BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (306 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella... 516 e-145 UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacte... 441 e-122 UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria Re... 405 e-112 UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aph... 343 5e-93 UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aph... 325 2e-87 UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacte... 313 4e-84 UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 310 5e-83 UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteob... 307 3e-82 UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteo... 306 5e-82 UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=... 306 8e-82 UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacter... 303 4e-81 UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacte... 303 7e-81 UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteob... 302 1e-80 UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteob... 298 2e-79 UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular or... 291 2e-77 UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacter... 290 3e-77 UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivib... 281 3e-74 UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Ta... 278 2e-73 UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 274 3e-72 UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas ... 272 8e-72 UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacil... 267 4e-70 UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobaci... 266 7e-70 UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp... 261 3e-68 UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methyl... 256 5e-67 UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacter... 254 2e-66 UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2... 253 6e-66 UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacte... 252 1e-65 UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidami... 244 2e-63 UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n... 244 3e-63 UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteob... 243 7e-63 UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified... 241 2e-62 UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteri... 239 9e-62 UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella ... 236 6e-61 UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria Re... 236 6e-61 UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria Rep... 236 7e-61 UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromon... 234 4e-60 UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine s... 233 9e-60 UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium oc... 229 9e-59 UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas... 228 3e-58 UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales... 226 5e-58 UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella... 224 4e-57 UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteob... 222 1e-56 UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales R... 219 1e-55 UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteri... 218 2e-55 UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 216 8e-55 UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibri... 216 1e-54 UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine syn... 215 1e-54 UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Te... 213 7e-54 UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus... 211 2e-53 UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collins... 211 3e-53 UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium Rep... 208 2e-52 UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister in... 207 3e-52 UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium... 206 6e-52 UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae... 206 6e-52 UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter ... 205 1e-51 UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundu... 205 1e-51 UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidip... 204 2e-51 UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogace... 204 3e-51 UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcu... 202 1e-50 UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ell... 199 8e-50 UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis v... 197 3e-49 UniRef50_C3WFS8 D-alanine-D-alanine ligase n=6 Tax=Fusobacterium... 197 3e-49 UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 196 7e-49 UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria Re... 195 2e-48 UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular o... 195 2e-48 UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collins... 194 2e-48 UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostri... 194 3e-48 UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteo... 191 3e-47 UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clost... 191 3e-47 UniRef50_A6CDT2 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 191 4e-47 UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia ... 190 4e-47 UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrob... 190 5e-47 UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes R... 190 6e-47 UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus P... 190 6e-47 UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria ... 189 7e-47 UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales ... 189 1e-46 UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetell... 189 1e-46 UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobact... 189 1e-46 UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizo... 188 2e-46 UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira b... 188 2e-46 UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteo... 188 2e-46 UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 187 4e-46 UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobact... 187 5e-46 UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriac... 186 6e-46 UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacte... 186 8e-46 UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrob... 186 8e-46 UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirill... 184 2e-45 UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4... 184 2e-45 UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga ole... 184 4e-45 UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomona... 184 4e-45 UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae Re... 184 4e-45 UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira R... 183 5e-45 UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriac... 183 6e-45 UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera ... 182 9e-45 UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 182 1e-44 UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia R... 182 2e-44 UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium c... 182 2e-44 UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatron... 181 2e-44 UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci R... 181 3e-44 UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia R... 181 3e-44 UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia ... 181 3e-44 UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus S... 181 4e-44 UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira ... 181 4e-44 UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bron... 179 7e-44 UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine syn... 179 9e-44 UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirill... 179 1e-43 UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria Rep... 178 2e-43 UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria R... 178 2e-43 UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevib... 178 2e-43 UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovi... 178 3e-43 UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pa... 177 4e-43 UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 176 8e-43 UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacill... 176 1e-42 UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdema... 175 2e-42 UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteob... 175 2e-42 UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobiu... 174 3e-42 UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexi... 174 3e-42 UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfov... 174 4e-42 UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root Re... 174 4e-42 UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetal... 173 5e-42 UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 173 6e-42 UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus ... 173 6e-42 UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes R... 173 8e-42 UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C... 173 8e-42 UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomyceta... 172 9e-42 UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerot... 172 1e-41 UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=... 172 1e-41 UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostri... 172 1e-41 UniRef50_Q8RDQ4 D-alanine--D-alanine ligase n=10 Tax=Fusobacteri... 172 2e-41 UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacill... 172 2e-41 UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria Rep... 172 2e-41 UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomyceta... 171 2e-41 UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus... 171 3e-41 UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria Rep... 171 3e-41 UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema Re... 171 3e-41 UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsiea... 171 3e-41 UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine s... 171 4e-41 UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum... 171 4e-41 UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=... 171 4e-41 UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacter... 170 5e-41 UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillu... 170 6e-41 UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli Re... 170 6e-41 UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium ... 170 7e-41 UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibr... 169 1e-40 UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecali... 169 2e-40 UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonel... 169 2e-40 UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocyst... 168 2e-40 UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces ... 168 3e-40 UniRef50_Q6A5C1 D-alanine--D-alanine ligase B n=4 Tax=Propioniba... 167 3e-40 UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteob... 167 4e-40 UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistip... 167 4e-40 UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 T... 167 4e-40 UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicro... 167 5e-40 UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bactero... 167 6e-40 UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachl... 166 6e-40 UniRef50_B1JC77 D-alanine--D-alanine ligase n=2 Tax=Pseudomonas ... 166 9e-40 UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycet... 166 1e-39 UniRef50_UPI0001AF4ABE D-alanine--D-alanine ligase n=1 Tax=Salmo... 166 1e-39 UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabact... 165 2e-39 UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9... 165 2e-39 UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostoc... 165 2e-39 UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID... 165 2e-39 UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimo... 164 2e-39 UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora ... 164 3e-39 UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 164 3e-39 UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermoth... 164 4e-39 UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified E... 164 5e-39 UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia Re... 163 6e-39 UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aerom... 162 1e-38 UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacil... 162 2e-38 UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermob... 161 2e-38 UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycet... 161 2e-38 UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 161 3e-38 UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cell... 160 4e-38 UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 160 4e-38 UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter s... 160 5e-38 UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiace... 160 6e-38 UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcale... 160 7e-38 UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacill... 160 7e-38 UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces ... 160 8e-38 UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT 159 1e-37 UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacte... 158 2e-37 UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus... 158 2e-37 UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN 158 3e-37 UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=D... 158 3e-37 UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteria... 157 4e-37 UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerof... 157 5e-37 UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular or... 157 5e-37 UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi ... 157 6e-37 UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax... 156 7e-37 UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospor... 156 9e-37 UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepI... 156 1e-36 UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=... 155 1e-36 UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coproco... 155 2e-36 UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidete... 155 2e-36 UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranu... 154 5e-36 UniRef50_D0RN14 D-alanine--D-alanine ligase B (D-alanylalanine s... 153 7e-36 UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteri... 152 1e-35 UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria Re... 152 2e-35 UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiace... 152 2e-35 UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio... 152 2e-35 UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizob... 151 3e-35 UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria Re... 151 3e-35 UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma w... 150 4e-35 UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia m... 150 5e-35 UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis... 150 5e-35 UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein... 150 6e-35 UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaprot... 149 9e-35 UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacter... 149 9e-35 UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacte... 149 1e-34 UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia Re... 149 1e-34 UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothr... 148 2e-34 UniRef50_Q60GK8 D-alanyl-D-alanine ligase n=2 Tax=Streptomyces R... 148 2e-34 UniRef50_B9KHS3 D-alanine--D-alanine ligase n=5 Tax=Anaplasma ma... 147 5e-34 UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Rumin... 145 1e-33 UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=... 145 2e-33 UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 144 3e-33 UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 144 3e-33 UniRef50_C8W9G2 D-alanine--D-alanine ligase n=2 Tax=Atopobium Re... 144 4e-33 UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Strep... 144 5e-33 UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales ... 144 5e-33 UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaero... 143 6e-33 UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacter... 143 7e-33 UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacill... 142 2e-32 UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworth... 141 3e-32 UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococ... 141 3e-32 UniRef50_C5C6M9 D-alanine--D-alanine ligase n=4 Tax=Actinomyceta... 140 4e-32 UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma ce... 140 8e-32 UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomona... 139 9e-32 UniRef50_A6TSD6 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus... 139 1e-31 UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella R... 139 1e-31 UniRef50_Q1QNT9 D-alanine--D-alanine ligase n=13 Tax=Alphaproteo... 139 1e-31 UniRef50_B0RDP5 D-alanine--D-alanine ligase B n=4 Tax=Actinobact... 138 2e-31 UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q87... 138 2e-31 UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiale... 138 2e-31 UniRef50_C0VTV5 D-alanyl-alanine synthetase A n=2 Tax=Corynebact... 135 3e-30 UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas... 134 3e-30 UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilu... 134 4e-30 UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacte... 134 4e-30 UniRef50_A9BI46 D-alanine--D-alanine ligase n=1 Tax=Petrotoga mo... 129 1e-28 UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteo... 129 1e-28 UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermac... 129 1e-28 UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes Re... 129 2e-28 UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla ... 128 2e-28 UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae... 128 3e-28 UniRef50_Q5G7J6 Vancomycin resistance protein C1 (Fragment) n=1 ... 127 3e-28 UniRef50_P55650 Uncharacterized protein y4sG n=3 Tax=Rhizobiales... 125 2e-27 UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bactero... 124 3e-27 UniRef50_A6LJ57 D-alanine--D-alanine ligase n=2 Tax=Thermotogace... 123 6e-27 UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacill... 123 9e-27 >UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RepID=B5FI74_SALDC Length = 285 Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust. Identities = 258/306 (84%), Positives = 273/306 (89%), Gaps = 21/306 (6%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M DKIAVLLGGTSAER+VSLNSGAAVLAGLREGGIDA+PVDP+EVDV QLK+MGFQKVFI Sbjct: 1 MADKIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGRG VMASALSMDKLRSKLLWQGAGLPVAPWVALTRA Sbjct: 61 ALHGRG---------------------VMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 99 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 EFEKGLS++Q A ISALGLP+IVKPSREGSSVGM+KVV ENALQ AL LAFQHD+E+LIE Sbjct: 100 EFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIE 159 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 KWL GPEFTVAI+GEEILPSIRIQP+GTFYDYEAKYLSDETQYFCPAGL+ASQEA LQ+L Sbjct: 160 KWLCGPEFTVAIVGEEILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSL 219 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 VL+AW LGC GWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR Sbjct: 220 VLQAWKALGCTGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 279 Query: 301 ILELAD 306 ILELAD Sbjct: 280 ILELAD 285 >UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacteria RepID=DDL_YERP3 Length = 306 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 222/306 (72%), Positives = 252/306 (82%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M +K+AVLLGGTSAEREVSL SG AVLAGL+E GIDAY VD K+ VTQLK GF KVFI Sbjct: 1 MAEKVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVDTKDFPVTQLKEQGFDKVFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGRGGEDGTLQG+LE + LPYTGSGVMASAL+MDKLR+KL+WQ GLP++P+VAL R Sbjct: 61 ALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQ 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 +FE ++ +A ++ LGLP+IVKPS EGSSVGMSKV + LQ AL AFQHD +VLIE Sbjct: 121 QFETLSPEELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIE 180 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 KWLSGPEFTVAILG+E+LPSIRIQP G FYDY+AKYLSD+TQYFCP+GL E L AL Sbjct: 181 KWLSGPEFTVAILGDEVLPSIRIQPPGVFYDYDAKYLSDKTQYFCPSGLSDESEQQLAAL 240 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L+A+ L C GWGR+DVM D DG FYLLE NTSPGMTSHSLVPMAARQ G+SFSQLV R Sbjct: 241 ALQAYHALDCSGWGRVDVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVAR 300 Query: 301 ILELAD 306 IL LAD Sbjct: 301 ILMLAD 306 >UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria RepID=DDL_HAMD5 Length = 320 Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/319 (61%), Positives = 241/319 (75%), Gaps = 14/319 (4%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M +K+AVLLGGTS+ER++SL SG AV+AGLRE GIDA P+D K VT+LK GF K FI Sbjct: 1 MPEKVAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPIDTKNFLVTELKEKGFTKAFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGR GEDG LQ +LE + +PYTGSGVMASAL+MDK RSK+++QGAGLPV+P+VAL R Sbjct: 61 ALHGRDGEDGHLQAVLEFLKIPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNRE 120 Query: 121 E--------------FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDA 166 + +S+K + I+ LGLP+IVKPSREGSS GM+KV + L DA Sbjct: 121 QIWPNVTQNTSNDLLLNNRISNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQLDDA 180 Query: 167 LRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCP 226 L+ A+ +DEE+L+EKW G E TVAILG+ +LPSIRIQ S FYDY+AKY+SD+TQYFCP Sbjct: 181 LKKAWHYDEEILVEKWHFGTELTVAILGDTVLPSIRIQVSDIFYDYQAKYVSDKTQYFCP 240 Query: 227 AGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMA 286 +GL+ QE L L + A+ LGC GWGR+DVMLD +G FYL+E NT+PGMT HSL PMA Sbjct: 241 SGLKQEQEKQLATLSMNAYRALGCDGWGRVDVMLDDEGHFYLMEINTAPGMTDHSLFPMA 300 Query: 287 ARQAGMSFSQLVVRILELA 305 ARQAG SFS+LV +IL LA Sbjct: 301 ARQAGFSFSELVCKILSLA 319 >UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aphidicola RepID=DDL_BUCBP Length = 309 Score = 343 bits (879), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 156/306 (50%), Positives = 216/306 (70%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 +T+KIAVLLGGTS ER +SL SG +L L + GI A +D K+ +TQL F K FI Sbjct: 4 ITEKIAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAIDTKDFPITQLPHQKFTKAFI 63 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGR GEDGT+Q +L+ + +P+TGS + SA+S++K ++KLLWQ LPV P++ + + Sbjct: 64 ALHGRDGEDGTIQSVLKYLNIPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKH 123 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 EF K K IS LGLP+IVKP++EGSS+G++ V + L A + AF D +LIE Sbjct: 124 EFNKKFLQKFKKNISLLGLPIIVKPNQEGSSIGITIVYSYETLYKACKTAFIFDNSILIE 183 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 K++ G E+T++ILG++ILP IRI P TFY+Y +KYLS+ T YFCP+GL +E L+ + Sbjct: 184 KFIYGEEYTISILGKKILPIIRICPENTFYNYNSKYLSNRTTYFCPSGLNKLKELELKKI 243 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L AW + GWGR+DV++D +F+LLEANT PGMT HSL PM+A++AG+S+ LV + Sbjct: 244 TLTAWNIIDGTGWGRVDVIMDYKNKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQK 303 Query: 301 ILELAD 306 ILELA+ Sbjct: 304 ILELAN 309 >UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aphidicola RepID=B6CM19_9ENTR Length = 310 Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 152/303 (50%), Positives = 213/303 (70%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M K+AVLLGG S ER++S++SG AVL L GI AYP D ++ + QLK F +I Sbjct: 1 MKKKVAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFDTRDFPIMQLKKQKFDTAYI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG+GGEDG++QG+LE + +PYTGSG+MAS++S+DK R+KLLW+ AGLPV P V + + Sbjct: 61 ALHGKGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKK 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + K LS L P++VKP+ +GSS+G++ V +N L++A+ +AF + +L+E Sbjct: 121 DILKNLSSLLKKRFFKLDFPLLVKPNNQGSSIGITLVYLKNQLKNAIEVAFNYSNTILVE 180 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 +++ G E+TV+IL E+ILPSI+I FYD+ +KY TQY CP+GL QE L+ + Sbjct: 181 QFIKGTEYTVSILDEKILPSIQIITKNNFYDFASKYQLSSTQYLCPSGLNLKQEKKLKKI 240 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 KAW TLGC G GRIDV+LDS+ +F+LLE NT PGMT+ SL+P++A GMSF +LV+ Sbjct: 241 AKKAWDTLGCNGCGRIDVILDSNNKFWLLEINTIPGMTNRSLLPISANAIGMSFDELVLN 300 Query: 301 ILE 303 IL Sbjct: 301 ILN 303 >UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacteria RepID=DDL_PSYWF Length = 332 Score = 313 bits (803), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 163/301 (54%), Positives = 205/301 (68%), Gaps = 11/301 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AV+ GG S ER VSL+SG AVL L+ GIDA DPK+ DVT+LK+ + +VF LH Sbjct: 37 KVAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFDPKDQDVTELKN--YDRVFNVLH 94 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDG LQG+L+ +GLP TGSGV+ASA+ MDK+R+K LW G GL AP+ L Sbjct: 95 GRGGEDGQLQGLLDWLGLPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVL------ 148 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 G ++ LGLP+IVKP EGSS+GMSKV + L A +A + V+ EKW+ Sbjct: 149 -GADTDWQQIVNTLGLPLIVKPVHEGSSIGMSKVNTLDELPKAYEVAAGCGDVVMAEKWI 207 Query: 184 SGPEFTVAILGEEILPSIRIQPS--GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 +G EFT+ I+ +E P IR+QP+ FYDYEAKY ++TQY P GL A +EA+LQAL Sbjct: 208 TGREFTIVIIDDEAYPVIRLQPADISNFYDYEAKYNRNDTQYHIPCGLSAEEEAHLQALS 267 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L A+ + KGWGRID M D +G F+LLE NT PGMTSHSLVPMAA+ GM+F QL I Sbjct: 268 LAAFKAVDAKGWGRIDAMQDEEGNFWLLEINTVPGMTSHSLVPMAAKARGMNFEQLCWHI 327 Query: 302 L 302 L Sbjct: 328 L 328 >UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_HALHL Length = 304 Score = 310 bits (793), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 158/299 (52%), Positives = 212/299 (70%), Gaps = 11/299 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL+GGTSAER++SL SG A+LA L+ G DA DP++ + L+ G+ VFIALH Sbjct: 12 RVAVLMGGTSAERDISLRSGGAILAALQRCGYDAEAYDPRDRALEGLR--GYDVVFIALH 69 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDGT+QG+L+L+G+PYTGSGV+ SAL MDK R K LWQG+GLP LT Sbjct: 70 GRGGEDGTVQGLLDLLGIPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLT----- 124 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 D+ + + +G PVIVKP+REGSS+GMS+V L +A R+A +D+ VL E W+ Sbjct: 125 ---GDRPVLD-EGVGYPVIVKPAREGSSLGMSRVEGPEELAEAYRVAAAYDDTVLAEAWV 180 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E+TVA+LG++ LPSIR++ F+DY AKY +++T + CP+GL +EA L AL + Sbjct: 181 EGEEYTVALLGDQALPSIRLETPHAFFDYAAKYQAEDTGHHCPSGLGPEEEAELGALCRE 240 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ G GWGR+DVM D+ G+++LLE NT PGMT HSLVP+AA QAG+ F +LV RIL Sbjct: 241 AFIASGGNGWGRVDVMRDTGGRWWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARIL 299 >UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteobacteria RepID=DDL_BURPP Length = 313 Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 158/302 (52%), Positives = 207/302 (68%), Gaps = 4/302 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG SAEREVSLNSG VL GLR+ G+DA+P DP E + LK GF + F ALH Sbjct: 11 KVAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKEEGFVRAFNALH 70 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GE+G +QG L+ G+ YTGSGV+ SAL +DK R+KL+WQ G+P P+ A+ R + Sbjct: 71 GGYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDY 130 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + S + +A+ LGLP+ VKP+ EGSSV + KV + +AL AL A ++D+ V++EK + Sbjct: 131 EARSKEIVAK---LGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKYDKIVVVEKSV 187 Query: 184 S-GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 G E+T I G LP IRI P+G FYDY AKY++++TQY P GL A +EA L+ L Sbjct: 188 EGGGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLAR 247 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +A+ LGC WGR D MLD+DG Y LE NT+PGMT HSL P AAR G+S+ +LVV +L Sbjct: 248 RAFDVLGCTDWGRADFMLDADGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVGVL 307 Query: 303 EL 304 L Sbjct: 308 AL 309 >UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteobacteria RepID=DDL_XANAC Length = 318 Score = 306 bits (785), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 162/304 (53%), Positives = 208/304 (68%), Gaps = 10/304 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVLLGGTS+EREVSLNSG VL LR G+DA PVD L + F +VF LH Sbjct: 18 RVAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLH 77 Query: 64 GR--GGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 G GGEDG +QG++E G+PYTGS V+ SALSMDK+R+K +W GL + A Sbjct: 78 GHNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRY-----AR 132 Query: 122 FEKGLSDKQL-AEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 G S + + A +GLP+IVKP+ EGSSVG+S+V + L++A+ LA ++D +L+E Sbjct: 133 LAAGASAEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGALLME 192 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 + + G E TVA+LG+ LPSIRI P G +YDY AKY++D+TQY CP GLE EA ++ L Sbjct: 193 QLIEGDELTVAVLGDTALPSIRIVPKGQWYDYNAKYIADDTQYLCP-GLEGEAEAQIRQL 251 Query: 241 VLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 L A+ GC+GWGR+DVM D S GQ YLLE NT+PGMTSHSLVP AARQ G+ F LV Sbjct: 252 ALDAFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVW 311 Query: 300 RILE 303 R+LE Sbjct: 312 RVLE 315 >UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=DDL_ACIB3 Length = 308 Score = 306 bits (783), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 159/302 (52%), Positives = 204/302 (67%), Gaps = 11/302 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG SAER VSL+SG AVL L G+ A DP+ VT+L + + + FI LH Sbjct: 9 KVAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTEL--VNYDRAFIVLH 66 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDG +QG+LE + +PYTG+GV SA+ MDK+++K +WQG+ LP AP+ +T+ E Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITK---E 123 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 L D +AE LGLPVI+KP EGSSVGMSKV A+ A QHD V+ EKW+ Sbjct: 124 TDL-DSVIAE---LGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKATQHDAVVMAEKWI 179 Query: 184 SGPEFTVAILGEEILPSIRIQPSG--TFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 +G EFT++ L + LP IR+QP FYDYEAKY ++ +Y P GL ++E LQAL Sbjct: 180 TGREFTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALC 239 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L+A+ +G +GWGRID M D G F+LLE NT PGMTSHSLVP AA+ G SF +L V I Sbjct: 240 LRAFQAVGAEGWGRIDAMQDEQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAI 299 Query: 302 LE 303 L+ Sbjct: 300 LD 301 >UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacteria RepID=DDL_PSEA6 Length = 318 Score = 303 bits (777), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 158/303 (52%), Positives = 209/303 (68%), Gaps = 5/303 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AV+ GG SAEREVSL SG AVL+ L G++A+ DP E ++ QL F +V I LH Sbjct: 19 KVAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFDPAESELHQLVEQKFDRVLIMLH 78 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDG+LQG L+ M +PYTG+GV+ SAL MDK+RSK +WQ GLP A + + +F Sbjct: 79 GRGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFN 138 Query: 124 K-GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 SD +S LG V+VKP++EGSS+GM+KV L A++ AF++D++VL+E++ Sbjct: 139 AANCSDI----MSRLGDLVMVKPAQEGSSIGMAKVSNAQQLAAAIQQAFEYDDKVLLEQF 194 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E+TV++L E +PSI + FYDYEAKY S+ T+YFCP+GL A QE L L L Sbjct: 195 IQGSEYTVSLLNGEAMPSISMSTPRDFYDYEAKYQSNTTEYFCPSGLPAEQEGLLARLAL 254 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ + GWGR+D M D GQFYLLEANT PGMT SLVP+AA+QAG+SF QL + +L Sbjct: 255 DAFDAVAGSGWGRVDFMQDMLGQFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVL 314 Query: 303 ELA 305 A Sbjct: 315 ATA 317 >UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacteria RepID=DDL_MARAV Length = 325 Score = 303 bits (775), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 156/300 (52%), Positives = 208/300 (69%), Gaps = 7/300 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AV +GG SAEREVSL SG AVLA L+ GIDA D + + + F +VFIALH Sbjct: 24 RVAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDIQGCLLRTVDEPDFDRVFIALH 83 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDGTLQ +L G+PYTGS V+ASAL+MDKLR+K +++G GLP + A+T Sbjct: 84 GRGGEDGTLQAILGQAGIPYTGSEVLASALAMDKLRTKYVFEGCGLPTPAFRAMTSVGEA 143 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 +G+ ++ALG P+ VKP+ EGSS+G+ KV + L +A A + D+ VL+E+W+ Sbjct: 144 EGI-------VAALGTPLSVKPAHEGSSIGIRKVNSAAELAEAYEAAARLDDLVLVEQWI 196 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 GPEFTV++L ++ LP+I + FYDY+AKYL+D+T+Y P GL E LQ L L Sbjct: 197 EGPEFTVSLLQDKALPAIGLSTDHAFYDYDAKYLADDTRYRIPCGLAPDDELRLQHLALD 256 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ LGC+ WGR+D+M D G+F+LLE NT PGMT HSLVPMAA+ AG+SF +LVVRIL Sbjct: 257 AFRVLGCRTWGRVDIMQDRAGEFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILR 316 >UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteobacteria RepID=DDL_THICR Length = 313 Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 151/301 (50%), Positives = 207/301 (68%), Gaps = 7/301 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVL+GG +AER+VSL SGA VL L+ G+DA D V + + + FIALH Sbjct: 17 KVAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVTSVAQLVEIAQKYDRAFIALH 76 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +Q +L+ + LPYTGSG+ ASAL+MDKLR+K LW+G GLP ++ ++ Sbjct: 77 GRWGEDGGVQAVLDSLALPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSP---- 132 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 S E L PVIVKPS EGSS+GM KV +ALQ+A+ A Q+D E+LIE+W+ Sbjct: 133 ---SRPLDVETFDLTFPVIVKPSHEGSSIGMRKVDTLDALQEAVDFAQQYDSEILIEQWI 189 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 +G EFT A+L E LP I+++ FYD++AKY S+ T+Y CP GLE ++E +QALVL+ Sbjct: 190 TGREFTCAVLDGEALPMIQLKTDHDFYDFDAKYQSNTTEYLCPCGLEIAEEKRIQALVLQ 249 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ +G + WGR+D+MLD Q +L+E NT PGMT HSLVPMAA+ +SFS+LV++++ Sbjct: 250 AFDAVGARHWGRVDLMLDDQNQPWLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVLKLIS 309 Query: 304 L 304 L Sbjct: 310 L 310 >UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteobacteria RepID=B3PCL8_CELJU Length = 328 Score = 298 bits (762), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 150/306 (49%), Positives = 203/306 (66%), Gaps = 15/306 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++ VL GG SAERE+SL SGAAV+A L + GID +D + + +++ + F+ LH Sbjct: 18 RVGVLYGGLSAEREISLQSGAAVIAALEDAGIDHVAIDVGDNVIADIQAANIDRAFLMLH 77 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAG------LPVAPWVAL 117 G GGEDG +Q +LE + +PYTGS V +SAL+MDKLR+K LW G LP + L Sbjct: 78 GPGGEDGRIQALLEFLHIPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVL 137 Query: 118 TR-AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 TR ++F +AE+ LG V+VKP+ EGSS+GMS+V LQ A A + Sbjct: 138 TRESDF--------VAELKRLGGEVMVKPANEGSSIGMSRVKTAEDLQAAFVKATDYQGS 189 Query: 177 VLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 VL E+ + G E+TVAIL E LP IR++ +FYD+ AKY++++T+Y CP GL A +E Sbjct: 190 VLAERLIVGAEYTVAILDGEALPPIRLETDHSFYDFNAKYIAEDTRYICPCGLSAEKEQE 249 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 L+ L L A+ LGC+GWGR+DVM D+ FYLLE NT+PGMTSHSLVPMAA+ G+SF++ Sbjct: 250 LKQLALTAFNVLGCRGWGRVDVMADAQQNFYLLEVNTAPGMTSHSLVPMAAKAVGLSFTE 309 Query: 297 LVVRIL 302 LVV IL Sbjct: 310 LVVTIL 315 >UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular organisms RepID=DDL_RHOFD Length = 346 Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 154/307 (50%), Positives = 201/307 (65%), Gaps = 12/307 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVL+GG SAEREVSL SG VL L G+DA+ DP E D+ +LK GF FIALH Sbjct: 28 KVAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFDPAERDLAELKVEGFSHCFIALH 87 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDGT+QG LEL+G+PYTGSGVMAS++++DK+ +K +W+ GLP W + A Sbjct: 88 GRFGEDGTVQGALELLGIPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEWRQVDSAA-- 145 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 +ALG P+IVKP REGS++G++KV A LA +HD VL E+++ Sbjct: 146 -----ATSEAFAALGSPMIVKPDREGSTIGLTKVTQIEQCGAAYALAARHDAMVLCEQFV 200 Query: 184 SGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 G E T+ +LG LP IRI YDY+ KY +D TQY PA L A +EA++Q Sbjct: 201 KGDEVTIPLLGSGAGAHALPVIRIVAPDGNYDYQNKYFTDTTQYLVPANLPAGEEAHIQQ 260 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQF-YLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 L LKA+ LGC+GW R+DVM+D+ + +LLE NTSPGMT HSLVPMAA+ AG+S+ L Sbjct: 261 LALKAYQVLGCRGWARVDVMIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALC 320 Query: 299 VRILELA 305 + +L A Sbjct: 321 LEVLRHA 327 >UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacteria RepID=DDL_XYLFT Length = 304 Score = 290 bits (743), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 159/310 (51%), Positives = 207/310 (66%), Gaps = 16/310 (5%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M ++AVLLGGTSAEREVSL SG VL LR G+DA VD L F +VF Sbjct: 1 MFGRVAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFN 60 Query: 61 ALHGR--GGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL- 117 LHG GGEDG +QG+++ G+PYTGS V+ SALSMDK+R+K +W GLP + +L Sbjct: 61 VLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLS 120 Query: 118 ---TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHD 174 T E K + LG PVI+KP++EGSSVG+S+V A L++A+ LA +++ Sbjct: 121 VCATAVEVRKA--------VEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYE 172 Query: 175 EEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 E+L+E+ + G E TV+IL E LPSIRI P G +YDY AKYL+++TQY CP GL+ E Sbjct: 173 GELLMEQLIEGDELTVSILDEMALPSIRIVPQGQWYDYNAKYLAEDTQYVCP-GLDDVAE 231 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 A + L L A+ ++GC+GWGR+DVM + G+F+LLE NT+PGMT+HSLVP AA Q GM Sbjct: 232 AEIAQLALAAFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMG 291 Query: 294 FSQLVVRILE 303 F LV RILE Sbjct: 292 FDDLVWRILE 301 >UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKY4_9GAMM Length = 313 Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 149/301 (49%), Positives = 197/301 (65%), Gaps = 8/301 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL+GG S ER++SL SG AVLA LR G+DA+ VD + G+ +VFIALH Sbjct: 11 RVAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRETARCMALEGYDRVFIALH 70 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDGTLQG L++ G+PYTG+GV+ SAL MDKL K LW G LP AP+ LT Sbjct: 71 GECGEDGTLQGCLDMGGMPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLT----- 125 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 G + +A+ ALGLP+IVKP+R GSS+G+++V L A A +V E+W+ Sbjct: 126 PGFDPEAVAD--ALGLPLIVKPARGGSSLGITRVDRVADLPAAFEAARVQPGQVFAEQWI 183 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFC-PAGLEASQEANLQALVL 242 +G EFTVA+LG E LP I I+ + FYDY AKY +D+T Y C P L S + LQ+L + Sbjct: 184 TGREFTVAVLGNEPLPVIEIRAASGFYDYHAKYEADDTGYLCPPPDLSRSAQLELQSLAI 243 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ L GWGR+D++ D G+ +L+E NT PGMT HSLVP AA QAG+ F +L +RIL Sbjct: 244 AAFAALEGCGWGRVDILQDEHGENFLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRIL 303 Query: 303 E 303 + Sbjct: 304 D 304 >UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Tax=Photobacterium RepID=Q6LQQ8_PHOPR Length = 308 Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 137/302 (45%), Positives = 204/302 (67%), Gaps = 5/302 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 +I VLLGG S+ER VSL SG V+ + G +A +DPK +DVT + KVFIALH Sbjct: 6 RIGVLLGGESSERSVSLKSGECVVKAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALH 65 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GE G +Q +L+L+ +PYTGSG +ASA+S++KL SK +WQ L A WV L + Sbjct: 66 GGIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHK---H 122 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + D + A++S++ PV+VKP +G S+G+SKV L +A+ AF++D+++LIE ++ Sbjct: 123 APIEDIK-AQLSSVVCPVVVKPISQGCSIGVSKVDNNADLLEAVITAFEYDDDILIESFI 181 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 +G E+T A+L + LP ++I+ S F+DY+AK+ S Y CP+ L + QE ++QAL L Sbjct: 182 AGREYTCAVLNGKPLPIVQIR-SEQFFDYDAKFGSQSATYHCPSDLTSEQERDMQALALN 240 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ LGC+GWGR+D +LD G +L+E NT PGMT+ S+ PMAA++AG+SF Q++ +L+ Sbjct: 241 AYNALGCRGWGRVDTILDESGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLLD 300 Query: 304 LA 305 A Sbjct: 301 SA 302 >UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_RUTMC Length = 293 Score = 274 bits (700), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 142/299 (47%), Positives = 193/299 (64%), Gaps = 9/299 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 IAVL+GG SAER VSL SG AV L I+ + D ++++L F + FI LHG Sbjct: 2 IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFDWHGYNLSELWQQEFDQAFIVLHG 61 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 RGGEDG +Q LE + YTGS AS +DK R+K++W+ L +AP + A K Sbjct: 62 RGGEDGYIQKQLENRCIRYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIV---ASIHK 118 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 + E LP +VKP+ EGSS+G+SKV ++ L +AL LA+Q++ LIE+W+ Sbjct: 119 PI------EPIDFPLPWMVKPTLEGSSIGISKVDSQIQLNNALMLAWQYNSHALIEQWIE 172 Query: 185 GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 G E+TVAILG++ LP ++I FYDYE+KY S++ QY CP GL +SQE LQ + LKA Sbjct: 173 GDEYTVAILGDKALPVVKIITDQGFYDYESKYHSNKIQYLCPCGLSSSQEQVLQVIALKA 232 Query: 245 WTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 + + KGWGR+D +++ + YLLE NT PGMTSHSLVPMAA+ GMSF++LVV I+ Sbjct: 233 FFAINAKGWGRVDFIINQHNKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIIN 291 >UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas RepID=DDL_MARMS Length = 317 Score = 272 bits (696), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 141/308 (45%), Positives = 197/308 (63%), Gaps = 14/308 (4%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGG-----IDAYPVDPKEVDVTQLKSMGFQKVF 59 IAV+ GG SAEREVSL SG V GLR G +D Y + + QL+S+ F F Sbjct: 10 IAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDLYGSNAALDPIVQLQSIEFDLAF 69 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG GEDG +Q +LE+ G PYTGS +A L+MDK+ +K W G G+P +++ Sbjct: 70 IALHGGEGEDGRVQALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIPTPAYLSFVD 129 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 ++ L E + PVIVKPSREGS++G++K + L DAL A ++D ++L+ Sbjct: 130 H------ANADLIE-EQMSYPVIVKPSREGSTIGINKAMNRAELDDALIKALEYDSDILV 182 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPS--GTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 E+++ GPEFTV ++ + P I ++P+ YDYEAKY++D+T+Y P GL+ E L Sbjct: 183 EEFIDGPEFTVTVIDDVAYPPIGLKPAPDHKLYDYEAKYIADDTEYLLPCGLDEDDENEL 242 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Q L L A+ +LGC GWGR+DVM D G F++LE NT+PGMTSHSLVPMAA+ G+ ++ L Sbjct: 243 QMLALDAYRSLGCFGWGRVDVMRDQAGVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASL 302 Query: 298 VVRILELA 305 V +I + A Sbjct: 303 VEKIAQNA 310 >UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXY6_HALNC Length = 324 Score = 267 bits (682), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 140/304 (46%), Positives = 199/304 (65%), Gaps = 14/304 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL----KSMGFQKVF 59 ++ +LLGG S+ER +SL SG VL L+ GID +D + + +L ++ F + F Sbjct: 9 RVLLLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRDFLPELLAAHQAKPFDRAF 68 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPW-VALT 118 I LHGRGGEDG +Q +LEL+G+PYTG+ + SA+ MDKL K +W+G GLP PW V T Sbjct: 69 IILHGRGGEDGQIQAVLELLGIPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVVAT 128 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 E + L +LGLPV+VKP EGSSVG++KV + L A R A ++ + V+ Sbjct: 129 EIEAHRALD--------SLGLPVMVKPVAEGSSVGVAKVDQPDQLAAAFREAARYGQ-VM 179 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 +E+++ G E+TV++LG LP IR+ FYD++AKYL+++T+Y P+GL A +E+ +Q Sbjct: 180 MERYIRGGEYTVSLLGGRALPVIRLSTPHDFYDFDAKYLANDTEYTIPSGLSAEEESAMQ 239 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 A+ LKA+ +G GWGR+D M D GQ +L+E NT PGMT HSLVPMAAR G+ +L Sbjct: 240 AIALKAFEQIGGSGWGRVDFMRDEHGQNWLIEVNTVPGMTDHSLVPMAARAVGIEIEELC 299 Query: 299 VRIL 302 + IL Sbjct: 300 LGIL 303 >UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobacillus RepID=B5ELC0_ACIF5 Length = 308 Score = 266 bits (680), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 151/308 (49%), Positives = 192/308 (62%), Gaps = 10/308 (3%) Query: 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQ-LKSMGFQK 57 M+D +IAVL GG S EREVSL+SG AVL L+ G+DA VD + + Q + G Q Sbjct: 1 MSDLARIAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDIQPAILQQQMAESGAQI 60 Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 F HG GEDG LQ LE + +PYTGSGV+ASAL+MDK R K LW+ AGLPV + L Sbjct: 61 AFNVCHGAVGEDGLLQACLETLDMPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILL 120 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 R L + G P+ +KP+ GSS+G+SKV L AL+ AF ++EV Sbjct: 121 HRGSHTPDLGAR-------FGWPLYIKPNHGGSSLGVSKVGGPAELDAALQCAFAIEDEV 173 Query: 178 LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 L E + G E TV IL + LP I I+ FYDY AKYL+D+T+Y P+GL A E L Sbjct: 174 LCEGAVIGHEVTVGILDGQALPPIVIETPRAFYDYTAKYLADDTRYLLPSGLGAPLEQQL 233 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 QAL L+A+ LGC+ WGR+D M+ DG+ +LLE N+ PGMTSHSL+PMAA+ GM F +L Sbjct: 234 QALALRAFAELGCRDWGRVDFMIGGDGRPHLLEVNSVPGMTSHSLIPMAAKATGMGFPEL 293 Query: 298 VVRILELA 305 IL A Sbjct: 294 CATILRTA 301 >UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp enzyme n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7C3_9GAMM Length = 309 Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 141/303 (46%), Positives = 190/303 (62%), Gaps = 11/303 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-EVDVTQLKSMGFQKVFIAL 62 + AVL+GG +AERE+SL SG V + L G +DP E QL + F VF L Sbjct: 10 RFAVLMGGAAAEREISLQSGENVASVLEAAGCPVTRIDPAVEQWADQLSDIDF--VFNLL 67 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GGEDG LQG+ ++M LPY+GSGV+ SAL+MDK R+K LW G GLP + LT Sbjct: 68 HGPGGEDGVLQGLFDVMNLPYSGSGVLGSALTMDKARTKQLWSGMGLPTPDFTLLT---- 123 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 +D +++ + VKP+ EGSS+GMSK L+ A + A + ++ E + Sbjct: 124 ----ADTDWSDLIERHGTLFVKPALEGSSIGMSKASTPEQLEAAWKRARAYKGGIIAECF 179 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 ++G E+TV+ILG+ LP+IRI+P+ FYD++AKY+SD T +FCP+GL AS EA L AL L Sbjct: 180 VAGEEYTVSILGDRALPAIRIEPASEFYDFDAKYVSDNTGFFCPSGLTASDEAELSALAL 239 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +A+ + WGR+DVM D G + LLE NT PGMTSHSLVPMAAR M+ + I Sbjct: 240 RAFYAVDAAVWGRVDVMRDISGAWQLLEVNTIPGMTSHSLVPMAARADSMTLIDFLSEIY 299 Query: 303 ELA 305 L+ Sbjct: 300 RLS 302 >UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C25 Length = 302 Score = 256 bits (655), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 9/302 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG S ERE+SL SG AVL L + ++A+ +DPK +++L +VFI LH Sbjct: 8 KVAVLLGGESNEREISLQSGQAVLTSLLQSKVNAFGLDPKFEPLSKLAECS--RVFICLH 65 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G+ GEDG +Q L+ + +PYTGSG AS L MDKL SK +W+ + +V L E Sbjct: 66 GKDGEDGKIQSYLDDIKIPYTGSGFHASKLGMDKLLSKNIWKKLKINTPNFVRL-----E 120 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 +G++ ++ + LG +K + GSS+G+SKV Q A A++ D V+ E + Sbjct: 121 EGMTYDEVCK--NLGSSFFIKAANSGSSIGISKVTKPQQYQAAFESAYKVDNTVIAEMMI 178 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G EFT+ IL L + I+P FYDYEAKY D+T++ CPA L+ + L +K Sbjct: 179 FGEEFTLPILDSSPLSIVEIRPKTDFYDYEAKYHRDDTEFICPAKLDKVLVDKINQLGMK 238 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ LGC GWGR+D M+++ + +++E NT PGMTSHSLVPM+A+Q+G+SF LV+++L+ Sbjct: 239 AFNALGCSGWGRVDFMINNQNEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLD 298 Query: 304 LA 305 A Sbjct: 299 TA 300 >UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW8_CRYCD Length = 313 Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 140/307 (45%), Positives = 194/307 (63%), Gaps = 10/307 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-KEVDVTQLKSMGFQKVFIAL 62 K+A+L GGTS ERE+SL SG L++ G +DP K+ D+ QL S F F+ L Sbjct: 9 KVALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKKDDLAQLVSQPFDVAFLCL 68 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGRGGEDG +QG LE +GLPY G G+ +SA +MDK+++K+ ++ G+P + L R E Sbjct: 69 HGRGGEDGAIQGFLETIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHRNE- 127 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 S I+ LG ++VKP+ EGS++G+S + +AL AL AF+ D VLIE + Sbjct: 128 ----SVDAATVIAQLGNHLVVKPATEGSALGVSIIEGPSALDRALTEAFKLDNAVLIETF 183 Query: 183 LSGPEFTVAILGEE---ILPSIRIQPS-GTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 ++G E TVA++G E LP I I P G FYD+E+KY +D +Q+ CPA L Q +Q Sbjct: 184 MAGTELTVAVIGNENASALPVIEIVPQLGEFYDFESKYAADGSQHICPARLTDEQTTAVQ 243 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + ++A LGC G R DV+L +DG ++LE NT PGMT+ SL+P A R AGMSF QL Sbjct: 244 QVAVQAHKALGCCGVSRSDVILAADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLC 303 Query: 299 VRILELA 305 R++ELA Sbjct: 304 TRLIELA 310 >UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2RKQ9_ACIFE Length = 310 Score = 253 bits (646), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 136/310 (43%), Positives = 193/310 (62%), Gaps = 12/310 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD--PKEVDVTQLKSMGFQKVFI 60 D++AV++GG S EREVSLN+G A+L L+E G DA +D P+ + V QLK+ G + VF Sbjct: 5 DRVAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLDPEHI-VDQLKASGARVVFN 63 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 A+HG GEDG LQG+LE++G+PYTGSGV+ASAL+MDK+ +K L+Q +P A + L + Sbjct: 64 AVHGLYGEDGRLQGILEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDK- 122 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 K D + + +G+P +VKP+ +GSS+G+ V E L DAL+ AFQ+ + VL E Sbjct: 123 ---KRDQDPKARILEEIGIPCVVKPATQGSSIGVVIVKDEKQLDDALQEAFQYGDHVLCE 179 Query: 181 KWLSGPEFTVAIL-GEE----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 + +G E ++ GE+ +P + I+P FYD+ KY T Y CPA +A Sbjct: 180 AFFTGKEVAAGVMMGEDGRAVPMPLVLIEPHVNFYDFHNKYTKGATTYTCPAPFDAETTR 239 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 LQ + + A+ LGC G R D+ML +G LE NT PGMT+ SL+P AA G+SF Sbjct: 240 RLQKIAVAAYEALGCSGVARTDLMLADNGDCIALEVNTIPGMTATSLIPKAAAAMGISFP 299 Query: 296 QLVVRILELA 305 L +IL+ A Sbjct: 300 DLCEKILKTA 309 >UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=DDL_DICNV Length = 310 Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 134/303 (44%), Positives = 191/303 (63%), Gaps = 11/303 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIAL 62 K+AVL GG S+ERE+SL G AV A L GIDA+ +D + + + LK F + F+ L Sbjct: 9 KVAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFSRAFVML 68 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT-RAE 121 HGRGGEDG +Q +L+ +G+PYTGS V+A AL+MDK+ K +WQ AGLPV V +T + Sbjct: 69 HGRGGEDGEIQAILQWLGIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPESR 128 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 FE + + ++KP+ EGSSVG+S+V + L A+ A +++ E Sbjct: 129 FETLVEQLHCQDF-------VIKPALEGSSVGVSRVKNQEQLAAAIPFAGGARAKIMAEP 181 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGT--FYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 W+ G E T I+ + +LP+I I FYDY+AKY + TQY CPA ++A+ +A + Sbjct: 182 WIVGRELTYGIVNDTVLPAIEIVAGNDHDFYDYDAKYHAANTQYLCPAPIDAALDARCRE 241 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + A+ +G +GWGR+D+++D+ + YLLE N PGMT+HSLVPMAA+Q GM FS LV Sbjct: 242 IAFAAFQAIGARGWGRVDMIVDAQNRPYLLEINLVPGMTTHSLVPMAAQQIGMDFSALVQ 301 Query: 300 RIL 302 IL Sbjct: 302 SIL 304 >UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE55_9FIRM Length = 312 Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 132/313 (42%), Positives = 191/313 (61%), Gaps = 16/313 (5%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD-PKEVDVTQLKSMGFQKVFI 60 T +I V++GG S EREVSLN+G+A++ L+E G DA P+D + +Q++ G + VF Sbjct: 4 TKRIGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDPSLFPSQIEDAGVKVVFN 63 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 A+HG GEDG LQ +LE++G+PYTGSGV++SA++M+K +K +++ G+ A + LT Sbjct: 64 AVHGLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTD- 122 Query: 121 EFEKGLSDKQLAE---ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 D+Q A+ I LG+P +VKP+ +GSS+G++ V E L AL AF + + V Sbjct: 123 ------KDRQTAKQDIIRKLGIPCVVKPAEQGSSIGVTIVKKEEDLDKALEEAFSYGKLV 176 Query: 178 LIEKWLSGPEFTVAIL----GEEI-LPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEAS 232 L E + +G E ++ G I +P + I+P FYDY KY T Y CPA + Sbjct: 177 LAEAFFTGKEVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFDEC 236 Query: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGM 292 LQ +KA+ LGC G R+D M+D++G F LE NT PGMT+ SLVP AA+ G+ Sbjct: 237 LTKALQEEAVKAYKALGCSGVARVDEMVDAEGNFICLEVNTIPGMTATSLVPKAAKAMGL 296 Query: 293 SFSQLVVRILELA 305 SF L +ILE A Sbjct: 297 SFPDLCEKILETA 309 >UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6C5_9BACT Length = 334 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 132/322 (40%), Positives = 189/322 (58%), Gaps = 22/322 (6%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 T IAVL+GG S ERE+SL SG AV L++ G + +D K+ D+ +L FIA Sbjct: 3 TRNIAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDVKDEDIKELDHKEIDVAFIA 62 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG +Q +LE+ G+PYTGSGV AS ++MDK+ SK + AGL + L + Sbjct: 63 LHGYFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKP- 121 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 L+D + EI GLPV++KP+ GSS+G+S + N + A + +E +E+ Sbjct: 122 --VNLADIE-QEIQEFGLPVVIKPTNGGSSIGVSIIKEGNNFHYHVGEALKCGDEAFVER 178 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYF----------------- 224 ++SG EFT+ IL LP I I + F+DY AKY S +T+YF Sbjct: 179 YVSGREFTIGILDSRSLPIIEICVADDFFDYNAKYNSGKTRYFVINKTFENKTNILNTPC 238 Query: 225 CPAG-LEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLV 283 C G L+A+ Q L ++A +GC+G+ R+D++LD+ FY+LE NT PG T SL+ Sbjct: 239 CDVGFLDAALYDKAQELAIEAHNAIGCRGFSRVDILLDNKNDFYILEVNTIPGFTEKSLL 298 Query: 284 PMAARQAGMSFSQLVVRILELA 305 PMAAR A +SF+ L +I++LA Sbjct: 299 PMAARAADISFTSLCEKIVDLA 320 >UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteobacterium KB13 RepID=B6BWF0_9PROT Length = 299 Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 125/304 (41%), Positives = 181/304 (59%), Gaps = 8/304 (2%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 + KIA+L GG S ER++S+ SG AV L+ + +DP D+ L + + FI Sbjct: 2 LIKKIALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLIDPINTDLCSL--VNYDAAFI 59 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG+ GEDG +Q +LEL+ +P+TGS AS L+M+K SKL+W L ++ L + Sbjct: 60 CLHGKNGEDGKIQSLLELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLILNKT 119 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 L K++ I+ L P IVKPS GSS G++ V ++ L A A ++D V+ E Sbjct: 120 ----NLDYKKI--ITHLSDPFIVKPSSSGSSFGINLVKNKDDLILAFTDASKYDPTVIAE 173 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 +++ G EFTV+ILG + L + I FYDY AKY+S+ET + P L ++ + Sbjct: 174 EFIEGREFTVSILGNKSLGVLEITTKNEFYDYNAKYVSNETIFSKPTDLNPEVLEKMENI 233 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L A+ ++GC GWGR+D M+D FYL+E NT PGMT HSL P+AAR AG++F Q V Sbjct: 234 ALSAFISIGCSGWGRVDFMMDKKFNFYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQH 293 Query: 301 ILEL 304 I++L Sbjct: 294 IVDL 297 >UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified Gammaproteobacteria RepID=A4A5G2_9GAMM Length = 315 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 140/293 (47%), Positives = 182/293 (62%), Gaps = 15/293 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD---PKEVDVTQLKSMGFQKVFI 60 +IAVL GGTS ER+VSL S VL LR+GG + +D P+ + + + F Sbjct: 11 RIAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALDTGEPRWWERLEDADIAFN---- 66 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 HG GGEDG QG+L MG+ TGS V+ SAL+MDKLRSK LW+ GLP A + A+ A Sbjct: 67 IQHGVGGEDGVTQGLLASMGVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANF-AMVDA 125 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + L+E A +KPS EGSS+GMS+V + + + A A + E +L E Sbjct: 126 HTDAA---ALLSEWGA----AFIKPSAEGSSLGMSRVDSVDGFKAACEAAAVYGEGILAE 178 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 +++ GPE+TVAILG+ LP IRI+ S FYDYEAKY + T+Y P GL +E L L Sbjct: 179 EFIDGPEYTVAILGDRALPPIRIEASREFYDYEAKYKGNSTRYHIPCGLSDGEEETLCRL 238 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 L+A+ LGC WGR+D+M + G+F LLE NT PGMT HSLVPMAA+ AGMS Sbjct: 239 ALEAFAALGCSIWGRVDLMRNRRGEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291 >UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteriaceae RepID=C7N496_SLAHD Length = 317 Score = 239 bits (610), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 129/309 (41%), Positives = 190/309 (61%), Gaps = 11/309 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-VDVTQLKSMGFQKVFIAL 62 +AVL GG S EREVSLNSG A L G + +D E D+ +L F F+AL Sbjct: 11 NVAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLDTAEKADLKRLIDEPFDVAFLAL 70 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGRGGEDGT+QG LE +G+PYTGSG+ AS+++++K ++K + AGL VA + ++ Sbjct: 71 HGRGGEDGTIQGFLETVGIPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTIS---- 126 Query: 123 EKGLSDKQLAE--ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 E + D+ L + G+P +VKP+ EGSS+GM+ V + +A++ A D E ++E Sbjct: 127 EDDILDENLISDIVETCGIPCVVKPTTEGSSLGMTIVRDAADIAEAIKTALAVDVEAMVE 186 Query: 181 KWLSGPEFTVAILGE---EILPSIRIQPS-GTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 +++SG E TV ++G E LP I+I P+ FY+Y AKY + +++ CPA + N Sbjct: 187 QFISGTELTVGVIGNDDAEALPVIQIVPTEDEFYNYHAKYAAGGSRHLCPAPVSRDVTEN 246 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 Q + + A LGC+G R D+++D+D ++LE NT PGMT SLVP AA+ AGM F Q Sbjct: 247 AQEMAVAAHMVLGCRGVSRTDIIVDADDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQ 306 Query: 297 LVVRILELA 305 L +++ LA Sbjct: 307 LCEKLIALA 315 >UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQQ8_9FIRM Length = 312 Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 130/310 (41%), Positives = 191/310 (61%), Gaps = 12/310 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA--YPVDPKEVDVTQLKSMGFQKVFI 60 DKI V++GG S E E+S +G+A+L L+ G +A ++P +K G VF Sbjct: 4 DKIVVVMGGPSTEAEISRQTGSAILKALQSKGYNAEGMELNPPTF-AEDIKKSGCAIVFN 62 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG+ GEDG LQG L+++G+PYTGSGV+A+A++MDK SK ++ G+ R Sbjct: 63 ALHGKFGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYYRY 122 Query: 121 EFEKGLSDKQLAEIS-ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 E ++ L+ AEI LPV+VK + +GSS+G+ V ++AL+DAL+ AF +++EVL+ Sbjct: 123 EMKRDLA----AEIKQGFSLPVVVKAASQGSSIGVYIVETKDALEDALKEAFSYNDEVLV 178 Query: 180 EKWLSGPEFTVAILG----EEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+++ G E TVA+ G +E P I I + YDYE+KY + + PA + A + Sbjct: 179 EEFIRGKELTVAVWGNEEKKEAFPIIEITTTSGRYDYESKYTKGASTHIIPARVSAEKTK 238 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 +Q L +K +T GCKG R+D+ML DG Y++E N+ PGMT SLVP A R G+ F Sbjct: 239 EIQDLAIKTFTACGCKGVARVDMMLSEDGTPYVIEVNSVPGMTELSLVPDAGRAMGVEFP 298 Query: 296 QLVVRILELA 305 +L RILE+A Sbjct: 299 ELCERILEMA 308 >UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria RepID=DDL_GEOLS Length = 313 Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 135/299 (45%), Positives = 181/299 (60%), Gaps = 8/299 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 +I VL+GG SAER+VSL SG AV L G D+ +D + L+ FIALH Sbjct: 10 RIGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILREEKIDLAFIALH 69 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +QG+LELM +PYTGSGV+ASAL+M KL SK + AGL + P+ + + Sbjct: 70 GRYGEDGCIQGLLELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQG--- 126 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 D+ AE GLPV+VKP +EGSSVG++ V LQ AL AF++D VL+EK++ Sbjct: 127 ----DRCNAEQLPFGLPVVVKPVQEGSSVGVTIVKKPEDLQAALDEAFRYDTLVLVEKYI 182 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E V IL + + +I I P FYD+EAKY ++ PA L +Q L+ Sbjct: 183 KGQEVQVGILANQPIGAIEIVPKNEFYDFEAKYSDGMAEHIFPARLAEPLYQKVQQQGLQ 242 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVP-MAARQAGMSFSQLVVRI 301 A LGC G+ R+D ++ +G YLLE NT PGMT+ SL+P +A + AG+SF LV +I Sbjct: 243 AHQALGCDGYCRVDFLVTENGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEALVEQI 301 >UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria RepID=DDL_PELTS Length = 318 Score = 236 bits (602), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 130/312 (41%), Positives = 191/312 (61%), Gaps = 10/312 (3%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 MT K+ VL+GG S+EREVSL +G AV L+ A +D V ++K FI Sbjct: 1 MTLKVGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKEERIDLAFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGR GEDGT+QG+LE++ +PYTGSGV+ASAL+MDK +K + Q GLP P++ + + Sbjct: 61 ALHGRYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKK 120 Query: 121 EFEK----GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 E K S++ E +GLP++VK +GS++GMS V E + AL LA+ +D Sbjct: 121 EALKESLQACSERICRE---MGLPLVVKAPTQGSTIGMSFVHKEEDMAGALELAYDYDPV 177 Query: 177 VLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQ 233 L+E+++ G E T +ILG E LP I I + YDY+AKY + + + P + Q Sbjct: 178 ALVEQFIRGTEVTASILGNEEPVALPLIEIVSATGVYDYKAKYTAGMSDHIIPPRIPEKQ 237 Query: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 + ++ L + + +LGC+G R+D ++D G ++LE NT PGMT+ SL P AAR AG+ Sbjct: 238 QNAIKKLAVSTFKSLGCRGLARVDFIVDKQGNPFILEVNTIPGMTATSLFPDAARAAGIE 297 Query: 294 FSQLVVRILELA 305 F L+ +++ELA Sbjct: 298 FPDLIEKLVELA 309 >UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXB8_DESAC Length = 305 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 133/306 (43%), Positives = 181/306 (59%), Gaps = 15/306 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 +I V++GGTSAEREVSL +GAA++ L E G +D + QL VF+A+H Sbjct: 7 RIGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKTLPAQLIEKQIDVVFLAVH 66 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLL--WQGAGLPVAPWVALTRAE 121 GR GEDGT+QGMLELM +PYTGSGV+ASAL++DK +K + G P A V + Sbjct: 67 GRFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLVDVN--- 123 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA--LQDALRLAFQHDEEVLI 179 SD P +VKP REGS++G++ +A NA L+ A+ A +D VL+ Sbjct: 124 -----SDVDDIVAQCGHFPQVVKPVREGSTLGIA--IANNADELKQAIAQARDYDRRVLV 176 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 E ++ G E TV+++ L I I P FYDY AKY +T+Y PA L SQ +Q Sbjct: 177 EDYIDGREVTVSVMNGRALSIIEIVPESGFYDYTAKYTVGKTRYLVPAPLPESQYKAIQQ 236 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + ++ +LGC+G R+D M+ +D FY LE NT PGMT SL+P AA GM F++LV Sbjct: 237 AAVASYASLGCRGAARVDFMV-TDDNFYFLEVNTIPGMTETSLLPKAAADCGMDFAKLVE 295 Query: 300 RILELA 305 IL+ A Sbjct: 296 GILDDA 301 >UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=5 Tax=Aquificales RepID=C0QUP4_PERMH Length = 303 Score = 233 bits (593), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 184/304 (60%), Gaps = 16/304 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD--VTQLKSMGFQKVFIA 61 KIA+L GG+S+ERE+S+ SG AV L++ G DP E + ++ FIA Sbjct: 5 KIALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFDPAEGKDFIKKITDYNPDLAFIA 64 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG+ GEDGT+QG+LE +G+ YTGS + SA+ MDK +K + + G+ V Sbjct: 65 LHGKIGEDGTIQGVLEFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVP--------- 115 Query: 122 FEKGLSDKQLAEIS--ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 +G + + L +I+ LG PV+VKP+ EGSS+G+ V E+ L A+ + D +V+I Sbjct: 116 --EGYTIQNLDQINDLRLGYPVVVKPNSEGSSIGVKIVENEDQLGKAVGEILKIDSKVII 173 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 E+++ G E TV IL E L I I+ FYDY KY+S ET+Y CPA +E+S +Q Sbjct: 174 ERFIKGREITVGILNGEPLDIIEIKVKEGFYDYYNKYISQETEYICPAEIESSLYRKIQN 233 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 LK + LGCKG R+D +LD D + Y LE NT PG+T HSL+P AA G++F L++ Sbjct: 234 TALKIYNILGCKGVARVDFILDKD-KPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLIL 292 Query: 300 RILE 303 +I+E Sbjct: 293 KIIE 296 >UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIX2_HALO1 Length = 330 Score = 229 bits (584), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 127/302 (42%), Positives = 180/302 (59%), Gaps = 8/302 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD--PKEVDVTQLKSMGFQKVFIA 61 ++ VL GG S+EREVSL SGA VLA L+E G + VD P L + V+ A Sbjct: 25 RVGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVDWTPGSSLPALLVEHRVEVVWNA 84 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG +QG+ MGLP TG+ + ASA++MDK+ SK L++ G+P W L E Sbjct: 85 LHGTYGEDGAVQGLCACMGLPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRPDE 144 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + A + LP+++KP+ EGSSVG+S V + + AL+ A VL+E+ Sbjct: 145 GDTA------AVFAEWALPLVIKPAYEGSSVGLSLVRERDEIGPALKRARAGQGPVLVER 198 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 ++ G E +V IL + +L ++ I+P+ YDYEAKY+ D+T + P LE +AL Sbjct: 199 YIEGVELSVGILADRVLGAVEIRPTSGLYDYEAKYVRDDTAFLVPPELERGHIDTCEALG 258 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L+A+ LGC G+ R D+ + +DG ++LE NT PGMTSHSL+P A AG+ + L RI Sbjct: 259 LRAYHALGCTGYARADLRVQADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCERI 318 Query: 302 LE 303 LE Sbjct: 319 LE 320 >UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEL0_GEMAT Length = 344 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 138/338 (40%), Positives = 192/338 (56%), Gaps = 39/338 (11%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQ-------------- 49 +I VLLGG SAER+VSL+SG + LRE G + +DP E +T+ Sbjct: 6 RITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLASGVGSA 65 Query: 50 ---------LKSMGFQKV-------------FIALHGRGGEDGTLQGMLELMGLPYTGSG 87 L+S V F+ALHG GEDGT+Q +L+++G+PYTGSG Sbjct: 66 PPSLEALAGLESRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQALLDMVGVPYTGSG 125 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 +ASAL+MDK SK++ + AG+ A W+ + + L + L PV+VKPS+ Sbjct: 126 HLASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGR--HLDWPVVVKPSK 183 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSG 207 +GS+VG+S V A L A+R AF++D+EV+IE+++ G E TV ILG+ +LP+I IQP Sbjct: 184 QGSTVGLSIVRAPEELAAAVREAFRYDDEVMIERFVPGRELTVGILGDAVLPTIEIQPVK 243 Query: 208 TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFY 267 YDYE KY + F A L + + L +A+ L +G+ RID LD GQ + Sbjct: 244 ELYDYECKYTPGMAKEFV-AELSPEEASKLADQAKRAFQALKLRGYARIDFRLDPQGQPW 302 Query: 268 LLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 LEANT PGMT SL+P AA AG+ F L RI++LA Sbjct: 303 CLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLA 340 >UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales RepID=DDL_ANASK Length = 308 Score = 226 bits (577), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 134/302 (44%), Positives = 181/302 (59%), Gaps = 9/302 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL GG S+EREVSL +GAA LR+ G D +D +L++ + F+ALH Sbjct: 8 RVAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARLRAERVEVAFVALH 67 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG++QG+LE M +PYTGSGV+ASA+ MDK SK +++ GL VA + RA Sbjct: 68 GRFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAG 127 Query: 124 K-GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 G+ D GLP +VKP+ EGSSVG+ V L A R A H +V++E++ Sbjct: 128 SIGVGDLPF------GLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAASHAGDVIVERY 181 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGL-EASQEANLQALV 241 + G E VA+L + L +I I P+ FYDY AKY + T+YF PA L EA A ++A Sbjct: 182 VKGTEVDVAVLDGKALGAIEIVPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMEA-A 240 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 A +GC G R+D ++ DG Y+LE NT PGMT+ SLVP A G+SF L RI Sbjct: 241 EAAHRGIGCSGVTRVDFIVAGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERI 300 Query: 302 LE 303 L+ Sbjct: 301 LD 302 >UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella RepID=DDL_FRAP2 Length = 297 Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 179/304 (58%), Gaps = 13/304 (4%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIA 61 +KI VL GG S EREVSL SG AVL L G DA +D D V +L + K FIA Sbjct: 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIA 63 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GE+G + +LEL+G+ +TGS + + ++MDK+ SK + +P Sbjct: 64 LHGEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTP--------- 114 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 K L+D+ L E + PV VKPS GSS+ KV + L++A + A +H E V+IE+ Sbjct: 115 MAKFLTDR-LVEADEISFPVAVKPSSGGSSIATFKVKSLEELENAYQQASKHGE-VMIEQ 172 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 W++G E TVAI+ ++ S+ I+P FYDYE+KY S ++ Y P+GL +E ++ L Sbjct: 173 WVTGKEITVAIVNNDVYSSVWIEPLNEFYDYESKY-SGKSIYHAPSGLCEQKELEVRQLA 231 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 KA+ LGCKG R+D + D G FY++E N+SPGMT +SL P +A G+ F V I Sbjct: 232 KKAYDLLGCKGHARVDFIYDDKGDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSI 291 Query: 302 LELA 305 LE A Sbjct: 292 LEQA 295 >UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteobacteria RepID=DDL_SYNFM Length = 311 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 137/310 (44%), Positives = 183/310 (59%), Gaps = 18/310 (5%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG--FQKVFIAL 62 +A+L GG SAEREVSL SG V L + DP D+T+L + I L Sbjct: 8 VALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAH-DLTRLAADAEKIDVALIIL 66 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGR GEDGT+QG+LE +G+PY GSGV+ SA++M+K+ SK L+ AGLPVAP + R E Sbjct: 67 HGRMGEDGTIQGLLESLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADRREP 126 Query: 123 E--KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 ++D+ LGLPV+VKP EGSS+G+S V + L A+ +Q+D LIE Sbjct: 127 PDLDTVADR-------LGLPVVVKPEHEGSSIGLSIVRNRDQLAAAVETGWQYDRRCLIE 179 Query: 181 KWLSGPEFTVAILGE---EILPSIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 K++ G E T +LG + LP I I P + F+DY+AKY ++ CPA L + A Sbjct: 180 KYVHGIEITGGVLGNDHLQALPLIEIIPGEAYEFFDYKAKYTPGASREICPARLSDTITA 239 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 Q KA L CKG+ R D M+ S ++LE NT PGMT+ SL P AA AG+SFS Sbjct: 240 KAQEYARKAHQALCCKGYSRTD-MIVSGNDIFILETNTIPGMTATSLFPQAAAVAGISFS 298 Query: 296 QLVVRILELA 305 L+ R++ELA Sbjct: 299 ALLDRLIELA 308 >UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales RepID=DDL_BACHD Length = 305 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 121/307 (39%), Positives = 181/307 (58%), Gaps = 11/307 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 KIAVL GGTSAEREVSL+SG ++ L+ G + +D V L + VFI LH Sbjct: 2 KIAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQVRDLVDLDVDLVFIGLH 61 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +Q +L+L+ +PY G+GV SAL+MDK ++KL ++ AG+ VA V L + Sbjct: 62 GRLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTY- 120 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 D + PV+VKP++EGS++G++ E L + AF+HD+ +LIE+++ Sbjct: 121 ----DANAFNFTGT-YPVVVKPNQEGSTIGLTVAETEEELLQGIEEAFRHDDTILIEEFI 175 Query: 184 SGPEFTVAILG----EEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 +G E TVA+LG E LP + I P YDYE+KY +++ PA + A +Q Sbjct: 176 AGTEVTVAVLGNKGEERSLPVVEIVPKNKLYDYESKYAPGMSEHIVPARISEEHTAYVQQ 235 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQF-YLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 ++A LGC + R+D ++ +DG +L+ NT PGMT SL P AA+ GMS+ +++ Sbjct: 236 AAVRAHQALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMI 295 Query: 299 VRILELA 305 + L+ Sbjct: 296 QTFVNLS 302 >UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteria RepID=DDL_SYNJB Length = 325 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/306 (41%), Positives = 184/306 (60%), Gaps = 9/306 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE---VDVTQLKSMGFQKVFI 60 I VL GG SAER+VS +G A L + G +DP E + + Q + G V+I Sbjct: 2 NIVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDEDLPLRLWQERQAGCDFVWI 61 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GGEDG +QGML+ +GLPY GSG +ASAL+MDKL SK +++ AG+P W Sbjct: 62 ALHGPGGEDGVVQGMLDWLGLPYQGSGPLASALAMDKLVSKQIFRAAGIPTPDWQVW--- 118 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + + L+ A + LG P+++KPS GS+VG+S V E + L LA + +E Sbjct: 119 DDQNPLTWADCA--AELGSPLVIKPSNNGSTVGISIVRDERSFAQGLELARSVSSRIFLE 176 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPS-GTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 +++ G E T++IL ++LP+I I P+ G FYDYEAKY +++ P L + A +A Sbjct: 177 RYVPGKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSPAGLARCEA 236 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 LKA+ LGC+G R+D+ +D + ++LE NT PGMT SL P AA G +F++LV Sbjct: 237 AGLKAYQALGCEGLARVDLRVDPEENPWVLEVNTLPGMTPTSLCPDAAAALGWTFTELVE 296 Query: 300 RILELA 305 R+L+ A Sbjct: 297 RMLQDA 302 >UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD72_PLALI Length = 338 Score = 216 bits (550), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 126/295 (42%), Positives = 169/295 (57%), Gaps = 4/295 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 IA+L GG S ER +SL SG AV L+E G P+DP V + + GF VFIALH Sbjct: 17 NIALLAGGDSDERSISLRSGQAVCQALQERGHFILPIDPAIVSLKGMDWNGFDAVFIALH 76 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +Q +LE G+PYTGS AS L+ DK +K + +P W L+ E Sbjct: 77 GRFGEDGGVQTLLEESGIPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELSPHES- 135 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 D L + LG PV++KP+ +GSS+G+S V LQ A A +DE +++E + Sbjct: 136 ---FDSLLMKAKELGWPVVIKPASQGSSLGVSIVRQPEQLQSAYERARHYDEALIMEAAI 192 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E+TV + +EILP I I+ F+D+ AKY D T+Y L A+ L+ Sbjct: 193 VGSEWTVGLHDDEILPPICIETDREFFDWVAKYEDDHTRYIFDKPLPATCRQKLETACRG 252 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 A LG G R+D+MLDS+G ++LE NT PG+T HSLVP AA+QAG S +L Sbjct: 253 AVHALGVTGISRVDLMLDSEGNPWVLEINTIPGLTDHSLVPKAAQQAGWSLGELC 307 >UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFZ2_9BACT Length = 298 Score = 216 bits (549), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 123/302 (40%), Positives = 170/302 (56%), Gaps = 19/302 (6%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVL GG SAEREVSL SG A L G +D ++ G FIALH Sbjct: 5 KVAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEAGADVCFIALH 64 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG +QGML+++G+PYTGS A+ ++ DKL SK + G+ ++ L + Sbjct: 65 GTYGEDGRVQGMLDIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELNAPK-- 122 Query: 124 KGLSDKQLAEISALGLP---VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 G+P ++KP+R+GSSVG+ V E L AF++D +V++E Sbjct: 123 -------------KGMPFECCVIKPARQGSSVGIHIVQNEEEYFSKLEDAFKYDSKVIVE 169 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 + + G E TV+IL E LP I I+P YDYE+KY T+Y GL AS+ ++ Sbjct: 170 ECIKGVELTVSILDGETLPVICIRPKKGVYDYESKYTKGMTEYVFDTGLSASETECVENA 229 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 +KA+ LGC G+GR D+M D Y+LE NT PGMT SL+P AA +AGMSF +V + Sbjct: 230 AMKAFDVLGCSGYGRADIMYDGRTP-YVLEVNTLPGMTETSLLPKAANKAGMSFDNMVEK 288 Query: 301 IL 302 +L Sbjct: 289 ML 290 >UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VIQ4_9BACT Length = 314 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/313 (41%), Positives = 179/313 (57%), Gaps = 15/313 (4%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-----VTQLKSMGFQK 57 +KI VL GGTS EREVSL SGA + + LR G +DP + +T +++ Sbjct: 2 EKIVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEIDPADYPKLSDLLTAVQNEQPLL 61 Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 VF LHG GE+G LQ L L G+ +TGSG AS SMDK SKL+ G+PV ++ + Sbjct: 62 VFNGLHGGSGENGELQAALSLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILM 121 Query: 118 TRAEFEKGLSDKQLAE-----ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ 172 E L D Q E + LGLP+IVKP+ GSSVG+S+V L+ A++ A Q Sbjct: 122 R----EDLLEDYQDVEDYSGFSNQLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQ 177 Query: 173 HDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEAS 232 + VL+E+++ G E TV I+ E P + I+P +YDY KY +T+Y PA ++ + Sbjct: 178 YSHSVLLEEYIPGRELTVTIIDSEAYPVVEIKPLEGWYDYTNKYTHGKTKYEAPAQIDDT 237 Query: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGM 292 LQ L+ W G G+ RID D + Y LE NT PGMTS SL PMAA+ AGM Sbjct: 238 VAKLLQLYALRLWKAFGLSGYARIDFRYDG-LKPYFLEVNTLPGMTSLSLTPMAAKAAGM 296 Query: 293 SFSQLVVRILELA 305 SF +L+ +I+ +A Sbjct: 297 SFQELLQKIIYIA 309 >UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYM6_UNCTG Length = 306 Score = 213 bits (542), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 173/304 (56%), Gaps = 10/304 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 KI VL GG S+ERE+S+ SG AVL ++ ++ +D ++K +IA Sbjct: 12 NKKIGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNRSIAEEIKKEKIDVAYIA 71 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDGT+QGMLE++G+PYTGSG+ ASA S+DK SK +++ A + W L + Sbjct: 72 LHGPMGEDGTIQGMLEILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKKF- 130 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + EI PV+VKP +GS++G++ V + A++ F++ +E LIE+ Sbjct: 131 -------GTVPEIKKY--PVVVKPVSQGSTIGVAIVKRPSEFAAAVKEVFKYGDEALIEQ 181 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 ++ G E TV +L + LP + I P G FYD++AKY +Q+ PAG+ +Q Sbjct: 182 FIEGKEVTVGVLNGKALPVVEIVPKGKFYDFKAKYQKGGSQHIIPAGISEEAYETVQNYA 241 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 K + C+ R+D+++D + ++ E NT PGMT SLVP +R G SF LV++I Sbjct: 242 EKVYEIFKCRAICRVDMIVDRKDRVWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKI 301 Query: 302 LELA 305 E A Sbjct: 302 TESA 305 >UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YDR1_DICT6 Length = 311 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 168/299 (56%), Gaps = 4/299 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 KI VL+G S+E+E++ + ++ L+ G D + E V +K I+ H Sbjct: 2 KIGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKANINVAIISAH 61 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G+ GEDGT+QG+LEL+G+PY GSGV+ASAL++DK +K ++ +P W+ L++ E E Sbjct: 62 GKYGEDGTIQGLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELE 121 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + + +S L P I+KP+ +GS++G+S E L + LAF++DE ++IE+++ Sbjct: 122 TKDLNNIVKNVSKLKKPWIIKPATQGSTIGLSLASTEEELLKGIELAFKYDENIIIEEYI 181 Query: 184 SGPEFTVAIL---GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 G E T I LP I I P FYDYE KY + + PA L Q L Sbjct: 182 KGKEITAGIYDINNPVCLPLIEIIPKTGFYDYETKYTPGLSDHIIPARLPKEVYEKAQGL 241 Query: 241 VLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + A LGC+ R+D++++ + Y+LE NT PGMT SL P AA+ G+ F +L+ Sbjct: 242 GILAHQALGCRHLSRVDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFPELI 300 >UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB14_9ACTN Length = 325 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/310 (43%), Positives = 178/310 (57%), Gaps = 14/310 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP-VDPKEVD-VTQLKSMGFQKVFIA 61 K+AVL GG S ERE+SL SG A L E G VDP E +++L++ + FIA Sbjct: 16 KVAVLAGGISDEREISLASGKNAAAALTEAGYGTVEMVDPGERGFLSRLENGNYDVAFIA 75 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GGEDG Q +LE +G+PYTGS +AS ++MDK SKLL++ AGLPVAP V TRA+ Sbjct: 76 LHGFGGEDGMTQHILEFLGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRAD 135 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 S ++ EI +G VKP GSS G+S V + L A+ LAF+H ++V++E Sbjct: 136 MP---SIDEIVEI--VGPQSFVKPVVNGSSYGISLVKDPSELTAAIELAFEHGDKVMVEH 190 Query: 182 WLSGPEFTVAILGE----EILPSIRIQ--PSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 + G E +VA LG+ LP + I FYD E KY + PA L A Sbjct: 191 RVFGVECSVAALGDGETLRALPVVEIMMPQQSEFYDLEVKYADPNDIHRIPAQLPEDVYA 250 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 +Q + +A LG G R DV++ DG +LE N PGMTS SLVP AR AG++FS Sbjct: 251 QVQDIACRAHEALGLFGISRTDVIVTEDGPI-ILETNNIPGMTSESLVPDEARHAGIAFS 309 Query: 296 QLVVRILELA 305 L ++ELA Sbjct: 310 DLCAELVELA 319 >UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium RepID=C8W8J3_ATOPD Length = 319 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 120/308 (38%), Positives = 179/308 (58%), Gaps = 9/308 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGG-IDAYPVDPKEVD-VTQLKSMGFQKVFIA 61 +AV+ GG S E E+++ SG A L+E G I+ +D E D V L + V++A Sbjct: 10 HVAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAEKDFVVALAQGDYDVVYVA 69 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 +HGR GEDG +QG+LE++ +PYT SGV+ASA+ +K SKL+++ AG+P + + Sbjct: 70 MHGRFGEDGCIQGLLEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPSGT 129 Query: 122 FEKGLSDKQLAE-ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 +D+Q+ + I LG P+ VKPS GSS G+++V + L AL+LA + E +LIE Sbjct: 130 V---FTDEQVDKLIEDLGFPMFVKPSGNGSSYGVTRVTSREELPAALKLAGEQGERILIE 186 Query: 181 KWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 + + G E TV ++G + LP + I FY + KY + PA LE + A Sbjct: 187 ECVVGTEITVPVIGNDNPTALPIVEIVTGDEFYSIKTKYEPASLHHVIPARLEPAVYARA 246 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Q L +KA LGC+G R D ++ DG+ +LE NT PGMT+ SL+P +AR G+ F +L Sbjct: 247 QELAIKAHNALGCRGVSRSDFIVTEDGEPVVLETNTIPGMTARSLLPDSARTGGIDFPEL 306 Query: 298 VVRILELA 305 R +E A Sbjct: 307 CTRFIEFA 314 >UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LL63_9FIRM Length = 311 Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/304 (39%), Positives = 174/304 (57%), Gaps = 8/304 (2%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--DPKEVDVTQLKSMGFQKVF 59 + +AVL+GG S E ++S +G A+L L G A V +P V + QLK++G + VF Sbjct: 5 NNTVAVLMGGVSREADISRKTGTAILQALLSLGYHAVKVEYNPSCV-LKQLKAVGAEVVF 63 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG+ GEDGT+Q +LEL +PYTGSGV +SA++MDK+ S +++ AG+ +A ++ Sbjct: 64 IALHGKYGEDGTIQSILELSKIPYTGSGVSSSAITMDKIISSRVFKDAGV----RMAFSK 119 Query: 120 AEFEKGLSDKQLAEISA-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 + K D I PV++KP+ EGS++G+ V + L++AL+ F + +L Sbjct: 120 PYYLKNGIDTVAESIEKNFKFPVVLKPACEGSTIGLEIVYEKEKLKEALKRVFAIESRIL 179 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 E +L G EFT+A+L + LP I+I P YD+ +KY S T Y PA L + + Sbjct: 180 AEAYLDGKEFTIAVLNGKALPIIQICPHSGQYDFHSKYTSGATDYIVPAPLPGAAADEMT 239 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + + + C G R D D G +LLEAN+ PGMT SLVP AA GM F L Sbjct: 240 RMAILGYEAAECSGVVRFDFRTDKRGTPFLLEANSIPGMTETSLVPKAAAAIGMDFPSLC 299 Query: 299 VRIL 302 IL Sbjct: 300 ENIL 303 >UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium RepID=DDL_CLOK1 Length = 297 Score = 206 bits (525), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 178/305 (58%), Gaps = 13/305 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--DPKEVDVTQLKSMGFQKVFIA 61 K+ +++GG S+EREVSLNSG +++ + + + P+ D K ++K + F FIA Sbjct: 2 KVGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVFEKVKDIDF--AFIA 59 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG+ GEDG +Q + + M +PY+G + S + MDK SK L A + A W+ + Sbjct: 60 LHGKFGEDGIIQSVFQTMDIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICI---- 115 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 K + + + +G PV+VKP+ GSSV + + +++A RLAF +DEEV+IEK Sbjct: 116 --KSIENIDYDYLEKMGYPVVVKPNSGGSSVATTIIEKSEDIEEAARLAFNYDEEVMIEK 173 Query: 182 WLSGPEFTVAILGEEILPSIRIQPS-GTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 ++ G E T IL LP + I+P+ G+F+DY +KY ++ E ++ ++ + Sbjct: 174 YIEGDEITCCILDGTALPILAIKPNKGSFFDYTSKYADGGSEEIV-VEFEKPLQSKIEEI 232 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 LK W CKG+ R+D++L D Y+LE NT PG+T +SL P +A +SF++L+ + Sbjct: 233 SLKCWELFKCKGYVRVDMIL-KDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELLDK 291 Query: 301 ILELA 305 I++ + Sbjct: 292 IIQCS 296 >UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae RepID=DDL_AQUAE Length = 291 Score = 206 bits (525), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 172/299 (57%), Gaps = 10/299 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++ VL+GG S+ERE+SL +G AV LRE G + Y +D + +L + KVFIALH Sbjct: 2 RVVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEIKPDKVFIALH 61 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDGT+QG+LE++ +PYTGS +ASA+S+DK +K + + G+ W E Sbjct: 62 GRYGEDGTVQGLLEILDIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDW--------E 113 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 +S+ + P +VKP REGSSVG+ V + L++ + E V++E+++ Sbjct: 114 TFISEGDVLNTEWNKFPAVVKPVREGSSVGLKIVESLEELKEYALDLLKKTERVMVEEFV 173 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G + TV IL E LP + I P YDYE KY ++Y + S+ LQ + LK Sbjct: 174 EGRDMTVGILKGEALPVVEIIPKKGVYDYECKYTKGMSEYRILKDEKLSK--KLQEISLK 231 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 L K + RID + +G+ + LE NT PGMT SL+PMAA++ GM F +L+ I+ Sbjct: 232 ISKFLSLKDFARIDFRVTKEGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATM1_RUBXD Length = 318 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 176/308 (57%), Gaps = 7/308 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL GG S ER+VSL +G V L G + +P+D +E +L + VF+ LH Sbjct: 3 RLAVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERLIELEPAAVFVCLH 62 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT-RAEF 122 G GGEDGT+Q +LE +G+PYTGSG ++S MDK +K AGLP + RA Sbjct: 63 GPGGEDGTVQALLETLGIPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMN 122 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 E G + +LG P++VKP+REGSS G+S+V L DA+ AF +D ++L+E+W Sbjct: 123 EMGAAAALNVAADSLGYPLVVKPAREGSSFGLSRVERPEELLDAVYEAFGYDAKILLERW 182 Query: 183 LSGPEFTVAIL---GE--EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 + G E +V IL GE L + I+P Y+++AKY T + PA L + L Sbjct: 183 VEGREVSVPILEPAGEAPRALGLVEIRPREGAYNFQAKYTPGMTDFAIPAELPPGTASRL 242 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 + L + TLGC G+ R+D +++ + +L+ T PG T S P+AA AG+SF +L Sbjct: 243 EETALAVYRTLGCSGFARVDTIVEGETP-QVLDVKTIPGFTETSTFPLAAEAAGLSFERL 301 Query: 298 VVRILELA 305 V IL+ A Sbjct: 302 VEIILDSA 309 >UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYH7_9PROT Length = 307 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 126/305 (41%), Positives = 166/305 (54%), Gaps = 21/305 (6%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 + VL+GGTSAEREVSL SGAAVL LR G+DA +D ++ Q+ FIALH Sbjct: 13 RTGVLMGGTSAEREVSLRSGAAVLDALRAAGVDAVGIDLQQNWADQIAKAAIDTAFIALH 72 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGL--PVAPWVALTRAE 121 G GEDG +QG+LE+MG+PYTGS VMASAL M+K K + AGL P+ + +T E Sbjct: 73 GTLGEDGCVQGLLEIMGIPYTGSHVMASALCMNKRLCKQVLGQAGLSTPMDIRIEVTGPE 132 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 PV VKP EGSSVG+ ++ ++ Q L Q + E Sbjct: 133 R----------------YPVFVKPVAEGSSVGLHRISSQQEWQ---ALNIQSPAAWMAEM 173 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 ++G E V++L L + + P YDY +KY T+YFCPA L Sbjct: 174 PVNGVEIAVSVLAGVALMPVEVAPKSGVYDYASKYTVGATEYFCPARLPMETVRYCMDCA 233 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 KA GC G R+D+++ S G+ +LE NT PGMT+ SL+P AA AG+ F L +RI Sbjct: 234 EKAVAACGCTGAPRVDMIVGSGGEAVILEINTLPGMTATSLLPKAAAVAGIDFQTLCLRI 293 Query: 302 LELAD 306 LE A Sbjct: 294 LETAS 298 >UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidiphilum infernorum V4 RepID=DDL_METI4 Length = 303 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 168/304 (55%), Gaps = 20/304 (6%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLK---SMGFQKVFIA 61 IAVL GG S ERE+SL + AV L G + +DVT K + F+ Sbjct: 9 IAVLKGGPSEEREISLRTAKAVEDALSSLGYEI-----SSIDVTTEKFEIPRDAEICFLC 63 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 +HG GEDG +Q +L G+P+TGS +S + DK SK L+ G+P P+ + Sbjct: 64 IHGSFGEDGQIQRLLMRRGIPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPFCVVGDG- 122 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 K++ P ++KPSR+GSS+G+ V L A++ + Q+D VL E Sbjct: 123 -------KKIP----FDPPYVIKPSRQGSSIGIEFVYDIKELDQAIKKSTQYDHVVLAEA 171 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 ++G E TV IL + LP + I+P FYDY KY + YFCPA L Q + +Q Sbjct: 172 LITGKELTVGILDGKALPVVEIKPKEGFYDYHHKYTKGASTYFCPAPLTVDQTSAVQKTA 231 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L A+ LGC +GR+D++L +G ++LE NT PGMT SL PMAA+ +GM+F+QL +I Sbjct: 232 LDAFNVLGCSVYGRVDIILSDNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKI 291 Query: 302 LELA 305 LE++ Sbjct: 292 LEIS 295 >UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogaceae RepID=DDL_FERNB Length = 316 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/316 (36%), Positives = 183/316 (57%), Gaps = 21/316 (6%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGG--IDAYPVDPKEV-DVTQLKSMGFQKVFIA 61 + VLLGG S ERE+S+ SG + LR G +D VD + +++LK + +F Sbjct: 3 LGVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSELKK--YDALFNI 60 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQG--------AGLPVAP 113 LHG GEDG +Q +L+ +G+PYTGSGV S ++ DK L + + + + Sbjct: 61 LHGTFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPN 120 Query: 114 WVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH 173 ++ ++ EFE+ S + E +GLP +VKP +EGSS+G ++ L DAL+ F++ Sbjct: 121 FLLISSEEFEE--SKIYMIE-EKIGLPCVVKPRKEGSSIGTHICFSKEELLDALKNEFKN 177 Query: 174 DEEVLIEKWLSGPEFTVAILG----EEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGL 229 +E+++++++ G E TV+++ +LP + ++P FYDYEAKY T++ PA L Sbjct: 178 YDEMIVQEYIKGKEITVSVIDINGTPTVLPILELRPKKLFYDYEAKYTDGMTEFIIPAEL 237 Query: 230 EASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQ 289 + + VLK + +LGCK + RID ++ DG FY LE NT PGMT S +PM+A Sbjct: 238 DGETTEKINHAVLKIYKSLGCKHFSRIDGIV-KDGVFYFLEVNTLPGMTELSDLPMSANA 296 Query: 290 AGMSFSQLVVRILELA 305 G+SF +LV I++ A Sbjct: 297 FGISFDELVDLIIKEA 312 >UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcus sp. MC-1 RepID=DDL_MAGSM Length = 310 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/304 (41%), Positives = 162/304 (53%), Gaps = 9/304 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 KI VL GG S EREVSL SG A+ L+ G +D L+ G + +ALH Sbjct: 7 KIGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRHITKVLEREGIEVAVLALH 66 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDGT+QG+LE MG+PYTG V ASA+ MDK SK L+ GLP W+ L E Sbjct: 67 GPMGEDGTIQGLLEFMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHEE 126 Query: 124 KG-LSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 L D L + VKP GSSVG+S+ V ++ L + A ++E+ Sbjct: 127 ADELVDHFLGDFHGAAF---VKPLDSGSSVGISRAVGKDELIRGVAKALSVSHRCMVERA 183 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV- 241 + G E T++IL E P I I P FYDY+ KY + T Y PA + +L+A+V Sbjct: 184 IEGRELTLSILDGEAFPLIEIVPIDGFYDYDHKYTAGRTNYLVPA--PNLDDKSLEAVVK 241 Query: 242 --LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 L A+ GC+G R D +LD +G +LLE NT PGMT SL P AA G+ QL Sbjct: 242 IGLAAYHITGCRGLVRADFILDGEGTPWLLELNTIPGMTELSLAPKAAHAVGIEMPQLAE 301 Query: 300 RILE 303 RIL+ Sbjct: 302 RILQ 305 >UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ellin514 RepID=B9XIG4_9BACT Length = 304 Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 175/304 (57%), Gaps = 15/304 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 KI V+LGG SAEREVSL +G AV LR G +DPKE + G + VF+ALH Sbjct: 11 KITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSL--PAGTEVVFLALH 68 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDGT+Q L+ +G+PYTG AS L DK+ +K AG+P A ++ Sbjct: 69 GTYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIF------ 122 Query: 124 KGLSDKQLAEISALGL--PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + + + +G PV++KP R+GSSVG+ V L A ++D +VL+E+ Sbjct: 123 -----ESRSAVWPMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEALRYDTQVLMEE 177 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E TV ILG LP + ++P YDY+ KY + T+Y CPA + + A +Q Sbjct: 178 RILGRETTVGILGNRPLPIVEVRPKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAA 237 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L A+ +G + + R+DVM+ +G+ +LE NT PGMT SL+P AA AG+ +++L ++ Sbjct: 238 LGAFKAIGGRDYSRVDVMVRPNGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQM 297 Query: 302 LELA 305 ++LA Sbjct: 298 VDLA 301 >UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N436_9BACT Length = 702 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/306 (39%), Positives = 175/306 (57%), Gaps = 21/306 (6%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQK----VF 59 KI +LLGG S ERE+SL SG+AV LR GG D DVT+ + + + V+ Sbjct: 316 KINLLLGGASNEREISLKSGSAVAQALRNGGFDV-----TVTDVTECRLLPEMREADVVY 370 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 LHG GEDG +Q ++E GL + GSG AS L+MDK+ +K L G+P A W +TR Sbjct: 371 PVLHGGFGEDGRIQKVMEEAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTR 430 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 ++L + L LP+I+K EGS+ G+ KV AL F E+L+ Sbjct: 431 -------DRRELPQ--NLKLPLILKVPMEGSTFGIVKVERAEEWDAALEKEFAMAGELLV 481 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDE--TQYFCPA-GLEASQEAN 236 E+++ G E TV I+ E+LP+I I+ FYDY+AKY+ + T+YFCPA L A Q A+ Sbjct: 482 EEYIDGIEITVPIVNGEVLPAIEIKSPHGFYDYDAKYVYKDGHTEYFCPARSLSAEQVAD 541 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 +K + GC+ R+D ++ DG Y+LE N+ PG T+ SLVP AA+ +G+SF + Sbjct: 542 ASRQAVKFYLGAGCRDILRVDFIVGKDGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEK 601 Query: 297 LVVRIL 302 + ++ Sbjct: 602 MTATLV 607 >UniRef50_C3WFS8 D-alanine-D-alanine ligase n=6 Tax=Fusobacterium RepID=C3WFS8_FUSMR Length = 288 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 119/296 (40%), Positives = 162/296 (54%), Gaps = 19/296 (6%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIAL 62 KIAV +GG S+EREVSL SGAA+L L+ G DAY VD E + V+ + +IA Sbjct: 2 KIAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTEKNLVSAFTENEYDLAYIAF 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GE+GT QG+L+++G PYTGSG M SA++MDK +K + G+ A Sbjct: 62 HGGYGENGTFQGLLDMLGKPYTGSGAMESAITMDKAYTKAVANSVGIKTAKTYNC----- 116 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + EI PV+VKPSR+GSSVG+ + +++ALR + LIE+ Sbjct: 117 --------VEEIK--DFPVVVKPSRDGSSVGIYFCNTQEEVREALRAL--EGRKPLIEEM 164 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E TV +L E L +RI P FYDYE+KY + + + PA ++ + + Sbjct: 165 IQGEELTVGVLNGEGLGVLRIIPKNKFYDYESKYAAGGSIHEYPAKIDKAAYDKAMENAV 224 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 K +G KG R D ML DG+ Y LE NT PGMT SL+P G +F LV Sbjct: 225 KIHNVIGLKGISRSDFML-KDGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLV 279 >UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W6_9ZZZZ Length = 343 Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 135/344 (39%), Positives = 181/344 (52%), Gaps = 53/344 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGL-REGGI----------------DAYPVD----- 41 KI VL GG S ER+VSL SGA + L R G + DA+ D Sbjct: 6 KITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDAFTSDGNFMY 65 Query: 42 --PKEV-DVTQLKS-------MG---------FQKVFIALHGRGGEDGTLQGMLELMGLP 82 PKE D+ L++ +G VF+ALHG GEDG++Q L MG+P Sbjct: 66 TVPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSMGIP 125 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 YTGS A ++MDK SKLL++ G+P A + L + + G+ LP + Sbjct: 126 YTGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKKGDSTDGIP-----------LPCV 174 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR 202 VKP GSSVG+S V + AL AL A+Q++E+VL E + G EF+V +L LP+I Sbjct: 175 VKPCSCGSSVGVSIVDTKEALAGALETAYQYEEKVLAEDKICGREFSVGVLLGRALPAIE 234 Query: 203 IQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 I+P FYDYE KY S T+ CPA L ++ A+L AL LK LG + RID + + Sbjct: 235 IRPKDGFYDYERKYQSGMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDFIREE 294 Query: 263 D-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G+F LEANT PGMT SL+P A AG+ + L + I + A Sbjct: 295 KTGKFICLEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338 >UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria RepID=DDL_CLOTH Length = 376 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 104/262 (39%), Positives = 162/262 (61%), Gaps = 10/262 (3%) Query: 51 KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLP 110 KS VF LHG GEDGT+QG+ EL G+PY G GV+ASA+ MDK+ +K++++ AG+P Sbjct: 105 KSKKIDVVFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIP 164 Query: 111 VAPWVALTRAEFE---KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL 167 A ++ TR E +G+ DK + S PV VKPS GSSVG+SK +N L++AL Sbjct: 165 QADYLYFTRKEIYGDVEGVVDKIEEKFS---YPVFVKPSNAGSSVGVSKAHDKNELKEAL 221 Query: 168 RLAFQHDEEVLIEKWLSGPEFTVAILGEE--ILPSI-RIQPSGTFYDYEAKYLSDETQYF 224 A ++D +VLIE++++G E A+LG + + ++ I P FYDY+AKY+ + ++ Sbjct: 222 IYAARYDRKVLIEEFINGREVECAVLGNDDPVASTVGEIIPGNEFYDYKAKYIENTSKIK 281 Query: 225 CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLV 283 PA L ++ +KA+ L C G R+D + + G+ Y+ E NT PG TS S+ Sbjct: 282 IPADLPEETVEQIRNYAVKAFKALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMY 341 Query: 284 PMAARQAGMSFSQLVVRILELA 305 PM ++G+S+ +L+ ++++LA Sbjct: 342 PMLWEESGISYPELIEKLIDLA 363 >UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular organisms RepID=DDL_BACAA Length = 304 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 175/301 (58%), Gaps = 10/301 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-VDVTQLKSMGFQKVFIAL 62 +I V++GG S+E++VS+ +G ++A L + + P+ E +D+ + K+ +AL Sbjct: 2 RIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIE-KAKDIDFALLAL 60 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG+ GEDGT+QG LE +G+PY+GS +++S + MDK SK + + G+ W+ LT+ E Sbjct: 61 HGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKME- 119 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 D E+ LG P++VKP+ GSSVG+ V ++ L L F+ D EV+IEK+ Sbjct: 120 -----DLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKY 174 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E T +I + LP I I+ + F+DY AKY D + L A + + L Sbjct: 175 IKGEEITCSIFDGKQLPIISIRHAAEFFDYNAKY-DDASTIEEVIELPAELKERVNKASL 233 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 + L C + R+D+M+ DG Y++E NT PGMT SL+P +A AG+ +S+L+ I+ Sbjct: 234 ACYKALKCSVYARVDMMV-KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMII 292 Query: 303 E 303 E Sbjct: 293 E 293 >UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4ECT1_9ACTN Length = 321 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/309 (39%), Positives = 168/309 (54%), Gaps = 14/309 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD--VTQLKSMGFQKVFIA 61 +AVL GG SAERE+SLNSG V+ L+E G + + D + + + GF FIA Sbjct: 10 HVAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVELIDTAADDFMVTMATGGFDVAFIA 69 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 +HG GGEDG +QG +E +G+PYT SGV+ASA DK SKLL+ AG+P+AP +AL E Sbjct: 70 MHGAGGEDGAMQGAMETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLAL---E 126 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + + E+ G VKP+ GSS G+S V + L A+ AF + ++VL+EK Sbjct: 127 VGDEVDIDHIVEVC--GERCFVKPAVNGSSYGISLVHEPSELPAAIAKAFAYGDKVLVEK 184 Query: 182 WLSGPEFTVAILGEE---ILPSIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 + G E TV + GE+ LP + I+ FYD + KY+ + PA + A Sbjct: 185 CIEGTEITVGVYGEDDVRALPIVEIRKPEDCEFYDLDVKYVDPTDIHRIPAQISPENYAR 244 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQA-GMSFS 295 Q L A LGC G R D ++ DG +LE NT PGMT SL P R M+F Sbjct: 245 AQELACAAHKALGCLGISRSDFIVSEDGPV-ILETNTIPGMTDTSLYPDEIRHTDDMTFP 303 Query: 296 QLVVRILEL 304 Q+ ++ + Sbjct: 304 QVCDSLIRM 312 >UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWP4_9CLOT Length = 293 Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 167/298 (56%), Gaps = 8/298 (2%) Query: 9 LGGTSAEREVSLNSGAAVLAGL-REGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGG 67 +GG S+ERE+SL SGA V L RE V ++ D+ F+ALHG+ G Sbjct: 1 MGGISSEREISLKSGAGVFESLDREKYEPIKVVIDEKTDIITKIPDDVDFAFLALHGKFG 60 Query: 68 EDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLS 127 EDG +Q +LE +PY+G G ++SA+ MDK SK + + +G+P A W+ + K + Sbjct: 61 EDGCVQSVLETRDIPYSGCGPLSSAMCMDKNISKKICKASGIPTADWITV------KSIE 114 Query: 128 DKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPE 187 + I +G PV VKP+ GSSV + + ++DA+R + D EV+IE++L G E Sbjct: 115 EIDYDRIEEMGYPVFVKPNSGGSSVATFMIKEKAGIEDAVRQGLEVDTEVMIEQYLPGEE 174 Query: 188 FTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTT 247 T IL E+ P++ I+ F+D+EAKY SD LE S + L W Sbjct: 175 CTSFILDGEVFPTVSIKSEQEFFDFEAKYSSDNGAVEEVVYLEESLQNKLNGYSRMCWDA 234 Query: 248 LGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C+ + R+D ++ S+G Y+LE NT PG+T+ SL+P +A G+S+SQL+ +++ + Sbjct: 235 FNCRAYVRVDFII-SNGVPYVLELNTLPGLTATSLIPRSAAARGISYSQLLDKLISCS 291 >UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteobacteria RepID=DDL_ROSDO Length = 319 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 162/305 (53%), Gaps = 15/305 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG S EREVSL+SG A A LR+ G D +D +L G V LH Sbjct: 23 KVAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLH 82 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +QG+LE MG+PY+ SGV+ASAL+MDK RSK + AGLPV P V A+ Sbjct: 83 GRWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVR 142 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 G + P +VKP+ EGSSVG+ V A +L+ +EV++E + Sbjct: 143 MG---------HVMQPPYVVKPNNEGSSVGVYLV--HEAANGPPQLSEDMPQEVMVEAFA 191 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E T ++G+ L I G +YDY+AKY + + PA + A L+ Sbjct: 192 PGRELTTTVVGDRALTVTDIVTDG-WYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALR 250 Query: 244 AWTTLGCKGWGRIDVMLDSD---GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 A LGC+G R D D LLE NT PGMT+ SL P A GM+F +L Sbjct: 251 AHHALGCRGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAW 310 Query: 301 ILELA 305 ++E A Sbjct: 311 MVEDA 315 >UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C8F Length = 358 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/343 (37%), Positives = 175/343 (51%), Gaps = 55/343 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-------KEV----------- 45 KI VL GG S EREVSL+SG+ + L E G + + +DP +EV Sbjct: 19 KIIVLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWPGIREGEEVRYRTREEGYHF 78 Query: 46 ---------DVTQLKS-MGFQK----------------VFIALHGRGGEDGTLQGMLELM 79 D+ +L++ G +K VFIALHG GEDG +Q +LE Sbjct: 79 SSEIGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLEAY 138 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 G+P+TGS L+MDK SK+ + AG+ W EKG + + L Sbjct: 139 GIPHTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLA-----EKGKTSRPDF------L 187 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILP 199 P +VKP GSSVG++ V E AL AF H VL+EK ++G EF+V +LG+ LP Sbjct: 188 PCVVKPLDCGSSVGVTIVEREEEWSAALEAAFSHGGRVLVEKKITGREFSVGVLGDRALP 247 Query: 200 SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 +I I P FYDY+ KY T+ CPA ++ QE ++ L L + R+D M Sbjct: 248 AIEIIPESGFYDYQNKYQPGMTREICPAWIDGMQEVKMKETALTVHRILELGYYSRVDFM 307 Query: 260 LDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +D DG Y LEANT PGMT SL+P A+ AG+++ +L I+ Sbjct: 308 MDEDGAIYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIV 350 >UniRef50_A6CDT2 D-alanine--D-alanine ligase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CDT2_9PLAN Length = 320 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 169/304 (55%), Gaps = 10/304 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 T I VL GG SAE E+SL SG V L G VDP VD+ + G VF+A Sbjct: 11 TFNIVVLSGGESAESEISLKSGETVARALSSRGHQVKIVDPSLVDLDRFDWTGCDVVFLA 70 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDGT+Q L+ +G+PY+G S L+ K SK + + +V + ++ Sbjct: 71 LHGTYGEDGTIQSTLDRLGIPYSGCDAATSKLAFSKSASKERFIQHNVNTPSYVLIHESD 130 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + G ++ ++G P++VKP +GSS+G++ V + L AL F +D ++E Sbjct: 131 -DAGRIEQHA---RSMGYPLVVKPDAQGSSLGVTIVKSPEELPQALARCFHYDSFGILES 186 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E+TV ++ +++LP I+IQ F+DYEAKY D TQY L + +QA++ Sbjct: 187 AIKGTEWTVTVVDDQVLPLIQIQTPHEFFDYEAKYTEDSTQYLFEFDLPTNV---IQAII 243 Query: 242 ---LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + A T LG G R+D+++D Q ++LE NT PG T HSLVP AA +AG+ F +L Sbjct: 244 KTGVNACTALGTTGIVRVDLLVDRFQQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGELC 303 Query: 299 VRIL 302 + L Sbjct: 304 EQAL 307 >UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia muciniphila RepID=D2N2G7_9BACT Length = 316 Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 168/308 (54%), Gaps = 17/308 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGL-REGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 KIA+LLGG AEREVSL SG +V L R G D VD D + G + + + Sbjct: 14 KIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVHGPDFRLPE--GTELAYNII 71 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDGTLQ +LE G+PYTG+G +SAL +K SK ++ AG+P AE Sbjct: 72 HGTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTP------HAEI 125 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 L + +L LP ++KP EGSSVG+ V + + A+ A H VL+E++ Sbjct: 126 ---LDCSNGIVMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEEF 182 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY----LSDETQYFCPAGLEASQEANLQ 238 + G E TV IL + LP I I P FYD KY + T Y CPA L AN+Q Sbjct: 183 IQGKELTVGILDGKALPVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQ 242 Query: 239 ALVLKAWTTLGCKGWGRIDVML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 LKA+ G + +GR+DV+L + DG ++LE NT PGMT SL+P AA +G + L Sbjct: 243 EAALKAYKAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDL 302 Query: 298 VVRILELA 305 +I EL+ Sbjct: 303 CEKIAELS 310 >UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrobiaceae RepID=B2UPW3_AKKM8 Length = 311 Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 126/308 (40%), Positives = 168/308 (54%), Gaps = 17/308 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGL-REGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 KIA+LLGG AEREVSL SG +V L R G D VD D + G + + + Sbjct: 9 KIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVHGPDFRLPE--GTELAYNII 66 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDGTLQ +LE G+PYTG+G +SAL +K SK ++ AG+P AE Sbjct: 67 HGTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTP------HAEI 120 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 L + +L LP ++KP EGSSVG+ V + + A+ A H VL+E++ Sbjct: 121 ---LDCSNGIVMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEEF 177 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY----LSDETQYFCPAGLEASQEANLQ 238 + G E TV IL + LP I I P FYD KY + T Y CPA L AN+Q Sbjct: 178 IQGKELTVGILDGKALPVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQ 237 Query: 239 ALVLKAWTTLGCKGWGRIDVML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 LKA+ G + +GR+DV+L + DG ++LE NT PGMT SL+P AA +G + L Sbjct: 238 EAALKAYKAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDL 297 Query: 298 VVRILELA 305 +I EL+ Sbjct: 298 CEKIAELS 305 >UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes RepID=A9KQG5_CLOPH Length = 340 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 173/345 (50%), Gaps = 54/345 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGG-----------------IDA--------- 37 K+ VL GG S EREVSL+SG+ + L E G ID+ Sbjct: 2 KVVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQN 61 Query: 38 ---YPVDPKEVDVTQLK-----------------SMGFQKVFIALHGRGGEDGTLQGMLE 77 Y V +E ++T+LK KVF+ALHG GE+G LQ M + Sbjct: 62 PYQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMFD 121 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 + G+ YTGSG + S L+MDK SK++ Q G+ ++ L+++Q E L Sbjct: 122 IYGISYTGSGYIGSLLAMDKGLSKVIMQKHGIETPDYIV-------ADLTEEQELE-KTL 173 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI 197 LP ++KP GSSVG+S V ++ L AL A +++ +VLIE+ + G EF+V IL Sbjct: 174 MLPCVIKPLSCGSSVGVSIVRSQEELGKALDYAKKYENKVLIEELIVGREFSVGILNHHA 233 Query: 198 LPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 LP I I P FYDY KY + CPA LE +Q LK L + R+D Sbjct: 234 LPLIEIIPKTGFYDYTNKYQAGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSRVD 293 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +L DG FY LEANT PGMT SL+P A G+S+S+L IL Sbjct: 294 FLLKEDGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKLCELIL 338 >UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus Pelagibacter RepID=DDL_PELUB Length = 304 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 171/304 (56%), Gaps = 7/304 (2%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 MT KI +L GG S ER +SL++G V L + G +P + + S +F Sbjct: 1 MTKKILILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFN 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG+ GEDG +Q +LE +PYT SGV+AS+++MDK SK ++ + ++ Sbjct: 61 ALHGQFGEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFNHK 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + L+ +L E L PV+VKP EGSSV + N L++ L++ ++ E+LIE Sbjct: 121 --KNKLNIIKLIE-KNLKFPVVVKPINEGSSVHVYICDKTNILKN-LKVLKSYN-EILIE 175 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSD-ETQYFCPAGLEASQEANLQA 239 +++ G E VAI+ + L +I ++P FYDYEAKY S +T++ P L + A + Sbjct: 176 EFIPGREIQVAIMNNKSLGAIELEPRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITG 235 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + A +GCKG R D +G+FYLLE NT PGMT SLVP A+ G+SF +L+ Sbjct: 236 IARAAHKIIGCKGVTRSDFKF-FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIE 294 Query: 300 RILE 303 IL+ Sbjct: 295 WILK 298 >UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria RepID=DDLA_PSEAE Length = 346 Score = 189 bits (481), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 126/336 (37%), Positives = 178/336 (52%), Gaps = 44/336 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD---------------------- 41 K+AVL GG+S ER+VS+ SGA V+ LR G VD Sbjct: 7 KVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEV 66 Query: 42 PKEVDVTQLKSMGFQKV------------FIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 P + D + G Q + F+ALHG GEDGTLQ +L+ G YTGSG + Sbjct: 67 PPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHL 126 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 ASA++MDK +K L+ AG+ A W+ +E E LG P++VKP+ +G Sbjct: 127 ASAMAMDKDVAKRLFLAAGVETASWLMAPASEEEV---------REQLGFPLVVKPNSQG 177 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGT- 208 S+VG+S V ++ LQ A+ LA ++ +EV++E++++G E TV +L ++ LP I G Sbjct: 178 STVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQE 237 Query: 209 FYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYL 268 +DYE KY + + PA L + A Q L LK L G+ R D LD G+ + Sbjct: 238 VFDYEHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGRLWC 297 Query: 269 LEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 LE NT PGMT+ SL+P AA AG+ F++L RI L Sbjct: 298 LEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRL 333 >UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales RepID=DDL_STAA1 Length = 356 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 112/341 (32%), Positives = 178/341 (52%), Gaps = 41/341 (12%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD----------PKEVDVT-QLK 51 + I ++ GG SAE EVS+ + VL + + D Y VD K+ ++T ++K Sbjct: 4 ENICIVFGGKSAEHEVSILTAQNVLNAIDK---DKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 52 SMG------------------------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 S + VF LHG GEDGT+QG+ E++ +PY G+G Sbjct: 61 STDELHLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNG 120 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 V+++A SMDKL K L++ GLP P+++ R+E+EK + L PV VKP+ Sbjct: 121 VLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPAN 180 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI---RIQ 204 GSSVG+SK E L++ ++ AFQ D +++IE+ ++ E VA+LG + + + Sbjct: 181 LGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVV 240 Query: 205 PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDG 264 FYDY++KY + Q PA L+ + L+ + L+A+ C G R D + D Sbjct: 241 KDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDN 300 Query: 265 QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 Q Y+ E N PG T+ S+ P G+S+ +L+ +++ELA Sbjct: 301 QIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M663_9BACT Length = 321 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 131/310 (42%), Positives = 167/310 (53%), Gaps = 12/310 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD---PKEVDVTQLKSMGFQKVFI 60 KI VL GG S EREVSL SG AV L+ G + +D P++V LK+ F Sbjct: 6 KIVVLYGGNSPEREVSLVSGQAVEKALKSAGYETELIDLTGPEKV-FEALKTP-CDLFFP 63 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GEDG LQ L+L G PY GSG +AS L MDK SK L+ AGL P L R Sbjct: 64 VLHGSWGEDGRLQAALDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHT-PKGVLVRQ 122 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF-QHDEEVLI 179 + G L + G +IVKP+ GS+V S V L AL A+ Q L+ Sbjct: 123 KDGTGDLPGLLRALERYG-KLIVKPNCGGSTVATSVVSCSEELLPALNAAWEQKSGGALV 181 Query: 180 EKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+++ G E TVA+ G E LP++ I P+ FYDY+AKY ++Y PA L + Sbjct: 182 EEFIPGRELTVAMWDSGSGPEALPAVEILPASGFYDYQAKYTDGASRYESPARLSGEEAR 241 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 L + AW +G + +GR D L DG+ LLE NT+PGMTSHSLVPMAA+ AGM Sbjct: 242 ALSEAAVAAWRAVGLRDYGRADFRLPPDGEPVLLEINTAPGMTSHSLVPMAAKSAGMELP 301 Query: 296 QLVVRILELA 305 + R+ A Sbjct: 302 DFLSRLARRA 311 >UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobacteria RepID=DDL_CAUSK Length = 322 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 135/314 (42%), Positives = 175/314 (55%), Gaps = 22/314 (7%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQ-LKSMGFQKVFI 60 IAVLLGG SAEREVSL +GAA A L G VDP + DV Q L ++ VF Sbjct: 11 NHHIAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVDPGK-DVAQVLTALAPDLVFN 69 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHGR GEDG +QG+LE +GL YT SGV+ASAL+MDK +SK + AG+PV Sbjct: 70 GLHGRWGEDGCVQGVLETLGLAYTHSGVLASALAMDKAKSKAVLAAAGIPVP-------- 121 Query: 121 EFEKGLSDKQ-LAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLA---FQHDEE 176 GL D+ +A+ + P +VKP+ EGSSVG+S +V E A +LA + E+ Sbjct: 122 --GGGLFDRHDVAQGHVMPPPYVVKPNAEGSSVGVS-LVFEGANGPPRQLAAPDWAFGEQ 178 Query: 177 VLIEKWLSGPEFTVAILGEEILPS----IRIQPSGTFYDYEAKYLSDETQYFCPAGLEAS 232 V++E ++ G E VA++GE P I+ S FYDY+AKY + + PA + + Sbjct: 179 VMVEPYIPGLELAVAVVGESNGPRALAVTEIRSSTGFYDYDAKYSQGGSIHVLPAPIPDA 238 Query: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAG 291 L T LGC+G R D D + LLE NT PGMT SLVP A AG Sbjct: 239 VRDRALHLAKLGHTALGCQGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAG 298 Query: 292 MSFSQLVVRILELA 305 +SF +LV I+E A Sbjct: 299 VSFDRLVFWIVEDA 312 >UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizobium japonicum RepID=DDLA_BRAJA Length = 373 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 180/357 (50%), Gaps = 52/357 (14%) Query: 1 MTDKI--AVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-----------DPKEVD- 46 M DKI VL GG S E EVSL S A+V L + PV D + +D Sbjct: 1 MADKIRVVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQ 60 Query: 47 -----------------------------VTQ--LKSMGFQKVFIALHGRGGEDGTLQGM 75 +TQ + VF +HG EDGT+QG+ Sbjct: 61 AHAAALPILPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGL 120 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 LEL + Y GSGV+ASA+SMDK +K L + AG+PVAP+ LTR F + + Sbjct: 121 LELADVAYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVE 180 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE 195 L LPV VKP GSSVG+ KV ++AL+ AL AF++D +VL+++ + E VA+L + Sbjct: 181 GLSLPVFVKPCNMGSSVGIHKVKTQDALEAALDDAFRYDVKVLVQQGIDAREIEVAVLED 240 Query: 196 EIL-----PSIRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLG 249 E L + FY YEAKYL D + PA L+A+Q +++L + + L Sbjct: 241 ETLFASLASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALE 300 Query: 250 CKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C G+ R+D LD G+F E NT PG TS S+ P +G+ + +L+ R+++LA Sbjct: 301 CSGFARVDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVDLA 357 >UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira biflexa serovar Patoc RepID=DDL_LEPBA Length = 349 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/352 (35%), Positives = 185/352 (52%), Gaps = 59/352 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------------DPK- 43 KIA+L GG S E +S+ S A + A + D PV DP Sbjct: 5 KIALLFGGISGEHIISVRSSAFIFATIDREKYDVCPVYINPNGKFWIPTVSEPIYPDPSG 64 Query: 44 --EVDVTQ----------------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTG 85 E++ Q + MGF F+ LHG GEDG +QG L+ +G+P+TG Sbjct: 65 KTEIEFLQEFNKANAIVSPSEPADISQMGFLSAFLGLHGGAGEDGRIQGFLDTLGIPHTG 124 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD--KQLAEISALGLPVIV 143 SGV+AS+L+MDK R+ +L++ G+PVAP++ E EKG +D K L +S PV + Sbjct: 125 SGVLASSLAMDKYRANILFEAMGIPVAPFL-----ELEKGKTDPRKTLLNLS-FSYPVFI 178 Query: 144 KPSREGSSV--GMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEI 197 KP+ GSSV GM+K AE A+ ++ F D+ VL++K +SG E ++ +L G++ Sbjct: 179 KPTLGGSSVNTGMAK-TAEEAMTLVDKI-FVTDDRVLVQKLVSGTEVSIGVLEKPEGKKR 236 Query: 198 LP----SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 P I+P F+D+EAKY ++ PA + LQ L+ LGCKG+ Sbjct: 237 NPFPLVPTEIRPKSEFFDFEAKYTKGASEEITPAPVGDEVTKTLQEYTLRCHEILGCKGY 296 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R D ++ SDG Y+LE NT PGMT SL+P A+ G++ + +LE++ Sbjct: 297 SRTDFII-SDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWLLEIS 347 >UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteobacteria RepID=DDL_RHOP5 Length = 308 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 168/308 (54%), Gaps = 15/308 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 +AVLLGG S+EREVSL SG A L G + +D T L + + LH Sbjct: 6 HVAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARDIATVLDQLRPDSALMMLH 65 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG++QG+LE + +PY+ SGV+ASAL+M K +K + + AG+PVA + L+R E Sbjct: 66 GHPGEDGSIQGVLETLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLSRDEIA 125 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENAL--QDALRLAFQHDEEVLIEK 181 +G + P ++KP +GSSVG+ + ++ Q+ R + + +++L+EK Sbjct: 126 RG---------HVMEPPYVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDKLLVEK 176 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 +++G E T A++ E I I P FYDYEAKY +++ PA L ++ L Sbjct: 177 YVAGKELTCAVVKGEPTDVIEIVPMVRFYDYEAKYSPGASKHVLPASLLPFVYQEVRRLT 236 Query: 242 LKAWTTLGCKGWGRIDVMLDS----DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 L A LGC+G R D D G LE NT PGMT SLVP A AG++F +L Sbjct: 237 LAAHVALGCRGVSRADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGITFDEL 296 Query: 298 VVRILELA 305 V ++E A Sbjct: 297 VQWMVEDA 304 >UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W7_9ZZZZ Length = 348 Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 127/343 (37%), Positives = 175/343 (51%), Gaps = 51/343 (14%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA--------YPVD--PKEVDVTQL--- 50 KIAVL GG S+ER+VSL++G V LRE G D +P+D P+EV L Sbjct: 2 KIAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLVDACVDFPLDCRPEEVFEKALPIE 61 Query: 51 ----------------KSMGF------------QKVFIALHGRGGEDGTLQGMLELMGLP 82 ++ GF VF ALHG GE+G LQ + +L+ + Sbjct: 62 NHAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLLNIC 121 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDK-QLAEIS-ALGLP 140 YTGSG L+M+K SK L++ G+P V L+ SDK + AE+ LGLP Sbjct: 122 YTGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSE-------SDKCRAAELCEKLGLP 174 Query: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPS 200 +VKP+ GSSVG+S V + AL AF + V++EK++ G EF V I+G +LP+ Sbjct: 175 CVVKPASLGSSVGVSIVRTIDEFFTALDSAFSLEHTVIVEKYIKGREFAVGIVGSRVLPA 234 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I I P FYDY+ KY T CPA +++ + K + LG + R D M+ Sbjct: 235 IEIIPKHGFYDYKNKYQPGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADFMV 294 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 D +G Y LEANT PGMT SL+P A + F L+ I++ Sbjct: 295 DENG-IYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIK 336 >UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobacterium hafniense RepID=B8FWD5_DESHD Length = 361 Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 122/343 (35%), Positives = 182/343 (53%), Gaps = 43/343 (12%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGL----------------------------REGGI 35 KI +L GG S E EVSLNS ++VL + ++ + Sbjct: 5 KIIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPAL 64 Query: 36 DAYPV----DPKE-----VDVTQLKSMG-FQKVFIALHGRGGEDGTLQGMLELMGLPYTG 85 + PV DP +D + L G F +F LHG GEDGT+QG+ E+ +PY G Sbjct: 65 EGIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAG 124 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI-SALGLPVIVK 144 SGV+ SAL MDK R K ++ AGLP AP++ + R +K + ++ L I +LG P VK Sbjct: 125 SGVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPM-EQLLDNIEHSLGYPCFVK 183 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG-EEILPSI-- 201 P+ GSSVG+SK L AL+LA ++D ++++E+ + G E +++LG E+ SI Sbjct: 184 PANLGSSVGISKARNREELIQALQLAAEYDRKLVVEQNIVGREIELSVLGNEDAQASIPG 243 Query: 202 RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD 261 I P+ FYDYEAKY+ +Q PA L +LQ + A+ + G R+D + Sbjct: 244 EILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVT 303 Query: 262 SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 GQ Y+ E NT PG T S+ P +G+ +++L+ R++EL Sbjct: 304 EGGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIEL 346 >UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriaceae RepID=C7NBV7_LEPBD Length = 308 Score = 186 bits (473), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 107/303 (35%), Positives = 174/303 (57%), Gaps = 9/303 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--DPKEVDVTQLKSMGFQKVFIA 61 ++ V+ GG S EREVSL +G+ ++A L + + + D ++ ++K + V+IA Sbjct: 5 RVGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEKEVFEKVKELNLDFVYIA 64 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG +Q +L+ +G+ Y+G GVM+SA+ MDK SK + G G+ +A W ++ E Sbjct: 65 LHGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGE 124 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + K+ LG V+VKP+ GSS+G+S V + L+ L L F D+E LIE+ Sbjct: 125 TVDFETIKK-----ELGNRVVVKPNSGGSSIGVSFVENQEELEKGLELVFGMDKEALIEE 179 Query: 182 WLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 L G E +V ++ ++ P+IRI+ +G ++DYE+KY + E Q A + Sbjct: 180 VLHGVEISVPVIDGKVFPTIRIEALAGDYFDYESKYAKGGANEYVFEFPEEVQ-AEINKF 238 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 ++ L C+G+ RID M+ ++ Y +E NTSPGMTS SL+P + G ++Q + Sbjct: 239 AKDSYYGLKCEGFARIDFMVVNEETPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTLDL 298 Query: 301 ILE 303 ++E Sbjct: 299 LIE 301 >UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacterales RepID=DDL_DESPS Length = 322 Score = 186 bits (472), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 171/311 (54%), Gaps = 18/311 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE--VDVTQL--KSMGFQKVF 59 +IA++ GGTS EREVSL V L + + Y V + D+ +L + F Sbjct: 10 RIALIAGGTSGEREVSLTGADGVERILDK---EKYLVSRYDSATDLPRLAADAASIDFAF 66 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 I LHG GEDGT+QG L+L+G+PY GSGV+ SAL+MDK +K + A LPVA W + Sbjct: 67 ILLHGLHGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAA 126 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE-EVL 178 +F ++L I LGLP++VKP+ GSS+G+S E L + A ++ Sbjct: 127 GDF---FYSEEL--IEDLGLPLVVKPACAGSSIGISLAHTEEELLAGINHARDCSAGAIM 181 Query: 179 IEKWLSGPEFTVAILGEE---ILPSIRIQPSG--TFYDYEAKYLSDETQYFCPAGLEASQ 233 +E+++ G E T A+LG + LP + I P F+DYEAKY ++ CPA + + Sbjct: 182 VEQFIKGRELTCAVLGNDDLQALPVLEIVPGDKYAFFDYEAKYQPGASEEICPALIADAL 241 Query: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 +Q ++A L +G+ R D + DG+ YLLE NT PGMT S++P A GM Sbjct: 242 REQVQDHAIRAHQALRLRGYSRTDFIYGEDGKLYLLETNTIPGMTETSILPQEAAATGMD 301 Query: 294 FSQLVVRILEL 304 F L+ ++EL Sbjct: 302 FPSLLDTLIEL 312 >UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B4D1Z2_9BACT Length = 315 Score = 186 bits (472), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 173/308 (56%), Gaps = 20/308 (6%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 KIAVL+GG +ER+VSL SGA V LR G D VD D + G F +H Sbjct: 16 KIAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDF--IVPAGTDVAFNVIH 73 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG +Q +LE G+ YTG GV S L++DK+ +K +Q +P A + L Sbjct: 74 GTFGEDGQIQRILESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEIL-----R 128 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 G + L LP +VK +EGSSVG+ V E + D +R A+ + +E+L+E ++ Sbjct: 129 DGAN-------PTLPLPYVVKAPKEGSSVGVFIVREEAKVADTMREAWSYGKELLVEDFI 181 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY------LSDETQYFCPAGLEASQEANL 237 +G E TV +LG++ LP I I+P+ FY+++ KY ++ CPA + + Sbjct: 182 NGRELTVGVLGDQALPIIEIKPAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRV 241 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Q + L A + + + R+DV+L G+ Y+LE NT PGMT SL+P AA AG+S+++L Sbjct: 242 QEVALAAARAIHLETYCRVDVLLTGAGEPYVLEINTIPGMTQVSLLPEAAAAAGISYAEL 301 Query: 298 VVRILELA 305 R++EL+ Sbjct: 302 CARVIELS 309 >UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HX62_9BACT Length = 323 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 164/305 (53%), Gaps = 11/305 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL GG S E E+S SG AV LR+ G + + L F+A H Sbjct: 13 RVAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSPDVAFLATH 72 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVA-PWVALTRAEF 122 G GGE+GTLQG LE M +PYTGSGV+ASA+ M K+RS+ L++ GL V + T F Sbjct: 73 GGGGENGTLQGFLETMKIPYTGSGVLASAIGMSKMRSRALFRERGLAVPLTYAHRTEESF 132 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 G + P +VKP GSS+G+ +V+ L DA+ A ++ VL+E+ Sbjct: 133 NPGYI--------SFDPPYMVKPEAAGSSIGVKRVLRREDLADAVSEAGRYSHWVLVEQL 184 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGT--FYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 + G E AIL L +I I P FY Y +KY+ +++ PA L + + L + Sbjct: 185 IPGREIQSAILSGRYLGAIEIIPDKAEPFYTYASKYVPGGSRHISPAPLTPDESSELSRI 244 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 ++A L +G R+D +L+ +G F +LE NT PG+T SL+P A G+SF+ L++ Sbjct: 245 TIEACRVLDVRGACRLDTILNDEGVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIE 304 Query: 301 ILELA 305 ++ A Sbjct: 305 LIATA 309 >UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4Z4D3_EUBE2 Length = 382 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/348 (32%), Positives = 172/348 (49%), Gaps = 57/348 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-EVDVTQLKSMGFQK----- 57 +I VL GGTS ER+VSL +G V LR G +A +D VD +++K+ +K Sbjct: 41 RIVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDLGE 100 Query: 58 ----------------------------------------VFIALHGRGGEDGTLQGMLE 77 VF+ LHG GEDG +Q + Sbjct: 101 LSDNLKKKTADIPAEVKRRTEARESFFGRNVLELCKEADMVFMGLHGSNGEDGKVQATFD 160 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 L+G+ YTG+ ++SA+SM K +K + G+P+ V L + +I + Sbjct: 161 LLGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGVTLHKGH-----------KIEYV 209 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI 197 P +VKP GSSVG+S E +DAL AF +++ VL+E+++ G EF+VA+L + Sbjct: 210 PFPCVVKPCCGGSSVGVSIAHNEKEFEDALDEAFSYEDTVLVEEFVDGREFSVAVLDGKA 269 Query: 198 LPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 LP I I+P FYDY+ KY + T+ CPA + + +Q K G + R+D Sbjct: 270 LPVIEIEPLEGFYDYKNKYKAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTYARVD 329 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +LD + + LE NT PGMT SL+P A G+S+ +L +I+E++ Sbjct: 330 ELLDKNNNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIEIS 377 >UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFD6_KOSOT Length = 305 Score = 184 bits (466), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 111/310 (35%), Positives = 176/310 (56%), Gaps = 23/310 (7%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGG--IDAYPVDPKEVDVTQL-KSMGFQKVFI 60 +I VL GG S ER +SL SG+ V+ L + G +DA+ D + ++T+L K VFI Sbjct: 7 RITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAF--DLRADNITELAKLRDTDLVFI 64 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK-LRSKLLWQGAGLPVAPWVALTR 119 ALHG+ GEDG +Q +LEL G+ Y GS + SA+ +K L KLL +P W +T Sbjct: 65 ALHGKFGEDGKIQSLLELFGIEYIGSDSLVSAICFNKNLTYKLLSNTITMP--RWKTITS 122 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 E +G P ++KP+ EGSS+G+ LQ+ + + +++ Sbjct: 123 EEELEGWKH----------FPAVIKPANEGSSIGVYICDTFEELQNKTTKVLKEYKTLIL 172 Query: 180 EKWLSGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+++ G E T++I+ + +LP + ++P FYDYEAKY + T++ PA ++ + Sbjct: 173 EEYIKGRELTISIIEKGGQPVVLPILELKPKRRFYDYEAKYTAGLTEFIVPAPIDDKLKE 232 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 ++ L + +T LGC+ + RID +L + QFY LE NT PG+T S +P++AR AGM F Sbjct: 233 EIKKLSKRIFTALGCRHFARIDGIL-KENQFYFLEVNTIPGLTDLSDLPVSARAAGMGFE 291 Query: 296 QLVVRILELA 305 +L+ I++ A Sbjct: 292 ELIDLIVKEA 301 >UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomonadales RepID=DDL_ERYLH Length = 323 Score = 184 bits (466), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 165/309 (53%), Gaps = 16/309 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 + VL+GG + EREVSL SG V L + G +D ++ VF ALH Sbjct: 8 HVVVLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAPDVVFNALH 67 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDGT+QGML+LMG+PYT SG+ S +++DK +K G+P+ P + ++E Sbjct: 68 GVPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKELTKQQLVPRGIPM-PGGRIVQSE-- 124 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL----AFQHDEEVLI 179 L + L P ++KP EGSSVG++ V E+ + +R +Q E+L Sbjct: 125 ------DLYQQDPLARPYVLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFRELLA 178 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 E ++ G E T A++G + L ++P FYD++AKY T++ CPA + EA + Sbjct: 179 EPFIRGRELTTAVVGGQALAVTELKPKSGFYDFDAKYTDGMTEHVCPADIPPEIEALCKK 238 Query: 240 LVLKAWTTLGCKGWGRIDVMLDS---DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 L+A LGC+G R D D D ++LE NT PGMT SLVP A AGMS+ Sbjct: 239 YALEAHRILGCRGTSRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSYED 298 Query: 297 LVVRILELA 305 LV I+E A Sbjct: 299 LVEAIVEAA 307 >UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae RepID=B7A6N0_THEAQ Length = 321 Score = 184 bits (466), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 105/252 (41%), Positives = 143/252 (56%), Gaps = 15/252 (5%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 VF LHG GEDGT+QG LE++G PY G+GV SAL MDK SK + AG+PV PWVAL Sbjct: 79 VFPLLHGPMGEDGTIQGFLEMLGKPYVGAGVAGSALCMDKDFSKRVLAQAGIPVVPWVAL 138 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 R E + P VKP+ GSS+G+S+V L++AL AF+HD + Sbjct: 139 YRGE----------TPLVPFEPPFFVKPANTGSSIGISRVERYADLEEALEEAFRHDRKA 188 Query: 178 LIEKWLSG-PEFTVAILGE---EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQ 233 ++EK LSG E V +LG E P ++ FYDYE KY + PA L+ Sbjct: 189 VVEKALSGVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGT 248 Query: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 E +Q + LKA+ LG +G R+D L ++G+ YL E NT PG T S+ P G++ Sbjct: 249 EETVQEMALKAYKVLGLRGMARVDFFL-AEGELYLNEVNTIPGFTPTSMFPRLFLAKGLT 307 Query: 294 FSQLVVRILELA 305 + +L+ R++ELA Sbjct: 308 YPELLRRLVELA 319 >UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira RepID=DDL_LEPBJ Length = 351 Score = 183 bits (465), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 112/344 (32%), Positives = 179/344 (52%), Gaps = 45/344 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-----------------DPKE-V 45 KIAV GG+S E +S+ +G + L G P+ P E V Sbjct: 3 KIAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVPLQYRISIPYEAV 62 Query: 46 DVTQLKSMGFQK-----------------VFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 + + L FQK VF+ LHG GEDG++QG L ++G+PYTGSGV Sbjct: 63 NSSDLFEEEFQKTNGVSKMDFISNLDADIVFLGLHGGKGEDGSIQGFLRVLGVPYTGSGV 122 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSRE 148 ASAL+MDK R+ ++ +G VAP+ + + + ++ + ++ +LG P +KP Sbjct: 123 AASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNS-PEETVIKLMSLGFPQFLKPVEG 181 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG-------EEI-LPS 200 GSSV K+ + L L L F+ D +V+ + +L+G E + +L E I LP+ Sbjct: 182 GSSVSTYKITNQEQLSRQLALIFESDSKVMSQSFLAGTEVSCGVLERYRNGKLERIALPA 241 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I P G F+D+E+KY ++ PA + + +Q L + A T+LGC+G+ R D ++ Sbjct: 242 TEIVPGGEFFDFESKYKQGGSREITPARISKQEMTRVQELAIDAHTSLGCRGYSRSDFII 301 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 G+ ++LE NT PGMT SL+P A+ AG++ ++ ++E+ Sbjct: 302 -VGGEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIEI 344 >UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriaceae RepID=D1AUY0_STRM9 Length = 299 Score = 183 bits (465), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 171/299 (57%), Gaps = 18/299 (6%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD-PKEVDVTQLKSMGFQKVFIAL 62 +I V+ GG S EREVS+N+G ++A L + + ++ K+ D+ ++ + +IAL Sbjct: 2 RIGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKKEDIFKVVDLNLDFAYIAL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GE G +Q +LE G+ Y+GSG+++SA+ MDK +K+L + +G+ + + + E Sbjct: 62 HGEFGESGDVQAILETAGIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGEN 121 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE-EVLIEK 181 K SD L E +I+KP+R GSS+G+ + L+ L F+ E EVLIE+ Sbjct: 122 IK-FSDLNLGE------KIILKPNRGGSSIGVYFATNDEELEYGLNEIFKLGENEVLIEE 174 Query: 182 WLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLS---DETQYFCPAGLEASQEANL 237 SG E +V I+ ++ P++ I+P TF+DY +KY + E YF E S + + Sbjct: 175 MKSGIEISVPIIAGKVFPTLLIEPLKDTFFDYTSKYENGGAKEYVYF----FEESLQNEI 230 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 +KA+ + CKG+ RID +L D + Y LE NT PGMT +SL+P + G S+S+ Sbjct: 231 NDFTIKAYNAVKCKGFARIDYIL-VDNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSE 288 >UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH51_9BACT Length = 1029 Score = 182 bits (463), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 170/304 (55%), Gaps = 22/304 (7%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQK----VF 59 KIAVL GG S+ER +SL S AV LR+GG + E+D+T K VF Sbjct: 731 KIAVLKGGPSSERPISLQSAEAVAKALRDGGHEV-----TEIDITDFSLPAISKDIDLVF 785 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 LHG GEDG +Q ++E G PY G + +S L +DK + + +GLPV V L Sbjct: 786 PVLHGEFGEDGQVQKLIEGQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRS 845 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 D+++++ + LP +VKP+R+GSS+ +S V E L+ A+ LAF++D+ VL+ Sbjct: 846 -------KDEEISQ--NITLPCVVKPNRQGSSISLSLVEKEGDLRKAIDLAFENDDTVLV 896 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSD--ETQYFCPAG-LEASQEAN 236 E + G E TV ++ + L + I P F+DY+AKY +TQY CP + Sbjct: 897 ESFFKGIECTVGLIDGKALSVVEIIPPEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSER 956 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDG-QFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 L+ +++ L + R+D++ + D +F +LEANT PG TS SL+P AA++ G+SF+ Sbjct: 957 LKKCGEESFKVLKGRHLMRVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFT 1016 Query: 296 QLVV 299 +L Sbjct: 1017 ELCC 1020 >UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W8_9ZZZZ Length = 301 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/309 (37%), Positives = 168/309 (54%), Gaps = 17/309 (5%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE--VDVTQLKSMGFQKV 58 M K+ VL+GG SAEREVSL +G V A L++ G + D + V LK V Sbjct: 1 MAKKVLVLMGGFSAEREVSLTTGKCVCAALKKAGYEVVSHDLQNGFELVETLKKEKPDVV 60 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F ALHG GEDG +QG L+++ +PYT SG+ AS L MDK +K L G+ V +T Sbjct: 61 FNALHGNWGEDGEIQGFLDVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQGEKMT 120 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 +F+ AE + L +P +VKP +GSSVG+ + + +DA + ++ D E+L Sbjct: 121 FRKFK--------AEGTFLKMPYVVKPVSDGSSVGVYIIRKK---EDAEAVRYEDDREIL 169 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGL--EASQEAN 236 IE+++ G E T +LG + ++ S FYDY AKY + TQ+ PA + EA+ Sbjct: 170 IEEFIDGKELTCMVLGSQAHVVTELRASDEFYDYHAKYTAGATQHILPAEIPEEAANRCK 229 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 L A + LGC+ R D + + LLE NT+PGMT SLVP A+ G+ + + Sbjct: 230 LYAEHM--HNILGCRSVSRCDFRYNPEDGVVLLEINTAPGMTDLSLVPEQAKYIGIGYER 287 Query: 297 LVVRILELA 305 L ++E A Sbjct: 288 LCSYLVENA 296 >UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia RepID=DDL_CALS8 Length = 364 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 177/347 (51%), Gaps = 48/347 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 K+AVL GG S E EVS+ S +V+ L + + P+ Sbjct: 5 KVAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWT 64 Query: 41 ----------DPKEVDVTQLKS-----MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTG 85 D + + ++K + VF LHG GEDGT+QG+LEL G+PY G Sbjct: 65 MYSIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVG 124 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQ--LAEI-SALGLPVI 142 GV++SAL MDK +K L G+P ++ + + E+ LS K+ + I S PV Sbjct: 125 CGVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEY---LSKKEYFIRRIESEFSYPVF 181 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE-EILPSI 201 VKP+ GSSVG+SK ++ L A+ AF +D ++LIE+ ++ E A+LG EIL S Sbjct: 182 VKPANSGSSVGISKAKDKDELILAIHEAFLYDTKILIEQAINAREIECAVLGNSEILVSA 241 Query: 202 --RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 I PS FY YEAKY+ ++ PA LE E ++ L +K + C G RID Sbjct: 242 LGEIVPSREFYSYEAKYIDGSSELIIPAKLEKQVEDEIKELAVKIYKLFECSGMARIDFF 301 Query: 260 LDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +D + + Y E NT PG TS S+ P +G+ + QL+ ++++LA Sbjct: 302 VDKETNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLA 348 >UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGF5_CLOCL Length = 341 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 173/341 (50%), Gaps = 35/341 (10%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------------- 40 M IAV+ GG S+E ++SL S A VL + + YP+ Sbjct: 1 MNKNIAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKEGLWYEYTGSIDKIED 60 Query: 41 ----DPKEVDVTQLKSMGFQK----VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 + + + + + F K VF LHG GEDGT+QG+ +L+ LP G+ V++SA Sbjct: 61 GSWINDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLCKLLRLPCVGASVLSSA 120 Query: 93 LSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSV 152 L MDK SK + + + V P+ + E+ S + I LG V VKPS GSSV Sbjct: 121 LCMDKAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKKLGEEVFVKPSNGGSSV 180 Query: 153 GMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRI------QPS 206 G+SK+ AE++ + A+ AF++D+ VL+EK ++ E VAI+ + I +I + Sbjct: 181 GVSKLKAEDSFEVAIEKAFKYDKRVLVEKAIAAREIKVAIIEDGIELKTKIGEVVYKNSN 240 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQ 265 FYDYE KY + PA LE ++AL LKA+ L C+G R+D +D + Sbjct: 241 KEFYDYEVKYTEGMNELIVPAKLETEVMDKIEALALKAYKVLDCRGMARVDFFIDRYTSE 300 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 YL E NT PG T S P AG++ ++L+ +++ A+ Sbjct: 301 IYLNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNAE 341 >UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMF6_9DELT Length = 300 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 114/305 (37%), Positives = 166/305 (54%), Gaps = 16/305 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD--PKEVDVTQLKSMGFQKVFIA 61 ++ ++ GG S ER+VSLN A + L+ G + +D P ++ K+ I Sbjct: 2 RVLLIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVN-KAREADAAIIN 60 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG++QG+LE +GLPY GSGV S L+++K SK + GL P L Sbjct: 61 LHGAPGEDGSIQGVLEDVGLPYQGSGVRGSFLALNKALSKQFYANHGL-RTPKGGLY--- 116 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 F +G + + PVI KP++ GSS+ M + + L + E+L+E+ Sbjct: 117 FPQG-------RLHHVPPPVICKPNQGGSSLDMQIFYNQEEMYSFLN-QVDSEHEILVEE 168 Query: 182 WLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 ++G E + A+L E LP I IQP G F+DY +KY D CPA + ++Q + Sbjct: 169 LINGHEVSCAVLDNEPLPPILIQPVKGDFFDYNSKYDPDGAVEICPAPISQEASRSIQEM 228 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L+A LG + + R D MLD Y+LE NT PGMT SLVP AA+QAG+ F++L+ R Sbjct: 229 SLQAHRILGLRHYSRSDFMLDQQDNIYILETNTLPGMTRTSLVPKAAQQAGIGFTELIAR 288 Query: 301 ILELA 305 +L LA Sbjct: 289 LLSLA 293 >UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci RepID=DDL_DEIGD Length = 339 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 170/336 (50%), Gaps = 32/336 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV---------DPKEV------ 45 M +I +L GG S E EVSL S +VLA L D PV P + Sbjct: 1 MKKRILLLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALET 60 Query: 46 -------DVTQLKSM---GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSM 95 D+ ++ G+ VF LHG GEDGT+QG+L L G+P+ GSGV+ SA+SM Sbjct: 61 GEAVRGGDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSM 120 Query: 96 DKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 155 DK+ +K + G+P W R E+++ + + A LG P+ VKP+ GSSVG+S Sbjct: 121 DKVMTKQVLASVGMPQVAWRLAVRREWQERPQEVR-ARAGELGYPLFVKPANLGSSVGIS 179 Query: 156 KVVAENALQDALRLAFQHDEEVLIEKWLSGP--EFTVAILGEEIL---PSIRIQPSGTFY 210 KV L+ AL LAF V++E + E V ILG + P ++ FY Sbjct: 180 KVSGPGELERALDLAFSLGRRVILEAMTAHKPRELEVGILGNDAPIASPVGELRFEADFY 239 Query: 211 DYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM-LDSDGQFYLL 269 DYE KY PA L ++ L L A+ TL C G R+D ++ G+ +L Sbjct: 240 DYETKYTEGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFLN 299 Query: 270 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 E NT PG T+ S+ P AG+S+S+LV R++ELA Sbjct: 300 EVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELA 335 >UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia RepID=DDL_NATTJ Length = 365 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 114/345 (33%), Positives = 182/345 (52%), Gaps = 44/345 (12%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD------------PKEVDVTQLK 51 ++ VL GG S E EVSL S ++L L + P+ P E T +K Sbjct: 5 RVGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELETGIK 64 Query: 52 SMG--------------------FQKV------FIALHGRGGEDGTLQGMLELMGLPYTG 85 + G F+K+ F LHG GEDGT+QG L+L G+PY G Sbjct: 65 NQGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFLDLCGIPYVG 124 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKP 145 SGV+ S+L+MDK+ K + + GL VA + + R+E+E+ + + L P+ VKP Sbjct: 125 SGVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQLSYPIFVKP 184 Query: 146 SREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSI 201 + GSSVG+SKV L + LA ++D + L E+++ G E ++ILG + +P Sbjct: 185 ANLGSSVGISKVKNREELIQGIDLAVKYDMKCLAEEFIPGKEIELSILGNDNPKTSVPG- 243 Query: 202 RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID-VML 260 I P+ FYDY AKY++++++ PA L + + ++ + ++A+ L C G R+D +L Sbjct: 244 EIIPANEFYDYNAKYINNKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYGLSRVDYFVL 303 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + + Y+ E NT PG T S+ P ++G+S+SQL+ ++ LA Sbjct: 304 EDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLLTDLIYLA 348 >UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia RepID=DDL_THEP3 Length = 359 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 120/346 (34%), Positives = 180/346 (52%), Gaps = 46/346 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------DVTQLKSMGF 55 KIAVL GG S E EVSL S +++ L + + Y V + DV ++++ + Sbjct: 5 KIAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIETGEW 64 Query: 56 QK-------------------------------VFIALHGRGGEDGTLQGMLELMGLPYT 84 +K VF LHG GEDGT+QG+LEL+ +PY Sbjct: 65 EKEGIPAIMGASTKYRGIITFEDGENGFYPIDVVFPVLHGPNGEDGTIQGLLELLDMPYV 124 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 G+ V++SAL MDK+ +K +++ AGLP +V + E E + K+ +I LG P VK Sbjct: 125 GANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIKK--KIEHLGYPCFVK 182 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI--- 201 P+ GSSVG++KV E L AL+LA ++D ++LIE+ + E ++LG E + Sbjct: 183 PANLGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENPEASIAG 242 Query: 202 RIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I PS FYDY AKY ++ PA L + ++ L +KA+ L +G R+D ++ Sbjct: 243 EIVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMARVDFLM 302 Query: 261 DSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D + G YL E NT PG T S+ P +G S+S L+ ++ LA Sbjct: 303 DRNTGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLLDELINLA 348 >UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=DDL_SOLUE Length = 325 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 113/318 (35%), Positives = 168/318 (52%), Gaps = 20/318 (6%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA--YPVD------PKEVDVTQLKS 52 M ++AV+ GG + E EVS+ S ++LAGL + Y +D P + Sbjct: 1 MKLRVAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKWSPGPILPEPGAH 60 Query: 53 MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVA 112 VF LHG GEDGT+QG+LEL LPY G+GV+ SA+SMDK K + + LP+ Sbjct: 61 ANIDVVFPVLHGTFGEDGTVQGLLELADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIV 120 Query: 113 PWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ 172 +V +TR + + L P+ VKP+ GSSVG+SK E L+ A LA Q Sbjct: 121 DYVTVTRQ------TPSIVDACRRLPFPMFVKPANLGSSVGISKAHDEQELEAAFSLAKQ 174 Query: 173 HDEEVLIEKWLSGPEFTVAILGEEI----LPSIRIQPSGTFYDYEAKYLSDETQYFCPAG 228 +D ++++E+ + G E ++LG E LP I PS FYDYE KYL D + PA Sbjct: 175 YDRKIIVERGIEGRELECSVLGNEAPMASLPC-EILPSREFYDYEDKYLLDMARTQVPAD 233 Query: 229 LEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAA 287 L + ++ L ++ + + C+G R+D L+ + Y+ E NT PG TS S+ P Sbjct: 234 LPGERTDEIRRLAVECYRAVECEGMARVDFFLEHGTNRLYINEINTIPGFTSISMYPKMW 293 Query: 288 RQAGMSFSQLVVRILELA 305 +G+ F L+ +++E A Sbjct: 294 EHSGIPFCTLLDQLIEFA 311 >UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira RepID=C0QV33_BRAHW Length = 328 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 108/313 (34%), Positives = 168/313 (53%), Gaps = 17/313 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAV---LAGLREGGIDAYPVDPKEVD--VTQLKSMGFQKV 58 KIAVL GG S+EREVSL SG V L E + +D K+ V +LK + Sbjct: 19 KIAVLHGGLSSEREVSLRSGQNVYKALTSFDEIKDNCILIDVKDSYELVKKLKENNIEYC 78 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 + LHG GEDGT+QG+LE + + YTG ++ SA+ M+K+ +K +W+ + + A ++ L Sbjct: 79 YNILHGTSGEDGTVQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFMLLK 138 Query: 119 RAEFEKGLSDKQLAEISAL--GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 K ++D + SAL P+I+KP +GSSVG+ + + + + + + E Sbjct: 139 DV---KEINDSGIKG-SALTFNFPLILKPISDGSSVGVHLIKTKTEFESVVS-SIKDSEN 193 Query: 177 VLIEKWLSGPEFTVAILGEE-----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEA 231 +E ++ G E TV ++ ++ + P + I YDYEAKY +T+ PA L Sbjct: 194 YFLEPYIKGKEITVGLVKQDDENIYVFPILGINSKNEIYDYEAKYTPGKTEMEMPAKLSK 253 Query: 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 E + KA+ LGC G RID ++ +D + YL+E NT GMT+ S +P A+ Sbjct: 254 EIENKVIETCKKAYKVLGCSGLSRIDAIVGNDNEVYLMEVNTQGGMTNTSDIPAMAKHIN 313 Query: 292 MSFSQLVVRILEL 304 + F+ LV+ IL L Sbjct: 314 LDFNDLVLYILGL 326 >UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LDC1_GORB4 Length = 358 Score = 179 bits (455), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 119/344 (34%), Positives = 173/344 (50%), Gaps = 48/344 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD---------------------- 41 ++ VL GG SAE +VS + A VLA G + P+ Sbjct: 7 RLVVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIAALTDGTP 66 Query: 42 -PKEVDV--------TQLKSMGFQK---VFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 P +DV T+L + V LHG GEDGT+QGMLEL LPY G+GV+ Sbjct: 67 LPDALDVAGTVVDPLTELAAHAADTPTVVLPLLHGPHGEDGTIQGMLELFKLPYVGAGVL 126 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLA---EISALGLPVIVKPS 146 +SAL MDK +K++ AG+P W+ EF G+ D + LGLP+ VKP+ Sbjct: 127 SSALCMDKAMAKVVAAQAGIPQCRWL-----EFRDGVDDPNTIVADAVGQLGLPIFVKPA 181 Query: 147 REGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG----EEILPSIR 202 GSSVG++K E L A+ +A ++D V++E+ ++G E VA+LG E +P Sbjct: 182 NLGSSVGITKAHDEAELDTAINVALRYDNVVILEEAVTGREVEVAVLGDTAPETSVPG-E 240 Query: 203 IQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 I+P FYDYE KY++ + PA L A ++ L K +T + C G R+D + Sbjct: 241 IEPGSEFYDYEDKYITGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVDFFYEE 300 Query: 263 DGQFYLL-EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G+ +LL E NT PG T S+ P G+S+ L+ +++ A Sbjct: 301 SGRGWLLNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLVTFA 344 >UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) n=1 Tax=Rickettsiella grylli RepID=A8PM76_9COXI Length = 365 Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 178/344 (51%), Gaps = 44/344 (12%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--DPK-EVDVTQLKSM------- 53 K+AVL GG SAE E+SL S AAV+ L + P+ D + V QL+S+ Sbjct: 10 KVAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDTIL 69 Query: 54 ---------------------GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 + VF LHG GEDGT+QG+L+LM + Y G+ V+ SA Sbjct: 70 LETENAQSFSGLAELMVDKKGHYDVVFPVLHGALGEDGTIQGLLDLMDIAYIGADVLGSA 129 Query: 93 LSMDKLRSKLLWQGAGLPVAPWVALTRAEF--EKGLSDKQLAEISALGLPVIVKPSREGS 150 + MDK+ SK L A +PV P++A + K L +Q+ + +G P+ +KP GS Sbjct: 130 VGMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQ--EIGYPLFIKPVNGGS 187 Query: 151 SVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL------GEEILPSI-RI 203 S+G++K+ + L++A+ L F + +VL+EK L E +A+L E + I I Sbjct: 188 SLGITKIKKDTDLENAIELVFTYSTKVLVEKALEVREVEIAVLENQKWGAEPYVSQIGEI 247 Query: 204 QPSGTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 P FY YEAKYL ++ Q PA L+ SQ ++ L ++ + L C G RID ++ Sbjct: 248 IPRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDCSGMARIDFFIEK 307 Query: 263 DGQ-FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 Q Y E NT PG T S+ P +G++++ L+ ++ELA Sbjct: 308 RSQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELA 351 >UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirillum sp. Group II RepID=A3ERR6_9BACT Length = 303 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 160/299 (53%), Gaps = 9/299 (3%) Query: 9 LGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGE 68 +GG S E VS SG AVL LR G +A PV+ L F+A HG GE Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60 Query: 69 DGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD 128 +G LQG LE++G+PYTGSGV+ SAL M K S+ L++ GL V VA+ E Sbjct: 61 NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIESGE------- 113 Query: 129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEF 188 + + LP +VKP GSS+G+++V L AL A +H +L+E +L G E Sbjct: 114 RLTPDKIPFPLPFMVKPESAGSSIGVTRVDHFPDLPQALLEAEKHSSRILVEPFLPGREV 173 Query: 189 TVAILGEEILPSIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWT 246 AIL L +I I P S FY Y +KY ++++ PA L + + L+ L+A+ Sbjct: 174 QSAILDGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVASRLEEATLRAFG 233 Query: 247 TLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L +G R+D ++ DG+ +LE NT PG+T SLVP AR G+SF LV IL A Sbjct: 234 LLELRGVARMDTLVLPDGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292 >UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria RepID=DDL_CHLT3 Length = 366 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 112/350 (32%), Positives = 178/350 (50%), Gaps = 48/350 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 K+A+L GG S+E E+S+ S ++ L + P+ Sbjct: 5 KVALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILAMDFE 64 Query: 41 ------DPKEVDVTQ---------------LKSMGFQKVFIALHGRGGEDGTLQGMLELM 79 KE+ + + ++ F LHG GEDGT+QG+LE+ Sbjct: 65 SAIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGLLEMF 124 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 + Y GSGV+ASA++MDK +K+ ++ AGL V ++A R EFE+ L Sbjct: 125 DVAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEKKLRY 184 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG--EEI 197 P+ VKP+ GSSVG+SK N L +A+ LA +D + LIEK ++ E VA+LG E I Sbjct: 185 PMFVKPANMGSSVGISKAHNRNELIEAIELALAYDRKFLIEKAINAREMEVAVLGNDEPI 244 Query: 198 LPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 ++ + P FYDY+AKY+ ++ PA + + L+A L A+ C+G R+ Sbjct: 245 ASAVGEVVPCNEFYDYDAKYVKGSSEVIIPAQISEAFAGKLKAAALNAFVAADCEGMARV 304 Query: 257 DVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D +++ + + Y+ E N+ PG TS S+ P Q G+S+++L+ R++ELA Sbjct: 305 DFLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIELA 354 >UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria RepID=DDL_BAUCH Length = 375 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 116/350 (33%), Positives = 178/350 (50%), Gaps = 52/350 (14%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREG-------GIDA---YPVDPK---------- 43 ++ ++ GG SAE EVSL S ++ + E GID + ++ K Sbjct: 5 RVGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIYGENE 64 Query: 44 ------------------------EVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELM 79 ++D+ + + + +F +HG GEDG LQG+L + Sbjct: 65 TYIALNKSNKHIAIIPGRKHDQFIQIDMLE-QLVQLDVIFPIVHGTLGEDGNLQGLLRMA 123 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 LP+ GS V+ SA+SMDK +K L + A L V P + LTR E S Q+ I+ LG Sbjct: 124 NLPFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRE-NFSYDQI--ITYLGS 180 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILP 199 + VKP+ +GSSVG+SKV+ + AL LAF D++VL+E ++G E A+LG Sbjct: 181 SLFVKPANQGSSVGVSKVINRISFDQALALAFCFDDKVLVESAINGRELECAVLGNHDPQ 240 Query: 200 SI---RIQPSGTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 + I S FY YE KYL++ PA + N+Q + ++A+ L C G R Sbjct: 241 ASLCGEIVLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMAR 300 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +DV L ++ + + E NTSPG TS S+ P + +G+S+ L+ R++ELA Sbjct: 301 VDVFLTTNNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIELA 350 >UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FAD8 Length = 371 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/256 (38%), Positives = 144/256 (56%), Gaps = 10/256 (3%) Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F LHG+ GEDGTLQG+ EL + GSGV ASA SMDK +K L AG+P PW +T Sbjct: 109 FPLLHGQYGEDGTLQGLFELSDTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVT 168 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 +E ++ Q I+ LGLPV VKP+R GSS+G+S+V + L ALR AF+HD +V+ Sbjct: 169 ETMWEADQAEAQ-DRITGLGLPVFVKPARAGSSMGVSRVESAEGLDQALRSAFEHDSKVI 227 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSG--------TFYDYEAKYLS-DETQYFCPAGL 229 +E + G E A+LG +R+ G +FYD+EAKYL+ + Q CPA + Sbjct: 228 VEPQVVGREIECAVLGSVHDREVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCPARV 287 Query: 230 EASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQ 289 + + A +Q L + + C G R+D + G+ + E NT PG T S P + Sbjct: 288 DETTTARIQELSAQVFRLFDCTGLSRVDTFVTDAGEVLINEINTLPGFTPTSAYPFMWSK 347 Query: 290 AGMSFSQLVVRILELA 305 +G+ + L+ ++ +A Sbjct: 348 SGIEYPALISELITIA 363 >UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B634_THEAS Length = 316 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 117/309 (37%), Positives = 165/309 (53%), Gaps = 16/309 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGG--IDAYPVDPKEVDVTQLKSMGFQKVFIA 61 K+ V GG S EREVSL SG AV L G ++ D V + S F VF+A Sbjct: 2 KVLVAYGGDSPEREVSLRSGEAVKEALSSLGWTVEGLDADSPLRVVERALSGAFDLVFVA 61 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK--LRSKLLWQGAGLPVAPWVALTR 119 LHG GEDGTLQ +L+ +PYTG A MDK R LL +G +P Sbjct: 62 LHGGWGEDGTLQCLLDTHRIPYTGPRWGACMACMDKEITRGVLLARGVRVPEG------- 114 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 F+ + L E+ ++VKP R GS+VG+ V + L AL AF++D +++ Sbjct: 115 IPFDGSMDQGVLLELLRRWGRLVVKPCRCGSTVGIGIVDHPSRLDRALDEAFRYDRRLVV 174 Query: 180 EKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+++ G E TVA+ G + LP++ I+P FYDY +KY T+Y CPA L + Sbjct: 175 ERFIEGRELTVAVFDTPEGPKALPTVEIRPRSGFYDYSSKYTKGMTEYLCPAPLSEQEAE 234 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 + ++A+ +GC + R+DV L+ G+ +LE NT+PGMTS SLVP AA G F Sbjct: 235 AVARAAVEAYRAMGCSVYSRVDVRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDF 294 Query: 295 SQLVVRILE 303 +++ RI E Sbjct: 295 PEMLRRICE 303 >UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pallidum RepID=DDL_TREPS Length = 396 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 143/249 (57%), Gaps = 4/249 (1%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 VF LHG GEDGT+QG+LE++ +PY G GV ASAL+MDK+++K+LWQ AGLPV P+V Sbjct: 98 VFPVLHGSYGEDGTVQGLLEMLQVPYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFF 157 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 + + + + + LG P+ VKP++ GSSVG S V L A+ AFQ DE V Sbjct: 158 RKDAWRMHMQEFVAQLETRLGYPLFVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVV 217 Query: 178 LIEKWLSGPEFTVAILGE---EILPSIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQ 233 L+E+++ E A+ G + + + G FYDYE KY + + A LE +Q Sbjct: 218 LVERYVRAREIECALSGNGPYTVHGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQ 277 Query: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 + L L+A+ LG G R+D L G+ Y+ E NT PG TS SL P + AG++ Sbjct: 278 YEQITTLALRAYEALGLTGLARVDFFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVA 337 Query: 294 FSQLVVRIL 302 L+ ++L Sbjct: 338 PQDLMAQLL 346 >UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0Y9_9ZZZZ Length = 356 Score = 176 bits (446), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 114/350 (32%), Positives = 175/350 (50%), Gaps = 49/350 (14%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------------DPKEVDV-- 47 K+AVL GG S+E ++S S A++L L + + YPV DP V+ Sbjct: 2 KLAVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYCPDCDPDRVESGA 61 Query: 48 --------------------------TQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 +++ + VF LHG GGEDGT+QG+LEL G+ Sbjct: 62 WERMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLELAGI 121 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG-LP 140 PY G GV ASA +MDK +K + +G G+ A + R +FE+ A LG P Sbjct: 122 PYVGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETLGAFP 181 Query: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPS 200 V VKP +GSSVG++K L + L A + D +VL+E+++ G E A+LG + P Sbjct: 182 VFVKPCSQGSSVGVAKANNLLELAEGLTEALKLDTKVLVEEFIDGHEVECAVLG-NLEPQ 240 Query: 201 I----RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 I P+ FY ++AKY + ++ + PA + Q A ++ ++ +T LGC+G R+ Sbjct: 241 ASTVGEIAPTQEFYTFDAKYKDESSRLYIPAHITEEQLATVRQDAVRVYTALGCRGLSRV 300 Query: 257 DVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D + D G+ E N PG TS S+ P G+ +++L+ R++ LA Sbjct: 301 DFFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELLDRLISLA 350 >UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacillus RepID=DDL_LACGA Length = 361 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 115/346 (33%), Positives = 176/346 (50%), Gaps = 41/346 (11%) Query: 1 MTDKIAV--LLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------ 40 MTDKI V + GG S+E EVS+ S + + D YP+ Sbjct: 1 MTDKIKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVL 60 Query: 41 --------DPKEV----DVTQLKSMGFQKVFIAL-HGRGGEDGTLQGMLELMGLPYTGSG 87 +P +V ++ +LK VF + HG GEDG LQG+ ++ P+ G Sbjct: 61 DNPKMEVANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDD 120 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI--SALGLPVIVKP 145 V+A+A++MDK +K+L Q AG+PVA W+A+ R E+ ++K E S LG + VKP Sbjct: 121 VLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKP 180 Query: 146 SREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE--ILPSI-- 201 S +GSSVG+S V E + AL AF++D++VL+E+ + G E A+LG + I+ + Sbjct: 181 SNQGSSVGVSHVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQ 240 Query: 202 RIQPSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I +FY YE KY + T PA L ++ LK + C G RID ML Sbjct: 241 IINAKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSML 300 Query: 261 DS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + D + L E N PG T+ S+ P + G+ ++ L+ ++++ A Sbjct: 301 RTEDKEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 346 >UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y930_9FIRM Length = 350 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/343 (33%), Positives = 165/343 (48%), Gaps = 46/343 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGL--REGGIDAYPVDPK-----------EVDVTQL 50 +AVL GG S E VSL+S A VL L + +DP+ E++ Q Sbjct: 6 NVAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEADQW 65 Query: 51 KSMGFQKV------------------------FIALHGRGGEDGTLQGMLELMGLPYTGS 86 + Q++ F LHGR GEDGTLQGM EL +P+ G Sbjct: 66 HTASDQRLRLTLARRNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFELFHIPFVGC 125 Query: 87 GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPS 146 G+ AS L MDK S L + G+ V+P+V +E D++ + L LP VKP+ Sbjct: 126 GMDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEI-----DQKRESLKRLHLPCFVKPA 180 Query: 147 REGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSI-R 202 R GSS+G++K+ L A A +HD +LIE+ +SG E +IL +L ++ R Sbjct: 181 RGGSSIGITKINTWEELDAACACAAKHDRRILIEEAVSGEEIGCSILETPDGLVLGAVDR 240 Query: 203 IQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 I + F+DYE KY+ + CPA L ++ L K W C+G R+D L Sbjct: 241 IHLNSDFFDYEEKYVDTHAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVRVDCFLTP 300 Query: 263 DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D + E NT PGMT+ S P QAG+SF ++ ++E A Sbjct: 301 DQRILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEA 343 >UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteobacteria RepID=C6XGZ9_LIBAP Length = 300 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 +AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 1 MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R Sbjct: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ-DALR-LAFQHDEEVLIEKW 182 D Q + P ++KP + GSS+G+ + + ++ D L+ ++ H +++LIE++ Sbjct: 119 ---DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171 Query: 183 LSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231 Query: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ Sbjct: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291 Query: 301 ILE 303 ++E Sbjct: 292 MVE 294 >UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDP6_ELUMP Length = 353 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 115/336 (34%), Positives = 170/336 (50%), Gaps = 38/336 (11%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGL--REGGIDAY--------------PVDPKEVDVT 48 IAV+ GG S E EVS++S A V L + I+ + P P +++VT Sbjct: 6 IAVVYGGKSVEHEVSVHSAADVCGILSKKYNVINIFISKEGLWFAQEKCGPAQPSDINVT 65 Query: 49 QLKSMG--FQK----------VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMD 96 + S FQ +F LHG GEDG +QG+ ELM PY G GVMASA+ MD Sbjct: 66 PVFSNDCMFQTADGGTISADVLFPVLHGTKGEDGCIQGLFELMETPYVGCGVMASAIGMD 125 Query: 97 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSK 156 K SK+L AG+P P++ + + ++ A+ + LG PV VKP GSS+G++K Sbjct: 126 KEVSKVLAAYAGVPTLPYITFKKGD---SVTKDFKAKTAKLGYPVFVKPVNLGSSIGITK 182 Query: 157 VVAENALQDALRLAFQHDEEVLIEKWLSGP-EFTVAILGE----EILPSIRIQPSGT-FY 210 V E L+ A+ A + D ++LIEK + P E A+ GE E + P+G F+ Sbjct: 183 VKEEAFLEKAIEFALKFDNDILIEKGVQSPKEIFCAVCGEGNNTESSSCGELIPNGHEFF 242 Query: 211 DYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLL 269 DY +KY+ + PA + ++ +Q + G+ R+D +L DGQ Y Sbjct: 243 DYHSKYIDPNGCTVKVPASVSEEEDKLMQKYSRMIFKVFKACGFARVDFLLGKDGQIYFS 302 Query: 270 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 E NT PGM++ SL P R AG + ++ ++ LA Sbjct: 303 EINTLPGMSNASLFPQLWRAAGKKYEDVLDTLINLA 338 >UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31F0A Length = 309 Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 12/306 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGG--IDAYPVDPKEVDVTQLKSMGFQKVFIA 61 K V GG S EREVS SG LR+ G ++ V VDV Q F VFIA Sbjct: 2 KALVAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGADFVDVVQRAEPDF--VFIA 59 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GGEDGT+Q +LE++ +PYTGS +ASAL +DK K + + G+P PW + T+ Sbjct: 60 LHGVGGEDGTVQDLLEILQVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQA 119 Query: 122 FEKGLSDKQLAEI-SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 F + K L + +VKP+R+GSS G+S V L A+ A +D+ VL+E Sbjct: 120 FADYGAGKTLDALWQQFDGRAVVKPARQGSSFGLSVVQERAQLGGAVLGAMSYDDRVLLE 179 Query: 181 KWLSGPEFTVAILGE----EILPSIRI-QPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 +++ G E V +LG E LP + I S +Y ++A Y +++ AGL + +A Sbjct: 180 RYVPGRELAVTVLGRSDAPEPLPVVEIVMASEEYYSFQAHYEIGQSEVRL-AGLPDAVDA 238 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 +++A+ +A++ GC+ + R+D+ L+ D + ++LE NT PG+T P+AA AG++F+ Sbjct: 239 HVRAIAAEAYSAAGCRDFARVDIRLEGD-EPWVLEINTIPGLTETGPTPLAAEHAGLTFA 297 Query: 296 QLVVRI 301 QL+ RI Sbjct: 298 QLIERI 303 >UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TN08_9BACT Length = 308 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 119/307 (38%), Positives = 168/307 (54%), Gaps = 15/307 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGG--IDAYPVDPKEVDVTQLKSMGFQKVFIA 61 +I+VL GG S ER VSL+SG V GL+ G ++ + E + L + F+A Sbjct: 2 RISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSSPEALFSFLAGDRPELCFVA 61 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPW-VALTRA 120 LHG GEDG LQ +L++ G+PYTGSG A++MDK SK + AGL V PW VA+ Sbjct: 62 LHGGWGEDGRLQAVLDMAGVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDV-PWGVAVHPG 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 E + K L++ L +VKP GS+V V E+ L+ AL A++ + L+E Sbjct: 121 EGSSPM--KALSKWGTL----VVKPCCGGSTVATYIVSEEDELRKALSSAWELENRALVE 174 Query: 181 KWLSGPEFTVAILGEEILPS----IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 +++G E TV ++ + +P + I P G FYDY AKY ++Y PA LE S Sbjct: 175 AYVAGRELTVTVVEDRGIPRAFPIVEILPDGEFYDYRAKY-GGGSRYVSPADLEPSVVEV 233 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 + A GC + R+D+ LD + ++LE NT PGMTS+SLVP AA G SF Sbjct: 234 VSRSAEIAHRVSGCSIYSRVDIRLDGKNRPFVLEINTVPGMTSNSLVPKAAMAGGFSFPD 293 Query: 297 LVVRILE 303 L+ I+E Sbjct: 294 LLDHIVE 300 >UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root RepID=B0NI26_EUBSP Length = 356 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 116/352 (32%), Positives = 171/352 (48%), Gaps = 58/352 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY--------PVDPKEVD-VTQLKSMG 54 KI VL GG S ER+VSL SGA + LRE G AY P DP +++ V L G Sbjct: 2 KIIVLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGGG 61 Query: 55 FQK---------------------------------------VFIALHGRGGEDGTLQGM 75 + F+ LHG GE+G LQ Sbjct: 62 LEIAEGIKTTTPDLEALRASRPDQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQAT 121 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 +++G+ YTG ALSMDKL +K +++ +G+P +L R D L ++ Sbjct: 122 FDILGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNR-----NTKDTPLEKLG 176 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF--QHDEEVLIEKWLSGPEFTVAIL 193 LP+++KP GSS+G+ V E ++A+R +F H++EV+IE ++ G E+ +I+ Sbjct: 177 YY-LPLVIKPCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYACSII 235 Query: 194 GEEILPSIRIQPSGTFYDYEAKYLSDETQYFC-PAGLEASQEANLQALVLKAWTTLGCKG 252 + LP I I P ++YE KY Q C P L+ +A +Q KA+ L Sbjct: 236 AGKALPLIEIIPKDGIFNYENKYQDGGAQELCPPVSLDDKTQAKIQRAGEKAFRVLHMDV 295 Query: 253 WGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 + R D ++D +DG+FY LE N PGMT SL+P +AR G+ + L I+E Sbjct: 296 YARADFIVDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIE 347 >UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetales RepID=C7QH14_CATAD Length = 394 Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 107/272 (39%), Positives = 156/272 (57%), Gaps = 18/272 (6%) Query: 51 KSMGFQKVFIAL-HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGL 109 KS+G V + L HG GEDGTLQG+LEL G+PY GSGV+ASA+SMDK K L AG Sbjct: 116 KSLGEVDVVLPLLHGPYGEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGF 175 Query: 110 PVAPWVALTRAEF--EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL 167 V P+ + ++ E+G + +LA + LG PV VKP+R GSS+G++KV A L A+ Sbjct: 176 EVGPYEVVRPRDWGTEEGRAAVRLA-VEELGYPVFVKPARAGSSMGITKVDAPEELDQAI 234 Query: 168 RLAFQHDEEVLIEKWLSGPEFTVAIL--------GEEILPS-IRIQPSGTFYDYEAKYLS 218 A +HD +VL+E + G E +L E LP+ +R+ FYD++AKYL Sbjct: 235 DAARRHDPKVLVEAAIEGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLD 294 Query: 219 DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-----GQFYLLEANT 273 T+ PA L A + +++ + + TLGC+G R+D G+F + E NT Sbjct: 295 GSTEVDIPARLSAEEIEDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINT 354 Query: 274 SPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 PG T S+ P + AG+S+ +L+ R+++ A Sbjct: 355 MPGFTPTSMFPQMWQAAGLSYPELIARLIDTA 386 >UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS09_SYNAS Length = 355 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 177/341 (51%), Gaps = 45/341 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------D 41 ++ +++ G S+E+EVSL SG + + + P+ D Sbjct: 10 RVGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCTRD 69 Query: 42 PKE--------VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASAL 93 +E V +LK+ VF+ALHG+ GEDG +QG+LEL+ +PYTGSGV+ASAL Sbjct: 70 VEEDLAEEAVRVPYEELKTR-VDLVFLALHGKYGEDGCMQGLLELLKIPYTGSGVLASAL 128 Query: 94 SMDKLRSKLLWQGAGLPVAPWVALTRA----EFEKGLSDKQLAEISALGLPVIVKPSREG 149 MDKL S+ + + G+ V V + R E E L ++ EI G P +VKPSREG Sbjct: 129 GMDKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQEI---GFPCVVKPSREG 185 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTF 209 S G+ KV++ L DAL AF D L+E+++ G E T ILG P + PS T Sbjct: 186 CSTGVKKVMSRAGLSDALNGAFLWDCTALVEEFIDGMEVTCGILGGN--PPTALTPSETI 243 Query: 210 -----YDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDG 264 E K+L + + PA L +Q + +KA+ L KG+ RID+ + S G Sbjct: 244 ATSDVLSLEDKFLYGQGENKTPARLPGETLMKIQEVAVKAFEALDLKGYARIDMFVTSAG 303 Query: 265 QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + +LE NT PGMT +++ A +G++ + LV RILE A Sbjct: 304 RVLVLEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAA 344 >UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus RepID=C7RG73_ANAPD Length = 345 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 109/340 (32%), Positives = 175/340 (51%), Gaps = 45/340 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREG-----------------GIDAYPVDP---- 42 + +L GG S+E ++SL S + L E D D Sbjct: 3 NVYILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSEAFDKIDTDNEFDL 62 Query: 43 -KEVDVTQLKSMG----------FQKVFI--ALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 KEV + KS+ + K + A+HG GEDGT+Q +L+++G+ Y G+G++ Sbjct: 63 VKEVKENKTKSIADFLTCLSKEDYSKTIVIPAVHGTYGEDGTIQALLDVIGIAYIGNGLL 122 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 +SA+ MDK+ S +++ L A ++ + F+ +D+ + EI GLP+IVKPS G Sbjct: 123 SSAICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEEI---GLPLIVKPSANG 179 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSG-- 207 SSVG+SKV +N L A A ++D++VL+E+ + G E A++G + P + +P+ Sbjct: 180 SSVGVSKVTNKNELLAAGDEALKYDKKVLVEELIEGQEIEFAVVGY-MNPDVS-EPAAYI 237 Query: 208 ---TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDG 264 TF DY+AKY S T+ P LE + Q V +A+ GC+G+ R+D+ L D Sbjct: 238 SDHTFLDYDAKYFSKSTKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVDIFLGKDN 297 Query: 265 QFYLLEANTSPGMTSHSLVP-MAARQAGMSFSQLVVRILE 303 FY+ E NT PG T S + SFS+++ R+++ Sbjct: 298 NFYVNEINTFPGFTPSSFFARLCELMYNESFSEVLDRLIK 337 >UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes RepID=C7G8P6_9FIRM Length = 351 Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 97/268 (36%), Positives = 157/268 (58%), Gaps = 18/268 (6%) Query: 42 PKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 P +++ Q+ + VF+ALHG GE+G +Q +L G+ YTG+G ++SAL+MDK SK Sbjct: 92 PNVIELCQMSDI----VFMALHGENGENGKIQAAFDLFGIRYTGTGYLSSALAMDKEMSK 147 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL--PVIVKPSREGSSVGMSKVVA 159 L+ AG+P ++ +A+ SD +I+ LG+ P +VKP GSS+G+S +A Sbjct: 148 KLFLSAGIPAPKGASMKKAD----CSD----DITKLGVQFPCVVKPCCGGSSIGVS--IA 197 Query: 160 ENA--LQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYL 217 NA + AL AF+ +E +++E+++ G EF+V ++ + LP I I P FYDY+ KY Sbjct: 198 HNAEEYKAALDEAFRWEENLIVEEYVKGREFSVGVIEGKALPIIEIAPVQGFYDYKNKYK 257 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 + CPA L + +Q + LG + R D +LD + Y LEANT PGM Sbjct: 258 AGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFLLDENENIYCLEANTLPGM 317 Query: 278 TSHSLVPMAARQAGMSFSQLVVRILELA 305 T SL+P A+ G++F++L ++++++ Sbjct: 318 TPTSLLPQEAQVVGVNFNELCEKLIQIS 345 >UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C4ZI29_EUBR3 Length = 369 Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 109/350 (31%), Positives = 171/350 (48%), Gaps = 54/350 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD---------------------- 41 I VL GG S ER+VS +G+ V L+E G +D Sbjct: 20 NIVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEI 79 Query: 42 -------PKEV-DVTQLKSMGFQK------------------VFIALHGRGGEDGTLQGM 75 P E D+ ++K+ + VF+ALHG GE+G +Q Sbjct: 80 SVQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAA 139 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 +L G+ YTGS ++SA++M+K SK + G+P +++TRA + ++ L Sbjct: 140 FDLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLT--- 196 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE 195 LP +VKP GSS+G++ V + AL AF+ + E++IE+++ G EF+V ++ Sbjct: 197 ---LPCVVKPCCGGSSIGVTIVRDAAEFKAALDDAFKWENELVIEEFVQGREFSVGVIEG 253 Query: 196 EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 + LP I I P FYDY+ KY + T CPA L ++Q + +G + R Sbjct: 254 KALPIIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSR 313 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D +L+ + + LEANT PGMT SL+P A GMSF+QL +++++ Sbjct: 314 SDFLLNDKNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLIDIS 363 >UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomycetales RepID=D1BRV4_XYLCX Length = 349 Score = 172 bits (437), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 116/311 (37%), Positives = 175/311 (56%), Gaps = 14/311 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQK---VFI 60 ++ VL GG S ER+VSL SG V LR G+D V +VD L+ + + V+ Sbjct: 38 RVVVLAGGLSHERDVSLRSGRRVAEALRSVGVD---VAVHDVDAQLLRYLDEHRPDVVWP 94 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GGEDG+L+ +LEL G+PY G+G AS L+ DK +K Q AGL W+ L + Sbjct: 95 LLHGAGGEDGSLRDVLELAGVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQ- 153 Query: 121 EFEKGLSDKQLAEISA--LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 E + L + + I A GLPV+VKP+R GS++G+++V +++ L A+ F + + L Sbjct: 154 ELFRDLGAQGVLSIVAERFGLPVVVKPTRGGSALGVTRVTSKDGLARAMVDCFAYGDSAL 213 Query: 179 IEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 IE+ + G E V+++ G LP++ I G YD++A+Y +YF PA L Q Sbjct: 214 IERAVDGVEIAVSVIDGMDGPVALPAVEIIVDGP-YDFDARYNPGRVEYFAPARLSPDQA 272 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 A++ + + A L + R D++L +DG +LE N +PGMT SL+P AA AG Sbjct: 273 AHVAGVAVAAHQALDLRHLSRTDLILQTDGTAQVLEVNVAPGMTETSLLPQAAVAAGHDL 332 Query: 295 SQLVVRILELA 305 L +++E A Sbjct: 333 GTLYRQVVEHA 343 >UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG04_9FIRM Length = 357 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 118/349 (33%), Positives = 168/349 (48%), Gaps = 52/349 (14%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLRE--------------------GGIDAY------ 38 +AVL G S+E EVSL S A+VL + G ID Sbjct: 6 VAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIESDRWL 65 Query: 39 ---PVDPKEVD-------VTQLKSMGFQ-----KVFIALHGRGGEDGTLQGMLELMGLPY 83 PV P + + +L G Q VF LHG EDG +QG+LE+ GL Y Sbjct: 66 QNGPVTPAFISPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGLLEMAGLAY 125 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR---AEFEKGLSDKQLAEISALGLP 140 G GV+ASA MDK + + + AG+ + P+ LTR A F++ +++ LA + G P Sbjct: 126 VGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALAHFDE--TERMLA--AKHGYP 181 Query: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE----E 196 + +KP+ GSSVG+ K L AL AF+ D +V+ E + G E A+LG E Sbjct: 182 MFIKPANTGSSVGVGKAKDAGGLCAALSEAFRFDRKVIAETAVVGDELECAVLGNFDRAE 241 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 I P FYDY KYL D T + PA + ++ ++A+ +GC G R+ Sbjct: 242 ASCVGEIVPRHEFYDYSGKYLDDSTDLYIPARISGEASERIRQTAVRAFAAMGCTGLSRV 301 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D L +G+ L E NT PG TS S+ P G+ + +L+ R++ELA Sbjct: 302 DFFLTREGRVVLNEINTLPGFTSISMYPKLFEAVGLPYPELISRLIELA 350 >UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=D1BDJ8_SANKS Length = 400 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 120/358 (33%), Positives = 181/358 (50%), Gaps = 57/358 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------DPK------- 43 ++ +L GG S E +S + A V+ + D PV DP Sbjct: 36 RVVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQWVLVEDDPDRWAITDG 95 Query: 44 ---EVDVTQLKSM-----------------------GFQKVFIALHGRGGEDGTLQGMLE 