Phyre 2 alignment of P08339 with d1m06f_

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Job Description | P08339
Confidence | 7.02% | Date | Thu Jan 5 11:01:11 GMT 2012
Rank | 12 | Aligned Residues | 20
% Identity | 55% | Template | d1m06f_
SCOP info | Nucleoplasmin-like/VP (viral coat and capsid proteins) | ssDNA viruses | Microviridae-like VP
Resolution | 3.50

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Q | Y | D | K | L | H | R | V | P | F | R | S | P | E | L | R | L | D | S | G | P | G | Y | T | T | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | Y | H | D | L | H | G | F | P | F | . | . | . | . | . | . | L | D | D | A | P | G | T | S | T | G
Template Known Secondary structure |  | G | G | G | G |  | T | T |  |  | S | . | . | . | . | . | . |  | S | S |  | T | T | T | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 362 | . | . | . | . | . | . | . | 370 | . |  |  |  |  |  |  | . | . | . | . | . | . | . | . | 380 | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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