV+E + + Sbjct: 8 SQDQIKEINRSNIINMIKQKYEITKHEIAVALKLSIPTITTNINQLIEEGLVEEAGVGNS 67 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDR 127 GR + L + A + + +S ++ + L DL++ ++ E S + +LD Sbjct: 68 TG-GRKPMILKLVENARFSVGVDVSPDKVRILLIDLNNTIIDEASFDYVKDLSFKGVLDE 126 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 + + I++F ++ ++ + I+LPG++D + I+ P V++ E + Sbjct: 127 VKTEIERFMTQNNISKNKILGVGISLPGLVDEDRLILENAPNI-GVRDFNFQE-FQDSLQ 184 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 + V+I+++ + AE G + R+V+ V I VG G+I + H+ + + E GH Sbjct: 185 LRVFIENEANIAAYAEKEIGKTVNMRNVVYVSITEGVGTGIIVNQHIYKSSNKKAGEFGH 244 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 ++ + C CG GC E AS ++ + +S T+D + Sbjct: 245 MRISDEPRPCNCGRTGCWELYASKKALSRYYEESTGLKVS--------TLDEIFSEESFN 296 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 K+ I + + ++ NP+ ++IG L K + +I+ ++ Sbjct: 297 MPSVKEAIGRYIDCLFIGIENIILGLNPEFVIIGGELGKYEKEMLTLINGRNNMKSSFVE 356 Query: 368 SQHISVESTQFSNQGTMAGAALV-KDAMYN 396 + V + ++G++ GAAL+ + ++N Sbjct: 357 YEGTKVVFSALKDKGSLIGAALLPLEDLFN 386 >UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYI5_HALOH Length = 322 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 158/313 (50%), Gaps = 8/313 (2%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIISHIDQFFIRHQKKLE 144 +Y+ + + +I AL D K+V ++ + ++ I+S ID E Sbjct: 4 YYVGVDLGGTKILTALADARGKIVAKKKLPTEARKGEEKVIQNIVSSIDAVLQEKGLSRE 63 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 + ++ + PG ++T+ GI++ P + + + + LE+ TG+PV +++D +A + E Sbjct: 64 DVITLGVGSPGPLNTQEGIIYLAPNL-GWRNVHIKDILEEETGIPVILENDANAAALGEK 122 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 FGA + ++I + + +G G+I + + H + E+GH ++P G C CGN GC Sbjct: 123 WFGAGQDVDNLIYITVSTGIGGGIIINKKIFHGINDGAGEVGHMVIEPGGPVCGCGNRGC 182 Query: 265 LETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLLAKDIITGV 318 E +AS +I ++ + + ++ +++L + + + +AA +GD +A+ I Sbjct: 183 FEAVASGTAINKMGREAVKENKATLLMELSGGDPEKIDGSLIARAARQGDEVARKIWDKA 242 Query: 319 GAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQF 378 G ++G LA ++N+FNP+ I++G + A D++ + S++ AL + + + + Sbjct: 243 GYYLGIGLANLLNIFNPEMIILGGGVMNAGDLIMEPMKKSLKDHALESAFNSVEIRQAEL 302 Query: 379 SNQGTMAGAALVK 391 N + GA V Sbjct: 303 GNDTGVIGAVAVA 315 >UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX6_9ACTO Length = 396 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 179/394 (45%), Gaps = 14/394 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 PG +++ N V ++ Q GP+++++++ + L+ A+++ +V+E+ +A LV Sbjct: 3 ATRPAPGSQASLREANRERVLGVVRQHGPLTQVEIAAASGLSAATVSNMVKELDQAGLV- 61 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD- 120 + + GR AV + + + + ++ +A+ S +++ E+ L Sbjct: 62 --GLSPSIRNGRRAVLVSLASGGGLLAGVAFGERDVRVAIASESREILAEQLMPLQADHV 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 ++R + +++E + +I LP +D+ +G + + + E Sbjct: 120 ADDGMERAARLLADLTESVGQRVEDIGAIGFGLPTPVDSVSGEAGSDAVLPGWRGVHVAE 179 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 A+ + PV + + + + E GA R + + + VGAG++ G + + Sbjct: 180 AMSGYLRAPVVLDNTANLAALGELRAGALRDVQHGCYIKFSYGVGAGIVLGGEVFRGSAG 239 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGH +D G C CGN GCL+T ++L PL + + Sbjct: 240 TAGEIGHLTIDENGPICRCGNRGCLDTFVGSRALLNSLAASHG----------PLRLRDV 289 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 AL GDL + +I G VG +A +VNLFNP+ I++G L++A +++ + +++ Sbjct: 290 ITRALAGDLGCRRVIEDAGRRVGVAVAGLVNLFNPEVIVVGGKLAEAGELVMLPLREALD 349 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAM 394 + A+P+ + + + + + + GA + + Sbjct: 350 RCAIPSAAATVELRPAELGDTADVLGAIELASVL 383 >UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 Length = 320 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 92/316 (29%), Positives = 155/316 (49%), Gaps = 9/316 (2%) Query: 85 WHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLPLLDRIISHIDQFFIRHQKKL 143 + + + +I + L D K++ + Q K ++++I S ID + K+ Sbjct: 2 RKAVGVDLGGTKINVLLVDDQGKVLGRDKQPTESEKGKDHVINKIKSMIDNVLNQAGLKI 61 Query: 144 ERLTSIAITLPGIIDTENGIVHRMPFYED-VK-EMPLGEALEQHTGVPVYIQHDISAWTM 201 + I I PG++D + P D K E+ LG+ LE+ VPVY+++D++ Sbjct: 62 TEIEGIGIGFPGLMDRDKKTTLYAPNLGDEWKKEVLLGKELEETFNVPVYLENDVNLIAW 121 Query: 202 AEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGN 261 AE L GA RG + +I V + +G+G++ +G L E GHT V P G C CGN Sbjct: 122 AEWLVGAGRGTKTMICVALGTGIGSGIVLNGKLWIGAHGMAGEFGHTTVLPDGPVCGCGN 181 Query: 262 HGCLETIASVDSILELAQLRLNQSMSSMLHG------QPLTVDSLCQAALRGDLLAKDII 315 GC+E IAS I + A+ L Q +S++ +TV + QAA RGD LA DI Sbjct: 182 RGCIEAIASGTGIEKYAKSILPQYPNSLIWELCNGNLDEVTVKIIYQAAERGDKLAVDIF 241 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 G ++G LA V++ +P+KI+IG ++ + + + + ++ LP++ ++ Sbjct: 242 NYAGYYLGIALANYVHIIDPEKIVIGGGVANVREYIGKPMKEEFYKRVLPSFRDKVTFSW 301 Query: 376 TQFSNQGTMAGAALVK 391 + GAAL+ Sbjct: 302 AELGEDAGGIGAALLV 317 >UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASC3_STRRD Length = 397 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 98/397 (24%), Positives = 166/397 (41%), Gaps = 18/397 (4%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + + +++ N + R + GP SR +LS L L+ AS++ + +++ ++ Sbjct: 1 MVRPERRTVRDLRRGNRAVLLRTLYFEGPTSRHELSGLTGLSAASVSNVTGDLIADGIIV 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL--K 119 E + E+ GRP V L V+ E + + + + + + L DL + L Sbjct: 61 EAGLVESDG-GRPRVLLRVDPEFGYAIGVDVGETHVRVELFDLDMNERAKADYPLRPGRH 119 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 D ++ I+S ID R+ + I +PGI+++ + + +PLG Sbjct: 120 DVDLVVRHILSGIDAVLAAGGVDPARVLGVGIGVPGIVESGPEALIHAQTF-GWDAVPLG 178 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L T +P+Y+ + AE FGA RG R I +I GA +ITDG + Sbjct: 179 TLLRAGTSLPLYVDNGAKTMGQAELWFGAGRGTRHTIVALIGSGAGASIITDGIAYRGAN 238 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 SS E GHT++ G+ C CG GCLE +SIL+ A L + + Sbjct: 239 SSAGEWGHTKIMMGGRACRCGGRGCLEAYIGAESILDRAGLSAEIADEQAV--------- 289 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAADILFPVISDS 358 L + G +I ++G LA ++NLFNP++I+IG I S Sbjct: 290 LAELVRSGGP----VIDETADYLGAGLANLINLFNPERIVIGGWAGLLLGRHHLTRIRRS 345 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 +L S+ + GAA + + Sbjct: 346 AADNSLTQPYGTASIVLGRLGPDAVALGAATLVVEEF 382 >UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YJZ1_NOCDA Length = 396 Score = 347 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 177/386 (45%), Gaps = 8/386 (2%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 A PG +++ N V ++ + G ++ +L+R L+ AS++ IVR + A V Sbjct: 4 AAATPGSQSALRRANERRVVDVLRREGTRTQAELARATGLSAASVSNIVRGLRAAGTVL- 62 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDD 121 +++ + GR A + + + +++ + + +A+ D ++ E D Sbjct: 63 --VRDTSSNGRRAKAITLVRQPGAVVAVDFTADSVRVAVGDSDGNMLAREEIGYDVASDA 120 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + R + +R + ++S+ ++PG ID G V + Sbjct: 121 ERGVRRAAWLAETILLRSRVDRGTVSSVVASIPGPIDPGTGEVGGISCLPRWAGFRPARE 180 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L + G+ V ++D + +AE GA GA V+ +V++ VGAG++ G L + Sbjct: 181 LTERLGLEVLAENDANLAVLAEQHRGAGVGAEHVVHLVLNDGVGAGIMMSGQLFRGAGGT 240 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH +DP G C CGN GCLET +L++ L Q+ P+ + + Sbjct: 241 AGEIGHIALDPRGHVCRCGNRGCLETFVGASYLLDM----LPQNTDVARGPDPVRIPDMV 296 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 AAL GD ++ II G +G+ AI+ NLFNP ++++G L++A D+L + S+ Sbjct: 297 AAALEGDPGSRRIIAEAGTALGQGTAIVANLFNPDRVVVGGELAQAGDLLLDPMRRSMEL 356 Query: 362 QALPAYSQHISVESTQFSNQGTMAGA 387 +L + + + + ++ GA Sbjct: 357 GSLSSALDRLELVPSALGRDASLYGA 382 >UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCD4_BACSK Length = 403 Score = 347 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 91/389 (23%), Positives = 181/389 (46%), Gaps = 12/389 (3%) Query: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 Q+ + N LI GP+S+ +++ Q++P + I+ ++++ VQE + + Sbjct: 2 QLHEVNRINALNLIRLRGPLSKNMIAKQIQVSPTTAATILNKLIDEGYVQEEGVGHSTG- 60 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR V + ++L ++ + +A +L + E+ ++ +D ++ Sbjct: 61 GRKPVLYRFNPDKSFIIALSLANSSVRIAALNLEGHVRSEQYGQVDSLRGEAYIDFVMKT 120 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 + +F R + KL+ I+I +PGI+ E GIV D+ ++ L + +E G+ Y Sbjct: 121 LSEFIGRFE-KLDECLGISIVVPGIVQAERGIVSYNAKL-DLYDVHLKQKVEAAFGLRTY 178 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 + +D++A MAE FG +R ++++ + + VG+G+ +G + S S EIGH V Sbjct: 179 VDNDMNAMMMAEKQFGTAR-YKEMLFISVGEGVGSGLSVNGSIYRGFSGSAGEIGHMSVL 237 Query: 252 PYGKRCYCGNHGCLETIASVDSIL-ELAQLRLNQSMSSML------HGQPLTVDSLCQAA 304 P G C CGN GCLE + +I + L Q + + + + + +AA Sbjct: 238 PGGPACPCGNQGCLENYVNWPAIYSRILSAWLTQGVKTAIIESAAGRPEAIKPTDFVEAA 297 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 GD A ++ + + + ++L NPQ +++ P + LF +++ I +AL Sbjct: 298 CAGDPFALTVVEEMAESLAVAITNSLHLLNPQAVVLTGPHVQNNLPLFKRLNEKINSRAL 357 Query: 365 PAYSQHISVESTQFSNQGTMAGA-ALVKD 392 ++H V+ + GA A++ Sbjct: 358 NPIARHTEVKPASLETNKDILGALAVLLQ 386 >UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDS7_9FIRM Length = 326 Score = 347 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 81/313 (25%), Positives = 153/313 (48%), Gaps = 6/313 (1%) Query: 87 YLSLRISRGEIFLALRDLSSKLVVEESQELALKDD-LPLLDRIISHIDQFFIRHQKKLER 145 Y ++ + +I+ L D ++ E ++ ++D+++S +DQ + K E+ Sbjct: 6 YAAIDLGGTKIYSVLADSKGDILAHTRLETRAREGSETVMDQMVSSVDQLLEKSGGKKEQ 65 Query: 146 LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEAL 205 L I + + G D E ++ P ++ + L+ G+PV ++D +A + E+ Sbjct: 66 LAKIGVCIAGFYDWEKRLLIHSPNMAGWSDVDVESRLQDKLGIPVIAENDANAAALGESR 125 Query: 206 FGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCL 265 GA +G+ D++ + + +GAG+ITDG + E GH V P G C CG GCL Sbjct: 126 RGAGQGSGDMVFITVSTGIGAGLITDGKIYRGSRGFAGEAGHMVVKPDGPLCGCGRRGCL 185 Query: 266 ETIASVDSILELAQLRLNQSMSSMLHG-----QPLTVDSLCQAALRGDLLAKDIITGVGA 320 ET+AS +I +A ++ ++L +T + AA + D LA++++ G Sbjct: 186 ETVASGTAIARIANEQMQNGRKTILSEITAQNSKVTAPDVFAAAKKKDPLAQEVLQGAIH 245 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSN 380 ++G L +VNL NPQ I+IG +++A D LF + I + A+P + +++ + Sbjct: 246 YLGIGLVNLVNLLNPQVIVIGGGVAEAGDDLFVPLRQIIAEHAVPPAAASVTLRKAELGV 305 Query: 381 QGTMAGAALVKDA 393 + +AG + Sbjct: 306 EAGVAGMLCLLTE 318 >UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KTE3_CLOPH Length = 381 Score = 347 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 163/390 (41%), Gaps = 24/390 (6%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 G + I+ N+ V I Q P+SR +S+ L A+I+ IV + + LV E+ ++ Sbjct: 4 GSKELIRDINSKLVLETIIQNEPISRAAISKKLGLTKATISAIVSDFINDKLVVEIGSED 63 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 GR + L +A + + + I I + DL + + + + + L+ Sbjct: 64 -TGLGRKPILLSFHKKAGYAICVDIEVSRISCMISDLKGEQRSVKQIKTPSESN--LVPV 120 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 +I I ++K L IAI + G++ V P+Y ++ + L E L + G Sbjct: 121 LIDLIQSMESEYEKTPYGLIGIAIGIHGVVHQNE--VLFTPYY-NLNGINLSEQLGSYFG 177 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 VPV+++++ + + E + + + I VG G+I + L + E GH Sbjct: 178 VPVFLENEANLSALGEKAY-LPETYTSLANLSIHSGVGLGIILNKQLYTGYHGNAGEFGH 236 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 T V G+ C CGN GCLE AS ++L+ ++D L A + Sbjct: 237 TIVVMNGRTCPCGNQGCLEQYASERALLKEYSE-------------DASLDDLLLAYEKK 283 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + A ++ ++ + + N +P+ I+I S + A L +I+ + + + Sbjct: 284 EPKAMGVMEHFVNYMAVCVNNLQNTISPEIIIINSAFTNAYPELAEMIAKKVNNKLV--- 340 Query: 368 SQHISVESTQFSNQGTMAGAALVKDAMYNG 397 I + ++ + + G V + G Sbjct: 341 -DKIPLIASNLKDHSILLGGITVLVKNFLG 369 >UniRef50_C1D0G6 Putative transcriptional regulator, NagC family n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0G6_DEIDV Length = 440 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 98/406 (24%), Positives = 185/406 (45%), Gaps = 5/406 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + P + I+ + + +L+ + +R+D++R ++ ++I+ IV E++ LVQ Sbjct: 3 APASAPLDLAAIRARHTALLLQLLWERD-RARVDIARDLGMSRSAISSIVSELIGVGLVQ 61 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KD 120 E + +G GR A L + A L++ + + + L DL + + + + Sbjct: 62 EGNTRGSGRAGRRATLLSLNARAAALLAIDLGASHVRMDLMDLRCRTLASRTVPHEVISG 121 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 ++ D + + + + +PG +D + G V R P P+ E Sbjct: 122 PAETYHLLLRLADAVQREAHVPADHVALVGLGVPGPVDQDTGRVIRPPNMPGWDGEPVRE 181 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 AL++H G+ V + +D + AEA FG RG D+I V +GAGV+ G L Sbjct: 182 ALQRHLGLEVLVDNDANLGAQAEARFGPHRGVSDLIYVKAATGIGAGVLLGGRLHRGVRG 241 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 EIGH ++ G GN G LE+ A+ ++ A+ R ++L P+T+ +L Sbjct: 242 GAGEIGHISINEQGPVGRSGNPGSLESYAAAQVLVATAEARRAAGAPTLLT-DPVTLPAL 300 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 + A D LA+++ VG H+G ++ +NLFNP ++IG L++A + + S Sbjct: 301 VRHAET-DPLARELWEDVGHHLGVAISTALNLFNPAVVVIGGRLAEAGPVFLNAVRSSAL 359 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLLIRLLQ 405 + + ++ ++ + + GA A++ D + S L L Sbjct: 360 SRTMQINAERTRIDLSTLGGDAGVLGAGAMMLDQLLTSSGLPHLYA 405 >UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID=D2PPF8_9ACTO Length = 414 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 100/407 (24%), Positives = 168/407 (41%), Gaps = 14/407 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 ++ TN AV + P SR ++ L A++T IV E++ L +E Sbjct: 16 TPHTADHTDVRATNLAAVLGFLRANAPCSRAAIASGTGLNKATVTSIVGELIAQRLARET 75 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSK--LVVEESQELALKDD 121 E + + GRPA LV++ A+ + + + + D + L S Sbjct: 76 EQTQ-NHVGRPATLLVLDGSAYAAIGMEVGVRGLTAIAYDSAGGQLLRWHRSGPGPEASP 134 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + + + + + + + PG+ID + +V +++PL Sbjct: 135 AKTIAALAALARRAISAVHSSGRDVLGLTVGAPGLIDHDGSVVLAAG--LGWRDVPLRSD 192 Query: 182 LEQHTG---VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 L G PV + +D + +AE +G G D+IQ+ + VGAGVI DG L Sbjct: 193 LIAALGRPAFPVMVDNDANLGALAEHRYGDHAGTADLIQLSGETGVGAGVICDGRPLRGH 252 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + EIGH ++ P G C CG GCLE +A + +IL + L + Sbjct: 253 HGYVGEIGHLRIQPDGPVCGCGRRGCLEAVAGMPAILARLEPADAPETDPQLRT-----E 307 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 L + A GD + VG +GR ++++V+L +P+ +++G + L P I Sbjct: 308 QLVRRAEEGDTATLKALAEVGGLLGRGISVLVDLLDPELVVLGGSYAGLGRWLVPAIEQE 367 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLLIRLL 404 + AL S V + F + T GA A D + +G L I L Sbjct: 368 LADGALVTVSGRCRVVVSTFGHDATSIGAVARSLDRLDSGRLPIPTL 414 >UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium RepID=A5N8K8_CLOK5 Length = 317 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 149/309 (48%), Gaps = 3/309 (0%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIISHIDQFFIRHQKKLE 144 + + + + +I AL D ++ + + ++ +LD II I++ + Sbjct: 5 YVIGVDLGGTKIAAALVDFKGTIICKYTLPTKAEEGEKYILDNIIKIIEKVVNFGGVCSK 64 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 ++ I + PG +D + G + P K + L+ H +P+++ +D +A +AE Sbjct: 65 KIKCIGLGAPGPLDIDKGKIICTPNLP-FKNFNIVSPLKNHFKMPIFLDNDGNAAAIAEH 123 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 +FGA +G +++ + + +G G I +G + + + +EIGH +D G C CGN GC Sbjct: 124 MFGAGKGINNMVFITVSTGIGGGAILNGQIYRGNTKNALEIGHMTLDAQGPLCNCGNFGC 183 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHG-QPLTVDSLCQAALRGDLLAKDIITGVGAHVG 323 E +AS +I A+ + ++ L + +T + + A GD ++++I+ ++G Sbjct: 184 AEVMASGTAIAREAKKAVKMGYNTTLALYKNITSKEVFKEAQLGDSISQNILDTTLNYLG 243 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 +A ++ +P+ ++IG +SK I+F I++ ++++ S++ + Sbjct: 244 ICVANIITCLDPEAVIIGGGVSKGGKIIFDKINEVVKRRCFGTVSKNTRILPALLGTDAG 303 Query: 384 MAGAALVKD 392 + GAA + Sbjct: 304 VIGAAALAF 312 >UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUR2_ACICJ Length = 398 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 174/400 (43%), Gaps = 12/400 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + +++ N+ ++ +I Q +S+ LS+++ + PA+I+ I+ + +V+ Sbjct: 2 TRARVNSALVRRINSARLFHMIRQNPGISQQKLSQISGIDPATISIIINNLESGGIVRRD 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 G GRP L ++ A + + + I + + + + + Sbjct: 62 TDAPTGRAGRPTTALSLDPRAGYLAGISVEPDAIRIVISTIDGTACADLAVP-GSTAPEA 120 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + S + + L + + +P ++ + G + P +++ + E L Sbjct: 121 AIAAARSGVTAALRSLRATRATLLAAGVAMPALV-STGGRIVFAPNI-GWRDLDVAENLA 178 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 Q VPV +++D+ A +AE LFGASR D + V+ +G G+ G L Sbjct: 179 QKLKVPVRVENDVKAAALAEHLFGASRDIADFVYVMGRSGIGGGLYLMGELYRGPHGLAG 238 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 EIGH ++ P G+ C CG GC E S +IL R + + V S+ +A Sbjct: 239 EIGHMKIVPGGRACGCGGQGCFEAYVSEKAILSDLAARGHGAR---------DVASVRKA 289 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 GD +A+ ++ G H+G LA ++N+ +P++I++G L++ A L P +++ A Sbjct: 290 CEAGDPVARAVLAEAGRHLGLALANLINIISPRRIVLGGSLAQLAPFLLPAAMETLEANA 349 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRL 403 L A + + + ++ S G + + +RL Sbjct: 350 LAAIYRDVEIVVSEMSGSAAAMGGIALALQQFLDDPPVRL 389 >UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyces RepID=B5I1X5_9ACTO Length = 408 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 92/398 (23%), Positives = 168/398 (42%), Gaps = 20/398 (5%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 P +++ N V + GP+SR ++ L A+++ +V E++ + L++EL + Sbjct: 24 PDTQQGMRRRNLARVMHTVSAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEELGPE 83 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQ--ELALKDDLPL 124 G GRP L V + + + + DL ++ + + P+ Sbjct: 84 RPGRVGRPGSALAVSGRGPAGIGAEVGVDHLAVCAVDLRGQVRSRAVRYGANRGRSPEPV 143 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + + S + Q + + +A+ +PG++ + V R P D + LG L Q Sbjct: 144 IAELASLVSQVVAEGEGEGLWPAGLAVAVPGLVARDVRTVVRAPNL-DWHDTDLGALLPQ 202 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +P+ + ++ + +AE G D + V + +GA ++ DG LL E Sbjct: 203 --DLPLTVGNEANFGALAELWLGDGTPH-DFLHVSAEIGIGAALVVDGQLLRGTRGFAGE 259 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 +GH V P G RC CG GCLE A +++L A L + + L Q A Sbjct: 260 LGHVPVHPDGPRCPCGGRGCLEQYAGEEAVLRAAGLEPGEDRVGL----------LAQHA 309 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 GD + + G +G L VNL +P+ +++G L+ A L P + D + ++ Sbjct: 310 ADGDEAVRGALREAGQALGIALTGAVNLLDPEAVVLGGALAGLAPWLLPSLRDELARRT- 368 Query: 365 PAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLI 401 V + +QG + GAA V A+ + ++ Sbjct: 369 --AGPACPVSVSGLGSQGPLLGAAHSVVRAVLDDPAVV 404 >UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GID9_9FUSO Length = 398 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 75/394 (19%), Positives = 178/394 (45%), Gaps = 9/394 (2%) Query: 13 IKQTNAG--AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 I++ N + + + VSR DL++ +L A+I+K +++++ +++ E E+ Sbjct: 9 IRKLNRTDYRILEKVMKDSEVSRTDLAKEMELTSAAISKAIKKLMLQNIIMEHATLESTG 68 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GRP L+V E + + + G I + L+ +++ ++ K +LD + Sbjct: 69 -GRPRKSLIVNKEYKKIIGVNLGAGFINIVASHLNGEIIQIRQRKFVYKTQEKVLDLLYE 127 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 I + + E + I + G++D + G V P ++ K++ + LE+ + V Sbjct: 128 GISDMVEKFGE--ESIIGIGLATHGLVDRKKGTVIFSPHFK-WKKLDIRRELERKFNLKV 184 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 +++D+ A AE ++G + ++ + + I + VGA + +G + + S E+GH V Sbjct: 185 IVENDVRAMLTAEHMYGCAGNMKNFMLLYIRNGVGAAIFLNGKIFEGSNYSAGEVGHFIV 244 Query: 251 DP-YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 + +C CG GCLET S +++ L + + +T+D + + + Sbjct: 245 NEKSTIQCRCGKFGCLETECSEQALINKVVWELEK-KDKNESKEKITIDKIYSRSKHKEE 303 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 I+ G+++ ++N+ + +++ + + + + L +++ Sbjct: 304 PYYSIVKEAAYETGKVIGNILNILDIDNVVVAGDIIMTEKLYMNNFRKGVDRMILEDFNK 363 Query: 370 HISVESTQFSNQGTMAGA-ALVKDAMYNGSLLIR 402 + + S+ + + GA +LV ++ G L++ Sbjct: 364 KVKIVSSALDDMIGIYGAISLVTSNLFVGEKLMK 397 >UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterales RepID=C6P958_CLOTS Length = 382 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 70/390 (17%), Positives = 161/390 (41%), Gaps = 22/390 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + + G IK N V +I ++ P+SRI +S++ ++ ++++ IV E+++ LV Sbjct: 1 MTQYRKGTNYLIKNINTANVLDVIKKMQPISRIKISKVLNMSKSTVSGIVDELIKEGLVS 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E + + GR + L A + + I L +L K++ + + +KD Sbjct: 61 EEGYGKTTSAGRKPIELTFNPNAKFSIGIDIESTNTIGVLTNLEGKIIKKIKRPTGVKD- 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 D + I + + +T I + PGI + E G V P + L Sbjct: 120 -EAFDNAVDIIRELLD----CQKEITGIGVGAPGITNIEKGTV-YAPGLS-WVDFNLLPK 172 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L++ ++I + ++ + E G+ + + + V I + +G+G+ +G L+ S Sbjct: 173 LKEVFDYDIFIDNSVNYAALGERWIGSCKDVNNFVLVTIGNGIGSGIYINGKLVRGHKYS 232 Query: 242 LVEIGHTQVDPY--GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 E+G+ + K+ + ++G E+ AS+ ++ S+ ++ +G+ T++ Sbjct: 233 AGEVGYMAIGRDILNKKYFYEDYGYFESKASLLGLV--------SSLKNLSNGKFNTMED 284 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L D + ++ ++++ NP+ I+I + + + I Sbjct: 285 FINGYLAKDEICIRAFNEFIENLSMGFTNIISILNPELIVIAGDVINLGINIVENLKRLI 344 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAAL 389 + + + T+ + GA+ Sbjct: 345 DKMIPF----DVKIIYTKLNEDAAAIGASA 370 >UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CNA8_VARPS Length = 389 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 78/368 (21%), Positives = 162/368 (44%), Gaps = 8/368 (2%) Query: 32 SRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLR 91 SR ++ + + ++ ++E L+ E ++ + GR A L + + + Sbjct: 14 SRHAMAEQLGFSKSKANALIAGLVEQGLLAEAGLQRSSG-GRRAENLQLHAGLGVLVGID 72 Query: 92 ISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFFIRHQKKLERLTSIA 150 I + +A+ ++ + + ++ +L R+ + + R + + I Sbjct: 73 IGATSLDVAVLRPDLSVLAQHDEPADVREGPAVVLARVRVLMRELLARCGHGPKNVLGIG 132 Query: 151 ITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASR 210 I +PG ++ E G + P + + L + PV++ +D++ + E R Sbjct: 133 IGVPGPVNFEIGQLVNPPLMPAWDSFSIRDYLREDYAAPVFVDNDVNLMALGELWR-LKR 191 Query: 211 GARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIAS 270 + + + I +G G++ G + + S ++GH VD G RC+CGN GC+E +A+ Sbjct: 192 SLNNFLVIKIGTGIGCGIVCHGEVYRGAAGSAGDVGHICVDQDGPRCHCGNVGCVEAMAA 251 Query: 271 VDSILELAQLRLNQSMSSMLHG-----QPLTVDSLCQAALRGDLLAKDIITGVGAHVGRI 325 +I +A S+ML + + QA+ GD A II G +G++ Sbjct: 252 GPAITRMAVQAAEAGESAMLAECLRVHGRIDAIDVGQASRAGDTAANGIIQRAGNLIGQM 311 Query: 326 LAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMA 385 LA +VN FNP + IG +++ + + S+ Q++L ++H+ ++ T QG + Sbjct: 312 LASVVNFFNPSHVFIGGGITRIGPLFLAAVRQSVYQRSLALSTRHLEIQYTPLGVQGGLV 371 Query: 386 GAALVKDA 393 GA ++ Sbjct: 372 GAGVLAMH 379 >UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepID=Q1GMG9_SILST Length = 435 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 92/407 (22%), Positives = 172/407 (42%), Gaps = 12/407 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 + + + +++ + +I ++RID+++ ++PA++T I E+L A L+ Sbjct: 32 LARSGRLTPSSEQRESGRQQILDVIRAQESIARIDIAQATGMSPATVTAITAELLAAGLI 91 Query: 61 QEL--EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL 118 +E+ E+ RGRP V L + A L++S I + D + + L Sbjct: 92 EEIAPELAPGARRGRPRVALRLRGAARLIAGLKVSHHVISTVITDFVGQELASHEMPLVQ 151 Query: 119 KD--DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEM 176 L +I +D + +E L+ + + + G++D + G ++ E+ + + Sbjct: 152 GTMPVPELCAQIRRALDLTCEKGGFSIEDLSGVGLGMAGMMDADRGFIYWSSSLEE-RNV 210 Query: 177 PLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLH 236 A+ PV++ +D + AE LFG R + I + I+H VG G++ D + Sbjct: 211 AFTAAISAELPCPVFLDNDANLVAKAEHLFGEGRTCDNFIVITIEHGVGMGIVIDQQIYR 270 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT 296 E+GHT+V G C CG GCLE ++L A + + T Sbjct: 271 GTRGCGAELGHTKVHLEGALCQCGQRGCLEAYVGDYALLREANISSGSERHT-------T 323 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + SL Q+A GD++AK I+ LA +VN+F+P KI++ + + Sbjct: 324 IASLFQSAENGDVVAKSILDRARRMFAMGLANVVNIFDPSKIILAGARLSFDYLYSDKLI 383 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRL 403 + +RQ + + V + + GAA + L Sbjct: 384 EEMRQWVVQVDAPLPEVMVHDWGDLMWAKGAAAYALEEVTARTVREL 430 >UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJD3_BREBN Length = 392 Score = 344 bits (884), Expect = 4e-93, Method: Composition-based stats. Identities = 85/405 (20%), Positives = 173/405 (42%), Gaps = 17/405 (4%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + G+ +K+ N V + + G +SR D+S+ QL+ ++ +V EM++ L+ Sbjct: 1 MQVPKKTGNSKLVKKLNKEEVLQQVVLHGQISRADISKQTQLSRPCVSALVDEMIQEGLL 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LK 119 QE+ + ++ GR + L +A+ + +A+ D+ + + + LA Sbjct: 61 QEVGMGDSKG-GRKPILLEYNYQAYAIAGAIFEGSTLDMAIADMKGEFLARYRKRLAQPA 119 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 + +++ + + +D+ ERL + + L G+ +G V P P+ Sbjct: 120 NGETVIEDLAAGLDRLLRESGIPRERLLGMGVGLQGVTQRGSGTVSFSPS-TGWMGSPIQ 178 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 + +E G+PV I +D++ T+ E + GA G +V+ + + +GAG+I DG Sbjct: 179 QTIEARLGLPVIIDNDVNMMTLGEYVRGAGVGHTNVVYMYVGTGIGAGIILDGQFYRGSR 238 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 + EIG + P R G G ET S+ I E A+ S L ++ Sbjct: 239 EAAGEIGFMMIGPVHNR-PNGASGVFETHYSIPGIQEQAK-----GFLSDLQEGSSVIEE 292 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L + A + A+ ++ V H +A ++++ NP+ +++ + I + + Sbjct: 293 LIRHAKH-NPEAEKLLADVYRHWAYGMANIISILNPEILILSGEMVHVDGEGVKQIHEWL 351 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLL 404 R+ + ++E + + GA ++ RLL Sbjct: 352 REWV----PEVPNLEKASLGERAGLIGA---VHSVLEAFPFTRLL 389 >UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea blandensis MED297 RepID=A4BDK2_9GAMM Length = 402 Score = 343 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 121/405 (29%), Positives = 212/405 (52%), Gaps = 7/405 (1%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M N ++D +KQ N ++R+I + G +SR L ++ LA S+TK+ R ++E +LV Sbjct: 1 MTNTNPVANLDSVKQYNLMRLFRIIVEYGLISRTQLVEVSDLAAGSVTKLTRLLIEQNLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E+ +++ RGR AV L +T+ L+ R R +++ L DLS L+ E++ L + Sbjct: 61 HEVAQQQSE-RGRKAVLLAPKTDDIQILAARADRQHLYVGLCDLSGNLLQREAEPLNADN 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 + + ++ + F H ++ + I +T+PG++D GIV+ MP V E+PL + Sbjct: 120 EDEFVAQLTRSLRHFLTTHADQVRNVVGIGVTMPGLVDANRGIVNFMPHVP-VHELPLAD 178 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 + +P YI SA +AE GAS AR+ + + + + VGAG+I + L Sbjct: 179 IITDALEMPCYINSFASAMALAEKQIGASFHARNSVFIEVHNGVGAGIILNNELYSGT-- 236 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGH Q+D GK C CGN+GCLET S +I+E R Q++ S+ + T+ + Sbjct: 237 GVGEIGHIQIDRLGKPCICGNYGCLETEVSDSAIVEHFNQR--QALQSVDTERAETIQDV 294 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 QAA + A ++ AH+G +A + NLF P I++ +++A ++ PV+ ++ Sbjct: 295 LQAAGELNENALAVLKEAAAHIGTAMATVANLFRPDSIILAGAVTQAWSLIHPVLEQQLK 354 Query: 361 QQALP-AYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLL 404 ++L + I + + + +G ALV+ + G + L Sbjct: 355 TKSLQVRGLKPIELLRSDIYDSPWYSGYALVRQGLLEGDIFHTLF 399 >UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A9_SOLUE Length = 387 Score = 343 bits (880), Expect = 9e-93, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 170/396 (42%), Gaps = 15/396 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 Q + ++ N V L+ P+SR DL+R + L ++I+ IV +++E + V Sbjct: 5 AKRPQGASSEVVRDINRRIVLNLVRTRQPISRADLARASGLQRSTISLIVEQLIEENWVL 64 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E RGR L + + + + I + +AL D + K +E D Sbjct: 65 EGPTGRLP-RGRRPTFLRLNDD-RVIIGVDIRPIQTTVALADANGKFTSQEVMSTPG-DP 121 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L ++I+ I + + K+ + I I+LPG D + + P + ++ + + Sbjct: 122 KLALTQLIAAIKRIKSTCRGKM--IEGIGISLPGRFDHSSNRLVFAPNLK-WTDIDIRDP 178 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 + + TG+ V +++ +A +AE F R+++ V + +G GV+ +G L+ S Sbjct: 179 IVEQTGLDVELENAANACVLAEVWFDRVHECRNLVVVTVSEGIGTGVLANGALVRGLSGM 238 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E GH +DP G C CG+ GC E AS + L + L+ L Sbjct: 239 AGEFGHVPLDPTGPTCGCGSRGCWEIFASNRAALRYYLETGSTETG-------LSFTDLL 