77 EVD T + + VF LHG GEDGTLQGMLE Sbjct: 96 RLPEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGPFGEDGTLQGMLE 155 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 L + Y G+GV+ASA+ MDK KL+ G GLPV P+ + E+++ ++ A ++ L Sbjct: 156 LADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRD-AEAVTARVAGL 214 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL---- 193 GLPV VKP+R GSS+G+SKV L A+ A +HD +V++E + G E A+L Sbjct: 215 GLPVFVKPARAGSSLGISKVDDLADLPAAVAEARRHDPKVIVEAGIVGREIECAVLGGRR 274 Query: 194 GEEILPSI--RIQPSGT---FYDYEAKYLSDET-QYFCPAGLEASQEANLQALVLKAWTT 247 GE S+ IQ + T FYD+EAKYLS+++ + CPA L A +Q + ++ + Sbjct: 275 GERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCPADLSPELVAEVQDVAVRTFEA 334 Query: 248 LGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + +G R+DV + G+ + E NT PG T S+ P ++G+ +++L+ ++ELA Sbjct: 335 VSGEGLSRVDVFVTEAGEVVVNEINTMPGFTPFSMYPRMWDRSGLPYAELITELVELA 392 >UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWG2_9CLOT Length = 342 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/253 (39%), Positives = 146/253 (57%), Gaps = 5/253 (1%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 V ALHG+ GEDGT+QG+L+L G+P+ G + +SA MDK+ + ++ + AG+P A + L Sbjct: 80 VIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDKVITNVMLEQAGIPQARFTWL 139 Query: 118 TRAEFEKGLSDKQLAEISALG-LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 EF+ + L LG PV VKP+ GSSVG+SK L+ A+ A + D + Sbjct: 140 YAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVGVSKAENREELRAAIAKAAKEDGK 199 Query: 177 VLIEKWLSGPEFTVAILGEE--ILPSI--RIQPSGTFYDYEAKYLSDETQYFCPAGLEAS 232 +LIE+ + G E A+LG E +L S I PS FYDYEAKYLS + + PA LE+ Sbjct: 200 ILIEENIVGQEVECAVLGNEDDLLASTVGEIAPSNEFYDYEAKYLSGTSGLYIPAHLESG 259 Query: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGM 292 +++ KA+ LGC G R+D + + + L E NT PG TS S+ P G+ Sbjct: 260 VIETIRSTAQKAYQVLGCSGLARVDFFVRNGSEVLLNELNTLPGFTSISMYPKLMEHEGL 319 Query: 293 SFSQLVVRILELA 305 S +L+ R+++LA Sbjct: 320 SNQELIHRLIQLA 332 >UniRef50_Q8RDQ4 D-alanine--D-alanine ligase n=10 Tax=Fusobacterium RepID=DDL_FUSNN Length = 287 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 31/304 (10%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIAL 62 +IAV +GGTS+E+E+SL SG AVL L++ G DAY V E + V+ + ++ L Sbjct: 2 RIAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GE+G +Q +L+++G YTGSGV+ASA++MDK ++K + Q G+ P E Sbjct: 62 HGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIK-TPKSYRPVEEI 120 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGM----SKVVAENALQDALRLAFQHDEEVL 178 E+ PVI+KP EGSS G+ +K AE A++ +LA + + Sbjct: 121 ER--------------FPVIIKPVDEGSSKGLFLCNNKEEAEEAVK---KLA-----KPI 158 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 IE ++ G E TV +L E L ++I P + YDY++KY + + PA +E Sbjct: 159 IEDYIIGEELTVGVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEA 218 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 + K + G KG R D +L S+G+ Y LE N+SPGMT SL+P A G SF Sbjct: 219 MKIAEKIHSEFGMKGISRSDFIL-SEGELYFLEVNSSPGMTKTSLIPDLATLKGYSFDD- 276 Query: 298 VVRI 301 VVRI Sbjct: 277 VVRI 280 >UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacillus RepID=DDL_LACDA Length = 362 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/349 (31%), Positives = 179/349 (51%), Gaps = 44/349 (12%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------ 40 MT K + ++ GG S+E EVS+ S + + + D +P+ Sbjct: 1 MTKKTQVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVL 60 Query: 41 ---------DPKEVDVTQLKSMG----FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 + K +++ L + +F +HG GEDG LQG+ L+ P+ G Sbjct: 61 EEPGYMVEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA--LGLP-VIVK 144 V+A+A++MDK +K+L Q AG+PVA WV++ R E+E + K + + LG + VK Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVK 180 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR-- 202 PS +GSSVG++ V ++ +AL AF++D++VL+E+ + G E A+LG + P + Sbjct: 181 PSNQGSSVGITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGND-HPVVSGV 239 Query: 203 ---IQPSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I T+Y YE KY ++ T PA + A +Q LK + C G R+D Sbjct: 240 GQIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDS 299 Query: 259 ML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 ML +SDG+ E N PG T+ S+ P +AG+S+ L+ R++ LA+ Sbjct: 300 MLRESDGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLAE 348 >UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria RepID=DDL_HELMI Length = 366 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 117/348 (33%), Positives = 181/348 (52%), Gaps = 46/348 (13%) Query: 1 MTDKIAVLLGGTSAEREVSLNS----------------------------GAAVLAGLRE 32 M IAV+ GG S E EVSL S G+ V+ LR+ Sbjct: 2 MKQTIAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGSNVIDNLRK 61 Query: 33 G----GIDAYPV-DP------KEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 G G Y + DP +E VT+ K + F LHG GEDGT+QG+ E + Sbjct: 62 GQQPYGQRVYFIPDPTCPGLIEENPVTR-KPVPVDVFFPVLHGPNGEDGTIQGLFEAANV 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI-SALGLP 140 PY G GV+ASA MDK K L+ + LP P++ + R +E ++ + E+ LG P Sbjct: 121 PYVGCGVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESA-REQVIDEVEDRLGYP 179 Query: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG-EEILP 199 VKP+ GSSVG+SK L A A ++D ++++EK ++ E V++LG +E++ Sbjct: 180 CFVKPANMGSSVGISKATNRAELVAAFDDAVRYDRKLIVEKGINVREIEVSVLGNDEVVA 239 Query: 200 SI--RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 S+ I P+ FYDY+AKY + +++ PA + A+ A Q + ++A+ + G R+D Sbjct: 240 SVPGEIVPAHEFYDYDAKYAAADSRLLIPAPIAAADVATFQEMAIRAFRAIDGSGLSRVD 299 Query: 258 VMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 +LD + G+ Y+ E NT PG TS S+ P G+ + +L+ R+++L Sbjct: 300 FLLDKNSGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVDL 347 >UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomycetales RepID=A0LWW5_ACIC1 Length = 333 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/311 (34%), Positives = 169/311 (54%), Gaps = 10/311 (3%) Query: 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKV 58 M+D + VL GG S EREVSL S V+ LR G+D VD + +L + V Sbjct: 1 MSDLGHVLVLAGGVSFEREVSLASARRVIEALRRLGVDVDLVDVDASVLDRLTADPPDAV 60 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 FIA+HG GEDG L+ +L+L G+PY G+ + L+ DK +K + Q AG+ +A + Sbjct: 61 FIAMHGSEGEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFS 120 Query: 119 RAEFEKGLSDKQLAE--ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 + + L QL + + LGLP++VKP+R GS++G++ V A AL F +D Sbjct: 121 QTAI-RDLGGHQLLDRCVRRLGLPLVVKPARGGSALGVTIVREATAFAHALVTCFAYDTV 179 Query: 177 VLIEKWLSGPEFTVAILGEE-----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEA 231 L+E+++ G E ++++ ++ LP + I+P +DY A+Y + T+Y PA + Sbjct: 180 ALVEQYVVGTELAISVVEDDDGTPRALPPVEIRPVDGMFDYAARYTAGMTEYHVPARITE 239 Query: 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 + + L+A LG + R DV++ +D + LE N +PGMT SL+PMAA + G Sbjct: 240 TARDRAVDVALRAHQALGLRDLSRTDVIVTADDEVLYLETNVAPGMTPTSLLPMAAAEVG 299 Query: 292 MSFSQLVVRIL 302 + L +L Sbjct: 300 IDLGTLCRDLL 310 >UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D443_PAESJ Length = 359 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 112/346 (32%), Positives = 175/346 (50%), Gaps = 48/346 (13%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV---------------DPKEV 45 M K+ VL GG S E EVSL + VL + E +AYPV E+ Sbjct: 1 MRTKLYVLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPIAKDEL 60 Query: 46 DVTQLKSM---------------------GFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 + +L + G + V LHG GEDGT+QG+LEL+ +PY Sbjct: 61 TIERLIATPTFPDPARSIGEILSGIMALPGPKVVLPLLHGPNGEDGTVQGLLELVNVPYV 120 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA---LGLPV 141 G+GV+++AL++DK SK + AG+ + +E+ ++D++ A + P Sbjct: 121 GNGVLSAALTLDKAMSKQVLAQAGINQTEYRVY---RYEEWITDEESVLRKAEDSIEYPC 177 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----I 197 VKP+ GSS+G+S+ L +R AF +D++++IE+ +SG E VA++G E Sbjct: 178 YVKPASLGSSIGISRCTNRGELLAGIREAFSYDKKLVIEREVSGREIQVAVIGNERPLAS 237 Query: 198 LPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 LP I F+DYE+KY+ PA L ++ L ++A+ GC+G R+D Sbjct: 238 LPGEFIH-DHIFFDYESKYMDKRLTMQIPANLADGLTPRIRELAVRAYQAHGCEGLARVD 296 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVP-MAARQAGMSFSQLVVRIL 302 LD +GQ YL E N PG T+ S+ P M R G ++S+L+ +++ Sbjct: 297 FFLDGEGQLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLI 342 >UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria RepID=C1F9Q0_ACIC5 Length = 400 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 101/258 (39%), Positives = 144/258 (55%), Gaps = 10/258 (3%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 +F LHG GEDGT+QG+LEL G+ Y GSGV+ SA MDK K L+ A LP+ V Sbjct: 129 IFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKLPITKHVTF 188 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 R E+EK +AL PV VKP+ GSSVG+SK L+ A+ LA D ++ Sbjct: 189 LRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIELAAGFDRKI 248 Query: 178 LIEKWLSGP-----EFTVAILGEEILPSI---RIQPSGTFYDYEAKYLSDETQYFCPAGL 229 ++E+ + G E VA+LG + I P FYDYEAKYLS+ + PA L Sbjct: 249 VVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEGSVPIIPAKL 308 Query: 230 EASQEANLQALVLKAWTTLGCKGWGRIDVMLD--SDGQFYLLEANTSPGMTSHSLVPMAA 287 +Q ++ + + A+ C G R+D +++ + G+ YL E NT PG TS S+ P Sbjct: 309 TKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFTSISMYPKLW 368 Query: 288 RQAGMSFSQLVVRILELA 305 +G+ +S+L+ R++ELA Sbjct: 369 EASGLPYSKLIDRLIELA 386 >UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema RepID=DDL_TREDE Length = 368 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 109/352 (30%), Positives = 176/352 (50%), Gaps = 53/352 (15%) Query: 5 IAVLLGGTSAEREVSLNSGAAV-----------LAGLREGGI-------DAYPVDPKEVD 46 IA++ GG S+E EVSL S +++ L G+ + G + + E Sbjct: 3 IAIIYGGKSSEHEVSLQSASSIIRTIDKKHKLHLIGISKNGAWYLHGDEERERIIKNEKA 62 Query: 47 VTQLKSMGFQKV------------------------FIALHGRGGEDGTLQGMLELMGLP 82 V ++K ++V F LHGR GEDGT+QG+ E+ LP Sbjct: 63 VLKIKKDEAKRVTVIPGGGAKKGLKAGDEFLPTDAVFAVLHGRFGEDGTIQGLFEMADLP 122 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQL---AEISALGL 139 Y G VM++++SMDK ++K++W +GLP+ P++A+ R +++ K + AE L Sbjct: 123 YVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKAILARAE-KDLEY 181 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE--- 196 P+ +KP R GSSVG V N L + +F D ++L+E + E ++ G Sbjct: 182 PLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWDNKILVEACIEAREVECSVTGNTKTV 241 Query: 197 -ILPSIRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 +P I P+ FYDYEAKY + + PA L +Q ++ +KA+ L G Sbjct: 242 AYIPG-EIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGLS 300 Query: 255 RIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D +D G+ YL E NT PG T+ S+ P +G+ +++L++ ++ELA Sbjct: 301 RVDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMHLIELA 352 >UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsieae RepID=DDL_RICCK Length = 354 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 162/303 (53%), Gaps = 12/303 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 IA++ GG SAEREVSL S V L G +D +L+ + VF LHG Sbjct: 58 IALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEIKPDIVFNCLHG 117 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG L G+L +M +PYT SGV++SAL+ DK+ S+ + + +A + + +++ K Sbjct: 118 TYGEDGCLSGLLNIMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSDNIK 177 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 I + P ++KP +GSS+G+ + E+ A F + ++V+IEK++ Sbjct: 178 ---------IEPMKRPYVIKPITQGSSIGIEVIFEEDDFNFA-NYDFPYGDQVIIEKYIK 227 Query: 185 GPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E VA+L + L + I+ FYDYE KY ++ CPA + + L K Sbjct: 228 GRELQVAVLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTNLYDKLLIESEK 287 Query: 244 AWTTLGCKGWGRIDVML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 + T+ CKG R++ +L D + Y LE NT PGMT S+VP A AG++F+ L+ I+ Sbjct: 288 IYKTMNCKGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEII 347 Query: 303 ELA 305 + A Sbjct: 348 KAA 350 >UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Streptococcus pneumoniae RepID=C1C760_STRP7 Length = 321 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 108/330 (32%), Positives = 156/330 (47%), Gaps = 42/330 (12%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD-----PKEVDVTQLKSMGF 55 + KI VL GG S EREVS NS + L G D +D E+ + G Sbjct: 3 IIKKIVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGL 62 Query: 56 QK------------------VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK 97 K VF+A HG GE+G LQ + ++ + YTG+ +++A+SMDK Sbjct: 63 NKQKVEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDK 122 Query: 98 LRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKV 157 SK++ G+ A + + R I A P+++KP R GSS G+ Sbjct: 123 KLSKIVASSVGIKCASNLMVDR--------------IQANDFPIVIKPIRSGSSKGIK-- 166 Query: 158 VAENALQDALRLAFQHDE--EVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAK 215 + +N Q + +H E +EK++ G EF+V ILGE +LP I I+ FYDY K Sbjct: 167 ILQNKKQFDIYYK-EHPELGSFFVEKYIKGREFSVGILGETVLPVIEIKVKNGFYDYNNK 225 Query: 216 YLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSP 275 Y + PA + LQ K LG + R D ++D G Y +E+N+ P Sbjct: 226 YTVGAAEEVVPAKISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEKGDVYFIESNSLP 285 Query: 276 GMTSHSLVPMAARQAGMSFSQLVVRILELA 305 GMT SL+P A+ AG+ F L RI+EL+ Sbjct: 286 GMTKTSLLPQEAKAAGIDFPNLCERIIELS 315 >UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCJ4_THET1 Length = 362 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 46/344 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 ++ +L GG SAE +VS+ S +++ L++ ID P Sbjct: 5 RLLLLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLASSAL 64 Query: 41 ---DPKEVDVTQLKSM---------GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 D D+ + S VF LHG GEDGT+QG LEL+ +PY GSGV Sbjct: 65 FAGDSDVRDIVPVDSQPRSVPEALSAVDVVFPLLHGPYGEDGTVQGFLELVNVPYVGSGV 124 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQ--LAEI-SALGLPVIVKP 145 + S+LSMDK+ K +++ GLP+ ++ + R+++ LSD + +++I S L PV VKP Sbjct: 125 LGSSLSMDKIAMKKMFESEGLPITRYLGILRSDW---LSDPEGIISKIESELEYPVFVKP 181 Query: 146 SREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI---- 201 + GSS+G++K ++L AL LA ++D +++E+ + E A+LG + P Sbjct: 182 ANLGSSIGITKAKDRSSLLQALELASKYDRRLIVEQGVEARELECAVLGND-YPRASVVG 240 Query: 202 RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD 261 I P FY +EAKY+S+ ++ PA + S ++ ++A+ + G R+D L Sbjct: 241 EILPGDEFYTFEAKYISESSKTIIPADIPPSVSDEIRDYAVRAFKAVDAAGLARVDFFLT 300 Query: 262 SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 S+ + + E NT PG T S+ P +G+S+ LV ++L+LA Sbjct: 301 SENKVLVNEINTIPGFTPISMYPKLWEASGLSYPDLVRKLLDLA 344 >UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=DDL_CLOCE Length = 376 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 148/255 (58%), Gaps = 8/255 (3%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 +F LHG GEDGT+QG+ EL G+PY G GV+ SA+ MDK +K++++ GLP ++ Sbjct: 107 IFPVLHGCNGEDGTIQGLFELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVF 166 Query: 118 TRAEFEKGLSDKQLAEISA-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 R + + D +A+I L P VKPS GSSVG++K +L AL +A ++D Sbjct: 167 NRKQVYNRIED-VVAQIEGRLTYPCFVKPSNAGSSVGVNKASDRESLVKALNIAAKNDRR 225 Query: 177 VLIEKWLSGPEFTVAILGEE--ILPSI-RIQPSGTFYDYEAKY-LSDETQYFCPA-GLEA 231 +L+E++++G E A+LG + + ++ + P FYDYEAKY + D ++ PA L Sbjct: 226 ILVEEFINGREIECAVLGNDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSK 285 Query: 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQA 290 ++ ++A+ L C G R+D + + G+ Y+ E NT PG T S+ P + Sbjct: 286 ETVEKIREYAVRAFKCLDCAGLSRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAAS 345 Query: 291 GMSFSQLVVRILELA 305 G+ +S+L+ +++ELA Sbjct: 346 GIPYSELINKLIELA 360 >UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacteria (class) RepID=DDL_KINRD Length = 376 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 124/363 (34%), Positives = 172/363 (47%), Gaps = 63/363 (17%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD---------------------- 41 ++AV+ GG S+E +S + A VLA L D P+ Sbjct: 8 RVAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTDGA 67 Query: 42 -------------PKEVDVTQLKSMG-------------FQKVFIALHGRGGEDGTLQGM 75 P +VD L+ +G V LHG GEDGTLQG+ Sbjct: 68 LPEVPATGTPVGLPLDVDTKALQRLGGAPGAPALAELGEVDVVLPLLHGPFGEDGTLQGL 127 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 LEL Y GSGV+ASA MDK KLL G GLPV PW + RA D +AE+ Sbjct: 128 LELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSF-RARRWDTDRDGVVAEVE 186 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL-- 193 ALG PV VKP+R GSS+G+++V + L A+ A HD +V++E L G E +L Sbjct: 187 ALGYPVFVKPARAGSSIGITRVTSREGLAAAVAEAVSHDPKVVVEAALVGREIECGVLED 246 Query: 194 --GEEILPS----IRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWT 246 G E L S + + FYD+EAKYL S + CPA L A ++ ++ + Sbjct: 247 LDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCPADLPDDVVAAVRRTAVRVFE 306 Query: 247 TLGCKGWGRIDVMLD----SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +G +G R+D+ +D DG + E NT PG T S+ P G+ + +LV R++ Sbjct: 307 AMGAEGLARVDLFVDPARGEDG-IVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRLI 365 Query: 303 ELA 305 +LA Sbjct: 366 QLA 368 >UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB62_BREBN Length = 375 Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 96/252 (38%), Positives = 146/252 (57%), Gaps = 4/252 (1%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 VF +HG GEDGT+QG+LEL +PY G+GVMASA+ MDK K ++ AGLP +V L Sbjct: 106 VFPVVHGPFGEDGTIQGLLELANIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGL 165 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 R+++EKG D LG P VKP+ GSSVG++K L+ AL +A + D + Sbjct: 166 LRSQWEKGQDDVMDRIERELGYPCFVKPANMGSSVGINKAKNREELKHALDVAAKFDRRL 225 Query: 178 LIEKWLSGPEFTVAILG-EEILPSI--RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 ++E+++ E + +LG EE++ S+ + + FYDYEAKY T+ PA + Sbjct: 226 IVEEFVQVRELEIGVLGNEELMTSVVGEVIAAKEFYDYEAKYKGAGTELSIPAIVPEHVS 285 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 + + +A+ L G R+D D + + Y+ E NT PG T S+ PM + AG+ Sbjct: 286 EQIAEIAKQAFQALDGSGLSRVDFFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVG 345 Query: 294 FSQLVVRILELA 305 +S+L+ R+++LA Sbjct: 346 YSELIDRLVQLA 357 >UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli RepID=DDL_LISW6 Length = 370 Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 111/357 (31%), Positives = 174/357 (48%), Gaps = 55/357 (15%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------DP 42 M K+ +L GG SAE EVSL + +V+ L +A P+ D Sbjct: 1 MKTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLTGKLDF 60 Query: 43 KE------VDVTQLKSMGFQK-------------------VFIALHGRGGEDGTLQGMLE 77 E + +L + +K VF LHG GEDGT+QG+ E Sbjct: 61 VEQLRFSATNTVKLAATESEKSEGEAISPAVLEADDQETVVFPLLHGPNGEDGTVQGLFE 120 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 ++ +PY G+GV+AS+ +MDK+ K ++ AG+P P VA+ +++ + L Sbjct: 121 VLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVSEMEEVL 180 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE-- 195 PV VKP+ GSSVG+SK + L+DA+ AF +D V++E+ + E + +LG Sbjct: 181 TYPVFVKPANLGSSVGISKATNKKELEDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDT 240 Query: 196 -------EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTL 248 EILP + TFYDY+AKY + T P ++ ++ ++A+ L Sbjct: 241 PVCSVPGEILPEGAV---ATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGL 297 Query: 249 GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G R D L D Q +L E NT PG T +S+ P+ ++ G+ +S L+ R+++LA Sbjct: 298 DASGLVRADFFLTDDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYSALIERLVDLA 354 >UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0K0_9FIRM Length = 359 Score = 170 bits (430), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 114/333 (34%), Positives = 175/333 (52%), Gaps = 32/333 (9%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLRE--GGI---------DAYPVDPKEVDV 47 M++K +AV+ GG S E E+S S + GLRE G + + + VD +D Sbjct: 5 MSEKKSVAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVDDGIIDF 64 Query: 48 TQL------KSMGFQK-------VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALS 94 T+L +S ++ V+ LHG GEDG +QG+ E+ +PY G V ASA++ Sbjct: 65 TKLDVKNEAESCTIEQCLTDVDIVWSVLHGPYGEDGKIQGLFEMYDVPYVGCNVTASAIA 124 Query: 95 MDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGM 154 MDK+ +K +++ AGL + L E+ + +++L I LG P+ VKP+ GSSVG+ Sbjct: 125 MDKVIAKNVFEHAGLKTVKYELLLEKEY-RDDEERELERIEKLGFPMFVKPANMGSSVGI 183 Query: 155 SKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPSGTFYD 211 SK E L+ A+ AFQ+D ++IE+ + G E VA+ G E + I+P FYD Sbjct: 184 SKATDEKKLKKAIEDAFQYDYRLIIEENIIGKEVEVAVFGNGPYEASVAGEIRPRAEFYD 243 Query: 212 YEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLL 269 +AKY S +T PA + Q LQ A + CKG R+D + +D + ++ Sbjct: 244 VDAKYHSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGICRVDSFIKADSNEIFIN 303 Query: 270 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 E NT PG T S+ P +G+S +L+ RI+ Sbjct: 304 EVNTMPGFTEISMYPKLWEVSGISNKELLERII 336 >UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibrionales RepID=DDL_DESDG Length = 308 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 156/306 (50%), Gaps = 16/306 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS-MGFQKVFIAL 62 +I ++ GG S ER+VSL+ + A L G DP L++ F+ L Sbjct: 2 RILLIAGGWSEERDVSLSGARGIHAALERLGHQVTLFDPCRTLAGLLEAAQAHDFAFLNL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR--- 119 HG+ GEDG +Q +LE G+PY GSG S L+++K +K ++ GLP WV L Sbjct: 62 HGQPGEDGLVQALLETAGVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPG 121 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 A++E + P +K + GSS+ + +V L AL F E +I Sbjct: 122 ADWEPPFA-----------FPAFIKSNNGGSSLALHRVSCPGELARALDELFTRGGEAII 170 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPSGT-FYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 E + G E T +LG+E LP I I+P G F+DY +KY + + CPA L A ++ Sbjct: 171 EPAVEGVEVTCGVLGDEALPPILIRPLGAGFFDYASKYTPGQAEELCPAPLPGEVTAKVR 230 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 L+A LG +G+ R D +L G LLE NT PGMT+ SL+P A G+SF L+ Sbjct: 231 EYALRAHRALGLRGYSRSDFILTPAGALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLI 290 Query: 299 VRILEL 304 R++EL Sbjct: 291 GRLIEL 296 >UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD66_9FIRM Length = 364 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/263 (36%), Positives = 145/263 (55%), Gaps = 8/263 (3%) Query: 49 QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAG 108 +++ M V LHG GEDGT+QG+LEL G+ Y G GV+AS++ MDK + L++ G Sbjct: 95 RVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIAYVGCGVLASSVCMDKAVANALFEANG 154 Query: 109 LPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALR 168 +P WVA R E EK L LG PV VKP+ GSSVG+SKV + L+ A+ Sbjct: 155 VPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVFVKPANAGSSVGISKVSNQEELKAAIA 214 Query: 169 LAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQP-----SGTFYDYEAKYLSDETQY 223 LA ++D +V+ E ++ G E A++G + P++ +P FY Y+ KY + +Q Sbjct: 215 LALENDRKVVFEAFVDGQEVECAVIGSD--PAVATRPGEILAGAEFYTYDDKYKNGVSQT 272 Query: 224 FCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSL 282 PA L ++ ++ A+T L C+G R D ++ + G+ + E NT PG T+ S+ Sbjct: 273 VIPAHLPEAKLDEVKTYAAMAYTALNCEGLARCDFFVEKNTGRVLINEINTFPGFTAISM 332 Query: 283 VPMAARQAGMSFSQLVVRILELA 305 P G+ QL+ R++ LA Sbjct: 333 YPKLMEHEGLPVPQLIDRLIALA 355 >UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUR2_9FIRM Length = 367 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 99/270 (36%), Positives = 146/270 (54%), Gaps = 12/270 (4%) Query: 39 PVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKL 98 P D KE D VF LHG GEDGT+QG LE++G+PY G+GV ASA MDK+ Sbjct: 92 PGDIKEADTI---------VFPVLHGPNGEDGTIQGFLEVLGMPYVGAGVTASACGMDKV 142 Query: 99 RSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVV 158 SK L+ AGLP P+VA E+ + + L P+ VKP+ GSSVG+SK Sbjct: 143 ISKQLFHQAGLPQVPYVAFDSREWAQSPEEWMNRCEGNLLYPLFVKPANMGSSVGISKAT 202 Query: 159 AENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG-EEILPSI--RIQPSGTFYDYEAK 215 L+ A+ A Q D +++E+ +S E VA+LG ++ S+ R+ + FYDY+ K Sbjct: 203 TTEELRAAVEKALQFDRRIVVEQGISAQECEVAVLGNDDAHASVVGRLVKTADFYDYDEK 262 Query: 216 YLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSP 275 Y+++ + PA L + +Q L+A+ L KG R+D + + Y+ E NT P Sbjct: 263 YVNNTVEMEIPAQLPDAISDKIQEYALRAYRALDGKGLSRVDFFVTASHDIYINEINTMP 322 Query: 276 GMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G T +S+ P G++ L+ +L+LA Sbjct: 323 GFTPYSMYPCLWEATGLNTRDLIEELLQLA 352 >UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FYV0_9DELT Length = 360 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 178/341 (52%), Gaps = 40/341 (11%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGL-------------REGGIDAYPVD-----PKEV 45 ++A++ GG S+E +VS+ S VLA + REG P+D P E Sbjct: 5 RLALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPGPTEA 64 Query: 46 DVTQLKSMG--------FQK----VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASAL 93 + + G F + F LHG GEDGT+QG+ E+ +PY GSGV+AS+L Sbjct: 65 PLRAVLESGEPIADLGAFLRSCACTFPLLHGPYGEDGTIQGLFEVFDVPYVGSGVLASSL 124 Query: 94 SMDKLRSKLLWQGA--GLPVAPWVALTRA-EFEKGLSDKQLAEISALGLPVIVKPSREGS 150 MDK+ K A +PV P +++ E + + ++ A A G P+ VKP+ +GS Sbjct: 125 CMDKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAAAEAHGFPLFVKPANQGS 184 Query: 151 SVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE------EILPSIRIQ 204 SVG+S+ +L AL LA ++D +V+IEK L E +A+ G+ P I Sbjct: 185 SVGVSRADDLASLDAALDLALRYDAQVVIEKGLDAREIELAVFGDGGPDTVVSPPGEIIL 244 Query: 205 PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDG 264 P G +Y YE KY+ D Y P L A+ A LQ L L+A+ C G R+D +++ D Sbjct: 245 PKGEWYTYETKYVDDVASYAIPVELPAATTARLQELALRAFRATRCSGLARVDFLVERDS 304 Query: 265 -QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + +L E NT PG TS S+ P AG+S+++L+ ++++L Sbjct: 305 LEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVDL 345 >UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces RepID=D1XE41_9ACTO Length = 401 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 116/361 (32%), Positives = 176/361 (48%), Gaps = 60/361 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------DPKEVDVTQL 50 ++AV+ GG S+E +S+ + AV++ L D P+ DP + ++ Sbjct: 34 RVAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAISDR 93 Query: 51 KSMGFQK-------------------------------------VFIALHGRGGEDGTLQ 73 + + VF LHG GEDGTLQ Sbjct: 94 QVPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGTLQ 153 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE--KGLSDKQL 131 G LEL G+PY G+GV+ASA+ DK K ++ GLPV P+ + E+E + + K++ Sbjct: 154 GFLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARKRI 213 Query: 132 AEISA-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTV 190 E +A G P+ VKP+R GSS+G++KV + L +A+ A +HD + L+E L G E Sbjct: 214 MEFAAEHGWPLFVKPARGGSSMGITKVDDPSGLDEAIEEARRHDPKFLVESLLRGREIEC 273 Query: 191 AILGEEILPSIRIQ---PSGT---FYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 +L E P + P T FYD+EAKY+ D PA L Q A ++ L + A Sbjct: 274 GVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYI-DSAAGLVPAPLTEEQTAEVRRLAVDA 332 Query: 245 WTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + C+G R D L DG F + E NT PG T S+ P +++G+S+ +LV R+++ Sbjct: 333 FEAASCEGLVRADFFLTEDGTFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQA 392 Query: 305 A 305 A Sbjct: 393 A 393 >UniRef50_Q6A5C1 D-alanine--D-alanine ligase B n=4 Tax=Propionibacterium acnes RepID=Q6A5C1_PROAC Length = 327 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 104/308 (33%), Positives = 162/308 (52%), Gaps = 5/308 (1%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M + VL GG S +R++SL SG V LR G + D + L++ VF Sbjct: 13 MLQPVVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFP 72 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GE+G L +L+LMG+PY GS +S DK + AG+ VAL Sbjct: 73 MLHGGLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHD 132 Query: 121 EFEKGLSDKQLAEIS-ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 F + + + I+ GLPVIVKP+R GSS+G++KV + L A+ A+ +D+ V++ Sbjct: 133 VFRELGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVANAYAYDDMVVV 192 Query: 180 EKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+++ G E + ++ G +LP++ I+P G YDY A Y ET+ PA + + Sbjct: 193 EEFIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQ 252 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 A+ L G R+D ++D G+ LEA +PGMT+ SLVP+A + AG+ Sbjct: 253 TATAMARVVQKELDFSGISRVDAIVDESGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLG 312 Query: 296 QLVVRILE 303 ++ R+++ Sbjct: 313 EVCSRLVD 320 >UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteobacteria RepID=DDL_BLOPB Length = 368 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 106/341 (31%), Positives = 166/341 (48%), Gaps = 44/341 (12%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP--VDPK------EVDVTQLKS---- 52 I ++ GG S E E+SL S + + + +A +D K ++D L Sbjct: 6 IGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKDIDFNDLSYHKDE 65 Query: 53 -----------------------MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 + F +F +HG GEDG LQG+L +M LP+ GS V+ Sbjct: 66 KISILLQNCPYPFKFHTKNINILLKFDVIFPVVHGTLGEDGALQGLLCMMNLPFVGSNVL 125 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 +S++ MDK SK L + AGL V P+ + A+ + + +S GLP+ VKPS +G Sbjct: 126 SSSVGMDKDVSKCLLRDAGLSVVPFRTVL-AQDQHNIDFDYF--VSIFGLPLFVKPSNQG 182 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR-----IQ 204 SS+G+SKV AL AF ++LIE + G E A+LG + P I I Sbjct: 183 SSIGVSKVTKCKDFNLALIKAFSFSNKILIEPAIIGRELECAVLGNDN-PKISVCGEVIL 241 Query: 205 PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDG 264 FY Y KY+ + Q PA + + +++ + L+A+ L C G R+DV L+ D Sbjct: 242 SDNNFYTYHDKYVKRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMARVDVFLNLDN 301 Query: 265 QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + ++ E NT PG T S+ P +G++ +L+ +++ELA Sbjct: 302 KIFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELA 342 >UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT57_9BACT Length = 331 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 104/324 (32%), Positives = 165/324 (50%), Gaps = 29/324 (8%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGID-------------------AYPVDPKE 44 IA++ GG S+ERE++L S A + + L D + VD + Sbjct: 5 NIALMAGGDSSEREIALQSAAQIASALDPAKYDITLIDLHGRDWHYTSPDGRQWQVDKND 64 Query: 45 VDVT-QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLL 103 +T + F I +HG GE+G LQG L++MG+PY+ + +S ++ DK+ +K Sbjct: 65 FSITIDGEHKAFDYALILIHGTPGENGRLQGYLDMMGIPYSSCSMTSSVVTFDKITTKRT 124 Query: 104 WQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENAL 163 G+P+A R + + K++ + LGLPV VKP+ GSS G++KV +E + Sbjct: 125 VAEFGIPLARGFFFGR---DSRIDPKEI--VRTLGLPVFVKPNASGSSFGVTKVKSEADI 179 Query: 164 QDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSD 219 A+ AF +E+LIE+ + G E +L E I P I F+DYEAKY + Sbjct: 180 LPAVAEAFTESDEILIEECIQGREMGCGMLIAKGREYIFPITEIVSKKEFFDYEAKYTAG 239 Query: 220 ETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTS 279 + PA + +A L L A+ C+G R+D ++ +G+ YL+E N+ PGM+ Sbjct: 240 CSDEITPADIAPEIKAELNRLTALAYKACRCRGVVRVDFIVTPEGKPYLIEINSIPGMSG 299 Query: 280 HSLVPMAARQAGMSFSQLVVRILE 303 S+VP R+AGM+ +L I+E Sbjct: 300 GSIVPKQVREAGMTLGELYDLIIE 323 >UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 Tax=Enterococcus RepID=VANC_ENTGA Length = 343 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 161/340 (47%), Gaps = 40/340 (11%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGL--------------------REGGI-----DAY 38 KIAVL GG S E VSL S A+V+ + +G + D + Sbjct: 3 KIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTW 62 Query: 39 PVDPKEVDVTQLKSMGF---------QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 D K S GF +F LHG+ GEDG +QG+LELM LPY G V Sbjct: 63 LEDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVA 122 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 ASAL M+K L G+ AP + L+R E + D+ + + G P+ +KP+ G Sbjct: 123 ASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQD---HGFPIFIKPNEAG 179 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILP---SIRIQPS 206 SS G++KV + ALQ AL AF + VLI+K ++G E ILG E L I Sbjct: 180 SSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLV 239 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 F+D+E KY PA L + E+ ++ + LG G RID + + G Sbjct: 240 DGFFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQGAI 299 Query: 267 YLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 YL E NT PG T HS P + G+S+ LV +++ LA+ Sbjct: 300 YLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAE 339 >UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B1ZUU9_OPITP Length = 311 Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 112/297 (37%), Positives = 161/297 (54%), Gaps = 14/297 (4%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS-MGFQK--VFIA 61 IAV GGTS+EREVSL SG A A L + ++ V+ ++D L + + Q+ VF Sbjct: 6 IAVFSGGTSSEREVSLGSGQACAAALEK----SFRVERFQIDADALPAGLDPQRHVVFST 61 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG +Q +L+ G+ Y G ++SAL+MDK +K G+ V P V A Sbjct: 62 LHGTFGEDGGMQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAA- 120 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 K +Q+ I G V+VKP+ EGSSVG++ V + L L + + +IE+ Sbjct: 121 --KKPRPEQV--IEQFGERVVVKPNAEGSSVGLNLVGSREELTRVLDVI--QNGRWIIER 174 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E V +L + + I+P YDY +KY T Y PA L+A+ +QA Sbjct: 175 RIFGRELAVGVLNGRAMGVVEIRPKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAA 234 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 A+ GC+ + R+D +L D + YLLE NT PGM SL+PM+AR G+ F+ LV Sbjct: 235 QTAFAACGCRDYARVDFILGDDHELYLLEINTLPGMKETSLLPMSARCEGIDFTALV 291 >UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P076_9BACE Length = 350 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 167/347 (48%), Gaps = 55/347 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGG-----IDAY----------------PVDP 42 KI VL GG S ER VSL++G V L G +D Y P+ Sbjct: 2 KIVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPISE 61 Query: 43 KEVDVTQ------------------------LKSMGFQK-VFIALHGRGGEDGTLQGMLE 77 + V++ L+ G VF+ALHG GEDG +Q + Sbjct: 62 EHKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAFD 121 Query: 78 LMGLPYTGSGVMASALSMDK-LRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 LMG+PYTGSG + SA++MDK L +++ P V+ T + + GL + Sbjct: 122 LMGIPYTGSGYLGSAIAMDKDLTKRMVADVVSTPGWKTVSYTADDID-GL-------VET 173 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE 196 LP++VKP GSS+G+S L+ AL ++E+++ G E VAIL ++ Sbjct: 174 ARLPLVVKPVASGSSIGVSIAHTAEELRTALTEGLALGGRTVLEQYVKGRELQVAILEDK 233 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 LPSI I P FYDYE KY + CPA + E L+ ++ + TLG + R Sbjct: 234 ALPSIEIIPKQGFYDYENKYQPGAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSRA 293 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 D +LD+DG+ + LE NT PGMT SLVP A G+ ++ L RI++ Sbjct: 294 DFILDADGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVD 340 >UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R6P1_9CHLA Length = 788 Score = 166 bits (421), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 111/323 (34%), Positives = 155/323 (47%), Gaps = 23/323 (7%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------------DPKEVDVTQ 49 I +L GG S E EVSL S + L + + D +E ++ Sbjct: 454 HIGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNEGDSEEFLISS 513 Query: 50 LKSMGFQK---VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQG 106 QK +F LHG GEDGT+QG LE++G PY G +SA+ MDK +K L Q Sbjct: 514 QVLQQLQKCDLLFPILHGTFGEDGTIQGFLEILGKPYVGCDHQSSAICMDKAIAKRLMQH 573 Query: 107 AGLPVAPWVALTRAEFEKGLSDKQLAEI-SALGLPVIVKPSREGSSVGMSKVVAENALQD 165 AG+ + ++A + +++ D L EI L P+ VKP GSS+G+ +V E L Sbjct: 574 AGIQTSSFIAFSETDWKNRAKD-LLHEIREKLIFPIFVKPVHLGSSIGVQRVTNETELDA 632 Query: 166 ALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQ 222 A+R AF D +L+E ++G E A+LG + +LP + +G +DY KY D Sbjct: 633 AIRNAFAFDPVILVENEIAGREIEFAVLGNDQITVLPPGEVFSAGKIHDYRGKYSRDNAT 692 Query: 223 YFCP-AGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHS 281 P A L +A+ LKA+ CKG RID LD G F+ E N PG T S Sbjct: 693 PSTPQADLPEKWMEEGKAIALKAYQAATCKGMARIDFFLDQSGSFWFNEINPIPGFTPFS 752 Query: 282 LVPMAARQAGMSFSQLVVRILEL 304 L P G S +L+ R+L L Sbjct: 753 LYPQMCEANGFSNEELIDRLLIL 775 >UniRef50_B1JC77 D-alanine--D-alanine ligase n=2 Tax=Pseudomonas putida RepID=B1JC77_PSEPW Length = 304 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 164/304 (53%), Gaps = 16/304 (5%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI--DAYPV-DPKEVDVTQLKSMGFQK 57 M + IA++ GG S+EREVSL + AV L I + + + D +E+ +L F + Sbjct: 1 MNEYIAIITGGDSSEREVSLQTSQAVSQSLEISQIRHEIFTISDYREL--LRLDLAKFTR 58 Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 VF+ALHG GE+G Q LE G+PY G SA+ M+KL +K + G G+ VA ++ Sbjct: 59 VFLALHGGFGENGMAQAYLEGQGIPYNGPSPQTSAICMNKLLTKHIAMGLGINVANYLYS 118 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVV-AENALQDALRLAFQHDEE 176 R + L +++ E LG P IVKP+REG S G+S V E LQDA+ A Q Sbjct: 119 RRGD---DLCVEKINE--QLGTPCIVKPNREGCSFGVSLVRDLETDLQDAINAAAQFHTG 173 Query: 177 VLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQ-YFCPAGLEASQEA 235 VL+E+++SGPE +V + LP + F+ YEAK++S +T Q+ Sbjct: 174 VLVEEFISGPELSVCYFNKATLPIYSLAFESEFFSYEAKFISSKTTATLTTLDRTTHQQL 233 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 N + L + R D ++ + + YL+E NT PG+TSHSL P A +Q G+ F Sbjct: 234 NNYCFAIAEALEL---DYFRADFIIH-NTEPYLIELNTLPGLTSHSLFPKACQQHGIEFD 289 Query: 296 QLVV 299 +LV+ Sbjct: 290 KLVL 293 >UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycetales RepID=DDL_MYCUA Length = 373 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/262 (37%), Positives = 146/262 (55%), Gaps = 23/262 (8%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 VF LHG GEDGT+QG+LEL G+PY G+GV+ASA MDK +K LW AGLP+ P L Sbjct: 113 VFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVL 172 Query: 118 --TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE 175 +R ++ E+ LGLP VKP+R GSS+G+S+V + + L A+ A +HD Sbjct: 173 RPSRQSLDR-------EELQRLGLPAYVKPARGGSSIGVSRVSSFDELPAAIAAARRHDP 225 Query: 176 EVLIEKWLSGPEFTVAI------------LGEEILPSIRIQPSGTFYDYEAKYLSDETQY 223 +V++E ++G E + LGE + +R + G FYD+E KYL D + Sbjct: 226 KVIVEAAINGRELECGVLEFPDGRLEASTLGEIRVAGVRGREDG-FYDFETKYLDDAAEL 284 Query: 224 FCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLV 283 PA +E ++ L ++A+ + C+G R+D L DG + E NT PG T+ S+ Sbjct: 285 DVPAKVEDDVADAVRQLAIRAFEAIDCQGLARVDFFLTDDGPV-INELNTMPGFTTISMY 343 Query: 284 PMAARQAGMSFSQLVVRILELA 305 P +G+ + L+ ++E A Sbjct: 344 PRMWVASGVDYPTLLATMVETA 365 >UniRef50_UPI0001AF4ABE D-alanine--D-alanine ligase n=1 Tax=Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191 RepID=UPI0001AF4ABE Length = 301 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 162/305 (53%), Gaps = 14/305 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+ VL GG S ER++S+ +G A A L++ G DAY +D +L+ + F ALH Sbjct: 3 KVLVLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDRTLPEKLRQINPDVCFNALH 62 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG++QG+L +MG+PYT SGV AS+++MDK+++K + G+ +A E Sbjct: 63 GPYGEDGSVQGLLNIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIA----------E 112 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 L D + + P ++KP +GSS+ +A + A+ ++ ++E+++ Sbjct: 113 DQLIDYATYKSMEIPFPYVLKPVNDGSSIATYIFNTPDA-EKLSEQAWIYNTHAMMERYI 171 Query: 184 SGPEFTVAILGEEILPSIRIQPS--GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 G E TV + + + I PS FY++ AKY + + + PA + Sbjct: 172 KGRELTVTVFMNKPVTVTEIIPSTDHQFYNFHAKYDTGGSLHSLPADIPDKAFNICMENA 231 Query: 242 LKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L LGC+G R D +L+ + G + LE NT PGMT SLVP AG+SF+QLV Sbjct: 232 LAMHILLGCRGISRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVSL 291 Query: 301 ILELA 305 +++ A Sbjct: 292 LVDEA 296 >UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9U3_BLASP Length = 331 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/319 (31%), Positives = 164/319 (51%), Gaps = 32/319 (10%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGL-------------------REGGIDAYPVDPKE 44 KIA+++GG + E +SL SG V L ++ YPV+ ++ Sbjct: 3 KIAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIEKWILKDKNNKEYPVNKQD 62 Query: 45 --VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL 102 V +T + + F VF A+HG GEDG LQ L+ +PYTG ++++ +K Sbjct: 63 FTVRITNDQILKFDCVFNAIHGTPGEDGVLQAYFHLLKIPYTGCHFHHASVTFNKKYCLT 122 Query: 103 LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA 162 + G+ AP L + + +K++ + +GLP VKP+R GSS+G+SKV E Sbjct: 123 FLKEFGIKTAPSFFLNKNQ---SFCEKKI--LKKVGLPCFVKPNRSGSSLGISKVYQERE 177 Query: 163 LQDALRLAFQHDEEVLIEKWLSGPEFTVAILG----EEILPSIRIQPSGTFYDYEAKYLS 218 L A+ AF+ D+E+++E +L G E +V ++ ++LP I F+D+E+KY S Sbjct: 178 LAKAIEHAFRKDQEIIVESFLKGTEVSVGVISWNQDIKVLPITEIISRNDFFDFESKY-S 236 Query: 219 DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMT 278 ++Q PA L S E ++ L + L G R + +L +G + LE NT PG++ Sbjct: 237 GKSQEITPARLLPSLEKKIKKLAKNVYEILNLSGISRSEYIL-VNGDPFFLEINTIPGLS 295 Query: 279 SHSLVPMAARQAGMSFSQL 297 S++P + AG+S S+L Sbjct: 296 EESILPKQLKIAGISLSEL 314 >UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9PTP4_9BACT Length = 392 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/328 (31%), Positives = 166/328 (50%), Gaps = 32/328 (9%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD----------------- 46 IA++ GG S+E EVSL S + + + + Y VD + ++ Sbjct: 66 NIAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERAIIDKND 125 Query: 47 ---VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLL 103 V + + + F +I +HG GE+G +QG EL+ +PY+ SGV+ AL+ DK Sbjct: 126 FSFVHEGEQVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNY 185 Query: 104 WQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENAL 163 +G G+ VA + + R E E G+ ++ + + LG+P VKP+ +GSS G+SKV + L Sbjct: 186 LRGFGVNVANSILVRRGE-EFGIDERAVE--AQLGMPCFVKPAADGSSFGVSKVKNIDQL 242 Query: 164 QDALRLAFQHDEEVLIEKWLSGPEFTVA---ILGE-EILPSIRIQPSGTFYDYEAKYLSD 219 ALR A D+ +IE +L G E +V + GE ++LP+ + F+DY+AKY + Sbjct: 243 APALRKALMEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEVVSHNEFFDYDAKY-NG 301 Query: 220 ETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML----DSDGQFYLLEANTSP 275 + + PA + + + + L C G RID +L D + L+E NT+P Sbjct: 302 QVEEITPARIADETARRVAEETARIYEILNCNGIIRIDYILTKEPDGTDKINLIEVNTTP 361 Query: 276 GMTSHSLVPMAARQAGMSFSQLVVRILE 303 GMT S +P R AGM ++ I+E Sbjct: 362 GMTPTSFIPQQVRAAGMEMKDVLSEIVE 389 >UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostocaceae RepID=DDL_OENOB Length = 377 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/319 (31%), Positives = 178/319 (55%), Gaps = 27/319 (8%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-PVDPKEVDVTQLKSMGFQKVF 59 + K +++ +++R + +LAGL D + P+D ++++ +F Sbjct: 43 LISKKGIMIDSETSKRVLFGEDEDELLAGLPNKNADIFGPID-------SIRNLKLDVLF 95 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 ++HG GEDGTL G+ LM +PY GSG+ A A+S DK+ +K L G+ ++ + + Sbjct: 96 PSVHGNLGEDGTLAGLFRLMNIPYVGSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFQ 155 Query: 120 AEFEKGLSD---KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 + K D KQL E+ V VK + +GSSVG+S+V ++ALR +FQ+DE+ Sbjct: 156 NDKNKPDWDSVSKQLGEV------VFVKAANQGSSVGVSRVTNAEEYENALRDSFQYDEK 209 Query: 177 VLIEKWLSGP-EFTVAILGEEILPSIRI-------QPSGT-FYDYEAKYLSD-ETQYFCP 226 +L+EK + P E + +LG + + + I Q G+ ++DY+ K++ + + +Y P Sbjct: 210 LLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPGQDHGSGWFDYKNKFVDNSKMKYQIP 269 Query: 227 AGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMA 286 A + ++ L+ + +KA+ LG KG+ RID ++ DG+ +L E NT PG T+ SL P+ Sbjct: 270 AKISPAKSKELENMAVKAYKVLGIKGFARIDFLMSKDGEIFLSEPNTLPGNTNMSLFPIL 329 Query: 287 ARQAGMSFSQLVVRILELA 305 AGM+ SQ ++++LA Sbjct: 330 FEAAGMNRSQQAEKLIQLA 348 >UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID=C7H403_9FIRM Length = 365 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 141/263 (53%), Gaps = 8/263 (3%) Query: 49 QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAG 108 Q++ + V ALHG GEDGT+QG+LEL G+PY G GV+ASA+ MDK + L+ AG Sbjct: 96 QVEKLHVDVVIPALHGLWGEDGTVQGLLELAGIPYVGCGVLASAVCMDKAVANALFDAAG 155 Query: 109 LPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALR 168 +P W++ R E E L I+ LG P+ VKP+ GSSVG++K + L+ A+ Sbjct: 156 IPHTKWLSACRWEIESDLDGVCDGAIAKLGWPIFVKPANAGSSVGITKAHDRDELKQAIA 215 Query: 169 LAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQP-----SGTFYDYEAKYLSDETQY 223 LA ++D +V+ E ++ G E A++G + P++ +P FY Y+ KY + +Q Sbjct: 216 LALENDHKVVFEAFVDGHEVECAVIGSD--PAVATRPGEILAGAEFYTYDDKYKNGVSQV 273 Query: 224 FCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLL-EANTSPGMTSHSL 282 PA L + ++ A+T L C+G R D ++ ++ E NT PG T S+ Sbjct: 274 VIPARLSEEKLDEVKTYAAMAYTALNCEGLARCDFFVEHGTDRVMINEINTFPGFTPISM 333 Query: 283 VPMAARQAGMSFSQLVVRILELA 305 P G L+ ++ELA Sbjct: 334 YPKLMEHEGTPVPALIDHLIELA 356 >UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLF9_9FIRM Length = 357 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/341 (30%), Positives = 173/341 (50%), Gaps = 40/341 (11%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------------DPKE 44 + +L GG S E E+S+ + +V+ L +P+ + KE Sbjct: 3 NLYLLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTKNIENEKE 62 Query: 45 V------DVTQLKSMGFQKVFI--------ALHGRGGEDGTLQGMLELMGLPYTGSGVMA 90 + +V S F K F+ A+HG EDGT+QG ++M L Y G+ V++ Sbjct: 63 LVVEGFGNVADSISNFFAKDFVNENAIFFPAMHGTFSEDGTIQGFFDIMDLTYVGNNVLS 122 Query: 91 SALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI-SALGLPVIVKPSREG 149 SA+ MDK + ++ G G+ + +T+ EF K D Q+ I +G +KP G Sbjct: 123 SAVCMDKGTANDVFAGNGILQPEYYLVTKYEFNKN-KDLQIKNILEKIGEVSFIKPCNAG 181 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR---IQPS 206 SSVG++KV + ++ AL AF++D VL+E+ + G E V ++G IL + ++ + Sbjct: 182 SSVGVTKVTKKEEIEPALIEAFKYDNRVLVEEAVIGDELQVLVMGNNILKASLPGGVKVT 241 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML-DSDGQ 265 F+DYEAKY + T + P L + +Q++ +A+ CKG+ R+D+ + DSD + Sbjct: 242 REFFDYEAKYFDETTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFARVDIFVRDSDRK 301 Query: 266 FYLLEANTSPGMTSHSLVP-MAARQAGMSFSQLVVRILELA 305 + E NT PGMT+ S+ P M + ++S + ++ELA Sbjct: 302 MLVNEINTIPGMTAVSMAPAMYMKTFKKTYSDFLDELIELA 342 >UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M645_SALAI Length = 360 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 120/326 (36%), Positives = 164/326 (50%), Gaps = 45/326 (13%) Query: 7 VLLGGTSAE--------REVSLNSGAAVL--AGLREGGIDAYPVDPKE-------VDVTQ 49 VL GG S++ EV+ SG AV+ A GG+ +DP E VDV Sbjct: 45 VLTGGDSSQLAITDRRLPEVTAESGTAVVLNADPSSGGL--LVLDPAEGSRALADVDV-- 100 Query: 50 LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGL 109 VF LHG GEDGT+QGMLE+ G+PY G+ V ASA +MDK +K L G+ Sbjct: 101 --------VFPVLHGAYGEDGTIQGMLEMAGIPYVGANVFASAAAMDKEFTKKLCAAEGI 152 Query: 110 PVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRL 169 PV P+ A+ R+ DKQ LGLPV VKPSR GSS G+++V L DA+ Sbjct: 153 PVGPY-AVLRSGMTLTEQDKQ-----RLGLPVFVKPSRAGSSFGITRVTDWADLDDAVAN 206 Query: 170 AFQHDEEVLIEKWLSGPEFTVAILGEE--------ILPSIRIQPSGTFYDYEAKYLSDE- 220 A + D +VL+E + G E +L E L +R+ FYD+EAKY+ + Sbjct: 207 ARKIDPKVLVESAVIGREIECGVLEAEAGGVPEASALAEVRVVGDYDFYDFEAKYIDADA 266 Query: 221 -TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTS 279 +Y PA L +Q ++A+T L C G R D + + YL E NT PG T Sbjct: 267 ACEYDIPADLPERVTRQVQEYAVRAFTALDCAGLARADFFVTPELDVYLNEVNTMPGFTP 326 Query: 280 HSLVPMAARQAGMSFSQLVVRILELA 305 S+ P +G+ + +LV R++ A Sbjct: 327 TSMFPRMWAASGLEYQKLVNRLIRTA 352 >UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS02_SYNAS Length = 352 Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 114/339 (33%), Positives = 172/339 (50%), Gaps = 40/339 (11%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-----------------DPKEVD 46 K+ ++LGG S+EREVSLNSG V L + PV D Sbjct: 6 KVGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQNTTRD 65 Query: 47 VTQL-----KSMGFQKV-------FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALS 94 +T+ + + ++ + FI+LHG+ G+DG +QG+LEL+ +PYTG GVMASAL Sbjct: 66 ITERLKGEARRIAYEDLKKEIDFAFISLHGKYGDDGCIQGLLELLRIPYTGPGVMASALG 125 Query: 95 MDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL---GLPVIVKPSREGSS 151 MDK + + + AG+ V P L R E+ D Q+ + G P KP REGSS Sbjct: 126 MDKHLQQKILRAAGVAV-PESLLVRE--EEWRQDSQIVKDRVKEFPGYPCFTKPIREGSS 182 Query: 152 VGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSG 207 VG++ V E L+ + A + D VL+E++L G EF+ +L EE L I P Sbjct: 183 VGVTVVRDEADLERGMEDALKWDRAVLVEEYLEGREFSCIVLEEEGQFHPLELTEIHPQS 242 Query: 208 TFYDYEAKYLSDETQYFCPAG-LEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 F+ Y+ KY+ + F P + ++A V++A+ LG + +GRID + +DG+ Sbjct: 243 EFFTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFILNDGRI 302 Query: 267 YLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + + N+S GM S A AGM S ++ ++E A Sbjct: 303 LITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENA 341 >UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermothrix orenii H 168 RepID=DDL_HALOH Length = 343 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 109/337 (32%), Positives = 170/337 (50%), Gaps = 37/337 (10%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP---------VDPKEV------DVT 48 ++ VL GG S E EVS+ S +V+ ++ P V P+E + Sbjct: 5 RLGVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILNNGIN 64 Query: 49 QLKS---------------MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASAL 93 ++K+ VF LHG GEDG LQG L+ + +PY G+ V++SA Sbjct: 65 EVKASKDRCITESVRVFLDHKLDIVFPVLHGPYGEDGKLQGFLDCLDIPYIGASVLSSAA 124 Query: 94 SMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA-LGLPVIVKPSREGSSV 152 MDK K L+ +P A + + E GL D ++EI LG P VKP+ GSS+ Sbjct: 125 GMDKEIMKNLFSYHKIPQARYRVYRQNHLENGL-DGIISEIDRFLGWPCFVKPANMGSSI 183 Query: 153 GMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG----EEILPSIRIQPSGT 208 G+SKV + ++ AL F +D +++ E+++ G E ++LG E LP I P Sbjct: 184 GVSKVHSPGEVKKALEKGFYYDRKLIFEEFVEGREIECSVLGNDQVEASLPG-EILPGKE 242 Query: 209 FYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYL 268 FYDYEAKY ++T+ PA L+ S + L +KA+ + G+ R+D L ++G + Sbjct: 243 FYDYEAKYKDNKTRLVIPASLDESVIDKARNLAIKAFKAIDGNGFARVDFFLKNNGVLLV 302 Query: 269 LEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 E NT PG T +S+ P G+++ L+ +++ELA Sbjct: 303 NEINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIELA 339 >UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified Erysipelotrichaceae RepID=Q6JH79_CLOIN Length = 355 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 106/351 (30%), Positives = 179/351 (50%), Gaps = 52/351 (14%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGL-------------REGGIDAYP--VDPKEVDVT 48 K+A++LGG S E VSL+S +++ + ++G AY VD E D Sbjct: 5 KLAIILGGKSDEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYSGDVDGIEHDTW 64 Query: 49 QLKSM-------------GFQK--------------VFIALHGRGGEDGTLQGMLELMGL 81 ++ GF K +F LHG+ GEDGT+Q + EL G+ Sbjct: 65 LCEAHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQTLFELSGI 124 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS--ALGL 139 PY G G M A+ MDK + ++ + AG+ AP+V + A+ L +++ E + LGL Sbjct: 125 PYVGCGHMRFAICMDKEMAHIVMEHAGISCAPFVCVYEAD---DLDYRKVYEHAKETLGL 181 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE--VLIEKWLSGPEFTVAILGEEI 197 P+ +KP+ GSS G+ ++ + + ++A++ AF HD + V++E + G E VA++G + Sbjct: 182 PIFIKPANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKE 241 Query: 198 LPS---IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 L + I+ + F+DYE KY ++ +CPA + + + KA+ + CKG Sbjct: 242 LFAGSVDEIETAAPFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMT 301 Query: 255 RIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D+ + + L E NT PG T S P ++AG+ F +L+ +++ LA Sbjct: 302 RVDMFVTPEDTIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352 >UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia RepID=DDL_WOLTR Length = 339 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 110/322 (34%), Positives = 165/322 (51%), Gaps = 28/322 (8%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M I +L GG S ER++SL SG AV L +A +D +LK + FI Sbjct: 15 MVLTITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFI 74 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GEDG +QG+LE++G+ YT SGVMASA++M+K SK +++ G+ ++R Sbjct: 75 ALHGPYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRG 134 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN---ALQDALRLAFQHD--- 174 + L + P ++KP EGSS+G+ + L++ + HD Sbjct: 135 DI--------LKNNIKIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGI 186 Query: 175 EE----------VLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYF 224 EE ++IE+++ G E A+L +E ++ I+P FYDY+AKY + ++ Sbjct: 187 EEEEPVWITRDLMIIEEYIPGIELHTAVLLDEAAGTMEIRPKNKFYDYKAKYTNGFAEHI 246 Query: 225 CPAGL-EASQEANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSL 282 PA + + E L+ LK LGCK R D + D +LE NT PG T SL Sbjct: 247 FPAEIPDNIYEMTLEH-ALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSL 305 Query: 283 VPMAAR-QAGMSFSQLVVRILE 303 VP A+ G+ F++LV I+E Sbjct: 306 VPEIAKLTKGIDFNELVKIIIE 327 >UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCDC65 Length = 356 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 176/340 (51%), Gaps = 42/340 (12%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----DPKEVDVTQ---------- 49 ++AV+ GG S+E VS + VLA L D P+ D V+ T Sbjct: 13 RLAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPGTL 72 Query: 50 --LKSMG----------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK 97 +++ G F VF LHG GEDGT+QG+LE+ + Y G+GV+ASA+SMDK Sbjct: 73 PAVRADGPVFAWERLAEFDAVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSMDK 132 Query: 98 LRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKV 157 +K ++ AGLP P+V + E+ + S + A I ALGLPV VKP+R GSS G++ V Sbjct: 133 PFTKTVFSAAGLPQIPYVTIRPWEWNRERSRVE-ARIRALGLPVFVKPARAGSSSGVAMV 191 Query: 158 VAENALQDALRLAFQHDEEVLIEKW-----------LSGPE-FTVAILGEEILPSIRIQP 205 + + L A+ A D +V++E + L GP+ VA + EI ++ + Sbjct: 192 ESWDDLDAAVVAARAFDPKVIVEAFARGKRELECGVLQGPDGRPVASVVGEI--TVAAES 249 Query: 206 SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ 265 FYD+EAKYL + PA + + ++ ++A+ +GC+G R+D L DG Sbjct: 250 DHDFYDFEAKYLDGTSVNLVPADIPVTLSERIRTYAVQAFEAVGCEGLARVDFFLTDDG- 308 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + E NT PG T S+ P+ +G+ + LV R++ LA Sbjct: 309 LVVNEINTMPGFTPFSMFPLLWEASGVRYEDLVDRLVRLA 348 >UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacillales RepID=DDL_LACLM Length = 349 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 109/343 (31%), Positives = 170/343 (49%), Gaps = 49/343 (14%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLR------------EGG----IDAYPVDPKEVD 46 + + +L GG SAEREVS+ S +V+ + +GG + P E + Sbjct: 4 ETLILLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDRPAEEE 63 Query: 47 VTQLKSMG-----------FQK---VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 + ++K VF LHG GEDG++QG LE++ L Y G +++++ Sbjct: 64 KLLTNDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSAS 123 Query: 93 LSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS-----ALGLPVIVKPSR 147 +MDKL +K +++ G+P P+VA +D+ EI+ L PV VKP+ Sbjct: 124 STMDKLLAKHVFEAVGVPQVPYVA--------AFADENQVEIAQEVVEKLDFPVFVKPAN 175 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-----ILPSIR 202 GSSVG+SKV LQ AL A+++D V+IE+ + E A+LG LP Sbjct: 176 MGSSVGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEV 235 Query: 203 IQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 ++ G FYDY +KY+ ++ Q PA + A +Q KA+ + G R D + Sbjct: 236 VKDVG-FYDYNSKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVTK 294 Query: 263 DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 DG YL E N PG T S+ P+ G+S+S L+ ++++LA Sbjct: 295 DGNVYLNEVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=DDL_COPPD Length = 304 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/302 (35%), Positives = 160/302 (52%), Gaps = 14/302 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIAL 62 I VL GGTS ERE+SL SG + A LR G +D + V QL + VF AL Sbjct: 2 NIVVLFGGTSPEREISLKSGENIAATLRARGHQVETLDTAVPNFVEQLMQLKPDCVFPAL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDG +QG+L ++ +PY GS V AS ++MDK +KL+ +G+P ++ + Sbjct: 62 HGADGEDGKIQGLLSILHIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDPHL 121 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 D + LG P IVKP GS++G+S V + + + AL AF+ + +L+E++ Sbjct: 122 VPDYWDVE----RKLGSPFIVKPCDVGSTIGLSLVRSASEYEVALEEAFRFSDRLLLEEF 177 Query: 183 LSGPEFTVAI--LGEE--ILPSIRIQPSGTFYDYEAKYLSDETQ--YFCPAGLEASQEAN 236 + G E TV + LG + +LP I + +DY+ KY + Y P +EA + Sbjct: 178 IDGFEVTVGLFRLGGDFLVLPPIYVVKPDRIFDYDTKYKPGGAKHVYDLPISVEARE--R 235 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 L + + +G G R+D ++ D YLLE N+ PGMT+ SLVP R AG F + Sbjct: 236 LTSYSKRICKIVGIGGVARLDYIV-KDETPYLLEINSIPGMTAESLVPDEVRHAGRDFGE 294 Query: 297 LV 298 + Sbjct: 295 FL 296 >UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycetales RepID=DDL_STRGG Length = 391 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 115/361 (31%), Positives = 176/361 (48%), Gaps = 60/361 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV---------------------DP 42 ++AV+ GG S+E +S+ + AV+ + D P+ D Sbjct: 24 RVAVVFGGRSSEHGISVVTAGAVMRAIDRTTYDVLPIGITTDGRWALTADEPERMAITDR 83 Query: 43 KEVDVTQL----------------------------KSMG-FQKVFIALHGRGGEDGTLQ 73 K DV +L K++G VF LHG GEDGTLQ Sbjct: 84 KVPDVDRLTESAEGSVVLSVDPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGTLQ 143 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK--GLSDKQL 131 G+LEL G+PY G+GV+ASA+ DK K ++ GLPV P+ + E++ + +++ Sbjct: 144 GLLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYEVVRPREWDNDPAAARERI 203 Query: 132 AEISA-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTV 190 + + G P+ +KP+R GSS+G++KV + L A+ A +HD + L+E L G E Sbjct: 204 VDFAGEHGWPLFIKPARGGSSMGITKVDSVEGLDAAIEEARRHDPKFLVESLLRGREIEC 263 Query: 191 AILGEEILP----SIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 +L E P I P S FYD+EAKY+ D PA L Q A ++ L + A Sbjct: 264 GVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYI-DSAAGLVPAPLTEEQTAEVRRLAVAA 322 Query: 245 WTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + + C+G R D L DG F + E NT PG T S+ P +++G+ + +LV R+++ Sbjct: 323 FDAVSCEGLVRADFFLTEDGTFVINEINTLPGFTPISMYPRMWQESGVDYPELVDRLIQA 382 Query: 305 A 305 A Sbjct: 383 A 383 >UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho africanus TCF52B RepID=DDL_THEAB Length = 367 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/346 (26%), Positives = 169/346 (48%), Gaps = 52/346 (15%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------------ 40 + +L G S E E+S+ + VL+ + + + P+ Sbjct: 4 VGLLFGSKSVEHEISIITAHQVLSFVDKNKYNIIPIYITKDGKWLTGKILEDLENFKNLE 63 Query: 41 ---------------DPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTG 85 D K + + +K + + HG GEDG++QGMLE + +PYTG Sbjct: 64 RLEKKSKQISSISAKDGKLILHSNIKKITIDVCLLTFHGSNGEDGSIQGMLEFLNVPYTG 123 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKP 145 G+ +S +MDK+ +KL+ + +PV ++ + + + E+ L P+IVKP Sbjct: 124 CGMYSSMYTMDKVITKLILKEKNIPVVDFLYTNKKNYTNDFLN-HCKEV--LEYPMIVKP 180 Query: 146 SREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE--ILPSI-R 202 +R GSS+G+ KV + L++A+ AF D++V++EKW+ E A++G + ++ I Sbjct: 181 ARLGSSIGVKKVNDKCELEEAIETAFSFDDKVIVEKWIDSRELNCAVMGYKNIVVSEIEE 240 Query: 203 IQPSGTFYDYEAKYL---SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 I+ F+DY KY+ + + PA ++ + + ++++ + L C G RID + Sbjct: 241 IKKQKDFFDYNEKYVQKGKKFSNHIIPAPIDENLKNTIKSIARDTFNALECHGNIRIDFL 300 Query: 260 LDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L D + Y+ E N+ PG S+ L M +G +FSQ++ ++ +A Sbjct: 301 LSKDNKIYVNEVNSIPGALSYYLWQM----SGFTFSQVIDNMISIA 342 >UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M114_BACS4 Length = 326 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 96/253 (37%), Positives = 142/253 (56%), Gaps = 9/253 (3%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 +F LHG GEDG++QG+L LMG P+ G V+ SA+SMDK SK L AGL + + A Sbjct: 64 IFPILHGSYGEDGSIQGLLRLMGKPFIGPSVLGSAVSMDKEVSKKLLSEAGLFIGKYFAY 123 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 T+ KG D + + LG PV VKP+ +GSSVG+SKV + A+ AF++D ++ Sbjct: 124 TKD--RKGNIDYEKVK-ENLGTPVFVKPANQGSSVGISKVYEKKKFYMAVDEAFRYDNKI 180 Query: 178 LIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEAS 232 +IE+ + G E A+LG E LP + + +FY Y+AKY+ S Q PA L+ Sbjct: 181 VIEEEIKGREIECAVLGNEDPIASLPG-EVLFTDSFYSYDAKYINSGGVQLKVPAELDGD 239 Query: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGM 292 ++ +KA+ L C G R+D L +G ++ E NT PG T S+ P +G+ Sbjct: 240 DVEKVKKEAIKAFKALQCNGVARVDFFLTKEGNLFVNEINTLPGFTKLSMYPKLWEVSGL 299 Query: 293 SFSQLVVRILELA 305 + LV +++ LA Sbjct: 300 PYKDLVNKMIALA 312 >UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=A9WQG6_RENSM Length = 365 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 121/332 (36%), Positives = 174/332 (52%), Gaps = 38/332 (11%) Query: 5 IAVLLGGTSAEREVSLNS-----GAAVLAGLREGGIDAYPVDPK---EVDVTQLKSMGFQ 56 IAV+ GG S+E +VSL S AA G R + + +D VD + ++ Sbjct: 36 IAVIGGGVSSEHDVSLASSEGTRAAAAALGHR---VHFFLIDSDGEWSVDGVPGTTAAWE 92 Query: 57 KV------FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLP 110 K+ +HG GGEDG LQG LE +G+ Y GSGV++SA+ +DK +KL+ G+ Sbjct: 93 KLRSCDLAIPMVHGAGGEDGVLQGFLETVGVSYFGSGVLSSAVGLDKQVTKLVAHTVGVR 152 Query: 111 VAPWVALTRAEFEKGLSD-----KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQD 165 AP + + A L++ + L + + + LPV VKP R GSS G+SKV + L D Sbjct: 153 TAPGLTID-ATLRDQLAETPDQAENLLKSAKIELPVFVKPLRGGSSFGISKVTEQLNLAD 211 Query: 166 ALRLAFQH--DEEVLIEKWLSGPEFTVAILGEEILP--SIRIQPS--------GTFYDYE 213 A++LA +++VLIE + G E V +L LP S+ + P F+ E Sbjct: 212 AVKLAAHGPVEQDVLIEPEVRGKEVDVGVLE---LPDCSVIVGPCLQVLADSKEEFFSTE 268 Query: 214 AKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANT 273 AKY S ET++ PA + A ++A +T LGC+G R+D +D DG L E NT Sbjct: 269 AKYSSTETRFLVPAPIGDEASAAIRAQAKAVFTALGCRGLARVDFFVDDDGTATLNEINT 328 Query: 274 SPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 PG TSHS VP AG+++ LV I+E A Sbjct: 329 LPGFTSHSQVPRIWAAAGVNYEGLVAIIIETA 360 >UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJ24_FIBSS Length = 344 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 94/250 (37%), Positives = 150/250 (60%), Gaps = 12/250 (4%) Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F+ALHG+ GEDG +Q MLE +PYTG G++ASAL+MDK++SK +++ G+P P+ + Sbjct: 95 FLALHGKWGEDGHIQAMLENWNIPYTGCGLLASALAMDKIKSKEIYRANGIPTPPYRVIW 154 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLA---FQHDE 175 + +F D ++ LG P+++K GSS+G+ +A+N L +A ++A F+ Sbjct: 155 KHDF---TGDTLVSVADELGYPLVIKDPLGGSSIGIG--IAKN-LDEAGKIAQDLFKDSN 208 Query: 176 EVLIEKWLSGPEFTVA-ILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQ 233 +L EK+++G E + I GE+ LP ++ + ++D+EAKY + E Q PA Sbjct: 209 RLLCEKFIAGGEASCGYIEGEKPLPPTEMRMTTREYFDFEAKY-NGECQEVTPAEFAPEL 267 Query: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 A +Q LV A LG G+ R DV + DG+ + +E NT PGMT SL+P A G++ Sbjct: 268 TARIQELVKNAHYALGGAGYSRTDVRITKDGELFAIETNTLPGMTPTSLLPQQAACVGIT 327 Query: 294 FSQLVVRILE 303 +SQL+ I++ Sbjct: 328 YSQLIDLIID 337 >UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiaceae RepID=DDL_CHLP8 Length = 364 Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 157/304 (51%), Gaps = 18/304 (5%) Query: 10 GGTSAEREVSLNSGAAVLAGLREGGIDAY--------PVDP-KEVDVTQLKSMGFQKVFI 60 GG A+R ++L+ AVL LR GG D D K D+T F+ Sbjct: 51 GGACAKRILALD--VAVL--LRNGGQDEVFERLDEITSFDEGKRFDLTAFFD-SIDVAFL 105 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GEDG +QG L+ +PY G G+ +SALSMDK +KL AG+ VA ++++T A Sbjct: 106 TLHGSYGEDGKIQGCLDTFDIPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFMSVTSA 165 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 ++ A PV VKP+ GSSVG+SKV L+ AL A D +VL+E Sbjct: 166 DYAADPQAICNAVTERFAFPVFVKPANLGSSVGISKVHNAAELRPALDKACALDAKVLVE 225 Query: 181 KWLSGPEFTVAILG-EEILPSI--RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 + ++G E VA+LG ++ + S+ I P FYD+E KY+ + + PA L A + Sbjct: 226 ETITGREVEVAVLGNDDPIASVPGEIIPGSDFYDFEDKYVKSDAKLVIPADLPGEVSAAV 285 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 + L + LGC G R+D ++ + L E NT PG T S+ PM +G+ F + Sbjct: 286 RNAALTVFKALGCSGMARVDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSASGVEFDE 345 Query: 297 LVVR 300 L+ R Sbjct: 346 LISR 349 >UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcales RepID=DDL_THEEB Length = 343 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 99/257 (38%), Positives = 139/257 (54%), Gaps = 13/257 (5%) Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F +HG GEDGT+QG+LELM PY GSGV ASA+ MDK+ K ++ GLP P+VAL Sbjct: 85 FPIVHGPNGEDGTIQGLLELMQRPYVGSGVAASAIGMDKILMKTVFGAIGLPQVPYVALQ 144 Query: 119 RAEF------EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ 172 R++ L D+ E LG P VKP+ GSSVG+SK L AL +A + Sbjct: 145 RSDLWSDPCRYNHLCDRIETE---LGYPCFVKPANLGSSVGISKAKNRQQLTTALEVAAE 201 Query: 173 HDEEVLIEKWLSGPEFTVAILGEEILPSI---RIQPSGTFYDYEAKYLSDETQYFCPAGL 229 D +++E + E A+LG + + I S FYDYE KY Q PA + Sbjct: 202 LDRRIIVEAGVVARELECAVLGNDKPQASVVGEITYSSEFYDYETKYTDGRAQLHIPAEI 261 Query: 230 EASQEANLQALVLKAWTTLGCKGWGRIDVM-LDSDGQFYLLEANTSPGMTSHSLVPMAAR 288 + +++L L+A+ LG G R D + S G+ + E NT PG T+ S+ P Sbjct: 262 PPAVSEQIRSLSLQAFQALGAAGLARFDFFYVPSTGEVLINEVNTLPGFTALSMYPQLWA 321 Query: 289 QAGMSFSQLVVRILELA 305 +G+SF +LV R+++LA Sbjct: 322 ASGLSFPELVHRLVQLA 338 >UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacillales RepID=DDL_LACRD Length = 378 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 111/357 (31%), Positives = 179/357 (50%), Gaps = 63/357 (17%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA--------------------Y 38 MT K IA+L GG S+E +VS S + L + D + Sbjct: 1 MTQKLHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIF 60 Query: 39 PVDPKEVDVTQLKSMGFQKV---------------------FIALHGRGGEDGTLQGMLE 77 +P++ Q+ + +QK+ F +HG GEDGT+QG+ + Sbjct: 61 DGEPED----QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFK 116 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT---RAEFEKGLSDKQLAEI 134 L+ PY GS + ASA+S DK +K + AG+ P+V +T +A++ G +++L + Sbjct: 117 LLNKPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNL 176 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGP-EFTVAIL 193 + VKP+++GSSVG+ +V + AL AF++D ++L+E+ ++ P E ++IL Sbjct: 177 T------FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISIL 230 Query: 194 GEE-----ILPSIRIQPSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTT 247 G E L ++R+ FYDYE K++ F P L + + LKA+ Sbjct: 231 GNEHPIASKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKA 290 Query: 248 LGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 LG KG RID ++DS+ YL E NT PG T+ SL P +G+S+S L+ R+++L Sbjct: 291 LGMKGMARIDFLVDSNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 347 >UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GNT9_STRCL Length = 312 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 168/311 (54%), Gaps = 13/311 (4%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 MT ++A+L GG S E + S S A LRE G + VD D + + F+ FI Sbjct: 1 MTMRVAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFWK-RLPDFEAAFI 59 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 A HG EDG LQG+LE+MGLPYTGSGV+AS++ M K K L G+ PW ++R Sbjct: 60 AGHGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSR- 118 Query: 121 EFEKGLSDKQLAEISA-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH-DEEVL 178 G + Q++ ++A +GLP+ KP+ G S V ++ L++ L ++ +E + Sbjct: 119 ----GATAAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYSSDEFI 174 Query: 179 IEKWLSGPEFTVAIL---GE-EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 E +L+G FTV +L G+ E LP + FYD EAK +Y CPA + S Sbjct: 175 AEPFLTGNTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLR 234 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 +Q L ++ +T GC+G R+D ML D + +LE NT PG+T + A+ +G+ + Sbjct: 235 DRMQELAVRVFTVCGCRGVARVDFMLSED-RPVVLEVNTVPGLTLQGNLAAMAKASGLGY 293 Query: 295 SQLVVRILELA 305 ++V +L+ A Sbjct: 294 RRVVEIMLQSA 304 >UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT Length = 332 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/328 (31%), Positives = 163/328 (49%), Gaps = 36/328 (10%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD------------------ 46 IA++ GG S+E +VS+ SG + + + + Y VD K +D Sbjct: 8 IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67 Query: 47 --VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLW 104 V + + F +I +HG+ GE+G +QG +L+ +PY+ GV+ AL+ DK Sbjct: 68 SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQIPYSTGGVLVEALTFDKYVLNNYL 127 Query: 105 QGAGLPVAPWVALTRAEFEKGLSDKQLAEISA-LGLPVIVKPSREGSSVGMSKVVAENAL 163 +G G+ VA + L R E + AEI LG+P VKP+ +GSS G+SKV + L Sbjct: 128 RGFGIKVADSILLRRGE------EYDEAEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQL 181 Query: 164 QDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYLSD 219 ALR+AF +EV+IE ++ G E + + + + P+ + S F+DY AKY + Sbjct: 182 APALRVAFMQSDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEVVTSNEFFDYNAKY-NG 240 Query: 220 ETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML--DSDGQ--FYLLEANTSP 275 + + PA + + A + L G RID ++ D DG+ +LE NT+P Sbjct: 241 QVEEITPARMSDETAKRVAAETSCIYDILHANGIIRIDYIISKDKDGKDVINMLEINTTP 300 Query: 276 GMTSHSLVPMAARQAGMSFSQLVVRILE 303 GMT S +P R AG+ ++ I+E Sbjct: 301 GMTVTSFIPQQVRAAGLDIKNVLSDIVE 328 >UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W6_9FIRM Length = 358 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/343 (31%), Positives = 170/343 (49%), Gaps = 45/343 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAG--------------------LREGGIDAYPVDPK 43 ++ V+ GG S+E VSL+S + L L G +D+ D Sbjct: 12 RLGVVFGGQSSEYSVSLHSVTSFLRQIHADNYEMTLIGINKNGHFYLYNGDVDSIEHDTW 71 Query: 44 EVDVTQL----------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 E + T + K + VF LHG+ GEDG +QG+LELM + Y G Sbjct: 72 ENEETCVSCAWVNGGIMPLDGSNKVIELDCVFPVLHGKNGEDGLIQGLLELMNIHYVGCD 131 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 VM+SA+SMDK +L + A +P A ++ L + + +Q+ E + LP I+KP Sbjct: 132 VMSSAMSMDKEIMHILCKEAKIPCADYICLYANR--ENPTFEQIQE--KIELPWIIKPCN 187 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDE--EVLIEKWLSGPEFTVAILG-EEILP-SI-R 202 GSS G+ V + + A + AF +D ++L+EK + G E A++G EEI SI Sbjct: 188 AGSSYGVHFVNNKEEFESACKDAFFYDGRGKILVEKVIKGFEIGCAVMGNEEIFTGSIDE 247 Query: 203 IQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 I+ +G F+D+E KY +CPA ++ Q L K + + C G R+D+ + Sbjct: 248 IEITGGFFDFEGKYEMKGAAIYCPARIDEKTFKEAQELARKTYIAMNCCGMARVDMFVTE 307 Query: 263 DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D + L E NT PG+T+ S P + AG+ F+ L+ +++ELA Sbjct: 308 DKEVILNELNTIPGLTATSRYPSMMKVAGIEFADLIDKLIELA 350 >UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUG2_ALKMQ Length = 358 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/346 (28%), Positives = 172/346 (49%), Gaps = 44/346 (12%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-----------EVDVTQ 49 M + VL GG S E VSL S +A++ L + YP+ E ++ + Sbjct: 1 MKTNVYVLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIWSNLGIVEDEIKE 60 Query: 50 LKSMGFQK-----------------------VFIALHGRGGEDGTLQGMLELMGLPYTGS 86 + + +Q VF ALHG GEDGT+QG+LE++ +PY G+ Sbjct: 61 ISELMYQSSNTVISSIETFLRSSFNEREQNIVFPALHGTNGEDGTIQGLLEILDIPYVGN 120 Query: 87 GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKG--LSDKQLAEISALGLPVIVK 144 GVM+SA+ +DK+ +K L+ +P + L + +++K S +++ E +G P VK Sbjct: 121 GVMSSAIGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEE--TIGYPAYVK 178 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQ 204 P+ GSSVG+++ L+ A+ AF +++++IE+ + G E ++++G E P + Sbjct: 179 PASLGSSVGINRCANREELEAAIHEAFSFEDKLVIEEEIIGREMQISVVGNE-FPKASVV 237 Query: 205 ----PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 F DY AKY + PA L ++ + +K++ L C G R+D + Sbjct: 238 GEFIQERQFMDYAAKYTDGKLIQVIPAKLTEKVSELMREVAIKSFDVLNCSGLVRVDYFV 297 Query: 261 DSDGQFYLLEANTSPGMTSHSLVP-MAARQAGMSFSQLVVRILELA 305 D +FY+ E NT PG T S+ P + + ++ +L+ +++ LA Sbjct: 298 TDDERFYVNEVNTMPGFTKLSMTPALWEKTDQTTYPELIEKLINLA 343 >UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN Length = 350 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 112/349 (32%), Positives = 174/349 (49%), Gaps = 56/349 (16%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGL-------------REG------------------ 33 +A+L GG S+E EVSL S ++VL L REG Sbjct: 6 VAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIRNDSWH 65 Query: 34 ----GIDAYPVDPKEVD--VTQLK-SMGFQKV---FIALHGRGGEDGTLQGMLELMGLPY 83 + A+ ++V VTQ +M KV F LHG+ GEDGT+QG+LEL G+P+ Sbjct: 66 QSEKCVPAFLSPCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGLLELAGIPF 125 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA----LGL 139 G ++SA+ MDK + L +G+G+ VA+ + LA + A LG Sbjct: 126 VGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAV--------YPNTDLATVQAATEPLGF 177 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG--EEI 197 P+ VKP++ GSS+G++K + + L + A QHD++V+IE+ ++G E A+LG E I Sbjct: 178 PLYVKPAKAGSSIGITKAYSLSELFFGIENALQHDDKVVIEENITGFEVGCAVLGNREVI 237 Query: 198 LPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 + + I+ F+DY KY + PA ++ ++ + GC+G+ R+ Sbjct: 238 VGEVDEIELLQGFFDYTEKYSLETAHIHVPARIDEELAHKIKQTATHLYQVFGCRGFARV 297 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D+ + DG E NT PG TS S P R AG+S+ +L+ ++ LA Sbjct: 298 DMFVTPDGDIVFNEVNTIPGFTSKSRYPSMLRAAGISYKELLDTLIMLA 346 >UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=DDL_GRAFK Length = 326 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 102/329 (31%), Positives = 165/329 (50%), Gaps = 31/329 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD--------------PKEVD 46 M KIA+ +GG S+E +S+NSG V L + Y V P ++ Sbjct: 1 MKKKIAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILKGEWFVVADDDTPYPIN 60 Query: 47 VTQL------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 + K + F VF +HG GE+G LQ LEL+G+P T SAL+ +K Sbjct: 61 KSNFTVKINDKVIQFDCVFNTIHGTPGENGLLQAYLELIGIPQTSCDYYQSALTFNKRDL 120 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 + + G+ A L + ++ ++ K++ + +GLP VK +R GSS G++KV E Sbjct: 121 ISVLRPYGIKAATNYFLNK---DQEINTKEI--VDKVGLPCFVKANRAGSSFGVTKVKTE 175 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKY 216 + + A + AF D+E +IE +L G E +V ++ + LP I P G F+DYEAKY Sbjct: 176 DEIISAAKTAFTEDDEAIIESFLDGTEVSVGVITYKGKVLALPVTEIIPDGEFFDYEAKY 235 Query: 217 LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 L ++Q PA + +Q + + + L KG R + + +G+ + +E NT+PG Sbjct: 236 LG-KSQEITPARISEEDTKKVQDIAIMIYKKLKMKGLSRSEFIF-HEGEPHFIEMNTNPG 293 Query: 277 MTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ S++P A +AG+S L +E A Sbjct: 294 ISQASILPQQAEKAGISLKDLFGSTIEAA 322 >UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteriales RepID=A4CP91_9FLAO Length = 329 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 107/320 (33%), Positives = 162/320 (50%), Gaps = 31/320 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGID-------------------AYPVDP 42 T KIAV++GG S+E E+SL SG V L D YPV Sbjct: 4 TKKIAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGREYPVSR 63 Query: 43 KEVDVT-QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 + V + ++ F VF A+HG GE+G +Q EL+G+P T G +A++ +K Sbjct: 64 HDFSVELEDGTLRFDCVFNAIHGTPGENGLMQAYFELIGMPQTSCGFYQAAVTFNKRDLL 123 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN 161 + + AG+P A L R G Q A + A+GLP VK +R GSS G+S V + Sbjct: 124 GILKSAGVPAARSYHLDR-----GQELNQQAILDAVGLPCFVKANRAGSSFGVSLVREAS 178 Query: 162 ALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYL 217 LQ A+ A + D+E+LIE L G E +V ++ +LP I F+DY+AKY Sbjct: 179 GLQAAVENALKEDDEILIEAALQGTEVSVGVIRYQGATRVLPITEIVSENDFFDYQAKY- 237 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 +++ PA + ++ L + + L G+ R + +L DG+ +LLE NT+PG+ Sbjct: 238 EGKSREITPARIPEDTAEKVRELAARIYDRLRMTGYSRSEFIL-VDGEPHLLEVNTTPGL 296 Query: 278 TSHSLVPMAARQAGMSFSQL 297 T S++P A AG+S ++L Sbjct: 297 TEASILPQQAACAGISLTEL 316 >UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAT5_9FIRM Length = 358 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 170/342 (49%), Gaps = 45/342 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLR-------------EGGIDAYPVDPKEVD---- 46 + V+ GG S E +VSL S V+ G+ EG Y D +++ Sbjct: 6 NVGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKTNEW 65 Query: 47 VTQLKSM-------------GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASAL 93 + K++ +F LHG+ GEDG +QG+ E+M PY G V+AS++ Sbjct: 66 INDSKNLISDFSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEVLASSV 125 Query: 94 SMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI-----SALGLPVIVKPSRE 148 MDK +K +++ G+PV V + + E +DK L L P+ VKP Sbjct: 126 CMDKDIAKRIFRSVGIPVVDDVLVFNTDIE---TDKLLEATLDRCEENLPYPMFVKPVNM 182 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG----EEILPSIRIQ 204 GSSVG+SK ++L++AL A + D ++L+EK ++ E VA+LG E P I Sbjct: 183 GSSVGISKAKDRDSLKEALLKAVKFDTKILVEKGINAREIEVAVLGNSHPEASYPG-EIV 241 Query: 205 PSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD 263 FYDYEAKYLS D ++ PA ++ ++ +KA+ +G G R+D LD D Sbjct: 242 SCKEFYDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAVKAFKAVGGSGLSRVDFFLDKD 301 Query: 264 GQ-FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + YL EANT PG T+ S+ G+ +S L+ ++++L Sbjct: 302 SKDIYLNEANTLPGFTNISMYAKMWDYMGIGYSDLIEKLIDL 343 >UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular organisms RepID=DDL_ANAVT Length = 367 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 111/355 (31%), Positives = 170/355 (47%), Gaps = 53/355 (14%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREG------------------------------ 33 ++ +L GG S E EVS++S A+ + L G Sbjct: 5 RVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVLK 64 Query: 34 -------GIDAYPVDPKEVDVTQLKSMGFQKV---------FIALHGRGGEDGTLQGMLE 77 ++ P D V+ Q +Q F LHG GEDGT+QG+L Sbjct: 65 SGAPLLESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLT 124 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF--EKGLSDKQLAEIS 135 LM P+ GSGV+ SAL MDK+ K+ ++ AGLP + A+TRA+ + K EI Sbjct: 125 LMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIE 184 Query: 136 A-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG 194 A LG P VKP+ GSSVG+SKV + L+DAL A +D +++E + E A+LG Sbjct: 185 ASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIVEAGVVAREVECAVLG 244 Query: 195 EEILPSI---RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCK 251 + + I + FYDYE KY + + PA + +Q + L+A+ + Sbjct: 245 NDQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAVIPDEISRQIQDMALQAFAAVDAA 304 Query: 252 GWGRIDVM-LDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G R+D +++ G+ + E NT PG T+ S+ P +G+ F +LV ++++LA Sbjct: 305 GLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQLA 359 >UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi (class) RepID=DDL_HERA2 Length = 361 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 108/348 (31%), Positives = 168/348 (48%), Gaps = 46/348 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------DP-----KEVD 46 ++ ++ GG S E EVSL S AV+ L P+ DP ++ D Sbjct: 5 RVGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRNGQWLSGGDPLLALEQQAD 64 Query: 47 VTQL---------------KSMG----------FQKVFIALHGRGGEDGTLQGMLELMGL 81 L +S G + LHG GEDGT+QG+ E L Sbjct: 65 QKMLGRTPQAGVVSETAIVQSAGSLPEQTNVAALDVIIPVLHGPFGEDGTIQGVFEFANL 124 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY G GV+A+++ MDK K + AGLP PW + R +++ + L P+ Sbjct: 125 PYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEATLHYPM 184 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG-EEILPS 200 VKP+ GSSVG+SKV L + A +D +++E+ ++ E VAILG ++ PS Sbjct: 185 FVKPANLGSSVGISKVSNRAELATGMAEAAGYDRRIVVEQGINAREIEVAILGNDDPKPS 244 Query: 201 I--RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 + + P+ FYDY KYL +TQ+ PA L+A+ L+ + + A+ + G R+D Sbjct: 245 VPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQLREMAVTAFKAIDGAGLARVDF 304 Query: 259 MLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ + G Y+ E NT PG T+ S P G+ +S+L+ R+++LA Sbjct: 305 FVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELLDRLIDLA 352 >UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B158 Length = 342 Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 146/271 (53%), Gaps = 15/271 (5%) Query: 48 TQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGA 107 T LKS F VF LHG+ GEDGT+QG+LE+ +PY G VMAS +MDK+ +K L+ A Sbjct: 71 TFLKS--FDVVFPVLHGQFGEDGTIQGLLEMAQVPYVGCRVMASCTAMDKIYAKKLFDQA 128 Query: 108 GLPVAPWVALTRAEFEKGLS---------DKQLAEISALGLPVIVKPSREGSSVGMSKVV 158 +P P + + + +K + + ++ + LG P VK SR GSSVG KV Sbjct: 129 HIPQVPSLYVKKRYDDKLVVVDDEGRESFNVEMEIYTHLGFPCFVKASRSGSSVGCYKVN 188 Query: 159 AENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR---IQPSGTFYDYEAK 215 + L L A +D V++EK ++ E A++G + + + R I P G FY YE+K Sbjct: 189 SLTELLPRLHEAATYDRHVVVEKAINATELECAVIGNDDISASRVGQILPHGEFYTYESK 248 Query: 216 YLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTS 274 Y +++ PA ++ S + ++ +KA+ + G R D D+D G YL E NT Sbjct: 249 YEDEQSATCIPARVDQSIQDYIRQAAVKAFKAVDGTGLARCDFFYDNDTGNVYLNEINTM 308 Query: 275 PGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 PG T+ S+ P + AG+ L+ +++LA Sbjct: 309 PGFTNISMYPQLMKDAGLDTPALIDELIKLA 339 >UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S655_9ACTO Length = 377 Score = 156 bits (394), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 109/359 (30%), Positives = 170/359 (47%), Gaps = 57/359 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGL-------------REGGI------------- 35 T +I V+ GG SAE EVS S V L R GGI Sbjct: 4 TVRIGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLG 63 Query: 36 ---------DAYPVDPKEVDVTQLKSMG----------------FQKVFIALHGRGGEDG 70 D PV V++ + + G VF LHG GEDG Sbjct: 64 TVTAGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDG 123 Query: 71 TLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQ 130 +QG+LE +G+PY G G++ASA+ MDK+ K + +P P+V + ++ Sbjct: 124 VVQGLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEK 183 Query: 131 LAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTV 190 L + L P+ VKP+R GSS+G+S+V + L A+ AF+HD VL+E+ ++G E Sbjct: 184 L--VVGLRGPLFVKPARMGSSIGISRVADGDDLVAAVEEAFRHDHVVLVEQGVTGRELEC 241 Query: 191 AILG---EEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTT 247 +LG E ++ +G ++DY KY D PA L ++ L ++A+T Sbjct: 242 GVLGGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTA 301 Query: 248 LGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +G G R+D + D + ++ E NT PG T+HS+ P ++G+++ ++V R++ LA Sbjct: 302 IGGWGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVVDRLVALA 360 >UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepID=B9YQN3_ANAAZ Length = 394 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/254 (38%), Positives = 138/254 (54%), Gaps = 7/254 (2%) Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F LHG GEDGT+Q +L LM +P+ GSGV+ SA MDK+ K + AGLP + ALT Sbjct: 135 FPILHGPNGEDGTIQALLTLMQVPFVGSGVLGSATGMDKIAMKTAFAQAGLPQVKYKALT 194 Query: 119 RAEF--EKGLSDKQLAEISA-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE 175 RA+ + K EI A LG P VKP+ GSSVG++KV + L+ AL A +D Sbjct: 195 RAQIWSNPCVFPKLCDEIEATLGYPYFVKPANLGSSVGIAKVQSRQELEAALDNAATYDR 254 Query: 176 EVLIEKWLSGPEFTVAILGEEILPSI---RIQPSGTFYDYEAKYLSDETQYFCPAGLEAS 232 +++E + E A+LG + + I FYDYE KY + F PA L S Sbjct: 255 RIIVEAGVVAREVECAVLGNDNPKASVIGEITFDSDFYDYETKYTQGKADLFIPAHLPES 314 Query: 233 QEANLQALVLKAWTTLGCKGWGRIDVM-LDSDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 +Q L+A+T + G R+D +++ G+ + E NT PG TS S+ P G Sbjct: 315 AVQQIQEKALQAFTAVDAAGLARVDFFYVEATGEILINEINTLPGFTSTSMYPQLWANTG 374 Query: 292 MSFSQLVVRILELA 305 +SF +LV ++++LA Sbjct: 375 ISFPKLVDQLIQLA 388 >UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=DDL_BACFN Length = 324 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/327 (28%), Positives = 158/327 (48%), Gaps = 30/327 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------------PVD 41 M IA++ GG ++E VSL S + + + + + Y PVD Sbjct: 1 MKRNIAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLQDGSKTPVD 60 Query: 42 PKEVDVTQ-LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 + + + F +I +HG GEDG LQG +++ +PY+ GV+A+A++ DK Sbjct: 61 RNDFSFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMIRIPYSCCGVLAAAITYDKFVC 120 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 + G+ ++ + L + + +SD+ + E +GLP +KP+ GSS G++KV Sbjct: 121 NQYLKAFGVRISESLLLRQGQ---AVSDEDVVE--KIGLPCFIKPNLGGSSFGVTKVKTR 175 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKY 216 +Q A+ AF EEV+IE ++ G E T + + P + F+DY+AKY Sbjct: 176 EQIQPAIAKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKY 235 Query: 217 LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 + + PA + +Q L + LGC G R+D ++ + LLE NT+PG Sbjct: 236 -NGQVDEITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITEGEKINLLEVNTTPG 294 Query: 277 MTSHSLVPMAARQAGMSFSQLVVRILE 303 MT+ S +P R AG+ ++ I+E Sbjct: 295 MTATSFIPQQVRAAGLDIKDVMTDIIE 321 >UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BAK0_9FIRM Length = 320 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 13/261 (4%) Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F LHG GEDGT+QG+ EL LPY G V AS+ MDK+ +K +++ AG+P V + Sbjct: 58 FPVLHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKVFESAGIPQVKSVYVK 117 Query: 119 RAE------FEKGLSDKQLAEIS---ALGLPVIVKPSREGSSVGMSKVVAENALQDALRL 169 + EK + + + E S LG+P +K SR GSSVG + E L L Sbjct: 118 KRNDGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGCYRCDKEEDLMAKLEE 177 Query: 170 AFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR---IQPSGTFYDYEAKYLSDETQYFCP 226 A ++D +++E+ + E A+LG + + R I P G FY +E+KY E++ P Sbjct: 178 AAKYDTHIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYTFESKYEDAESKTCIP 237 Query: 227 AGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPM 285 A ++ + ++ ++A+ + G R+D LD YL E NT PG TS S+ P Sbjct: 238 AKVDEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLNEINTLPGFTSISMYPQ 297 Query: 286 AARQAGMSFSQLVVRILELAD 306 G S+S+L+ +++E+AD Sbjct: 298 LMEDYGYSYSELLDKLIEIAD 318 >UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidetes RepID=DDL_FLAPJ Length = 328 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/325 (31%), Positives = 162/325 (49%), Gaps = 30/325 (9%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGID------------------AYPVDPKEV 45 +AV++GG S E +SL SG +L L + + YP++ + Sbjct: 2 NVAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKADF 61 Query: 46 DVTQLKSM-GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLW 104 T+ + F +HG GEDG LQ EL+ +PYTG SAL+ +K + + Sbjct: 62 SFTKNGVITKFDVAINTVHGTPGEDGHLQSYWELIDIPYTGCNFYQSALTFNKRDTLSVL 121 Query: 105 QGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ 164 +P A + L + + G K+ ALGLP VKP++ GSS+G+SKV A + L+ Sbjct: 122 TKFNIPKAKSIYLRKGDVIDGNEIKK-----ALGLPFFVKPNQSGSSLGVSKVDALDQLE 176 Query: 165 DALRLAFQHDEEVLIEKWLSGPEFTVAILG----EEILPSIRIQPSGTFYDYEAKYLSDE 220 AL AF D E+LIE +L+G E +V +L ++L I F+DYEAKYL + Sbjct: 177 KALEFAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVLGITEILSQNDFFDYEAKYLG-K 235 Query: 221 TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSH 280 ++ PA + +E + K + +LG G+ R D ++ +G + +E NT+PG++ Sbjct: 236 SEEITPARISKEEEILVAESAKKIYNSLGMSGFSRTDFII-MNGIPHFIEINTNPGLSPQ 294 Query: 281 SLVPMAARQAGMSFSQLVVRILELA 305 S+ P A A M Q++ + LA Sbjct: 295 SIFPQQAMFAKMDMPQMLDNEITLA 319 >UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPX6_9FIRM Length = 370 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 114/355 (32%), Positives = 169/355 (47%), Gaps = 53/355 (14%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLRE----GGIDAYPV------------------- 40 ++A+ GG S+E EVS S +A L L E G + +PV Sbjct: 8 RVALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPEAMA 67 Query: 41 -----------------DPKEVDVTQLKSMGFQKVFI-----ALHGRGGEDGTLQGMLEL 78 D + V L+ + V I +HG+ GEDGT+QG+ E+ Sbjct: 68 DGSWEQGADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTIQGLFEM 127 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 +PY G GV+ASA+ MDK + + AG+P W + RAE E+ + +ALG Sbjct: 128 ARIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDRAEAALG 187 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 P+ VKP+ GSSVG+SK AL AL +A + D++V++E+++ G E A +G Sbjct: 188 YPIFVKPANAGSSVGISKAADRAALDAALDVALREDDKVVLEEFIDGQEVECAAIGNPDD 247 Query: 199 PSI-------RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCK 251 P+ I FY Y+ KY + +Q PA L + ++A KA+ LGC Sbjct: 248 PANITTTRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLSEEKLDEVKAEARKAYLALGCA 307 Query: 252 GWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G R D ++ G+ E NT PG T+ S+ P G++F QLV R+L+LA Sbjct: 308 GLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLVDRLLQLA 362 >UniRef50_D0RN14 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Bacteria RepID=D0RN14_9RICK Length = 305 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 162/299 (54%), Gaps = 14/299 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 KI +L+GG S ER VS++SG A +++ G + Y DP + +K + VF LH Sbjct: 6 KILILMGGRSKERSVSIDSGKACYQAIKKIGYEVYKYDPIKNIKNNIKKINPDIVFNCLH 65 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G+ GEDG +Q +LE + +PYT SGV AS ++MDK++SK ++ + + + + Sbjct: 66 GKYGEDGKIQKILEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFKIIKKISDI 125 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI---E 180 K K I+KP EGSS+G+ ++ E + + ++ I E Sbjct: 126 KNKISKS---------KFILKPINEGSSLGV-QIFPEYPTSKNFKKIKKLIKKYKILIQE 175 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY-LSDETQYFCPAGLEASQEANLQA 239 ++ G E A+LG + + S+ I P FYDY+AKY LS +T++ P + + ++ Sbjct: 176 PYIEGREIQTAVLGNKAIGSVEIIPKRNFYDYKAKYSLSAKTKHIIPPKIPKRLDNKIKR 235 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + L A +L C+G R D + + + Y+LE NT PGMT+ SLVP A+ G+SF++LV Sbjct: 236 IALIAHKSLKCRGVTRSDFRVMPNNKIYILEINTQPGMTNLSLVPEIAQNFGLSFTELV 294 >UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteriaceae RepID=C6X2F8_FLAB3 Length = 339 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 165/329 (50%), Gaps = 36/329 (10%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------DPKEVDVTQLKS- 52 +AV++GG S E VSL SG + L + Y V D +E V K+ Sbjct: 16 NVAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKDEWYFLDDREQKVPVNKAD 75 Query: 53 ----------MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL 102 + F F +HG+ GE+G LQ + +G YTG G SAL+ +K + Sbjct: 76 FSVNLDSGFDVKFDVCFNIIHGKPGENGELQAYWDTIGQKYTGCGFYQSALTFNKKDTLA 135 Query: 103 LWQGAGLPVAPWVALTRAEF--EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 + G+P A V + + E E G+ I L LP+ VKP++ GSS+G+SKV + Sbjct: 136 VLSKYGIPAAKSVYIRKGEAIDEDGI-------IEDLKLPLFVKPNQSGSSLGISKVKDK 188 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL---GEEILPSI-RIQPSGTFYDYEAKY 216 + Q A+ AF+ D+EVLIE +L G E +V ++ GE I+ I I F+DYEAKY Sbjct: 189 SEFQKAIDFAFEQDDEVLIESFLDGMEVSVGVVDFNGESIVLGITEIVSHKEFFDYEAKY 248 Query: 217 LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 ++ PA ++ ++ + KA+ +LG G+ R + ++ G Y+LE NT+PG Sbjct: 249 -EGASEEITPARIDDETRQKVEEIAKKAYNSLGMSGFSRSEFII-MGGTPYMLEMNTNPG 306 Query: 277 MTSHSLVPMAARQAGMSFSQLVVRILELA 305 + S++P A+ G+S L +E A Sbjct: 307 FSPASILPQQAKIYGISIKDLCGNEVEKA 335 >UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria RepID=DDL_BIFLI Length = 395 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/275 (35%), Positives = 147/275 (53%), Gaps = 24/275 (8%) Query: 50 LKSMGF-QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAG 108 L S+G V LHG GEDGT+QG+LE+MG+PY G GV ASA MDK +K++ AG Sbjct: 120 LTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLGAAG 179 Query: 109 LPVAPWVALTRAEFEKGLSDKQLAEISALGL--PVIVKPSREGSSVGMSKV-------VA 159 +P AP V + F LA+I GL P+ +KPSR GSS G++KV Sbjct: 180 IPTAPGVTVDARNFTAA---DVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADDRETQ 236 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPS------IRIQPSGTF 209 ++ L A+ A +HD +VL+E+ + G E A+L G+E S + Q F Sbjct: 237 QDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQF 296 Query: 210 YDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYL 268 YD+++KY+ + PA L S +++ + +A+ + G R+D + DG + Sbjct: 297 YDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTPDGTVMV 356 Query: 269 LEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 E NT PG T S+ P A G+S+++L+ R++E Sbjct: 357 NEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 >UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiaceae RepID=A8MKQ7_ALKOO Length = 349 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/348 (29%), Positives = 166/348 (47%), Gaps = 54/348 (15%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------------ 40 +AV+ GG S+E EVSL S +AV+ L I+ Y V Sbjct: 6 VAVIFGGESSEYEVSLKSASAVMENL---DIEKYDVIKIGITRDGKWLRYNGTLDKIKEN 62 Query: 41 ------------------DPK--EVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMG 80 D K E+ + VF LHGR GEDGTLQG+ E+ G Sbjct: 63 TWFLDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGLFEITG 122 Query: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 +PY G V AS++ +DK + + Q AG V +A+ E ++ + AE +G P Sbjct: 123 IPYVGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKEDEIN--KFAE--NVGYP 178 Query: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE--IL 198 + VKPSREGSS+G++K + L + A + D +V++E+ + G E AILG + I+ Sbjct: 179 IYVKPSREGSSIGITKAENHSDLMGGIEAALKLDGKVVLEENIEGFEVGCAILGNDDLIV 238 Query: 199 PSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 ++ I+ F+D+ KY ++ PA ++ ++ + + LGC G R+D Sbjct: 239 GTVDEIEVPNGFFDFTEKYTLQNSKIHLPARIDQDLSERIKEIGKGIYKALGCSGLSRVD 298 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + +D + + E NT PG T+ S P AG+++ ++ ++++L Sbjct: 299 LFVDKNHRIVFNEVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLIDLG 346 >UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio bacteriovorus RepID=DDL_BDEBA Length = 365 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 108/351 (30%), Positives = 164/351 (46%), Gaps = 52/351 (14%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGL-------------REGGIDAYP-------- 39 M +A++ GG SAE EVSL S V L +EG +P Sbjct: 3 MKKIVALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEA 62 Query: 40 ---VD---PKEVDVTQLKSMGFQKV---------------FIALHGRGGEDGTLQGMLEL 78 VD P + + L S+ + V F LHG GEDGT+QG+ ++ Sbjct: 63 TKIVDSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKM 122 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 + LP+ G GV +SA MDK K L A +P A ++ LT +K ++ + E LG Sbjct: 123 VQLPFVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLT--PHQKNDYNEIVKE---LG 177 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 P +KP+ GSSVG+ K+ L+ AFQ D +VL E+++ G E +++G Sbjct: 178 SPFFIKPANAGSSVGVHKIKTAEDFVVKLKDAFQFDTKVLAEEFIQGREVECSVMGHNHA 237 Query: 199 PSI----RIQPSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGW 253 P + P FY YEAKY+ D PA L +Q + + + +GC G Sbjct: 238 PKASLPGEVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGL 297 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 R+D + +G+ Y+ E NT PG T S+ P +G+S+ L+ ++++L Sbjct: 298 TRVDFFIRPNGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQL 348 >UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizobium RepID=DDLA_RHILO Length = 357 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 116/352 (32%), Positives = 167/352 (47%), Gaps = 57/352 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGL-----------------------REGGIDA--- 37 ++A+L GG SAE +VS S A VL + E G D Sbjct: 6 RVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSEAGADGAGA 65 Query: 38 -YPVDPKEV--------DVTQLKSMGFQK-----VFIALHGRGGEDGTLQGMLELMGLPY 83 P D EV + L G Q VF LHG GEDG++QG E+ + Y Sbjct: 66 QVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAEVADVAY 125 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS-ALGLPVI 142 G G++ASA +MDK +K L + AGL VA V + + + EI+ ALGLP Sbjct: 126 VGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDV------GSFQEIAGALGLPFF 179 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR 202 KP+R+GSS G+SKV + + A+ A ++D + LIE+++ G E ++L E S+ Sbjct: 180 AKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVL-ERADGSLT 238 Query: 203 IQPSGT--------FYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGW 253 + P G FY YEAKY E PA + A A + +A+ LGC+ Sbjct: 239 VSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEAM 298 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D L +DG + E NT PG T S+ A AG+ +S+++ ++E A Sbjct: 299 ARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHA 350 >UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria RepID=C3RJR8_9MOLU Length = 346 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 107/345 (31%), Positives = 169/345 (48%), Gaps = 42/345 (12%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREG-------GIDA----YPVDPKEVDVTQ 49 M K+ VL GG S+E VS S +VL L GID + +D K+ D+ + Sbjct: 1 MKQKLLVLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAK 60 Query: 50 ----------------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASAL 93 LK+ F LHG GEDGT+QG+ EL LPY G VM S++ Sbjct: 61 NTWLDNSSMVEDVYGLLKNQDV--AFPVLHGMYGEDGTIQGLFELAKLPYVGCRVMGSSV 118 Query: 94 SMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGL----SDKQLAEIS-----ALGLPVIVK 144 +MDK+ +K + G+P V + + EK + + ++ EI LG+P +K Sbjct: 119 AMDKIYTKKILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEIEDYIVRELGMPCFIK 178 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE--ILPSI- 201 SR GSSVG + + L L A ++D V++E+ + E A+LG + I+ + Sbjct: 179 ASRSGSSVGCYRCDNQTELIGKLSEAAKYDRHVVVEECIDCIELETAVLGNDDVIVSRVG 238 Query: 202 RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD 261 +I P G FY +E+KY +E++ PA ++ + ++ +K + + G R+D LD Sbjct: 239 QIMPHGEFYTFESKYEDEESKTCIPALVDEQIQEQIRQYAIKVFKAVDGHGLSRVDFFLD 298 Query: 262 SD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + YL E NT PG T S+ P G+++ +L+ R++ LA Sbjct: 299 KKTNKIYLNEINTMPGFTKISMYPQLMNDFGITYPELLDRLIVLA 343 >UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma whipplei RepID=DDL_TROWT Length = 347 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 100/270 (37%), Positives = 144/270 (53%), Gaps = 17/270 (6%) Query: 43 KEVDVTQLKS----MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKL 98 K+++V Q + + F VF LHG GEDGT+QGML+L+ +PY GSGV ASA +MDK Sbjct: 76 KKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSGVFASAAAMDKH 135 Query: 99 RSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS-ALGLPVIVKPSREGSSVGMSKV 157 +K+L AG+PV PW + + K D L +IS P+ VKP GSS G + V Sbjct: 136 YTKILCSHAGIPVLPWYLIKGHAWHKN-RDSFLKQISDRFTFPLFVKPVDAGSSFGCTFV 194 Query: 158 VAENALQDALRLAFQHDEEVLIEKWLSGPE-FTVAILGEEILPS---IRIQPSGT-FYDY 212 L A+ A QH + ++E L PE F I +L + ++ SG+ FYDY Sbjct: 195 DFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIENNGVLQCSELVFVKHSGSKFYDY 254 Query: 213 EAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEAN 272 AKYL + ++ PA + + + K + LGC+ + RID + G L E N Sbjct: 255 SAKYL-NPVEFVIPAQFDNTD--GYAEIASKVFFELGCRHYARIDFFVTESG-LVLNEIN 310 Query: 273 TSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 TSPG+T S+ P + + M +SQ++ IL Sbjct: 311 TSPGLTQKSIFPSSFK--SMQYSQVIETIL 338 >UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia magna RepID=DDL_FINM2 Length = 350 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 101/343 (29%), Positives = 168/343 (48%), Gaps = 45/343 (13%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGL--------------------REGGIDAYPV 40 M I VL GG S E EVS+ S ++ L +E + Sbjct: 1 MQKNIYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKS 60 Query: 41 DPK---EVDVTQLKSMG--FQKV-------FIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 D + + D++ ++S+ +K+ F A+HG GEDGT+QG ++++ LP+ G V Sbjct: 61 DEELILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNV 120 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI-SALGLPVIVKPSR 147 + SAL MDK + +++ +P A +V L + + D L EI V VKP Sbjct: 121 LGSALCMDKGYTNDIFELNKIPQAKYVVLCKND------DYNLKEIFEKTSKAVYVKPCN 174 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI----LPSIRI 203 GSSVG+ + E L+ A++ AFQ+D +L+E+ + GPE +A++G + P + Sbjct: 175 AGSSVGVMRAETEEELEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQ 234 Query: 204 QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD 263 F+DY+AKY +T+ P ++ E + L K + + G+ R+D M D Sbjct: 235 IHDVEFFDYDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVD-MFVKD 293 Query: 264 GQFYLLEANTSPGMTSHSLVPMAARQAG-MSFSQLVVRILELA 305 + ++ E NT PG+T HS+ P+ + MS S++ ++ LA Sbjct: 294 NELWVNEINTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336 >UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9D0_9PORP Length = 329 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 106/325 (32%), Positives = 158/325 (48%), Gaps = 29/325 (8%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK--------------EVDVTQ 49 IA++ GG S E EVS S +L + + Y V +D Sbjct: 5 NIAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADAWSVTDATGREGTIDRAL 64 Query: 50 LKSMGFQKV-----FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLW 104 + G ++V +I +HG GE+G LQG L+++G+PYT GV+ AL+ +K Sbjct: 65 VARFGAEEVTFAVAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYL 124 Query: 105 QGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ 164 GL +A L E ++Q E S L LP+ VKP+ GSS+ +++ + L Sbjct: 125 AHHGLRIARSQRLHNQTKELSPEEQQQIE-STLRLPLFVKPNTGGSSIATTRIEQWDQLA 183 Query: 165 DALRLAFQHDEEVLIEKWLSGPEFTV--AILGEEI--LPSIRIQPSGTFYDYEAKYL--S 218 A+ A+ +VL+E+ + G E T IL +E LP + TF+DY+AKY S Sbjct: 184 TAVVDAYTAAPDVLVEECIVGTEVTCGCVILPDEAFALPVTEVVAHDTFFDYDAKYYGKS 243 Query: 219 DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMT 278 DE PA + +Q L L C G+ RID ++++DG LLE NT+PGMT Sbjct: 244 DE---ITPARISPELTQRVQETSLTIAHLLDCYGFVRIDFIIEADGIPTLLEVNTTPGMT 300 Query: 279 SHSLVPMAARQAGMSFSQLVVRILE 303 S +P R AG+ S L+ RI++ Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIK 325 >UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein vanA n=122 Tax=Bacteria RepID=VANA_ENTFC Length = 343 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 105/346 (30%), Positives = 169/346 (48%), Gaps = 54/346 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLA------------GLREGGI--------------DA 37 K+A+L GG S E +VS+ S + A G+ + G+ + Sbjct: 5 KVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNC 64 Query: 38 YPV----DPKEVDVTQLKSMGFQ-----KVFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 Y D K + K+ ++ F ALHG+ GEDG++QG+ EL G+P+ G + Sbjct: 65 YSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDI 124 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSRE 148 +SA+ MDK + ++ + AG+ + + + D+ +A + PV VKP+R Sbjct: 125 QSSAICMDKSLTYIVAKNAGIATPAFWVINK-------DDRPVA--ATFTYPVFVKPARS 175 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI------LPSIR 202 GSS G+ KV + + L A+ A Q+D ++LIE+ +SG E A+LG + IR Sbjct: 176 GSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIR 235 Query: 203 IQPSGTFY---DYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 +Q G F + E + S+ PA L A + +Q K + LGC+G R+D+ Sbjct: 236 LQ-YGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMF 294 Query: 260 LDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L +G+ L E NT PG TS+S P AG++ +L+ R++ LA Sbjct: 295 LQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 340 >UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaproteobacteria RepID=DDLA_BRUME Length = 353 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 108/355 (30%), Positives = 165/355 (46%), Gaps = 72/355 (20%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 +I VL GG SAE +VS+ S V+ L +A PV Sbjct: 7 RIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSS 66 Query: 41 ---------------------DPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELM 79 P E D + +F LHG GEDG +QG+ ++ Sbjct: 67 GAELCLVPGGCGRAIVVPDAGAPYEADKIDI-------IFPVLHGLHGEDGAVQGLAQVA 119 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 +P G G+ SA ++DK +K L AGL A V +TR E + +Q ALGL Sbjct: 120 RVPLAGCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQ-----ALGL 174 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---- 195 P+ +KP+R+GSSVG+ KVV E Q A+ F +D+++L E+++ E +L + Sbjct: 175 PIFIKPARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGA 234 Query: 196 -------EILPSIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTT 247 EI+P+ S FY Y+AKY+ +D T+ PA L E ++A+ KA+ Sbjct: 235 LFVSRAGEIVPA----ESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRV 290 Query: 248 LGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 LGC R+D + +D + L E NT PG T S+ +G+S+ +++ R++ Sbjct: 291 LGCDSMARVDFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 345 >UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacteriales RepID=C7PEF5_CHIPD Length = 329 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 106/331 (32%), Positives = 159/331 (48%), Gaps = 35/331 (10%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP-------------------VD 41 M IA++ GG S E +S+ S A + L + Y VD Sbjct: 1 MKKNIALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDGWNYTGSDGQLIAVD 60 Query: 42 PKEVDVT-QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 + +T + F VFI +HG GEDG LQG E++G+P+T G++ SAL+ +K Sbjct: 61 RNDFTLTINGNKVIFDAVFIGIHGTPGEDGRLQGYFEMLGIPFTSCGMVTSALTFNKSYC 120 Query: 101 KLLWQGAG-LPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA 159 + G + V+ V + F+ D Q A + L LPV VKP+ GSS+GMSKV Sbjct: 121 NKVVASLGVVNVSKSVHI----FKDQPFDIQ-AILQELKLPVFVKPAEGGSSIGMSKVNT 175 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAK 215 L A+ AF D ++LIE+++ G E T + +LP I S F+DYEAK Sbjct: 176 AEELAPAIEKAFNEDVQILIEEFVKGREITCGLYRSNGAFTVLPVTEIISSKEFFDYEAK 235 Query: 216 YLSDETQYFCPAGLEASQE--ANLQALVLKAWTTLGCKGWGRIDVML-DSDGQFYLLEAN 272 Y ++ PA EA E +Q K + L C+G R+D + ++ + + LE N Sbjct: 236 YTPGVSREVTPA--EAPNEIVNQIQETAKKLYNKLNCRGIVRMDFIWEEASNRLFFLEVN 293 Query: 273 TSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 T PG + +S+VP R AG + + ++E Sbjct: 294 TMPGQSENSIVPQQVRAAGKTLQEFYGTLIE 324 >UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacterium RepID=DDL_CORJK Length = 373 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 135/257 (52%), Gaps = 16/257 (6%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 VF LHG GEDGT+QG+L+L G+ Y G+GV+ASA MDK +K L + AG+PV + L Sbjct: 122 VFPVLHGVNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGEELIL 181 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 + + E LGLPV VKP+R GSS+G+SKV + A+ LAF +D +V Sbjct: 182 FQPR------ELTAEEKERLGLPVFVKPARGGSSIGISKVDSWEEFDAAIDLAFSNDNKV 235 Query: 178 LIEKWLSGPEFTVAILGE---EILPSIRIQPSGT------FYDYEAKYLSDETQYFCPAG 228 ++E + G E +L I+ S+ +GT FY ++AKY+ PA Sbjct: 236 IVEAMIHGAEVECGVLQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAP 295 Query: 229 LEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAAR 288 L A ++ L ++ + LGC G R+D +G L E NT PG T S+ P Sbjct: 296 LPAETIKEIRQLAIRTFNALGCDGIARVDFFATENGPV-LNEINTMPGFTPISMYPKMFA 354 Query: 289 QAGMSFSQLVVRILELA 305 G+SF LV ++ A Sbjct: 355 AEGVSFGDLVSALIARA 371 >UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia RepID=DDL_BORHD Length = 365 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 165/353 (46%), Gaps = 55/353 (15%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-------------- 46 M + ++ GG S E E+SL S + + L + +D Y + P +D Sbjct: 2 MKKNLMLIFGGVSFEHEISLRSAYGIYSALMK--LDKYNLYPSFIDKITGIWYLLDSVPD 59 Query: 47 ---------------------VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTG 85 + + VF +HGR GEDG +QG L++M +P G Sbjct: 60 APELIKRDSSAIISLIPGCGIFVNDEDLEIDVVFPIVHGRTGEDGAIQGFLKMMDIPCVG 119 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF--EKGLSDKQLAEISALGLPVIV 143 +G++ SA+S++K KLL + +P+ P++ + ++ +K K + + +L PVIV Sbjct: 120 AGILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKQ--SLNYPVIV 177 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRI 203 KP+ GSS+G+S + ++ + AF++D V++EK++ E +++G E I+I Sbjct: 178 KPAMLGSSIGISIAYNDTQIEKCIEEAFEYDLTVVVEKFMKVREIECSVIGNE---QIKI 234 Query: 204 QPSG-------TFYDYEAKYLS---DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 G FYDY+AKY + + + PA L+ +++ + L +G Sbjct: 235 FTPGEIVVQDFVFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKCLELRGM 294 Query: 254 GRIDVMLDSDGQF-YLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 RID +++ D Y+ E NT PG T S+ G+ + LV ++ LA Sbjct: 295 ARIDFLIEKDTNLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLVDNLVSLA 347 >UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0A6_ERYRH Length = 338 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 168/343 (48%), Gaps = 55/343 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----DPK------EVDVTQLKSM 53 ++A++ G ++E ++S+ S A+VL + D P+ D K +D+ Q + Sbjct: 5 QVALVFGSINSEHDISVASAASVLEHFPKEKFDCVPLYIGKDGKWYTGNYTLDMMQSNKL 64 Query: 54 ---------------GF-----------QKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 GF F+ LHGR GE G +QG+L+ +P+TG Sbjct: 65 EGHRELYLQFNYDRPGFIYADDQSLLPVDVAFLMLHGRMGEGGQVQGLLKCANIPFTGCD 124 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRA---EFEKGLSDKQLAEISALGLPVIVK 144 V++SAL MDK + ++ + AG+ +A + +T +FEK + P IVK Sbjct: 125 VLSSALCMDKGFTHIICEAAGIDMAAYQLITHINDIDFEK------------VEYPCIVK 172 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL--GEEILPS-- 200 PSREGSS G+S V + L +A AF+ D VLIE ++ G E + IL +E++ S Sbjct: 173 PSREGSSFGVSYVRNYDELLNACLFAFEFDSRVLIEAYIKGTEVGLGILKTDQELIVSEV 232 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 ++ SG +D++ KY T+ + S +Q L A+ L C + R+D + Sbjct: 233 DQVNVSGEVFDFQEKYHPHATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFSRLDFFV 292 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 D + +L E NT PG TS S P +AG+S+ +L+ +++E Sbjct: 293 TEDHRIFLNEVNTIPGFTSSSRYPGMLDRAGVSYPELITKMIE 335 >UniRef50_Q60GK8 D-alanyl-D-alanine ligase n=2 Tax=Streptomyces RepID=Q60GK8_STRLA Length = 345 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 114/351 (32%), Positives = 168/351 (47%), Gaps = 58/351 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-----------------VD 46 +I +L GG S ER+VSL SG++V L E G + VDP + Sbjct: 2 RIVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAGEPVLAGPLHPGDVVDGFE 61 Query: 47 VTQLKSMGFQK-------------------------VFIALHGRGGEDGTLQGMLELMGL 81 V + G ++ VF ALHG GEDG +Q LE G+ Sbjct: 62 VGKEPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAAGV 121 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL--GL 139 +TG+G A A + +K R++ + AG+PV T +D+ E+ L Sbjct: 122 RFTGAGSTACAAAWNKERAQAVLAAAGVPV------TERALWPAAADEVPKEVRPLVAAG 175 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE---VLIEKWLSGPEFTVAILGEE 196 PV+ KP +GSSV + + ++L + RLA Q + +L+E +LSG EFTV ++G + Sbjct: 176 PVVAKPVADGSSVSVHRA---DSLAELERLAPQMRADGGDLLVEPFLSGREFTVGVVGGQ 232 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGC--KGWG 254 +LP I I+ S +DY AKY CPA + + LQ L L+A LG + Sbjct: 233 VLPVIEIELSTPLFDYAAKYQPGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYS 292 Query: 255 RIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R D D+ G+ LE N PG+T+ SL+P+ A AG +++ L RI+ LA Sbjct: 293 RADFRCDAAGEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLA 343 >UniRef50_B9KHS3 D-alanine--D-alanine ligase n=5 Tax=Anaplasma marginale RepID=DDL_ANAMF Length = 334 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 157/301 (52%), Gaps = 10/301 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 +AVL GG+S EREVSL G V L G +A +D V QL +M V+ ALHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG + G+L+++GL T S V AS++ MDK+ +K + + G+ + LT+ E Sbjct: 74 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEEL-- 131 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 LS K++ L P ++KP R GS++G+ + +++ D A ++ +++E+++S Sbjct: 132 -LSAKEV-----LPYPFVIKPVRGGSTIGVHAIFSKSEYLDLSAHADTLEDRMIVEEYVS 185 Query: 185 GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 G E A+ + ++ + G Y Y+AKY+ ++ PA L LK Sbjct: 186 GQEVQTAVFLGRAIGTMELLFEGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKL 245 Query: 245 WTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAA-RQAGMSFSQLVVRIL 302 LGCK R+D D ++ LLE NT PGMT S +P + G++F +V I+ Sbjct: 246 HQCLGCKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIV 305 Query: 303 E 303 + Sbjct: 306 Q 306 >UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AC0 Length = 357 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 104/350 (29%), Positives = 164/350 (46%), Gaps = 53/350 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLRE--------------------GGIDAYPV--- 40 K AV+ GGTS E ++SL S A V+ + E G ++ P Sbjct: 5 KAAVIFGGTSREHKLSLASAAEVIRNIPEDKYEVICIGITRKGRWLYFPGDVEDIPTGEW 64 Query: 41 -------------DPKEVDVTQLKS-----MGFQKVFIALHGRGGEDGTLQGMLELMGLP 82 DP + +++ VF + G+ G DGT+QG+L+L G+P Sbjct: 65 EQDPDCTSAIISPDPLHRGIILIENGEAVVRKIDVVFPVVMGKHGADGTIQGLLDLSGIP 124 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA-LGLPV 141 Y G GV+A+A MDK ++ + A W +T+ E + DK+ EI+ LG P+ Sbjct: 125 YVGCGVLAAASCMDKSHIHMVMDDYDIATADWRIITQREISE--IDKRCHEIAGELGFPL 182 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI 201 IVKP++ G+S G K L A+++AF +D +V++EK++SG + A+ G + S Sbjct: 183 IVKPAKSGTSAGTGKADDLAQLIAAVKVAFSNDNKVVVEKYVSGRKMEAAVFGYDTPFST 242 Query: 202 RIQPSGTFYDYEAKYLSDETQYFC------PAGLEASQEANLQALVLKAWTTLGCKGWGR 255 I G D + Y E PA + +A+++ +KA+ +GCKG R Sbjct: 243 YI---GEILDPDRVYDPTEVNQSTGDGLKIPADISDELQASIRETAVKAYKAMGCKGLAR 299 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +D L DG+ L + TSPG+ +S+ P G+S V +LE A Sbjct: 300 LDFFLTDDGRLLLNKIGTSPGLRKNSVFPKLMEHMGISHEDFVDMLLEQA 349 >UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=DDL_PORG3 Length = 330 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/322 (29%), Positives = 159/322 (49%), Gaps = 29/322 (9%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----DPKEVDVTQLKS-------- 52 +AV+ GG S E VSL S A +L+ L A+ V D V V++ + Sbjct: 6 VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPLDKNDF 65 Query: 53 --------MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLW 104 + F +I +HG GE+G LQG L+++G+PY + +L+ +K Sbjct: 66 SFDLDDERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125 Query: 105 QGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ 164 G G+ +A + LT + + ++D + +GLP+ VKP+ GSS+ +KVV L Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLT----ARMGLPLFVKPNVGGSSIATTKVVEAAQLL 181 Query: 165 DALRLAFQHDEEVLIEKWLSGPEFTVA--ILGEEI--LPSIRIQPSGTFYDYEAKYLSDE 220 A+ AF EEV+IE+ + G E T + +E+ LP + F+D++AKY + Sbjct: 182 PAIGQAFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEVVAHNEFFDFDAKY-NGA 240 Query: 221 TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSH 280 + PA + +Q + + + L +G R+D ++++DG LLE NT+PGMT Sbjct: 241 VEEITPARISDEATRLIQTMTARIYELLNARGIIRVDYIIEADGIPTLLEVNTTPGMTPT 300 Query: 281 SLVPMAARQAGMSFSQLVVRIL 302 S +P R A M +++ I+ Sbjct: 301 SFIPQQVRAAEMDMKEVLCTII 322 >UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho melanesiensis BI429 RepID=DDL_THEM4 Length = 361 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 60/347 (17%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-----------------------D 41 I + G S E E+S+ + VL+ + + P+ D Sbjct: 4 IGIFFGSKSVEHEISIITAQQVLSSIDRKKYNVIPIYISKSGEWFTGKVLEDLETFKDFD 63 Query: 42 PKEVDVTQLKSMGFQK----------------VFIALHGRGGEDGTLQGMLELMGLPYTG 85 E ++ S + F+ HG GEDGT QGM E+ G+PY+G Sbjct: 64 KLEKKAKKIDSFSVKNNKLLLKYGLKKQTIDFCFLVFHGTNGEDGTFQGMCEIFGIPYSG 123 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALT--RAEFEKGLSDKQLAEISALGLPVIV 143 +SA +MDK+ +KLL + + V + T EF K LG P+IV Sbjct: 124 CNHFSSAFTMDKVVTKLLLKEKEISVVDFEYTTEINEEFFKRCE-------KNLGYPMIV 176 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG-EEILPS-- 200 KP+R GSS+G+SKVV ++A++ D +VL+EKW++ E A++G + I S Sbjct: 177 KPARLGSSIGVSKVVDRKNFEEAVKNVLLFDNKVLVEKWINAREINCAVMGYKNIFVSEL 236 Query: 201 IRIQPSGTFYDYEAKYLSDETQY---FCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 I F+++E KY ++ PA ++ + + ++ + + L C G RID Sbjct: 237 EEINKKNDFFNFEEKYFKKGKKFSNHIIPARIDENLKNKIKEIAKDTFKILECSGNVRID 296 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 ++ + Y+ E NT PG S + +++G +FSQ++ ++ + Sbjct: 297 FLIAD--KIYVNEINTIPGALSFYI----WQKSGFTFSQIIDNMINM 337 >UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=C1YHT6_NOCDA Length = 374 Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 110/313 (35%), Positives = 167/313 (53%), Gaps = 21/313 (6%) Query: 12 TSAERE-VSLNSGAAVLAGLREGGID-AYPVDPK----EVDVTQ--LKSMGFQKVFIALH 63 TS + E + +++G L + E G+D A P D VD + + G V LH Sbjct: 56 TSGDPESLRIDAGTRALPSVSEDGVDLALPFDSAGQLMVVDPVKGPERLAGVDVVLPLLH 115 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDGT+QG+ E+MG+ Y G+GV +S+ SMDK+ K + +G G+P + +VA+T ++ Sbjct: 116 GPFGEDGTIQGLFEMMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFVAITDRQW- 174 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKV---VAENALQDALRLAFQHDEEVLIE 180 + + L +++ LG V VKP+R GSSVG+SKV +A+ A+ A +HD +VL+E Sbjct: 175 RTERKRVLDDVAELGATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREHDPKVLVE 234 Query: 181 KWLSGPEFTVAILGEE-------ILPS-IRIQPSGTFYDYEAKYLSDETQYFCPAGLEAS 232 + G E +L E LP+ + + FYD+EAKYLS + PA L Sbjct: 235 AQVVGREVECGVLESEDGGTPDVSLPAEVHVADGFDFYDFEAKYLS-TSSLTIPAELPEE 293 Query: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGM 292 A L+AL + + +GC+G R+D DG + E NT PG T S P G+ Sbjct: 294 ATARLRALAAEVFEAMGCEGLARVDFFYTEDGDILVNELNTMPGFTPASAFPQMWAATGV 353 Query: 293 SFSQLVVRILELA 305 ++ LV R++ A Sbjct: 354 DYAALVERMISTA 366 >UniRef50_C8W9G2 D-alanine--D-alanine ligase n=2 Tax=Atopobium RepID=C8W9G2_ATOPD Length = 333 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 104/340 (30%), Positives = 162/340 (47%), Gaps = 51/340 (15%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M K+AV++GG S ER SL SGA V L + G + P+D V L++ F+ Sbjct: 1 MATKVAVIMGGASFERNFSLKSGALVSEALEKCGYEVLPLDADAHLVDTLRAEKPDVAFV 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKL-------------RSKLLWQGA 107 LHG GGEDG + +LE + +PY GS + + +K S+++W Sbjct: 61 CLHGAGGEDGAVPALLEFLKIPYVGSRPASCRAAWNKADMPFIVRQAWSKEESEVIWP-- 118 Query: 108 GLPVAPWVALTRAEFEKGLSDKQLAEISAL-----------GLPVIVKPSREGSSVGMSK 156 P + LT + F K L +AL G P+ VKP GS++G+SK Sbjct: 119 -----PQIVLTASAF------KDLGAAAALDMVPERLGGGVGFPLAVKPVHGGSAMGLSK 167 Query: 157 VVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDY 212 V + + L AL A D+ V+I++W+ G E +V +L GE+ LP + I YD Sbjct: 168 VDSADQLGKALLGALGFDDSVIIQQWVDGVEVSVTVLSDADGEKTLPPVEISVIKGIYDT 227 Query: 213 EAKYLSDETQYFCPAGLEA---------SQEANLQALVLKAWTTLGCKGWGRIDVMLDSD 263 +A+ + ++FCP E+ + L+ L+ +T GC+ RID + D Sbjct: 228 DARLDPERIEHFCPVRSESLAALGADPVAAREALERAALEVFTAYGCRDLARIDFIWDGH 287 Query: 264 GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 ++ T PG+T SLVPMA AG + ++ +++E Sbjct: 288 -HVMVMGLKTFPGLTETSLVPMAIEAAGYAVEDVLAQLVE 326 >UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Streptomyces roseosporus NRRL 15998 RepID=UPI0001AECDB6 Length = 320 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 19/311 (6%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKV---FIA 61 + VL GG S ER SL SG L G + +D E + QK+ IA Sbjct: 11 VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLIDTAEPQAIE----SIQKIDVALIA 66 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GGEDG +QG+LE++G+PYTGSGV+ASA+ M K K L GL W+ L Sbjct: 67 LHGPGGEDGKIQGLLEILGVPYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITL---- 122 Query: 122 FEKGLSDKQLAEI--SALGLPVIVKPSREGSSVGMSKVVAENALQDAL-RLAFQHDEEVL 178 + L+ +++++ S +G PV +KPS G S+G + + L L Q E L Sbjct: 123 -DPSLTSDEMSKVVESHVGWPVFIKPSAGGGSLGAGIGRSPSDFAHMLADLNRQDYLEYL 181 Query: 179 IEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 +E+++ G +V ++ E LP ++ FYDY AK+ + CP+ L Sbjct: 182 VEEYVPGRPCSVGVIETSGRPEALPVHDVETDREFYDYAAKHDPSKRIENCPSILPKDVT 241 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 LQ ++ G G R+D ++D +G+ +LE NT PG++ + A+ AGMS+ Sbjct: 242 ERLQEEAVRIHMLTGAHGVSRVDFIVDDNGRSVILEINTVPGLSDMGNLATMAKAAGMSY 301 Query: 295 SQLVVRILELA 305 LV +L+ A Sbjct: 302 PALVTAVLKTA 312 >UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales RepID=DDL_METS4 Length = 382 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 114/351 (32%), Positives = 160/351 (45%), Gaps = 61/351 (17%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDV------------- 47 M +A+L GG SAE EVS+ S V L D Y V P +D Sbjct: 1 MRRNVALLFGGRSAEHEVSIVSAGNVARALDP---DRYAVTPIAIDKETGAWRLCPPLAP 57 Query: 48 ----------------------------TQLKSMGFQKVFIALHGRGGEDGTLQGMLELM 79 T S F V LHG GEDGT+QG L+L Sbjct: 58 GEAPAMVREGPRVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALDLA 117 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 G+PY GSGV+ SA +MDK +K L + AGLP+ P++ A +G++ + E + Sbjct: 118 GVPYVGSGVIGSAAAMDKDVAKRLMRDAGLPIVPYLV---AGPRRGVAYTEAVE-ALESR 173 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS-GPEFTVAILGEEIL 198 + VKP+ GSSVG+S+V AL AF +DE++LIE+ + E A+L E Sbjct: 174 TLFVKPANMGSSVGVSRVADAGQFDQALAHAFAYDEKILIERAVPRAREIEFAVL-ETAE 232 Query: 199 PSIRIQPSGT--------FYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLG 249 +R+ P G FY Y+AKY+ D PA L + + L +A+ L Sbjct: 233 GEVRVSPPGEIAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALA 292 Query: 250 CKGWGRIDVMLDSDGQ--FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 C G R+D+ LD D ++ E NT PG T+ S+ P AG++ L+ Sbjct: 293 CAGLARVDLFLDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALM 343 >UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaerobacteraceae RepID=DDL_THETN Length = 389 Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 105/363 (28%), Positives = 171/363 (47%), Gaps = 66/363 (18%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------DPKEV 45 K+AV+ GG S E EVS+ +G V+ + + + PV + K++ Sbjct: 3 KVAVMFGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKGLLDISNYKDI 62 Query: 46 D----------------VTQLKSMGFQK--------------VFIALHGRGGEDGTLQGM 75 + +L F+K +F A HG GEDGT+QG+ Sbjct: 63 PSLLKKCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQGL 122 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI- 134 +L +PY GSGV+ SA MDK+ K +++ LP+ ++ R E+EK + L I Sbjct: 123 FQLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKN-KEAMLDLIE 181 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGP-EFTVAIL 193 S L P+ VKP+ GSS+G+SK + L DA+ +A +D ++++E+ + P E +++ Sbjct: 182 SKLKYPMFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDRKIIVEEAVKDPMEVNCSVM 241 Query: 194 GEEILPSIRIQ----PSGTFYDYEAKYLSDE------TQYFCPAGLEASQEANLQALVLK 243 G + I + P F Y+ KY+ E T PA + + +Q L K Sbjct: 242 GIDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKK 301 Query: 244 AWTTLGCKGWGRIDVMLDSDG-QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 + L C G RID +L+ + + Y+ E NT PG + L + G+SF +L+ R++ Sbjct: 302 VFQILDCSGLARIDFLLEKETMKVYVNEINTIPGSFAFYL----WKPLGISFEKLIDRLI 357 Query: 303 ELA 305 E A Sbjct: 358 EYA 360 >UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=DDL_BIFA0 Length = 378 Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 170/370 (45%), Gaps = 70/370 (18%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 ++AVL GG + E +S S A+ + L +A P+ Sbjct: 5 RVAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLAEG 64 Query: 41 --------DPKEVDVT---------------QLKSMGFQKVFI-ALHGRGGEDGTLQGML 76 D +EV +T L S+G V + ALHG GEDGT+QG+ Sbjct: 65 LPEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQGLF 124 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLS-----DKQL 131 E+MG+PY G GV+ASA MDK +K+L + AG+PVAP + L ++ ++ L Sbjct: 125 EMMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEEFL 184 Query: 132 AEISALGL--PVIVKPSREGSSVGMSKVVAENALQDALRLAFQ---HDEEVLIEKWLSGP 186 +++ GL P+ VKPSR GSS G++KV F+ HD VL+E+ + Sbjct: 185 RQVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGIDAR 244 Query: 187 EFTVAI------------LGEEILPSIRIQPSGTFYDYEAKYLSDETQYF-CPAGLEASQ 233 E A+ L E++ R + FYD+++KY+ + + PA + Sbjct: 245 EIECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGDDL 304 Query: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 A ++ ++A+ + G R+D + +DG + E NT PG TS S+ P A G+ Sbjct: 305 IARVRETAVRAFDAVDGMGLSRVDTFVTADGDVLVNEINTLPGCTSISMFPQAWEAMGIP 364 Query: 294 FSQLVVRILE 303 F +V ++E Sbjct: 365 FRTVVTDLIE 374 >UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacillaceae RepID=DDL_LACC3 Length = 357 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 165/347 (47%), Gaps = 56/347 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA--------YPVDPKEV---------- 45 KI VL GG S ER VS++SG + LR+ G A Y ++ K V Sbjct: 2 KIVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANTS 61 Query: 46 -------------DVTQLKSMGFQK---------------VFIALHGRGGEDGTLQGMLE 77 D+ +L+ G + VF+ALHG GE+G +Q + + Sbjct: 62 KDLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVFD 121 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 + G+ YTGSG +AS ++M+K+ SK + G+ + + EF++ KQ Sbjct: 122 INGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGF-----KEFKRDQGPKQTVPFD-- 174 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI 197 PV+VKP+ GSSVG + + L+ L F+ D ++E++ G EF++ ++ Sbjct: 175 -FPVVVKPTSGGSSVGTHIIHNQEELESGLEDVFRFDNSAIVEEFTPGREFSLGVVNGHA 233 Query: 198 LPSIRIQPSGTFYDYEAKYLSDETQYFC-PAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 +I I+ +YD++ K+ + T + P L+ ++ + ++ LG + +GRI Sbjct: 234 YSAIEIKVRSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGRI 293 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 D + G +++EAN PGMT SL+P A G+ + LV+ I+ Sbjct: 294 DFFANEKG-VWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIVN 339 >UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=DDL_WIGBR Length = 350 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 135/251 (53%), Gaps = 7/251 (2%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 +F LHG GE+G QG+ + P+ GS V++S++ MDK SK + G+ V P + L Sbjct: 100 IFSILHGSNGENGAFQGLFNTIYTPFVGSNVLSSSICMDKDISKRILSTFGISVVPSITL 159 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 + + K I+ + P +KPS +GSS G++ +L++++ +AF + +++ Sbjct: 160 ----YYENYKKKINKIINNIKFPCCIKPSNQGSSFGVNVANDFISLKESIDVAFLYSKKI 215 Query: 178 LIEKWLSGPEFTVAILGE-EILPSI--RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 LIE ++ G E V +LG ++ S+ I+ FYDY+ KY+S +T+ PA + Sbjct: 216 LIEPFIQGREIEVGVLGNRNVISSVCGEIKFKKIFYDYKEKYISKKTKIIIPAKISNEIS 275 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 ++ + A+ +L C R+D L + + +L E NT PG T +S+ P ++G+ F Sbjct: 276 NKIKKIAKLAFISLECSIMARVDFFLTKNKKIFLNEINTIPGFTKNSIYPKLWSKSGLDF 335 Query: 295 SQLVVRILELA 305 L+ +++ L Sbjct: 336 KSLINKLILLT 346 >UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococcus RepID=DDL_PROMP Length = 355 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 165/346 (47%), Gaps = 47/346 (13%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGL---------------------------------- 30 I ++ GG S E +VS++S V L Sbjct: 9 IGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLVLLKE 68 Query: 31 --REGGIDAYPVDPKEVDVTQLKSMGFQKV---FIALHGRGGEDGTLQGMLELMGLPYTG 85 + ID V PK ++ L ++ FQ + F LHG GEDG + G+L+ P G Sbjct: 69 KRKNETIDKNQVFPKR-EINFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVG 127 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF--EKGLSDKQLAEISALGLPVIV 143 G++ SAL MDK+ K ++ +P ++ + + +K ++ + I L LPV V Sbjct: 128 GGILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFV 187 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRI 203 KP+ GSS+G+SK + + AL+ A++ D ++IE+ L E I+G L + I Sbjct: 188 KPANSGSSLGISKAKTRSEIIKALQKAWEIDSRIVIEEGLDVRELECGIIGNLKLTASEI 247 Query: 204 ---QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 S +YDY++KY S + Q PA +++ ++ + +++ L G+ R+D L Sbjct: 248 GEVSYSTDWYDYDSKY-SMDNQIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFFL 306 Query: 261 DS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + + +L E NT PG TS S+ PM +G++ QLV ++++++ Sbjct: 307 EKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDIS 352 >UniRef50_C5C6M9 D-alanine--D-alanine ligase n=4 Tax=Actinomycetales RepID=C5C6M9_BEUC1 Length = 313 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 157/302 (51%), Gaps = 5/302 (1%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M+ + VL GG S ER+VSL SG V LR+ G+ A D + L V+ Sbjct: 1 MSFDVLVLAGGLSHERDVSLRSGRRVAEALRDAGVSAAVRDVDADLLAYLDDARPDVVWP 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GEDG+++ +LEL+G+ G+G S ++ K +K + AG+ L ++ Sbjct: 61 LLHGSTGEDGSIRDLLELVGVRAVGTGSAGSRIAWAKPVAKTVLARAGVATPASATLPQS 120 Query: 121 EFEKGLSDKQLAEI-SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 F + L + LGLP++VKP+ GS++G+S V + AL A+ F + + LI Sbjct: 121 LFRELGPHAVLGRVLDRLGLPLVVKPASGGSALGVSLVTSAEALPQAMVSCFSYGDVALI 180 Query: 180 EKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+ ++G E V+++ G LP + I YD++A+Y + T+YF PA L A A Sbjct: 181 EQAVTGTEVAVSVVDLGDGPVALPPVEIVVDDGPYDFDARYNAGRTEYFTPARLPADHLA 240 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 A+ ++A L + R D+++D G + LE N +PGMT SL P+AA + Sbjct: 241 AACAVAVRAHDVLRLRHLSRTDLVVDGYGVAWFLEVNVAPGMTETSLFPLAAAASPTPLP 300 Query: 296 QL 297 +L Sbjct: 301 EL 302 >UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma centrale str. Israel RepID=D1ASV0_ANACI Length = 336 Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 154/301 (51%), Gaps = 10/301 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 IAVL GG+S EREVSL G + L G A VD QL +M V+ ALHG Sbjct: 15 IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG G+L+++GL YT S V AS++ MDK+ +K + + G+ + LT+ E Sbjct: 75 GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEV-- 132 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 LS K++ + P ++KP GS++G+ + + + D A + +L+E+++ Sbjct: 133 -LSAKEV-----MPYPFVIKPICGGSTIGVHAIFSRSEYLDLSVHADALEGRMLVEEYIP 186 Query: 185 GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 G E A+ + ++ G Y Y+AKY+ ++ PA L + +K Sbjct: 187 GQEVHTAVFLGRAIGTMEFLFEGRVYGYDAKYVEGLCRHVFPANLSDDVYSLTMEWAVKL 246 Query: 245 WTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVP-MAARQAGMSFSQLVVRIL 302 + LGC+ R+D D ++ LLE NT PGMT+ S +P + + G+ F Q+V I+ Sbjct: 247 YQCLGCRTVSRVDFRYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIV 306 Query: 303 E 303 + Sbjct: 307 K 307 >UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomonas putida RepID=DDLA_PSEPK Length = 352 Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 118/347 (34%), Positives = 170/347 (48%), Gaps = 55/347 (15%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGL-------------REGG--IDAYPVD-PKEVD 46 + IA++ GG S+E V+L S A + A L REG P P VD Sbjct: 4 NVIALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVD 63 Query: 47 -----------------VTQ---LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGS 86 TQ +G +F ALHGR GEDGT+QG+ + GLP GS Sbjct: 64 RSAPLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGS 123 Query: 87 GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI-VKP 145 GV+ SA++MDK +K + Q AGL V PW+A+ + L + LG + VKP Sbjct: 124 GVLGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMRPWEEL-------VECLGSSTLFVKP 176 Query: 146 SREGSSVGMSKVVAENALQ--DALRLAFQHDEEVLIEKWLSGPEFTVAILGEE------I 197 + GSS+G+S+V NAL+ A +A + D +VL+E + G E +L E + Sbjct: 177 ATSGSSIGVSRV--SNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASV 234 Query: 198 LPSIRIQPSGTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 + I + +YDY+AKY S+ T P+ L A +QAL ++A+ L KG+ R+ Sbjct: 235 VGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARV 294 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 D L +G+ L E NT PG TS S+ P +G +LV ++E Sbjct: 295 DFFLTEEGEIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVE 341 >UniRef50_A6TSD6 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSD6_ALKMQ Length = 339 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 143/250 (57%), Gaps = 26/250 (10%) Query: 72 LQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQL 131 + +LE++G+PY GSG++A +L+++K +K ++Q G+P + E EK S+ Sbjct: 82 IPALLEMLGIPYVGSGILAHSLALNKAMAKKIFQYHGVPTPAFQVFQTGE-EKLDSN--- 137 Query: 132 AEISALGLPVIVKPSREGSSVGM---SKVVAENALQDAL-RLAFQHDEEVLIEKWLSGPE 187 L P+I KP+ EGS G+ S V E L + L Q++ VL+E+++ G E Sbjct: 138 -----LKFPLIAKPACEGSGFGIHVDSVVYDEQGLMKKVSELLRQYEPPVLVEEFIEGRE 192 Query: 188 FTVAILG----EEILPSIRI------QPSGTFYDYEAKY-LSDETQYFCPAGLEASQEAN 236 FTV ++G + ILP + I + G FY +E K D+T+Y CPA + + E + Sbjct: 193 FTVGVIGNGESKRILPIMEIDFEDIPEEHGKFYTFEVKNNFGDQTKYHCPASISMALEKS 252 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTS-HSLVPMAARQAGMSFS 295 + V KA+ LGCK R+DV++ ++ + Y+LE N+ PG+ HS +P A AG+S+ Sbjct: 253 IMENVSKAFDVLGCKDIARVDVLVKNE-RPYILEINSLPGLKHLHSDLPKMAVVAGLSYK 311 Query: 296 QLVVRILELA 305 +L++ ILE+A Sbjct: 312 ELIMEILEVA 321 >UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella RepID=DDL_LEGPA Length = 364 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/354 (31%), Positives = 164/354 (46%), Gaps = 62/354 (17%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQK------ 57 + +L GG S E EVSL S A+VL L + Y + P +D KS F + Sbjct: 6 NLVLLYGGKSGEHEVSLVSAASVLKHLDS---EKYHIIPIAMD----KSGRFHRHDYNDL 58 Query: 58 --------------------------------VFIALHGRGGEDGTLQGMLELMGLPYTG 85 VF +HG EDG LQG+LEL G+ Y G Sbjct: 59 LACSDKLPVVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVG 118 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQ--LAEI-SALGLPVI 142 V++SA+ MDK ++ L GL A + L+ + S++Q E+ S G P+ Sbjct: 119 CDVLSSAIGMDKDMARRLACINGLKSARYKLLS---WHANASERQQFCHEVASEFGWPLF 175 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI----- 197 VKP GSSVG+ K + L A+ A ++DEE+L+E+++ G E +A+L I Sbjct: 176 VKPCSLGSSVGIHKANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKP 235 Query: 198 ----LPSIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKG 252 + I++ +Y Y AKYL S +T PA L S E L+ ++ L CKG Sbjct: 236 RVSMVGEIKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKG 295 Query: 253 WGRIDVML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D + D + Y E NT PG TS S+ P + G+++ L+ ++ LA Sbjct: 296 MARVDFFVNDKTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLLDELINLA 349 >UniRef50_Q1QNT9 D-alanine--D-alanine ligase n=13 Tax=Alphaproteobacteria RepID=Q1QNT9_NITHX Length = 340 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 112/339 (33%), Positives = 162/339 (47%), Gaps = 53/339 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-------DAYPVDPKEVDVTQLK----- 51 +I +L GG++ ER VS+ S A+ L E + D + V EV + + Sbjct: 2 RITILFGGSNKERLVSVASAQALHRALPEADLWFWDIRDDVHNVR-SEVLLDHARPFEDE 60 Query: 52 ------SMGFQKVF-----------IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALS 94 SM F++ + LHG E+G LQ M EL G+P+TGSG AS L+ Sbjct: 61 FVPGGTSMPFEQALDRARAEGRVLVLGLHGGRAENGELQAMCELRGIPFTGSGSAASHLA 120 Query: 95 MDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGM 154 DK+ +K AG+ V L D+ AE L I KP+R+GSS G+ Sbjct: 121 FDKVAAKRFAALAGVTTPAGVPLEEI-------DRAFAEHGRL----IAKPARDGSSYGL 169 Query: 155 SKVVAENALQD--ALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-----ILPSIRIQPSG 207 V NA QD A+R A + EE +IE ++SG E T +L LP + I P+ Sbjct: 170 IFV---NAKQDFVAVRHAAK-TEEYVIEPFVSGIEATCGVLERSDGTVVALPPVEIVPAE 225 Query: 208 TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFY 267 +DY +KYL+ TQ CP +S A + L+A L C+G+ R D ++ Y Sbjct: 226 GRFDYASKYLAQTTQEICPGRFSSSITARIMDHALRAHRALSCRGYSRTDFIVTGKEPVY 285 Query: 268 LLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 LE NT PG+T+ SL P A + G+ F+ + + LA+ Sbjct: 286 -LETNTLPGLTAASLYPKALKAQGIGFADFLRDQIVLAE 323 >UniRef50_B0RDP5 D-alanine--D-alanine ligase B n=4 Tax=Actinobacteria (class) RepID=B0RDP5_CLAMS Length = 321 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 104/306 (33%), Positives = 156/306 (50%), Gaps = 5/306 (1%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 + VL GG S ER+VSL SG V+ LR G+ A DP + L+ V+ LHG Sbjct: 9 VLVLAGGISHERDVSLRSGRRVVDALRGAGVVASLRDPDATLLDFLRETPPAVVWPVLHG 68 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF-E 123 GEDG L G+LEL G+PY GS A+ L+ DK +K + G+ V L + F E Sbjct: 69 ASGEDGALLGLLELAGVPYVGSSARAARLAWDKPTAKAIAGTVGIRTPRSVTLPKDTFRE 128 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 G + A+ P VKP+R GS+ G++ V +AL A+ A+ + + LIE+ + Sbjct: 129 LGAAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVRDADALPRAMVDAYTYGDVALIEQLI 188 Query: 184 SGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 G E + ++ G E LP+ I P+ Y YEA+Y + T+++ PA + + A Sbjct: 189 EGTEVAIGVIDTGAGPEALPATEIVPTSGVYGYEARYNAGLTRFYTPARISPEEAAAAST 248 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + LG R+D+++D+ G+ + LE N PG+T SL+P AG+ L Sbjct: 249 AAVGIHRALGIGQMSRVDIIIDAAGEPWFLEVNVIPGLTETSLLPQGLAAAGIEVGDLYR 308 Query: 300 RILELA 305 R+ E A Sbjct: 309 RLAEAA 314 >UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q872P6_NEUCR Length = 346 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 100/337 (29%), Positives = 159/337 (47%), Gaps = 39/337 (11%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY----------------------PVD 41 IA+++GG S E +VS+++G A+ A + + Y PVD Sbjct: 8 NIAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDNDKQIPVD 67 Query: 42 PKEVDVT--QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 + VT + + F +I++HG GE+G LQG +++GLPYT G SAL+ +K Sbjct: 68 RNDFSVTLSTGEKIQFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYTSALTANKGH 127 Query: 100 SKLLWQGAG-LPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVV 158 + + G + VA L R + + L E LPV VKP+ GSSV +KV Sbjct: 128 CNPVVRSFGVVEVAKSRLLHRNQISALDPEALLFE---FDLPVFVKPASGGSSVATTKVK 184 Query: 159 AENALQDALRLAFQHD--EEVLIEKWLSGPEFTVAILGE-----EILPSIRIQPSGT--F 209 + + A+ A + D +VL+E+++ G EF ++ + + P + P G + Sbjct: 185 SIEQVVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRDAEGWLHVFPITEVIPHGDSEY 244 Query: 210 YDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYL 268 +DY AKY ++ PA +E ++ + L C+G R D + + Y Sbjct: 245 FDYNAKYNGSSSK-VTPAEVETQVSDRIKDTSTMLYDLLDCRGVVRFDYRYNPELYALYF 303 Query: 269 LEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 LE NT PG T S+VP AR AG+S + L ++E A Sbjct: 304 LEVNTIPGQTPESIVPQQARAAGISTADLYHMVIECA 340 >UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiales RepID=A9KKE7_CLOPH Length = 353 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 141/259 (54%), Gaps = 10/259 (3%) Query: 55 FQKV---FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPV 111 +QKV F LHG GEDGT+QG+LEL G+PY G GV+AS++SMDKL +K++ G+ Sbjct: 91 YQKVDVVFPVLHGLFGEDGTVQGLLELAGVPYVGCGVLASSVSMDKLYTKIIVDSLGIRQ 150 Query: 112 APWVALTRAEFEKGLSDKQLAEI-SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLA 170 A + + E E+ +K + I + + PV +KPS GSS G++K + L L+ A Sbjct: 151 AAYEPVYAKELEE--MNKVVERIENRISYPVFIKPSNAGSSKGITKAHNRDDLIVGLKEA 208 Query: 171 FQHDEEVLIEKWLSGPEFTVAILG--EEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPA 227 +HD ++L+E+ + G E A+LG E + I + FYDY+AKY + +++ Sbjct: 209 AEHDRKILVEETIVGREIECAVLGGMEAKASGVGEILAAAEFYDYDAKYNNADSKTIISP 268 Query: 228 GLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMA 286 L + + +K + + R+D L+ D + E NT PG T+ S+ PM Sbjct: 269 ELPEGKAQEISDAAVKIFRAVDGYSLSRVDFFLEKDTNEIVFNEINTLPGFTAISMYPML 328 Query: 287 ARQAGMSFSQLVVRILELA 305 G++ QLV ++++ A Sbjct: 329 WEAKGIAKPQLVEKLIQTA 347 >UniRef50_C0VTV5 D-alanyl-alanine synthetase A n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VTV5_9CORY Length = 315 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/261 (35%), Positives = 138/261 (52%), Gaps = 27/261 (10%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 +F LHG GEDGT+QG+ EL G+PY G+GV+ASA MDK +K L + AGLP+ + L Sbjct: 63 IFPVLHGLNGEDGTIQGLFELSGVPYVGNGVLASACGMDKQYTKKLCKLAGLPIGKDLVL 122 Query: 118 TRA-EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 EF G L PV VKP+R GSS+G+S+V + + +A+RLA + D + Sbjct: 123 EGGEEFIPG----------TLNFPVYVKPARGGSSIGISRVEDVSGIDEAIRLARESDPK 172 Query: 177 VLIEKWLSGPEFTVAILGEEILPSIRIQPS------GT------FYDYEAKYLSDETQYF 224 V+IE+ + G E +L P R+ + GT FYD+ AKYL + Sbjct: 173 VIIEEEIKGIEVECGVLE---YPDGRVVAAAPAELIGTEDGEAGFYDFSAKYLDGQVSAH 229 Query: 225 CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVP 284 PA L + A ++ + ++ + L C G R+D + G + E NT PG T S+ P Sbjct: 230 IPARLSEEETARVKEIAVQTFKALNCNGLARVDFFVTEHGPV-INEINTLPGFTPISMYP 288 Query: 285 MAARQAGMSFSQLVVRILELA 305 + G+S+ L+ ++E A Sbjct: 289 QVFQAEGISYGDLLHILIEQA 309 >UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SQZ6_PSYIN Length = 380 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 168/356 (47%), Gaps = 61/356 (17%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------------- 42 K+AV+ GG S E +VS+ S +LA + ++ Y V+P Sbjct: 7 KVAVVFGGKSTEHDVSIISAGHILANI---DMEKYFVEPFYVKKDGTFADHQELTLCLEN 63 Query: 43 ---------------KEVDVTQLKSMG-------------FQKVFIALHGRGGEDGTLQG 74 E+++ + + G F VF LHG GEDGT+QG Sbjct: 64 LLNEHRDKIFPAMKEGEIELKKWIAKGTSSDFLGGIAGKKFDIVFPVLHGLNGEDGTIQG 123 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 MLE MG+PY G GV ASA +DK +K++ Q +PV + A+ + E+E ++ + +I Sbjct: 124 MLEFMGVPYVGCGVSASAFCIDKEATKVICQVNDIPVMDYTAVKKYEWENS-TENIINDI 182 Query: 135 -SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGP-EFTVAI 192 + P VKP+R GSS+G+S+ L+ +L+ AF++D +V++E+ + P E TV + Sbjct: 183 QKKMNYPFYVKPARLGSSIGISRAENTVELKTSLKDAFKYDCKVVVEQGVESPRELTVGV 242 Query: 193 LGEEILPSIRI-----QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTT 247 +G + S+ + S ++++++KY + PA LE + + ++ + Sbjct: 243 MGIDDQVSLSAIGEFSRGSNLYFNFDSKYGKTGHKGLVPAPLEENIQEIIEKYSHLIFKK 302 Query: 248 LGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 G+ RID L D + YL E NT PG + + G+ + + + +E Sbjct: 303 FELSGFARIDYFLCGD-KVYLNEINTMPGFETGDTFMRIWQNKGVDMQKFIDKAIE 357 >UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT22_9FIRM Length = 390 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 25/264 (9%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 +F ALHG GEDG +QG+ E M +PY G GV+A A MDK+ K +++ +PV + Sbjct: 107 IFPALHGTFGEDGAIQGLFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYF 166 Query: 118 TRAEFEKGLSDKQ--LAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE 175 R+E L D Q L + LG P+IVKP+ GSS+G+SKV L AL +A +D+ Sbjct: 167 YRSE----LKDLQSVLKKCEKLGYPLIVKPANLGSSIGISKVKDTLELTKALEVASNYDK 222 Query: 176 EVLIEKWLSGP-EFTVAILG----------EEILPSIRIQPSGTFY--DYEAKYLSDETQ 222 ++++EK L+ E VA+LG EE + + I G Y + K S E Q Sbjct: 223 KIIVEKCLTDHREINVAVLGDQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQ 282 Query: 223 -YFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHS 281 PA L + L +++ + G RID +L +D + Y+ E NT PG + Sbjct: 283 KKKLPADLSKEVHNKICQLAKESFKAIDATGVSRIDFLLKND-EVYVNEINTLPGSIAFY 341 Query: 282 LVPMAARQAGMSFSQLVVRILELA 305 L + G+SF L+ ++LE+A Sbjct: 342 LFEV----EGLSFKDLLTKLLEIA 361 >UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R862_9FIRM Length = 392 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 90/268 (33%), Positives = 134/268 (50%), Gaps = 20/268 (7%) Query: 51 KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLP 110 K + F VF LHG GEDGT QG L + +PY G V+ A+ DK+ K + + +GLP Sbjct: 106 KEISFDMVFPILHGTHGEDGTFQGYLSTLHIPYIGCSVLGGAIGQDKIIMKQILEDSGLP 165 Query: 111 VAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLA 170 VAPW T K L D + LG P+IVKP+ GSS+G++KV E L A+ A Sbjct: 166 VAPWFYWT---LLKPLDDTFFRKAERLGYPLIVKPANLGSSIGVAKVENEVELHRAMIEA 222 Query: 171 FQHDEEVLIEKWLSG-PEFTVAILGEEILPSI----RIQPSGTFYDYEAKYLSDE----- 220 +Q+D V+IEK + E A+LG+E + S Y KY+ E Sbjct: 223 YQYDGRVVIEKAIEHVQEINCAVLGDEQTCEASVLEEVLSSKDILSYADKYVCGEGVKGI 282 Query: 221 --TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ-FYLLEANTSPGM 277 T+ PA ++ +Q L + + L G GRID + + + + Y+ E NT PG Sbjct: 283 VNTRRCIPARIDEELALEIQTLAKECFRCLCASGTGRIDFLYNRETKDLYINEINTIPG- 341 Query: 278 TSHSLVPMAARQAGMSFSQLVVRILELA 305 SL ++ + F +L+ R++++A Sbjct: 342 ---SLAFYLWEKSNLPFPKLIDRLVQIA 366 >UniRef50_A9BI46 D-alanine--D-alanine ligase n=1 Tax=Petrotoga mobilis SJ95 RepID=DDL_PETMO Length = 298 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 23/305 (7%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 I ++ GG S ERE+SL S V + G +D + D K ++ F +HG Sbjct: 3 IPIITGGKSKEREISLTSAKNVFNSISNLGYKPVILDLIDDDFIN-KIQNYKFAFNVVHG 61 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG L +LE++G+ YT S + DK L++ ++ + + Sbjct: 62 DYGEDGRLPSLLEILGIDYTCSNPETCIATYDKFIFYSLFKN-------YIQMPQT---- 110 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 L++K + + P I+KP + GSS G+ + EN + L + +EVL+++++ Sbjct: 111 TLTNKLI--LPPFEYPFIIKPRKSGSSKGVYIIHNENEYKFYLEKDLKEFQEVLVQEYIK 168 Query: 185 GPEFTVAIL--GEE--ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE--ANLQ 238 G E T++ + EE +LP + I P FYDYEAKY + T+ L + ++ + Sbjct: 169 GREITISYIQKNEEFILLPILEIIPKKEFYDYEAKYTNGLTE--LKPQLNSPEKIIQKIN 226 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + TL K RID +L D + Y+LE NT PG+T S +P +A AG+SF +L+ Sbjct: 227 EIGNHVMQTLTFKDMFRIDAIL-KDDEVYVLEINTVPGLTELSDLPTSALAAGISFDELI 285 Query: 299 VRILE 303 I++ Sbjct: 286 NIIIK 290 >UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteobacteria RepID=DDL_VIBC3 Length = 329 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 146/325 (44%), Gaps = 31/325 (9%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLR-------------------EGGIDAYPVDPKEV 45 I +L GG S+E E+SL S + L E G Y +D Sbjct: 6 ILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVY-LDTNSA 64 Query: 46 DVTQLK-SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLW 104 + K S V +HG GE G +Q MLEL G+PY G G ASA S +K+ SKL + Sbjct: 65 TLNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWY 124 Query: 105 QGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ 164 +P P++ LT+ DK G + VK +R+GSSVG KV E+ + Sbjct: 125 DALDIPNTPYLFLTQN--TPSSIDKAKQAFGHWG-SIFVKAARQGSSVGCYKVTTEDQIA 181 Query: 165 DALRLAFQHDEEVLIEKWLSGPEFTVA---ILGEEIL--PSIRIQPSGTFYDYEAKYLSD 219 A+ AF E+VL+E+ + E V+ + G+ + P I P GTFY YE KY ++ Sbjct: 182 PAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSAN 241 Query: 220 ET--QYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 L + +Q + + + + RID L +GQ YL E NT PGM Sbjct: 242 SHARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQEGQIYLNEVNTFPGM 301 Query: 278 TSHSLVPMAARQAGMSFSQLVVRIL 302 T S+ P G FS+ + + + Sbjct: 302 TPISMFPKMLEHNGHRFSEFLAQCV 326 >UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermaceae RepID=Q2S0H9_SALRD Length = 434 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/279 (32%), Positives = 143/279 (51%), Gaps = 36/279 (12%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 + + LHG GE+G +QG+ E +PYT +GV SAL MDK+ SK + + AG+PV +VAL Sbjct: 128 MLLGLHGGPGENGGVQGLCETFNVPYTSAGVFGSALGMDKVMSKRVCRQAGIPVVDFVAL 187 Query: 118 TRAEFEKGLSDKQLAEISA-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 E+ G L E A L P++VKP+R GSS+G+++V L A+ A ++D++ Sbjct: 188 REGEW-AGREAAALDECEATLDYPLVVKPARCGSSIGIAQVNTRAELDAAIEDALRYDDK 246 Query: 177 VLIEKWLSG-PEFTVAILGE--EILPSIRIQPSGTFYD----YEAKYLSDETQ------- 222 V++EK + E ++LG+ E PS+ +P + D ++ KY+ ++ + Sbjct: 247 VVVEKAVEALREINCSVLGDGHEATPSVLEEPVPSDDDAVLTFQDKYMREDGEAAKAEGG 306 Query: 223 ---------------YFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQF 266 PA L + +Q L ++ + C G RID M+D S G+ Sbjct: 307 TKSAESSPEGMAAQDRIVPANLSDERTETIQDLAVRIFHQFECAGVVRIDFMIDESTGRV 366 Query: 267 YLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 Y E NT PG S L +G+SF LV R++ +A Sbjct: 367 YFNEINTIPGSFSFYL----WEPSGVSFDALVDRLVTIA 401 >UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes RepID=D2LR31_BACS4 Length = 404 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 104/370 (28%), Positives = 168/370 (45%), Gaps = 70/370 (18%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD-PKE---------VDVTQL 50 M ++AV+ GG S E EVS+ S + + E + PV KE +D+ + Sbjct: 8 MRTRVAVIFGGMSVEHEVSVISALQAIQNMDESRYEIIPVYISKEGAWYTGDTLLDIEEY 67 Query: 51 KSMG----------------------------FQKVFIA--------LHGRGGEDGTLQG 74 K++ F K +I +HG EDG LQG Sbjct: 68 KNLKGLLAKSQRIQLLREGDNRVIINKEPKPKFGKAYINEIDVAFPIVHGTFAEDGVLQG 127 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 LEL+GLPY G V++S+ MDK+ K +++ +GLP+ +V ++ + D+ + ++ Sbjct: 128 YLELLGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYVWFYSTKWNED-QDELVKKV 186 Query: 135 SA-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAI 192 L PVIVKP+ GSSVG+SK + L++A+ LA Q +++IEK + E ++ Sbjct: 187 EGKLQYPVIVKPANLGSSVGISKAANVDELEEAVELASQFANKIVIEKMVQNMTEINCSV 246 Query: 193 LGE----EILPSIRIQPSGTFYDYEAKYLS------------DETQYFCPAGLEASQEAN 236 LG+ E ++ + YE KY + T PA + + Sbjct: 247 LGDYEAAEASVCEQVLGNDEILSYEDKYAGGGSKGGGASKGMESTNRIIPADISEEKTKE 306 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 +Q L + A+ LGC G RID ++D+D ++ E NT PG S L G + Sbjct: 307 IQELAVAAFQVLGCSGVSRIDFLIDNDTNNVFINEINTIPGSLSFYL----WEPTGKPYK 362 Query: 296 QLVVRILELA 305 +L +++LA Sbjct: 363 ELTNDLIQLA 372 >UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZZ06_9SPHI Length = 394 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/260 (33%), Positives = 132/260 (50%), Gaps = 17/260 (6%) Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F LHG GEDG LQG+ ELMG+PY G V++SA+ MDK+ K++ + +GLPV +V Sbjct: 105 FPVLHGSFGEDGALQGLFELMGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVKYVWFY 164 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 +++ + LG PVIVKP+ GSSVG+ K L++A+ A ++L Sbjct: 165 SKNWQQDTTSHIGKVEQTLGYPVIVKPANLGSSVGIKKAANREELEEAIDYAAGFSHKLL 224 Query: 179 IEKWLSG-PEFTVAILG--EEILPSIRIQP--SGTFYDYEAKYLS-------DETQYFCP 226 +E+ + E ++LG E S +P SG Y+ KY++ T+ P Sbjct: 225 VEQTIVDLKEINCSVLGNYENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMSGTKRKLP 284 Query: 227 AGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPM 285 A + +Q L + + LGC G RID +LD + + Y+ E NT PG S L Sbjct: 285 AEIPTEMSDKIQQLAVDTFQVLGCAGVSRIDFLLDQATNEVYVNEINTIPGSLSFYLWEA 344 Query: 286 AARQAGMSFSQLVVRILELA 305 + +F QLV +++ A Sbjct: 345 TDK----NFGQLVNDLIDTA 360 >UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae RepID=DDL_VIBVY Length = 331 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 105/333 (31%), Positives = 152/333 (45%), Gaps = 35/333 (10%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLA--GLREGGIDAYPVDPK--------------E 44 M + +L GG S+E E+SL S + GL E ++ V+ K + Sbjct: 1 MMRNVLLLCGGGSSEHEISLLSSEYLQQQLGLIEN-VNVLKVEIKNEGWFDQKERLVYLD 59 Query: 45 VDVTQLKSMGFQKV----FI--ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKL 98 + +KS F + FI +HG GE G +Q + EL G+PY G G AS+ S +K+ Sbjct: 60 IHTKSVKSDEFNESIDIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKI 119 Query: 99 RSKLLWQGAGLPVAPWVALTRAEFEKG-LSDKQLAEISALGLPVIVKPSREGSSVGMSKV 157 SKL + G+P P++ LT E LS + + L VK +R+GSSVG V Sbjct: 120 TSKLWYDAIGIPNTPYLFLTENNEESHQLSREAFDKWGKL----FVKAARQGSSVGCYSV 175 Query: 158 VAENALQDALRLAFQHDEEVLIEKWLSGPEFTVA---ILGEEIL--PSIRIQPSGTFYDY 212 L DA+ AF +VL+EK + E V+ + G+ + P I P G FY Y Sbjct: 176 TNIEQLSDAIDKAFGFSHQVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSY 235 Query: 213 EAKYL--SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLE 270 + KY S L Q A +Q K + + + RID L S+G+ YL E Sbjct: 236 DEKYSAGSHSITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLTSEGEIYLNE 295 Query: 271 ANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 NT PGMT S+ P + G F + + +E Sbjct: 296 VNTFPGMTKISMFPKMLQHNGHKFHEFLADCIE 328 >UniRef50_Q5G7J6 Vancomycin resistance protein C1 (Fragment) n=1 Tax=Enterococcus gallinarum RepID=Q5G7J6_ENTGA Length = 235 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/216 (37%), Positives = 110/216 (50%), Gaps = 6/216 (2%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 +F LHG+ GEDG +QG+LELM LPY G V ASAL M+K L G+ AP + L Sbjct: 23 LFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPTLLL 82 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 +R E + D+ I G P+ +KP+ GSS G++KV + AL AL AF + V Sbjct: 83 SRYENDPATIDR---FIQDHGFPIFIKPNEAGSSKGITKVTDKTALHSALTTAFAYGSTV 139 Query: 178 LIEKWLSGPEFTVAILGEEILP---SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 LI+K ++G E ILG E L I F+D+E KY PA L + E Sbjct: 140 LIQKAIAGIEIGCGILGNEQLTIGACDAISLVDGFFDFEEKYQLISATITVPAPLPLALE 199 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLE 270 + ++ + LG G RID + + G YL E Sbjct: 200 SQIKEQAQLLYRNLGLTGLARIDFFVTNQGAIYLNE 235 >UniRef50_P55650 Uncharacterized protein y4sG n=3 Tax=Rhizobiales RepID=Y4SG_RHISN Length = 336 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 18/240 (7%) Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 MLE+ G+PYTGS + L+ DK+ SK L + +G+P + + R Sbjct: 96 AMLEMAGVPYTGSSPLGHGLTDDKVISKTLMRDSGVPTPNFSIMRRGT----------ES 145 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF-QHDEEVLIEKWLSGPEFTVAI 192 L PV+VKP E +S G+ V LQ A+++ ++ ++ L+E+++ G E VA+ Sbjct: 146 TDDLRFPVVVKPRHEDNSFGLQLVHEPAQLQQAVKMIVTKYAQDALVEEYIDGREIHVAL 205 Query: 193 LGE---EILPSIRIQ---PSGTFYDYEAKYLSD-ETQYFCPAGLEASQEANLQALVLKAW 245 LG E+LP + + +EAKYL+ + CPA +E+ L+ + + + Sbjct: 206 LGNQEVEVLPMVEFELGEHEAPLLTWEAKYLAAVQPPKTCPAKIESKLATLLRDISVATF 265 Query: 246 TTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C+ + R+D+ LD GQ ++LE N+ PG+++HS +AA AG S+S L+ IL++A Sbjct: 266 RACQCRDYARVDLRLDRSGQPFVLEINSMPGLSTHSAYVLAAMTAGHSYSSLINGILDVA 325 >UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AVY8_9BACE Length = 398 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 104/369 (28%), Positives = 163/369 (44%), Gaps = 72/369 (19%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------DP 42 M ++A++ GG S E EVS+ SG + D PV Sbjct: 6 MKTRVAMMFGGKSVEHEVSVISGIQAYMSMDTDKYDVIPVYMTKNNEMYIGDSIGDIESY 65 Query: 43 KEVDVTQLKS---------------------------MGFQKVFIALHGRGGEDGTLQGM 75 K +D KS +G F +HG EDG QG Sbjct: 66 KNIDELLKKSQRVIMINEDGRVKLVQYPVKKLGKNVEVGIDVAFPVVHGTNVEDGGFQGY 125 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAP---WVALTRAEFEKGLSDKQLA 132 L+ MG+P+ G V ASA+ MDK +KL+ + + +PV + A+ E ++D + Sbjct: 126 LKTMGIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDARLYTLSDYADMESMMNDIE-- 183 Query: 133 EISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVA 191 + G PVIVKP GSSVG+S + L +++ AF++ +VL+E ++ E + Sbjct: 184 --NVFGYPVIVKPVNLGSSVGISVAKSRVELANSVDDAFRYATKVLVEHAITNLREINCS 241 Query: 192 ILGEE--ILPSIRIQPSGT--FYDYEAKYLSD----------ETQYFCPAGLEASQEANL 237 +LG+E + S +P T YE KY+S+ PA L + + Sbjct: 242 VLGDENDAIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMASVSRRIPAELTPEKREEV 301 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 + L ++++ LGC G RID M+D+D + Y E NT PG SL G+ + + Sbjct: 302 RELAVRSFKALGCNGVSRIDFMIDADTDKLYFNEINTIPG----SLAFYLWEPVGVPYKE 357 Query: 297 LVVRILELA 305 L+ R+++LA Sbjct: 358 LLDRMIQLA 366 >UniRef50_A6LJ57 D-alanine--D-alanine ligase n=2 Tax=Thermotogaceae RepID=A6LJ57_THEM4 Length = 310 Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/303 (26%), Positives = 145/303 (47%), Gaps = 30/303 (9%) Query: 21 NSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGT---LQGMLE 77 N ++ +++ Y + D L+ + L +GG++ + +L+ Sbjct: 13 NEEKKMINAIKDAISKKYKCEIVRFDEDFLRKINKYDFVFNLSNKGGKEVKQVHVPSVLD 72 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 +G+PYT S A+ +DK+ +K++ + +P + + E + K Sbjct: 73 FLGIPYTSSNTFTHAICLDKITTKIIMKQYNIPTPDFYVVDVGEIPNYIDGK-------- 124 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ-HDE---EVLIEKWLSGPEFTVAIL 193 IVKP REGS+ G++K + L+D + + HDE L+EK++ G EF+V ++ Sbjct: 125 ---YIVKPPREGSAKGITKDSIVDNLEDLKKQVKKIHDEFSQPALVEKFIDGREFSVGVI 181 Query: 194 GE---EILPSIRIQPSG------TFYDYEAK-YLSDETQYFCPAGLEASQEANLQALVLK 243 G E+LP + I S FY Y K Y ++T+Y CPA L+ E ++ K Sbjct: 182 GNKKPEVLPILEIDFSSLPKELERFYSYRVKHYYGEQTRYICPANLDVDLEKKIKYYAQK 241 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTS-HSLVPMAARQAGMSFSQLVVRIL 302 + L + + R+D+ + G+ Y LE N+ P + +S + A+ AG + +LV++IL Sbjct: 242 LFRVLNLRDYARMDLRIKG-GEIYFLEVNSMPQLVPVYSDITKMAKAAGCDYDKLVLKIL 300 Query: 303 ELA 305 E++ Sbjct: 301 EIS 303 >UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacillales RepID=DDL_LEUMM Length = 377 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 103/352 (29%), Positives = 164/352 (46%), Gaps = 52/352 (14%) Query: 1 MTDK-IAVLLGGTSAEREVSLNSGAAVLAGLREGG------------------------- 34 MT K +A++ GG S+E +VS S + G Sbjct: 1 MTKKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKIL 60 Query: 35 --------IDAY--PVDPKE--VDVTQLKSMG-FQKVFIALHGRGGEDGTLQGMLELMGL 81 +DA+ VD + + LKS G F F +HG GEDGTLQG+ +L+ Sbjct: 61 ALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDK 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY G+ + A+S DK +K L G+ ++ + DK +AE LG V Sbjct: 121 PYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAE---LGNIV 177 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGP-EFTVAILGEEI--- 197 VK + +GSSVG+S+V +AL +FQ+D +VLIE+ ++G E V ++G + Sbjct: 178 FVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLV 237 Query: 198 ----LPSIRIQPSGT-FYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCK 251 ++ Q SG +YDY K++ + +F PA L ++ + L A+ L + Sbjct: 238 SEIGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLR 297 Query: 252 GWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 G R+D +LD + YL E NT PG T+ SL + ++ ++LV +++ Sbjct: 298 GEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacte... 443 e-123 UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria Re... 432 e-120 UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella... 427 e-118 UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria Rep... 398 e-109 UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacte... 393 e-108 UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria Re... 392 e-107 UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteob... 390 e-107 UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular or... 389 e-107 UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidami... 389 e-107 UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 388 e-106 UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteo... 387 e-106 UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2... 387 e-106 UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia ... 386 e-106 UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=... 386 e-106 UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteob... 385 e-105 UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromon... 383 e-105 UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria Re... 383 e-105 UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aph... 382 e-105 UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aph... 382 e-105 UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobaci... 382 e-104 UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteri... 379 e-104 UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacter... 379 e-104 UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteob... 378 e-104 UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobact... 378 e-103 UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine s... 377 e-103 UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia R... 377 e-103 UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacte... 376 e-103 UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas... 376 e-103 UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus S... 375 e-103 UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Ta... 375 e-103 UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivib... 375 e-102 UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales... 375 e-102 UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacter... 374 e-102 UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia R... 374 e-102 UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteob... 372 e-101 UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=... 370 e-101 UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella ... 369 e-101 UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas ... 368 e-101 UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacil... 368 e-101 UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillu... 368 e-100 UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacter... 366 e-100 UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteri... 365 e-100 UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n... 365 e-100 UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci R... 365 1e-99 UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ell... 365 1e-99 UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria Rep... 365 1e-99 UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium oc... 365 2e-99 UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales ... 363 6e-99 UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 362 1e-98 UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales R... 362 1e-98 UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Te... 361 1e-98 UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteob... 361 1e-98 UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermoth... 361 2e-98 UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacte... 361 2e-98 UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 361 2e-98 UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae... 360 5e-98 UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine syn... 359 6e-98 UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus... 358 1e-97 UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizo... 357 3e-97 UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter ... 357 4e-97 UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces ... 356 6e-97 UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum... 355 8e-97 UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi ... 355 1e-96 UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae Re... 355 1e-96 UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 354 2e-96 UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methyl... 353 3e-96 UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachl... 353 3e-96 UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcu... 353 4e-96 UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium Rep... 353 5e-96 UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycet... 353 6e-96 UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aerom... 352 8e-96 UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidip... 352 9e-96 UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine syn... 352 9e-96 UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio... 350 3e-95 UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonel... 350 3e-95 UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepI... 350 4e-95 UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerot... 349 6e-95 UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus... 349 7e-95 UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 348 1e-94 UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli Re... 348 1e-94 UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibr... 348 2e-94 UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular or... 347 3e-94 UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bron... 347 3e-94 UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibri... 347 3e-94 UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clost... 346 5e-94 UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomona... 346 7e-94 UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetell... 345 8e-94 UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium c... 345 1e-93 UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular o... 345 2e-93 UniRef50_A6CDT2 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 344 2e-93 UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetal... 344 2e-93 UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria Rep... 344 2e-93 UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria ... 344 2e-93 UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=... 344 3e-93 UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteo... 344 3e-93 UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia ... 343 3e-93 UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteo... 343 3e-93 UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrob... 343 4e-93 UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 343 5e-93 UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacte... 343 5e-93 UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4... 343 6e-93 UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 T... 343 6e-93 UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C... 342 7e-93 UniRef50_UPI0001AF4ABE D-alanine--D-alanine ligase n=1 Tax=Salmo... 342 8e-93 UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacter... 342 1e-92 UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecali... 341 2e-92 UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerof... 341 2e-92 UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes R... 340 3e-92 UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora ... 340 3e-92 UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundu... 340 3e-92 UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospor... 340 4e-92 UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID... 340 4e-92 UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella... 338 1e-91 UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium... 338 1e-91 UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria R... 338 2e-91 UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema Re... 338 2e-91 UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus... 337 3e-91 UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes R... 336 4e-91 UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp... 336 4e-91 UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria Re... 336 5e-91 UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium ... 336 7e-91 UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bactero... 335 9e-91 UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified... 335 9e-91 UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrob... 335 1e-90 UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 335 2e-90 UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogace... 334 2e-90 UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister in... 333 3e-90 UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycet... 333 5e-90 UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobact... 333 5e-90 UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcale... 332 7e-90 UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevib... 331 1e-89 UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga ole... 331 1e-89 UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdema... 331 1e-89 UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteob... 331 2e-89 UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus P... 331 2e-89 UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collins... 331 2e-89 UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN 330 3e-89 UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacill... 330 3e-89 UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteob... 330 4e-89 UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiale... 330 5e-89 UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pa... 329 6e-89 UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranu... 329 7e-89 UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella R... 328 1e-88 UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovi... 328 1e-88 UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis v... 328 1e-88 UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera ... 328 2e-88 UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria Rep... 328 2e-88 UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfov... 327 2e-88 UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostri... 327 3e-88 UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax... 326 6e-88 UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacill... 326 6e-88 UniRef50_C3WFS8 D-alanine-D-alanine ligase n=6 Tax=Fusobacterium... 326 6e-88 UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacte... 325 1e-87 UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizob... 325 1e-87 UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirill... 325 1e-87 UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsiea... 325 1e-87 UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collins... 324 3e-87 UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiace... 323 4e-87 UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocyst... 323 4e-87 UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira ... 323 4e-87 UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira R... 323 7e-87 UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia Re... 322 1e-86 UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirill... 322 1e-86 UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacil... 322 1e-86 UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatron... 322 1e-86 UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermob... 321 2e-86 UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostri... 320 5e-86 UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root Re... 319 8e-86 UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacter... 319 1e-85 UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacill... 319 1e-85 UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistip... 318 1e-85 UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 318 2e-85 UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiace... 318 2e-85 UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobiu... 318 2e-85 UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacte... 315 9e-85 UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriac... 315 1e-84 UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 314 2e-84 UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein... 313 4e-84 UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia Re... 313 7e-84 UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaprot... 312 8e-84 UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla ... 311 2e-83 UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9... 310 4e-83 UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacter... 310 5e-83 UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia m... 310 6e-83 UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira b... 309 6e-83 UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter s... 309 7e-83 UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaero... 309 8e-83 UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimo... 308 1e-82 UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexi... 308 2e-82 UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomyceta... 307 2e-82 UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus ... 307 2e-82 UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified E... 307 3e-82 UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidete... 306 5e-82 UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cell... 305 1e-81 UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales ... 305 2e-81 UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes Re... 304 2e-81 UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria Re... 304 2e-81 UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteri... 304 2e-81 UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=... 304 3e-81 UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 303 5e-81 UniRef50_A9N8L3 D-alanine--D-alanine ligase n=6 Tax=Coxiella bur... 302 1e-80 UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coproco... 302 1e-80 UniRef50_Q6A5C1 D-alanine--D-alanine ligase B n=4 Tax=Propioniba... 301 2e-80 UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabact... 301 2e-80 UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteria... 301 2e-80 UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomona... 301 2e-80 UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma ce... 300 4e-80 UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=D... 300 5e-80 UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomyceta... 300 5e-80 UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworth... 300 5e-80 UniRef50_B9KHS3 D-alanine--D-alanine ligase n=5 Tax=Anaplasma ma... 299 8e-80 UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces ... 299 9e-80 UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine s... 298 1e-79 UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacte... 298 1e-79 UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostoc... 297 3e-79 UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 297 3e-79 UniRef50_Q8RDQ4 D-alanine--D-alanine ligase n=10 Tax=Fusobacteri... 297 3e-79 UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriac... 297 4e-79 UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Strep... 296 5e-79 UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicro... 296 8e-79 UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococ... 295 9e-79 UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis... 295 1e-78 UniRef50_D0RN14 D-alanine--D-alanine ligase B (D-alanylalanine s... 295 2e-78 UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacill... 294 3e-78 UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacill... 294 3e-78 UniRef50_B0MP08 Putative uncharacterized protein n=1 Tax=Eubacte... 293 4e-78 UniRef50_Q60GK8 D-alanyl-D-alanine ligase n=2 Tax=Streptomyces R... 293 4e-78 UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bactero... 293 6e-78 UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 293 6e-78 UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilu... 292 1e-77 UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q87... 290 4e-77 UniRef50_B1JC77 D-alanine--D-alanine ligase n=2 Tax=Pseudomonas ... 290 5e-77 UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma w... 286 8e-76 UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothr... 286 9e-76 UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=... 286 9e-76 UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Rumin... 285 2e-75 UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT 284 3e-75 UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 283 8e-75 UniRef50_C5C6M9 D-alanine--D-alanine ligase n=4 Tax=Actinomyceta... 281 2e-74 UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas... 280 4e-74 UniRef50_D2MND8 D-ala D-ala ligase N-terminal domain protein n=2... 280 5e-74 UniRef50_C0BG03 D-alanine--D-alanine ligase n=1 Tax=Flavobacteri... 280 5e-74 UniRef50_Q821S4 D-alanine--D-alanine ligase n=15 Tax=Chlamydiace... 279 6e-74 UniRef50_B0RDP5 D-alanine--D-alanine ligase B n=4 Tax=Actinobact... 279 7e-74 UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteo... 278 2e-73 UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermac... 275 1e-72 UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae... 272 1e-71 UniRef50_C0VTV5 D-alanyl-alanine synthetase A n=2 Tax=Corynebact... 268 2e-70 UniRef50_C8W9G2 D-alanine--D-alanine ligase n=2 Tax=Atopobium Re... 267 5e-70 UniRef50_A1SMF1 D-alanine--D-alanine ligase n=1 Tax=Nocardioides... 