291 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A +GD A+ + + ++GR + ++V P++I++ L+++ VI I+ Sbjct: 292 SRADQGDSRAEKALDMMAHYLGRGMRMIVAGLAPERIVVVGDLTRSWQRFGSVIEAEIQA 351 Query: 362 QALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYN 396 Q LP + + G ALV ++ Sbjct: 352 QVLPGGVVP-KLVPAFEDGMARLRGTVALVLQKHFS 386 >UniRef50_C9YT50 Putative ROK family transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YT50_STRSW Length = 429 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 184/396 (46%), Gaps = 7/396 (1%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + + I+ N V R I P SR +L+ L+ A++ +V E+L+ ++ Sbjct: 1 MSSVKRTSR--DIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLRMI 58 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E+ +++ GRP + V + + I+ + + L DL+ ++ + + + Sbjct: 59 TEVGFEDSAG-GRPRGLVAVNASGGALIGVDIAETYVHVELFDLALNVLARAEENVRPGE 117 Query: 121 --DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 ++ + + + + + R+ + +++PG +D GI P + D ++PL Sbjct: 118 NLPEQMVGHVAAAVGSVVAQAGIEGARVLGVGVSVPGQVDRATGISEYAPNW-DWHDVPL 176 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 + L +H P+Y+ + + A +AE FGA+RG D + V + VGAG++ G L Sbjct: 177 LDLLTEHIAYPLYLDNPLRAVAVAELWFGAARGHGDAVIVNLGTGVGAGLVLGGGLHRGV 236 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 S+S E GHT + G+ C+CGNHGC+ET I+ + +S Q T+ Sbjct: 237 SNSAGEWGHTTIVLDGRLCHCGNHGCVETYVGAPGIMLNLRELSPRSTLLHPEDQTATIA 296 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA-ADILFPVISD 357 +L + R D +A ++ ++G +A +VNLFNP+ +++ S ++ A + L + + Sbjct: 297 ALARGVARQDPVAVKVVRDTARYLGAGIADLVNLFNPEVVVLSSWVAAALGEPLVAEVRE 356 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 ++ + ALP + + GAA Sbjct: 357 AVARHALPRPMAATDIVLSLIPTDPACLGAATFALE 392 >UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5RGV2_CLOCL Length = 393 Score = 342 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 70/389 (17%), Positives = 169/389 (43%), Gaps = 20/389 (5%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + + IK+ N V L+ + +++ D+++ ++ ++ + E++E V+E + Sbjct: 8 KKLDQETIKKINQNNVLYLLYRHDQLTKHDIAKKLGISIPTVVTNINELIELGFVEEAGV 67 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 ++ GR V + ++ + + + I++ + + L +L +++ E S + + L + Sbjct: 68 GKSTG-GRKPVIVKFLPDSRYSMGVVITKDYVRMVLTNLHFEIIKEVSISIDEE--LQSI 124 Query: 126 DRIISHIDQF----FIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 D II + +F ++ I +LPG ++ + I+ +K + Sbjct: 125 DYIIEAVKEFQKNVCEELSIDENKILGIGFSLPGTVNEKTLILENAINL-GIKNIDFKNY 183 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 PVYI+++ +A AE + +I V I +G G++ + L + Sbjct: 184 ---DFNCPVYIENEANASAYAEYFVYPDKSNSKLIFVSITEGIGTGIVFNSLLYKGANKR 240 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E GH + GK C CG +GC E AS ++L+ + + L + ++ + Sbjct: 241 AGEWGHMTIVKDGKSCACGKNGCWEVYASSKALLKTY------NKDTGLKRRNIS-EIFM 293 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + D + ++ ++ + ++ + +P KI+IG ++ D + +++ + + Sbjct: 294 EL--DEDYKTQKVVDEYLEYLAEGIKNIILIMDPDKIVIGGEIAFYEDYIKEALNEKVYK 351 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALV 390 ++ +E T+ ++ GAAL+ Sbjct: 352 PNAFFTAKDCKIEFTKLKANASVIGAALL 380 >UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG91_9CLOT Length = 403 Score = 342 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 94/404 (23%), Positives = 190/404 (47%), Gaps = 16/404 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + + + I+ N + L+ + G +R L+ L+QL A++T IV + ++ LV Sbjct: 1 MNRSIRGFNQENIQDMNRTLLLNLLRKEGICARAHLANLSQLKQATVTNIVSDFIDWGLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 +E+ GN+GR ++G+ + + + L++R++R + + +LS +L+ ++ EL + Sbjct: 61 KEVGFLV-GNKGRRSIGISINNDDFGVLAIRLARKNYTVGIFNLSGRLLDKKRVELDVNQ 119 Query: 121 DLPL-LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 + + II + + + ++ +I + +PG + G + M E+P+ Sbjct: 120 PPRVTFEAIIHEAGELIRSSESR--KIIAIGMAIPGPYSEKRGRIELMTGVLGWNEIPIQ 177 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARD--VIQVVIDHNVGAGVITDGHLLHA 237 E L+ +PV+++ D +A +A+ ++ V+ + + VGAG+I +G LL Sbjct: 178 EKLQDIFKIPVFLEQDANAGALAQYWH-NDEDYKNGVVVYIAVGQGVGAGIINNGELLKG 236 Query: 238 GSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTV 297 E+GHT + G RC CGN+GCLE S + + L + Sbjct: 237 CIGVAGEVGHTSICYNGPRCACGNYGCLENYCSSIAFTKEVNRVLRPEI-------EYNF 289 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAAD-ILFPVIS 356 + Q GD + DI + + ++N FNP I+IG +S ++ + Sbjct: 290 RQVSQLLRDGDQVVTDIFLDACDKLSVGIVNIINSFNPSVIVIGDEMSHILPSVMLERVK 349 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK-DAMYNGSL 399 +++++ LP ++++ + SN GAA+V + ++N L Sbjct: 350 SNVKERVLPEIYANMNITMSVVSNDSMAHGAAIVAINDIFNHPL 393 >UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PW32_CATAD Length = 396 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 84/394 (21%), Positives = 172/394 (43%), Gaps = 6/394 (1%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 +P +++ N V R ++R D++ ++ A+ I+ E+ A L+ E + Sbjct: 2 RPRLSGDLRRANRVEVMRSFYGGRTLTRGDVAAQLGVSVATAGTIIGELTAAGLLAETQS 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL--KDDLP 123 +G GRPA L + A + + + ++ + + D + V +A D Sbjct: 62 PRSGG-GRPASQLTMRAGAPYLVGVDLAETYVIAEIFDQAMTRVGHFQTPVAPTDDDPDS 120 Query: 124 LLDRIISHIDQFFIRH-QKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 ++ ++ + + + ++LPG +D E G+ P + +P Sbjct: 121 VVGHVVDSVQGVIAALDGVSAADVAGVGVSLPGQVDREGGVSVHAPNW-GWHGVPFTSLF 179 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + +PV + + + A T+AE +FG + D + V + VG GV+ +G LL +++ Sbjct: 180 HKRCDLPVLLDNPLKAITLAEMMFGEAGDHDDAVVVNLGTGVGLGVVAEGRLLRGRTNTA 239 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 E GHT + G C+CG+ GC+E ++L+L S + Q TV L + Sbjct: 240 GEWGHTILVADGLPCHCGSRGCVEAYVGAAALLDLLTDVDPDSPLLVPGDQAATVARLAE 299 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA-ADILFPVISDSIRQ 361 A D +A + +G LA VN+ NP+ +++G +S A + L + ++Q Sbjct: 300 AVASADPVAVATLERFARPLGMALANAVNMLNPELLVVGGWVSAAFGEPLLAAVEPVVKQ 359 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 +L +++ +++ ++ G A++ + Sbjct: 360 FSLAVPYDAVTLAASRIADNPVSLGMAVLAFETF 393 >UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F6K2_THELT Length = 403 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 166/379 (43%), Gaps = 6/379 (1%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 D +K N V R I Q+G VSR +S+ L+ ASIT I +LEA+L++E ++ Sbjct: 6 DILKDHNEKIVLRTIRQMGEVSRTTISKKTGLSIASITNITSRLLEANLIKENRYGKSKG 65 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR V L + + + +++ ++ + DL V+E+ L ++++I Sbjct: 66 -GRRPVLLGINEKHSWAIGVKVGYLYLYFVVTDLLGTPVLEQKIPLNTASYNAVVEKIAD 124 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 ++ + + I + + G +D+E+GIV + +P+G LE+ PV Sbjct: 125 FVNTIVKIPEYVDRKFLGIGVAVSGSVDSEHGIVKSSYIL-EWGNVPIGPVLEERIKAPV 183 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 + +D+ ++ +A G ++ ++ I + + VG +I G L EIGH V Sbjct: 184 LVYNDVDSFAVAHYTIGRAKKYKNCIFITLGSGVGGAMILGGKLYTG-RGGAGEIGHMTV 242 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSM---SSMLHGQPLTVDSLCQAALRG 307 GK+C CG++GCLE S +++++ + + N S L + + + +A Sbjct: 243 ICDGKKCSCGSYGCLEAEISFNALVDRIKKKTNIESLKNRSCLTTEDEAIHYIHKALQID 302 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + + +G + M+N+F P +LIG + D+ R+ + Sbjct: 303 REAVIEAFDEISVLLGVAIKNMINIFAPDYVLIGGEALEFRDLFLKKAILIARENSFGDL 362 Query: 368 SQHISVESTQFSNQGTMAG 386 + ++ + G Sbjct: 363 GDDVVIDIDDMGEVAWVQG 381 >UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCW6_SANKS Length = 429 Score = 341 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 161/399 (40%), Gaps = 14/399 (3%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 + + + I G VSR+ L+ L A+++ +VR +++ LV E E+ G+ Sbjct: 6 RSASTSVIVDAIRASGTVSRVGLTVTTGLTGATVSTVVRRLIDDGLVVETGRAESTG-GK 64 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHI 132 P V L ++ A + + + + I + DL+ V + + +L + + Sbjct: 65 PRVLLELDPTARYAVGVHLDHASITCTVTDLAGTSVALSTHPGPGTRSPAEVLVETAAEV 124 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 D+ R+ I PG + ++ G+ P + P+ L + TG+PV + Sbjct: 125 DRLVDEAGVDRSRVLGIGFVAPGPLTSDGGMHRTPPEMRAWTDYPITSELGRLTGLPVVL 184 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 ++D +A + E G + + + +GAG++ DG S + EIGHT +D Sbjct: 185 ENDATASAIGEHWAGGTGTENSFAVLYMGTGLGAGLVLDGVAYRGSSGNAGEIGHTTLDL 244 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQL----RLNQSMSSMLHGQPLTVDSLCQA----- 303 G C+CG GC+E +A +++ A+ +S+ G + Sbjct: 245 DGPVCWCGTRGCVEVLAGPAAVVAEARRSPDLAAAAGLSTGTSGSEPQPSVVSDLAAVAR 304 Query: 304 -ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGS-PLSKAADILFPVISDSIRQ 361 A G A+D++ +V VNL + + +++ L+ A DI P + + Sbjct: 305 AAAAGHPGARDVLERSARYVAAAALTAVNLLDVRMLVLTGASLAAAGDIYLPAVRGVLAS 364 Query: 362 QALPAYSQHISVESTQFSNQGTMA-GAALVKDAMYNGSL 399 + + V ++ + GAALV + Sbjct: 365 SLFARGAHPVDVRLSRTAATAPALGGAALVLQTHLVPAP 403 >UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus faecium 1,141,733 RepID=C9BHD6_ENTFC Length = 386 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 160/390 (41%), Gaps = 19/390 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN-R 71 I++ N + + I + V R +L+ L AS++ I +++L+ L+ E + +A Sbjct: 8 IRELNQATLLKTIIEKKEVFRAELAAATGLNKASVSDITKKLLDDQLIVETRVGDASTAG 67 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR + L ++ LS I + L + ++ S+ D + D I Sbjct: 68 GRKPIMLTFNPQSATALSFDIGYNYLEGMLSYIDGTVLSSISKRRISIDATNVFDHIQES 127 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 I Q + + + I + G++ + P+Y D+ ++ L + L H P+Y Sbjct: 128 IHQLIRDLPETPHGIVGMTIGIHGVVFED--HPIFTPYY-DLHKIDLQKELADHYDFPIY 184 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 + ++ + + E F + ++++ + I +G G++ G L E+GH+ + Sbjct: 185 LHNEANLAALGEYTFSS--HYQNLVSISIHSGIGCGIVASGKLQVGKHGKAGELGHSILY 242 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 P G+ C CGN GCLE AS ++ E + D L +GD A Sbjct: 243 PDGRPCPCGNSGCLEQYASSKAVYEEFARLKGL--------DYVNSDILTDYVKKGDTDA 294 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 ++ A + + ++ +++P I+I S L + + + I +++ I Sbjct: 295 TALLKKNAALLSIGINNIIMMYDPDVIVINSKLYEKNPQMI----EQIHANLTSQFTKDI 350 Query: 372 SVESTQFSNQGTMAGA-ALVKDAMYNGSLL 400 V +T+ + GA A+ N L Sbjct: 351 LVRNTRLKGNAILYGALAVTAQHFLNIRKL 380 >UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobacterium dentium RepID=D2Q6V0_9BIFI Length = 390 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 91/406 (22%), Positives = 178/406 (43%), Gaps = 17/406 (4%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 +A G +++ N + I + G +++I+L+ + L+ +++ V +++E Sbjct: 1 MARRTNGSQTSLRRANKANLLESIHKFGAMTQIELAEITGLSTGTVSTQVHQLVEEG--- 57 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD- 120 +LE GR A + + + + L I+R ++FL + D S ++ E L K Sbjct: 58 KLETHNTIRNGRRATLVALSHDQGLGVGLSITRRDLFLVIIDYSKDIIAEHRLPLPPKHK 117 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L+R I I++ + I + L +D + + Sbjct: 118 ADTTLERAIRLINETLENAGTDAGEIVGIGVALGAPVDFHAQTAAIPGILPGWDGIDIHT 177 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L VPV + +D +A + EA G + G ++ + + + VG+G++ +G ++H + Sbjct: 178 PLTTAFHVPVMVDNDANAAAICEARMGVALGKQNFVYIGTNDGVGSGIMVNGDIMHGVTG 237 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 EIGH QVDP G C CGN GCL TI ++ L + +T++ L Sbjct: 238 LAGEIGHIQVDPLGSICSCGNRGCLNTIVDEARLVSLLS----------VTHGNMTMEDL 287 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 Q A GD + +I +G + + + +P+ +++G L+ + D S++++ Sbjct: 288 VQTANAGDPGCRRVIADAAVRIGTVASDLCISVDPEMVVVGGSLAMSGDTFIEPFSETLQ 347 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 + P I V + Q+ + G+ GAA++ + +LLQG Sbjct: 348 RLLFPNALTPIQVLAAQYPDSGSALGAAIMVIELAEKK---KLLQG 390 >UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Micrococcaceae RepID=A9WVF3_RENSM Length = 426 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 83/407 (20%), Positives = 166/407 (40%), Gaps = 6/407 (1%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLG-PVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 + ++ ++ N + I + +SR++L+ + LA +++ I R +L+ +L+ E Sbjct: 18 RRRGTNLPRMGDFNLSVILDAIRRSPEGLSRVELAGIVGLAAQTVSNICRRLLDQNLIVE 77 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDD 121 G+P L + + + + + E AL DL+ +V + + Sbjct: 78 AGK-YGSGPGKPRTILRLNPGGMYAVGVHLDPVETNYALLDLTGAVVTTRTHLTQPDAEP 136 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +D + I+ + ++ + I PG ID G + P + L E Sbjct: 137 QQTIDAMAEEIESIISEQNIERNKIAGLGIAAPGPIDGATGAIVEPPHMPGWGTVELRER 196 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L + +PV + D++A +AE G G+ I V I +G+G++ D ++ S + Sbjct: 197 LHKAVELPVLLDKDVTAAAVAEIWAGGLSGSGSFIFVYIGTGIGSGLVLDDEVVRGSSGN 256 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRL-NQSMSSMLHGQPLTVDSL 300 E+GH DP G C CG GC++ ++I+ A + + + + +L Sbjct: 257 AGEVGHIIADPDGPDCDCGKRGCVKVTCMPENIVAEAAAAGFKAVLDNKGKSLQVQMAAL 316 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADI-LFPVISDSI 359 +AAL GD A+ I+ +++ NL + ++ G P K + + I Sbjct: 317 SEAALAGDAAAQKILDLAAERFATAVSVQANLLDVDHVVFGGPFWKHFEPTFLAKLPQRI 376 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRLLQ 405 +++ + + V T + GAA LV + + +L Sbjct: 377 NERSATSKVHSVEVVGTGVGSDVGAVGAACLVLEDTFGPHAASLVLA 423 >UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F498_ACIC5 Length = 402 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 173/384 (45%), Gaps = 15/384 (3%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 + ++ N + +I P+SR DL+R++ L +++++I+ +++E ++E + Sbjct: 12 ASSETARRINRDILLEIIRARQPISRADLARVSGLQRSTVSQIIEQLIEELWIREGAVAR 71 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 RGR LV+ + L+ + + +A+ DL+ +++ L D + Sbjct: 72 LP-RGRRPTMLVLNED-VVVLTADLHPRKAAIAVIDLNGRVLSHAELSL-SHDPAKVATA 128 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 I+ + + H +K R + ++LPG +D++ + P + L +AL + Sbjct: 129 ILECMRRLRQAHPEKSFR--GVGVSLPGRVDSQTQRLIFAPNLH-WPDFDLRQALAKGLR 185 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +PV +++ +A +E FG +G ++ + + + +G G++ +G L+ + E GH Sbjct: 186 MPVEMENAANACLTSELWFGRMQGVQNAVLITVSEGIGGGILANGQLVTGQNGMAGEFGH 245 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 +DP G RC CG GC ET AS + L Q S + + L Sbjct: 246 ISLDPRGPRCGCGQRGCWETFASCKAALRHYQE-------SSGASRRIAYQDLLALGAEK 298 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 + A +T +GR L +++ +P+ +LI ++ A +++ P + + Q L Sbjct: 299 NPHAVGALTEQARQIGRGLRLVIASLSPELVLIAGEVTSAWNLVAPALRKEMEAQWLGGT 358 Query: 368 SQHISVESTQFSNQGTMAGAALVK 391 +E T S+ + GAA + Sbjct: 359 M--PRIEPTFDSDAARLRGAAAML 380 >UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q6P6_CATAD Length = 429 Score = 340 bits (873), Expect = 6e-92, Method: Composition-based stats. Identities = 97/399 (24%), Positives = 169/399 (42%), Gaps = 32/399 (8%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE------- 62 +++ V +++ SR +L RL L+ A+++ +V +++ A LV E Sbjct: 15 PPNLREEGRLRVLQVLLASTTTSRPELVRLTGLSRATVSVLVADLISAGLVVEENGANGS 74 Query: 63 --------------LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKL 108 E+ + GRPA+ L + + + I + +AL DL Sbjct: 75 GGSSGSSGSGGSSGTPEAESRSMGRPALPLALNRSVAYAIGADIGHAHVRVALCDLHGTP 134 Query: 109 VVEESQELALKD-DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRM 167 V E S+ + LD + + + ER+ + + + +D + G + Sbjct: 135 VWETSRAKEVDRAPHETLDLAADLVRRALTENGVSGERVLGLGVGIAAPVDAD-GALSAE 193 Query: 168 PFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAG 227 + G LE+ TG+ + +D +A +AE ++GA R D++ + + +GAG Sbjct: 194 GIMPGWTGIRPGPELERRTGLATELTNDANAGALAEHMYGAGRDIEDMVYIRLSAGIGAG 253 Query: 228 VITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMS 287 VI G L EIGH G C CGN GCLETIAS ++ L Q Sbjct: 254 VIAAGRLQRGAGGLAGEIGHLPAVRDGLVCRCGNRGCLETIASPVAVARLLQDS------ 307 Query: 288 SMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA 347 G+P+ L G ++ G VGR LA +V L NP+ I++G L+ Sbjct: 308 ---WGEPVAPGDLPALLAAGTPGTARVVEDTGEAVGRALAGLVTLLNPRLIVVGGDLAAI 364 Query: 348 ADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAG 386 + LF + I + ALP+ ++ ++V + + + + G Sbjct: 365 GEPLFEPLRRGIARYALPSAARQVAVVAGRLGSSAEVRG 403 >UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K724_THENN Length = 388 Score = 339 bits (872), Expect = 7e-92, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 171/386 (44%), Gaps = 23/386 (5%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + +IK N + ++I + P+SR D+S + L P+S+T++ +E+++ ++E+ Sbjct: 14 NSPRIKILNKKTILKVIHENHPLSRSDISEITGLTPSSVTRLTKELIDEGYIREIGTMGK 73 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 + GR V L ++ EA+ L I + ++ + + K+ Sbjct: 74 NSPGRRRVLLDLKKEAFLSLVFDIGVNITTYGIGFFDGEVELRGTFNTP-KNPEEFFKTA 132 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 ++ H I+ ++PG++D E + P + + + + LE V Sbjct: 133 REIYERISREHSITR-----ISFSVPGMVDLEEKKILLAPNL-GWENVNIEDLLE--VDV 184 Query: 189 PVYIQHDISAWTMAEALFGAS-RGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 PV ++ + +AE R + + ++I VG G++ DG + S + E GH Sbjct: 185 PVLADNEANLSMLAEKYHSEDLRNVEEAVFIIIREGVGTGLMVDGKIFRGPSFTAGEAGH 244 Query: 248 TQVD-PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 V+ ++C+C N GC E ++S++ +E L +++ + Sbjct: 245 MTVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKEL---------EGRNSIEKFQALKQK 295 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA 366 D AK ++ ++ + +VN+ NP+ +++G + D F +I D +RQ+AL A Sbjct: 296 ND--AKRVLMRFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFFSIIEDFVRQRALKA 353 Query: 367 YSQHISVESTQFSN-QGTMAGAALVK 391 +++ + T F N + GAA++ Sbjct: 354 AVRNLKIRPTAFRNISSNLVGAAVLA 379 >UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9KEZ9_BACHD Length = 388 Score = 339 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 158/389 (40%), Gaps = 17/389 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 IK+ N A+ I + +SR DLS++ L +++ V +LE HL+ E + E+ G Sbjct: 9 IKKMNRRAILEKIIEKQEISRSDLSKITNLNKVTVSSQVASLLEEHLIIEKQYAESSG-G 67 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R + L + A L + + + L +L ++ +E +LA D +++ +IS I Sbjct: 68 RKPILLTLNENAAFTLGIDLDIKTLTFMLCNLKGAVIKKEQWKLANVDFDDVVNEMISLI 127 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 F + I I + GI+D + + P + + + +EQ +PV + Sbjct: 128 QSFLKDIPASKYGVVGIGIGIHGIVDNDE-TIAFTPG-HHWSNVNVKQPIEQAVNIPVVV 185 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 ++ + +AE + + A +++ + VG G+I + E+GH + P Sbjct: 186 ENSTNLCALAENVV-SDHEADNLLCISSFSGVGMGLIVHNAIYKGFHGYAGEVGHMIIVP 244 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 GK C CGN GC E AS ++ + + + + D + GD Sbjct: 245 EGKPCRCGNKGCWELYASEKALYQEISESTKR--------EHVDRDVVLALIEAGDEETL 296 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 + + L ++N +NP+ I+I S L P I I+ S + + Sbjct: 297 KKLDQFIYYFSLGLNNIINSYNPETIVISSGLMPH----LPNIEHKIQSHLHSKISHYKT 352 Query: 373 VESTQFSNQGTMAGAALV-KDAMYNGSLL 400 ++ + + GA + + L Sbjct: 353 LKISNLGKEACALGACFIGIKQFLEINTL 381 >UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobacterales RepID=C5RVI1_9THEO Length = 315 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 79/308 (25%), Positives = 143/308 (46%), Gaps = 5/308 (1%) Query: 89 SLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFFIRHQKKLERLT 147 + + +I L D ++ A K ++ RI + KL L Sbjct: 7 GVDLGGTKISTGLVDEKGNIIRSTKIPTMAEKGPEEVIKRIEQSVYDVLKEAGLKLSDLK 66 Query: 148 SIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFG 207 + I PG +D + G+V P +P+ + L GV V +++D +A + E LFG Sbjct: 67 GVGIGSPGPLDAKRGVVISPPNLPGWDNVPIVDILSHKLGVKVKLENDANAAAIGEHLFG 126 Query: 208 ASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLET 267 A +G + + + + +G GVI +G L +S+ EIGH ++ G RC CGN+GC E Sbjct: 127 AGKGIDNFVYITVSTGIGGGVIIEGKLYSGENSNAAEIGHHTINFNGPRCNCGNYGCFEA 186 Query: 268 IASVDSILELAQLRLNQSMSSMLHGQPLTV----DSLCQAALRGDLLAKDIITGVGAHVG 323 AS +I AQ + +M+ + + +AA GD AK+++ ++G Sbjct: 187 FASGTAIARFAQEGIQNGKDTMIRDLAKDGVVKSEHVFEAAKLGDEFAKELVDNEAFYLG 246 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 ++ ++ +NP+KI IG +S D+L+ + ++I+++AL ++ V + Sbjct: 247 VGISNIMAFYNPKKIAIGGGVSTQWDMLYDKMMETIKKKALKPNAEVCEVVRAELGENVG 306 Query: 384 MAGAALVK 391 + GAA + Sbjct: 307 VLGAAALL 314 >UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH81_KOSOT Length = 386 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 175/385 (45%), Gaps = 18/385 (4%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAG 69 + NA + ++ + +SR++LSR+ L +++ I++E L A +V+E K G Sbjct: 6 PKDTRIKNAITLLHILLKQDGISRVELSRITGLTKTTVSSIIKEFLAAGIVEESPTKPNG 65 Query: 70 NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEES-QELALKDDLPLLDRI 128 N G+ + L ++ A + L + + R I L D S K+++E + D +L+++ Sbjct: 66 NVGKTPISLHIKKNAVYTLGVHLGRHNIKTVLMDASMKVLMESNGLSYKKNDPDSVLEKL 125 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 I+ + +K ++ I I +PG +D E G++ P +E +PLGE +++ + Sbjct: 126 YLDINHIMEKAEKHGIKVGVIGIGIPGPLDPETGVIKCPPKFEGWINIPLGEIIQKKYKL 185 Query: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 PV+I++D + +AE G ++ ++ + ++++ +GAGV+ + L + EIGH+ Sbjct: 186 PVWIENDANVAALAEKWHGGAKYLKNFVYILVNEGIGAGVVINDELYQGTHDYVGEIGHS 245 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 +G+ + +L + + S +++ + + Sbjct: 246 LFYVHGQ---------------FKYLEDLYGVDVLTSQIKSCGLNAHSIEDVANLLKADN 290 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 + I+ + ++ +++L NPQ + IG ++ + L + + + Q Sbjct: 291 KIVYSIVRDSAKWLSIVVLNVIHLLNPQAVFIGGTMAALGNYLIQPVKEIVSQYLFGD-- 348 Query: 369 QHISVESTQFSNQGTMAGAALVKDA 393 Q V+ ++ S+ GA + A Sbjct: 349 QETDVKLSEISDNAVAIGAGIYATA 373 >UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWK5_9BACT Length = 410 Score = 338 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 181/394 (45%), Gaps = 13/394 (3%) Query: 9 HIDQIKQTN---AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 ++ I N + + G + +L++ ++ +ITK+V+E+++ ++V +L Sbjct: 15 NLKGISHKNNLFKRNIIAHMAVNGECTLSELTKELHISVPTITKLVQELVQENIVSDLGK 74 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQ-ELALKDDLPL 124 E GR + + A ++ + I R + + DL + +V EE + L+D Sbjct: 75 VETPG-GRRPNVFGLASSAIYFAGVNIGRDNMSFLITDLHNNIVKEELLTDFELQDRPQC 133 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 L++I S+I F + ++ + +++ G ++ G +R Y E L + +EQ Sbjct: 134 LEKICSNIAHFIDTCGVERAKILGVGVSVSGRVNPTTGRSYR---YFTSSEQSLRDMIEQ 190 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 G+ V +++D A AE S+ DV+ + + + G++ +G L + S E Sbjct: 191 RIGIRVLLENDSQARCYAEYTNSKSKDEMDVLYLHLGRGLAIGIVMNGKLYYGKSGFAGE 250 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-----QPLTVDS 299 GH C CG GCLET S +I + ++Q ++++L + + VD Sbjct: 251 FGHIPFFDNEIICSCGKKGCLETEVSGIAIEQKFGRLISQGVNTILREKYNKHEAIHVDE 310 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + AA D L+ ++I VG G+ +A ++N FNP+ +++G L++A D L + + Sbjct: 311 IIDAAKHDDNLSIELIEEVGEKAGKAVAFLINTFNPETVIVGGELAEAGDYLMLPLKSAT 370 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 + +L + ++ + GAA++ Sbjct: 371 NKYSLNLVYKDTKFRLSKMGKTASAWGAAMLIRN 404 >UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5EFJ1_9FIRM Length = 383 Score = 338 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 166/388 (42%), Gaps = 19/388 (4%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 I+ N + + I +SR +S L A+++ IV+E + LV+E + ++ Sbjct: 7 KDIRSANRLTIIKHILNKKQISRARISEETGLNKATVSTIVKEWMSLKLVEETTMGDSSG 66 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR + L + +A + +++ I + L L DL+++++ +S + + + +I Sbjct: 67 -GRRPIILTLAAKAGYCIAIDIGARRLGLILTDLNNEIISRQSIPIEKQAFSHVYQQIYI 125 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 ID+ L I++ + GIID + G++ +P + + + LEQ VPV Sbjct: 126 AIDRMIREIPPCPYGLIGISLAVRGIIDLD-GVIRFIPKLQ-WHNIDIKSLLEQRYHVPV 183 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 YI +D + E+ V+ + + G+I++G L+ +GH + Sbjct: 184 YIDNDGNLAASMESRLHPQYEELTVLCLT--DVISCGMISNGRLIRGYLGFANAVGHHTI 241 Query: 251 DP-YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 + K+C CG +GC E S +L+ A L L + +D + + + Sbjct: 242 NIQETKQCSCGKYGCWEQYCSDQYLLDEANLHLETPLE--------DIDGFIELVRKQNP 293 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 LA I+ ++ L+ ++ N + I++ S L ++ L P I I LP Sbjct: 294 LALGILDTYIKNLAIGLSNIIFFVNCEMIILNSHLIQSLPYLMPEIMKDI---ILPITHT 350 Query: 370 HISVESTQFSNQGTMAGAAL-VKDAMYN 396 + + N+ + GA+L + + Sbjct: 351 Q-EILISTLGNEAPILGASLKAIEEFFE 377 >UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6LW15_CLOB8 Length = 382 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 181/390 (46%), Gaps = 16/390 (4%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 + +IK+TN + L+ + ++++D+SR+ ++ +++ + E+ +V+++ E+ Sbjct: 5 NHSKIKETNRKKIIALLLKKNEITKLDISRILDISITTVSTNITELKSEGIVEDVRSLES 64 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRI 128 GR A+ + + + + + ++ I ++L ++ K++ +++ + Sbjct: 65 TG-GRKAIAIKLNENCRYSIGVALTPNHIKISLVNIKKKVIESMRVRHNSDGIENIINLL 123 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 +ID ++ L I I+LPG +D + GI+ + K+ L E E + + Sbjct: 124 NENIDLLMKKYNLCSANLLGIGISLPGTVDFKEGIIKYS-YLLGAKDFNLKEKFE-YLDI 181 Query: 189 PVYIQHDISAWTMAEALFGASRGA-RDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 PVY+ ++ + E F R R+++ V I +G G+I +G + ++S E+GH Sbjct: 182 PVYVDNEANLSAYYE--FLNKRDILRNLLYVSITEGLGLGIIINGKIYRGDNNSSGELGH 239 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 T++ GK+C CG GCLE S++S+++ + ++S +D + + Sbjct: 240 TKIAIDGKKCKCGARGCLEAYTSMNSLIDSYNEANSSNIS--------DIDEFEERYNQN 291 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D A D++ + L+ +V +F+P I+IG ++ + ++ + + L Sbjct: 292 DKDAHDVLNDYLKTLSLGLSNLVMIFDPSSIVIGGDINNLLNDKIDMLKKEVYKDNLFTN 351 Query: 368 SQHISVESTQFSNQGTMAGAALV-KDAMYN 396 + S+ F + GAA++ + Sbjct: 352 ENNCSISIASFKE-SYLLGAAMMPIEEFLE 380 >UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357A7 Length = 405 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 78/403 (19%), Positives = 173/403 (42%), Gaps = 13/403 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + ++ ++K+ N + +I + GP+SR ++ + L P +IT V ++E LV E Sbjct: 2 TARGTNLPRVKKQNEALIKEIIYKYGPISRSKIAEMLSLTPPTITTNVTSLIERGLVYEF 61 Query: 64 EIKEA----GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK 119 ++ + GR V + EA + + + ++ + + DL + + Sbjct: 62 AADDSDVEERSLGRKPVKINFVQEAKYAVGVEMNPYHTAICMLDLRGNEKISMRYPPMNR 121 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 + +D + +I++ + E++ + + LPG ++ + G++ F + + Sbjct: 122 TYVEEMDVLARNINKLIQDSGTEPEKILGVGVGLPGFVEPDVGVLRES-FKTEWNGKNIA 180 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L + +PV I+++ + E +FG + +I + + + ++ + Sbjct: 181 RDLSRRLDLPVLIENNARVRAIGEEMFGKTLRPDSFAYYLISYGIACPLFVKNRMITGDN 240 Query: 240 SSLVEIGHTQVDPYGKRC-YCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG-----Q 293 +S E GH VD G +C CG++GCLE +AS +I++ + +S+ML + Sbjct: 241 ASAGEAGHMVVDINGPKCETCGHNGCLEELASERAIIKKCKAAARAGVSTMLTELCPDIE 300 Query: 294 PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFP 353 LT+ + A D ++ ++G LA ++NL +P +++ + K Sbjct: 301 GLTMKDVLMAEECNDAYVVKVMEEAVMYLGVTLANIINLISPPLVIVDGYMMKVKRN-RR 359 Query: 354 VISDSIRQQALPAYSQHISVESTQFSNQGTMA-GAALVKDAMY 395 + + ++ Q I +E F+ GAAL ++ Sbjct: 360 QLLEETKKHIFGLNDQEIEIEFIDFNPLTGARGGAALAIKQLF 402 >UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9WJ57_CHLAA Length = 408 Score = 337 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 103/391 (26%), Positives = 185/391 (47%), Gaps = 6/391 (1%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + + N V RLI +LG VSR DL+RL L +++ +V E++E LV Sbjct: 1 MTTLGEKATRQHTRDVNLRLVLRLIYELGAVSRADLARLTNLTRTTVSDVVGELIERGLV 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E + G GR + L V + ++ ++ + AL L + S+ + + Sbjct: 61 IETGLATGGGIGRTPMLLSVAEWSRPVAAISVNADSVEGALVSLRGNVGRRISRSIQGQT 120 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L+ + +D+ + L I +T PG+I+ +G++ R + ++PLG+ Sbjct: 121 GADALNTLQETLDELIQTANQP---LLGIGVTTPGLINASSGMIVRAVGL-EWADLPLGQ 176 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L + G+PV + +D +AE LFG RG +++ + I VGAG++ +G L Sbjct: 177 LLHERYGLPVKVVNDSQCLALAEHLFGEWRGVANLVVLKIGKGVGAGIVLNGQLYAGEGF 236 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML--HGQPLTVD 298 EIGH G C CGN GCLET+ D++L A+ + + +S+L + L++ Sbjct: 237 GAGEIGHLAFTANGLLCKCGNRGCLETVLGSDALLHQARTAIAANPNSILAAYASDLSLG 296 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + + A GD +A+ +IT A G +A +++L + + +LI ++ + ++ Sbjct: 297 RIAEGAAMGDPVAQHVITTAAAATGAAVATIISLLSVRHVLITGRITAFGETFAELVRRE 356 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAAL 389 + Q+ALPA + + + GAA Sbjct: 357 VAQRALPALVRDTEIRLAPAPTITPLIGAAA 387 >UniRef50_B2GIX7 Putative NagC family transcriptional regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GIX7_KOCRD Length = 421 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 176/392 (44%), Gaps = 15/392 (3%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 + PG ++ N V + LG V++ ++R LAP++++ IV+E+ L+ Sbjct: 38 RASAPGSQAALRLANRRRVVDAVRGLGAVTQARIARETALAPSTVSSIVKELTACDLL-- 95 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDD 121 E + GR + A H L + + + +AL DL+ +++ + EL Sbjct: 96 --TVEPDHGGRRGQRVRFSASAGHLLGVDVGHRHVAVALADLNLEILAQRRAELSPRHGA 153 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 +LD D+ ER+ I LP +D + + + + E Sbjct: 154 REVLDVARGMADELRDELGIPAERVLRAGIGLPAPVDAQGRGLDSAVILPHWSGLDVREL 213 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 G PV +++D +A ++E GA RGARD+ + + H VGAG++ G L + + Sbjct: 214 AAHVLGCPVVVENDANAGAVSEHALGAGRGARDMAYLKVSHGVGAGLVLGGTLYRGATGA 273 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH +D C CGN GCLET S ++LEL + +V + Sbjct: 274 AGEIGHITLDERAGLCRCGNRGCLETFVSSAAVLELVRPSGQPVE---------SVSDVV 324 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 AAL GD +++ G +G ++A + NL NP+ +++G L++A ++L + ++ + Sbjct: 325 DAALAGDPGCSRVVSDTGRVIGVVVAQLCNLLNPELVVLGGDLARAGELLLEPLRTAVDR 384 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 L S + V ++ + + GA L+ Sbjct: 385 YTLHGSS-PVRVVPSELGPRAHLTGALLLARE 415 >UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3141A Length = 397 Score = 336 bits (864), Expect = 7e-91, Method: Composition-based stats. Identities = 90/379 (23%), Positives = 170/379 (44%), Gaps = 11/379 (2%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 +QTN V R + + +R +L+ L+ +++ + E+++A +V + E + GR Sbjct: 12 RQTNRFKVLRALYEHPGSTRTELAADTGLSRPTVSTVTDELVQAGIVAQHEDTQP-RTGR 70 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIISHI 132 P V L + + A + + L + + +A+ DLS +++ E + + D + Sbjct: 71 PPVLLSLASGAAYAVGLDMGHAHVQVAVSDLSGQILGHERSAADVDHAPVESFDLAGELV 130 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 + L+R+ + + L +D G V + +E +PV + Sbjct: 131 HGALGQAGVPLDRVIGVGMALAAPVDRATGTVFADGILPSWGRVQPAIEMEARLDLPVMV 190 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +D + + E +FGA R +++ V + +G G++ G S E+GH +V P Sbjct: 191 HNDANLGALGEHVFGAGRDVAEMMYVRLSAGLGLGLVLGGRPYGGTSGVAGELGHVRVAP 250 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CGN GCLET+AS ++ L +P++V+ L + GD A+ Sbjct: 251 EGLICRCGNRGCLETVASSTAVARLLAHS---------RDEPVSVERLLELVADGDRGAR 301 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 + G VG LA +VNLFNP+ I++G L+ D L + +I + A+ + ++ Sbjct: 302 RAVAEAGKTVGEALATVVNLFNPELIIVGGDLAAGGDALLAPLRTAIDEYAVAPAAGAVT 361 Query: 373 VESTQFSNQGTMAGAALVK 391 V ++ + GA + Sbjct: 362 VSLGALGDKAEVLGAVALV 380 >UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35AB4 Length = 401 Score = 336 bits (864), Expect = 8e-91, Method: Composition-based stats. Identities = 71/398 (17%), Positives = 163/398 (40%), Gaps = 16/398 (4%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE--IKEAGNR 71 K +N + I + P++R D++ ++ PA++T V ++ V+EL + + Sbjct: 8 KASNRSRILECIYRNAPIARTDIAEETEITPATVTMNVTTLISEGFVRELGEVSTDEASS 67 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR V + + + + + L ++ + + + DL ++ + ++ + + D II Sbjct: 68 GRKRVLIDIIPDRAYSIGLEFTQKALVICITDLKGRIRFQRTEPFNEELAGRITDAIIGG 127 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 + + + I +PG ++ + + + +EQ +P+ Sbjct: 128 VKDLVAESGISWDEIVGIGAAVPGHMNGSASSLI--TNRKTWQNFDPK-RIEQELPLPIV 184 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 +++ + E LF + + + DG + + EIGHT V Sbjct: 185 CENNARCMALGEYLFSPQESPDSFAFFHVGMGMFCASVVDGEMFLGENYVAGEIGHTIVS 244 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALR 306 G+RC CG +GCL+T AS + ++ A+L + +++L +T++++ A Sbjct: 245 EGGRRCECGKYGCLQTYASENHLIRNARLLYRNTPNTILRSLVSDDSQITIETITTAYSM 304 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL-- 364 GD + I ++G ++ + + NP KI + L D + + D I +Q + Sbjct: 305 GDPVIGMYIAEALKYLGITISNIAIITNPGKIFLHGQLFDNQD-IQNELMDYIERQLIFV 363 Query: 365 -PAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLI 401 Y+ ++ + + GA+ + + ++ Sbjct: 364 DRTYAGNVEILP--YGAADGAVGASALAILRFFIRPVM 399 >UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bifidobacterium RepID=C6A8T4_BIFLB Length = 401 Score = 336 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 85/381 (22%), Positives = 160/381 (41%), Gaps = 7/381 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + + N + + G SR +++ L PA+++KI +L + + Sbjct: 1 MNSRTTTEQQTLSEYNRARTLQYLHHHGIASRAQIAKALHLTPAALSKISNHLLASGAIV 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKD 120 E E R ++GL V A+ L ++ +R I + L DL+ K Sbjct: 61 ETGALEGKGN-RRSIGLAVNARAFQVLGVKFARSLIEIGLFDLAGKPSFIRELPTVENTT 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 ++ + + I + H + +I + +PG + G + +++ Sbjct: 120 IPQAIESLHAEIRRLLAEHP----HILAIGMAVPGPYLRDRGHTAVVSSMGQWRQVNFRA 175 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 E VPV I+ D A +A+ LF + ++ ++ +G GVI G +++ Sbjct: 176 EFEHAFDVPVIIEQDARAGALAQYLFDPNPANENLAYYLLGEGIGLGVIDHGTVINGSLG 235 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGH +D GK C CGN GCLE S +I E + S L + + L Sbjct: 236 AATEIGHVSIDVNGKACDCGNVGCLERYCSAVAIHEAMLGNGMLATDSRLTHREACAE-L 294 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 A GD A++++ +G VG + N FNP +I+IG +++A + L + + + Sbjct: 295 FARAQSGDGQARELVERIGTFVGYGCVTICNAFNPSRIVIGDIVAQAGEPLLQRVREVVG 354 Query: 361 QQALPAYSQHISVESTQFSNQ 381 ++ +P +Q +E + Sbjct: 355 ERVIPEITQSTQIELSALPTD 375 >UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=Actinomycetales RepID=D1BD00_SANKS Length = 395 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 177/394 (44%), Gaps = 14/394 (3%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 + T AG +++L+ P +R +L+ + A ++I + ++ + LV + GR Sbjct: 12 RTTGAGDLFQLLRDGQPRTRAELAAVTGQARSTIAARIDLLMASGLVAPAGEASSTG-GR 70 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL-LDRIISHI 132 P A L++ + LA+ DL+S ++ E +A+ D + L + Sbjct: 71 PPATFAFSPAARVVLAVDLGATHAHLAVTDLASTVLAELEAPIAIADGPDVILGWVAQTG 130 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 ++ + + L+ L S+ + LPG ++ G P ++ + L G V + Sbjct: 131 EELVLSTGRTLDDLVSVGVGLPGPVEHSTGRPINPPIMPAWDDVDVPGGLSARLGASVLV 190 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV-D 251 +D++ + E G D++ V + +GAG+I+DG L + +IGH V D Sbjct: 191 DNDVNIMALGEHRT-EWPGVSDLLFVKVATGIGAGIISDGALRRGAQGAAGDIGHVAVSD 249 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 C CGN GCLE +AS ++ + SS + GDL A Sbjct: 250 RSEVPCRCGNLGCLEAVASGQAVAAQLAATGLAATSSN---------DVVALVRAGDLYA 300 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 + G +G +LA V+L NP I++G ++ + + L I + + +++LP +QH+ Sbjct: 301 SRAVRQAGRDIGTVLAGCVSLLNPSMIVVGGVVASSGEHLIAGIREVVYRRSLPLATQHL 360 Query: 372 SVESTQFSNQGTMAGA-ALVKDAMYNGSLLIRLL 404 + +++ N+ + GA A+ D + + + + L+ Sbjct: 361 RIVASRTGNRAGVLGASAMAVDHVLSSAAIDALI 394 >UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSD8_ACIC1 Length = 420 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 87/396 (21%), Positives = 162/396 (40%), Gaps = 12/396 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 + LI + V+R +L + + +I + + ++ L+ E E + GR G Sbjct: 15 LAQLLALIRRGSAVTRSELVQSSGFGRTAIARRLDHLMALGLIAESEPLPSTG-GRMPRG 73 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFF 136 + +A L + I + DL +++ + L R+ + + + Sbjct: 74 VYFRADAGRLLVAELGATSIAAGICDLDCRVLSSREEAWDIAAGPESTLARLEALLSELL 133 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 HQ ++ I + LPG I+ G P P+ E L + PV++ +D+ Sbjct: 134 RDHQA---KVWGIGVGLPGPIEFATGRPVSPPIMPGWDRYPVRERLAKRFSAPVWVDNDV 190 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV-DPYGK 255 + + E G R D+I + I +GAG+++ G L +IGH V D Sbjct: 191 NVLALGELRAGVGRAHSDLIYIKIGTGIGAGIVSGGRLHRGAQGCAGDIGHVAVTDDQAV 250 Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL-----CQAALRGDLL 310 C CGN GCLE +A ++ A + S L + L A GD Sbjct: 251 VCRCGNIGCLEAVAGGAALARRATAWAREGRSGYLQQRLTEGGDLTAATIAAGAAAGDTG 310 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 +++ +G LA VN FNP ++IG +++A + I + ++LP ++ Sbjct: 311 CVELLAAAARQIGDSLATFVNFFNPSIVIIGGGVAQAGNAFLASIRQRVYSRSLPLATRD 370 Query: 371 ISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRLLQ 405 + + + + G + GAA +V D + + +L ++ Sbjct: 371 LQIVLSSLGDIGGLIGAAHMVVDEILSPKVLSLWIK 406 >UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG67_9FIRM Length = 398 Score = 334 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 90/404 (22%), Positives = 175/404 (43%), Gaps = 11/404 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + G+ +K N V +++ GP+SR +++ A L+ + T I+ ++ A L+ Sbjct: 1 MAGTARGGNAQDMKTRNRLLVLQMLCTYGPLSRGEIAARAGLSKMTATNIISDLETAGLI 60 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK- 119 E E E+ GR + + + + I R L DLS+++V ES Sbjct: 61 AE-EKGESAGAGRRPGLIRLSPASPLVCGITIGRRRCEAVLADLSAQIVARESACYDNAL 119 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 D L + + + R + + I + G +D G + P + + +P+ Sbjct: 120 DGPRLSELLARLCSRLLKRVDRP---VAGIGVAALGPLDARAGTLLNPPNFYGIGHLPVR 176 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 L +G+P + HD+SA +AE L+GA + + I +GAG++ DG L + Sbjct: 177 AILSDASGLPCVLLHDVSAAALAEQLYGAGQAFESFFYLQIRDGIGAGMVLDGALFDGVA 236 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 E+GH ++ G +C CG GCLE AS ++L A+ ++ ++ P Sbjct: 237 GLSGELGHVSINFEGPQCACGGRGCLECYASERALLAYAREYAARTGTAA----PENWSD 292 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 AA GD + +V L+ + L + ++ +G +L ++ + Sbjct: 293 AISAAGTGDAACAAALERYCGYVAAALSNALCLIDVHRVFVG-YDGDGGGLLERLLEQRV 351 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALV-KDAMYNGSLLIR 402 ++ A + I+V + F + ++ GAA + +++G+ + Sbjct: 352 NERLHIAGCRRITVRRSSFGSDASVYGAAALAARCVFDGAFALP 395 >UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y7Z7_9BURK Length = 413 Score = 334 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 70/396 (17%), Positives = 150/396 (37%), Gaps = 42/396 (10%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 G +K+ N + R + +SR L+ + L ++++ +VRE+++ V E Sbjct: 22 MKTTGDQQLVKRINRSVLLRQLRAQPGLSRAQLATESGLTKSTVSLLVRELIDEGWVTET 81 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 ++ ++GRP+ L ++T + + + ++ + + L+ +++ + L Sbjct: 82 DVTTTQSQGRPSTPLHIDTRSRGLIGVEVAVEALRVVGVSLTGQVLCAAEEALNGTKPED 141 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + + I + + + Q++ + + LPG D G++ P + + L + Sbjct: 142 VCRQAARLIARTYKQLQQRNIEALGVGVGLPGAFDEATGMLRFAPNL-GWRNVDLMPPIA 200 Query: 184 QHT------GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHA 237 + + V++Q++ ++E F +I V VGAG++ + L Sbjct: 201 EALAKAKLPELKVHLQNEADTAALSEYEFSDGDAKDSLIFVTCGVGVGAGIVLNDRLFTG 260 Query: 238 GSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTV 297 EIGH + G C CG GC ET ++ Sbjct: 261 VQGMAGEIGHNILQIDGPLCSCGRRGCAETFFGARTL----------------------- 297 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 A D T G ++G +L + FNP +++G P + D Sbjct: 298 ------AKLPDP------TQGGHYLGVVLQNLWTTFNPSTLVVGGPSCDTYPGIVKAAQD 345 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 ++++ A A +V ++ + GAA + Sbjct: 346 TLQRYADAAGMAAPTVRPARYGLLASAVGAAALVLH 381 >UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=Micrococcineae RepID=D1BAZ9_SANKS Length = 420 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 98/389 (25%), Positives = 179/389 (46%), Gaps = 14/389 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 G +++ N + I + G +++++L L+PA+I+ IV+E+L +V Sbjct: 1 MAISGSQSSLREANRALIVDTIKKFGGLTQVELVAATGLSPATISTIVKELLGGGIV--- 57 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 + + GR A + + ++ + +AL D +V E++ L + Sbjct: 58 DTQSTTRSGRRAQMVTLARRVGLVAGVQFGHRHLKVALGDFGRTVVAEQTMPLPVDHRSD 117 Query: 124 L-LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 LDR + + R ++ L +I +T+P +D G + LG+ L Sbjct: 118 TGLDRAALLVVELLERVGAPIDELLTIGLTVPAPVDVSTGEISVHGIMRGWDGQQLGQVL 177 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + PV + +D +A +AE GA RG +DV+ V + ++ GAG++ GHL + + Sbjct: 178 SERLARPVVVDNDANAAALAEHELGAGRGYQDVVFVRMSYSTGAGIMLGGHLHRGFAGTA 237 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 EIGH QVDP G C CGN GCL+T+ S ++L+L + LT+ L Sbjct: 238 GEIGHVQVDPRGDICRCGNRGCLDTVVSSTALLDLLRGSHG----------DLTLRDLVS 287 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 AL GDL + ++ G +G ++A + NPQ +++G L+ A +++ + ++ + Sbjct: 288 RALAGDLGCRRVLADAGERIGGVVATLAGTLNPQLVVVGGELAAAGEVIVEPLRQAVLRH 347 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVK 391 P + V + Q + GA L+ Sbjct: 348 VAPNTVAPLEVVPGELGEQAEVTGALLLA 376 >UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3V9_9CLOT Length = 386 Score = 334 bits (857), Expect = 4e-90, Method: Composition-based stats. Identities = 80/391 (20%), Positives = 157/391 (40%), Gaps = 31/391 (7%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M P H++ I++ N + ++ + PVSR L+R L+ +++ IV E++ L+ Sbjct: 6 MAKGGNPRHLELIRRINRSLILNMVKERQPVSRAQLARALNLSKTTVSSIVDELVRKKLL 65 Query: 61 QELEIK-EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK 119 E +G GRP+V L + + + + I+ + L + DL+ + + E + Sbjct: 66 VEYGDCCPSGGAGRPSVMLGFNPRSAYCIGIDIASANLRLIITDLAGEALYETKRP---- 121 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 + +I +++ K+E + + I +PGI+ E +V + PL Sbjct: 122 -PSSRMGELIGVVEEAVRDCGLKMEAVFGMGIGVPGIVTAEGSVVR--AKFLGWSNFPLK 178 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 +E+H PV++++ ++ + E G+ D++ V I +G VI G L+H Sbjct: 179 RLMEEHFPFPVFVENGVNLAALGERWLGSGDQVDDMLFVRIGTGIGGAVICGGQLIHGAG 238 Query: 240 SSLVEIGHTQVDPY---GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT 296 + EIG+ G G G LE S ++ G Sbjct: 239 GNAGEIGYFLESRDVELGNVNQPGQQGVLERKCSGAAL----------------TGHGRP 282 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 + L A +GD A ++ + +A V+L P K +IG +S+ + + Sbjct: 283 TEELFAAYGQGDREAARVVEPFIRDLSVAIANCVSLLGPAKAVIGGDVSEQMSPVIYRLR 342 Query: 357 DSIRQQALPAYSQHISVESTQFSNQGTMAGA 387 + + + L + + + GA Sbjct: 343 EEVER--LTPIRADVCL--ASLGGRAGALGA 369 >UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D084_HALOH Length = 378 Score = 333 bits (855), Expect = 7e-90, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 168/393 (42%), Gaps = 20/393 (5%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Q G++ +K+ N + + + Q GP+SR DL+++ L+P +I+ I E+++ L+ E+ Sbjct: 2 QRGNMKLMKKINRALIIQTLSQQGPLSRADLTKITDLSPTTISSITEELIQEGLIVEVGE 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 E+ GR + L + E ++ LS+ I+ +++ L +L +++ + L Sbjct: 62 GESKG-GRRPILLDINPEDFYILSVNIAVDVMYVYLFNLKFQVINSVHDLIKKPVSPNLD 120 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQH 185 ++ + + + + + I GII+ E G++ + + PL + +++ Sbjct: 121 SQLKELVQKVVENSNIGKKNVVGMGIGATGIINKEKGLITYSASL-GISDYPLLDKVKRE 179 Query: 186 TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEI 245 P+ +++D + + E FG R + ++I +G G+I D + E Sbjct: 180 YDFPILLENDTNLAALGEKKFGCGRQLTNFFYIMIGSAIGGGIIIDNEIYRGKFGGAGEF 239 Query: 246 GHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 GH V+ G C CGN GCL + I ++ +S ++ Sbjct: 240 GHITVEKDGPLCECGNQGCLNAVL-TPYITVRSREEFRKSFQEIIKDDNFDS-------- 290 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK-AADILFPVISDSIRQQAL 364 + ++ + LF+P+ I++G +++ A + + + I++ +L Sbjct: 291 -----CR--YHEFCEYLAMAITNYTKLFDPEAIVLGGEIARIAPERFYIDLEKYIKRMSL 343 Query: 365 PAYSQHISVESTQFSNQGTMA-GAALVKDAMYN 396 + I V + + GA L D +YN Sbjct: 344 KGMNSKIPVLPSSIRTNAVVLGGACLCFDNLYN 376 >UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB Length = 421 Score = 333 bits (854), Expect = 9e-90, Method: Composition-based stats. Identities = 92/383 (24%), Positives = 174/383 (45%), Gaps = 6/383 (1%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + DQI++ N V + + + GP++RIDL ++ +L+PA++T I ++L+ L+ L Sbjct: 1 MTRKADRDQIRRQNRSIVLQALRRNGPMARIDLGQMTRLSPATVTAITSDLLDQELILSL 60 Query: 64 EIKEAGN---RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA--L 118 E +E RGRP L + +A + + +R+S I LAL + + ++V E Sbjct: 61 ESEEPKAPQARGRPRTLLKLNPDAVYTIGVRLSVNNIDLALVNFAGEVVRSERSHFDSAT 120 Query: 119 KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 +D + +I I QF R+ I + G+++TE G+V P + +++P+ Sbjct: 121 EDAASFPETLIGTIRQFLNDAGIVPSRVREIGVAAQGVVETETGVVAWSPAFAG-RKIPI 179 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 L G YI +D + T A +R + +++D+ VG G+ D L Sbjct: 180 VGPLHDAFGADCYISNDTNMITEALHWSDPNRYSGTFAVIMLDYGVGMGLYLDNRLFSGA 239 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 S + E GH P G C CG GCLE S +++ A + S + + Sbjct: 240 SGTAAEFGHANHLPGGALCRCGKKGCLEAYLSDYALVRAASHLPENTDPSTIKAGVGGLA 299 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 L + A GD A + G +G LA ++ + +P++I++ +A + + + Sbjct: 300 RLIELAGSGDKDACNAFHEAGRVLGYGLARVIAMIDPKRIVLTGAAMRAFSFMEKGMWEG 359 Query: 359 IRQQALPAYSQHISVESTQFSNQ 381 + + + + S++ ++ Sbjct: 360 LEEALVADLRNNFSLDVMPWNED 382 >UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3G4_9BACL Length = 304 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 66/308 (21%), Positives = 135/308 (43%), Gaps = 10/308 (3%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFFIRHQKKLE 144 + + + I + + L ++ + S ++DR+ + I Sbjct: 3 YAIGIDIGGTKTAIGLIGTDGEVRTKVSLPTDQTVGPEVMVDRMAAAIQDILTAQGIAES 62 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 L I + PG ++T+ G + P P+ ++L+++ +P+ +++D +A +AE Sbjct: 63 ELLGIGVGAPGPLNTKEGKIAEPPNLRGWWNFPIVDSLKRYFSLPIRLENDATAAALAEK 122 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 GA++ A + + I +GAG+ + G L+ S + ++GH VDP C CG GC Sbjct: 123 WLGAAKDAEHFVFITISTGIGAGIYSHGKLITGASGNAGDVGHIVVDPSVGTCVCGQKGC 182 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGR 324 E +AS ++ A L G+ ++ A G + ++++ V ++G Sbjct: 183 WEFVASGTAVARQASELL---------GREVSSKEAFDLAAAGQPVIQELVAKVFENIGV 233 Query: 325 ILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTM 384 ++N F+P+K++IG +S+ D LF + D + + AL + + + Sbjct: 234 GCVTLINTFDPEKLVIGGGVSQVGDPLFNAVRDYVSKYALNPSGRQTPIVPAALHQDAGL 293 Query: 385 AGAALVKD 392 GAA + Sbjct: 294 IGAAALIH 301 >UniRef50_B2V1I0 Putative transcriptional repressor of the xylose operon n=2 Tax=Clostridium botulinum E RepID=B2V1I0_CLOBA Length = 379 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 79/386 (20%), Positives = 166/386 (43%), Gaps = 20/386 (5%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 ++ N + + I +SR DLS L A+++ IV+E+L+ L++E I ++ Sbjct: 7 KDLRSLNKIKIIQSILYKKQISRADLSTFTSLNKATVSVIVKELLDLRLIEESTIGDSTG 66 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR + L + + + +++ I+ I + + +LS+K++ S + + + + + S Sbjct: 67 -GRKPIILTINEDIGYVIAIDINITMIDIIVTNLSNKILSSYSIKNEDNNFETIFNNLFS 125 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 I + + L I++ + G++D NG++ +P K + + LE VP+ Sbjct: 126 LIHKIQNVMPSSIYNLVGISLAVRGVVDL-NGLIKFIPQL-GWKNIDIRSKLENEFNVPI 183 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 YI++D + MAE D++ V ID + +G+I + L+ IGH + Sbjct: 184 YIENDGNLSAMAEHKL--MPNYNDMLVVDIDDVITSGIICNSQLVKGFLGFANAIGHHVI 241 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 + GK+C CG GCLE S +IL L ++ + Sbjct: 242 NCDGKQCTCGKRGCLEQYCSNLAILSHINQSLPVK----------DIEEFVNLVKEENPY 291 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 A + H+ L ++ + N + I++ S + + PV + ++ +++ Sbjct: 292 ALSTLDYFIDHLAIGLTNLIFILNCEVIVLNSYILRE----IPVAMQKLHEKIFLPITRY 347 Query: 371 ISVESTQFSNQGTMAGAA-LVKDAMY 395 + ++ + + GA + + Y Sbjct: 348 QDLYLSKLGKKAPLIGACNICVEQFY 373 >UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetales RepID=Q0SE61_RHOSR Length = 400 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 172/408 (42%), Gaps = 18/408 (4%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G V+ LI +R ++ L L+ ++ V + + LV Sbjct: 4 MRTPRSTTSPATG----GDVFALIRAGQATTRTEIGTLTGLSRTAVAARVSSLQASGLVV 59 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLV-VEESQELALKD 120 E E + GRP V L +A LS I R LA+ DL+ ++ E+ ++ Sbjct: 60 EREEGVSTG-GRPPVKLSFHVQAGVVLSAAIGRSRTQLAICDLAGDVIVAEDVEQEIGTS 118 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L+ I + + R I I+LPG +DTE G P +PL Sbjct: 119 PAELMPVIAQRLIALRESLGETAGRTVGIGISLPGTVDTERGCSLNSPMMSGWDGVPLQP 178 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L T PV++ +D + +AE G R D++ + +GAG+++ G L Sbjct: 179 FLADVTDAPVFVDNDANVMVLAERR-GERRDFADMLLIKASTGLGAGLVSGGVLQRGALG 237 Query: 241 SLVEIGHT-QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 + EIGHT G C CG+ GC+E +A +++ Q + + + Sbjct: 238 AAGEIGHTKTAAAQGVVCRCGDVGCIEAVAGGWALVRNLQEQGREVTH---------IRD 288 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + AL GD A+ +I G +G +L+ +NL NP+ +++G +++A D + +++ Sbjct: 289 VITLALAGDAEARRMIRESGRQIGEVLSGAINLLNPEVVIVGGDMAQAYDTFVAGLRETL 348 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRLLQG 406 A+ +Q + + + G+A + D + + + RLL G Sbjct: 349 YGNAIAVATQQLQILPWTHGELSGVVGSATMALDHVLSVRAVDRLLAG 396 >UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C6B3W7_RHILS Length = 405 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 86/394 (21%), Positives = 166/394 (42%), Gaps = 15/394 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 G + N + L+ + GP SR D++ + L+PA++T +V ++LE +V E Sbjct: 1 MKLKGDQTTARAMNRRLILNLLRREGPRSRADIATVIGLSPAAVTFVVADLLEEGIVIE- 59 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 G GR + + + E + ++ + DL++ V L D Sbjct: 60 GKTVPGLTGRRPIPVDINYEHALAVGFKLMVDSVECVATDLATNPVAAMRVSLGGHDPDK 119 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 + D + S + + + +L I I++PG+I+ E R ++ +PL + Sbjct: 120 VADLLASTVPELVKLAGRPNAKLAGIGISMPGVINHEQTACVRSYRFK-WDNVPLASLVA 178 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 VPV+++ D +A+ +A+ LFG R R++ + + + ++ DG L + + Sbjct: 179 SRVHVPVWLEDDTNAYAIAQQLFGLGRQHRNMAVLAVGVGISCALVIDGKLYRGANGAAG 238 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 + GHT + G+ C CG GCL S S+L + + + L + L A Sbjct: 239 KFGHTLYEENGRLCECGKRGCLMAYHSEISMLRRWREATGR--------EELGLPELSAA 290 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 GD A ++ G +G LA +VN+ +P+ I+ G D + +++ + Sbjct: 291 LASGDTTALALVADSGRGIGTALANLVNITDPEVIVAGGEAVSLGDPFLTPLREALSART 350 Query: 364 LPAYSQHISVESTQFSNQGTMAG-AALVKDAMYN 396 + + + G AALV +++ Sbjct: 351 FRTAPPLLP----DWEDNSWARGAAALVTQKIFD 380 >UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLA5_9SPHI Length = 410 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 182/388 (46%), Gaps = 8/388 (2%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR 73 K V + G + L+R+ + S+T +V E+++ V + G+ GR Sbjct: 22 KNQKQRKVLAHLYSEGTCTLAHLTRMLHSSVPSVTSLVEELIDNQWVTPIGTA-TGSNGR 80 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHID 133 V + T++ + L +S + + ++ K++ +L L D+ L ++ + Sbjct: 81 RPVLFGLNTKSHYVAVLDVSTHDTKILFMNVQRKVIFRGDYDLRLNDNPSFLTSLVHYFH 140 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQ 193 + ++ L ++ I++PG++D G+ L + L PVY+ Sbjct: 141 NALADSEISIDDLIAVGISMPGLVDARRGLNLTYKNLHQ-TGESLPQWLSAELNKPVYLI 199 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 +D A + E+ FG ++G + V+ + ID VG G+I +G + S E+GH QVDP Sbjct: 200 NDTKATVLGESRFGGAQGKKQVLAINIDWGVGLGIIVNGEVFQGASGFAGELGHIQVDPD 259 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALRGD 308 G+ C+CG GCL TI S ++++ AQ + S L H + +D + AA GD Sbjct: 260 GELCFCGKIGCLSTITSASALVKRAQTDILAGQVSKLATFRDHVDQIDIDEVINAANSGD 319 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 A DI+ G +G+ LAI ++LFNP+ I++ L KAA + I +I + L + Sbjct: 320 SYAIDILHETGYQLGKGLAIAISLFNPEIIVVDGVLFKAAAFILNTIEQAISKYCLSDFR 379 Query: 369 QHISVESTQFSNQGTMAGA-ALVKDAMY 395 +++E TQ + G A + + ++ Sbjct: 380 NDMTIEVTQLNGTAKWLGTHAYMMEDIF 407 >UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar 6b str. SLCC5334 RepID=A0AF76_LISW6 Length = 378 Score = 331 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 92/393 (23%), Positives = 168/393 (42%), Gaps = 19/393 (4%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 + I+++N V I Q GP SR LS L A+I+ IV++++ L+ E+ I E Sbjct: 3 TNRTVIRESNERIVLNTIAQKGPHSRALLSDTIGLNKATISDIVKKLIAQKLINEVGIGE 62 Query: 68 AGN-RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 + N GR + L + +A +S+ I I + + L E + ++ Sbjct: 63 STNLGGRKPIMLELNAKAGFSVSVDIGYNYIDVMAQRLDGTAYKRELFPFIVIKRETIIQ 122 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 I +D F K + I I + G++ + P Y D+ + AL + Sbjct: 123 EISDILDVFLSSLPKSPFGIVGILIAIHGVVLDNQ--IQFTPAY-DLAGLDFSSALHEQF 179 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 PVY++++ + +++ S +++ + I +G+GVI + L + EIG Sbjct: 180 ACPVYLENEANLLAVSDHTKEES--YANLVSISIHSGIGSGVILNNELYTGINGYAGEIG 237 Query: 247 HT-QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAAL 305 H V G+ C CG GCLE AS +IL+ Q R + V LC+A Sbjct: 238 HMQIVTENGRPCPCGASGCLECYASEKNILDTYQTRTGN--------KNALVTDLCRAFT 289 Query: 306 RGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALP 365 + A +I + ++ + + L+NP+ I I S +S+ L P + I + Sbjct: 290 EKEEEAMAVINDMVRYLATGIQNLTALYNPEIIFINSEISR----LIPDFTKQIESRLTS 345 Query: 366 AYSQHISVESTQFSNQGTMAGAALVKDAMYNGS 398 S++I+++ + + + GA + + S Sbjct: 346 FTSKNIAIKESHLGEEAILYGAGYLIIQRFLAS 378 >UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=A1WMZ8_VEREI Length = 372 Score = 331 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 76/361 (21%), Positives = 167/361 (46%), Gaps = 8/361 (2%) Query: 37 SRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGE 96 +R + + +V +L+ ++ E+ ++E+ GR A L + L + + Sbjct: 2 ARRLAYSKSKANAMVAALLDEGVLDEVGLQESSG-GRRAETLRLSESLGAVLGVDMDATS 60 Query: 97 IFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPG 155 + LAL ++ + + + ++ +L ++ + + R +L +I + +PG Sbjct: 61 MQLALMRPDMAVLARQCETIDVRRGPGVILAQLCGLMRELMARCGLSSSQLIAIGMGVPG 120 Query: 156 IIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDV 215 +D +G + P D + + L + PV++ +D++ + + R D Sbjct: 121 PVDFASGQLVNPPLMPDWDGFSIRDYLREAFVAPVFVDNDVNLMALGKLWR-LQRTLSDF 179 Query: 216 IQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSIL 275 + + + +G G++ G + + S ++GH VD G RC+CGN GC+E +A+ +++ Sbjct: 180 LVIKVGTGIGCGIVCHGQVYRGTNGSAGDVGHICVDQAGPRCHCGNQGCVEAMAAAPALV 239 Query: 276 ELAQLRLNQSMSSMLHGQ-----PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMV 330 A + SS L + L ++ L QA+ GD+ A +I G+ VG++LA +V Sbjct: 240 RAAIEVAQKGESSWLAERLQASGSLGIEDLAQASRVGDVAANILIQRAGSLVGQMLASVV 299 Query: 331 NLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 N FNP + IG ++ + + S+ ++L ++H+ ++ ++ + GA ++ Sbjct: 300 NFFNPSHVFIGGLVADMGPLFLASVRQSVYHRSLALSTRHLEIQCAPLADDAALVGAGVL 359 Query: 391 K 391 Sbjct: 360 A 360 >UniRef50_A5ZP32 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZP32_9FIRM Length = 406 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 96/410 (23%), Positives = 170/410 (41%), Gaps = 18/410 (4%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + +KQ N G + +LI SRI+LS+ LA ++T IV E LE + Sbjct: 6 MAKS--GVNNTLLKQRNRGLILKLIATGQCSSRIELSQKTGLAKMTVTYIVNEFLERGIF 63 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 +E + + +GR V L + +A + + + R + L D+ KL+ + + + Sbjct: 64 EERQKVQVEGKGRNPVQLCISDKAPKLIGVHLYREICSVILCDIQLKLLKKICFPVTEET 123 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L++ I +DQ + I P +D G + P + + ++ + Sbjct: 124 APQLMEHIFHALDQIMETLGDEKIYGIGIGAIGP--VDKNRGKILAPPNFYGLHDLEIAR 181 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 +E+H +PV+ + + + E +GA D I V + + VG+G++ +G L S Sbjct: 182 EIEEHCHMPVFFDGESNCAAIMEKYYGAGTDCEDFIYVDLANGVGSGLVVNGELYANTSG 241 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + E+GHT +D G+ C CGN GCLE S + + Q Q + Sbjct: 242 MICELGHTSIDWQGEPCSCGNRGCLERYISSNVLESQLQKVTGDMKDFRGFCQEMD---- 297 Query: 301 CQAALRGD--------LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 +A G+ + T + + L VN NPQKI+IG D Sbjct: 298 -EAIKEGEGNTFTKRQQDMDRVFTEMTEKLSCALVGFVNSLNPQKIIIGHEGYWIPDPYL 356 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSLLI 401 I + ++ + + I V + F ++ T+ G + A++ GS Sbjct: 357 CKIEKLVNERHIERKYRQIQVVKSGFKDEATVYGCTGALLTAVFEGSFFD 406 >UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ANX8_SEBTE Length = 388 Score = 330 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 169/394 (42%), Gaps = 10/394 (2%) Query: 13 IKQTNAG--AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 +K+ N I +SRI LS +L PA++TKI++++ L++ I ++ Sbjct: 1 MKKLNITDYKALEEIRTNNKISRIKLSGSLELTPAAVTKIIKKLSGLKLIENNNILKSTG 60 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GRP L + L + I AL L +L+ + + ++ +L + Sbjct: 61 -GRPEKSLKINHRYKMILGINFGPEFIETALSYLDGELLCMKRRNFYIRSQEKILRILFE 119 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 ID + + + I + L G ++ E GI P + K + + E +E+ +PV Sbjct: 120 EIDNVLEEY--SKDDILGIGLALHGTVNREKGISIFSPHF-GWKNLNIQELIEKKYSLPV 176 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ- 249 I +D+ A +AE FG ++ + + + I + +G + +G S EIGH Sbjct: 177 IIDNDVRAMAIAEHEFGRAQNTDNFLVIHISNGIGGAIFLNGKTYEGSDFSAGEIGHITA 236 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 V+ +RC CG +GCLE +S ++I L + + L + + + A Sbjct: 237 VENSSRRCSCGKYGCLEAESSDEAIKNKVLTELEKIQEKV--DISLKTEDIYKMAAEKKE 294 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 ++ +G+ + ++N+ N + +++ + + F ++ I++ L + Sbjct: 295 PYFSVVRNSSYEIGKAVGNLLNILNIKLVIVAGRIVNTDSLFFVNLNKGIKKNILDGLEK 354 Query: 370 HISVESTQFSNQGTMAGA-ALVKDAMYNGSLLIR 402 + + + + GA +LV ++ G LI+ Sbjct: 355 DLHTVPAKLYDSIGIYGAFSLVTTNLFKGRKLIK 388 >UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=2 Tax=Clavibacter michiganensis RepID=B0RFZ3_CLAMS Length = 444 Score = 330 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 86/425 (20%), Positives = 162/425 (38%), Gaps = 22/425 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQL-GPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 V + ++ I N V + + SR +++ L+ ++T + R +++ LV Sbjct: 22 VPMRRGTNLPAIGGYNRTVVLDAVRRAAEGASRSEIAERTGLSAQTVTNVSRRLIDEGLV 81 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 +E G+P L + + + + I L DL ++ S Sbjct: 82 REGGTVI-RGPGKPRTLLHLVAGGRFAVGVHMDPAVITSVLLDLEGTVLRHVSSPTPSAS 140 Query: 121 -DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 ++ + +D + + + PG ID G+V P + +PL Sbjct: 141 RPDEVVALVARLVDGLIAGAGVDRGAVLGVGLAAPGPIDVGAGLVLDPPMLPHWRHVPLR 200 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 AL TG+PV ++ D++A +AE FG R + V G G++ G + S Sbjct: 201 SALSTATGLPVLLEKDVTAAAVAELWFGPG-DRRHLAFVYYGTGFGTGLVLGGEPVRGAS 259 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQL----RLNQSMSSMLHGQPL 295 S+ + GH V G+RC CG GC+ + + +++ A R + L Sbjct: 260 SNAGDAGHIMVAARGRRCTCGRVGCVGELITPHALVRQAVEGGVLRAGDVSDAALEEAAA 319 Query: 296 TVDSL------------CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP 343 + D++ A D A+ I+ H+ R + I VNL + +++ G P Sbjct: 320 SGDAVDMRLIGEAFHALAARADTEDGSARRIVEAAARHLARAIVIQVNLLDLDEVVCGGP 379 Query: 344 LSK-AADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLI 401 A ++ + + +R+ + V + GAA LV D ++ Sbjct: 380 FWHPIARLVLETLPEEVRRSPALIAKHPVRVVESAVGEDVAAVGAACLVLDNAFSPRPSA 439 Query: 402 RLLQG 406 L++G Sbjct: 440 MLIRG 444 >UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C348_BEUC1 Length = 410 Score = 330 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 84/382 (21%), Positives = 166/382 (43%), Gaps = 15/382 (3%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN-RGRPAVG 77 V+ I GP+SR +L L L +++ ++ ++ LV E ++ +G+ GR A Sbjct: 11 ARVFGEIWHHGPLSRSELVALTGLTKSTVFQLTEDLQRDGLVVETGLRTSGSQGGRRATL 70 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFI 137 L +A + + + +A+ D +++ S+ + + R+ I + Sbjct: 71 LQANPDAVRVVGVHLGGTRTSVAITDTFGRVLDARSRPTVRRRPDESVARVAEMIGELSA 130 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDIS 197 H ++ + +PG+ID + G+ P +++P+ + + P + + Sbjct: 131 EHGAPS----AVGVAVPGLIDRDTGLCLVAPNL-GWRDVPVATLIGEAVQAPTIALNTVQ 185 Query: 198 AWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV----DPY 253 A +AE + + + VG +ITDG+LL E+GH QV DP Sbjct: 186 AMAVAEMAQLRPDERMTLAMLYVGTGVGTALITDGNLLRGARGLAGELGHLQVRDPGDPE 245 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKD 313 +C CG GCLE++ D+I+ A R + G+ LT + + + A GD A+ Sbjct: 246 AVKCACGRVGCLESLVGADAIVRRATQRGIAA-----AGRRLTPELVGELASDGDAAARS 300 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 +I + +G A +V L NP +++ ++ D+L + +++ ++ P + + V Sbjct: 301 LIQDIAVEMGEAAAALVQLTNPDTVVVAGSVASMGDMLLDPLRETVVRRTQPELRESLDV 360 Query: 374 ESTQFSNQGTMAGAALVKDAMY 395 + NQG + GA + Sbjct: 361 RRSLLDNQGKLRGAITLALQAL 382 >UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XND9_MEIRU Length = 397 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 152/394 (38%), Gaps = 21/394 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 +A P IK+ N + + + GP SR L+R L ++++ +V+EMLE L+ Sbjct: 1 MARTTPLDQQAIKRLNRRLILEALRRHGPQSRAALARAVGLTKSTVSTLVQEMLEEGLLD 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E + GRP L L + + L L DL++ + + + Sbjct: 61 E-GSRHKPGLGRPGTALEFSPRHTLALGVELGVENTQLVLLDLNNTIHDKWDWVESPHTP 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L +R+ +Q R RL I + +PG+++ + P E Sbjct: 120 --LAERLTKLAEQVQSRL-SDPTRLLGIGLAVPGVVNGRR--LLYAPG-PGWHNEQPAEM 173 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE VP + +D +A + E +G + ++ V++ +G G++ DG + + Sbjct: 174 LEALLKVPTLVDNDANAAALGETFWGEQQ--SPLVYVLMTTGLGTGLVVDGQVYRGRLGA 231 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+GH G+ G +E S+ +++E Q + + Sbjct: 232 AGELGHW---LTGQPHSRSRAGDVEGTLSLRAMVERYQAA---------SNRKEGFWGIL 279 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 Q A D A + + +GR + + F+P +++G ++A L + +I Sbjct: 280 QRAEHQDPYALQALQNLAYELGRFVVNLCVAFDPAVVVLGGAGAEAWKWLEAPLRQTIHN 339 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 A I V+ + F + GAA + + Sbjct: 340 LAFIPEHAEIPVKPSAFGHLAPAMGAAALVLQRF 373 >UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178996E Length = 317 Score = 328 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 74/317 (23%), Positives = 142/317 (44%), Gaps = 10/317 (3%) Query: 81 ETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFFIRH 139 + + + + +I AL D +L+ E E A + ++ RI + I Sbjct: 6 NKQQEFVVGVDLGGTKIAAALFDSEGQLLNREQMETAGARTAEEVVARITNMIRSV---- 61 Query: 140 QKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAW 199 L + + PG +++ GIV + +PL +E+ V + +D +A Sbjct: 62 -SGGHPLRGVGMASPGTVNSREGIVIHGTNLPEWTNVPLKAWMERDLNTEVQVLNDANAA 120 Query: 200 TMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYC 259 E + GA RG+ +++ V + +G+G++ DG L +S E+GH +DP G +C C Sbjct: 121 AWGEYVRGAGRGSTNMVYVTLSTGIGSGIVLDGKLFLGSNSFAGELGHHIIDPSGPQCNC 180 Query: 260 GNHGCLETIASVDSILELAQLRLNQSMSSM----LHGQPLTVDSLCQAALRGDLLAKDII 315 G+HGC E AS +I A R+ S + + + +A D +A ++I Sbjct: 181 GSHGCWEVFASGTAIGLAASQRMLTQTSVISELAAADGGVNARHVFEAKRLHDPVAVEVI 240 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 ++ L +++ FNP +I++G +S+A ++LFP + + + +P+Y + Sbjct: 241 DRAVYYMALGLVNVIHSFNPDRIVVGGGVSRAGELLFPQLREMTDKLVMPSYLGTYEIVP 300 Query: 376 TQFSNQGTMAGAALVKD 392 + + GAA + Sbjct: 301 AGLRDDVGLVGAAALFQ 317 >UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavida DSM 17836 RepID=D2Q094_9ACTO Length = 423 Score = 328 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 127/318 (39%), Gaps = 15/318 (4%) Query: 85 WHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLE 144 + + I ++ + D ++ ++ KD D I + + Sbjct: 30 ALTIGIDIGGTKVAAGVVDPEGNILDRLRRDTPTKDPKETEDAIAEVVHDL-----ESRH 84 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 + ++ I G +D V P + PL +A+E+ G+PV +++D +A +E Sbjct: 85 DVIAVGIGAAGFVDGTRSSVLFAPHLA-WRHEPLRDAVERRLGLPVVVENDANAAAWSEW 143 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 FG +G ++ V + +G ++ DG L E GH QV P G RC CGN GC Sbjct: 144 RFGGGQGESHLVCVTLGTGIGGAILNDGALQRGKFGIAGEFGHMQVVPGGHRCECGNRGC 203 Query: 265 LETIASVDSILELAQLRLNQS--------MSSMLHGQPLTVDSLCQAALRGDLLAKDIIT 316 E AS +++ A+ ++ + + + + A GD +A +++ Sbjct: 204 WEQYASGNALTREARELALSGSPVAHNLLRAAEGDPRRINGPMVTELAKDGDPVAVELLE 263 Query: 317 GVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA-YSQHISVES 375 VG +G LA + +P +IG +S A ++L ++ ++ + + Sbjct: 264 DVGRWLGIGLANLAAALDPGTFVIGGGVSDAGELLLAPAREAFKRTLTGRGFRPEARIVR 323 Query: 376 TQFSNQGTMAGAALVKDA 393 + M GAA + Sbjct: 324 AVLGPEAGMVGAADLARE 341 >UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD Length = 330 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 138/316 (43%), Gaps = 8/316 (2%) Query: 85 WHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR-IISHIDQFFIRHQKKL 143 Y+ + + I +A + ++V + +D L+ I +D+ H K Sbjct: 4 RWYVGVDVGGTTIKMAFLTTAGEIVDKWEIPTNKQDGGALITTNIADALDKRLSGHHKSK 63 Query: 144 ERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAE 203 L I + PG I+ + G ++ ++ PL + LE+ T +PV + +D + + E Sbjct: 64 SDLIGIGLGAPGFIEMDTGFIYHAVNI-GWRDFPLKDKLEEETKLPVIVDNDANIAALGE 122 Query: 204 ALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP-YGKRCYCGNH 262 GA GA++++ + + VG G++ +G++LH + EIGH V P G C CG Sbjct: 123 MWKGAGDGAKNMLLITLGTGVGGGIVANGNILHGVNGMAGEIGHITVIPEGGAPCNCGKT 182 Query: 263 GCLETIASVDSILELAQLRLNQSMSSMLHGQ-----PLTVDSLCQAALRGDLLAKDIITG 317 GCLET+AS I +A + + S L LT + AA D A ++ Sbjct: 183 GCLETVASATGIARIATEGVTEHKESQLALDYDKHGVLTAKDVFSAADASDAFALSVVDH 242 Query: 318 VGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ 377 + ++G +A + N NP+KI+IG +SKA D L I ALP + Sbjct: 243 IAYYLGFAIANLANALNPEKIVIGGGVSKAGDTLLKPIKQHFEAYALPRVADGAEFRIAT 302 Query: 378 FSNQGTMAGAALVKDA 393 N + G + Sbjct: 303 LGNDAGVIGGGWLVKQ 318 >UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WTI5_RENSM Length = 403 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 82/377 (21%), Positives = 150/377 (39%), Gaps = 21/377 (5%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 A+ LI SR DL+R LAP++IT+ + E++EA L+ E GR L Sbjct: 30 SAILSLIASNPASSRADLARKLNLAPSTITQRINELIEAGLIAESGAGGHTG-GRRPTLL 88 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFFI 137 + +A L+ + ++ ++S L+ + +L I + Sbjct: 89 SLVADAGCILAADLGAAHAWVGRLNMSCALLDSSLISIDISAGPEAVLPIISEAMRSLIE 148 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDIS 197 L + + LPG +D G+V + P+ + L + + +D + Sbjct: 149 D---DTPPLRGVGLALPGPVDFTRGMVDSPSRMRGWHQYPVRDWLSREFDTAASVDNDAN 205 Query: 198 AWTMAEALFGASRGAR-----DVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 + E + D + + +G G+I G L S + +I H QV Sbjct: 206 MMALGEYSLRQRQNPDTKNRTDTLFLKAGAAIGCGLILQGQLYRGASGTSGDIAHVQVSA 265 Query: 253 YGK-RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 G+ C CG+ GCLET+AS +I+ + + + + AL GD Sbjct: 266 AGELPCACGHRGCLETVASGTAIVSQLIEAGVEVK---------DLADVIRFALNGDTQT 316 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 + G +G+ L+ +VN NP +++G LS+ + I + P ++++ Sbjct: 317 TTRLRAAGRLLGQTLSTVVNFINPSLVVLGGGLSQV-EPYVAAIRSQLYAGCHPLAAKNL 375 Query: 372 SVESTQFSNQGTMAGAA 388 +E +Q +Q + GA Sbjct: 376 LIEPSQAGSQAGLLGAG 392 >UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=B5XVY7_KLEP3 Length = 402 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 163/396 (41%), Gaps = 22/396 (5%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 +++ + N + + G ++R +L+RL L P +++ IV EM + L+ + + Sbjct: 5 GTNLEHARVHNRRVIIEAVRLHGELTRAELARLTALTPQTVSNIVAEMEQMDLLTSHQPR 64 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 A RG+PAV + + + + + + + + L DL+ ++ + Sbjct: 65 RASGRGQPAVPVSLNPASAWSIGIHLDHQTLIVVLVDLAGEVHFRRLILVQKPQPGATFA 124 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 R+ +D+ R+ + + +PG E + + + L + + Sbjct: 125 RLAEVLDEIRALPTLDWSRVLGMGVVMPGPFGVEGISSTGPTTLNGWEGVDVAAELGRLS 184 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 G+PV +++D + + E G +R + + I +GAG+ TDGH+ + + E+G Sbjct: 185 GLPVTLENDATVAAIGERFHGVARQLNSFVYLYIGTGLGAGIFTDGHVYTGHAHNAGEVG 244 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 H V P G+ CYCGN GCLE S+ + A L L+VD A Sbjct: 245 HIVVAPNGRPCYCGNEGCLERYVSLQA----AYEFCGLDPYRALPEDLLSVD-----AAL 295 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGS----PLSKAADILFPVISDSIRQQ 362 D I+ + + + ++ +F+ + +++G PL + P + S+R + Sbjct: 296 FDQWITSILAP----LRQAINLLECVFDAETVVVGGMMPAPLLEKVLARLPPLYQSVRGR 351 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALV-KDAMYNG 397 LPA V+ GAA + +N Sbjct: 352 YLPAQ----RVKMGMTGTDTAALGAAALPIFDEFNP 383 >UniRef50_Q185Y3 Putative regulator of a specific sugar metabolism n=6 Tax=Clostridium difficile RepID=Q185Y3_CLOD6 Length = 404 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 187/403 (46%), Gaps = 6/403 (1%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M++ Q +I +K N + +L+ P+SR+DL++ L +++ +V E++ +++ Sbjct: 1 MMSNKQGSNIKDVKIKNKLIILKLLSTNTPMSRVDLAKSTGLTKMTLSNLVTELINENMI 60 Query: 61 QELEIKE--AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL 118 +E+E A + GR + L + + + I R + + DL +V + S+ Sbjct: 61 REIESSTLNAHSSGRKPILLDISNISPCICGILIRRNICKVIISDLKGNIVKQLSETYPK 120 Query: 119 KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 +L II + ++ K+ I+ P +D NG + P + +V + + Sbjct: 121 CLSNDVLKDIIKRMFTKIMKINKRDIIGIGISSIGP--VDDINGTILNPPDFGNVSNLNI 178 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 + +++ + +P+++ +D ++ +AE ++G + + I + I + +GAG++ + L Sbjct: 179 VDFIKEMSDLPIFLINDANSGALAEKMYGLGKNISNYIYLHIMNGIGAGLVLENKLHTGN 238 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML-HGQPLTV 297 EIGHT ++ G C CGN+GCL+ SV ++++ + + +S L + + ++ Sbjct: 239 LGQSGEIGHTSINFSGPLCSCGNNGCLDYYTSVSNLIKRIESLSHIYPNSPLINCKDFSL 298 Query: 298 DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISD 357 L A D LA ++ +V L + L + I+IG + + + Sbjct: 299 VKLIDEANNKDSLAMFLLDEFCTYVSYALVNTLTLIDCSSIIIGYDFNIPGTFIENTLLK 358 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMYNGSL 399 + A + + ISV + F + G+ A+V +NGS+ Sbjct: 359 KLTASASFSKYKKISVRHSNFGANAPLIGSIAIVSYNFFNGSI 401 >UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3C7_9BACT Length = 322 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 138/316 (43%), Gaps = 2/316 (0%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL-DRIISHIDQFFIRHQKKLE 144 + + + + + + ++ + S + + ++ +I I + + Sbjct: 7 YIIGVDLGGTNLKAGIVGRDGNILYQFSIKTNAHAESQVISHQICELIAGIIKNVRIEKS 66 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 + I + PG+ID + + P +++P+ + + G+P +++D +A E Sbjct: 67 DILGIGLGSPGLIDKKGETILFSPNLSKWRDIPIKKIISDTFGLPCILENDANAAAWGEK 126 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 GA + ++ + + +G G+I D L +++ EIGH + G C CGN+GC Sbjct: 127 WVGAGKDVSSLVMLTLGTGIGGGIILDNKLWRGINNTAGEIGHMSIQTDGPLCNCGNYGC 186 Query: 265 LETIASVDSILELAQLRLNQSMSSML-HGQPLTVDSLCQAALRGDLLAKDIITGVGAHVG 323 +E AS ++ + L +S+L + +T + +AA++GD + II G ++G Sbjct: 187 IEVYASAPGMVRRFRELLESGKASLLKKDEEITAKRINEAAVQGDGASLSIIEETGRYLG 246 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 + ++++ NP +++ L + ++L + +I ++ L A + + +Q Sbjct: 247 IAIVNIIHILNPGAVVLSGGLIGSGELLMRPVKRTIEERVLKASYKDTKILFSQLGTDAG 306 Query: 384 MAGAALVKDAMYNGSL 399 + GAA S Sbjct: 307 IIGAAGCLLKELEISA 322 >UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KQ9_SYMTH Length = 391 Score = 327 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 86/395 (21%), Positives = 166/395 (42%), Gaps = 16/395 (4%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 +P + +KQ N AV I GP+SR++L+ L L+ ++T IVR++L+ LV+E Sbjct: 1 MPRPANARLMKQLNRQAVLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEK 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSS--KLVVEESQELALKDD 121 + ++ GRP + L+ A L++ + ++ L DLS ++ E D Sbjct: 61 GLGQSSG-GRPPIMLLFNPAARFVLAVCLEGERLWGGLADLSGALQVEAEGVLSPDPHDP 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + + R + RL ++A+ +PG I G V P +E+PL + Sbjct: 120 A---RSVCDFLQGLIDRSGVEASRLAAVAVGVPG-IAHTEGTVSHAPSLGWWQEVPLRDR 175 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L Q GVPV +++D++ + E GA G ++ + + +GAG++ DG+L ++ Sbjct: 176 LRQCFGVPVVVENDVNLMALGEYFQGAGVGVANLALMHVSEGIGAGILIDGNLFRGARNA 235 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+G+ + P R + G E S +I + Q L ++ V L Sbjct: 236 AGEVGYLPLGPLSPR-RPQDFGLFELHYSSRAIRQQLQAALPEAPGDDGRP----VRRLR 290 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + A G A+ + H +A + + NP+ +L+ ++ + Sbjct: 291 ELAEAGLPWARSLFGDALRHWAHAVASITCILNPELVLLAGDAVDCGREGLSEVNRIVAD 350 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMYN 396 + ++ + GA + ++ + Sbjct: 351 LV----PDPPEIRFAVLGSRAALTGAVAMALSLAD 381 >UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAU2_RUMHA Length = 399 Score = 327 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 84/391 (21%), Positives = 170/391 (43%), Gaps = 26/391 (6%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 + + I+ N V I PVSR +L++ L A+I+ IV+E+LE + ++E+ + Sbjct: 18 ANQEMIRNNNRRLVLEFIINNPPVSRAELAKQLSLTKATISNIVQELLEQNFIREIGSAQ 77 Query: 68 AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDR 127 GR + L LSL I +I L +L ++ + +D+ LL Sbjct: 78 TS-MGRKPILLEFNKAYGFALSLEIQPQQIIALLTNLKGEVQEIKKIPFCPQDN--LLQH 134 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMP---LGEALEQ 184 + ++ + + ++ ++I + G++ + + P+Y +P LG L++ Sbjct: 135 LEQILNFYIRENTAFKNKIIGVSIGIYGVV--QKNEILFTPYYP----LPKSGLGTHLQE 188 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 +PV+++++ + + EA F +++I + + +G G++ +G L E Sbjct: 189 TFQIPVFVENEANLSVLGEAAFHH--KYKNMIHINVHDGIGMGILVNGRLYKGRDGYAGE 246 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 GHT + P GK C CGN GC E AS +ILE R + + +T+ + Sbjct: 247 FGHTILFPDGKPCPCGNQGCFELYASQRAILENYAARQKK--------ENVTISEFLKDY 298 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 LA +++ ++ + ++N FN I++ S S P I+ I + Sbjct: 299 DANLPLAHEMMDLFVKYISIGINNIINTFNTDIIVLNSAFSNH----IPDINQRISEYLA 354 Query: 365 PAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 ++ ++ ++ N + G A + + Sbjct: 355 GHQNRDCNIIPSKLGNLSCLLGGARISVENF 385 >UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E0R0_DICTD Length = 396 Score = 327 bits (839), Expect = 5e-88, Method: Composition-based stats. Identities = 86/414 (20%), Positives = 175/414 (42%), Gaps = 41/414 (9%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 + G Q ++ N + + +SR ++++ L+ +++T++V +++ ++ E Sbjct: 5 RTGRGGRASQQREVNKTIILNAFLRCRNISRTEIAKRFNLSKSTVTRLVNNLIDEGMIIE 64 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL 122 +E GR A+ L + E + L++++ +L+ D + + E L K+ Sbjct: 65 IEPSSEKKIGRKAIVLGLNPEYRNALAIKVGVTYTYLSKIDFAMNI-KEIKSFLTPKNPQ 123 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 LD + F + LE+ ++ I +PGI+D V P + K +PLG+ + Sbjct: 124 DFLDELEKATQMLF---PEGLEKTHAVGIGIPGIVDNTFKNVVVAPNL-NWKNLPLGDMI 179 Query: 183 EQH------TGVPVYIQHDISAWTMAEALFGASRGARDV--IQVVIDHNVGAGVITDGHL 234 + +PV + ++ + +AE + G D+ + V + +G G+I DG L Sbjct: 180 AERMRRAFSVEIPVKMDNEANMAVVAEGMLGTKIEYNDLNIVYVYVGEGIGTGLILDGKL 239 Query: 235 LHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDS-ILELAQLRLNQSMSSMLHGQ 293 ++ E GH + G +C CGN GC E AS+ I E A L + Sbjct: 240 YRGRYNTAGEFGHMTIMKDGIKCKCGNLGCWERYASLGGDIAEKAGFDLEK--------- 290 Query: 294 PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK-----AA 348 + A D A + + L ++N NP I++G PL K Sbjct: 291 --------ETAEIADEKA---LKKYVDELTVGLINIINGLNPDVIILGGPLIKKDTKDVW 339 Query: 349 DILFPVISDSIRQQALPAYSQHISVESTQFSNQ-GTMAGAALVKD-AMYNGSLL 400 + + + + ++++ + + + +E T F + + GA + ++ G +L Sbjct: 340 EFIRQEVKKIVEEKSITSDAGKVRIELTSFLDYPAELVGAGIWAFWDIFEGPVL 393 >UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID=C6WCK9_ACTMD Length = 435 Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 166/401 (41%), Gaps = 15/401 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + + +++ N A+ + GP+SR +L L+ A+++ +++ LV Sbjct: 12 PAKRATVRDLRRHNRSALLSTLYFEGPLSRQELVARTGLSAATVSTATAGLVDERLVVGA 71 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GRP L V H + + + + + L DL+ + + +L D L Sbjct: 72 GTVESDG-GRPRSLLRVNPGYGHVVGVDVGETGVAVELFDLALRRIAALDHDLPPTDPLA 130 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYE----DVKEMPLG 179 + I + + + + + I +PG ++ G +PL Sbjct: 131 VGALIAAAVPEVIALAGADQGSVLGVGIGVPGEVERRGGAWGAATLVHAQTLGWSGVPLA 190 Query: 180 EALEQH-TGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 E + T +P+++++ AE FGA RG+R V+ ++ VGA V+ DG + Sbjct: 191 ELVRAGGTTLPLFVENGAKTQGQAEMWFGAGRGSRHVVVALLASGVGAAVVADGAVQRGS 250 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRL--------NQSMSSML 290 +SS E GHT V G+RC CG HGCLE ++LE + + + ++ Sbjct: 251 TSSAGEWGHTTVVHGGRRCRCGAHGCLEAYVGAGAVLERYRGLGGELGEGDERAAFAELV 310 Query: 291 HGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAAD 349 G LA ++ ++G +A +VNLFNP+ I++G + + Sbjct: 311 ALAGGGTLGGGSPPAGGAQLATRVLEEAVGYLGAGIATLVNLFNPELIVLGGWAGAALGE 370 Query: 350 ILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 P I + R+ AL + +E+ + GAA + Sbjct: 371 GWLPSIVAATREHALRHPFARVRLEAGRLGPDAVAVGAATL 411 >UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MXJ9_SACVD Length = 413 Score = 326 bits (838), Expect = 8e-88, Method: Composition-based stats. Identities = 84/408 (20%), Positives = 156/408 (38%), Gaps = 46/408 (11%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + P +++ N V I +SR ++ L A+++ +V ++ A LV+ Sbjct: 1 MTDIGPADQHTVRRHNCALVLDTIAASPGISRAGVAARTGLTKATVSSLVDRLVTASLVR 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E + GR L + H L + I+ + L L+ ++ E ++ + + Sbjct: 61 EDGRQHRSGPGRRGTSLSLSPHGPHGLGVEIAVDHVTTCLIGLTGEVRDEHTRRVDNRGR 120 Query: 122 L--PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 +L RI +++ R + + I + +PG+++ NG V P +++ L Sbjct: 121 SVGRVLARIAREMNEALDRAHRNGIVVGGIGVAVPGLVEAANGWVRMAPNL-GWRDVDLI 179 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFG------------------ASRGARDVIQVVID 221 L + VP E + G + V + Sbjct: 180 TELHRRVAVP-----------FGELVVGNEADLAALAELAAPRLHCEDAAPDSFVYVSGE 228 Query: 222 HNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLR 281 VGAG++ DG L E+GH V G RC CG GCLE +A D+IL+ A + Sbjct: 229 VGVGAGIVLDGELFRGTHGFGGELGHFPVQQRGPRCSCGARGCLERLAGQDAILDRAGVD 288 Query: 282 LNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIG 341 VD+LC GD A G +G L+ +VNL + +++G Sbjct: 289 --------------DVDTLCVRLEDGDRTAAAAARSAGRLLGTALSGVVNLLDVSTVVLG 334 Query: 342 SPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAAL 389 ++ L + + + + + + V + + + GAA+ Sbjct: 335 GIYARLYPWLAGPLHTELTARVVSTPWRSVDVRRSTVGPEAAVRGAAI 382 >UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID=C5C1Z1_BEUC1 Length = 403 Score = 326 bits (837), Expect = 9e-88, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 162/387 (41%), Gaps = 15/387 (3%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVV 80 + +L+ +R DL + ++I V +L LV + + + GRP Sbjct: 26 LLQLLRDGRARTRADLVAETGQSRSTIATRVDALLATGLVASVGSRASTG-GRPPTAFAF 84 Query: 81 ETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIISHIDQFFIRH 139 + + L + + LA+ DL+ ++ E ++ + + D +L + + R Sbjct: 85 DPTSRVVLGVDLGAAHGRLAVTDLAGSILAEHAEPVRISDAPEKVLGWVARTGHELLDRA 144 Query: 140 QKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAW 199 + L + + LPG ++ G P + + L H P+ + +D++ Sbjct: 145 GRPSTDLAGLGLGLPGPVEHSTGRPVDPPIMPGWHGVDVPGILGAHFAAPILVDNDVNLM 204 Query: 200 TMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR--C 257 + E G D++ V + +GAG+I DG L + ++GH V P G+ C Sbjct: 205 ALGEHAMGF-PDVDDLLFVKVATGIGAGIIADGELRRGAQGAAGDLGHMAV-PGGEPRLC 262 Query: 258 YCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITG 317 CGN GC+E +AS ++I + T D + GD A + Sbjct: 263 TCGNTGCVEALASGNAIATKLREAGI---------DATTSDDVVALVRAGDPTATATLRQ 313 Query: 318 VGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ 377 G +G +LA V+L NP ++IG LS A + L I + + ++LP +QH+ + T+ Sbjct: 314 AGRELGAVLAGTVSLLNPSVVVIGGSLSAAGEQLLAGIREVVYARSLPLATQHLQIVGTR 373 Query: 378 FSNQGTMAGAALVKDAMYNGSLLIRLL 404 + Q + GA+++ + I L Sbjct: 374 TARQAAVLGASVLASDFALSTARIDAL 400 >UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT5_ACIBL Length = 347 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 77/321 (23%), Positives = 139/321 (43%), Gaps = 17/321 (5%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIISHIDQFFIRHQKKLE 144 + + + + + +A + L+ + + ++ ++ ++ I ++Q Sbjct: 3 YAIGVDLGGTNLRIAAVEERGTLLEKVTLGTQVQRGREYVVGQMTDAIRHVTTKYQ-DHG 61 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 +L I I +PG ID + G V P P+ + +E G V +++D +A M E Sbjct: 62 KLIGIGIGVPGFIDMDTGTVRESPNLPGWSNYPVHKDIESRLGTKVILENDANAAAMGEK 121 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 GA R D++ + VG G+I G L H + E+GH V P G C CGNHGC Sbjct: 122 WLGAGRDTDDMVMYTLGTGVGGGIIMAGRLWHGMNGMAGELGHHTVLPDGHICGCGNHGC 181 Query: 265 LETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALRGDLLAKDIITGVG 319 LE AS +++ +A+ + +S L + + + Q A++GD A++I VG Sbjct: 182 LEQYASATAVVRMAREAVANGLSDALANASRNDVEFSSKVIYQLAIQGDKAAQEIFNTVG 241 Query: 320 AHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL----------PAYSQ 369 +G +A MVN N +IG ++ A D + + +R+++ A + Sbjct: 242 HSIGIAVANMVNALNFPMYVIGGGVASAWDAFHNPMMEEVRKRSFIYRVTAPEAVAAGQK 301 Query: 370 HISVESTQFSNQGTMAGAALV 390 V + GAA + Sbjct: 302 RTIVTRALLGGDAGLFGAARL 322 >UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile RepID=C9XQA7_CLODC Length = 408 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 168/393 (42%), Gaps = 26/393 (6%) Query: 8 GHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE 67 I++ N V I + GP+SR ++ L A+I+ I +++++ LV E+ I Sbjct: 25 TDKYTIREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEIGIGN 84 Query: 68 AG-NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 + + GR + LV A LS+ I IF +L L ++ + D D Sbjct: 85 STHSGGRKPILLVFNKCAGISLSMDIGYDYIFSSLSYLDGTIINSKKL----TDIQVSKD 140 Query: 127 RIISHIDQFFIRHQKK----LERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 +I ID+ + ++ + + + GI T V P+Y ++ E+ L L Sbjct: 141 NVIQLIDEIINSYNISKIDTPYKVIGLTLAIHGI--TCENKVLFTPYY-NLNEIDLYSIL 197 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + P++I+++ + +AE F ++ + I G+G+I + L + Sbjct: 198 SKKYDFPIHIENEANLTALAENTFSTV--HNSLLSLSIHSGFGSGIIINNKLYSGRNGMS 255 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 EIGHT + P GK C CGN GCLE S + E SS+ + + D + Q Sbjct: 256 GEIGHTIIMPNGKLCPCGNRGCLEQYCSEKKVFEQL--------SSLENIPKIDSDIVKQ 307 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 + AK +I +++ + + + P+ I + S + + + D + Sbjct: 308 LYYEDNQNAKKVIHEFCSYLTIAINNAITTYAPEIIYLNSQIISDIPEILQITKDML--- 364 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 + ++++ I++E + ++ ++ G + V + Sbjct: 365 -VSSFNKGINIEISSLGSEASLYGGSAVNIKSF 396 >UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDL5_9FIRM Length = 380 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 80/376 (21%), Positives = 160/376 (42%), Gaps = 14/376 (3%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 + +I VSR +++R+ ++P S T+IV + E LV+++ + GR AV L Sbjct: 2 KMILDIIRDSREVSRSEIARMTGMSPTSATRIVGSLEECGLVRDM-AAVSNGVGRKAVML 60 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--DLPLLDRIISHIDQFF 136 VE A++ + L IS + L + + ++V + +++ + Sbjct: 61 DVEENAFYCIGLDISETNLKLCILNFGGQIVARGAAPAPGDSFQPEEVVEIFYRMYQRLA 120 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 I+ + +E++ +I G +D++ G V +P+G+ +E G+P Y+ +D+ Sbjct: 121 IQAKIPMEKVAAIGAGAVGTVDSKTGEVIF-GDLIRWSHVPIGQMIEARFGLPTYVDNDV 179 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP-YGK 255 + + +GA DV+ + VG VI G L+ +S EIGHT VD G+ Sbjct: 180 KCAIIGDCSTPPIKGADDVVLLSFGCGVGGAVIHRGRLVRGSINSAGEIGHTIVDYTDGR 239 Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDII 315 C CG GC + D I++ A +++ + A R + A+ ++ Sbjct: 240 LCSCGRRGCAAAYLTKDQIIQQAAKSCPGIS---------SLEEIMAAWERREPWAEALL 290 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 + ++ ++ NP+ +++G L + LF ++ + P + Sbjct: 291 DRISTYMAITVSNAACFLNPRNMILGGKLMNESPFLFDLVLEKYSAMMYPPLRGATTFIR 350 Query: 376 TQFSNQGTMAGAALVK 391 + T G A++ Sbjct: 351 SPLGTDATCVGGAMIA 366 >UniRef50_D1NUM3 Transcriptional repressor in the Rok family protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUM3_9BIFI Length = 417 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 97/404 (24%), Positives = 179/404 (44%), Gaps = 9/404 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + + + N V + GPVSR +++ +L PA+I+KI +++EA L++E Sbjct: 20 TSTQVSRATLSEHNRSRVLHHVYHHGPVSRATIAKALELTPAAISKITAKLIEAGLLEET 79 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD-L 122 + R R ++GL + A+H S++ +R + + + DL+ + + Sbjct: 80 GDMQGEGR-RRSIGLRMNKSAFHVASVKFARTLVCIGVYDLAGNQLSMQEITAVEHTQIP 138 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEAL 182 LD + S +++ + R+ +I + +PG G + ++ + + + Sbjct: 139 ETLDTVHSMLEKLLAK----DRRIIAIGMAVPGPYLRAVGRTAMVSSMQEWRAVNFIDEF 194 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 VPV+I+ D A ++ LFG R + ++ VG GVI ++ + Sbjct: 195 SHSLSVPVFIEQDARAGVLSYRLFGQGDADRHLAYYLLGEGVGLGVIDGDETINGELGAA 254 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 EIGH +D G+ C CGN GCLE S SI E + S + + ++L + Sbjct: 255 TEIGHVSIDVNGRSCECGNVGCLERYCSAVSIHEELNESGIVADSESMTHREA-CEALFR 313 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A G+ A ++ +G +VG ++N FNP +I++G +S D+L I + + Sbjct: 314 LAASGNSQAVAMVQRIGTYVGYGAVTIINTFNPSRIIVGDIVSGGGDLLLSAIRRVVDAR 373 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAALVKDAMY--NGSLLIRLL 404 LP + ++ S + GAA V + N S +R L Sbjct: 374 ILPELNARTTIVLADASADASTKGAAGVAVEHFLANPSAFVRGL 417 >UniRef50_D2BD51 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangineae RepID=D2BD51_STRRD Length = 401 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 91/381 (23%), Positives = 177/381 (46%), Gaps = 16/381 (4%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + QP ++ TN V R + + P SR D++ L A+++ +V ++++ LV+ Sbjct: 5 TTDPQPADFADVRATNLAVVLRFVREHAPCSRADIAASTGLNKATVSSLVADLIDRRLVR 64 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD- 120 E + E GRPA LV++ + + + ++ + DLS + ++ + + Sbjct: 65 ETGLTE-NRVGRPATMLVLDGSPYAAIGVEVNVDYVTAVAVDLSGERLLSWRRSFSGATI 123 Query: 121 -DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 + + + + + R K+ ++ +A+ +PG++ +G V P ++ L Sbjct: 124 TAAQAVATVAAIVRRVVNRMAKEERQVLGLAVGVPGLV-GTDGTVRIAPNL-GWRDADLC 181 Query: 180 EALEQHT---GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLH 236 L + G PV + +D + +AE FG G +++ + + VGAGV+ DG L Sbjct: 182 GDLTKALRDPGFPVQVDNDANLAALAEHRFGPRAGTANLVYLTGEIGVGAGVVLDGRLRR 241 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLT 296 G EIGH Q+DP G C CG GCLE +A + ++LE A L + + Sbjct: 242 GGQGYGGEIGHIQLDPLGAECRCGRLGCLEAVAGIGAVLEHAALSPAEV--------EIE 293 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 +D + + A D ++ VG ++G+ +A++ NL NP+ +++G A L P + Sbjct: 294 LDEVVRLARAADPRILAVLATVGHNLGKGVAVIANLLNPEVVILGGYYVPLAPWLLPAVE 353 Query: 357 DSIRQQALPAYSQHISVESTQ 377 +R + + + V ++ Sbjct: 354 AELRGRTIAPDAGGCQVVAST 374 >UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1Z3_9CLOT Length = 388 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 79/405 (19%), Positives = 168/405 (41%), Gaps = 22/405 (5%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + ++ +K+ N VY I V+ D++ + L+ ++T +V+EM +LV + Sbjct: 2 KGNNLSDVKKANRQVVYECIWSHKAVTMTDIAYMTHLSRPTVTSLVQEMTADNLVVKSGY 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSK-LVVEESQELALKDDLPL 124 + GR V A + + + + ++ +A+ +L + + D + Sbjct: 62 GTSNG-GRNPVLYHANAGAAYAMGIDLEFPKVRMAISNLECENICFSVRVYPRDSDKDQM 120 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + + +D RL + + +PG+ID + E + +P+G+ +++ Sbjct: 121 IRLLKQQMDDLIQDSGIDRSRLLGVGMGIPGVIDYKQNHSVLFERIEGWENVPIGDIIQR 180 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 + G PVYI +D++ + AE ++++ +VI +G + TDG L+ + Sbjct: 181 YVGKPVYICNDVNLLSWAERKAAHLEDVQNMLYIVIRSGIGMAIWTDGSLMQGEMGNSGR 240 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 IGH VD G C CG+ GCL S +++ + + + L A Sbjct: 241 IGHMTVDKNGLECKCGSRGCLGLYTSEKAMMRIYSELTGKEIKQAG--------DLVPLA 292 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAAD--ILFPVISDSIRQQ 362 GD A + G ++G + + NLF+ +++ +S + D + ++ + Sbjct: 293 ESGDKAALQVFETCGRYLGIGIVNVANLFDISEVV----VSASFDVSYILRNAQYALDVR 348 Query: 363 ALPAYSQHISVESTQFSNQG-TMAGAALVKDAMYNGSLLIRLLQG 406 + + + + + G + G LV D + + LL+G Sbjct: 349 KMNTIRREVKIREGLLAESGFGLGGCLLVLDKEH-----MSLLEG 388 >UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B8FTN1_DESHD Length = 406 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 87/389 (22%), Positives = 176/389 (45%), Gaps = 10/389 (2%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 + LI G +++ L+++A L ++ +++ + +A L+ E E+ GR V Sbjct: 20 KKILGLILHKGGMTKSQLAKVAGLKLTTLNRMMLPLEKADLILPTETGESTG-GRKPVIY 78 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFFI 137 V ++ + + ISR + L +L +L+ ++ ++ L+RI+ I + Sbjct: 79 DVNPRRYYVIGIDISRLYSQVVLTNLKMELIEKDRFDMDRNSSPQATLNRILDWIGRVME 138 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFY--EDVKEMPLGEALEQHTGVPVYIQHD 195 + + + I G +D ++GI+ + + + +PL +E+ TG+PV I + Sbjct: 139 KRG--HGYVIGVGIGTVGPLDRQSGIILNPENFEAQGWENIPLKAIVEERTGLPVIIDNG 196 Query: 196 ISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGK 255 + +AE +G+ +G + VI + + GVI+ G L+ + + H +D GK Sbjct: 197 ANGAVLAETRYGSGKGMKSVIYLNCGVGIRTGVISSGTLVRTINDADDTFAHMVIDVNGK 256 Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLH--GQPLTVDSLCQAALRGDLLAKD 313 C+CGN GC+E +S+ +I+E + Q H +P++ LC+ A D +A+ Sbjct: 257 PCHCGNQGCVERYSSIYAIMEALAEEMPQGKDRRNHKADRPVSYLELCREAEENDTIARQ 316 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 ++ +G LA + L NP +++ PL + + + V ++ +++ H+ Sbjct: 317 VLQNAAVRMGTGLANFIQLLNPGLVVLSGPLILHSQLFYEVCVEAAKRRRPWDKGGHLVF 376 Query: 374 -ESTQFSNQGTMAG-AALVKDAMYNGSLL 400 F G AALV + L Sbjct: 377 SRGGAFEENAISIGAAALVVEHYLEPETL 405 >UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID=C7PXL8_CATAD Length = 390 Score = 324 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 87/378 (23%), Positives = 171/378 (45%), Gaps = 14/378 (3%) Query: 24 LIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKE-AGNRGRPAVGLVVET 82 ++ GP+SR+DL+R ++ A++TK R L+ + EL+ + A GRP L + Sbjct: 22 MVLTEGPLSRVDLARRLGISSAAVTKAARPFLDDGYLHELDSERTAPGAGRPVSPLAITP 81 Query: 83 EAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKK 142 + + ++++ E+ + DL +++ ++L + +L + + +++ + Sbjct: 82 DREFVIGVKVTADEVIGVVADLKARIRNSAHRQLPDCEPATVLATLAALVEELLDADPEL 141 Query: 143 LERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMA 202 + + + + G +D G+V P +++ L + TG+ V +++D+ A T+A Sbjct: 142 RGKTRRMGVAVSGDVDRVRGVVRLSP-LLGWQDVDLAGPVGDATGLVVVVENDVKALTVA 200 Query: 203 EALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNH 262 E FG G D V + +G G++T G LL E+GH VD G C+CG Sbjct: 201 EHWFGDGVGTDDFTLVTVGAGIGCGIVTGGRLLSGAYGVAGEVGHVCVDASGPVCHCGAR 260 Query: 263 GCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHV 322 GC+E IA+ ++I+ A+L + LT + A G + + G + Sbjct: 261 GCVEAIAATEAIVGRARLLTGR--------DGLTFTEAAELARSGSPEVCALFSEAGTAI 312 Query: 323 GRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ-HISVESTQFSNQ 381 G + +VNL P++I++ A D+ I + A A ++ +++ F Sbjct: 313 GLAITAVVNLIGPERIVVSGEGLDAYDLFETEIRQAYATHAFGAAARCPLTIRPLPFEE- 371 Query: 382 GTMAGAALV-KDAMYNGS 398 GAA V ++ + Sbjct: 372 -WARGAAAVGIQTLFAPA 388 >UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces RepID=C9ZFY3_STRSW Length = 406 Score = 324 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 88/402 (21%), Positives = 165/402 (41%), Gaps = 20/402 (4%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 P + +++ N V ++ GP+SR ++ L A+++ +V E++ + L++E Sbjct: 14 GRRLPDNQQGMRRRNLARVLHAVNAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEE 73 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQ--ELALKD 120 L + G GRP L + + I + + DL ++ + + Sbjct: 74 LGPERPGRVGRPGSALALSGRGPAGIGAEIGVDHLAVCAVDLRGEVRARAVRQGTNRGRS 133 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMP--L 178 P++D + + Q + + +A+ +PG++ ++ V R P D + Sbjct: 134 PEPVVDDLTRLVRQVVAEAESEGLWPAGLAVAVPGLVASDARTVVRAPNL-DWHDTDLGA 192 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 G+PV + ++ + +AE G D + V + +G V+ DG LL Sbjct: 193 LLPGGLPGGLPVTVDNEANFGGLAELWLGDG-TPPDFLHVSAEIGIGGAVVVDGRLLRGT 251 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 E+GH V P G C CG GCLE A +++L A L + V+ Sbjct: 252 RGFAGELGHVPVRPEGPACACGGRGCLEQYAGEEAVLRAAGLEPAEHR----------VE 301 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 L + A GD + G G +G L VNL +P+ +++G L+ A L P + Sbjct: 302 FLAERAAAGDKEVHRALRGAGTALGIALTGAVNLLDPETVVLGGALAALAPWLLPSLERE 361 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSL 399 + ++ +V ++ + G + GAA V A+ + Sbjct: 362 LARRT---AGPACAVTVSRLGSDGPLLGAAHSVVRAVLDDPA 400 >UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TGR1_9MICO Length = 421 Score = 324 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 173/400 (43%), Gaps = 9/400 (2%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 Q++ N G + R + G SR L+ L+ A+ + ++ ++ E LV+E EI A Sbjct: 23 DQAQMRAANMGLILRQLQLHGGRSRAGLATETGLSKATTSSLIADLAERGLVREGEIHRA 82 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD--DLPLLD 126 G+ GRP + + ++ L L IS + + DL+ ++ E + + + +LD Sbjct: 83 GSVGRPGLTVNLDGRRVAGLGLEISIDYVAVTAVDLTGNVIRESITPMDVPELAVEVVLD 142 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 R+ + + + + PG+ID + GIV P + + L L + Sbjct: 143 RVAGIAQRMLESLRSAGHIVVGFTVAPPGVIDYDAGIVRFAPNL-GWRSVALAAGLSERI 201 Query: 187 G--VP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 G P +++++D +AE A +D++ + + VGAG+I +G L+ S Sbjct: 202 GPECPEIHLENDAKLAAVAEYGAYADSEVQDLVYLSGEVGVGAGIIAEGRLVRGWSGFSG 261 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 E+GH + P C CG GC E + + L LA + S ++ L + Sbjct: 262 EVGHLALGPSELECSCGRRGCWELVVGLHHFLRLAAPVGDVVHDSRRSMDD-RLEILRER 320 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A GD + + + + R L+++V++ NP++I++G + + L + ++ ++ Sbjct: 321 AASGDERTLEALAAIARDLIRGLSVLVDVLNPRRIVLGGYFAPFGEQLLAPVKSALDERR 380 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVK-DAMYNGSLLIR 402 + + V + G AL +A++ + Sbjct: 381 M-DAGSEVVVAVSALGLSAASRGGALAALEAVFEDPTTVP 419 >UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CF6 Length = 402 Score = 324 bits (831), Expect = 4e-87, Method: Composition-based stats. Identities = 95/405 (23%), Positives = 178/405 (43%), Gaps = 9/405 (2%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + ++ N +V + + GP+SR D++ A ++ A+ +V ++LE ++ Sbjct: 1 MSITRRTTR--DVRLGNRASVLYTLRREGPISRQDIAVRAGVSAATANNVVGQLLEEGVL 58 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSS--KLVVEESQELAL 118 E + GRPA + + + + + L L DL+ L+V+ Sbjct: 59 GEAGQMPSNG-GRPASLTGINPGYGAVVGVDLGETAVRLELFDLALQRTLLVDTPVRAGE 117 Query: 119 KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 + + + I + +++ ERL + + +PGI++ + P + PL Sbjct: 118 QGAEAIAELIAAGVERLLSESGVARERLLGLGVGVPGIVEDSGTSLVHAPSM-GWEGAPL 176 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 LEQ TG+P + + A AEA FGA+ +DV+ +I VGA ++ G L Sbjct: 177 AALLEQRTGLPATVSNGAKALGTAEAWFGAAGEGQDVVVCLIGTGVGASLLQQGTLYRGA 236 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 S+S E GHT + G C CG HGCLE +I+ ++ G+ ++ Sbjct: 237 SASAGEWGHTTIVLDGDTCRCGAHGCLEAYVGAPAIVRRW--AAVSGEATAGLGEEEVIE 294 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAADILFPVISD 357 L AA G A +++ ++G ++ +VNL NP +I+IG + +L P++ + Sbjct: 295 QLAVAAEAGGEQALEVLRETARYLGAGVSDLVNLVNPDRIVIGGWVGLRLGPLLLPLVRE 354 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIR 402 R++AL + ++++ GAA + + + R Sbjct: 355 QARRRALGPPFERLTLDLCHLGPDAVALGAATMIVDRFFAAGGQR 399 >UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q8E8_9ENTR Length = 377 Score = 323 bits (830), Expect = 5e-87, Method: Composition-based stats. Identities = 88/369 (23%), Positives = 169/369 (45%), Gaps = 12/369 (3%) Query: 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRP 74 + + RL+ +SR +++ +L+ A+I+ +++EML A LV+E I EA +GRP Sbjct: 3 NAHQQQIIRLLIASHGMSRTAIAQKMKLSKAAISTLIKEMLNAGLVEES-IPEATGQGRP 61 Query: 75 AVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQ 134 +V L + ++ ++L + I L L D+ + + L L D L I I Sbjct: 62 SVLLKMRADSAYFLGASLLGEAITLVLIDMHGRTLATRVLPLNL-DPHQLTRAIADAIPS 120 Query: 135 FFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQH 194 + ++L + +TL G +D + + K++PL + L+ TG+ V +++ Sbjct: 121 LVTQQGISPDQLIGLGVTLSGFVDEHQAVCVQSA-LLGWKDVPLADMLKAQTGLEVSLEN 179 Query: 195 DISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYG 254 D A ++E +FG ++ R+ + +G+ G L EI H ++P G Sbjct: 180 DAKALAVSEKIFGLAKKVRNFTLISHSDGIGSAHFFQGQLHRGAHGGAGEIAHCTIEPGG 239 Query: 255 KRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDI 314 + C CG GCL+T+AS+ +I E + + + T+ L A++G A I Sbjct: 240 RPCRCGKRGCLDTLASLTAIREHMRDKAIAAQ---------TLPELETQAIKGSSAAIAI 290 Query: 315 ITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVE 374 + G +G +A +V + +P+ I+I +L V+ +I LP+ + Sbjct: 291 LHQAGNALGLAIANIVQMNDPELIVIAHHPGAFDGLLKTVVMQAIDANVLPSIMGKTPIS 350 Query: 375 STQFSNQGT 383 + +++ Sbjct: 351 TIVLNDESW 359 >UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6 Tax=Sphingobacterium spiritivorum RepID=C2FZL1_9SPHI Length = 403 Score = 323 bits (830), Expect = 6e-87, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 167/369 (45%), Gaps = 12/369 (3%) Query: 32 SRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETE-AWHYLSL 90 + +LS L + SI+KIV E+LE L+ E + + GR A+ + + + L++ Sbjct: 25 TIAELSGLTNKSIPSISKIVNELLEDKLLIEDGLAPSTG-GRRAIHYALNAKLNCYILTV 83 Query: 91 RISRGEIFLALRDLSSKLVV-EESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSI 149 I + + + DL +K V + E L I+S I++ +H + + I Sbjct: 84 AIDQHYTSVIVYDLHNKEVTPVHTIENHLDHPEEAFSNIVSLINELLTKHHLSADNILGI 143 Query: 150 AITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGAS 209 +++PG +D +G ++D + + + E+ +P +I++D +A +AE FG + Sbjct: 144 GVSMPGFVDNVSGT---NGSFKDFQLFNIKKEFERVFAIPTFIENDSTAIAIAEQNFGKA 200 Query: 210 RGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIA 269 + + + + VG G+I D L S E H + K C CG GCLE A Sbjct: 201 KEISHALIINVGWGVGLGIIVDNKLFRGFSGYAGEFSHIPLSKSKKMCSCGKTGCLEVEA 260 Query: 270 SVDSILELAQLRLNQSMSSMLHGQPL-----TVDSLCQAALRGDLLAKDIITGVGAHVGR 324 S+ + + + RL S++ + L AAL GD LA + +G+ Sbjct: 261 SLSAAVAHLEERLATGEKSVIQYEDSQNQLQKAQLLINAALGGDQLAISALNKSAYMLGK 320 Query: 325 ILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTM 384 +A ++++ NPQKI+I ++A IL P I +I + +P S +E + N + Sbjct: 321 GIATLIHIMNPQKIIISGRGAEAGKILMPQIQTAIHEFCIPKISNKTVLEISDMKN-AQL 379 Query: 385 AGAALVKDA 393 G A + Sbjct: 380 IGTASIVFE 388 >UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillus sp. B14905 RepID=A3I7X3_9BACI Length = 383 Score = 323 bits (830), Expect = 6e-87, Method: Composition-based stats. Identities = 84/391 (21%), Positives = 168/391 (42%), Gaps = 13/391 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + Q+++ N V I Q+ P+SRI LS+ +++P +IT+IV+E+ + E + Sbjct: 2 KKQDQVQMRRQNKYIVLDAIRQMAPISRIQLSKYTKMSPTTITRIVQELEAEGFILE-GV 60 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPL 124 E GR + + +A + + + I I L + D KL+ + + + Sbjct: 61 SEETAIGRRPTLIHMREDALYTIGIEIDCFTIRLGILDFLGKLIAFQEIKCSIKHRYEEA 120 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + + + I +Q E+L I I +PG+I+ E GI+ + + +GE L Sbjct: 121 IHLLKNSIATIMSEYQIAQEKLLGIGIGVPGVINNEEGIIVSSEQLK-WENCRIGEDLNG 179 Query: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 V + +++ +AE + + I V + VGA ++ +G + + E Sbjct: 180 VFDCEVIVDNELKMQIIAEIGDIYTPLYSNCILVGMGTGVGASILLNGEVYRGIQNKAGE 239 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 I H ++P+G+ C+CG GCL S ++L L +++ + Q Sbjct: 240 ISHITINPFGEMCHCGKRGCLSMYISEMTLLNRTPKNLTIQ----------SIEEVLQCV 289 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 RG+ A DI V ++ + +V L+ P+ +++ + + ++S+ +Q Sbjct: 290 DRGEQWAVDIQQDVATYLAIAINNLVCLYEPEAVIVSGEIIEHNVTFQKLLSEKCKQYIW 349 Query: 365 PAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 H ++ + +G + GAAL Sbjct: 350 KELQPHFVLQFSNQLKEGVVKGAALQAQKQL 380 >UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A2C4_ENTGA Length = 388 Score = 323 bits (830), Expect = 7e-87, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 155/375 (41%), Gaps = 18/375 (4%) Query: 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN-RG 72 + N LI +SR DLS + L A+ + IV++++E LV E+ E+ N G Sbjct: 13 RTKNESLCLELIMNNHNLSRADLSTMTGLTKATTSAIVKKLIEDQLVIEIGTGESSNVGG 72 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R + L ++ +S+ I I L L + V ++ D+ + D Sbjct: 73 RKPIILQYNGKSGLSISIDIGYNYINGLLAFLDGEEVQSIQKKPIHLDEHTIKDHFTELF 132 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 192 + F + + + I + G + G V P ++ ++P + E+ PVY+ Sbjct: 133 NHFKKSLPETYYGIIGVVIAVHGPV--HEGNVIFTPH-HELAQIPFRDIAEELVDYPVYL 189 Query: 193 QHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDP 252 +++ + + E F + + +I + + +GAG++ +G L + EIGH V Sbjct: 190 ENEANLSALGEYTFSS--KSSSLICINMHSGIGAGIVQNGILQTGTNGLAGEIGHQIVVL 247 Query: 253 YGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAK 312 G C CGNHGCLE A A + +++ + L + D A Sbjct: 248 DGIECPCGNHGCLEMYA--------ANKVCFEKFANIKSMDYVNAIILREYYQNNDPDAI 299 Query: 313 DIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHIS 372 + ++ + +V ++P+ I++ S L + ++ S+ + +S+ + Sbjct: 300 HVTEENVHYLSAGINNLVVHYDPEVIILNSSLYHEIPDMIGQLTKSLHSR----FSEKVI 355 Query: 373 VESTQFSNQGTMAGA 387 V S+ + T+ G Sbjct: 356 VRSSLLDEKATLLGG 370 >UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PQN5_9ACTO Length = 402 Score = 323 bits (828), Expect = 9e-87, Method: Composition-based stats. Identities = 91/390 (23%), Positives = 155/390 (39%), Gaps = 21/390 (5%) Query: 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG-------R 73 V I GP+ R+ ++R L+ A++TK V ++EA V + + G R Sbjct: 19 VLTRILTQGPIPRVQIARRTGLSQAAVTKAVAPLIEAGFVTDEPVAPTEGSGESQLGIGR 78 Query: 74 PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHID 133 P L V ++ + ++++ + DL++ + L ++ RI+ Sbjct: 79 PVSPLTVLADSVSVIGVKVTPTGLIGVTTDLTAGIRTVRHSPLRDSSTETVIPRIVELAR 138 Query: 134 QF---FIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + L I + + G +D +G+V PF +E+PL L + G PV Sbjct: 139 ELMDFLDDQANGAGPLIGIGVAVSGDVDAAHGVVRDSPFM-GWREVPLAATLTEELGAPV 197 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 + +D+ A T+AE FG A V I VG G+ +G ++ E+GH + Sbjct: 198 VVTNDVRALTVAEHWFGVGVDADSFAVVTIGSGVGCGLYLNGEVVSGAYGVSGELGHLPL 257 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 P C CG GC+ET+AS D+IL + + L + + A GD Sbjct: 258 APGELICTCGRRGCVETVASSDAILARTRETTGRP--------ELDLAGAIELAHAGDEH 309 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 A++ G +G LA MVNL P+ ++I D+ + + A + Sbjct: 310 AREAFDQAGEVIGSALAAMVNLVGPELVVIAGEGVADYDLYEQRMRRAFSAHAF-GAAGD 368 Query: 371 ISVESTQFSNQGTMAGAAL-VKDAMYNGSL 399 + + GAA V + G Sbjct: 369 CRLMLRSHTFDDWARGAAATVIRSYVRGEP 398 >UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter RepID=B0K0J6_THEPX Length = 381 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 70/388 (18%), Positives = 160/388 (41%), Gaps = 23/388 (5%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + G IK N V +I ++ P+SRI++S++ +++ ++I+ IV E++E LV Sbjct: 1 MKDYTKGTSGLIKNINKANVLDVIKKMQPISRIEVSKVLKMSKSTISAIVDELIEEGLVI 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E E G GR + L +A + + + L +L K++ + E +K Sbjct: 61 ENGYGEKGTVGRKPIQLSFNPDARFVIGISVESTNSIGILTNLEGKILKKIKWETGIK-- 118 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + I+ I + + + + D + GIV P + L + Sbjct: 119 EQAFNGIVKGIKELAEEDKNIIGIGIGLPGIT----DIQKGIV-DAPGLK-WSNFDLKKR 172 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L + +Y+ + ++ + E G R + + + I + +G+G+ +G LL S + Sbjct: 173 LSEIFNYNIYVDNSVNYAALGERWIGCCREIENFVLINIGNGIGSGIYVNGTLLRGNSYA 232 Query: 242 LVEIGHTQVDPY--GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 E+G+ + + ++G E AS+ +++E L T++ Sbjct: 233 AGEVGYMAIGEDAFERVYSYEDYGYFERKASLSALVESVSKSLPYVK---------TMEG 283 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 + + + + ++ ++ +A +V++ NP+ I+IG + + + + + Sbjct: 284 VVKEYKKQNPACVQAVSQFIKNLSMGIANIVSILNPEVIIIGGDILNYEIDIRQELKEKV 343 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGA 387 ++ +P ++ Q + GA Sbjct: 344 -KRIVPF---DFDIKVAQLGEDASAIGA 367 >UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK90_MOOTA Length = 315 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 3/308 (0%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFFIRHQKKLE 144 L + + I L D++ K++ + A + +L RI + L Sbjct: 2 CLLGIDLGGTSIKAGLVDINGKILKKGQVPTGAGEGTTAVLKRIKNLARDLAGEQGLALG 61 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 L I I +PG +D G+VH P ++ L + L +PV I++D + E Sbjct: 62 ELEGIGIGIPGSVDVARGLVHLAPNLF-WRDFSLRDELAALLDLPVAIENDAHVAALGEM 120 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 GA RG ++ V I +G+G+I DG + H E+GH ++ G++C+CG HGC Sbjct: 121 WQGAGRGYTSLLMVTIGTGIGSGLIIDGRVHHGLFGYGAEMGHIKMVCDGRQCHCGGHGC 180 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHGQP-LTVDSLCQAALRGDLLAKDIITGVGAHVG 323 LET+AS ++++ + L SML +P L + AA GD LA +I ++G Sbjct: 181 LETLASATAMVKSFREYLAAGYPSMLSDRPELGAKEILAAAAGGDELAGRVIDEAACYLG 240 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 LA V L P+ I+IG ++A +++ I + + + V N Sbjct: 241 TALANAVLLVGPEAIIIGGGPAQAGEVILDPIRKHLAAAMGTWQLKQVPVLQAALGNDAG 300 Query: 384 MAGAALVK 391 + GAA + Sbjct: 301 IIGAAYLA 308 >UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DT25_9BACL Length = 389 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 84/401 (20%), Positives = 167/401 (41%), Gaps = 17/401 (4%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 +++ N + + + +SR DL R L+ +I++IV ++L ++EL Sbjct: 1 MPMKASPPLVRRLNERRIMNALREHKRLSRADLERQLNLSAPTISRIVEKLLRDGWIREL 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E+ GR + L + E L + + RG + ++ ++L + + Sbjct: 61 YPGESQTAGRKPILLDINPEGSGALGVELGRGCTRIVYTNMLAELRASRTISRSATGP-- 118 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFY-EDVKEMPLGEAL 182 + + + F + ERL + + PG +V P + + + L Sbjct: 119 --NDLAEMVKSFLVEESLTEERLIGLGVAAPGACFPNRDMVVPAPDLGTEWSKSEAAQQL 176 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 E+ GVPV++ +D +A +AE FG ++ A+ V V+ D +GAG+ G + + Sbjct: 177 ERELGVPVHLANDANAAVLAETWFGTAQHAQHVAFVLADVGLGAGLAVAGSIYEGAARKA 236 Query: 243 VEIGHTQVDPY-GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E HT V+ RC G+ GC+E+ AS +I + T++ + Sbjct: 237 GEFSHTIVNFESDVRCDDGHAGCVESQASGKAIFARLKAVREVHAHE-------TIEYVV 289 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + A G +I ++ +A +V F+P+ +++G + A+ I + + + Sbjct: 290 KRACSGVEPDASVIDRAFRYLAAGIANLVRAFDPEVVVLGGRMVLASQIAYERLRGYVHD 349 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLI 401 P +H + +F GAA LV +Y+ + L+ Sbjct: 350 CLRP---EHKLITCARFGLDAVAMGAASLVLQTVYDHTQLV 387 >UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q516_CATAD Length = 404 Score = 321 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 91/393 (23%), Positives = 162/393 (41%), Gaps = 7/393 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + + +++ + + I VSR +L+RLA ++ A+++ +V +++ LV Sbjct: 1 MIQAGAQTTRDLRRRSRATLLSCIYLGRAVSRPELARLAGMSSAAVSNVVSDLISDGLVA 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-- 119 E ++ GRP L + + + I I + L D + + + E+ + Sbjct: 61 EAGSVDSNG-GRPRTMLAARPGFGYAVGVDIGETHIHVVLFDWTLSTLATSTHEIRVGRL 119 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 D ++ ++S + ERL I I +PG + V P +PLG Sbjct: 120 DPDVVVRLVVSGVRSLLDSTGVPHERLLGIGIGVPGAVQEGERGVVHAPTL-GWSGVPLG 178 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 +AL P+ I + AEA GA R AR + + VGA + L +GS Sbjct: 179 DALRAELDAPILIDNCARTLGQAEAWRGAGRDARRAVVALWGVGVGAAIAEGSSLAESGS 238 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 SS E GH ++ G+ C CG+HGCLE +IL+ L G + Sbjct: 239 SSTSEWGHAVIEARGRACRCGSHGCLEAYVGATAILDAY-LAHPAGKPFTSDGTEAKMAE 297 Query: 300 LCQAALRG-DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSK-AADILFPVISD 357 L A G D A ++G + ++N+ NP ++++ + + +L P I + Sbjct: 298 LAARATTGADEAATATFDEAAEYLGIGVGNLINMINPDQVILAGWVGEQLGPLLMPAIRE 357 Query: 358 SIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 + R+ ALP ++ + GAA + Sbjct: 358 AARRHALPYLFDQTRIDVGELGPGAVALGAATL 390 >UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDS2_CLOTS Length = 311 Score = 321 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 140/310 (45%), Gaps = 8/310 (2%) Query: 88 LSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFFIRHQKKLERL 146 + + + I + L D + K++ S+ + + I + R + + Sbjct: 3 IGVDVGGTNIAVGLVDENGKIIATGSRPAEPKRGYAAIAKDIAEISLELIKRCGLDISDV 62 Query: 147 TSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALF 206 S+ I +PG+ D E GIV R ++PL + + ++ +P+ + +D + +AE +F Sbjct: 63 ESMGIGVPGVADNEKGIVLRAVNLY-WTKVPLVKEIHKYIDIPINMDNDANVAALAEGIF 121 Query: 207 GASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLE 266 GA +G + + + VG+G I +G + + E+GH + G C CG GC E Sbjct: 122 GAGKGTNSSVTITLGTGVGSGFILNGKVFNGAHHFAPELGHIVLGDNGVMCNCGKIGCFE 181 Query: 267 TIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLLAKDIITGVGA 320 T AS +++ + + + +S++ + +T ++ AA + D A I Sbjct: 182 TYASATALIREGKKAVMKDSNSLILKLAGGEIESITAKNVIDAAKQFDEAAMMIFNDYVK 241 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSN 380 ++ + ++N+ +P+ I+IG ++ A D L + + + + L + ++ + N Sbjct: 242 YLAMGIVNIINILDPEVIIIGGGVANAGDFLLKPLKEEVSKNILFKDLPYADIKKAELGN 301 Query: 381 QGTMAGAALV 390 + GA+++ Sbjct: 302 DAGIIGASIL 311 >UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57B53 Length = 381 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 78/383 (20%), Positives = 164/383 (42%), Gaps = 17/383 (4%) Query: 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLV 79 + L+ SR+DL+R L ++++ + ++ A ++ E + GR L Sbjct: 8 RLLWLVAHGHATSRMDLARALGLPQSTVSVRTQALMSAGVLSESGEGRSAG-GRRPKLLT 66 Query: 80 VETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFFIR 138 V E H + + + + D++ +L+ + L ++ L+ + + + Sbjct: 67 VNAEFGHVWAADVGSRHVRIGALDIAGRLLEVHERPLDISQEPRELVAGLAAAVRDVMAG 126 Query: 139 HQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISA 198 R + + PG +D + G + + + AL +H +PV + +D + Sbjct: 127 AD-CPGRALGLGVAFPGPVDVDAGTITLPSRMPGWRGFAVRAALAEHFELPVVVDNDANM 185 Query: 199 WTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV-DPYGKRC 257 + E++ GA R ++ V +G+G++ G L + +I H +V + C Sbjct: 186 LALGESVAGAPG--RTLLVVKAGTGIGSGIVLGGELYRGRAGVAGDISHVRVPAAEDQPC 243 Query: 258 YCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITG 317 CGN GCLE +AS +++ Q + + T + A G A + Sbjct: 244 TCGNRGCLEVVASGAALVGQLQAQGLKLE---------TTAQVMATAEDGHPEATTAVRR 294 Query: 318 VGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ 377 G +G +LA +VN NP ++L+G LS ++ + ++ ++ LP ++ + ++ + Sbjct: 295 AGLRLGEVLATVVNFSNPDEVLLGGALS-GSEAFVAAVRGALYERCLPLATRELRIDRVR 353 Query: 378 FSNQGTMAGA-ALVKDAMYNGSL 399 F + GA AL DA++ ++ Sbjct: 354 FGADAGLYGAGALALDAVFEQAI 376 >UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QHP4_CATAD Length = 395 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 168/383 (43%), Gaps = 17/383 (4%) Query: 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI---KEAGNR 71 + + AV RL+ + G +SR D++R L+ ++++ I+ ++ LV EL+ G Sbjct: 11 ERSRLAVVRLLRERGTMSRADIARSVGLSRSTVSGIIAALVADDLVVELDAKLAPAGGGA 70 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIIS 130 GRP +++ + + + + + + +++ + + +S L + D D Sbjct: 71 GRPGAAVMLNPASGEAIGVDFGYRHVHVIIANVAHAVRIAKSVRLPVGYDPAQGFDVASD 130 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYED-VKEMPLGEALEQHTGVP 189 I R+ + +++PG DT+ G+ +P+ L +P Sbjct: 131 LIRTAIDEAGTDPSRILGVGVSVPGPFDTKRGVP--SSGMPSRWAGIPVATELAARLNLP 188 Query: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 V D +AE +GA+RG + + + + +G +++G L + EIGH Sbjct: 189 VLADGDTRLGALAERRWGAARGCDEFVYLKLHGGIGGAFVSNGQLARGINGGAGEIGHLV 248 Query: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDL 309 VD G C CGN GCLET + ++ + +G LT+ ++ A +GD Sbjct: 249 VDATGPLCRCGNRGCLETFVGLPVVMRALEPA---------YGDRLTLRNVITMAWQGDR 299 Query: 310 LAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQ 369 ++ G GR + ++ N+ NPQ ++IG LS A ++L + ++ +LP Sbjct: 300 GCIRALSDAGTMAGRAVGMLGNILNPQSVIIGGALSAAGELLMGPLREAAATASLPLAGD 359 Query: 370 HISVESTQFSNQGTMAGA-ALVK 391 ++++ Q GA A+V Sbjct: 360 AMTLQVGSLGPQACALGAVAMVL 382 >UniRef50_C6LD35 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LD35_9FIRM Length = 459 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 104/421 (24%), Positives = 178/421 (42%), Gaps = 29/421 (6%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M ++ KQ N G + +LI +RI+LS+ L ++T IV E ++ LV Sbjct: 42 MARMTGKNNLTS-KQFNRGLLLKLIATQNCRTRIELSKATGLTKMTVTNIVSEFIQQGLV 100 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E E + GR + L + +A + L I R I L LS + + ES Sbjct: 101 AEREEVQTEVCGRNPILLEISGKAPKVIGLLIFRDRIEAVLCTLSMQKLASESIHFDSLT 160 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L S ID+ + + + I + G +D G++ P + ++ +P+ E Sbjct: 161 KEQLYAHCFSVIDRLLEK----EKNIFGIGVAAIGPVDIWKGVILNPPRFYGIQNVPVRE 216 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 ALE+ +PV+ HD ++ +AE LFG R +D + V I + +G+G+++ G + H+ Sbjct: 217 ALEKRYALPVFFDHDNNSAALAELLFGIGRNVQDFLFVGISNGIGSGIVSGGRVYHSHRG 276 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 EIGH +D G C CGN GCLE A+ +LE + ++ S P S Sbjct: 277 LPPEIGHISIDRRGPLCACGNRGCLELYANTHIVLEKLRAAKGRAFSGERCAGPGDALSA 336 Query: 301 -CQAALRGDLLA----------------------KDIITGVGAHVGRILAIMVNLFNPQK 337 A G A ++I + V L VN+ +P+ Sbjct: 337 NFCRAEEGASFADFCREEGASFADFCRAPQTAETEEIFEEMLQDVSAALVTSVNILHPEM 396 Query: 338 ILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAAL-VKDAMYN 396 I++G + L + + + ++ + + + V+ F + + GAA D M+ Sbjct: 397 IVLGHDCIDWDERLVGRLEELVNERKVVHDQRPLPVKKAYFGKEAQLIGAACNAVDQMFR 456 Query: 397 G 397 G Sbjct: 457 G 457 >UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O82844_TETHA Length = 386 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 169/396 (42%), Gaps = 26/396 (6%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + P H + + I +SR L+++ L +S++ I + +L+ ++ Sbjct: 1 MQTYNPTHQS------EPLILKNIIDYQEISRAKLTKITNLTKSSVSDITKTLLDKDIIY 54 Query: 62 ELEIKEAG-NRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E ++ + + GR + L + + + I R I L ++ L+ E+S + Sbjct: 55 ESKVGNSTNSGGRRPIYLKFNENSALVIGIEIGRNYIKGGLSYINGSLIREKSYTQITIN 114 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 ++D + I Q K + + + + G I + +P Y D+ E+ L E Sbjct: 115 RYNIIDTLSQIIQQLCSDLPKSSYGIIGVGVAIHGSI--YKNKITFVP-YSDMDEIELQE 171 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L HT +PV++ ++ +A + E F + + +I + I +GAG+I G L + Sbjct: 172 KLSSHTHLPVFLINEANASALGEYTFTS--NSESLISISIQDGIGAGIIEKGILYSGKNG 229 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGHT + P G+ C CGNHGCLE AS + + + + + Sbjct: 230 NAGEIGHTTLYPDGRLCPCGNHGCLEQYASTTILYKEISKLKE--------VEYCDLHQV 281 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 D ++ + + +V++++P+ ++I + L + L VI + Sbjct: 282 IN-YWHNDEEVIQLLKNNAKLISIGVNNIVSMYDPETVVINNELYREIPDLINVIEKHLT 340 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGA-ALVKDAMY 395 ++ ++++ +++T ++ T+ G +LV Sbjct: 341 RR----NNRNVFIKNTSLEDKTTLYGCLSLVIRQFL 372 >UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C9NFC9_9ACTO Length = 418 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 153/383 (39%), Gaps = 23/383 (6%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPV---SRIDLSRLAQLAPASITKIVREMLEA 57 + D +++ N V R + G +R +S L A+++ +V ++L++ Sbjct: 5 LTPLGSKADKDTVRRHNLSLVLRAVRDEGEAGEATRAGVSARVGLTRAAVSSLVEQLLDS 64 Query: 58 HLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA 117 V E +G GRP L V L + I+ + + + DL+ V +++ L Sbjct: 65 GFVTESGKTFSGQAGRPGTALKVARTGPAGLGVEINIDYVSVCVVDLAGTGRVRQTEHLD 124 Query: 118 LKD--DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE 175 + +L R + +++ A+ LPG++ G V + P + Sbjct: 125 NRGAPPGEVLARAAGIAARTLDSAREQDLCPVGTALALPGLV--SGGSVRQAPNL-GWNQ 181 Query: 176 MPLGEALEQHTG--------VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAG 227 + + + +PV +++ + +AE FG R + + + VG Sbjct: 182 VAAEDLFGEALAGLRPGTAALPVRSENEANLAALAELWFGGLGTVRSFLYLTGEIGVGGA 241 Query: 228 VITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMS 287 ++ DG LL EIGH VDP G C CG+ GCLE A ++L A + + Sbjct: 242 LVLDGELLRGAHGFAGEIGHVVVDPAGPECRCGSRGCLEQYAGQSALLRAAGIGEGAGGA 301 Query: 288 SMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA 347 + + L + A GD +A + G +G++L+ VNLF+P +++G Sbjct: 302 AGVM-------ELERRAQAGDPVALAAVADAGRMLGQVLSGAVNLFDPDAVVLGGIYRGL 354 Query: 348 ADILFPVISDSIRQQALPAYSQH 370 L P + + + + Sbjct: 355 MPWLAPPADEELTGRVVSGLWSR 377 >UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LTZ1_ACIC1 Length = 436 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 97/397 (24%), Positives = 169/397 (42%), Gaps = 15/397 (3%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 D I+Q N + R + G +SR DL+ L ++I +V E+ +LV E Sbjct: 1 MPGVATQDVIRQRNLSVLLRRLHVDGALSRADLTAAMGLNRSTIKALVEELAAMNLVTET 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL--ALKDD 121 A GRP+ + V + + L+ + + +A L ++ L Sbjct: 61 IPGTAQRAGRPSHVVAVRCDTAYVLAANVGVDTVTVAAFGLGGHILARRDYPLGGPGASA 120 Query: 122 LPLLDRIISHIDQFFIRHQKKLER-LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 ++ R+ + ++ +R L I + +PG++ E+G V P + +P Sbjct: 121 DAVIARLAAECAAIRSALERSPDRRLVGIGVAIPGMVHAEDGRVEFAPNLM-WRNVPFAA 179 Query: 181 ALEQHTGV--PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 L V P+ I +D +AE + GA RG ++ + + +G G+I DG L+ Sbjct: 180 PLSAALDVDVPIRIGNDGDLGALAEQVRGAGRGVAHLVYIAGEVGIGGGIIVDGRLVLGR 239 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 EIGH V P G+ C CG GCLET ++IL + Sbjct: 240 HGFAGEIGHVMVHPDGRPCRCGGRGCLETEVGEEAILTACGRDPRAGRQATH-------- 291 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + +AA RGD A+D + + +GR L ++N+F+P+ ++IG PLS + PVI + Sbjct: 292 EVFEAARRGDRRAQDGLRHIAVWLGRGLGSIINVFDPEVVIIGGPLSSLLPLAEPVIREE 351 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMY 395 + LP + + + + ++ GAA + Sbjct: 352 LAASTLP-HRRSVQIRPPGLGEDSSLFGAAELAFERL 387 >UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BCC4_9GAMM Length = 394 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 178/392 (45%), Gaps = 6/392 (1%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE--L 63 + +QI+ N + + GP++R+DL + +L+PA++T I E+ + + E Sbjct: 2 KKTDTEQIRLANKKQIIHYLRVHGPIARVDLGQALKLSPATVTAITSELQQEARLIEHPA 61 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK--DD 121 ++ RGRP V + + +A+H L L++S E+ + L + ++ E +L + + Sbjct: 62 TTEKTNTRGRPRVLIDLAPDAFHVLGLKLSINELKMHLGNHKGQVSDEMVIDLDTRALSE 121 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 L D I S + +F +R ++ I + G+++ NG + P V+++PL Sbjct: 122 EGLFDAIASAVRRFNASVPA-HKRPKALGIAVQGVVNGLNGEIIWSPALA-VRKVPLKHE 179 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LEQ +PV I +D + TMA + D +++ + +G G++ +G L + Sbjct: 180 LEQRIQLPVTIANDANCLTMAIRHQRRYQSLTDFAVIMLGYGIGMGMVINGELYLGHHGA 239 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E GH++ P G +C CG GC+E ++ A S + LH ++ L Sbjct: 240 AAEFGHSKYYPEGAQCLCGKRGCIEAYVGDYALYRDASALFPLSWDNSLHPTEDSMQVLV 299 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 A +D+ G +G ++ ++ L + +KI+I P S+A ++ + ++ Sbjct: 300 NKAESDSKELRDLFQRAGRVLGHGISNLIALLSLEKIIISGPGSRAYHLMEAGLMTNLED 359 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDA 393 + ++E + T+ G ++ Sbjct: 360 SLVSDLIAETTIEHAAWDEDMTIKGIVVLALE 391 >UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AFQ9_9ACTN Length = 405 Score = 320 bits (822), Expect = 5e-86, Method: Composition-based stats. Identities = 91/401 (22%), Positives = 172/401 (42%), Gaps = 16/401 (3%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 + P + ++Q N R + G SR ++R + L+ AS+T ++ E++ LV E Sbjct: 8 TTSAPATVSDVRQRNRSQALRSVILTGETSRAAIARESGLSVASVTNLISELISEGLVME 67 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD- 121 + GRP L ++L + + + L DLS + E + + Sbjct: 68 AGSVASSG-GRPVTLLAPNPSGAYFLGADVGERGVAVELFDLSMTRIDREFRGGREGEPI 126 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGII--DTENGIVHRMPFYEDVKEMPLG 179 + + ++ R+ +R+ I + LPGI+ D E V +P+ Sbjct: 127 EAIAADLDEALNALRERNPAAWDRMIGIGLGLPGIVESDAEGRQVLYAQSL-GWSPIPVA 185 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 + + +PV+ ++ MAE GA+RG + + V++ VG ++++G L + Sbjct: 186 DLVSH--DIPVFAENGAKTQAMAELWDGAARGVNEALVVLLGRGVGLAIVSNGELARGLN 243 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 SS E GH ++ G+ C CG GC+E D+ILEL + S + Sbjct: 244 SSAGEWGHVKIVRNGRLCRCGGRGCVEAYLGADAILELWREAGGVFDGSGWG-------A 296 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLS-KAADILFPVISDS 358 + Q D +A ++ + +G L +VNL NP++++IG + + + L + ++ Sbjct: 297 VGQLLESHDPVAVGVVDELIETLGSALGGLVNLTNPERVIIGGWVGLRLMEALASRMEEA 356 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALV-KDAMYNGS 398 R +AL S+ + F GAA++ +A+ Sbjct: 357 TRAEALARPGGQFSLHACSFGGDTVALGAAIMPLEALLAAP 397 >UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus RepID=C8ZX67_ENTGA Length = 388 Score = 319 bits (820), Expect = 8e-86, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 176/384 (45%), Gaps = 18/384 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN-R 71 I++ N AV + I +SR ++S L L AS+++I+++++E V+E+ I ++ + Sbjct: 8 IREQNEAAVLKTIIDNEHISRAEVSNLTNLNKASVSQIMKKLIETDFVKEVGIGDSTSIG 67 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 GR + L ++ ++ I + L ++ + + ++ L + I S Sbjct: 68 GRKPIQLQFNHQSSLAITFDIGYNYVNGMLSYINGQRIAILEKQDILITKDNVFTTIDSI 127 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 + +F + L I + + GI++ EN + P+Y D++ + L L Q VY Sbjct: 128 MAEFTPKMPPTTHGLVGICLAIHGIVNQEN--ITFTPYY-DLEHIDLVSPLSQKYHTAVY 184 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 I+++ + + E F + + +++ V I +G G+I +G L + E+GH+ + Sbjct: 185 IENEANLTALGEYCFSS--DSTNLLSVSIHSGIGVGIIVNGRLQTGTHGTAGEVGHSTLF 242 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 P+G C CGN GCLE AS + + S + + D +A G+ A Sbjct: 243 PHGNLCPCGNRGCLEQYASNKVLFDTY--------SHYTKKELVNSDIFAKAIRSGEKSA 294 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 ++ + L ++ F+P+++ I S + + P ++ ++Q+ ++Q+ Sbjct: 295 LELAQQNVEFLSIGLNNVITFFDPEEVYINSSVYRK----IPQLTKDLQQKLTSQFTQNT 350 Query: 372 SVESTQFSNQGTMAGAALVKDAMY 395 +++++ Q + G ++ + Sbjct: 351 KIKNSRLGEQAPLFGGNVLIAKNF 374 >UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepID=B7GQ98_BIFLI Length = 404 Score = 319 bits (820), Expect = 9e-86, Method: Composition-based stats. Identities = 84/365 (23%), Positives = 161/365 (44%), Gaps = 5/365 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + ++N + + + G SR +++ +L PA+ITKI ++EA +++ Sbjct: 3 TNTAHATSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMIE 62 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 E E R ++GL ++T + + ++ +R + + + DL + E+ + Sbjct: 63 ETGDLEGSKN-RRSIGLKLDTTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPTVYDN- 120 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 ++ I I Q + + +I + +PG G + + +++ + Sbjct: 121 --TINDTIVTIHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGRTAVVSSMQGWRKINFIDE 178 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGAR-DVIQVVIDHNVGAGVITDGHLLHAGSS 240 VPV+I+ D A +A LF S A ++ ++ VG GVI +G L++ Sbjct: 179 FATAFRVPVFIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLG 238 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + EIGH +D G+ C CGN GCLE S +I ++ + +L Sbjct: 239 AATEIGHISIDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARAL 298 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 A GD A I+ V +VG + N +NP+ I+IG +++A IL + ++ Sbjct: 299 FAKAGDGDEAAIAIVREVAQYVGYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVA 358 Query: 361 QQALP 365 ++A+P Sbjct: 359 ERAIP 363 >UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ATI4_STRRD Length = 457 Score = 319 bits (820), Expect = 9e-86, Method: Composition-based stats. Identities = 101/429 (23%), Positives = 173/429 (40%), Gaps = 33/429 (7%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 QP +++TN V R + G SR D++ L A+++ ++ E+LE LV+E+ Sbjct: 15 AQPAGHASLRRTNLSLVLRHLRDHGSSSRADIAEATGLHRATVSNLMAELLERRLVREVG 74 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL--KDDL 122 I+ AG GRP + ++ L L I+ + + DL +++VE Sbjct: 75 IEHAGTVGRPRRAVALDGAHVGVLGLEINVDYVAVHGTDLGGRVLVERRVGFDAMGSGTN 134 Query: 123 PLLDRIISHIDQFFIRHQKKLE-------------------------RLTSIAITLPGII 157 L + Q + R+ I + +PG++ Sbjct: 135 HSLRELGRVARQAIDELTRAGAGPSGLGPGDLAAAGASGIAAAGGGIRVAGIGVAVPGLV 194 Query: 158 DTENGIVHRMPFYEDVKEMPLGEALEQHTG---VPVYIQHDISAWTMAEALFGASRGARD 214 D +G+V P +++ L L G PV + +D + +AE G + G D Sbjct: 195 DVGHGVVALAPNL-GWRDVSLASRLSVALGDVRAPVTVDNDANLAALAEYTSGVAAGTAD 253 Query: 215 VIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSI 274 ++ + + VG G+I G LL E+GH VDP G RC CG GC ET + ++ Sbjct: 254 MVYLTGEVGVGGGIIVGGRLLRGADGFSGEVGHMPVDPGGSRCGCGRSGCWETKVGLAAL 313 Query: 275 LELAQLRLNQSMSSMLHGQPLT-VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLF 333 + +A M + P V + + GD L + VG +G +I+VNLF Sbjct: 314 VRMATPDQAYGMGTTPVPDPEERVAEIARGLAGGDPLMLAAVAEVGRWLGLGGSILVNLF 373 Query: 334 NPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKD 392 NP+ I++G + A L P + + + ++ GAA +V + Sbjct: 374 NPRVIVVGGYFATLARWLLPFAQAELEDLVVAGPAARCRFVASDLGFGAASLGAANVVIN 433 Query: 393 AMYNGSLLI 401 + + I Sbjct: 434 QLIDDPTAI 442 >UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EN99_9FIRM Length = 450 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 82/404 (20%), Positives = 172/404 (42%), Gaps = 19/404 (4%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE- 64 +++ +K +N A+ +L++ G +SR D++ L PA++T I ++L A ++ E Sbjct: 53 TGINLENVKVSNRSAILKLLNDHGAMSRKDIALELGLTPATVTLICTQLLSAGILVEKGE 112 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLP 123 ++E GR V + + + + LS+ I E +++ DL +L+ + + Sbjct: 113 MEEEKRAGRKKVSIDINYQYKYVLSVSIEAPETCISISDLKGRLIAGRKLKTDGALEPQV 172 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE-MPLGEAL 182 L ++ E + I+LPG + + G+ Y E +P+GE + Sbjct: 173 FLKQVADEGKSLMWEQGISKESVLGAGISLPGPVKRDTGVSLHA--YRIWNEAVPVGEYM 230 Query: 183 EQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 + + +PV +++++ A+ E ++G + +++ + VG+ +I + + +S Sbjct: 231 KMYLDLPVVVENNVKAFAEGELIYGTGKNQENLLFIKWGPGVGSAIIIQNKIYDSQNSKT 290 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLT 296 EIGH V+P G C CG GCLET + ++ E + + L + + Sbjct: 291 AEIGHYIVEPGGLPCRCGRRGCLETHVATHAMAERVRRACTKESMPGLYAFVDGDVEKIE 350 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVIS 356 V ++ Q D + II + + R + + L P K++I + + I Sbjct: 351 VRNMEQWIEIEDPGLQKIIDDIVERLARTVVNTITLLAPDKVIIYGFMFE-----MDHIQ 405 Query: 357 DSIRQQA--LPAYSQHISVESTQFSNQGTMAG-AALVKDAMYNG 397 + + + S++ G A+V + M+ G Sbjct: 406 KRFLDFCTYYDSLYDGDYILKSGLSDRIGYIGPLAIVVNEMFLG 449 >UniRef50_UPI0001B509AF ROK family protein n=2 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B509AF Length = 408 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 168/394 (42%), Gaps = 13/394 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 V L+ SR +++R + L ++ K V ++ +++ELE E+ RGRP Sbjct: 21 LRKVLDLVVSGEATSRAEIARRSGLVRTTVGKQVDHLVARGILEELESSESV-RGRPPRV 79 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LKDDLPLLDRIISHIDQFF 136 L + A + +A+ DL+ +++ +E+ + +L+ + + Sbjct: 80 LTLSPRAGTVAVADVDTLASQVAIADLTGRVLAQETVGVRIATGPETVLETVTERLMALL 139 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 + + R+ ++ + LP +D + G R P+ + L + P + +D Sbjct: 140 AQCGRDSGRVRAVVMGLPAPVDFQRGCTVRPTGMPGWGGYPVADELRKRFRCPALVDNDA 199 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVI-TDGHLLHAGSSSLVEIGHTQVDPYG- 254 + + EA G + ++ + I VGAG++ +G L + +IGH + G Sbjct: 200 NLMALGEA--GQEQDGTPLVCIKISAGVGAGIVTAEGELYRGADGAAGDIGHIRAVGGGG 257 Query: 255 -KRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKD 313 C CGN GCL +AS ++L + S V L + + A Sbjct: 258 DVLCSCGNDGCLSALASRPAVLRSLGI-----PESTDEDPLHGVRVLAERVADNEPNAVR 312 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 + G VG I A++V++FNP+ +++G PLS+ D L + + Q+ L + +++ Sbjct: 313 ALRQAGTDVGEIAAMLVSMFNPRTLVVGGPLSELRDDLLSGVRAVVYQRGLALATSKMTI 372 Query: 374 ESTQFSNQGTMAGA-ALVKDAMYNGSLLIRLLQG 406 + + + G AL +++ + R++ G Sbjct: 373 TTPRLGESAGIHGGIALATREVFSAQGVARMMVG 406 >UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acnes RepID=D1Y8Z8_PROAC Length = 403 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 164/399 (41%), Gaps = 14/399 (3%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 ++ N + + P+SR +LSR L+ ASIT + E+ LV+E Sbjct: 12 DHGTMRTINLALLLGALRSE-PISRAELSRRTHLSKASITNLAAELAARGLVREGSPDRN 70 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDL--PLLD 126 G GRP L +E + L I+ + + + DL ++ + +Q + +LD Sbjct: 71 GTVGRPGTMLTLEGARVCGVGLEINAEYLAVCVVDLCGTVLYDRAQPFDVASLPISDVLD 130 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 + + + + + ++ PG+I G VH +++PL L Q Sbjct: 131 EVAGIMRDTLEQLHSARRHVAQVMVSAPGVIKQPAGTVHLASNL-GWRDVPLRSQLLQRL 189 Query: 187 GVPV--YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 + +++D +AE RD++ + D VGAG+I G L+ S E Sbjct: 190 DADISLQVENDAKLAAVAEYRRYEDSDVRDLVYLSGDIGVGAGIIAAGQLMRGWSGFSGE 249 Query: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAA 304 +GH +DP C+CG GC E + L RL+ L Q + A Sbjct: 250 VGHLHLDPRNLPCHCGRTGCWEARVGLPEFLAHTGDRLDAQPIDRLLIQ------IQDRA 303 Query: 305 LRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQAL 364 RGD + + + + L++++++ NP+ +++G S D L P I+ + + L Sbjct: 304 TRGDQQVLNALDNLATSLAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTARRL 363 Query: 365 PAYSQHISVESTQFSNQGTMAGAAL-VKDAMYNGSLLIR 402 + + + Q + GAAL D+++ L + Sbjct: 364 DPGAGAL-LAGAQLGMVSSAHGAALTALDSVFANPLSVP 401 >UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c RepID=D1VEG0_9ACTO Length = 423 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 92/408 (22%), Positives = 164/408 (40%), Gaps = 28/408 (6%) Query: 10 IDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLE-AHLVQELEIKEA 68 +++++ N + R + GP R L+ L ++I + ++ A LV+E Sbjct: 15 QEELRRHNLSLLLRYVHLAGPTQRATLTAQTGLNRSTIGALAADLASTAGLVREESPDTH 74 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL--KDDLPLLD 126 GRP++ +V ETE + L+ + I A L L+ E L + ++D Sbjct: 75 SGAGRPSLVVVPETERYQVLAFDLGVDRIIAARVGLGGALLSREVVPLPPGERGFTAVVD 134 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 + + L I + +P ++ + +G V P ++ PLG AL Sbjct: 135 LTAATARRLAEALG-PLTHCAGIGVAVPAVVRSADGFVRFAPNL-GWEQQPLGAALRAAL 192 Query: 187 --GVP------------VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDG 232 +P V + +D +AE G +RG D++ + +GAG+I +G Sbjct: 193 VDALPDRAIGGPVGSPAVQVANDADLGALAEHARGVARGHDDIVYLSGQVGLGAGIICNG 252 Query: 233 HLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHG 292 L E GH V+P G+RC CG GC ET D+IL A Sbjct: 253 RPLRGHGGYAGEAGHMIVNPTGQRCRCGARGCWETEIGTDAILRAAGHEPGDGG------ 306 Query: 293 QPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 +V ++ A GD A+ + V + + +VNLFNP+ ++ G L +++ Sbjct: 307 ---SVRAVVAEASAGDARARLALYEVSRWLAVGVGNLVNLFNPELVIFGGELRDLLEVVE 363 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL 400 + + L +H+++ + ++ GAA + A L Sbjct: 364 HDVVGRMGAGGLTVSREHVALVPSALGGDSSLFGAAELAFAHLLDDPL 411 >UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIY1_9ACTO Length = 423 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 155/387 (40%), Gaps = 8/387 (2%) Query: 9 HIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA 68 D + T AG + L+ +SR++L+ L+ L A+IT +VR +++ LV E+ +E Sbjct: 23 RNDDGRVTTAGRMLDLLRTRSTLSRVELAELSGLTQATITHVVRRLIDGGLVLEVG-REQ 81 Query: 69 GNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQE-LALKDDLPLLDR 127 RG+P L + +AW+ + +++ R + + D + + V + Sbjct: 82 QGRGQPRRLLELNADAWYAVGVQVDRTTTTIVVIDFAGRRVATAGFRGTGTSGPDAAVSA 141 Query: 128 IISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG 187 + HID ER+ + + G D E G++ D + PL L G Sbjct: 142 LADHIDDLLHSTAVPRERVIGVGLVTHGPQDRERGMLLMAHPTPDWLQYPLTSTLSNRLG 201 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +PV +++D +A E G + + +G G++ +G+ +S+ VEIGH Sbjct: 202 LPVLLENDATAAATGEQWSGTVP-TDTFGLIYLGSGLGGGIVANGNAYRGRASNAVEIGH 260 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQL----RLNQSMSSMLHGQPLTVDSLCQA 303 + C CGN GC E A +++ + + + + +A Sbjct: 261 VGLMGASAPCVCGNCGCAEAEAGPHTVVAQVLAHPDLAGRLGIKAHEEDTLADFERVARA 320 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSP-LSKAADILFPVISDSIRQQ 362 D A I+ +GR MVNLF+ +++ P L A + + + + Sbjct: 321 WQADDPDATAILQRSARWIGRAAVTMVNLFDLDTVVLAGPALISAGPLYQHFVEAELTRH 380 Query: 363 ALPAYSQHISVESTQFSNQGTMAGAAL 389 AL V + + G AL Sbjct: 381 ALSRALSRPRVLLSANVDTAAAIGGAL 407 >UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7J1_9RHOB Length = 402 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 167/396 (42%), Gaps = 8/396 (2%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + +Q+++ N V + + ++R+DL RL L+ A++T I ++ + L+ E+ Sbjct: 1 MIEKASREQVRRQNRFVVLSTLRRHTTLARVDLGRLTGLSLAAVTSITADLKDRGLIAEV 60 Query: 64 EIKE---AGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E + A RGRP L + + H +++++S + LAL D + E + D Sbjct: 61 EEQPNPDANTRGRPRTYLRLRDDVAHVITVKLSVDRVSLALVDYTGHQHAEAKFMVESSD 120 Query: 121 --DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 + + I + + I + GI+ NG + P + +++ L Sbjct: 121 MGGDAFIALLAREIKALLKTEPLRARSVMEITVATQGIVGKHNGSIIWSPTIAE-RQVEL 179 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 L + G+ + +D + A A + + + + V ID VG G+ L Sbjct: 180 TAKLSKTLGITCTLYNDTNMIAEALHRQDAEKYSGNFVVVYIDRGVGMGIFIKNALYRGE 239 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + + E GH+ P G C CG GCLE + ++ AQ ++ S + P + Sbjct: 240 TGAAAEYGHSPFTPDGAACRCGKKGCLEAYIADYALYREAQKLPKETSPSAMFYGPEYIQ 299 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 +L A GD A+ + T G +G LA ++L +P +I++ +A D+ ++ Sbjct: 300 NLRARARVGDAQAQKVFTDAGFALGVSLARTISLLDPSRIVLTGKAMQAYDLFKHGMNKG 359 Query: 359 IRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAM 394 + L +++E + + G L+ A+ Sbjct: 360 LESSLLAPLLDAVNLEVLPWDEDFILQG--LLIKAL 393 >UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=Actinobacteria (class) RepID=A9WL96_RENSM Length = 416 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 164/390 (42%), Gaps = 14/390 (3%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 G ++++ +R +L+ L LA +++ + + L+ + GRP + Sbjct: 36 GELFQIFRDGQARTRAELAELTGLARSTVAARLDALTALGLIGPAGEAVSSG-GRPPSRV 94 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIISHIDQFFI 137 A ++ + + +AL DL +L+ E + D +LD +I + Sbjct: 95 AFNPTARIVFAVDVGATHLLVALTDLGGRLLGERKVAADVSDGPEKVLDLVIRQCQELLA 154 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDIS 197 + + L I I +PG ++ +G P + +++ V + +D++ Sbjct: 155 ESGRSAKELAGIGIGVPGPVEHSSGKPASPPIMPGWDRFDIPSYIQRVFDTDVLVDNDVN 214 Query: 198 AWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY-GKR 256 + E R A+D++ + + +G+G+I+ G L + ++GH +V G Sbjct: 215 IMALGERAA-HWREAQDLLFIKVATGIGSGIISGGLLQRGADGTAGDLGHVRVARGEGII 273 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIIT 316 C CGN GCLE IAS +I + + + G++ A + Sbjct: 274 CRCGNEGCLEAIASGPAIARALTESGVPAN---------NGEEILALVRAGNVQAIQVFR 324 Query: 317 GVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVEST 376 G VG +LA V++ NP ++IG LS A + L + + + ++LP + +S+ + Sbjct: 325 QAGRDVGDVLATCVSMLNPAVVVIGGSLSAAGEHLLAGVREVVYARSLPLATSRLSIVQS 384 Query: 377 QFSNQGTMAGAA-LVKDAMYNGSLLIRLLQ 405 + + + GA+ +V D + + S + L Sbjct: 385 KAGAEAGVLGASRMVTDHVLSASRIDAALA 414 >UniRef50_A0KL20 Mlc protein n=2 Tax=Aeromonas RepID=A0KL20_AERHH Length = 411 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 133/405 (32%), Positives = 224/405 (55%), Gaps = 6/405 (1%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + E G ID I+Q N G VY +++ +SR DLSRL L+PASITKI RE+L+ LV Sbjct: 9 MNEIVKGSIDLIRQLNYGLVYASLEEHKELSRTDLSRLTGLSPASITKITRELLDGGLVV 68 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 + + RGR L + + +LS+R+ RG + +AL DL+ + + + + Sbjct: 69 TCG-ESSVGRGRRQTLLRINERRFQFLSMRLGRGYVDMALFDLAGRSLARHRHVFSEGER 127 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 LL ++ I+ F KK RL IA+ LPG ++ +G+V P + D++ PLG Sbjct: 128 ADLLASLVRAIEGFL---PKKALRLACIALCLPGQVERHSGMVKHFP-FYDLRNWPLGPT 183 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L++ VPV + D+ W AE +GA++ D + V + +++G G++ +G L+ + S+ Sbjct: 184 LQEAFAVPVLVSGDVRTWIQAEREWGAAKNCADAVLVFVHNDIGVGMVVNGQLIESESAL 243 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 L ++ H Q++PYG+RCYCG GC T+ + ++ + + L + +T+ LC Sbjct: 244 LGDLSHLQLEPYGQRCYCGGFGCACTLVTNQALEAQYRDLRERMQEYDL-PESVTIRELC 302 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + AL G+ L +DI+ + R+L+ ++ L NP K+L+G +++A +LFP++ S+ Sbjct: 303 ELALAGNSLCQDILHQAAGRLSRVLSNLICLLNPGKLLLGGEITRADRLLFPMLHQSLAS 362 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 Q Y + +EST F T + V A+ +GSLL+ LL+G Sbjct: 363 QLPAEYLVRLQIESTHFYEDPTKPTSVQVHKALRDGSLLLDLLRG 407 >UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A233_RHILW Length = 321 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 75/303 (24%), Positives = 135/303 (44%), Gaps = 6/303 (1%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLPLLDRIISHIDQFFIRHQKKLE 144 + + + ++ AL D +++ ++ +L +I D+ K Sbjct: 4 VAIGIDLGGTQVRAALVDEHGRILTRLAEPTDALAGPDRVLAQICGLADRLLAAS--KPA 61 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 + + ++ PG +DT G+ +P + PL L++ PV +++D A + E Sbjct: 62 SVVGVGVSAPGPLDTVTGVATDIPTLPGFVDFPLKAELQKRFAFPVDLENDAIAAAVGEW 121 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 FG +G +++ V + +G GVI+DG ++ +GH V P G+ C CGN GC Sbjct: 122 QFGIGKGLDNLVYVTVSTGIGGGVISDGRVVRGRKGMAAHVGHMSVVPNGELCPCGNRGC 181 Query: 265 LETIASVDSILELAQLRLNQSMSSML--HGQPLTVDSLCQAALRGDLLAKDIITGVGAHV 322 E S + AQ+R +S + L +G + S+ AA GD LA ++ + Sbjct: 182 FEAYGSGPAFARRAQMRAMESRDTTLGSNGGAIDSRSVFAAARNGDRLANQLVDEEAEIL 241 Query: 323 GRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQG 382 GR ++++F+P I++G LS D L P I I Q A+PA+ + + V Sbjct: 242 GRGFTNLIHIFSPDIIVMGGGLSHEFDRLQPGIQAYISQWAMPAF-KDVKVVLAALDQNS 300 Query: 383 TMA 385 + Sbjct: 301 GLV 303 >UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=Clostridia RepID=A5CYL2_PELTS Length = 337 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 79/328 (24%), Positives = 151/328 (46%), Gaps = 9/328 (2%) Query: 83 EAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP-LLDRIISHIDQFFIRHQK 141 +++ + + + +I+ AL +++ E L ++DRI+ ++Q Sbjct: 2 NSFYVIGVDLGGTKIYTALAADDGRVLSEIKLPTEAGRGLQGVIDRIVHSVEQVRENVAV 61 Query: 142 KLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTM 201 +++ ++A+ PG +DT G++H P +P+ + LE+ +PV + +D + + Sbjct: 62 PPQKVLALALGAPGPLDTAGGVIHFAPNLR-WNNVPIRQILEERLSLPVLLDNDANLAAL 120 Query: 202 AEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGN 261 E +FGA RG +++ + + VG G+I DG L S EIGH V P G C CGN Sbjct: 121 GEHVFGAGRGCGNMVYITVSTGVGGGLILDGKLYRGSSDGAGEIGHMTVLPDGPVCSCGN 180 Query: 262 HGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLLAKDII 315 GCLE +AS +I A + + + ++ AA GD A II Sbjct: 181 RGCLEAMASGTAIARAAAELVASGGGRKILAAAGGDPGRINAAAVAAAAAGGDPEAAAII 240 Query: 316 TGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVES 375 ++G +A ++NL NP +++G + + + ++ + ++ +AL A + Sbjct: 241 DRAAGYLGIGVASILNLLNPAMVVLGGGVMEIGEPVWKGVRREVQARALQAARSRARLVP 300 Query: 376 TQFSNQGTMAGA-ALVKDAMYNGSLLIR 402 + + + GA AL + +G+ L Sbjct: 301 AELGGRAGVMGAIALALQEIADGNCLPP 328 >UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI Length = 373 Score = 318 bits (815), Expect = 4e-85, Method: Composition-based stats. Identities = 92/368 (25%), Positives = 169/368 (45%), Gaps = 10/368 (2%) Query: 31 VSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEA-WHYLS 89 ++ DLS+L + +T IV ++++ V E + + GR A+ ++ E ++ Sbjct: 2 LTLTDLSKLTHKSLPLVTGIVNDLVQDGYVVEHGLAPSTG-GRRALTFLLNKEKQKFIVA 60 Query: 90 LRISRGEIFLALRDLSSKLVVE-ESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTS 148 + + + + + D+ + + VE L L D+ + IS I + + E++ Sbjct: 61 VSVDQLITTVVIYDMLNNIQVEPAKIYLNLADEQTSMALFISFITGYIAKSGISEEQILG 120 Query: 149 IAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGA 208 I I +PG+I+ + G+ F++ E L L PVYI +D S +AE FG Sbjct: 121 IGIGMPGVINAKLGV--NHTFFKIKNEGNLKNYLSDALKFPVYIDNDSSLIALAELKFGE 178 Query: 209 SRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETI 268 R +DV+ V I +G G+I +G + S E H + K C CG GCLE Sbjct: 179 GRNMKDVMVVNIGWGIGLGMIINGDIFRGHSGYAGEFSHIPLSQSNKLCSCGKRGCLEVD 238 Query: 269 ASVDSILELAQLRLNQSMSSM-----LHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVG 323 S+ ++E A+ + +SS L L + AA GD LA I++ +G Sbjct: 239 TSLLVLVERAKAEIAAGISSRLEQLFLDDSKLPGEHFLIAARDGDPLAVSILSDAAFLIG 298 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 + L+ ++++ NP+ I++G + A I I +I + +P + H + + + + Sbjct: 299 KGLSTLIHILNPELIVLGGRGATAGKIFMAPIQHAINEFCIPRLADHTKISVSASAERSE 358 Query: 384 MAGAALVK 391 + GAA++ Sbjct: 359 LLGAAILV 366 >UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q736_CATAD Length = 402 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 90/398 (22%), Positives = 161/398 (40%), Gaps = 19/398 (4%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M + Q ++ N + + +R DL+R + L+ A+I+ +V +++ LV Sbjct: 1 MTSRAQKTT-RDLRWHNRADLLTRLYLGEATNRNDLARASGLSAATISNVVSDLIGDGLV 59 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 E + + GRP L V H + + I EI + L D + V EE++ + + Sbjct: 60 GENGSQSSAG-GRPRSLLRVLPAFGHVVGIDIGETEIRVGLFDWTLHPVAEEARPVDIPR 118 Query: 121 --DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPL 178 + D+++S I R ++ L + I +PG G V P +PL Sbjct: 119 VPPQQVADQVLSEIAAVTARAGIAVDDLLGVGIGVPG----AGGSVIHAPTL-GWSAVPL 173 Query: 179 GEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAG 238 L G I + A AEA GA+RGA + +++ G + L Sbjct: 174 AGLLRDRLGFTPDIDNGAMALGQAEAWRGAARGAERAVALLLGTGAGGAL----SLAAGP 229 Query: 239 SSSL----VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQP 294 +E GHT VD G C CG GCLET ++IL + + + Sbjct: 230 GGRARSFTMEWGHTVVDLEGPHCRCGARGCLETYIGAEAILARYAATPGSTPLAEDGVEA 289 Query: 295 LTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA--ADILF 352 + + +A+ + A +++ ++G ++ ++NL P +++I L Sbjct: 290 QLSELVARASQHHESAALEVLDATATYLGVGISNLINLVAPDRVIISGWAGALLCDAALL 349 Query: 353 PVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALV 390 P + +R+ ALP + +E + T GAA + Sbjct: 350 PAVRRVVRRHALPYLQEFTRIEPGELGPSATALGAATL 387 >UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY82_9CLOT Length = 400 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 74/393 (18%), Positives = 171/393 (43%), Gaps = 16/393 (4%) Query: 13 IKQT-NAGA-VYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 +++ N +I + G +++ + + + ++ ++++ + + L+ E I ++ Sbjct: 5 LRELSNRELETLDIIQKKGLITKKSIQAITGMTLTTLNRVMKSLEDKKLISEAGISKSTG 64 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRII 129 GR AV V + + + +SR + + + +L ++ ++ + +++I Sbjct: 65 -GRKAVKYDVAQSGIYAIGVDMSRTYVRIVILNLKMTILEKKEFFMDDSFSPEKTVEKIG 123 Query: 130 SHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYED--VKEMPLGEALEQHTG 187 + ID+ ++ + I I G +D E G++ + + +P+ + E+ T Sbjct: 124 NIIDEGLLKLSIDKSEVLGIGIGTVGPLDREKGVMINPKNFFNELWSNVPIRDMFEKRTS 183 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +P +I + +A +AE LFG + ++++ V + + VI +G ++ S H Sbjct: 184 LPCFIDNGTNAAVLAEYLFGKGKDFKNIVYVHCGIGIRSAVINNGIIIRTMRDSEDAFAH 243 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLN-QSMSSMLHGQPLTVDSLCQAALR 306 VD G+ C CGN GCL++ +S+++I++ L + + + + + + Sbjct: 244 MVVDFNGEECSCGNKGCLDSYSSINAIVKSFNSILKNNNNDTNEEIKEEDYKKILELTVN 303 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ-QALP 365 + A +II +G LA MV + NPQ +++ PL K + + D+ + L Sbjct: 304 NNKSAVEIINKGAEILGVGLANMVRILNPQLVILYGPLIKNYKLYYNKCIDAFNKSNCLN 363 Query: 366 AYSQHISVEST---QFSNQGTMAGAALVKDAMY 395 V + +F G+ L+ Y Sbjct: 364 N-----EVIFSDGGEFKGNAIAVGSGLIVIENY 391 >UniRef50_B5GCP5 Transcriptional regulator n=2 Tax=Streptomyces RepID=B5GCP5_9ACTO Length = 403 Score = 316 bits (812), Expect = 8e-85, Method: Composition-based stats. Identities = 86/411 (20%), Positives = 153/411 (37%), Gaps = 25/411 (6%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGP-VSRIDLSRLAQLAPASITKIVREMLEAHLV 60 + + ++ ++ N V I + +SR++L+ L+ +++ I R +L+ + Sbjct: 11 TSIRRGTNLPRMGDFNESVVLDAIRRHKAGLSRVELAEATGLSAQTVSNITRRLLDQGVA 70 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK- 119 +E ++ G+P L V A + + + + I L DL +V S+ Sbjct: 71 RESGK-QSTGSGKPRTLLQVTPGARYAIGVHLDPAVITYVLLDLLGTVVARRSEPTPRGV 129 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 LL + + + ER+ + I PG +D G+V P PL Sbjct: 130 HTEALLAGMAASVGALIEDSGVDQERVLGLGIAAPGPVDPVAGLVIDPPELPGWGSFPLR 189 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 E LE TG P + D+ A +AE GA+ +R+ + + G G++ D +L S Sbjct: 190 ERLEADTGFPALLDKDVVAAAVAERWSGAATDSRNFLFFYLGTGSGMGLVVDDTVLRGSS 249 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQS---MSSMLHGQPLT 296 ++ E+G G L S +++E A + + Sbjct: 250 GNVGEVG----------------G-LGAACSSRALVEEAIELGALGHEFTPTDPQDAQRS 292 Query: 297 VDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGS-PLSKAADILFPVI 355 + L + A G+ A II G +GR + L + I+ G A L P+I Sbjct: 293 LQHLARIAADGEPRAAGIIDRWGVRIGRGVTAAATLLDSDTIVFGGPLWPLLAPRLLPLI 352 Query: 356 SDSIRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGSLLIRLLQ 405 + + +V +T GAA LV D + LL Sbjct: 353 EPMVAESPFVKPVHGTTVTTTAIGEDVAAVGAACLVLDRTLSAQPRSLLLA 403 >UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VV97_9CLOT Length = 406 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 70/370 (18%), Positives = 165/370 (44%), Gaps = 8/370 (2%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 + +I +SR D+ ++ + +++ I+ +++ + +V E + +E GR V Sbjct: 15 RNKILNIIRSNENISRYDVKKMTMYSMSTVLDIIDDLIASGMVYEADCEEP-RVGRKPVW 73 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFF 136 L + E +++ + + A+ D + +++ + ++L + +L +I HI Sbjct: 74 LRLNPEGGYFIGAEFNAFHLHCAMLDFTGEIIYQSEEDLLPDQGKDAILALLIRHIHAAI 133 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 + K ++ +I++ +PG ++ + I +D + +P+ + LE +P Y+ +++ Sbjct: 134 DAVKGKPGQIFAISVGIPGYLNEDKSIALSHFRLKDWENVPVKKILEDEFHLPCYLDNNV 193 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 + A + RD + V I V + + HL+ + E+GH +V P+G Sbjct: 194 NVMAFAYKWLRYNGDCRDFLFVSIRTGVRIVPVINNHLILSRGGLSGELGHVKVAPHGTL 253 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLL 310 C CG GCL + S SIL + + +T++ C++A + Sbjct: 254 CSCGGIGCLNSEISDLSILGKLKAGFEFGRFPEIMEMAGGDPDKVTLEMFCESAAQEHSD 313 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 + ++ + +G L + VN+ P+ +++ L++ + F IS + + + Q Sbjct: 314 SVKLMLDLANILGEALGMAVNILAPEVVVLSGQLAQLGEPFFQEISKVLERNVVQEIYQG 373 Query: 371 ISVESTQFSN 380 + V ++ F+ Sbjct: 374 LKVTASVFNE 383 >UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG9_9FIRM Length = 322 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 70/313 (22%), Positives = 133/313 (42%), Gaps = 11/313 (3%) Query: 84 AWHYLSLRISRGEIFLALRDLSSKLVVEESQ---ELALKDDLPLLDRIISHIDQFFIRHQ 140 + +YL + I + AL K+V + + + + +D R Q Sbjct: 2 SKYYLIMDIGGTKTTGALFTEDGKIVDDYTYVSKSPTFEGKEAVYQNTRGVLDHIVERFQ 61 Query: 141 KKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWT 200 L+ + I + PG +D+ GI+ P K PL E L +PV + +D + Sbjct: 62 VDLKDVLGIGVGCPGPLDSRKGIIIHAPLMR-WKNFPLVERLSHDFQLPVALDNDGNLGA 120 Query: 201 MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCG 260 +AE G ++G +V+ + + G G++ +G + H E+GH +DP G C CG Sbjct: 121 LAEQRCGVAKGLDNVMYMTVSTGCGGGLVINGEIYHGKHDGAGEVGHMSIDPEGLDCPCG 180 Query: 261 NHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLLAKDI 314 GC E AS ++ + + SM+ + + L +AA +GD A Sbjct: 181 GKGCFELYASGTAMNRRMREDMAAGKKSMVFELAQHDPKKIEGRLLTEAAEKGDTYALAF 240 Query: 315 ITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVE 374 ++G ++ + NL++P+ +++G ++KA + IR + L S+ Sbjct: 241 FKQQAYYLGVGISNLFNLYDPEVLVLGGGVTKAKAFYHDEMMRVIRSRCLQPVEDD-SIR 299 Query: 375 STQFSNQGTMAGA 387 + +++ + GA Sbjct: 300 YSVMNDRVVLYGA 312 >UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDD5_THET1 Length = 321 Score = 314 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 146/313 (46%), Gaps = 10/313 (3%) Query: 85 WHYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFFIRHQKKL 143 + + + + + L + + + A K +L+RI+ + Sbjct: 4 RYVIGVDLGGSRVRAVLANEKGEFLDRCEFPTLADKGLYFVLERILECVRSVSSNAP--- 60 Query: 144 ERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAE 203 R+ +I + PG I+++ G+V P +PL + +E+ TG+P ++ +D + + E Sbjct: 61 -RIDAIGVGAPGPINSKEGVVSNPPNLPGWVNVPLAKLIEEKTGIPTFLGNDANLAALGE 119 Query: 204 ALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHG 263 +G+ + + +I + + VG G+I DG LL + + E+GH V P G +C CG +G Sbjct: 120 FTYGSGKYVQHLIYITVSTGVGGGIIIDGQLLEGHNGAAGEVGHMVVQPGGPKCSCGGYG 179 Query: 264 CLETIASVDSILELAQLRLNQSMSSML-----HGQPLTVDSLCQAALRGDLLAKDIITGV 318 LE ++S +I + A+ + + +++ + + +AA +GD LA ++ Sbjct: 180 HLEALSSGTAIAKRAREAASLNKDTIMIELAGSVDKINAKIVDEAAKKGDPLALKLLEQA 239 Query: 319 GAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQF 378 G +G L ++++FNPQ I IG +S+A ++L + + +P + Q + + Sbjct: 240 GQWLGYALINLIHIFNPQMISIGGGVSEAGELLLGPARKVVFEGLMPVFKQDLQIVKASL 299 Query: 379 SNQGTMAGAALVK 391 +AGA + Sbjct: 300 GGDVGLAGAVALA 312 >UniRef50_A5G397 ROK family protein n=7 Tax=Geobacter RepID=A5G397_GEOUR Length = 328 Score = 314 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 75/308 (24%), Positives = 134/308 (43%), Gaps = 5/308 (1%) Query: 88 LSLRISRGEIFLALRDLSSKLVVEESQELALKDD-LPLLDRIISHIDQFFIRHQKKLERL 146 + + + + AL D K++ E + + L R S I + + Sbjct: 11 IGIDVGGTNLRFALVDELGKVLFRERRSTEIHQGKEQFLKRFFSVIASLRTWADSSGKEI 70 Query: 147 TSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALF 206 +I +PG+I + +GI++ ++ + L E + G+P + +D +A E + Sbjct: 71 VAIGAGVPGLI-SNDGIIYSSVNLLPLEGLNLRELITAAAGLPAIVVNDANASAWGEKCY 129 Query: 207 GASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLE 266 GA R + + + VG+G++ + L E GH V+P GK C CGNHGCLE Sbjct: 130 GAGRSMNSFLMLTLGTGVGSGLVLNDKLWTGCDGVAGEFGHVTVEPDGKPCPCGNHGCLE 189 Query: 267 TIASVDSILELAQLRLNQSMSSMLHGQP---LTVDSLCQAALRGDLLAKDIITGVGAHVG 323 AS +++ A + L P L + L AA GD LAK I G ++G Sbjct: 190 QYASATALVAEAGEAIQAGGGGALANVPASMLNAEVLADAAHGGDALAKAIFENAGRYLG 249 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 A VNL N + I++G ++ + D++ + I +A ++ + + + + Sbjct: 250 IASAAAVNLLNLEGIILGGGVAASYDLIVEPMRREILARAFAIPARRVRLVRAELEDDAG 309 Query: 384 MAGAALVK 391 + GAA + Sbjct: 310 ILGAAAMA 317 >UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepID=A4WVU3_RHOS5 Length = 425 Score = 314 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 164/367 (44%), Gaps = 6/367 (1%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGR--PA 75 V+ + G +R+ ++R ++PAS+T IV E++EA LV+E+ + G GR P Sbjct: 32 RQQVFERVRAAGLTARVQVARDLGVSPASVTTIVSELIEAGLVEEVATRRGGESGRGRPV 91 Query: 76 VGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEE--SQELALKDDLPLLDRIISHID 133 V L V A + L+IS ++ + D + +L+ E + LL + + +D Sbjct: 92 VALGVRGAAHRVVGLKISDRDLSAVVMDFAGRLLAEHHEERRPVALAPASLLAVLETLLD 151 Query: 134 QFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQ 193 + + + L ++ I LPG +D+ G V + +++PLG + G+PV + Sbjct: 152 RVTAKAGLARQELAAVGIGLPGYVDSTGGRVLWSSILAE-RDVPLGRLATERLGLPVQVD 210 Query: 194 HDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPY 253 +D + MAE FGA R D + V I+H +G G++T+ + +E+GHT+V Sbjct: 211 NDANLCAMAELWFGAGRRLSDFVVVTIEHGLGMGMVTNHRIFRGARGIGMELGHTKVQLD 270 Query: 254 GKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKD 313 G C CG GCLE + ++ A L + ++SL A G+ A+ Sbjct: 271 GALCRCGQRGCLEAYVADYALAREATTAL-NWTHRESQSMAILLESLHDHAKAGNQAARS 329 Query: 314 IITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISV 373 I G ++ LA +VNL +P I++ + + + L + Sbjct: 330 IFRRAGRYLAVGLANIVNLVDPPLIILAGARLRFDYLYAEDTLAEMNALVLATGRPLPEI 389 Query: 374 ESTQFSN 380 E + Sbjct: 390 EIHAWGE 396 >UniRef50_C6B6F2 ROK family protein n=8 Tax=Rhizobium RepID=C6B6F2_RHILS Length = 400 Score = 314 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 83/393 (21%), Positives = 160/393 (40%), Gaps = 15/393 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + +++Q K N V + GP+SR ++R+ L +++ IV E+ +HL+ Sbjct: 1 MKAISGTNLEQAKSHNRRVVIEAVRTNGPLSRAAIARMTALTAQTVSNIVEELERSHLLV 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD 121 + ++ RG+P + + + + L + R L DLS + + + D Sbjct: 61 PSQAQKLA-RGQPIIPYSINPRGAYSIGLELGRQRASGVLTDLSGAVCARIERHVEHPDP 119 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMP-FYEDVKEMPLGE 180 + + + ++ RL + + LPG + G P ++ P+ Sbjct: 120 QRAMPALQAIVEDLQEAFAFDRNRLLGVGMALPGRY-ADGGTTSLSPLNLPGWQDFPVRH 178 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVI--DHNVGAGVITDGHLLHAG 238 LEQ VPV +++D +A + E L G +RG + + + +GAG+ DGHL Sbjct: 179 ELEQRIKVPVLVENDATAAAIGERLHGVARGLGSFVYLFLAGGGGIGAGMFLDGHLYKGS 238 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 ++ EIGH V+P+GK C CG GCL+ S + + + + L+ D Sbjct: 239 RNNAGEIGHIIVEPHGKLCSCGKRGCLDRYVSP---------AVAYEFMGIANAEELSSD 289 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 L +G + + + + + F+PQ I++G +S + + + Sbjct: 290 DLDALIAKGGEGLDVWLDQAVQPLRQTVDFLELAFDPQTIVLGGSISTSLMLRLAERLEP 349 Query: 359 IRQQALPAYSQHI-SVESTQFSNQGTMAGAALV 390 + P + + V + GAA + Sbjct: 350 LHTPIDPNQKRAVPRVMIGMTGKDTAILGAAAL 382 >UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (NagC/XylR) family n=1 Tax=Vibrio splendidus 12B01 RepID=A3UNW3_VIBSP Length = 405 Score = 313 bits (804), Expect = 6e-84, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 160/383 (41%), Gaps = 15/383 (3%) Query: 2 VAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQ 61 + +D ++ N + + G SR ++S+L L A++T+ ++ ++E L+ Sbjct: 1 MRSGLGVSLDDVQNHNKRVILNALHNSGSCSRKEISQLVGLDQATVTRAIKPLIEQGLIV 60 Query: 62 ELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD- 120 E +++A RGR ++ L T+ +S+RI R + DL+ + + + + Sbjct: 61 ETGVRKAA-RGRSSIYLGFNTQHLRIVSVRIQRTNFSIDTYDLNGVSLTNVVKPINTDNS 119 Query: 121 DLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGE 180 L++ + + + + IA+ +PG ++ + M ++ +++ Sbjct: 120 PEELIEYLTKQVSDVLKEQEC---DVLGIAVAMPGPFLEQDNKIMLMTDAKNWQDIDFIS 176 Query: 181 ALEQHT-GVPVYIQHDISAWTMAEALFGASRGARDVI-QVVIDHNVGAGVITDGHLLHAG 238 + + P+Y HD +A S V+ V + VG+G++ +G + H Sbjct: 177 HMREQFPDYPIYAGHDAKLAALAVWRQLQSTYEASVLLYVSLGQGVGSGLVIEGQVYHGS 236 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 + EIGHT ++ G +C CGN GCLE +S +++E + + + + Sbjct: 237 LGTAGEIGHTSINFQGPQCKCGNLGCLELYSSTTALVERYKQEASLVSA--------DFE 288 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 + A + A + + + + L +N NP ++IG L++ + + Sbjct: 289 MVVNAFHDRESAAINAVDYLAKCLAHGLVNNINQLNPDLVVIGDELTQLGADFLSRVKEY 348 Query: 359 IRQQALPAYSQHISVESTQFSNQ 381 + LP + +I + + Sbjct: 349 TYRLLLPDLASNIELVLDESDED 371 >UniRef50_C2CVT4 Transcriptional regulator n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CVT4_GARVA Length = 379 Score = 313 bits (803), Expect = 7e-84, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 158/387 (40%), Gaps = 35/387 (9%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 ++ +Q + N ++ + +SR L R +L+ ASI+ +V EMLE H++ Sbjct: 14 LMTVSQKTIPADARINNRMLIFNYLFPKQILSRAMLVRKTKLSKASISTVVYEMLEDHIL 73 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGE-IFLALRDLSSKLVVEESQELALK 119 E + RG+ L V+ W+ +++ +S+ I A+ +L ++ L K Sbjct: 74 VESGQESKIERGKKGTLLEVDANYWNIITIDLSQPCLIQGAVVNLCGDILKRSEISL-YK 132 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 ++II + I I +PGI+D + G V R + + + + Sbjct: 133 STDANCEKIIEVCKTLINNSN---NHILGIGIAVPGIVD-DEGRVVRSSNLQ-WENINIK 187 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 E L +H P+ + HD ++ +AE FG G + I + + VGA ++ + ++ + Sbjct: 188 EELIKHFNCPIIVDHDTNSALLAERFFGN--GVPNTIFIQLSLGVGASILINDAIITGIN 245 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 +S EIGH VDP G C CG GCLET S +++ + Sbjct: 246 NSAGEIGHITVDPQGPDCSCGKKGCLETYISAETLHRKMFTSNRKPED------------ 293 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 I+ G ++G+ L +NL + ++I P + +I Sbjct: 294 --------------ILAEAGNYLGKALTTTINLLDLTDVVIYGPSDIVNKVFISSTEKAI 339 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAG 386 ++ + +V +N T+ G Sbjct: 340 QEYGPYSPKHPCTVRRCTCNNDITLIG 366 >UniRef50_C3QC45 ROK family transcriptional repressor protein n=19 Tax=Bacteria RepID=C3QC45_9BACE Length = 402 Score = 313 bits (803), Expect = 8e-84, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 182/388 (46%), Gaps = 13/388 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVG 77 + I G + DLS+ L+ ++TK + EM + + + E GR Sbjct: 20 KRIITHYIY-NGSSTIPDLSKELDLSVPTVTKFIGEMCDDGYINDYGKLETSG-GRHPNL 77 Query: 78 LVVETEAWHYLSLRISRGEIFLALRDLSSKLVV-EESQELALKDDLPLLDRIISHIDQFF 136 + E+ ++L + I R + + L + +V + + ++ + ++ + HI F Sbjct: 78 YGLNPESGYFLGVDIKRFAVNIGLINFKGDMVELKMNIPYKFENSIEGMNELCKHILNFI 137 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 + E++ +I + + G ++ E+G + +E PL + L + G V I +D Sbjct: 138 KKLTINKEKILNINVNVSGRVNPESGYSFSQFNF---EERPLADVLSEKLGYKVTIDNDT 194 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 A T E + G +G +D+I V + VG G+I DG + S E GH Sbjct: 195 RAMTYGEYMQGCVKGEKDIIFVNVSWGVGIGIIIDGKIYTGKSGFSGEFGHMSAYDNEII 254 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSML------HGQPLTVDSLCQAALRGDLL 310 C+CG GCLET AS ++ + R+ SS+L P+T+D + A + DLL Sbjct: 255 CHCGKKGCLETEASGSALHRILLERIQSGESSILSTRIATEENPITLDEIIAAVNKEDLL 314 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 +I+ +G +G+ +A ++N+FNP+ ++IG LS D + I ++R+ +L ++ Sbjct: 315 CIEIVEEIGQKLGKQIAGLINIFNPELVIIGGTLSLTGDYITQPIKTAVRKYSLNLVNKD 374 Query: 371 ISVESTQFSNQGTMAGAALVKDA-MYNG 397 ++ +++ ++ + GA ++ + M+ Sbjct: 375 SAIITSKLKDKAGIVGACMLARSRMFES 402 >UniRef50_A8F699 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F699_THELT Length = 375 Score = 313 bits (803), Expect = 8e-84, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 170/386 (44%), Gaps = 19/386 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 I++ + + R++ + G +SR LS L+ ++++IV ++ +++E++ ++ ++G Sbjct: 2 IQKNSEREILRILRRSGHISRSKLSLQTGLSKPAVSEIVSGLISLGVIREVKKGKSSSKG 61 Query: 73 R-PAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELAL-KDDLPLLDRIIS 130 + L + + + +++ + ++ +AL DL S+++ LL+ I Sbjct: 62 GKRPILLEFKPDYRYIIAIDVGGTKLRVALTDLESRVIETRVVSSKGVTRKDDLLNLICK 121 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 +I F E++ I I +PG +D +NG V+ MP + +++ + L +++ +P Sbjct: 122 NISPFLEE----REKILGIGIGVPGTVDMKNGFVYYMPAF-NLRNIELKSMVQKEVDLPT 176 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 + +D++ + E GA+RG ++V+ + + GAG+I D H+ + EIG+ Sbjct: 177 LVANDVNLNALGEMWKGAARGHKNVLLISLGTGTGAGIILDRHMCNGSRGMAGEIGYMIT 236 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 D ++ G LE S ++ + + G+ + + L Sbjct: 237 DWSREKYNDFPFGNLEKWFSGYALEKKLKEIGENMSLKDFFGRTASSEDL---------- 286 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPL-SKAADILFPVISDSIRQQALPAYSQ 369 +I+ H+ + + L +P+ ++I + D + I + Q Sbjct: 287 -NNILNEACEHLALAMVNAICLLDPEVVVITGGIGFNQYDKIIEKIMPVFEKTVPAEIFQ 345 Query: 370 HISVESTQFSNQGTMAGAALVKDAMY 395 IS + ++ + G + GA + + Sbjct: 346 SISFKKSELGDMGVIVGANYLVQKEF 371 >UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Propionibacterium acnes RepID=Q6A638_PROAC Length = 397 Score = 313 bits (803), Expect = 9e-84, Method: Composition-based stats. Identities = 75/378 (19%), Positives = 151/378 (39%), Gaps = 18/378 (4%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 V +++ + ++R +++ + ++++ VR +LE+ +V+E ++ GR L Sbjct: 28 QRVIKILRKTPGMTRAEIAESTSMPRSTVSAAVRHLLESRVVEEYACADSTG-GRRPTKL 86 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFFI 137 V + + + LA+ +L+ + ++ ++ + + + Sbjct: 87 RVAPAVGNAFVAELGQHHARLAIASREGELLATDDIKINIEIGPEKTIKALAKGWHKLGD 146 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDIS 197 + S + +PG +D +G V + L Q VP I++D Sbjct: 147 EIPGA---VVSAGLAVPGPVDG-SGHVVGAARMPGWSGKDIAGMLAQELAVPSVIENDAR 202 Query: 198 AWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGK-R 256 A T+ E R I V +GAG ++ G +I H +V Sbjct: 203 AATIGE-WNCRGRHRDSCIYVKAGTGIGAGWVSGGVAYRGSRGLAGDITHLRVHTDNPLP 261 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIIT 316 C CGN GCLET+AS +IL + T L A GD A ++ Sbjct: 262 CTCGNSGCLETVASGAAILRQLGRLGSSIS---------TTSQLVTAENSGDPQAVSLVR 312 Query: 317 GVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVEST 376 G +G +L+ +VN NP +I++G +S+ L + + ++ LP ++ + +E++ Sbjct: 313 DAGMRLGEVLSNLVNFLNPVRIVLGGSMSQMGS-LLAGVRSELYERCLPMCTEDLVIETS 371 Query: 377 QFSNQGTMAGAALVKDAM 394 + G +++ M Sbjct: 372 ACGADAPLIGMSILDSHM 389 >UniRef50_Q1J318 ROK domain protein n=2 Tax=Bacteria RepID=Q1J318_DEIGD Length = 400 Score = 313 bits (803), Expect = 9e-84, Method: Composition-based stats. Identities = 74/406 (18%), Positives = 151/406 (37%), Gaps = 24/406 (5%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 + G +KQ N AV LI + +SR +L+ QL ++ +V+E+L+ + E Sbjct: 8 ARAGDQGFLKQLNRSAVLELIRREPGISRAELAARTQLTKVTVGAMVQELLDQGWLVE-G 66 Query: 65 IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 + G+ GRP L + L + + + L+ + + + + + Sbjct: 67 SLQQGSLGRPGRALHLNERRHVLLGAEVGVQGLRVVACTLTGRALGQRAILVPSTTPEAT 126 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + + I + + + + + +PG + + + P +++P L+ Sbjct: 127 AQHLATLIMEVLTYPEVAGREVLGLGVAVPGPVALHDPTLLFAPNL-GWRDVPFLTVLKP 185 Query: 185 HT-GVPV--YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGH---LLHAG 238 +P ++++ A E F + + + +G+G++ LL Sbjct: 186 FLPDLPGPWLLENEAKAAAFGEVYFSGGDKPELLAYLSLGTGIGSGLMVGAPVPYLLRGA 245 Query: 239 SSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVD 298 EIGH+ + G C+CGN GC ET+ S +I + + L Sbjct: 246 QGLAGEIGHSVLQSGGLYCHCGNRGCAETLVSGWAIRAALDIPPGVPLEPALQP------ 299 Query: 299 SLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDS 358 D + + G +G +L + + NP I++G L++ + L Sbjct: 300 ------RMQDADVQVTLRRAGEALGMLLTNLHHTLNPSDIVLGGSLTRLGEPLLGPALAF 353 Query: 359 IRQQALPAYSQ--HISVESTQFSNQGTMAGAAL--VKDAMYNGSLL 400 R+ Y++ IS+ S GAA + + S+L Sbjct: 354 FREHQHDLYTRTASISIHIRTDSTFLPARGAAAQVLASVFHESSVL 399 >UniRef50_C7R070 ROK family protein n=2 Tax=Micrococcineae RepID=C7R070_JONDD Length = 410 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 88/417 (21%), Positives = 162/417 (38%), Gaps = 34/417 (8%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLID-QLGPVSRIDLSRLAQLAPASITKIVREMLEAHL 59 M + +++ N V + I P+SR L+ L A+++ +V +++AH+ Sbjct: 1 MTVVHSAAGQHTLRERNLALVAQEIFGSKDPLSRAALAVRTGLTRATVSSLVDLLVDAHI 60 Query: 60 VQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQE--LA 117 V EL+ + GRPAV L + + L ++ + + DL+ Sbjct: 61 VAELDPVFSRKAGRPAVPLTPARGTYFGIGLEVNVSYLGGVIHDLTGTAYHRILLPGDFH 120 Query: 118 LKDDLPLLDRIISHIDQFFIRHQKKLER-------LTSIAITLPGIIDTENGIVHRMPFY 170 D +L+++ + + R +T + LPG++D N + P Sbjct: 121 GSDPATVLEKLAAVTTELITTATASELRPTHSTPIITGAHLALPGLVDPNNATLRIAPNL 180 Query: 171 EDVKEM------PLGEALEQHTG--VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDH 222 ++ P+ A+ TG V I ++ + +A I V + Sbjct: 181 -GWADLDPVDTTPISAAVTAATGQHTNVRIGNEANYGALAAK---EQANLNTFIYVSGEV 236 Query: 223 NVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRL 282 +G+ +I D L E+GH +DP G +C CG+ GCLE A +D++L AQL Sbjct: 237 GIGSAIILDHTLFLGRRGWSGELGHVTIDPTGPQCSCGSRGCLEQYAGLDAMLTAAQLDT 296 Query: 283 NQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGS 342 + ++ L A +G+ A D + +GR L+ NL + ++G Sbjct: 297 SAGITG-----------LVTALEQGNPHAHDAVQRAATALGRALSGYANLLDIHMFVLGG 345 Query: 343 PLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAAL-VKDAMYNGS 398 + + +++S+R Q L A + + M GAA +Y Sbjct: 346 IYADLYPHIVTTVTESLRHQVLSAPWADFDILPGTLGSGAAMLGAAYEAVRTVYTHP 402 >UniRef50_C0W4H3 ROK family protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W4H3_9ACTO Length = 412 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 91/408 (22%), Positives = 158/408 (38%), Gaps = 14/408 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M EN + + N V I ++R D+ R L+P +++ +VR +L+ LV Sbjct: 1 MTRENN--SPPRQAEVNRSLVLDTIRYAERLTRADIGRQTHLSPQTVSNVVRYLLKHDLV 58 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELA-LK 119 E RGRP + + + + + + + DL L+ E + L Sbjct: 59 LEAGTVAPEGRGRPGTTVQLNPHGRFAIGVHVDPSALGVVAVDLRGDLLYEHYEPLPFPN 118 Query: 120 DDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 D L I + ++ R + ER+ I I PG I E+G + R P ++ PL Sbjct: 119 DPTQSLTEIAAQTERAIARTGQPRERMLGIGIATPGPI--EDGRMTRPPLLPHWQDFPLR 176 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGA---SRGARDVIQVVIDHNVGAGVITDGHLLH 236 L Q T + D++A A + + I + DG + Sbjct: 177 SRLAQLTHTATLLDKDVNAAAQAHLWRHPTALGAHPNSFMFLYIGAGSALTAVLDGQVWR 236 Query: 237 AGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLR---LNQSMSSMLHGQ 293 S + E GH + G C CG GCL ++E A+ L S S+ G+ Sbjct: 237 GRSGNAGEAGHFSGNSTGLLCPCGQRGCLGISLGEKEMIEQARDLGLDLPGSTSTATPGE 296 Query: 294 PLTV-DSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILF 352 T+ L + A GD +A+++++G + + R+ ++ L ++IG P Sbjct: 297 KSTIFARLLRLADDGDPIAQEVLSGAASVIVRVTTVLSELLELDTLIIGGPRWPVMQKQM 356 Query: 353 PVISDS-IRQQALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYNGS 398 + D + Q+ ++ I S+ + GAA LV Y+ Sbjct: 357 EPLLDQPLSQRIFYGETRPIQTISSPLGARDAATGAACLVLSETYSAD 404 >UniRef50_D2B0X7 ROK family protein n=2 Tax=Actinomycetales RepID=D2B0X7_STRRD Length = 391 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 153/387 (39%), Gaps = 25/387 (6%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 Q D ++ N G V + + GP++R L+ + L +++K+V ++L A +V E Sbjct: 1 MTQAVRHDSMRARNLGVVLGEVRRSGPITRAALAEITGLTKTTVSKMVGDLLGAGMVTEA 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK--DD 121 G RGRP + + L L I+ + + DL+ + + +Q + + Sbjct: 61 GALRDGERGRPGTAVSLSGHRVAALGLEINVDYLSACVVDLTLSVRLRRTQAVDNRAASP 120 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + L + + + + + + +PG +D G++H P ++ +G+ Sbjct: 121 VETLAHLQELAHRAVDEARSEGLAIAGSTLAVPGPVD--GGLLHAAPNL-GWHDVRVGDL 177 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L PV ++++ + + E FG+ G D + V + VGAG++ G L Sbjct: 178 L----DFPVAVENEANLAALGELWFGS--GPSDFLHVSGEIGVGAGLVVGGALFRGARGL 231 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+GH V P G C CG GCLE A +++L A L V L Sbjct: 232 AGELGHVIVSPDGPTCRCGGRGCLEQYAGQEALLRAAGLDG--------------VPELV 277 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + G A G +G L V+L +P +++G + + +++ Sbjct: 278 ERLQAGTPGALRACERAGQALGVALTSAVHLMDPGTVVLGGIFAPLFPWIHGPARETMTA 337 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAA 388 + + ++ GAA Sbjct: 338 RLARMRHAVPELTVSRLGGDAASLGAA 364 >UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGH9_NAKMY Length = 386 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 182/397 (45%), Gaps = 16/397 (4%) Query: 4 ENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQEL 63 + + + + A+ RL+ GP SR DL+R +L+PAS+T+IVR + ++ LV E Sbjct: 2 SERTESFPALSEGSRAALVRLL-VHGPASRADLARRLRLSPASLTRIVRTLEDSGLVVES 60 Query: 64 EIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLP 123 E GRP+ + V +A H + +++ GEI L D+ S ++ + L P Sbjct: 61 ETTVPQRMGRPSQAMEVNVDAVHLVGIKLLAGEINLVRTDMRSTVLGHRTIPLQTVPLDP 120 Query: 124 LLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALE 183 +DRI I + ++ I+L G +D + +V PF +++PL + Sbjct: 121 AIDRITEAI---LAEVAVDPA-VGAVGISLAGPVDPSSDMVTHSPFL-GWEDVPLARLVS 175 Query: 184 QHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 + TG+P I++D+ A T AE FGA+ GA D + V I +G GV+ L+ + Sbjct: 176 ERTGLPTVIENDVRALTAAEHWFGAAAGATDFVLVTIGAGIGCGVVIGDRLVDGNTGGAG 235 Query: 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQA 303 +IGH + P G C G+ GC + + +++ A + LH LT L Sbjct: 236 QIGHLPITPSGPLCERGHRGCARSYLASSAMVGQASMA--------LHRPDLTYAELVSL 287 Query: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQA 363 A +G+ +A ++ G +G ++ ++ + P K++I ++ V+ + + Sbjct: 288 AHQGERVASRVVRDAGYALGTLIGLVTAITAPSKVIISGEGVTMVPLVMDVVQERASE-V 346 Query: 364 LPAYSQHISVESTQFSNQGTMAGAALVK-DAMYNGSL 399 + +E +F GAA++ + ++ Sbjct: 347 EHWAVPDVPIEIAEFGFVEWARGAAVIALQQLLEAAI 383 >UniRef50_UPI0001789593 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789593 Length = 320 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 63/307 (20%), Positives = 119/307 (38%), Gaps = 5/307 (1%) Query: 85 WHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFFIRHQKKL 143 + + + I ++ A+ D +++ L+ +++ ID + Sbjct: 2 GYAIGVDIGGTKVQFAVIDRGGEIINRHRVPTEAHKGPEQLMHKVLLGIDMMMKSAGAEG 61 Query: 144 ERLTSIAITLPGIIDTENGIVHRMP-FYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMA 202 E + I I G ID G V D + + Q VY+ +D++ MA Sbjct: 62 E-VQGIGIGSAGQIDFREGTVLYAGDTLPDWTGTAIKRLVTQRYNTRVYVDNDVNVIAMA 120 Query: 203 EALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNH 262 E ++G + + + + + +G V+ G LL E+GH VD G RC CGN+ Sbjct: 121 EKMYGVGKHCDNFVCLALGTGIGGAVMESGRLLRGVFGGAAELGHVSVDINGPRCSCGNN 180 Query: 263 GCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHV 322 GC+E AS I + +S + +A + D A ++ V + Sbjct: 181 GCIELYASGSGIARIGLEMQRDESASYAWRP--NSRDIIRAWHQDDPSATAVMRVVIRAL 238 Query: 323 GRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQG 382 G +A ++ FNP+ ++IG ++++ + I + + + F N Sbjct: 239 GAAVAGYIHAFNPEVVVIGGGVAESGPRFLQELDQEIDARTSSYMRSCCRIMAASFGNDA 298 Query: 383 TMAGAAL 389 + GAA Sbjct: 299 GVIGAAA 305 >UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=A5IKW0_THEP1 Length = 379 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 175/390 (44%), Gaps = 24/390 (6%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + +IK N ++ ++I + P+SR D+S + L P+S+T++ +E+++ ++E+ Sbjct: 1 MKYNSPRIKILNKKSILKVIHENHPISRSDISEVTGLTPSSVTRLTKELIDEGYIREIGT 60 Query: 66 KEAGNRG-RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPL 124 + G R + L + A+ L I + ++ + ++ + Sbjct: 61 MGKNSPGRRRRILLDLRKNAFLSLVFDIGVNITTYGVGFFDGEVEPRGTFNTP-REPVEF 119 Query: 125 LDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 + + ++ ++ I++++PG++D E + P + + + + E L Sbjct: 120 FNIVKEIYERISGEYRISR-----ISLSVPGMVDMEEKKILLAPNL-EWENVSIKELL-- 171 Query: 185 HTGVPVYIQHDISAWTMAEALFGAS-RGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 VPV ++ + +AE R ++ + ++I VGAG++ DG + S + Sbjct: 172 KVDVPVLADNEANLSMLAEKYHSEDLRNVKEAVFIIIREGVGAGLMIDGKIFRGPSFTAG 231 Query: 244 EIGHTQVD-PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 E GH V+ ++C+C N GC E ++S++ +E L + ++ Sbjct: 232 EAGHMTVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKELPGKNA---------IEKFQA 282 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 R D AK I+ ++ + +VN+ NP+ +++G + D ++ D + Q+ Sbjct: 283 LKQRND--AKRILMKFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFLDIVKDFVHQR 340 Query: 363 ALPAYSQHISVESTQFSN-QGTMAGAALVK 391 AL A + + + +T+F N + GAA++ Sbjct: 341 ALKAAVKDLKIRTTEFRNISSNLVGAAVLA 370 >UniRef50_B9JL48 Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JL48_AGRRK Length = 345 Score = 312 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 85/311 (27%), Positives = 143/311 (45%), Gaps = 8/311 (2%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQEL-ALKDDLPLLDRIISHIDQFFIRHQKKLE 144 L+ + E+ AL D L+ + A + ++ +I + L Sbjct: 4 VALAFDLGGTELRAALVDEEGNLLSFSAVPTQAAEGPDAVVRQIEVLAATVLAKTPDLL- 62 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 I I PG +D E G+V P E+PL + L +PV +++D +A + E Sbjct: 63 -PIGIGIGAPGPLDPEAGVVIAAPTLTGWNEVPLADILSSRFQLPVRLENDANAAAVGEW 121 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 +GA RGAR ++ V + +G GVI D +LH EIGH + G+RC+CG GC Sbjct: 122 RYGAGRGARSIVFVTVSTGIGGGVIADSRILHGRRGLAAEIGHMTITNEGERCFCGAVGC 181 Query: 265 LETIASVDSILELAQLRLNQSMSSMLHG----QPLTVDSLCQAALRGDLLAKDIITGVGA 320 E +AS ++ A R +S SML +T + AA GD LA +++ Sbjct: 182 FEAVASGTALGRQATARTRRSDGSMLRKLSANADVTGRHVVDAARNGDALALELLNAEAR 241 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSN 380 +G +++L++P +++G +S D+L I +I +A+PAY + + + + Q Sbjct: 242 WLGIGFTNLLHLYSPDVLVMGGGISHGFDLLHDTIMATICDRAMPAY-RDVPIVAAQLGR 300 Query: 381 QGTMAGAALVK 391 + GAA + Sbjct: 301 HAGLIGAASLI 311 >UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacterium RepID=C6JR29_FUSVA Length = 388 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 77/382 (20%), Positives = 175/382 (45%), Gaps = 17/382 (4%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 ++++ N +R + ++ S++++S+ ++ ++TKI+ L L+ E G Sbjct: 9 EKLRNENRT--FRFLVEVREFSKLEISQYLNISIPTVTKILERFLTNKLIYETGT-NNGK 65 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 GR A+ +A+ + +++ I + L +L K++ + + + + +I+ Sbjct: 66 LGRKAIKYQFNPDAYFSIGIKVEMNHISMVLINLDGKILKQTVVKEEFINSENFVFLVIN 125 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + +F K E + I I LPGI++ EN ++ + + + E +E+ G+P+ Sbjct: 126 ELKKFLWEFD-KKEFIKGIGIVLPGIVNPENNMIKLGGNFSLL-NQDMKE-IEEEFGLPI 182 Query: 191 YIQHDISAWTMAEALFGAS--RGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 +++++ +A + E + S + ++++ V ID +G+G+I + L + EIGH Sbjct: 183 FLENEANAGAIGEYIVNHSGLQTKKNILFVSIDTGIGSGIIVENQLYRGKGNKSGEIGHI 242 Query: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGD 308 + P G +C CG+ GCLE S ++++ + + + + Q G+ Sbjct: 243 PIIPNGDKCACGSEGCLEQYCSNLALMKEFEKEFQ--------CEIKEYEDIFQEKFIGN 294 Query: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 K I+ + + + + N KI+IG +S + P++ + I + + Sbjct: 295 EKGKKILERYTWILALGIKTALMMLNSDKIIIGGKISDYKEYFEPMLKEIIFSNNIFSND 354 Query: 369 QHISVESTQFSNQGTMAGAALV 390 I +E + S+ + GAA + Sbjct: 355 ADI-LEFSSLSDNANLLGAAFI 375 >UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCX5_ACTMD Length = 382 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 159/392 (40%), Gaps = 25/392 (6%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 +++ N+ V I SR ++ L A+++ +V M+ A LV E + G Sbjct: 1 MRRLNSALVLDAIASAPGSSRASVATRTGLTKATVSSLVDRMIGAALVVEGAAEARSGPG 60 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHI 132 R L + H L + + + L DL+ ++ ++ + P L ++ + Sbjct: 61 RRGTALHLSPAGPHGLGVEVGVDYLATCLVDLTGRVRKRWVRDSDNRASSPAL--VLGEV 118 Query: 133 DQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT-----G 187 ++ + I + +PG++++ +G++ P +E+ + L + G Sbjct: 119 AAAVRIATREDVPVGGIGVAVPGLVESASGVLRVAPNL-GWREVDVRGELGRLLGADAGG 177 Query: 188 VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGH 247 +PV + ++ + +AE G + +D + V + +GAG++ D L S EIGH Sbjct: 178 LPVQVGNEANLAALAELWHGDA--PQDFVHVSGEIGIGAGIVVDAGLFEGVSGFGGEIGH 235 Query: 248 TQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRG 307 VDP G RC CG+ GCLE +A D IL A V L Sbjct: 236 LSVDPSGPRCTCGSRGCLERLAGQDEILRAAGAA--------------DVADLLARLDAD 281 Query: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAY 367 D A + +G L+ VNL +++G ++ L P + + + + A Sbjct: 282 DREAVAAVRTAARWLGIALSGAVNLLGLPAVVLGGAYARLEPWLRPTLEAELGGRVVSAA 341 Query: 368 SQHISVESTQFSNQGTMAGAAL-VKDAMYNGS 398 ++V ++ ++ + GAA A+ Sbjct: 342 WSPVAVTASSLGDEAAVRGAATSAVRAILADP 373 >UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGB0_EUBR3 Length = 412 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 83/411 (20%), Positives = 174/411 (42%), Gaps = 27/411 (6%) Query: 5 NQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELE 64 +D +K N + +++ + G +SR D++ L PA++T + +M+EAH++ E Sbjct: 3 KTGISLDSVKNNNKSQILKILQKNGAMSRKDIANQIGLTPAAVTMLCNDMMEAHMILEKG 62 Query: 65 -IKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDL 122 +KE GR V + + + + +S+ I + + + ++ ++VE + Sbjct: 63 EMKEQKRAGRKKVLVDINYDFKYIVSVNIEAVDTSITVTNIRGNVLVETKVHTRTDIEPQ 122 Query: 123 PLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKE-MPLGEA 181 L+ + I + KL + I I +PGI+D NGI Y + + E Sbjct: 123 LFLEELAKEIKLQLWEKELKLSDILGIGICVPGIVDRNNGISIHA--YGIWNNQVKIREI 180 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 LE+ PV +++++ A+ AE L+G + +++ + VG+ ++ D L + Sbjct: 181 LEKQIQCPVILENNVKAFAEAEMLYGVGKYGNNIVFIKWGPGVGSAIVVDNKLYEGNQHN 240 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH ++P G +C CG GCLET S+ ++ + + ++ + +L+ + +L Sbjct: 241 AAEIGHYIIEPDGLKCRCGRQGCLETRVSMFALCDRIKEIYSKENTPVLYEETAGDKNLI 300 Query: 302 QA-------ALRG-------DLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA 347 G D +I+ G + R+ ++ + P ++ + + Sbjct: 301 TRELLTSWVENEGNGYITRMDKTISEILVGAIERMARVAVNVLTILAPDCTIVFGSMFEN 360 Query: 348 ADILFPVISDSIRQQALPAYSQHIS--VESTQFSNQ-GTMAGAALVKDAMY 395 I I Q + + + S++ + G AL+ + Sbjct: 361 TSIYKLFI-----QYCTKYDENYTDKLISRSHLSDKMAYIGGTALIASTYF 406 >UniRef50_D1AY92 Glucokinase, ROK family n=4 Tax=Bacteria RepID=D1AY92_STRM9 Length = 317 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 138/311 (44%), Gaps = 6/311 (1%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFFIRHQKKLE 144 +Y + + + + D + ++ + + ++ + ++ + Sbjct: 3 YYGGIDLGGTNSKIGILDENGNIIYSTIVKTESNLGYKETIKKLSDCLKVGLDENKINYD 62 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 S+ + +PG ++ ++ + + + L E PVYI +D++ T+ E Sbjct: 63 DFISLGMGVPGPTVNKSTVIMWA-NFPWPENLNLANEFENQLSKPVYIDNDVNIITLGEL 121 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 GA++G ++V+ + I +G V+ +G ++ + + EIGH ++ G+ C CG GC Sbjct: 122 WVGAAKGYKNVLGMAIGTGIGGAVVVNGEIISGKNGASGEIGHIPLEKKGRLCGCGKRGC 181 Query: 265 LETIASVDSILELAQLRLNQSMSSMLH----GQPLTVDSLCQAALRGDLLAKDIITGVGA 320 E AS I +A+ RL + ++ML+ + + + + A +GD L+ DI+ Sbjct: 182 FEAYASATGIERIAKDRLEVNKNNMLYNLTKDRDIEAKDVFECAKQGDKLSMDIVEETAE 241 Query: 321 HVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSN 380 ++ + +++ + +++G ++ A + L I + + + +++ ++ + N Sbjct: 242 YLAMGIGTALSILDSDIVVMGGGVALAGEFLTDKIKKYLPDYLMTSIEKNVEIKIAELGN 301 Query: 381 QGTMAGAALVK 391 + GAA + Sbjct: 302 NAGIYGAAYLA 312 >UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X1U5_OCHA4 Length = 417 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 158/391 (40%), Gaps = 26/391 (6%) Query: 7 PGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIK 66 + ++I+ N V ++ + GP+ R+ ++RL L +I IV E++ +L+ +L Sbjct: 30 GKNPERIRDHNRRVVLDVVRRHGPLGRMHIARLTHLTAQAIANIVDELVSENLLMQLGRL 89 Query: 67 EAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLD 126 + RG+P + V E + + + + + DLS K + + + L Sbjct: 90 K-KGRGQPPIQFAVNPEGAMTIGVEMGSTHMVTTVLDLSGKPRTQHVRPIQDVSPERLST 148 Query: 127 RIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT 186 ++ +D RL I + +PG D E + L + Sbjct: 149 QLRKEVDAVKTSFPA---RLLGIGVVMPGPFDIEGMSSVGPTTLPGWSGIDAAAVLSEAC 205 Query: 187 GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 G V +++D +A + E LFGA + + +G G+I DG + EIG Sbjct: 206 GESVLVENDANAAAVGERLFGAGHAISNFAMIYFGAGIGLGMIQDGAPFRGAFGNAGEIG 265 Query: 247 HTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALR 306 H + P G+ C CG GCLET AS+ ++ E + D+L + Sbjct: 266 HIVITPNGRSCACGQKGCLETYASLHTLREKLHAAGI---------EDTDFDALEKLHGN 316 Query: 307 GDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKA--ADIL-----FPVISDSI 359 + + + H+ ++A++ N+ +P+ I++G L A D++ P+ S Sbjct: 317 RNPVLMGWVQEAADHLAPMIAMIENILDPETIILGGMLPDAIIDDLIWHMGGLPISVASR 376 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGAALV 390 R +ALP V Q GAA + Sbjct: 377 RARALP------RVIRGQTGQFTAALGAASL 401 >UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJQ5_CATAD Length = 390 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 97/390 (24%), Positives = 175/390 (44%), Gaps = 14/390 (3%) Query: 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEA-GNRGRPAV 76 AV L+ + GP+SR ++ + +L+PA+IT+ R +L L+ E + + G GRP+V Sbjct: 14 RTAVLALLARRGPLSRAQIAEMLELSPATITQGTRRLLAEGLLVEEAPRPSAGGGGRPSV 73 Query: 77 GLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFF 136 L + + H + ++++ + L + +V + + + + I Sbjct: 74 PLSLVPGSAHTIGIQVAHEHVTGVTSRLDATVVHSFRHAFDPASPDAV-ETLTALIRSEI 132 Query: 137 IRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDI 196 +++ L + + +PGI++ E G + +PL L + GVPV++ +DI Sbjct: 133 EEIERRGLPLAGVGVAVPGIVEPETGTLSMSVRL-GWTGLPLAARLREALGVPVFVDNDI 191 Query: 197 SAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKR 256 SA T AE L+G D + I +G G++ DG + + E GH V P G + Sbjct: 192 SAVTAAERLYGPGADEADFLLAAIGQGIGLGMVLDGAPYRGAAGAAGEFGHMPVQPDGPQ 251 Query: 257 CYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIIT 316 C CGN GCLE++ S +++L A S +D L AA GD A ++ Sbjct: 252 CVCGNRGCLESLVSTEALLRTAHEAGILPAES-------DLDDLGTAARHGDPAAVQLLH 304 Query: 317 GVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVEST 376 +GR LA +VNL P+ ++I ++ D+L + +++ LP + +E Sbjct: 305 NAATLLGRALAGVVNLLGPRSVIIIGEITAIWDLLDDPLHEALLDHLLP-AVRDTRIEVR 363 Query: 377 QFSNQGTMAGAALVKDAMYNGSLLIRLLQG 406 + ++ AA + L +G Sbjct: 364 PWHDEVI---AASAARVVLAAPLAAPRQRG 390 >UniRef50_C8XDB9 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XDB9_NAKMY Length = 417 Score = 310 bits (795), Expect = 7e-83, Method: Composition-based stats. Identities = 77/381 (20%), Positives = 159/381 (41%), Gaps = 13/381 (3%) Query: 28 LGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHY 87 G SR L++ L A+++ +V E++E LV E E GRP + ++ + + Sbjct: 34 GGARSRARLAQDTGLTKATVSSLVAELIERSLVVE-GTVERSGLGRPGRAVELDPDGVRF 92 Query: 88 LSLRISRGEIFLALRDLSSKLVVEES--QELALKDDLPLLDRIISHIDQFFIRHQKKLER 145 L + + +I + DL +++ + + +A L + ++++ Sbjct: 93 LGIELQVDDISGMVLDLPGRVLARQRLSRSMAELGPARALGEVADLARSLVAEAGSRVDQ 152 Query: 146 LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT---GVPVYIQHDISAWTMA 202 + S+ + +PG+ID + G++ P +++ + L + + +D + MA Sbjct: 153 VQSLHLAVPGLIDADAGMLALAPNLH-WRDVDIVHTLMGRLQWNDARIGVDNDANMGAMA 211 Query: 203 EALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNH 262 S G+++++ + VGAG+I DG ++ + E+GH + ++C CG Sbjct: 212 HYATSDSSGSQNLLYLAGAVGVGAGMIVDGRIVRGAAGFAGEVGHIALGSPDRQCGCGRR 271 Query: 263 GCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHV 322 GC ET S+ ++L+ + L + + + Q A GD D I + Sbjct: 272 GCWETAVSLSALLDAVCGDAISKHPADLRAELVRIK---QRAADGDRQVLDAIAEQAHWL 328 Query: 323 GRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQG 382 G ++++ N+ NP ++G S + + + +R + L VE ++ Sbjct: 329 GIGMSVLSNILNPDTFVLGGHFSVLREYIREPVLAELRSRVLAGAVS--RVEFSELEFDA 386 Query: 383 TMAGAALV-KDAMYNGSLLIR 402 GAA V + L R Sbjct: 387 ASLGAAHVGIAQLIADPTLAR 407 >UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID=A6WEF3_KINRD Length = 390 Score = 310 bits (795), Expect = 7e-83, Method: Composition-based stats. Identities = 93/390 (23%), Positives = 158/390 (40%), Gaps = 32/390 (8%) Query: 3 AENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQE 62 Q + N V L+ GPVSR DL+R L ++++IV ++L LV E Sbjct: 24 RPRAKVLPSQARAHNRSVVLGLLFHEGPVSRADLARATGLTRVTVSEIVGDLLTDGLVAE 83 Query: 63 LEIKEAGNRGRPAVGLVVETEAWHYLSLRISR-GEIFLALRDLSSKLVVEESQELALKDD 121 L ++ G G+PA+ + + H +++ + R +A+ DLS +V E + ++ Sbjct: 84 LGLRPEGRVGKPAMMVGLRAAEHHVVAVDLQRLPAARVAVLDLSGTVVSETTADVTGLRG 143 Query: 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEA 181 + +R+ + I PGI+D G V + +PL E Sbjct: 144 EDATAALEDLCRAGIAGAP---QRVVGVGIGTPGIVDA-TGRVVESARL-GWRSVPLAER 198 Query: 182 LEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 L GV V++ +D +AE +G + + + V + VGAG++ DGHL+ + Sbjct: 199 LSHALGVGVHVANDADTAALAEFTYGEASPSG-FMVVAVGQGVGAGLVLDGHLVRGHRLA 257 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 EIGH VDP G+ C CG GCLETI + + R Sbjct: 258 AGEIGHLTVDPRGEPCECGRRGCLETIVAPAYLDRTLAGRTPARR--------------- 302 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + + G +G +LA +V + +++++ P L ++++ Sbjct: 303 ----------RSALRDAGHRLGAVLAPVVAALDLEEVILTGPAELLDGPLLEAARETVQT 352 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALVK 391 LP V Q G + GAA + Sbjct: 353 TCLPTEGTAPQVRMAQLGANGVLQGAAALV 382 >UniRef50_A5VW31 ROK family protein n=38 Tax=Rhizobiales RepID=A5VW31_BRUO2 Length = 402 Score = 309 bits (794), Expect = 9e-83, Method: Composition-based stats. Identities = 88/375 (23%), Positives = 156/375 (41%), Gaps = 29/375 (7%) Query: 16 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR---- 71 + G V +++ GP SR +L+R L+ ++T + ++L+ + E + + Sbjct: 3 IHLGMVLKILRDEGPQSRAELARRCGLSATTLTHLTAQLLKDGCIAETDAPVLPSGSPMP 62 Query: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD-DLPLLDRIIS 130 GRP V + + A + + I + +A+ DL+++LV + + A D L L + Sbjct: 63 GRPPVSVRLVPSAHYVAGVYIGAEAVQVAICDLTAQLVTSAAFDHAANDNPLKLTHQTAD 122 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPV 190 + L L I + +PG +D +++ +A+E +P Sbjct: 123 VLRNLVQAKGISLGSLVGIGMGVPGPVDQVRRRNLLSIN-TGWRDVAFADAMEAELNIPT 181 Query: 191 YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV 250 ++H+++A +AEA +G +G V+ V + ++ DG G VE+GH Q+ Sbjct: 182 VVEHNVTAMALAEAHYGIGQGCPAVLYVYLGTG----LVVDGMPFRPGGHGAVELGHIQI 237 Query: 251 DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLL 310 DP G C CGN GCLET S + + R S +L AAL + Sbjct: 238 DPQGALCACGNRGCLETFVSERVL----RERGAGSAEPLL------------AALARNPT 281 Query: 311 AKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQH 370 V H LA VNL P I++G ++A + + + + + LP Sbjct: 282 LH---DEVAGHFTTALANAVNLLTPDLIVLGGHFAEAPEAFYARLRCDLPPRVLPHMRDV 338 Query: 371 ISVESTQFSNQGTMA 385 + +E F N Sbjct: 339 LRIERGGFGNNAGAV 353 >UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESH3_9FIRM Length = 400 Score = 309 bits (794), Expect = 9e-83, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 164/388 (42%), Gaps = 15/388 (3%) Query: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 + + IK N +Y+LI+ +SR ++ +L+ +++ +V EM++ V + Sbjct: 2 KKYNQLLIKDNNKKQIYQLIEDFPGISRTQIAEQLKLSKTTVSALVDEMMQEMFVIDEGA 61 Query: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 E+ +GR L V + + L + + +AL D + +V +E +K+ L Sbjct: 62 SESNRQGRKPNSLTVNNSTNYVIVLNWHKDNLEIALVDSAMNIV--LCREYDMKNTGDAL 119 Query: 126 DRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYE-----DVKEMPLGE 180 + + ++F + + + + +PG+ID ++ + + + K L Sbjct: 120 AELKGYFEEFREAQCVDIH-VMGVCVIVPGMIDEKHDEIISVV-LPTESQGNYKISRLRS 177 Query: 181 ALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSS 240 L+ G P+ I +D + + AE FG G + I + I+ VGA +I DGHLL S Sbjct: 178 MLD---GYPLAILNDTACFAYAETAFGKLDG-ENYIYININDGVGAAIIHDGHLLSGASG 233 Query: 241 SLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL 300 + GH VD G C CGN GCLE ++ L + S G+ L L Sbjct: 234 MATQFGHFSVDRNGYPCACGNRGCLENQIGELALPRLFEEFGLDVPKS--SGEKLLFKDL 291 Query: 301 CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIR 360 D A +++ + L + LF+P+ ++IG K D ++ ++ Sbjct: 292 AALVRAEDEDALKLMSYMAEDFAYALCNAITLFHPELVIIGGIGRKLGDRFLELLKGKMQ 351 Query: 361 QQALPAYSQHISVESTQFSNQGTMAGAA 388 Q + + V T+ + GAA Sbjct: 352 QFGFRQFVSDVDVVYTKLGEASVVRGAA 379 >UniRef50_C2BRU2 Transcriptional regulator n=3 Tax=Mobiluncus RepID=C2BRU2_9ACTO Length = 403 Score = 309 bits (794), Expect = 9e-83, Method: Composition-based stats. Identities = 87/388 (22%), Positives = 173/388 (44%), Gaps = 14/388 (3%) Query: 1 MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLV 60 M PG ++ N V I G +S+ ++SR LAPA+++ IVRE+ EA ++ Sbjct: 6 MENLLGPGSPSSLRVANQKRVLSAIIDAGGISQAEISRRTGLAPATVSNIVRELTEAEIL 65 Query: 61 QELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKD 120 + E GR + E + + + + R ++ + + L ++V + L + Sbjct: 66 RLAEAAS----GRRGNTIAFAPEIGYAMGVSLEREQVRVGIVTLDHEIVDTQVIPLPPEA 121 Query: 121 DLPLLDRI-ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLG 179 + + + ++ D + ++ + I + + ++ + + + + L Sbjct: 122 NATINKEMSVALFDSMMAAKGLENAQIVAGCIVVADAVRSDGRMSNYTSMIPGLNGINLE 181 Query: 180 EALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGS 239 + ++ + P+ ++D +A +AE ++G ++ D + V +GAG++ G +L+ Sbjct: 182 DIAQEVSPFPILTENDANAGALAEHMWGVAKDVDDFVYVEASSGIGAGIMAGGKILYGTG 241 Query: 240 SSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDS 299 EIGH + + + C CG GCLE IASV +I+ + L T+ Sbjct: 242 GISGEIGHFPIPSHHELCKCGGSGCLEMIASVSAIMASLR---------SLEIPVHTLRD 292 Query: 300 LCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSI 359 L + GD+ I G +G +LA + N+ NP+ I+IG LS A + I ++I Sbjct: 293 LYRLIEEGDVRVTRRIQEAGRAIGYVLAQVCNILNPKMIVIGGELSFAGESFLNQIRETI 352 Query: 360 RQQALPAYSQHISVESTQFSNQGTMAGA 387 Q ALP + ++ + + + GA Sbjct: 353 NQFALPDCAADTTLRLSALGSSAPLRGA 380 >UniRef50_C3QK14 ROK family transcriptional repressor n=13 Tax=Bacteroidales RepID=C3QK14_9BACE Length = 323 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 76/320 (23%), Positives = 150/320 (46%), Gaps = 3/320 (0%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALK-DDLPLLDRIISHIDQFFIRHQKKLE 144 + + + + + AL D + ++ ++++ I++ Q+K Sbjct: 5 YAIGIDLGGTSVKYALIDNEGVFYFQGKLPSKADVSAEAVIGQLVTAINEVKAFAQEKGY 64 Query: 145 RLTSIAITLPGIIDTENGIVHR-MPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAE 203 ++ I I PGI+D N IV + + L + +E TG+P + +D + + E Sbjct: 65 KIDGIGIGTPGIVDGTNRIVLGGAENINGWENIHLADRIETETGLPALLGNDANLMGLGE 124 Query: 204 ALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHG 263 ++GA +GA V+ + + +G V+ DG L + ++ E+GH + G+ C CG+ G Sbjct: 125 TMYGAGQGATHVVFLTVGTGIGGAVVIDGKLFNGYANRGTELGHVPLIANGEPCACGSVG 184 Query: 264 CLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVG 323 CLE AS +++ R+ + S + + + + + + +GD +AK + +G Sbjct: 185 CLEHYASTSALVRRFSQRIIDAGISYPN-EEINGELIVRLYKQGDPIAKISLEEHCDFLG 243 Query: 324 RILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGT 383 +A +N+F+PQKI+IG LS+A D +S+ R A+P + + + + N+ Sbjct: 244 HGIAGFINIFSPQKIVIGGGLSEAGDFYIQKVSEKARSYAIPDCAVNTQIIAAALGNKAG 303 Query: 384 MAGAALVKDAMYNGSLLIRL 403 GAA + + LI+L Sbjct: 304 SIGAASLVFTQLSAPNLIKL 323 >UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus faecalis RepID=C0X1R1_ENTFA Length = 388 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 158/390 (40%), Gaps = 19/390 (4%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 I++ N + I + +SR +LS++ L AS++ I +++ + E I EA NRG Sbjct: 8 IREQNEAQILNQIIKHREISRAELSKITSLNKASVSSITNKLINDGFIIEKRIGEATNRG 67 Query: 73 RPAVGLVVE-TEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISH 131 R + L + + +++ + I AL L K + + + D I Sbjct: 68 RKPIMLTFNGSSSALVIAIDLGYNYIDGALASLDGKEIHRVQLIDTYVNKKNVQDLIHKV 127 Query: 132 IDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVY 191 +Q + + I L G + N I+ D+ E+ L E L Q PV+ Sbjct: 128 FNQLTSDCPHTHYGIVGMTIALQGQV-LNNKIISTSYN--DLAEINLVEMLNQEYNFPVF 184 Query: 192 IQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVD 251 +Q++ + + E F + ++ + + +G G++ +G L ++GHT + Sbjct: 185 LQNEANLSALGEYTFSS--DIENLASISLHSGIGVGLVKNGKLDVGNKGYAGQLGHTILF 242 Query: 252 PYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLA 311 P G++C CGNHGCLE S I + + D + + Sbjct: 243 PNGRKCTCGNHGCLEKYCSTQVIYHEISKEK--------NLNKINSDVVSILYNNKESKV 294 Query: 312 KDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHI 371 +I ++ + + L+ P+ ++ SPL+K + +I ++ Q +++ + Sbjct: 295 VKMIEQYAYYLSIGVNNAIMLYAPELVIFNSPLTKKIPDIINIIQRNLNNQ----FTKDV 350 Query: 372 SVESTQFSNQGTMAGA-ALVKDAMYNGSLL 400 V ++ ++GA +L N L Sbjct: 351 LVINSPIEWNPVISGAISLSIQKFLNIEQL 380 >UniRef50_C0W864 Rok family transcriptional regulator n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W864_9ACTO Length = 401 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 91/402 (22%), Positives = 174/402 (43%), Gaps = 16/402 (3%) Query: 13 IKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRG 72 ++ +N + R + P SR +L R L+ A+++ +V E+ LV E +GN G Sbjct: 1 MRISNMSLILRHLQAGPPCSRTELVRQTGLSKATVSTLVAELCARGLVSEGAPDMSGNVG 60 Query: 73 RPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEES--QELALKDDLPLLDRIIS 130 RP+ L + +A + I + L + DL+ ++V +ES + ++D++ + Sbjct: 61 RPSTALQIAAQAVAGVGAEIGIDSLLLTVVDLAGRVVTQESCLIADPARSFTAVIDQLSA 120 Query: 131 HIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHT--GV 188 + + + + + + + G +D +G V + PL EAL + Sbjct: 121 LLTAQLEKLRSQGVAVLEVVVAQTGALDYTSGTVRFSSSL-GWHDAPLLEALRSALARDL 179 Query: 189 P-------VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSS 241 P + +++D +A A +G R ++ + VGAG+I DGHLL S Sbjct: 180 PEDAALPELAMENDAKLAALAAYGDYARKGVRHLLYLSGGEGVGAGIIADGHLLRGWYGS 239 Query: 242 LVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLC 301 E+GH V+ G+ C CG GC ET+ + S+ A + + L Sbjct: 240 TGEVGHMPVETDGQVCRCGRRGCWETLIGLHSL--TAIYPPQDPVHDDARSLVSRIAMLR 297 Query: 302 QAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ 361 + GD + + + + R LAI+V++ NPQ I++ L+ D+L + S+ Sbjct: 298 ERFDAGDQVLIERLAQAQHDLERGLAILVDVLNPQVIVLSGWLAAFDDVLLAPTAASLEA 357 Query: 362 QALPAYSQHISVESTQFSNQGTMAGAALV-KDAMYNGSLLIR 402 + L + + +++ GAALV + + +++ Sbjct: 358 RRL-DDRPAVHLLASRLGPWAPSLGAALVSLEPVLADPTVLQ 398 >UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WP29_ACTMD Length = 410 Score = 308 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 163/388 (42%), Gaps = 25/388 (6%) Query: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 ++ N V R + L P +++ L+R L+ A+++ +V + + V E++ E Sbjct: 21 SSVRALNTRRVLRAVMVL-PATQVQLARRTGLSQATVSGVVGRLQQEG-VVEVDEGEGER 78 Query: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEE--SQELALKDDLPLLDRI 128 R + V + + + + +ALR + ++ V+ + ++ + +DD + Sbjct: 79 GKR----VRVAPMRGAAVGIEVGHDRLIVALRRIDNEEVLHQGGNRLVVGRDDRAWVGEA 134 Query: 129 ISHIDQFFIRHQKKLERLTSIAITLPGIIDTENGIVHRMPF-----YEDVKEMPLGEALE 183 + ID + SI + LP +D G V++ E Sbjct: 135 VRLIDDLLESTGMVAADVVSIGLGLPAAVDPRRGRVNQSVTAMKEDLRG----NPATWFE 190 Query: 184 QHT-GVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSL 242 +H GVPV + ++ + E +G R A ++ V +GAG++ G + Sbjct: 191 EHYPGVPVVVDNEANFAAYGEYTYGVGRDAEVLLFVKASTGIGAGLVIGGTVFRGRHGFA 250 Query: 243 VEIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQ 302 E+GH +DP G C CGN GCLET+ S ++E + + P+T+ L + Sbjct: 251 GEVGHLTMDPNGLVCRCGNRGCLETLVSGPRLVEEVRQAYRGHRVDL----PMTLAGLIE 306 Query: 303 AALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQ 362 A D + ++ G ++G LA + N+ NP +++G L +A D++ + + + Sbjct: 307 RARAHDPVCVRVLQDAGRNIGLALARVCNIVNPDLVVLGGELGEAGDLVRKHAARDLERN 366 Query: 363 ALPAYSQH---ISVESTQFSNQGTMAGA 387 L +H + V ++ GA Sbjct: 367 VLTGMLEHEHPVVVRVSELGLLAGPRGA 394 >UniRef50_B0MNG8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MNG8_9FIRM Length = 316 Score = 308 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 71/312 (22%), Positives = 149/312 (47%), Gaps = 8/312 (2%) Query: 86 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD-LPLLDRIISHIDQFFIRHQKKLE 144 +Y+ + I I + D +++LV + S + D +L II ++Q + ++ Sbjct: 3 YYIGVDIGGTNIKAGVVDENAQLVSKISLKTNAADGYKSVLAVIIDAVEQAVQLSGEDID 62 Query: 145 RLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEA 204 R+ +I + PG +D ENG V + +PL + L ++ G + +++D + E Sbjct: 63 RIKTIGVGCPGTMDNENGTVLYSNNLH-WENVPLAKDLAEYFGKRIILENDANVAAYGEY 121 Query: 205 LFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGC 264 L GA++GA++ + + + VGAG+I +G + +++ EIGHT ++ G C CG +GC Sbjct: 122 LAGAAKGAKNAVVLTLGTGVGAGIIINGEIYSGSNNAGGEIGHTVIEVDGAPCTCGRNGC 181 Query: 265 LETIASVDSILELAQLRLNQSMSSMLH-----GQPLTVDSLCQAALRGDLLAKDIITGVG 319 E +S ++ + + + + S LH ++ + AA GD ++++ Sbjct: 182 FEAYSSATGLVRMTREMIEKYPSGRLHEMVDRDGKISARTAFNAAKLGDPEGREVVDKYI 241 Query: 320 AHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPA-YSQHISVESTQF 378 ++ + ++N+F P + IG + D L + I +Q +++ + Sbjct: 242 KYLACGITNVINVFQPDILCIGGGVCNEGDNLLIPLKALIAKQIYSKNNAKNTEIVICTL 301 Query: 379 SNQGTMAGAALV 390 +N+ M G+A++ Sbjct: 302 ANEAGMIGSAML 313 >UniRef50_A3TZT8 ROK family protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TZT8_9RHOB Length = 381 Score = 308 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 166/378 (43%), Gaps = 22/378 (5%) Query: 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNRGRPAVGL 78 + + + GP+SR DL R L+ A +TK+ +M+ ++++ E + GRP V L Sbjct: 6 AEILKTLRDKGPLSRADLVRATGLSSAGVTKLTAQMIVDGVLRQSRAVEEKSIGRPPVTL 65 Query: 79 VVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDD-LPLLDRIISHIDQFFI 137 V+ ++ L + + G + +AL D+ L L +D L+DR+ ++ Sbjct: 66 DVQRQSRFVLGIHLGAGRMSVALSDVGLALRCPRHLSYDLSEDLETLVDRVSRLAEEVID 125 Query: 138 RHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDIS 197 + + + +PG +D + R +++ + E+ G+PV ++H+ + Sbjct: 126 ASGVYRLDILGVGLGVPGSVDPNRRVNVRS-ILTGWQDVAFADVFERKLGLPVIVEHNAT 184 Query: 198 AWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRC 257 A +AEAL GA R A ++ +++ +GAG G VEIGH V+P G+ C Sbjct: 185 AMAVAEALHGAGRDAESILYLLLGKGIGAGFAQTGA---GARCGAVEIGHIVVEPGGRPC 241 Query: 258 YCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITG 317 CG GCLE S + + +++ + + + A D A Sbjct: 242 LCGGQGCLERFFSEEPLRKMSGEKGDDHS-----------QMIDAAMQSPDWSATYA--- 287 Query: 318 VGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQ 377 ++ + L+ V L P++I++G L+ A D + + + +P + + +E + Sbjct: 288 ---YLLQALSTTVTLMAPERIVLGGFLNAAPDRFVASLKRDLAPRVMPQQRERLRIERSS 344 Query: 378 FSNQGTMAGAALVKDAMY 395 S + GAA + + Sbjct: 345 LSEPVGVQGAATIALEEF 362 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.191 0.600 Lambda K H 0.267 0.0586 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,260,172,857 Number of Sequences: 3077464 Number of extensions: 206343259 Number of successful extensions: 657724 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 4262 Number of HSP's successfully gapped in prelim test: 2061 Number of HSP's that attempted gapping in prelim test: 639189 Number of HSP's gapped (non-prelim): 7489 length of query: 406 length of database: 1,040,396,356 effective HSP length: 131 effective length of query: 275 effective length of database: 637,248,572 effective search space: 175243357300 effective search space used: 175243357300 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 95 (40.7 bits)