266 5e-70 Sequences not found previously or not previously below threshold: >UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacteria RepID=DDL_YERP3 Length = 306 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 222/306 (72%), Positives = 252/306 (82%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M +K+AVLLGGTSAEREVSL SG AVLAGL+E GIDAY VD K+ VTQLK GF KVFI Sbjct: 1 MAEKVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVDTKDFPVTQLKEQGFDKVFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGRGGEDGTLQG+LE + LPYTGSGVMASAL+MDKLR+KL+WQ GLP++P+VAL R Sbjct: 61 ALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQ 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 +FE ++ +A ++ LGLP+IVKPS EGSSVGMSKV + LQ AL AFQHD +VLIE Sbjct: 121 QFETLSPEELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIE 180 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 KWLSGPEFTVAILG+E+LPSIRIQP G FYDY+AKYLSD+TQYFCP+GL E L AL Sbjct: 181 KWLSGPEFTVAILGDEVLPSIRIQPPGVFYDYDAKYLSDKTQYFCPSGLSDESEQQLAAL 240 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L+A+ L C GWGR+DVM D DG FYLLE NTSPGMTSHSLVPMAARQ G+SFSQLV R Sbjct: 241 ALQAYHALDCSGWGRVDVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVAR 300 Query: 301 ILELAD 306 IL LAD Sbjct: 301 ILMLAD 306 >UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria RepID=DDL_HAMD5 Length = 320 Score = 432 bits (1113), Expect = e-120, Method: Composition-based stats. Identities = 196/319 (61%), Positives = 241/319 (75%), Gaps = 14/319 (4%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M +K+AVLLGGTS+ER++SL SG AV+AGLRE GIDA P+D K VT+LK GF K FI Sbjct: 1 MPEKVAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPIDTKNFLVTELKEKGFTKAFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGR GEDG LQ +LE + +PYTGSGVMASAL+MDK RSK+++QGAGLPV+P+VAL R Sbjct: 61 ALHGRDGEDGHLQAVLEFLKIPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNRE 120 Query: 121 EFEKG--------------LSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDA 166 + +S+K + I+ LGLP+IVKPSREGSS GM+KV + L DA Sbjct: 121 QIWPNVTQNTSNDLLLNNRISNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQLDDA 180 Query: 167 LRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCP 226 L+ A+ +DEE+L+EKW G E TVAILG+ +LPSIRIQ S FYDY+AKY+SD+TQYFCP Sbjct: 181 LKKAWHYDEEILVEKWHFGTELTVAILGDTVLPSIRIQVSDIFYDYQAKYVSDKTQYFCP 240 Query: 227 AGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMA 286 +GL+ QE L L + A+ LGC GWGR+DVMLD +G FYL+E NT+PGMT HSL PMA Sbjct: 241 SGLKQEQEKQLATLSMNAYRALGCDGWGRVDVMLDDEGHFYLMEINTAPGMTDHSLFPMA 300 Query: 287 ARQAGMSFSQLVVRILELA 305 ARQAG SFS+LV +IL LA Sbjct: 301 ARQAGFSFSELVCKILSLA 319 >UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RepID=B5FI74_SALDC Length = 285 Score = 427 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 258/306 (84%), Positives = 273/306 (89%), Gaps = 21/306 (6%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M DKIAVLLGGTSAER+VSLNSGAAVLAGLREGGIDA+PVDP+EVDV QLK+MGFQKVFI Sbjct: 1 MADKIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGR GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA Sbjct: 61 ALHGR---------------------GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 99 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 EFEKGLS++Q A ISALGLP+IVKPSREGSSVGM+KVV ENALQ AL LAFQHD+E+LIE Sbjct: 100 EFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIE 159 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 KWL GPEFTVAI+GEEILPSIRIQP+GTFYDYEAKYLSDETQYFCPAGL+ASQEA LQ+L Sbjct: 160 KWLCGPEFTVAIVGEEILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSL 219 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 VL+AW LGC GWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR Sbjct: 220 VLQAWKALGCTGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 279 Query: 301 ILELAD 306 ILELAD Sbjct: 280 ILELAD 285 >UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria RepID=DDL_PELTS Length = 318 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 189/309 (61%), Gaps = 4/309 (1%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 MT K+ VL+GG S+EREVSL +G AV L+ A +D V ++K FI Sbjct: 1 MTLKVGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKEERIDLAFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGR GEDGT+QG+LE++ +PYTGSGV+ASAL+MDK +K + Q GLP P++ + + Sbjct: 61 ALHGRYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKK 120 Query: 121 E-FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 E ++ L +GLP++VK +GS++GMS V E + AL LA+ +D L+ Sbjct: 121 EALKESLQACSERICREMGLPLVVKAPTQGSTIGMSFVHKEEDMAGALELAYDYDPVALV 180 Query: 180 EKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 E+++ G E T +ILG E LP I I + YDY+AKY + + + P + Q+ Sbjct: 181 EQFIRGTEVTASILGNEEPVALPLIEIVSATGVYDYKAKYTAGMSDHIIPPRIPEKQQNA 240 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 ++ L + + +LGC+G R+D ++D G ++LE NT PGMT+ SL P AAR AG+ F Sbjct: 241 IKKLAVSTFKSLGCRGLARVDFIVDKQGNPFILEVNTIPGMTATSLFPDAARAAGIEFPD 300 Query: 297 LVVRILELA 305 L+ +++ELA Sbjct: 301 LIEKLVELA 309 >UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacteria RepID=DDL_PSYWF Length = 332 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 163/301 (54%), Positives = 204/301 (67%), Gaps = 11/301 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AV+ GG S ER VSL+SG AVL L+ GIDA DPK+ DVT+LK + +VF LH Sbjct: 37 KVAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFDPKDQDVTELK--NYDRVFNVLH 94 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDG LQG+L+ +GLP TGSGV+ASA+ MDK+R+K LW G GL AP+ L Sbjct: 95 GRGGEDGQLQGLLDWLGLPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVL------ 148 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 G ++ LGLP+IVKP EGSS+GMSKV + L A +A + V+ EKW+ Sbjct: 149 -GADTDWQQIVNTLGLPLIVKPVHEGSSIGMSKVNTLDELPKAYEVAAGCGDVVMAEKWI 207 Query: 184 SGPEFTVAILGEEILPSIRIQPSG--TFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 +G EFT+ I+ +E P IR+QP+ FYDYEAKY ++TQY P GL A +EA+LQAL Sbjct: 208 TGREFTIVIIDDEAYPVIRLQPADISNFYDYEAKYNRNDTQYHIPCGLSAEEEAHLQALS 267 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L A+ + KGWGRID M D +G F+LLE NT PGMTSHSLVPMAA+ GM+F QL I Sbjct: 268 LAAFKAVDAKGWGRIDAMQDEEGNFWLLEINTVPGMTSHSLVPMAAKARGMNFEQLCWHI 327 Query: 302 L 302 L Sbjct: 328 L 328 >UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria RepID=DDL_GEOLS Length = 313 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 135/300 (45%), Positives = 181/300 (60%), Gaps = 8/300 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 +I VL+GG SAER+VSL SG AV L G D+ +D + L+ FIAL Sbjct: 9 KRIGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILREEKIDLAFIAL 68 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGR GEDG +QG+LELM +PYTGSGV+ASAL+M KL SK + AGL + P+ + + Sbjct: 69 HGRYGEDGCIQGLLELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQG-- 126 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 D+ AE GLPV+VKP +EGSSVG++ V LQ AL AF++D VL+EK+ Sbjct: 127 -----DRCNAEQLPFGLPVVVKPVQEGSSVGVTIVKKPEDLQAALDEAFRYDTLVLVEKY 181 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E V IL + + +I I P FYD+EAKY ++ PA L +Q L Sbjct: 182 IKGQEVQVGILANQPIGAIEIVPKNEFYDFEAKYSDGMAEHIFPARLAEPLYQKVQQQGL 241 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQ-AGMSFSQLVVRI 301 +A LGC G+ R+D ++ +G YLLE NT PGMT+ SL+P A++ AG+SF LV +I Sbjct: 242 QAHQALGCDGYCRVDFLVTENGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEALVEQI 301 >UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteobacteria RepID=DDL_THICR Length = 313 Score = 390 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 150/301 (49%), Positives = 207/301 (68%), Gaps = 7/301 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVL+GG +AER+VSL SGA VL L+ G+DA D V + + + FIALH Sbjct: 17 KVAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVTSVAQLVEIAQKYDRAFIALH 76 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +Q +L+ + LPYTGSG+ ASAL+MDKLR+K LW+G GLP ++ ++ + Sbjct: 77 GRWGEDGGVQAVLDSLALPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPL 136 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 E L PVIVKPS EGSS+GM KV +ALQ+A+ A Q+D E+LIE+W+ Sbjct: 137 D-------VETFDLTFPVIVKPSHEGSSIGMRKVDTLDALQEAVDFAQQYDSEILIEQWI 189 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 +G EFT A+L E LP I+++ FYD++AKY S+ T+Y CP GLE ++E +QALVL+ Sbjct: 190 TGREFTCAVLDGEALPMIQLKTDHDFYDFDAKYQSNTTEYLCPCGLEIAEEKRIQALVLQ 249 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ +G + WGR+D+MLD Q +L+E NT PGMT HSLVPMAA+ +SFS+LV++++ Sbjct: 250 AFDAVGARHWGRVDLMLDDQNQPWLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVLKLIS 309 Query: 304 L 304 L Sbjct: 310 L 310 >UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular organisms RepID=DDL_RHOFD Length = 346 Score = 389 bits (999), Expect = e-107, Method: Composition-based stats. Identities = 153/307 (49%), Positives = 201/307 (65%), Gaps = 12/307 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVL+GG SAEREVSL SG VL L G+DA+ DP E D+ +LK GF FIALH Sbjct: 28 KVAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFDPAERDLAELKVEGFSHCFIALH 87 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDGT+QG LEL+G+PYTGSGVMAS++++DK+ +K +W+ GLP W + Sbjct: 88 GRFGEDGTVQGALELLGIPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEWRQVDS---- 143 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + +ALG P+IVKP REGS++G++KV A LA +HD VL E+++ Sbjct: 144 ---AAATSEAFAALGSPMIVKPDREGSTIGLTKVTQIEQCGAAYALAARHDAMVLCEQFV 200 Query: 184 SGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 G E T+ +LG LP IRI YDY+ KY +D TQY PA L A +EA++Q Sbjct: 201 KGDEVTIPLLGSGAGAHALPVIRIVAPDGNYDYQNKYFTDTTQYLVPANLPAGEEAHIQQ 260 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQ-FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 L LKA+ LGC+GW R+DVM+D+ + +LLE NTSPGMT HSLVPMAA+ AG+S+ L Sbjct: 261 LALKAYQVLGCRGWARVDVMIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALC 320 Query: 299 VRILELA 305 + +L A Sbjct: 321 LEVLRHA 327 >UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE55_9FIRM Length = 312 Score = 389 bits (999), Expect = e-107, Method: Composition-based stats. Identities = 128/310 (41%), Positives = 187/310 (60%), Gaps = 10/310 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDV-TQLKSMGFQKVFI 60 T +I V++GG S EREVSLN+G+A++ L+E G DA P+D +Q++ G + VF Sbjct: 4 TKRIGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDPSLFPSQIEDAGVKVVFN 63 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 A+HG GEDG LQ +LE++G+PYTGSGV++SA++M+K +K +++ G+ A + LT Sbjct: 64 AVHGLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTDK 123 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + + D I LG+P +VKP+ +GSS+G++ V E L AL AF + + VL E Sbjct: 124 DRQTAKQDI----IRKLGIPCVVKPAEQGSSIGVTIVKKEEDLDKALEEAFSYGKLVLAE 179 Query: 181 KWLSGPEFTVAILGEE-----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 + +G E ++ + +P + I+P FYDY KY T Y CPA + Sbjct: 180 AFFTGKEVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFDECLTK 239 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 LQ +KA+ LGC G R+D M+D++G F LE NT PGMT+ SLVP AA+ G+SF Sbjct: 240 ALQEEAVKAYKALGCSGVARVDEMVDAEGNFICLEVNTIPGMTATSLVPKAAKAMGLSFP 299 Query: 296 QLVVRILELA 305 L +ILE A Sbjct: 300 DLCEKILETA 309 >UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_HALHL Length = 304 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 158/302 (52%), Positives = 209/302 (69%), Gaps = 11/302 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL+GGTSAER++SL SG A+LA L+ G DA DP++ + L+ G+ VFIALH Sbjct: 12 RVAVLMGGTSAERDISLRSGGAILAALQRCGYDAEAYDPRDRALEGLR--GYDVVFIALH 69 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDGT+QG+L+L+G+PYTGSGV+ SAL MDK R K LWQG+GLP LT Sbjct: 70 GRGGEDGTVQGLLDLLGIPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLTGDRPV 129 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 +G PVIVKP+REGSS+GMS+V L +A R+A +D+ VL E W+ Sbjct: 130 LD---------EGVGYPVIVKPAREGSSLGMSRVEGPEELAEAYRVAAAYDDTVLAEAWV 180 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E+TVA+LG++ LPSIR++ F+DY AKY +++T + CP+GL +EA L AL + Sbjct: 181 EGEEYTVALLGDQALPSIRLETPHAFFDYAAKYQAEDTGHHCPSGLGPEEEAELGALCRE 240 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ G GWGR+DVM D+ G+++LLE NT PGMT HSLVP+AA QAG+ F +LV RIL Sbjct: 241 AFIASGGNGWGRVDVMRDTGGRWWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILG 300 Query: 304 LA 305 A Sbjct: 301 EA 302 >UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteobacteria RepID=DDL_XANAC Length = 318 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 160/303 (52%), Positives = 206/303 (67%), Gaps = 8/303 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVLLGGTS+EREVSLNSG VL LR G+DA PVD L + F +VF LH Sbjct: 18 RVAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLH 77 Query: 64 G--RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 G GGEDG +QG++E G+PYTGS V+ SALSMDK+R+K +W GL + L Sbjct: 78 GHNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAG- 136 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 ++ A +GLP+IVKP+ EGSSVG+S+V + L++A+ LA ++D +L+E+ Sbjct: 137 ---ASAEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGALLMEQ 193 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E TVA+LG+ LPSIRI P G +YDY AKY++D+TQY CP GLE EA ++ L Sbjct: 194 LIEGDELTVAVLGDTALPSIRIVPKGQWYDYNAKYIADDTQYLCP-GLEGEAEAQIRQLA 252 Query: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L A+ GC+GWGR+DVM D S GQ YLLE NT+PGMTSHSLVP AARQ G+ F LV R Sbjct: 253 LDAFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWR 312 Query: 301 ILE 303 +LE Sbjct: 313 VLE 315 >UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2RKQ9_ACIFE Length = 310 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 135/310 (43%), Positives = 189/310 (60%), Gaps = 10/310 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-EVDVTQLKSMGFQKVFI 60 D++AV++GG S EREVSLN+G A+L L+E G DA +D E V QLK+ G + VF Sbjct: 4 KDRVAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLDPEHIVDQLKASGARVVFN 63 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 A+HG GEDG LQG+LE++G+PYTGSGV+ASAL+MDK+ +K L+Q +P A + L + Sbjct: 64 AVHGLYGEDGRLQGILEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDK- 122 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 K D + + +G+P +VKP+ +GSS+G+ V E L DAL+ AFQ+ + VL E Sbjct: 123 ---KRDQDPKARILEEIGIPCVVKPATQGSSIGVVIVKDEKQLDDALQEAFQYGDHVLCE 179 Query: 181 KWLSGPEFTVAILGEE-----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 + +G E ++ E +P + I+P FYD+ KY T Y CPA +A Sbjct: 180 AFFTGKEVAAGVMMGEDGRAVPMPLVLIEPHVNFYDFHNKYTKGATTYTCPAPFDAETTR 239 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 LQ + + A+ LGC G R D+ML +G LE NT PGMT+ SL+P AA G+SF Sbjct: 240 RLQKIAVAAYEALGCSGVARTDLMLADNGDCIALEVNTIPGMTATSLIPKAAAAMGISFP 299 Query: 296 QLVVRILELA 305 L +IL+ A Sbjct: 300 DLCEKILKTA 309 >UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia RepID=DDL_THEP3 Length = 359 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 119/348 (34%), Positives = 176/348 (50%), Gaps = 46/348 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------DPKEVDVT 48 KIAVL GG S E EVSL S +++ L + + Y V D +++ Sbjct: 3 KKKIAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIETG 62 Query: 49 QLKSMG--------------------------FQKVFIALHGRGGEDGTLQGMLELMGLP 82 + + G VF LHG GEDGT+QG+LEL+ +P Sbjct: 63 EWEKEGIPAIMGASTKYRGIITFEDGENGFYPIDVVFPVLHGPNGEDGTIQGLLELLDMP 122 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y G+ V++SAL MDK+ +K +++ AGLP +V + E E + K +I LG P Sbjct: 123 YVGANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIK--KKIEHLGYPCF 180 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILP 199 VKP+ GSSVG++KV E L AL+LA ++D ++LIE+ + E ++LG E Sbjct: 181 VKPANLGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENPEASI 240 Query: 200 SIRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 + I PS FYDY AKY ++ PA L + ++ L +KA+ L +G R+D Sbjct: 241 AGEIVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMARVDF 300 Query: 259 MLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++D + G YL E NT PG T S+ P +G S+S L+ ++ LA Sbjct: 301 LMDRNTGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLLDELINLA 348 >UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=DDL_ACIB3 Length = 308 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 155/302 (51%), Positives = 201/302 (66%), Gaps = 11/302 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG SAER VSL+SG AVL L G+ A DP+ VT+L + + + FI LH Sbjct: 9 KVAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTEL--VNYDRAFIVLH 66 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDG +QG+LE + +PYTG+GV SA+ MDK+++K +WQG+ LP AP+ +T+ Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + I+ LGLPVI+KP EGSSVGMSKV A+ A QHD V+ EKW+ Sbjct: 127 DSV-------IAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKATQHDAVVMAEKWI 179 Query: 184 SGPEFTVAILGEEILPSIRIQPSGT--FYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 +G EFT++ L + LP IR+QP FYDYEAKY ++ +Y P GL ++E LQAL Sbjct: 180 TGREFTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALC 239 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L+A+ +G +GWGRID M D G F+LLE NT PGMTSHSLVP AA+ G SF +L V I Sbjct: 240 LRAFQAVGAEGWGRIDAMQDEQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAI 299 Query: 302 LE 303 L+ Sbjct: 300 LD 301 >UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteobacteria RepID=DDL_BURPP Length = 313 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 157/302 (51%), Positives = 206/302 (68%), Gaps = 4/302 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG SAEREVSLNSG VL GLR+ G+DA+P DP E + LK GF + F ALH Sbjct: 11 KVAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKEEGFVRAFNALH 70 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GE+G +QG L+ G+ YTGSGV+ SAL +DK R+KL+WQ G+P P+ A+ R + Sbjct: 71 GGYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDY 130 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + S + + + LGLP+ VKP+ EGSSV + KV + +AL AL A ++D+ V++EK + Sbjct: 131 EARSKEIV---AKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKYDKIVVVEKSV 187 Query: 184 S-GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 G E+T I G LP IRI P+G FYDY AKY++++TQY P GL A +EA L+ L Sbjct: 188 EGGGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLAR 247 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +A+ LGC WGR D MLD+DG Y LE NT+PGMT HSL P AAR G+S+ +LVV +L Sbjct: 248 RAFDVLGCTDWGRADFMLDADGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVGVL 307 Query: 303 EL 304 L Sbjct: 308 AL 309 >UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXB8_DESAC Length = 305 Score = 383 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 127/304 (41%), Positives = 175/304 (57%), Gaps = 7/304 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 +I V++GGTSAEREVSL +GAA++ L E G +D + QL VF+A+ Sbjct: 6 QRIGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKTLPAQLIEKQIDVVFLAV 65 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGR GEDGT+QGMLELM +PYTGSGV+ASAL++DK +K + G+ + Sbjct: 66 HGRFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLV----- 120 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 SD P +VKP REGS++G++ + L+ A+ A +D VL+E + Sbjct: 121 -DVNSDVDDIVAQCGHFPQVVKPVREGSTLGIAIANNADELKQAIAQARDYDRRVLVEDY 179 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E TV+++ L I I P FYDY AKY +T+Y PA L SQ +Q + Sbjct: 180 IDGREVTVSVMNGRALSIIEIVPESGFYDYTAKYTVGKTRYLVPAPLPESQYKAIQQAAV 239 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 ++ +LGC+G R+D M+ D FY LE NT PGMT SL+P AA GM F++LV IL Sbjct: 240 ASYASLGCRGAARVDFMVTDDN-FYFLEVNTIPGMTETSLLPKAAADCGMDFAKLVEGIL 298 Query: 303 ELAD 306 + A Sbjct: 299 DDAS 302 >UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria RepID=DDL_CLOTH Length = 376 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 114/360 (31%), Positives = 175/360 (48%), Gaps = 56/360 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY---------------PVDPK--- 43 ++ V+ GG S+E EVS S ++L + D P+D Sbjct: 4 KKRVLVIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSG 63 Query: 44 ----------------------------------EVDVTQLKSMGFQKVFIALHGRGGED 69 E KS VF LHG GED Sbjct: 64 EWEEIALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGED 123 Query: 70 GTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDK 129 GT+QG+ EL G+PY G GV+ASA+ MDK+ +K++++ AG+P A ++ TR E + Sbjct: 124 GTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGV 183 Query: 130 QLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFT 189 PV VKPS GSSVG+SK +N L++AL A ++D +VLIE++++G E Sbjct: 184 VDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARYDRKVLIEEFINGREVE 243 Query: 190 VAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWT 246 A+LG + I P FYDY+AKY+ + ++ PA L ++ +KA+ Sbjct: 244 CAVLGNDDPVASTVGEIIPGNEFYDYKAKYIENTSKIKIPADLPEETVEQIRNYAVKAFK 303 Query: 247 TLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L C G R+D + + G+ Y+ E NT PG TS S+ PM ++G+S+ +L+ ++++LA Sbjct: 304 ALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363 >UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aphidicola RepID=B6CM19_9ENTR Length = 310 Score = 382 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 152/303 (50%), Positives = 213/303 (70%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M K+AVLLGG S ER++S++SG AVL L GI AYP D ++ + QLK F +I Sbjct: 1 MKKKVAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFDTRDFPIMQLKKQKFDTAYI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG+GGEDG++QG+LE + +PYTGSG+MAS++S+DK R+KLLW+ AGLPV P V + + Sbjct: 61 ALHGKGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKK 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + K LS L P++VKP+ +GSS+G++ V +N L++A+ +AF + +L+E Sbjct: 121 DILKNLSSLLKKRFFKLDFPLLVKPNNQGSSIGITLVYLKNQLKNAIEVAFNYSNTILVE 180 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 +++ G E+TV+IL E+ILPSI+I FYD+ +KY TQY CP+GL QE L+ + Sbjct: 181 QFIKGTEYTVSILDEKILPSIQIITKNNFYDFASKYQLSSTQYLCPSGLNLKQEKKLKKI 240 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 KAW TLGC G GRIDV+LDS+ +F+LLE NT PGMT+ SL+P++A GMSF +LV+ Sbjct: 241 AKKAWDTLGCNGCGRIDVILDSNNKFWLLEINTIPGMTNRSLLPISANAIGMSFDELVLN 300 Query: 301 ILE 303 IL Sbjct: 301 ILN 303 >UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aphidicola RepID=DDL_BUCBP Length = 309 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 156/306 (50%), Positives = 216/306 (70%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 +T+KIAVLLGGTS ER +SL SG +L L + GI A +D K+ +TQL F K FI Sbjct: 4 ITEKIAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAIDTKDFPITQLPHQKFTKAFI 63 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGR GEDGT+Q +L+ + +P+TGS + SA+S++K ++KLLWQ LPV P++ + + Sbjct: 64 ALHGRDGEDGTIQSVLKYLNIPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKH 123 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 EF K K IS LGLP+IVKP++EGSS+G++ V + L A + AF D +LIE Sbjct: 124 EFNKKFLQKFKKNISLLGLPIIVKPNQEGSSIGITIVYSYETLYKACKTAFIFDNSILIE 183 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 K++ G E+T++ILG++ILP IRI P TFY+Y +KYLS+ T YFCP+GL +E L+ + Sbjct: 184 KFIYGEEYTISILGKKILPIIRICPENTFYNYNSKYLSNRTTYFCPSGLNKLKELELKKI 243 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L AW + GWGR+DV++D +F+LLEANT PGMT HSL PM+A++AG+S+ LV + Sbjct: 244 TLTAWNIIDGTGWGRVDVIMDYKNKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQK 303 Query: 301 ILELAD 306 ILELA+ Sbjct: 304 ILELAN 309 >UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobacillus RepID=B5ELC0_ACIF5 Length = 308 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 151/309 (48%), Positives = 192/309 (62%), Gaps = 10/309 (3%) Query: 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQ-LKSMGFQK 57 M+D +IAVL GG S EREVSL+SG AVL L+ G+DA VD + + Q + G Q Sbjct: 1 MSDLARIAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDIQPAILQQQMAESGAQI 60 Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 F HG GEDG LQ LE + +PYTGSGV+ASAL+MDK R K LW+ AGLPV + L Sbjct: 61 AFNVCHGAVGEDGLLQACLETLDMPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILL 120 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 R L + G P+ +KP+ GSS+G+SKV L AL+ AF ++EV Sbjct: 121 HRGSHTPDLG-------ARFGWPLYIKPNHGGSSLGVSKVGGPAELDAALQCAFAIEDEV 173 Query: 178 LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 L E + G E TV IL + LP I I+ FYDY AKYL+D+T+Y P+GL A E L Sbjct: 174 LCEGAVIGHEVTVGILDGQALPPIVIETPRAFYDYTAKYLADDTRYLLPSGLGAPLEQQL 233 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 QAL L+A+ LGC+ WGR+D M+ DG+ +LLE N+ PGMTSHSL+PMAA+ GM F +L Sbjct: 234 QALALRAFAELGCRDWGRVDFMIGGDGRPHLLEVNSVPGMTSHSLIPMAAKATGMGFPEL 293 Query: 298 VVRILELAD 306 IL A Sbjct: 294 CATILRTAQ 302 >UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteria RepID=DDL_SYNJB Length = 325 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 126/306 (41%), Positives = 180/306 (58%), Gaps = 9/306 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL---KSMGFQKVFI 60 I VL GG SAER+VS +G A L + G +DP E +L + G V+I Sbjct: 2 NIVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDEDLPLRLWQERQAGCDFVWI 61 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GGEDG +QGML+ +GLPY GSG +ASAL+MDKL SK +++ AG+P W Sbjct: 62 ALHGPGGEDGVVQGMLDWLGLPYQGSGPLASALAMDKLVSKQIFRAAGIPTPDWQV---- 117 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 ++ + LG P+++KPS GS+VG+S V E + L LA + +E Sbjct: 118 -WDDQNPLTWADCAAELGSPLVIKPSNNGSTVGISIVRDERSFAQGLELARSVSSRIFLE 176 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPS-GTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 +++ G E T++IL ++LP+I I P+ G FYDYEAKY +++ P L + A +A Sbjct: 177 RYVPGKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSPAGLARCEA 236 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 LKA+ LGC+G R+D+ +D + ++LE NT PGMT SL P AA G +F++LV Sbjct: 237 AGLKAYQALGCEGLARVDLRVDPEENPWVLEVNTLPGMTPTSLCPDAAAALGWTFTELVE 296 Query: 300 RILELA 305 R+L+ A Sbjct: 297 RMLQDA 302 >UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW8_CRYCD Length = 313 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 140/307 (45%), Positives = 194/307 (63%), Gaps = 10/307 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-KEVDVTQLKSMGFQKVFIAL 62 K+A+L GGTS ERE+SL SG L++ G +DP K+ D+ QL S F F+ L Sbjct: 9 KVALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKKDDLAQLVSQPFDVAFLCL 68 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGRGGEDG +QG LE +GLPY G G+ +SA +MDK+++K+ ++ G+P + L R E Sbjct: 69 HGRGGEDGAIQGFLETIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHRNE- 127 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 S I+ LG ++VKP+ EGS++G+S + +AL AL AF+ D VLIE + Sbjct: 128 ----SVDAATVIAQLGNHLVVKPATEGSALGVSIIEGPSALDRALTEAFKLDNAVLIETF 183 Query: 183 LSGPEFTVAILGEE---ILPSIRIQPS-GTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 ++G E TVA++G E LP I I P G FYD+E+KY +D +Q+ CPA L Q +Q Sbjct: 184 MAGTELTVAVIGNENASALPVIEIVPQLGEFYDFESKYAADGSQHICPARLTDEQTTAVQ 243 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + ++A LGC G R DV+L +DG ++LE NT PGMT+ SL+P A R AGMSF QL Sbjct: 244 QVAVQAHKALGCCGVSRSDVILAADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLC 303 Query: 299 VRILELA 305 R++ELA Sbjct: 304 TRLIELA 310 >UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteobacteria RepID=B3PCL8_CELJU Length = 328 Score = 378 bits (973), Expect = e-104, Method: Composition-based stats. Identities = 148/308 (48%), Positives = 200/308 (64%), Gaps = 13/308 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++ VL GG SAERE+SL SGAAV+A L + GID +D + + +++ + F+ LH Sbjct: 18 RVGVLYGGLSAEREISLQSGAAVIAALEDAGIDHVAIDVGDNVIADIQAANIDRAFLMLH 77 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLW------QGAGLPVAPWVAL 117 G GGEDG +Q +LE + +PYTGS V +SAL+MDKLR+K LW LP + L Sbjct: 78 GPGGEDGRIQALLEFLHIPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVL 137 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 TR +AE+ LG V+VKP+ EGSS+GMS+V LQ A A + V Sbjct: 138 TRES-------DFVAELKRLGGEVMVKPANEGSSIGMSRVKTAEDLQAAFVKATDYQGSV 190 Query: 178 LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 L E+ + G E+TVAIL E LP IR++ +FYD+ AKY++++T+Y CP GL A +E L Sbjct: 191 LAERLIVGAEYTVAILDGEALPPIRLETDHSFYDFNAKYIAEDTRYICPCGLSAEKEQEL 250 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 + L L A+ LGC+GWGR+DVM D+ FYLLE NT+PGMTSHSLVPMAA+ G+SF++L Sbjct: 251 KQLALTAFNVLGCRGWGRVDVMADAQQNFYLLEVNTAPGMTSHSLVPMAAKAVGLSFTEL 310 Query: 298 VVRILELA 305 VV IL + Sbjct: 311 VVTILRAS 318 >UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobacterium hafniense RepID=B8FWD5_DESHD Length = 361 Score = 378 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 116/346 (33%), Positives = 171/346 (49%), Gaps = 42/346 (12%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------- 40 MT KI +L GG S E EVSLNS ++VL + + + + Sbjct: 1 MTRQKIIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQ 60 Query: 41 -------------DPKEVDVTQL------KSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 DP L + F +F LHG GEDGT+QG+ E+ + Sbjct: 61 DPALEGIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANI 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY GSGV+ SAL MDK R K ++ AGLP AP++ + R +K + +LG P Sbjct: 121 PYAGSGVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPC 180 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---IL 198 VKP+ GSSVG+SK L AL+LA ++D ++++E+ + G E +++LG E Sbjct: 181 FVKPANLGSSVGISKARNREELIQALQLAAEYDRKLVVEQNIVGREIELSVLGNEDAQAS 240 Query: 199 PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I P+ FYDYEAKY+ +Q PA L +LQ + A+ + G R+D Sbjct: 241 IPGEILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDF 300 Query: 259 MLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + GQ Y+ E NT PG T S+ P +G+ +++L+ R++EL Sbjct: 301 FVTEGGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIEL 346 >UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=5 Tax=Aquificales RepID=C0QUP4_PERMH Length = 303 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 128/308 (41%), Positives = 181/308 (58%), Gaps = 13/308 (4%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE--VDVTQLKSMGFQK 57 M KIA+L GG+S+ERE+S+ SG AV L++ G DP E + ++ Sbjct: 1 MNKLKIALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFDPAEGKDFIKKITDYNPDL 60 Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 FIALHG+ GEDGT+QG+LE +G+ YTGS + SA+ MDK +K + + G+ V + Sbjct: 61 AFIALHGKIGEDGTIQGVLEFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTI 120 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 + L LG PV+VKP+ EGSS+G+ V E+ L A+ + D +V Sbjct: 121 QNLDQINDL---------RLGYPVVVKPNSEGSSIGVKIVENEDQLGKAVGEILKIDSKV 171 Query: 178 LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 +IE+++ G E TV IL E L I I+ FYDY KY+S ET+Y CPA +E+S + Sbjct: 172 IIERFIKGREITVGILNGEPLDIIEIKVKEGFYDYYNKYISQETEYICPAEIESSLYRKI 231 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Q LK + LGCKG R+D +LD D + Y LE NT PG+T HSL+P AA G++F L Sbjct: 232 QNTALKIYNILGCKGVARVDFILDKD-KPYFLEVNTIPGLTDHSLIPKAAAVKGINFESL 290 Query: 298 VVRILELA 305 +++I+E A Sbjct: 291 ILKIIEGA 298 >UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia RepID=DDL_CALS8 Length = 364 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 114/348 (32%), Positives = 170/348 (48%), Gaps = 43/348 (12%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------- 40 MT K+AVL GG S E EVS+ S +V+ L + + P+ Sbjct: 1 MTKLKVAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLD 60 Query: 41 --------------DPKEVDVTQLKS-----MGFQKVFIALHGRGGEDGTLQGMLELMGL 81 D + + ++K + VF LHG GEDGT+QG+LEL G+ Sbjct: 61 SKWTMYSIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGI 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY G GV++SAL MDK +K L G+P ++ + + E+ S PV Sbjct: 121 PYVGCGVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESEFSYPV 180 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---IL 198 VKP+ GSSVG+SK ++ L A+ AF +D ++LIE+ ++ E A+LG + Sbjct: 181 FVKPANSGSSVGISKAKDKDELILAIHEAFLYDTKILIEQAINAREIECAVLGNSEILVS 240 Query: 199 PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I PS FY YEAKY+ ++ PA LE E ++ L +K + C G RID Sbjct: 241 ALGEIVPSREFYSYEAKYIDGSSELIIPAKLEKQVEDEIKELAVKIYKLFECSGMARIDF 300 Query: 259 MLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +D + + Y E NT PG TS S+ P +G+ + QL+ ++++LA Sbjct: 301 FVDKETNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLA 348 >UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacteria RepID=DDL_MARAV Length = 325 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 158/305 (51%), Positives = 211/305 (69%), Gaps = 9/305 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AV +GG SAEREVSL SG AVLA L+ GIDA D + + + F +VFIALH Sbjct: 24 RVAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDIQGCLLRTVDEPDFDRVFIALH 83 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDGTLQ +L G+PYTGS V+ASAL+MDKLR+K +++G GLP + A+T Sbjct: 84 GRGGEDGTLQAILGQAGIPYTGSEVLASALAMDKLRTKYVFEGCGLPTPAFRAMTSVGEA 143 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 +G+ ++ALG P+ VKP+ EGSS+G+ KV + L +A A + D+ VL+E+W+ Sbjct: 144 EGI-------VAALGTPLSVKPAHEGSSIGIRKVNSAAELAEAYEAAARLDDLVLVEQWI 196 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 GPEFTV++L ++ LP+I + FYDY+AKYL+D+T+Y P GL E LQ L L Sbjct: 197 EGPEFTVSLLQDKALPAIGLSTDHAFYDYDAKYLADDTRYRIPCGLAPDDELRLQHLALD 256 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ LGC+ WGR+D+M D G+F+LLE NT PGMT HSLVPMAA+ AG+SF +LVVRIL Sbjct: 257 AFRVLGCRTWGRVDIMQDRAGEFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILR 316 Query: 304 --LAD 306 LA+ Sbjct: 317 DTLAE 321 >UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEL0_GEMAT Length = 344 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 136/343 (39%), Positives = 191/343 (55%), Gaps = 41/343 (11%) Query: 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGF--- 55 M+ +I VLLGG SAER+VSL+SG + LRE G + +DP E +T+ Sbjct: 1 MSKSLRITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLAS 60 Query: 56 ---------------------------------QKVFIALHGRGGEDGTLQGMLELMGLP 82 +F+ALHG GEDGT+Q +L+++G+P Sbjct: 61 GVGSAPPSLEALAGLESRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQALLDMVGVP 120 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 YTGSG +ASAL+MDK SK++ + AG+ A W+ + + L + L PV+ Sbjct: 121 YTGSGHLASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGR--HLDWPVV 178 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR 202 VKPS++GS+VG+S V A L A+R AF++D+EV+IE+++ G E TV ILG+ +LP+I Sbjct: 179 VKPSKQGSTVGLSIVRAPEELAAAVREAFRYDDEVMIERFVPGRELTVGILGDAVLPTIE 238 Query: 203 IQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 IQP YDYE KY + F A L + + L +A+ L +G+ RID LD Sbjct: 239 IQPVKELYDYECKYTPGMAKEFV-AELSPEEASKLADQAKRAFQALKLRGYARIDFRLDP 297 Query: 263 DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 GQ + LEANT PGMT SL+P AA AG+ F L RI++LA Sbjct: 298 QGQPWCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLA 340 >UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=DDL_SOLUE Length = 325 Score = 375 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 113/318 (35%), Positives = 168/318 (52%), Gaps = 20/318 (6%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA--YPVD------PKEVDVTQLKS 52 M ++AV+ GG + E EVS+ S ++LAGL + Y +D P + Sbjct: 1 MKLRVAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKWSPGPILPEPGAH 60 Query: 53 MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVA 112 VF LHG GEDGT+QG+LEL LPY G+GV+ SA+SMDK K + + LP+ Sbjct: 61 ANIDVVFPVLHGTFGEDGTVQGLLELADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIV 120 Query: 113 PWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ 172 +V +TR + + L P+ VKP+ GSSVG+SK E L+ A LA Q Sbjct: 121 DYVTVTRQ------TPSIVDACRRLPFPMFVKPANLGSSVGISKAHDEQELEAAFSLAKQ 174 Query: 173 HDEEVLIEKWLSGPEFTVAILGEEI----LPSIRIQPSGTFYDYEAKYLSDETQYFCPAG 228 +D ++++E+ + G E ++LG E LP I PS FYDYE KYL D + PA Sbjct: 175 YDRKIIVERGIEGRELECSVLGNEAPMASLPC-EILPSREFYDYEDKYLLDMARTQVPAD 233 Query: 229 LEASQEANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAA 287 L + ++ L ++ + + C+G R+D L+ + Y+ E NT PG TS S+ P Sbjct: 234 LPGERTDEIRRLAVECYRAVECEGMARVDFFLEHGTNRLYINEINTIPGFTSISMYPKMW 293 Query: 288 RQAGMSFSQLVVRILELA 305 +G+ F L+ +++E A Sbjct: 294 EHSGIPFCTLLDQLIEFA 311 >UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Tax=Photobacterium RepID=Q6LQQ8_PHOPR Length = 308 Score = 375 bits (964), Expect = e-103, Method: Composition-based stats. Identities = 136/304 (44%), Positives = 202/304 (66%), Gaps = 5/304 (1%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 +I VLLGG S+ER VSL SG V+ + G +A +DPK +DVT + KVFIA Sbjct: 4 IMRIGVLLGGESSERSVSLKSGECVVKAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIA 63 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GE G +Q +L+L+ +PYTGSG +ASA+S++KL SK +WQ L A WV L + Sbjct: 64 LHGGIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKH- 122 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + A++S++ PV+VKP +G S+G+SKV L +A+ AF++D+++LIE Sbjct: 123 ---APIEDIKAQLSSVVCPVVVKPISQGCSIGVSKVDNNADLLEAVITAFEYDDDILIES 179 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 +++G E+T A+L + LP ++I+ S F+DY+AK+ S Y CP+ L + QE ++QAL Sbjct: 180 FIAGREYTCAVLNGKPLPIVQIR-SEQFFDYDAKFGSQSATYHCPSDLTSEQERDMQALA 238 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L A+ LGC+GWGR+D +LD G +L+E NT PGMT+ S+ PMAA++AG+SF Q++ + Sbjct: 239 LNAYNALGCRGWGRVDTILDESGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSL 298 Query: 302 LELA 305 L+ A Sbjct: 299 LDSA 302 >UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKY4_9GAMM Length = 313 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 148/303 (48%), Positives = 197/303 (65%), Gaps = 8/303 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL+GG S ER++SL SG AVLA LR G+DA+ VD + G+ +VFIALH Sbjct: 11 RVAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRETARCMALEGYDRVFIALH 70 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDGTLQG L++ G+PYTG+GV+ SAL MDKL K LW G LP AP+ LT Sbjct: 71 GECGEDGTLQGCLDMGGMPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLTPGFDP 130 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + ++D ALGLP+IVKP+R GSS+G+++V L A A +V E+W+ Sbjct: 131 EAVAD-------ALGLPLIVKPARGGSSLGITRVDRVADLPAAFEAARVQPGQVFAEQWI 183 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFC-PAGLEASQEANLQALVL 242 +G EFTVA+LG E LP I I+ + FYDY AKY +D+T Y C P L S + LQ+L + Sbjct: 184 TGREFTVAVLGNEPLPVIEIRAASGFYDYHAKYEADDTGYLCPPPDLSRSAQLELQSLAI 243 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ L GWGR+D++ D G+ +L+E NT PGMT HSLVP AA QAG+ F +L +RIL Sbjct: 244 AAFAALEGCGWGRVDILQDEHGENFLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRIL 303 Query: 303 ELA 305 + + Sbjct: 304 DSS 306 >UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales RepID=DDL_ANASK Length = 308 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 129/303 (42%), Positives = 176/303 (58%), Gaps = 5/303 (1%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 ++AVL GG S+EREVSL +GAA LR+ G D +D +L++ + F+AL Sbjct: 7 KRVAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARLRAERVEVAFVAL 66 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGR GEDG++QG+LE M +PYTGSGV+ASA+ MDK SK +++ GL VA + RA Sbjct: 67 HGRFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRAS- 125 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + GLP +VKP+ EGSSVG+ V L A R A H +V++E++ Sbjct: 126 ----AGSIGVGDLPFGLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAASHAGDVIVERY 181 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E VA+L + L +I I P+ FYDY AKY + T+YF PA L + + Sbjct: 182 VKGTEVDVAVLDGKALGAIEIVPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMEAAE 241 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A +GC G R+D ++ DG Y+LE NT PGMT+ SLVP A G+SF L RIL Sbjct: 242 AAHRGIGCSGVTRVDFIVAGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERIL 301 Query: 303 ELA 305 + A Sbjct: 302 DGA 304 >UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacteria RepID=DDL_PSEA6 Length = 318 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 154/302 (50%), Positives = 207/302 (68%), Gaps = 3/302 (0%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AV+ GG SAEREVSL SG AVL+ L G++A+ DP E ++ QL F +V I LH Sbjct: 19 KVAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFDPAESELHQLVEQKFDRVLIMLH 78 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDG+LQG L+ M +PYTG+GV+ SAL MDK+RSK +WQ GLP A + + +F Sbjct: 79 GRGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFN 138 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 ++ + L V+VKP++EGSS+GM+KV L A++ AF++D++VL+E+++ Sbjct: 139 AANCSDIMSRLGDL---VMVKPAQEGSSIGMAKVSNAQQLAAAIQQAFEYDDKVLLEQFI 195 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E+TV++L E +PSI + FYDYEAKY S+ T+YFCP+GL A QE L L L Sbjct: 196 QGSEYTVSLLNGEAMPSISMSTPRDFYDYEAKYQSNTTEYFCPSGLPAEQEGLLARLALD 255 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ + GWGR+D M D GQFYLLEANT PGMT SLVP+AA+QAG+SF QL + +L Sbjct: 256 AFDAVAGSGWGRVDFMQDMLGQFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVLA 315 Query: 304 LA 305 A Sbjct: 316 TA 317 >UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia RepID=DDL_NATTJ Length = 365 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 111/348 (31%), Positives = 177/348 (50%), Gaps = 43/348 (12%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------- 40 M ++ VL GG S E EVSL S ++L L + P+ Sbjct: 1 MKKLRVGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELE 60 Query: 41 ---------------DPKEVDVTQL----KSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 DP + + +L K +F LHG GEDGT+QG L+L G+ Sbjct: 61 TGIKNQGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFLDLCGI 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY GSGV+ S+L+MDK+ K + + GL VA + + R+E+E+ + + L P+ Sbjct: 121 PYVGSGVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQLSYPI 180 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EIL 198 VKP+ GSSVG+SKV L + LA ++D + L E+++ G E ++ILG + Sbjct: 181 FVKPANLGSSVGISKVKNREELIQGIDLAVKYDMKCLAEEFIPGKEIELSILGNDNPKTS 240 Query: 199 PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I P+ FYDY AKY++++++ PA L + + ++ + ++A+ L C G R+D Sbjct: 241 VPGEIIPANEFYDYNAKYINNKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYGLSRVDY 300 Query: 259 MLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + D + Y+ E NT PG T S+ P ++G+S+SQL+ ++ LA Sbjct: 301 FVLEDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLLTDLIYLA 348 >UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteobacteria RepID=DDL_SYNFM Length = 311 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 134/308 (43%), Positives = 179/308 (58%), Gaps = 14/308 (4%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS--MGFQKVFIAL 62 +A+L GG SAEREVSL SG V L + DP D+T+L + I L Sbjct: 8 VALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAH-DLTRLAADAEKIDVALIIL 66 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGR GEDGT+QG+LE +G+PY GSGV+ SA++M+K+ SK L+ AGLPVAP + R E Sbjct: 67 HGRMGEDGTIQGLLESLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADRRE- 125 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 LGLPV+VKP EGSS+G+S V + L A+ +Q+D LIEK+ Sbjct: 126 ----PPDLDTVADRLGLPVVVKPEHEGSSIGLSIVRNRDQLAAAVETGWQYDRRCLIEKY 181 Query: 183 LSGPEFTVAILGEE---ILPSIRIQPSG--TFYDYEAKYLSDETQYFCPAGLEASQEANL 237 + G E T +LG + LP I I P F+DY+AKY ++ CPA L + A Sbjct: 182 VHGIEITGGVLGNDHLQALPLIEIIPGEAYEFFDYKAKYTPGASREICPARLSDTITAKA 241 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Q KA L CKG+ R D+++ + ++LE NT PGMT+ SL P AA AG+SFS L Sbjct: 242 QEYARKAHQALCCKGYSRTDMIVSGND-IFILETNTIPGMTATSLFPQAAAVAGISFSAL 300 Query: 298 VVRILELA 305 + R++ELA Sbjct: 301 LDRLIELA 308 >UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=DDL_CLOCE Length = 376 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 104/358 (29%), Positives = 168/358 (46%), Gaps = 54/358 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------------------- 40 ++A++ GG S+E EVS S +V+ + + D + Sbjct: 3 KKRVAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGITKSGQWLKYDGPVEKIGNG 62 Query: 41 DPKEV----DVTQLKSMGF-----------------------QKVFIALHGRGGEDGTLQ 73 D + + V L G +F LHG GEDGT+Q Sbjct: 63 DWEAIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGTIQ 122 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 G+ EL G+PY G GV+ SA+ MDK +K++++ GLP ++ R + + D Sbjct: 123 GLFELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVAQI 182 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL 193 L P VKPS GSSVG++K +L AL +A ++D +L+E++++G E A+L Sbjct: 183 EGRLTYPCFVKPSNAGSSVGVNKASDRESLVKALNIAAKNDRRILVEEFINGREIECAVL 242 Query: 194 GEE---ILPSIRIQPSGTFYDYEAKY-LSDETQYFCPAG-LEASQEANLQALVLKAWTTL 248 G + + P FYDYEAKY + D ++ PA L ++ ++A+ L Sbjct: 243 GNDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFKCL 302 Query: 249 GCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C G R+D + + G+ Y+ E NT PG T S+ P +G+ +S+L+ +++ELA Sbjct: 303 DCAGLSRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIELA 360 >UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQQ8_9FIRM Length = 312 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 126/308 (40%), Positives = 188/308 (61%), Gaps = 8/308 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQ-LKSMGFQKVFIA 61 DKI V++GG S E E+S +G+A+L L+ G +A ++ + +K G VF A Sbjct: 4 DKIVVVMGGPSTEAEISRQTGSAILKALQSKGYNAEGMELNPPTFAEDIKKSGCAIVFNA 63 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG+ GEDG LQG L+++G+PYTGSGV+A+A++MDK SK ++ G+ R E Sbjct: 64 LHGKFGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYYRYE 123 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 ++ L+ + LPV+VK + +GSS+G+ V ++AL+DAL+ AF +++EVL+E+ Sbjct: 124 MKRDLAAEI---KQGFSLPVVVKAASQGSSIGVYIVETKDALEDALKEAFSYNDEVLVEE 180 Query: 182 WLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 ++ G E TVA+ G E P I I + YDYE+KY + + PA + A + + Sbjct: 181 FIRGKELTVAVWGNEEKKEAFPIIEITTTSGRYDYESKYTKGASTHIIPARVSAEKTKEI 240 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Q L +K +T GCKG R+D+ML DG Y++E N+ PGMT SLVP A R G+ F +L Sbjct: 241 QDLAIKTFTACGCKGVARVDMMLSEDGTPYVIEVNSVPGMTELSLVPDAGRAMGVEFPEL 300 Query: 298 VVRILELA 305 RILE+A Sbjct: 301 CERILEMA 308 >UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas RepID=DDL_MARMS Length = 317 Score = 368 bits (947), Expect = e-101, Method: Composition-based stats. Identities = 138/308 (44%), Positives = 192/308 (62%), Gaps = 14/308 (4%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD-----PKEVDVTQLKSMGFQKVF 59 IAV+ GG SAEREVSL SG V GLR G +D + QL+S+ F F Sbjct: 10 IAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDLYGSNAALDPIVQLQSIEFDLAF 69 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG GEDG +Q +LE+ G PYTGS +A L+MDK+ +K W G G+P +++ Sbjct: 70 IALHGGEGEDGRVQALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIPTPAYLSFVD 129 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 + + + PVIVKPSREGS++G++K + L DAL A ++D ++L+ Sbjct: 130 HANADLIEE-------QMSYPVIVKPSREGSTIGINKAMNRAELDDALIKALEYDSDILV 182 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 E+++ GPEFTV ++ + P I ++P YDYEAKY++D+T+Y P GL+ E L Sbjct: 183 EEFIDGPEFTVTVIDDVAYPPIGLKPAPDHKLYDYEAKYIADDTEYLLPCGLDEDDENEL 242 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Q L L A+ +LGC GWGR+DVM D G F++LE NT+PGMTSHSLVPMAA+ G+ ++ L Sbjct: 243 QMLALDAYRSLGCFGWGRVDVMRDQAGVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASL 302 Query: 298 VVRILELA 305 V +I + A Sbjct: 303 VEKIAQNA 310 >UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXY6_HALNC Length = 324 Score = 368 bits (947), Expect = e-101, Method: Composition-based stats. Identities = 136/303 (44%), Positives = 197/303 (65%), Gaps = 12/303 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL----KSMGFQKVF 59 ++ +LLGG S+ER +SL SG VL L+ GID +D + + +L ++ F + F Sbjct: 9 RVLLLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRDFLPELLAAHQAKPFDRAF 68 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 I LHGRGGEDG +Q +LEL+G+PYTG+ + SA+ MDKL K +W+G GLP PW + Sbjct: 69 IILHGRGGEDGQIQAVLELLGIPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVV-- 126 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 + + +LGLPV+VKP EGSSVG++KV + L A R A ++ +V++ Sbjct: 127 -----ATEIEAHRALDSLGLPVMVKPVAEGSSVGVAKVDQPDQLAAAFREAARYG-QVMM 180 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 E+++ G E+TV++LG LP IR+ FYD++AKYL+++T+Y P+GL A +E+ +QA Sbjct: 181 ERYIRGGEYTVSLLGGRALPVIRLSTPHDFYDFDAKYLANDTEYTIPSGLSAEEESAMQA 240 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + LKA+ +G GWGR+D M D GQ +L+E NT PGMT HSLVPMAAR G+ +L + Sbjct: 241 IALKAFEQIGGSGWGRVDFMRDEHGQNWLIEVNTVPGMTDHSLVPMAARAVGIEIEELCL 300 Query: 300 RIL 302 IL Sbjct: 301 GIL 303 >UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB62_BREBN Length = 375 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 107/351 (30%), Positives = 170/351 (48%), Gaps = 49/351 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD-----------------PKEVD 46 ++ ++ GG S+E EVSL + +++ + + PV P +++ Sbjct: 7 RLGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQLPDKIE 66 Query: 47 VTQLKSMGF----------------------------QKVFIALHGRGGEDGTLQGMLEL 78 +L + VF +HG GEDGT+QG+LEL Sbjct: 67 ALRLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGTIQGLLEL 126 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 +PY G+GVMASA+ MDK K ++ AGLP +V L R+++EKG D LG Sbjct: 127 ANIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMDRIERELG 186 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 P VKP+ GSSVG++K L+ AL +A + D +++E+++ E + +LG E L Sbjct: 187 YPCFVKPANMGSSVGINKAKNREELKHALDVAAKFDRRLIVEEFVQVRELEIGVLGNEEL 246 Query: 199 ---PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 + + FYDYEAKY T+ PA + + + +A+ L G R Sbjct: 247 MTSVVGEVIAAKEFYDYEAKYKGAGTELSIPAIVPEHVSEQIAEIAKQAFQALDGSGLSR 306 Query: 256 IDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +D D + + Y+ E NT PG T S+ PM + AG+ +S+L+ R+++LA Sbjct: 307 VDFFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQLA 357 >UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacteria RepID=DDL_XYLFT Length = 304 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 156/306 (50%), Positives = 207/306 (67%), Gaps = 8/306 (2%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M ++AVLLGGTSAEREVSL SG VL LR G+DA VD L F +VF Sbjct: 1 MFGRVAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFN 60 Query: 61 ALHG--RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 LHG GGEDG +QG+++ G+PYTGS V+ SALSMDK+R+K +W GLP + +L+ Sbjct: 61 VLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLS 120 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 + + + LG PVI+KP++EGSSVG+S+V A L++A+ LA +++ E+L Sbjct: 121 ----VCATAVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYEGELL 176 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 +E+ + G E TV+IL E LPSIRI P G +YDY AKYL+++TQY CP GL+ EA + Sbjct: 177 MEQLIEGDELTVSILDEMALPSIRIVPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIA 235 Query: 239 ALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 L L A+ ++GC+GWGR+DVM + G+F+LLE NT+PGMT+HSLVP AA Q GM F L Sbjct: 236 QLALAAFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDL 295 Query: 298 VVRILE 303 V RILE Sbjct: 296 VWRILE 301 >UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteriaceae RepID=C7N496_SLAHD Length = 317 Score = 365 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 126/307 (41%), Positives = 185/307 (60%), Gaps = 7/307 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-VDVTQLKSMGFQKVFIAL 62 +AVL GG S EREVSLNSG A L G + +D E D+ +L F F+AL Sbjct: 11 NVAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLDTAEKADLKRLIDEPFDVAFLAL 70 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGRGGEDGT+QG LE +G+PYTGSG+ AS+++++K ++K + AGL VA + ++ + Sbjct: 71 HGRGGEDGTIQGFLETVGIPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDI 130 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + E + P +VKP+ EGSS+GM+ V + +A++ A D E ++E++ Sbjct: 131 LDENLISDIVETCGI--PCVVKPTTEGSSLGMTIVRDAADIAEAIKTALAVDVEAMVEQF 188 Query: 183 LSGPEFTVAILGE---EILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 +SG E TV ++G E LP I+I P FY+Y AKY + +++ CPA + N Q Sbjct: 189 ISGTELTVGVIGNDDAEALPVIQIVPTEDEFYNYHAKYAAGGSRHLCPAPVSRDVTENAQ 248 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + + A LGC+G R D+++D+D ++LE NT PGMT SLVP AA+ AGM F QL Sbjct: 249 EMAVAAHMVLGCRGVSRTDIIVDADDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQLC 308 Query: 299 VRILELA 305 +++ LA Sbjct: 309 EKLIALA 315 >UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6C5_9BACT Length = 334 Score = 365 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 129/323 (39%), Positives = 185/323 (57%), Gaps = 22/323 (6%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 T IAVL+GG S ERE+SL SG AV L++ G + +D K+ D+ +L FIA Sbjct: 3 TRNIAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDVKDEDIKELDHKEIDVAFIA 62 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG +Q +LE+ G+PYTGSGV AS ++MDK+ SK + AGL + L + Sbjct: 63 LHGYFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKPV 122 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + EI GLPV++KP+ GSS+G+S + N + A + +E +E+ Sbjct: 123 NLADIE----QEIQEFGLPVVIKPTNGGSSIGVSIIKEGNNFHYHVGEALKCGDEAFVER 178 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFC--------------PA 227 ++SG EFT+ IL LP I I + F+DY AKY S +T+YF P Sbjct: 179 YVSGREFTIGILDSRSLPIIEICVADDFFDYNAKYNSGKTRYFVINKTFENKTNILNTPC 238 Query: 228 ----GLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLV 283 L+A+ Q L ++A +GC+G+ R+D++LD+ FY+LE NT PG T SL+ Sbjct: 239 CDVGFLDAALYDKAQELAIEAHNAIGCRGFSRVDILLDNKNDFYILEVNTIPGFTEKSLL 298 Query: 284 PMAARQAGMSFSQLVVRILELAD 306 PMAAR A +SF+ L +I++LA Sbjct: 299 PMAARAADISFTSLCEKIVDLAS 321 >UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci RepID=DDL_DEIGD Length = 339 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 122/336 (36%), Positives = 167/336 (49%), Gaps = 32/336 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------DPKEVDVT 48 M +I +L GG S E EVSL S +VLA L D PV D + T Sbjct: 1 MKKRILLLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALET 60 Query: 49 -------------QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSM 95 + G+ VF LHG GEDGT+QG+L L G+P+ GSGV+ SA+SM Sbjct: 61 GEAVRGGDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSM 120 Query: 96 DKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 155 DK+ +K + G+P W R E+++ + A LG P+ VKP+ GSSVG+S Sbjct: 121 DKVMTKQVLASVGMPQVAWRLAVRREWQE-RPQEVRARAGELGYPLFVKPANLGSSVGIS 179 Query: 156 KVVAENALQDALRLAFQHDEEVLIEKWLSG--PEFTVAILGEE---ILPSIRIQPSGTFY 210 KV L+ AL LAF V++E + E V ILG + P ++ FY Sbjct: 180 KVSGPGELERALDLAFSLGRRVILEAMTAHKPRELEVGILGNDAPIASPVGELRFEADFY 239 Query: 211 DYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM-LDSDGQFYLL 269 DYE KY PA L ++ L L A+ TL C G R+D ++ G+ +L Sbjct: 240 DYETKYTEGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFLN 299 Query: 270 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 E NT PG T+ S+ P AG+S+S+LV R++ELA Sbjct: 300 EVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELA 335 >UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ellin514 RepID=B9XIG4_9BACT Length = 304 Score = 365 bits (937), Expect = 1e-99, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 173/307 (56%), Gaps = 13/307 (4%) Query: 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKV 58 M+ KI V+LGG SAEREVSL +G AV LR G +DPKE + G + V Sbjct: 6 MSKILKITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSL--PAGTEVV 63 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F+ALHG GEDGT+Q L+ +G+PYTG AS L DK+ +K AG+P A ++ Sbjct: 64 FLALHGTYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFE 123 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 + PV++KP R+GSSVG+ V L A ++D +VL Sbjct: 124 S---------RSAVWPMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEALRYDTQVL 174 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 +E+ + G E TV ILG LP + ++P YDY+ KY + T+Y CPA + + A +Q Sbjct: 175 MEERILGRETTVGILGNRPLPIVEVRPKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQ 234 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 L A+ +G + + R+DVM+ +G+ +LE NT PGMT SL+P AA AG+ +++L Sbjct: 235 EAALGAFKAIGGRDYSRVDVMVRPNGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELC 294 Query: 299 VRILELA 305 ++++LA Sbjct: 295 QQMVDLA 301 >UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria RepID=DDL_HELMI Length = 366 Score = 365 bits (937), Expect = 1e-99, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 163/346 (47%), Gaps = 42/346 (12%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------------- 40 M IAV+ GG S E EVSL S +++ L + + Sbjct: 2 MKQTIAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGSNVIDNLRK 61 Query: 41 -------------DPK-----EVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLP 82 DP E + K + F LHG GEDGT+QG+ E +P Sbjct: 62 GQQPYGQRVYFIPDPTCPGLIEENPVTRKPVPVDVFFPVLHGPNGEDGTIQGLFEAANVP 121 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y G GV+ASA MDK K L+ + LP P++ + R +E LG P Sbjct: 122 YVGCGVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESAREQVIDEVEDRLGYPCF 181 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILP 199 VKP+ GSSVG+SK L A A ++D ++++EK ++ E V++LG + Sbjct: 182 VKPANMGSSVGISKATNRAELVAAFDDAVRYDRKLIVEKGINVREIEVSVLGNDEVVASV 241 Query: 200 SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 I P+ FYDY+AKY + +++ PA + A+ A Q + ++A+ + G R+D + Sbjct: 242 PGEIVPAHEFYDYDAKYAAADSRLLIPAPIAAADVATFQEMAIRAFRAIDGSGLSRVDFL 301 Query: 260 LDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 LD + G+ Y+ E NT PG TS S+ P G+ + +L+ R+++L Sbjct: 302 LDKNSGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVDL 347 >UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIX2_HALO1 Length = 330 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 127/303 (41%), Positives = 180/303 (59%), Gaps = 8/303 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD--PKEVDVTQLKSMGFQKVFI 60 ++ VL GG S+EREVSL SGA VLA L+E G + VD P L + V+ Sbjct: 24 RRVGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVDWTPGSSLPALLVEHRVEVVWN 83 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GEDG +QG+ MGLP TG+ + ASA++MDK+ SK L++ G+P W L Sbjct: 84 ALHGTYGEDGAVQGLCACMGLPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRPD 143 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 E + A + LP+++KP+ EGSSVG+S V + + AL+ A VL+E Sbjct: 144 EGDTA------AVFAEWALPLVIKPAYEGSSVGLSLVRERDEIGPALKRARAGQGPVLVE 197 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 +++ G E +V IL + +L ++ I+P+ YDYEAKY+ D+T + P LE +AL Sbjct: 198 RYIEGVELSVGILADRVLGAVEIRPTSGLYDYEAKYVRDDTAFLVPPELERGHIDTCEAL 257 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L+A+ LGC G+ R D+ + +DG ++LE NT PGMTSHSL+P A AG+ + L R Sbjct: 258 GLRAYHALGCTGYARADLRVQADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCER 317 Query: 301 ILE 303 ILE Sbjct: 318 ILE 320 >UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales RepID=DDL_STAA1 Length = 356 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 109/341 (31%), Positives = 174/341 (51%), Gaps = 36/341 (10%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------- 40 MT I ++ GG SAE EVS+ + VL + + + Sbjct: 1 MTKENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIK 60 Query: 41 --------DPKEVDVTQLKS-----MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 + + ++++QL + VF LHG GEDGT+QG+ E++ +PY G+G Sbjct: 61 STDELHLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNG 120 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 V+++A SMDKL K L++ GLP P+++ R+E+EK + L PV VKP+ Sbjct: 121 VLSAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPAN 180 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQ 204 GSSVG+SK E L++ ++ AFQ D +++IE+ ++ E VA+LG E + Sbjct: 181 LGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVV 240 Query: 205 PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDG 264 FYDY++KY + Q PA L+ + L+ + L+A+ C G R D + D Sbjct: 241 KDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDN 300 Query: 265 QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 Q Y+ E N PG T+ S+ P G+S+ +L+ +++ELA Sbjct: 301 QIYINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD72_PLALI Length = 338 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 127/302 (42%), Positives = 171/302 (56%), Gaps = 4/302 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 IA+L GG S ER +SL SG AV L+E G P+DP V + + GF VFIALH Sbjct: 17 NIALLAGGDSDERSISLRSGQAVCQALQERGHFILPIDPAIVSLKGMDWNGFDAVFIALH 76 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +Q +LE G+PYTGS AS L+ DK +K + +P W L+ E Sbjct: 77 GRFGEDGGVQTLLEESGIPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELSPHE-- 134 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 D L + LG PV++KP+ +GSS+G+S V LQ A A +DE +++E + Sbjct: 135 --SFDSLLMKAKELGWPVVIKPASQGSSLGVSIVRQPEQLQSAYERARHYDEALIMEAAI 192 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E+TV + +EILP I I+ F+D+ AKY D T+Y L A+ L+ Sbjct: 193 VGSEWTVGLHDDEILPPICIETDREFFDWVAKYEDDHTRYIFDKPLPATCRQKLETACRG 252 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A LG G R+D+MLDS+G ++LE NT PG+T HSLVP AA+QAG S +L + Sbjct: 253 AVHALGVTGISRVDLMLDSEGNPWVLEINTIPGLTDHSLVPKAAQQAGWSLGELCEESIH 312 Query: 304 LA 305 A Sbjct: 313 RA 314 >UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales RepID=DDL_BACHD Length = 305 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 181/307 (58%), Gaps = 11/307 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 KIAVL GGTSAEREVSL+SG ++ L+ G + +D V L + VFI LH Sbjct: 2 KIAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQVRDLVDLDVDLVFIGLH 61 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +Q +L+L+ +PY G+GV SAL+MDK ++KL ++ AG+ VA V L ++ Sbjct: 62 GRLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYD 121 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + PV+VKP++EGS++G++ E L + AF+HD+ +LIE+++ Sbjct: 122 ANAFNF------TGTYPVVVKPNQEGSTIGLTVAETEEELLQGIEEAFRHDDTILIEEFI 175 Query: 184 SGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 +G E TVA+LG + LP + I P YDYE+KY +++ PA + A +Q Sbjct: 176 AGTEVTVAVLGNKGEERSLPVVEIVPKNKLYDYESKYAPGMSEHIVPARISEEHTAYVQQ 235 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDG-QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 ++A LGC + R+D ++ +DG +L+ NT PGMT SL P AA+ GMS+ +++ Sbjct: 236 AAVRAHQALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMI 295 Query: 299 VRILELA 305 + L+ Sbjct: 296 QTFVNLS 302 >UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYM6_UNCTG Length = 306 Score = 361 bits (928), Expect = 1e-98, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 171/304 (56%), Gaps = 10/304 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 KI VL GG S+ERE+S+ SG AVL ++ ++ +D ++K +IA Sbjct: 12 NKKIGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNRSIAEEIKKEKIDVAYIA 71 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDGT+QGMLE++G+PYTGSG+ ASA S+DK SK +++ A + W L + Sbjct: 72 LHGPMGEDGTIQGMLEILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKKFG 131 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + PV+VKP +GS++G++ V + A++ F++ +E LIE+ Sbjct: 132 TVPEIK----------KYPVVVKPVSQGSTIGVAIVKRPSEFAAAVKEVFKYGDEALIEQ 181 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 ++ G E TV +L + LP + I P G FYD++AKY +Q+ PAG+ +Q Sbjct: 182 FIEGKEVTVGVLNGKALPVVEIVPKGKFYDFKAKYQKGGSQHIIPAGISEEAYETVQNYA 241 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 K + C+ R+D+++D + ++ E NT PGMT SLVP +R G SF LV++I Sbjct: 242 EKVYEIFKCRAICRVDMIVDRKDRVWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKI 301 Query: 302 LELA 305 E A Sbjct: 302 TESA 305 >UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteobacterium KB13 RepID=B6BWF0_9PROT Length = 299 Score = 361 bits (928), Expect = 1e-98, Method: Composition-based stats. Identities = 123/304 (40%), Positives = 178/304 (58%), Gaps = 8/304 (2%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 + KIA+L GG S ER++S+ SG AV L+ + +DP D+ L + + FI Sbjct: 2 LIKKIALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLIDPINTDLCSL--VNYDAAFI 59 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG+ GEDG +Q +LEL+ +P+TGS AS L+M+K SKL+W L ++ L + Sbjct: 60 CLHGKNGEDGKIQSLLELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLILNKT 119 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + I+ L P IVKPS GSS G++ V ++ L A A ++D V+ E Sbjct: 120 NLDYK------KIITHLSDPFIVKPSSSGSSFGINLVKNKDDLILAFTDASKYDPTVIAE 173 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 +++ G EFTV+ILG + L + I FYDY AKY+S+ET + P L ++ + Sbjct: 174 EFIEGREFTVSILGNKSLGVLEITTKNEFYDYNAKYVSNETIFSKPTDLNPEVLEKMENI 233 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L A+ ++GC GWGR+D M+D FYL+E NT PGMT HSL P+AAR AG++F Q V Sbjct: 234 ALSAFISIGCSGWGRVDFMMDKKFNFYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQH 293 Query: 301 ILEL 304 I++L Sbjct: 294 IVDL 297 >UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermothrix orenii H 168 RepID=DDL_HALOH Length = 343 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 105/339 (30%), Positives = 161/339 (47%), Gaps = 34/339 (10%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP---------VDPKEV----- 45 M+ ++ VL GG S E EVS+ S +V+ ++ P V P+E Sbjct: 1 MSKLRLGVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILN 60 Query: 46 ----------------DVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 V VF LHG GEDG LQG L+ + +PY G+ V+ Sbjct: 61 NGINEVKASKDRCITESVRVFLDHKLDIVFPVLHGPYGEDGKLQGFLDCLDIPYIGASVL 120 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 +SA MDK K L+ +P A + + E GL LG P VKP+ G Sbjct: 121 SSAAGMDKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRFLGWPCFVKPANMG 180 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPS 206 SS+G+SKV + ++ AL F +D +++ E+++ G E ++LG E I P Sbjct: 181 SSIGVSKVHSPGEVKKALEKGFYYDRKLIFEEFVEGREIECSVLGNDQVEASLPGEILPG 240 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 FYDYEAKY ++T+ PA L+ S + L +KA+ + G+ R+D L ++G Sbjct: 241 KEFYDYEAKYKDNKTRLVIPASLDESVIDKARNLAIKAFKAIDGNGFARVDFFLKNNGVL 300 Query: 267 YLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + E NT PG T +S+ P G+++ L+ +++ELA Sbjct: 301 LVNEINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIELA 339 >UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=DDL_DICNV Length = 310 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 133/302 (44%), Positives = 191/302 (63%), Gaps = 9/302 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIAL 62 K+AVL GG S+ERE+SL G AV A L GIDA+ +D + + + LK F + F+ L Sbjct: 9 KVAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFSRAFVML 68 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGRGGEDG +Q +L+ +G+PYTGS V+A AL+MDK+ K +WQ AGLPV V +T Sbjct: 69 HGRGGEDGEIQAILQWLGIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPESR 128 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + L ++ + ++KP+ EGSSVG+S+V + L A+ A +++ E W Sbjct: 129 FETLVEQLHCQD------FVIKPALEGSSVGVSRVKNQEQLAAAIPFAGGARAKIMAEPW 182 Query: 183 LSGPEFTVAILGEEILPSIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 + G E T I+ + +LP+I I FYDY+AKY + TQY CPA ++A+ +A + + Sbjct: 183 IVGRELTYGIVNDTVLPAIEIVAGNDHDFYDYDAKYHAANTQYLCPAPIDAALDARCREI 242 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 A+ +G +GWGR+D+++D+ + YLLE N PGMT+HSLVPMAA+Q GM FS LV Sbjct: 243 AFAAFQAIGARGWGRVDMIVDAQNRPYLLEINLVPGMTTHSLVPMAAQQIGMDFSALVQS 302 Query: 301 IL 302 IL Sbjct: 303 IL 304 >UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_RUTMC Length = 293 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 141/299 (47%), Positives = 192/299 (64%), Gaps = 9/299 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 IAVL+GG SAER VSL SG AV L I+ + D ++++L F + FI LHG Sbjct: 2 IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFDWHGYNLSELWQQEFDQAFIVLHG 61 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 RGGEDG +Q LE + YTGS AS +DK R+K++W+ L +AP + Sbjct: 62 RGGEDGYIQKQLENRCIRYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIV-------- 113 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 S + E LP +VKP+ EGSS+G+SKV ++ L +AL LA+Q++ LIE+W+ Sbjct: 114 -ASIHKPIEPIDFPLPWMVKPTLEGSSIGISKVDSQIQLNNALMLAWQYNSHALIEQWIE 172 Query: 185 GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 G E+TVAILG++ LP ++I FYDYE+KY S++ QY CP GL +SQE LQ + LKA Sbjct: 173 GDEYTVAILGDKALPVVKIITDQGFYDYESKYHSNKIQYLCPCGLSSSQEQVLQVIALKA 232 Query: 245 WTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 + + KGWGR+D +++ + YLLE NT PGMTSHSLVPMAA+ GMSF++LVV I+ Sbjct: 233 FFAINAKGWGRVDFIINQHNKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIIN 291 >UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae RepID=DDL_AQUAE Length = 291 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 115/299 (38%), Positives = 169/299 (56%), Gaps = 10/299 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++ VL+GG S+ERE+SL +G AV LRE G + Y +D + +L + KVFIALH Sbjct: 2 RVVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEIKPDKVFIALH 61 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDGT+QG+LE++ +PYTGS +ASA+S+DK +K + + G+ W Sbjct: 62 GRYGEDGTVQGLLEILDIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETF------ 115 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 +S+ + P +VKP REGSSVG+ V + L++ + E V++E+++ Sbjct: 116 --ISEGDVLNTEWNKFPAVVKPVREGSSVGLKIVESLEELKEYALDLLKKTERVMVEEFV 173 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G + TV IL E LP + I P YDYE KY ++Y + LQ + LK Sbjct: 174 EGRDMTVGILKGEALPVVEIIPKKGVYDYECKYTKGMSEYRI--LKDEKLSKKLQEISLK 231 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 L K + RID + +G+ + LE NT PGMT SL+PMAA++ GM F +L+ I+ Sbjct: 232 ISKFLSLKDFARIDFRVTKEGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VIQ4_9BACT Length = 314 Score = 359 bits (923), Expect = 6e-98, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 177/309 (57%), Gaps = 7/309 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-----VDVTQLKSMGFQK 57 +KI VL GGTS EREVSL SGA + + LR G +DP + +T +++ Sbjct: 2 EKIVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEIDPADYPKLSDLLTAVQNEQPLL 61 Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 VF LHG GE+G LQ L L G+ +TGSG AS SMDK SKL+ G+PV ++ + Sbjct: 62 VFNGLHGGSGENGELQAALSLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILM 121 Query: 118 TRAEFEKGLSDKQLAEISA-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 E + + S LGLP+IVKP+ GSSVG+S+V L+ A++ A Q+ Sbjct: 122 REDLLEDYQDVEDYSGFSNQLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSHS 181 Query: 177 VLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 VL+E+++ G E TV I+ E P + I+P +YDY KY +T+Y PA ++ + Sbjct: 182 VLLEEYIPGRELTVTIIDSEAYPVVEIKPLEGWYDYTNKYTHGKTKYEAPAQIDDTVAKL 241 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 LQ L+ W G G+ RID D + Y LE NT PGMTS SL PMAA+ AGMSF + Sbjct: 242 LQLYALRLWKAFGLSGYARIDFRYDGL-KPYFLEVNTLPGMTSLSLTPMAAKAAGMSFQE 300 Query: 297 LVVRILELA 305 L+ +I+ +A Sbjct: 301 LLQKIIYIA 309 >UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YDR1_DICT6 Length = 311 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 170/305 (55%), Gaps = 4/305 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 KI VL+G S+E+E++ + ++ L+ G D + E V +K I+ H Sbjct: 2 KIGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKANINVAIISAH 61 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G+ GEDGT+QG+LEL+G+PY GSGV+ASAL++DK +K ++ +P W+ L++ E E Sbjct: 62 GKYGEDGTIQGLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELE 121 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + + +S L P I+KP+ +GS++G+S E L + LAF++DE ++IE+++ Sbjct: 122 TKDLNNIVKNVSKLKKPWIIKPATQGSTIGLSLASTEEELLKGIELAFKYDENIIIEEYI 181 Query: 184 SGPEFTVAIL---GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 G E T I LP I I P FYDYE KY + + PA L Q L Sbjct: 182 KGKEITAGIYDINNPVCLPLIEIIPKTGFYDYETKYTPGLSDHIIPARLPKEVYEKAQGL 241 Query: 241 VLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + A LGC+ R+D++++ + Y+LE NT PGMT SL P AA+ G+ F +L+ Sbjct: 242 GILAHQALGCRHLSRVDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFPELID 301 Query: 300 RILEL 304 ++ Sbjct: 302 SFIKA 306 >UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizobium japonicum RepID=DDLA_BRAJA Length = 373 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 126/357 (35%), Positives = 180/357 (50%), Gaps = 52/357 (14%) Query: 1 MTDKI--AVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV------------- 45 M DKI VL GG S E EVSL S A+V L + PV + Sbjct: 1 MADKIRVVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQ 60 Query: 46 ----------DVTQLK--------------------SMGFQKVFIALHGRGGEDGTLQGM 75 D +++ + VF +HG EDGT+QG+ Sbjct: 61 AHAAALPILPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGL 120 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 LEL + Y GSGV+ASA+SMDK +K L + AG+PVAP+ LTR F + + Sbjct: 121 LELADVAYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVE 180 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE 195 L LPV VKP GSSVG+ KV ++AL+ AL AF++D +VL+++ + E VA+L + Sbjct: 181 GLSLPVFVKPCNMGSSVGIHKVKTQDALEAALDDAFRYDVKVLVQQGIDAREIEVAVLED 240 Query: 196 EILP---SIRIQP--SGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLG 249 E L + + P FY YEAKYL D + PA L+A+Q +++L + + L Sbjct: 241 ETLFASLASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALE 300 Query: 250 CKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C G+ R+D LD G+F E NT PG TS S+ P +G+ + +L+ R+++LA Sbjct: 301 CSGFARVDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVDLA 357 >UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATM1_RUBXD Length = 318 Score = 357 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 175/308 (56%), Gaps = 7/308 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL GG S ER+VSL +G V L G + +P+D +E +L + VF+ LH Sbjct: 3 RLAVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERLIELEPAAVFVCLH 62 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA-LTRAEF 122 G GGEDGT+Q +LE +G+PYTGSG ++S MDK +K AGLP + + RA Sbjct: 63 GPGGEDGTVQALLETLGIPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMN 122 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 E G + +LG P++VKP+REGSS G+S+V L DA+ AF +D ++L+E+W Sbjct: 123 EMGAAAALNVAADSLGYPLVVKPAREGSSFGLSRVERPEELLDAVYEAFGYDAKILLERW 182 Query: 183 LSGPEFTVAIL-----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 + G E +V IL L + I+P Y+++AKY T + PA L + L Sbjct: 183 VEGREVSVPILEPAGEAPRALGLVEIRPREGAYNFQAKYTPGMTDFAIPAELPPGTASRL 242 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 + L + TLGC G+ R+D +++ + +L+ T PG T S P+AA AG+SF +L Sbjct: 243 EETALAVYRTLGCSGFARVDTIVEGE-TPQVLDVKTIPGFTETSTFPLAAEAAGLSFERL 301 Query: 298 VVRILELA 305 V IL+ A Sbjct: 302 VEIILDSA 309 >UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces RepID=D1XE41_9ACTO Length = 401 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 170/363 (46%), Gaps = 60/363 (16%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------------------- 40 ++AV+ GG S+E +S+ + AV++ L D P+ Sbjct: 32 KPRVAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAIS 91 Query: 41 DPKEVDVTQLKS-----------------------------MGFQKVFIALHGRGGEDGT 71 D + DV +L VF LHG GEDGT Sbjct: 92 DRQVPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGT 151 Query: 72 LQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD--- 128 LQG LEL G+PY G+GV+ASA+ DK K ++ GLPV P+ + E+E Sbjct: 152 LQGFLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARK 211 Query: 129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEF 188 + + + G P+ VKP+R GSS+G++KV + L +A+ A +HD + L+E L G E Sbjct: 212 RIMEFAAEHGWPLFVKPARGGSSMGITKVDDPSGLDEAIEEARRHDPKFLVESLLRGREI 271 Query: 189 TVAILGEEILP----SIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 +L E P I P + FYD+EAKY+ D PA L Q A ++ L + Sbjct: 272 ECGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYI-DSAAGLVPAPLTEEQTAEVRRLAV 330 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ C+G R D L DG F + E NT PG T S+ P +++G+S+ +LV R++ Sbjct: 331 DAFEAASCEGLVRADFFLTEDGTFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 390 Query: 303 ELA 305 + A Sbjct: 391 QAA 393 >UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCJ4_THET1 Length = 362 Score = 355 bits (913), Expect = 8e-97, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 170/344 (49%), Gaps = 39/344 (11%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------- 40 M ++ +L GG SAE +VS+ S +++ L++ ID P Sbjct: 1 MKRYRLLLLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLA 60 Query: 41 -------DPKEVDVTQLKSM---------GFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 D D+ + S VF LHG GEDGT+QG LEL+ +PY Sbjct: 61 SSALFAGDSDVRDIVPVDSQPRSVPEALSAVDVVFPLLHGPYGEDGTVQGFLELVNVPYV 120 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 GSGV+ S+LSMDK+ K +++ GLP+ ++ + R+++ S L PV VK Sbjct: 121 GSGVLGSSLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGIISKIESELEYPVFVK 180 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSI 201 P+ GSS+G++K ++L AL LA ++D +++E+ + E A+LG Sbjct: 181 PANLGSSIGITKAKDRSSLLQALELASKYDRRLIVEQGVEARELECAVLGNDYPRASVVG 240 Query: 202 RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD 261 I P FY +EAKY+S+ ++ PA + S ++ ++A+ + G R+D L Sbjct: 241 EILPGDEFYTFEAKYISESSKTIIPADIPPSVSDEIRDYAVRAFKAVDAAGLARVDFFLT 300 Query: 262 SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 S+ + + E NT PG T S+ P +G+S+ LV ++L+LA Sbjct: 301 SENKVLVNEINTIPGFTPISMYPKLWEASGLSYPDLVRKLLDLA 344 >UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi (class) RepID=DDL_HERA2 Length = 361 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 107/352 (30%), Positives = 163/352 (46%), Gaps = 47/352 (13%) Query: 1 MTDK-IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------DP----- 42 MT + + ++ GG S E EVSL S AV+ L P+ DP Sbjct: 1 MTKRRVGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRNGQWLSGGDPLLALE 60 Query: 43 -------------------------KEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLE 77 Q + LHG GEDGT+QG+ E Sbjct: 61 QQADQKMLGRTPQAGVVSETAIVQSAGSLPEQTNVAALDVIIPVLHGPFGEDGTIQGVFE 120 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 LPY G GV+A+++ MDK K + AGLP PW + R +++ + L Sbjct: 121 FANLPYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEATL 180 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE-E 196 P+ VKP+ GSSVG+SKV L + A +D +++E+ ++ E VAILG + Sbjct: 181 HYPMFVKPANLGSSVGISKVSNRAELATGMAEAAGYDRRIVVEQGINAREIEVAILGNDD 240 Query: 197 ILPSI--RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 PS+ + P+ FYDY KYL +TQ+ PA L+A+ L+ + + A+ + G Sbjct: 241 PKPSVPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQLREMAVTAFKAIDGAGLA 300 Query: 255 RIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D ++ + G Y+ E NT PG T+ S P G+ +S+L+ R+++LA Sbjct: 301 RVDFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELLDRLIDLA 352 >UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae RepID=B7A6N0_THEAQ Length = 321 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 121/331 (36%), Positives = 164/331 (49%), Gaps = 38/331 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLA----------------------GLREGGIDAY 38 M ++ ++ GG S E EVSL S VL LR Sbjct: 1 MEIRVLLIAGGKSPEHEVSLASAEGVLKHMPFPTELAVIAKDGAWLLGEEALRALEAKVA 60 Query: 39 PVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKL 98 P L + VF LHG GEDGT+QG LE++G PY G+GV SAL MDK Sbjct: 61 PKGEHPFPPP-LDWDRYGVVFPLLHGPMGEDGTIQGFLEMLGKPYVGAGVAGSALCMDKD 119 Query: 99 RSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVV 158 SK + AG+PV PWVAL R E + P VKP+ GSS+G+S+V Sbjct: 120 FSKRVLAQAGIPVVPWVALYRGE----------TPLVPFEPPFFVKPANTGSSIGISRVE 169 Query: 159 AENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILGE---EILPSIRIQPSGTFYDYEA 214 L++AL AF+HD + ++EK LSG E V +LG E P ++ FYDYE Sbjct: 170 RYADLEEALEEAFRHDRKAVVEKALSGVRELEVGVLGNVFGEASPVGEVRYEAPFYDYET 229 Query: 215 KYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTS 274 KY + PA L+ E +Q + LKA+ LG +G R+D L ++G+ YL E NT Sbjct: 230 KYTPGRAELLIPAPLDPGTEETVQEMALKAYKVLGLRGMARVDFFL-AEGELYLNEVNTI 288 Query: 275 PGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 PG T S+ P G+++ +L+ R++ELA Sbjct: 289 PGFTPTSMFPRLFLAKGLTYPELLRRLVELA 319 >UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0Y9_9ZZZZ Length = 356 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 113/349 (32%), Positives = 174/349 (49%), Gaps = 47/349 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------------DPKEVD--- 46 K+AVL GG S+E ++S S A++L L + + YPV DP V+ Sbjct: 2 KLAVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYCPDCDPDRVESGA 61 Query: 47 -------------------------VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 +++ + VF LHG GGEDGT+QG+LEL G+ Sbjct: 62 WERMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLELAGI 121 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG-LP 140 PY G GV ASA +MDK +K + +G G+ A + R +FE+ A LG P Sbjct: 122 PYVGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETLGAFP 181 Query: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EI 197 V VKP +GSSVG++K L + L A + D +VL+E+++ G E A+LG + Sbjct: 182 VFVKPCSQGSSVGVAKANNLLELAEGLTEALKLDTKVLVEEFIDGHEVECAVLGNLEPQA 241 Query: 198 LPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 I P+ FY ++AKY + ++ + PA + Q A ++ ++ +T LGC+G R+D Sbjct: 242 STVGEIAPTQEFYTFDAKYKDESSRLYIPAHITEEQLATVRQDAVRVYTALGCRGLSRVD 301 Query: 258 VMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + D G+ E N PG TS S+ P G+ +++L+ R++ LA Sbjct: 302 FFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELLDRLISLA 350 >UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C25 Length = 302 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 130/302 (43%), Positives = 190/302 (62%), Gaps = 9/302 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG S ERE+SL SG AVL L + ++A+ +DPK +++L +VFI LH Sbjct: 8 KVAVLLGGESNEREISLQSGQAVLTSLLQSKVNAFGLDPKFEPLSKLAECS--RVFICLH 65 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G+ GEDG +Q L+ + +PYTGSG AS L MDKL SK +W+ + +V L E Sbjct: 66 GKDGEDGKIQSYLDDIKIPYTGSGFHASKLGMDKLLSKNIWKKLKINTPNFVRL-----E 120 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 +G++ ++ + LG +K + GSS+G+SKV Q A A++ D V+ E + Sbjct: 121 EGMTYDEVCK--NLGSSFFIKAANSGSSIGISKVTKPQQYQAAFESAYKVDNTVIAEMMI 178 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G EFT+ IL L + I+P FYDYEAKY D+T++ CPA L+ + L +K Sbjct: 179 FGEEFTLPILDSSPLSIVEIRPKTDFYDYEAKYHRDDTEFICPAKLDKVLVDKINQLGMK 238 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ LGC GWGR+D M+++ + +++E NT PGMTSHSLVPM+A+Q+G+SF LV+++L+ Sbjct: 239 AFNALGCSGWGRVDFMINNQNEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLD 298 Query: 304 LA 305 A Sbjct: 299 TA 300 >UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R6P1_9CHLA Length = 788 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 106/322 (32%), Positives = 149/322 (46%), Gaps = 21/322 (6%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG------- 54 I +L GG S E EVSL S + L + + + LK+ G Sbjct: 452 KLHIGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNEGDSEEFLI 511 Query: 55 ----------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLW 104 +F LHG GEDGT+QG LE++G PY G +SA+ MDK +K L Sbjct: 512 SSQVLQQLQKCDLLFPILHGTFGEDGTIQGFLEILGKPYVGCDHQSSAICMDKAIAKRLM 571 Query: 105 QGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ 164 Q AG+ + ++A + +++ D L P+ VKP GSS+G+ +V E L Sbjct: 572 QHAGIQTSSFIAFSETDWKNRAKDLLHEIREKLIFPIFVKPVHLGSSIGVQRVTNETELD 631 Query: 165 DALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDET 221 A+R AF D +L+E ++G E A+LG + +LP + +G +DY KY D Sbjct: 632 AAIRNAFAFDPVILVENEIAGREIEFAVLGNDQITVLPPGEVFSAGKIHDYRGKYSRDNA 691 Query: 222 QYFCP-AGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSH 280 P A L +A+ LKA+ CKG RID LD G F+ E N PG T Sbjct: 692 TPSTPQADLPEKWMEEGKAIALKAYQAATCKGMARIDFFLDQSGSFWFNEINPIPGFTPF 751 Query: 281 SLVPMAARQAGMSFSQLVVRIL 302 SL P G S +L+ R+L Sbjct: 752 SLYPQMCEANGFSNEELIDRLL 773 >UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcus sp. MC-1 RepID=DDL_MAGSM Length = 310 Score = 353 bits (907), Expect = 4e-96, Method: Composition-based stats. Identities = 121/304 (39%), Positives = 158/304 (51%), Gaps = 3/304 (0%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 KI VL GG S EREVSL SG A+ L+ G +D L+ G + +AL Sbjct: 6 KKIGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRHITKVLEREGIEVAVLAL 65 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDGT+QG+LE MG+PYTG V ASA+ MDK SK L+ GLP W+ L Sbjct: 66 HGPMGEDGTIQGLLEFMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHE 125 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 E + + VKP GSSVG+S+ V ++ L + A ++E+ Sbjct: 126 EAD--ELVDHFLGDFHGAAFVKPLDSGSSVGISRAVGKDELIRGVAKALSVSHRCMVERA 183 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAG-LEASQEANLQALV 241 + G E T++IL E P I I P FYDY+ KY + T Y PA L+ + + Sbjct: 184 IEGRELTLSILDGEAFPLIEIVPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAVVKIG 243 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L A+ GC+G R D +LD +G +LLE NT PGMT SL P AA G+ QL RI Sbjct: 244 LAAYHITGCRGLVRADFILDGEGTPWLLELNTIPGMTELSLAPKAAHAVGIEMPQLAERI 303 Query: 302 LELA 305 L+ A Sbjct: 304 LQGA 307 >UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium RepID=C8W8J3_ATOPD Length = 319 Score = 353 bits (907), Expect = 5e-96, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-DAYPVDPKEVD-VTQLKSMGFQKVF 59 +AV+ GG S E E+++ SG A L+E G + +D E D V L + V+ Sbjct: 8 KLHVAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAEKDFVVALAQGDYDVVY 67 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 +A+HGR GEDG +QG+LE++ +PYT SGV+ASA+ +K SKL+++ AG+P + + Sbjct: 68 VAMHGRFGEDGCIQGLLEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPS 127 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 +L E LG P+ VKPS GSS G+++V + L AL+LA + E +LI Sbjct: 128 GTVFTDEQVDKLIED--LGFPMFVKPSGNGSSYGVTRVTSREELPAALKLAGEQGERILI 185 Query: 180 EKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 E+ + G E TV ++G + LP + I FY + KY + PA LE + A Sbjct: 186 EECVVGTEITVPVIGNDNPTALPIVEIVTGDEFYSIKTKYEPASLHHVIPARLEPAVYAR 245 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 Q L +KA LGC+G R D ++ DG+ +LE NT PGMT+ SL+P +AR G+ F + Sbjct: 246 AQELAIKAHNALGCRGVSRSDFIVTEDGEPVVLETNTIPGMTARSLLPDSARTGGIDFPE 305 Query: 297 LVVRILELA 305 L R +E A Sbjct: 306 LCTRFIEFA 314 >UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycetales RepID=DDL_STRGG Length = 391 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 113/363 (31%), Positives = 170/363 (46%), Gaps = 60/363 (16%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------------------- 40 ++AV+ GG S+E +S+ + AV+ + D P+ Sbjct: 22 KPRVAVVFGGRSSEHGISVVTAGAVMRAIDRTTYDVLPIGITTDGRWALTADEPERMAIT 81 Query: 41 DPKEVDVTQLKS-----------------------------MGFQKVFIALHGRGGEDGT 71 D K DV +L VF LHG GEDGT Sbjct: 82 DRKVPDVDRLTESAEGSVVLSVDPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGT 141 Query: 72 LQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLS---D 128 LQG+LEL G+PY G+GV+ASA+ DK K ++ GLPV P+ + E++ + + Sbjct: 142 LQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYEVVRPREWDNDPAAARE 201 Query: 129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEF 188 + + G P+ +KP+R GSS+G++KV + L A+ A +HD + L+E L G E Sbjct: 202 RIVDFAGEHGWPLFIKPARGGSSMGITKVDSVEGLDAAIEEARRHDPKFLVESLLRGREI 261 Query: 189 TVAILGEEILP----SIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 +L E P I P S FYD+EAKY+ D PA L Q A ++ L + Sbjct: 262 ECGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYI-DSAAGLVPAPLTEEQTAEVRRLAV 320 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ + C+G R D L DG F + E NT PG T S+ P +++G+ + +LV R++ Sbjct: 321 AAFDAVSCEGLVRADFFLTEDGTFVINEINTLPGFTPISMYPRMWQESGVDYPELVDRLI 380 Query: 303 ELA 305 + A Sbjct: 381 QAA 383 >UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCDC65 Length = 356 Score = 352 bits (904), Expect = 8e-96, Method: Composition-based stats. Identities = 112/338 (33%), Positives = 171/338 (50%), Gaps = 38/338 (11%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------DPKEVDV 47 ++AV+ GG S+E VS + VLA L D P+ D + Sbjct: 13 RLAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPGTL 72 Query: 48 TQLKSMG----------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK 97 +++ G F VF LHG GEDGT+QG+LE+ + Y G+GV+ASA+SMDK Sbjct: 73 PAVRADGPVFAWERLAEFDAVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSMDK 132 Query: 98 LRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKV 157 +K ++ AGLP P+V + E+ + S + A I ALGLPV VKP+R GSS G++ V Sbjct: 133 PFTKTVFSAAGLPQIPYVTIRPWEWNRERS-RVEARIRALGLPVFVKPARAGSSSGVAMV 191 Query: 158 VAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAIL-GEEILPS--------IRIQPSG 207 + + L A+ A D +V++E + G E +L G + P + + Sbjct: 192 ESWDDLDAAVVAARAFDPKVIVEAFARGKRELECGVLQGPDGRPVASVVGEITVAAESDH 251 Query: 208 TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFY 267 FYD+EAKYL + PA + + ++ ++A+ +GC+G R+D L DG Sbjct: 252 DFYDFEAKYLDGTSVNLVPADIPVTLSERIRTYAVQAFEAVGCEGLARVDFFLTDDG-LV 310 Query: 268 LLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + E NT PG T S+ P+ +G+ + LV R++ LA Sbjct: 311 VNEINTMPGFTPFSMFPLLWEASGVRYEDLVDRLVRLA 348 >UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidiphilum infernorum V4 RepID=DDL_METI4 Length = 303 Score = 352 bits (904), Expect = 9e-96, Method: Composition-based stats. Identities = 113/303 (37%), Positives = 163/303 (53%), Gaps = 14/303 (4%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 IAVL GG S ERE+SL + AV L G + +D + F+ + Sbjct: 7 RHIAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDVTTEKFE--IPRDAEICFLCI 64 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDG +Q +L G+P+TGS +S + DK SK L+ G+P P+ + Sbjct: 65 HGSFGEDGQIQRLLMRRGIPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPFCVVGDG-- 122 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + P ++KPSR+GSS+G+ V L A++ + Q+D VL E Sbjct: 123 ----------KKIPFDPPYVIKPSRQGSSIGIEFVYDIKELDQAIKKSTQYDHVVLAEAL 172 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 ++G E TV IL + LP + I+P FYDY KY + YFCPA L Q + +Q L Sbjct: 173 ITGKELTVGILDGKALPVVEIKPKEGFYDYHHKYTKGASTYFCPAPLTVDQTSAVQKTAL 232 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ LGC +GR+D++L +G ++LE NT PGMT SL PMAA+ +GM+F+QL +IL Sbjct: 233 DAFNVLGCSVYGRVDIILSDNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKIL 292 Query: 303 ELA 305 E++ Sbjct: 293 EIS 295 >UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) n=1 Tax=Rickettsiella grylli RepID=A8PM76_9COXI Length = 365 Score = 352 bits (904), Expect = 9e-96, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 169/344 (49%), Gaps = 40/344 (11%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE----------------- 44 K+AVL GG SAE E+SL S AAV+ L + P+ + Sbjct: 8 KTKVAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDT 67 Query: 45 --------------VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMA 90 ++ K + VF LHG GEDGT+QG+L+LM + Y G+ V+ Sbjct: 68 ILLETENAQSFSGLAELMVDKKGHYDVVFPVLHGALGEDGTIQGLLDLMDIAYIGADVLG 127 Query: 91 SALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGS 150 SA+ MDK+ SK L A +PV P++A + + S +G P+ +KP GS Sbjct: 128 SAVGMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIGYPLFIKPVNGGS 187 Query: 151 SVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-------ILPSIRI 203 S+G++K+ + L++A+ L F + +VL+EK L E +A+L + + I Sbjct: 188 SLGITKIKKDTDLENAIELVFTYSTKVLVEKALEVREVEIAVLENQKWGAEPYVSQIGEI 247 Query: 204 QPSGTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 P FY YEAKYL ++ Q PA L+ SQ ++ L ++ + L C G RID ++ Sbjct: 248 IPRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDCSGMARIDFFIEK 307 Query: 263 DGQ-FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 Q Y E NT PG T S+ P +G++++ L+ ++ELA Sbjct: 308 RSQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELA 351 >UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio bacteriovorus RepID=DDL_BDEBA Length = 365 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 153/351 (43%), Gaps = 52/351 (14%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD------------------- 41 M +A++ GG SAE EVSL S V L + + Sbjct: 3 MKKIVALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEA 62 Query: 42 --------PKEVDVTQLKSM---------------GFQKVFIALHGRGGEDGTLQGMLEL 78 P + + L S+ F LHG GEDGT+QG+ ++ Sbjct: 63 TKIVDSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKM 122 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 + LP+ G GV +SA MDK K L A +P A ++ LT + + LG Sbjct: 123 VQLPFVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKNDYNE-----IVKELG 177 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 P +KP+ GSSVG+ K+ L+ AFQ D +VL E+++ G E +++G Sbjct: 178 SPFFIKPANAGSSVGVHKIKTAEDFVVKLKDAFQFDTKVLAEEFIQGREVECSVMGHNHA 237 Query: 199 P----SIRIQPSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGW 253 P + P FY YEAKY+ D PA L +Q + + + +GC G Sbjct: 238 PKASLPGEVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGL 297 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 R+D + +G+ Y+ E NT PG T S+ P +G+S+ L+ ++++L Sbjct: 298 TRVDFFIRPNGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQL 348 >UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUR2_9FIRM Length = 367 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 110/346 (31%), Positives = 163/346 (47%), Gaps = 44/346 (12%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 KI +L GG SAE ++SL S ++ + + PV Sbjct: 7 KIVLLYGGQSAEHDISLISAHNIMQSIMYNYYEVQPVYITKQGDWLKGAPLSGPLSHSNQ 66 Query: 41 -------------DPKEVDVTQLKSMGF-----QKVFIALHGRGGEDGTLQGMLELMGLP 82 P+ V L G VF LHG GEDGT+QG LE++G+P Sbjct: 67 LALTAGPQARWAEGPEGQSVGTLIQPGDIKEADTIVFPVLHGPNGEDGTIQGFLEVLGMP 126 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y G+GV ASA MDK+ SK L+ AGLP P+VA E+ + + L P+ Sbjct: 127 YVGAGVTASACGMDKVISKQLFHQAGLPQVPYVAFDSREWAQSPEEWMNRCEGNLLYPLF 186 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILP 199 VKP+ GSSVG+SK L+ A+ A Q D +++E+ +S E VA+LG + Sbjct: 187 VKPANMGSSVGISKATTTEELRAAVEKALQFDRRIVVEQGISAQECEVAVLGNDDAHASV 246 Query: 200 SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 R+ + FYDY+ KY+++ + PA L + +Q L+A+ L KG R+D Sbjct: 247 VGRLVKTADFYDYDEKYVNNTVEMEIPAQLPDAISDKIQEYALRAYRALDGKGLSRVDFF 306 Query: 260 LDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + + Y+ E NT PG T +S+ P G++ L+ +L+LA Sbjct: 307 VTASHDIYINEINTMPGFTPYSMYPCLWEATGLNTRDLIEELLQLA 352 >UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepID=B9YQN3_ANAAZ Length = 394 Score = 350 bits (898), Expect = 4e-95, Method: Composition-based stats. Identities = 110/345 (31%), Positives = 161/345 (46%), Gaps = 40/345 (11%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREG----GIDAYPVDPKEVDVTQL----- 50 M+ ++ +L GG S E EVS+ S + L + P ++ Q Sbjct: 44 MSKLRVGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQ 103 Query: 51 -----------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 ++ F LHG GEDGT+Q +L LM +P+ GSG Sbjct: 104 QVLTSGVAKEHPGNRANLWQFPPQTAEIDLWFPILHGPNGEDGTIQALLTLMQVPFVGSG 163 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKG--LSDKQLAEISA-LGLPVIVK 144 V+ SA MDK+ K + AGLP + ALTRA+ + K EI A LG P VK Sbjct: 164 VLGSATGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCVFPKLCDEIEATLGYPYFVK 223 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSI 201 P+ GSSVG++KV + L+ AL A +D +++E + E A+LG + Sbjct: 224 PANLGSSVGIAKVQSRQELEAALDNAATYDRRIIVEAGVVAREVECAVLGNDNPKASVIG 283 Query: 202 RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM-L 260 I FYDYE KY + F PA L S +Q L+A+T + G R+D + Sbjct: 284 EITFDSDFYDYETKYTQGKADLFIPAHLPESAVQQIQEKALQAFTAVDAAGLARVDFFYV 343 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ G+ + E NT PG TS S+ P G+SF +LV ++++LA Sbjct: 344 EATGEILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQLIQLA 388 >UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG04_9FIRM Length = 357 Score = 349 bits (897), Expect = 6e-95, Method: Composition-based stats. Identities = 111/351 (31%), Positives = 158/351 (45%), Gaps = 47/351 (13%) Query: 1 MTDK-IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY--------------------- 38 M K +AVL G S+E EVSL S A+VL + D Sbjct: 1 MGKKTVAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIE 60 Query: 39 --------PVDPKEVDVTQLK------------SMGFQKVFIALHGRGGEDGTLQGMLEL 78 PV P + + + VF LHG EDG +QG+LE+ Sbjct: 61 SDRWLQNGPVTPAFISPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGLLEM 120 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 GL Y G GV+ASA MDK + + + AG+ + P+ LTR + + + G Sbjct: 121 AGLAYVGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGAL-AHFDETERMLAAKHG 179 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE--- 195 P+ +KP+ GSSVG+ K L AL AF+ D +V+ E + G E A+LG Sbjct: 180 YPMFIKPANTGSSVGVGKAKDAGGLCAALSEAFRFDRKVIAETAVVGDELECAVLGNFDR 239 Query: 196 -EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 E I P FYDY KYL D T + PA + ++ ++A+ +GC G Sbjct: 240 AEASCVGEIVPRHEFYDYSGKYLDDSTDLYIPARISGEASERIRQTAVRAFAAMGCTGLS 299 Query: 255 RIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D L +G+ L E NT PG TS S+ P G+ + +L+ R++ELA Sbjct: 300 RVDFFLTREGRVVLNEINTLPGFTSISMYPKLFEAVGLPYPELISRLIELA 350 >UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D443_PAESJ Length = 359 Score = 349 bits (896), Expect = 7e-95, Method: Composition-based stats. Identities = 107/345 (31%), Positives = 165/345 (47%), Gaps = 40/345 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------------- 40 M K+ VL GG S E EVSL + VL + E +AYPV Sbjct: 1 MRTKLYVLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPIAKDEL 60 Query: 41 ------------DPKEVDVTQLKSM----GFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 DP L + G + V LHG GEDGT+QG+LEL+ +PY Sbjct: 61 TIERLIATPTFPDPARSIGEILSGIMALPGPKVVLPLLHGPNGEDGTVQGLLELVNVPYV 120 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 G+GV+++AL++DK SK + AG+ + E+ ++ P VK Sbjct: 121 GNGVLSAALTLDKAMSKQVLAQAGINQTEYRVYRYEEWITDEESVLRKAEDSIEYPCYVK 180 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSI 201 P+ GSS+G+S+ L +R AF +D++++IE+ +SG E VA++G E Sbjct: 181 PASLGSSIGISRCTNRGELLAGIREAFSYDKKLVIEREVSGREIQVAVIGNERPLASLPG 240 Query: 202 RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD 261 F+DYE+KY+ PA L ++ L ++A+ GC+G R+D LD Sbjct: 241 EFIHDHIFFDYESKYMDKRLTMQIPANLADGLTPRIRELAVRAYQAHGCEGLARVDFFLD 300 Query: 262 SDGQFYLLEANTSPGMTSHSLVPMAARQA-GMSFSQLVVRILELA 305 +GQ YL E N PG T+ S+ P+ + G ++S+L+ +++ A Sbjct: 301 GEGQLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHA 345 >UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W8_9ZZZZ Length = 301 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 161/308 (52%), Gaps = 13/308 (4%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE--VDVTQLKSMGFQKV 58 M K+ VL+GG SAEREVSL +G V A L++ G + D + V LK V Sbjct: 1 MAKKVLVLMGGFSAEREVSLTTGKCVCAALKKAGYEVVSHDLQNGFELVETLKKEKPDVV 60 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F ALHG GEDG +QG L+++ +PYT SG+ AS L MDK +K L G+ V Sbjct: 61 FNALHGNWGEDGEIQGFLDVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQG---- 116 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 EK K AE + L +P +VKP +GSSVG+ + + +A+R ++ D E+L Sbjct: 117 ----EKMTFRKFKAEGTFLKMPYVVKPVSDGSSVGVYIIRKKED-AEAVR--YEDDREIL 169 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 IE+++ G E T +LG + ++ S FYDY AKY + TQ+ PA + + Sbjct: 170 IEEFIDGKELTCMVLGSQAHVVTELRASDEFYDYHAKYTAGATQHILPAEIPEEAANRCK 229 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 LGC+ R D + + LLE NT+PGMT SLVP A+ G+ + +L Sbjct: 230 LYAEHMHNILGCRSVSRCDFRYNPEDGVVLLEINTAPGMTDLSLVPEQAKYIGIGYERLC 289 Query: 299 VRILELAD 306 ++E A Sbjct: 290 SYLVENAS 297 >UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli RepID=DDL_LISW6 Length = 370 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 172/354 (48%), Gaps = 49/354 (13%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------------- 40 M K+ +L GG SAE EVSL + +V+ L +A P+ Sbjct: 1 MKTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLTGKLDF 60 Query: 41 ----------------------DPKEVDVTQLKSMGFQ-KVFIALHGRGGEDGTLQGMLE 77 + + + L++ + VF LHG GEDGT+QG+ E Sbjct: 61 VEQLRFSATNTVKLAATESEKSEGEAISPAVLEADDQETVVFPLLHGPNGEDGTVQGLFE 120 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 ++ +PY G+GV+AS+ +MDK+ K ++ AG+P P VA+ +++ + L Sbjct: 121 VLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVSEMEEVL 180 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE- 196 PV VKP+ GSSVG+SK + L+DA+ AF +D V++E+ + E + +LG + Sbjct: 181 TYPVFVKPANLGSSVGISKATNKKELEDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDT 240 Query: 197 --ILPSIRIQPSG---TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCK 251 I P G TFYDY+AKY + T P ++ ++ ++A+ L Sbjct: 241 PVCSVPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDAS 300 Query: 252 GWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G R D L D Q +L E NT PG T +S+ P+ ++ G+ +S L+ R+++LA Sbjct: 301 GLVRADFFLTDDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYSALIERLVDLA 354 >UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibrionales RepID=DDL_DESDG Length = 308 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 151/303 (49%), Gaps = 10/303 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS-MGFQKVFIAL 62 +I ++ GG S ER+VSL+ + A L G DP L++ F+ L Sbjct: 2 RILLIAGGWSEERDVSLSGARGIHAALERLGHQVTLFDPCRTLAGLLEAAQAHDFAFLNL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG+ GEDG +Q +LE G+PY GSG S L+++K +K ++ GLP WV L Sbjct: 62 HGQPGEDGLVQALLETAGVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPG 121 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 P +K + GSS+ + +V L AL F E +IE Sbjct: 122 ADWEPP--------FAFPAFIKSNNGGSSLALHRVSCPGELARALDELFTRGGEAIIEPA 173 Query: 183 LSGPEFTVAILGEEILPSIRIQPSG-TFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E T +LG+E LP I I+P G F+DY +KY + + CPA L A ++ Sbjct: 174 VEGVEVTCGVLGDEALPPILIRPLGAGFFDYASKYTPGQAEELCPAPLPGEVTAKVREYA 233 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L+A LG +G+ R D +L G LLE NT PGMT+ SL+P A G+SF L+ R+ Sbjct: 234 LRAHRALGLRGYSRSDFILTPAGALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGRL 293 Query: 302 LEL 304 +EL Sbjct: 294 IEL 296 >UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular organisms RepID=DDL_ANAVT Length = 367 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 107/359 (29%), Positives = 169/359 (47%), Gaps = 54/359 (15%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGL----REGGIDAYPV--------------- 40 M+ ++ +L GG S E EVS++S A+ + L + P Sbjct: 1 MSKLRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQ 60 Query: 41 ---------------DPKEVDVTQLKSM------------GFQKVFIALHGRGGEDGTLQ 73 P + ++ + F LHG GEDGT+Q Sbjct: 61 QVLKSGAPLLESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQ 120 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKG--LSDKQL 131 G+L LM P+ GSGV+ SAL MDK+ K+ ++ AGLP + A+TRA+ + K Sbjct: 121 GLLTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLC 180 Query: 132 AEI-SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTV 190 EI ++LG P VKP+ GSSVG+SKV + L+DAL A +D +++E + E Sbjct: 181 DEIEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIVEAGVVAREVEC 240 Query: 191 AILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTT 247 A+LG + I + FYDYE KY + + PA + +Q + L+A+ Sbjct: 241 AVLGNDQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAVIPDEISRQIQDMALQAFAA 300 Query: 248 LGCKGWGRIDVM-LDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + G R+D +++ G+ + E NT PG T+ S+ P +G+ F +LV ++++LA Sbjct: 301 VDAAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQLA 359 >UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LDC1_GORB4 Length = 358 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 113/340 (33%), Positives = 168/340 (49%), Gaps = 40/340 (11%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD---------------------- 41 ++ VL GG SAE +VS + A VLA G + P+ Sbjct: 7 RLVVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIAALTDGTP 66 Query: 42 -PKEVDV--------TQLKSMGFQ---KVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 P +DV T+L + V LHG GEDGT+QGMLEL LPY G+GV+ Sbjct: 67 LPDALDVAGTVVDPLTELAAHAADTPTVVLPLLHGPHGEDGTIQGMLELFKLPYVGAGVL 126 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 +SAL MDK +K++ AG+P W+ + + + LGLP+ VKP+ G Sbjct: 127 SSALCMDKAMAKVVAAQAGIPQCRWLEFR--DGVDDPNTIVADAVGQLGLPIFVKPANLG 184 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPS 206 SSVG++K E L A+ +A ++D V++E+ ++G E VA+LG+ E I+P Sbjct: 185 SSVGITKAHDEAELDTAINVALRYDNVVILEEAVTGREVEVAVLGDTAPETSVPGEIEPG 244 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 FYDYE KY++ + PA L A ++ L K +T + C G R+D + G+ Sbjct: 245 SEFYDYEDKYITGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVDFFYEESGRG 304 Query: 267 Y-LLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + L E NT PG T S+ P G+S+ L+ +++ A Sbjct: 305 WLLNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLVTFA 344 >UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFZ2_9BACT Length = 298 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 123/304 (40%), Positives = 168/304 (55%), Gaps = 16/304 (5%) Query: 1 MT-DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVF 59 M K+AVL GG SAEREVSL SG A L G +D ++ G F Sbjct: 1 MKDKKVAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEAGADVCF 60 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG GEDG +QGML+++G+PYTGS A+ ++ DKL SK + G+ ++ L Sbjct: 61 IALHGTYGEDGRVQGMLDIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELNA 120 Query: 120 AEFEKGLSDKQLAEISALGLPVIV-KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 + + V KP+R+GSSVG+ V E L AF++D +V+ Sbjct: 121 PK-------------KGMPFECCVIKPARQGSSVGIHIVQNEEEYFSKLEDAFKYDSKVI 167 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 +E+ + G E TV+IL E LP I I+P YDYE+KY T+Y GL AS+ ++ Sbjct: 168 VEECIKGVELTVSILDGETLPVICIRPKKGVYDYESKYTKGMTEYVFDTGLSASETECVE 227 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 +KA+ LGC G+GR D+M D Y+LE NT PGMT SL+P AA +AGMSF +V Sbjct: 228 NAAMKAFDVLGCSGYGRADIMYDGR-TPYVLEVNTLPGMTETSLLPKAANKAGMSFDNMV 286 Query: 299 VRIL 302 ++L Sbjct: 287 EKML 290 >UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C8F Length = 358 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 120/346 (34%), Positives = 168/346 (48%), Gaps = 55/346 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP------------------- 42 KI VL GG S EREVSL+SG+ + L E G + + +DP Sbjct: 17 IMKIIVLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWPGIREGEEVRYRTREEGY 76 Query: 43 --------KEVDVTQLKS-----------------MGFQKVFIALHGRGGEDGTLQGMLE 77 + D+ +L++ VFIALHG GEDG +Q +LE Sbjct: 77 HFSSEIGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLE 136 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 G+P+TGS L+MDK SK+ + AG+ W + + + Sbjct: 137 AYGIPHTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDF---------- 186 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI 197 LP +VKP GSSVG++ V E AL AF H VL+EK ++G EF+V +LG+ Sbjct: 187 -LPCVVKPLDCGSSVGVTIVEREEEWSAALEAAFSHGGRVLVEKKITGREFSVGVLGDRA 245 Query: 198 LPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 LP+I I P FYDY+ KY T+ CPA ++ QE ++ L L + R+D Sbjct: 246 LPAIEIIPESGFYDYQNKYQPGMTREICPAWIDGMQEVKMKETALTVHRILELGYYSRVD 305 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 M+D DG Y LEANT PGMT SL+P A+ AG+++ +L I+ Sbjct: 306 FMMDEDGAIYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIVN 351 >UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomonadales RepID=DDL_ERYLH Length = 323 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 114/311 (36%), Positives = 162/311 (52%), Gaps = 16/311 (5%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 + VL+GG + EREVSL SG V L + G +D ++ VF A Sbjct: 6 KLHVVVLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAPDVVFNA 65 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDGT+QGML+LMG+PYT SG+ S +++DK +K G+P+ + + Sbjct: 66 LHGVPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSED 125 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLA----FQHDEEV 177 L + L P ++KP EGSSVG++ V E+ + +R +Q E+ Sbjct: 126 ---------LYQQDPLARPYVLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFREL 176 Query: 178 LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 L E ++ G E T A++G + L ++P FYD++AKY T++ CPA + EA Sbjct: 177 LAEPFIRGRELTTAVVGGQALAVTELKPKSGFYDFDAKYTDGMTEHVCPADIPPEIEALC 236 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDS---DGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 + L+A LGC+G R D D D ++LE NT PGMT SLVP A AGMS+ Sbjct: 237 KKYALEAHRILGCRGTSRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSY 296 Query: 295 SQLVVRILELA 305 LV I+E A Sbjct: 297 EDLVEAIVEAA 307 >UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M663_9BACT Length = 321 Score = 345 bits (887), Expect = 8e-94, Method: Composition-based stats. Identities = 127/310 (40%), Positives = 164/310 (52%), Gaps = 10/310 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK--EVDVTQLKSMGFQKVFI 60 KI VL GG S EREVSL SG AV L+ G + +D E LK+ F Sbjct: 5 QKIVVLYGGNSPEREVSLVSGQAVEKALKSAGYETELIDLTGPEKVFEALKT-PCDLFFP 63 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GEDG LQ L+L G PY GSG +AS L MDK SK L+ AGL V + + Sbjct: 64 VLHGSWGEDGRLQAALDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHTPKGVLVRQK 123 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH-DEEVLI 179 + G L + G +IVKP+ GS+V S V L AL A++ L+ Sbjct: 124 DG-TGDLPGLLRALERYGK-LIVKPNCGGSTVATSVVSCSEELLPALNAAWEQKSGGALV 181 Query: 180 EKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+++ G E TVA+ G E LP++ I P+ FYDY+AKY ++Y PA L + Sbjct: 182 EEFIPGRELTVAMWDSGSGPEALPAVEILPASGFYDYQAKYTDGASRYESPARLSGEEAR 241 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 L + AW +G + +GR D L DG+ LLE NT+PGMTSHSLVPMAA+ AGM Sbjct: 242 ALSEAAVAAWRAVGLRDYGRADFRLPPDGEPVLLEINTAPGMTSHSLVPMAAKSAGMELP 301 Query: 296 QLVVRILELA 305 + R+ A Sbjct: 302 DFLSRLARRA 311 >UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGF5_CLOCL Length = 341 Score = 345 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 112/341 (32%), Positives = 170/341 (49%), Gaps = 35/341 (10%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT------------ 48 M IAV+ GG S+E ++SL S A VL + + YP+ + + Sbjct: 1 MNKNIAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKEGLWYEYTGSIDKIED 60 Query: 49 ----------------QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 L + VF LHG GEDGT+QG+ +L+ LP G+ V++SA Sbjct: 61 GSWINDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLCKLLRLPCVGASVLSSA 120 Query: 93 LSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSV 152 L MDK SK + + + V P+ + E+ S + I LG V VKPS GSSV Sbjct: 121 LCMDKAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKKLGEEVFVKPSNGGSSV 180 Query: 153 GMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE------EILPSIRIQPS 206 G+SK+ AE++ + A+ AF++D+ VL+EK ++ E VAI+ + +I + + Sbjct: 181 GVSKLKAEDSFEVAIEKAFKYDKRVLVEKAIAAREIKVAIIEDGIELKTKIGEVVYKNSN 240 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQ 265 FYDYE KY + PA LE ++AL LKA+ L C+G R+D +D + Sbjct: 241 KEFYDYEVKYTEGMNELIVPAKLETEVMDKIEALALKAYKVLDCRGMARVDFFIDRYTSE 300 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 YL E NT PG T S P AG++ ++L+ +++ A+ Sbjct: 301 IYLNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNAE 341 >UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular organisms RepID=DDL_BACAA Length = 304 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 109/302 (36%), Positives = 171/302 (56%), Gaps = 8/302 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 +I V++GG S+E++VS+ +G ++A L + + P+ E K+ +ALH Sbjct: 2 RIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALH 61 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G+ GEDGT+QG LE +G+PY+GS +++S + MDK SK + + G+ W+ LT+ E Sbjct: 62 GKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKME-- 119 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 D E+ LG P++VKP+ GSSVG+ V ++ L L F+ D EV+IEK++ Sbjct: 120 ----DLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKYI 175 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E T +I + LP I I+ + F+DY AKY T L A + + L Sbjct: 176 KGEEITCSIFDGKQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLA 234 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 + L C + R+D+M+ DG Y++E NT PGMT SL+P +A AG+ +S+L+ I+E Sbjct: 235 CYKALKCSVYARVDMMV-KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIE 293 Query: 304 LA 305 + Sbjct: 294 TS 295 >UniRef50_A6CDT2 D-alanine--D-alanine ligase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CDT2_9PLAN Length = 320 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 161/299 (53%), Gaps = 4/299 (1%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 T I VL GG SAE E+SL SG V L G VDP VD+ + G VF+A Sbjct: 11 TFNIVVLSGGESAESEISLKSGETVARALSSRGHQVKIVDPSLVDLDRFDWTGCDVVFLA 70 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDGT+Q L+ +G+PY+G S L+ K SK + + +V + ++ Sbjct: 71 LHGTYGEDGTIQSTLDRLGIPYSGCDAATSKLAFSKSASKERFIQHNVNTPSYVLIHESD 130 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + ++G P++VKP +GSS+G++ V + L AL F +D ++E Sbjct: 131 DAGRIEQHA----RSMGYPLVVKPDAQGSSLGVTIVKSPEELPQALARCFHYDSFGILES 186 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E+TV ++ +++LP I+IQ F+DYEAKY D TQY L + + Sbjct: 187 AIKGTEWTVTVVDDQVLPLIQIQTPHEFFDYEAKYTEDSTQYLFEFDLPTNVIQAIIKTG 246 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 + A T LG G R+D+++D Q ++LE NT PG T HSLVP AA +AG+ F +L + Sbjct: 247 VNACTALGTTGIVRVDLLVDRFQQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGELCEQ 305 >UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetales RepID=C7QH14_CATAD Length = 394 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 120/376 (31%), Positives = 179/376 (47%), Gaps = 75/376 (19%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREG----GIDAYPV------------------- 40 ++AV+ GG S+E +S + +VL LR G + P+ Sbjct: 12 RVAVVFGGRSSEHAISCVTAGSVLDALRNGPEPQRYEIVPIGIASDGRWVLADLPDGGDL 71 Query: 41 ----------------------------DPKEVDVTQLKSM-------GFQKVFIALHGR 65 DP ++T + V LHG Sbjct: 72 NLAITDGRLPEIGLPASAERANLVTMAGDPTARELTVHEPGAVPKSLGEVDVVLPLLHGP 131 Query: 66 GGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF--E 123 GEDGTLQG+LEL G+PY GSGV+ASA+SMDK K L AG V P+ + ++ E Sbjct: 132 YGEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYEVVRPRDWGTE 191 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 +G + +LA + LG PV VKP+R GSS+G++KV A L A+ A +HD +VL+E + Sbjct: 192 EGRAAVRLA-VEELGYPVFVKPARAGSSMGITKVDAPEELDQAIDAARRHDPKVLVEAAI 250 Query: 184 SGPEFTVAIL--------GEEILPS-IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 G E +L E LP+ +R+ FYD++AKYL T+ PA L A + Sbjct: 251 EGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLDGSTEVDIPARLSAEEI 310 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSD-----GQFYLLEANTSPGMTSHSLVPMAARQ 289 +++ + + TLGC+G R+D G+F + E NT PG T S+ P + Sbjct: 311 EDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFTPTSMFPQMWQA 370 Query: 290 AGMSFSQLVVRILELA 305 AG+S+ +L+ R+++ A Sbjct: 371 AGLSYPELIARLIDTA 386 >UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria RepID=DDL_CHLT3 Length = 366 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 110/352 (31%), Positives = 175/352 (49%), Gaps = 48/352 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------------------- 40 K+A+L GG S+E E+S+ S ++ L + P+ Sbjct: 3 KKKVALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILAMD 62 Query: 41 --------DPKEVDVTQ---------------LKSMGFQKVFIALHGRGGEDGTLQGMLE 77 KE+ + + ++ F LHG GEDGT+QG+LE Sbjct: 63 FESAIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGLLE 122 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 + + Y GSGV+ASA++MDK +K+ ++ AGL V ++A R EFE+ L Sbjct: 123 MFDVAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEKKL 182 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE- 196 P+ VKP+ GSSVG+SK N L +A+ LA +D + LIEK ++ E VA+LG + Sbjct: 183 RYPMFVKPANMGSSVGISKAHNRNELIEAIELALAYDRKFLIEKAINAREMEVAVLGNDE 242 Query: 197 --ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 + P FYDY+AKY+ ++ PA + + L+A L A+ C+G Sbjct: 243 PIASAVGEVVPCNEFYDYDAKYVKGSSEVIIPAQISEAFAGKLKAAALNAFVAADCEGMA 302 Query: 255 RIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D +++ + + Y+ E N+ PG TS S+ P Q G+S+++L+ R++ELA Sbjct: 303 RVDFLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIELA 354 >UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria RepID=DDLA_PSEAE Length = 346 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 124/338 (36%), Positives = 177/338 (52%), Gaps = 44/338 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP------------------- 42 K+AVL GG+S ER+VS+ SGA V+ LR G VD Sbjct: 5 KLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVK 64 Query: 43 ---------------KEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 K+ ++ + G F+ALHG GEDGTLQ +L+ G YTGSG Sbjct: 65 EVPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSG 124 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 +ASA++MDK +K L+ AG+ A W+ +E E LG P++VKP+ Sbjct: 125 HLASAMAMDKDVAKRLFLAAGVETASWLMAPASEEE---------VREQLGFPLVVKPNS 175 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSG 207 +GS+VG+S V ++ LQ A+ LA ++ +EV++E++++G E TV +L ++ LP I G Sbjct: 176 QGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGG 235 Query: 208 -TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 +DYE KY + + PA L + A Q L LK L G+ R D LD G+ Sbjct: 236 QEVFDYEHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGRL 295 Query: 267 YLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + LE NT PGMT+ SL+P AA AG+ F++L RI L Sbjct: 296 WCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRL 333 >UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=D1BDJ8_SANKS Length = 400 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 114/358 (31%), Positives = 174/358 (48%), Gaps = 57/358 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------DPKEVDVTQL 50 ++ +L GG S E +S + A V+ + D PV DP +T Sbjct: 36 RVVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQWVLVEDDPDRWAITDG 95 Query: 51 KS---------------------------------MGFQKVFIALHGRGGEDGTLQGMLE 77 + VF LHG GEDGTLQGMLE Sbjct: 96 RLPEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGPFGEDGTLQGMLE 155 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 L + Y G+GV+ASA+ MDK KL+ G GLPV P+ + E+++ ++ A ++ L Sbjct: 156 LADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRD-AEAVTARVAGL 214 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE- 196 GLPV VKP+R GSS+G+SKV L A+ A +HD +V++E + G E A+LG Sbjct: 215 GLPVFVKPARAGSSLGISKVDDLADLPAAVAEARRHDPKVIVEAGIVGREIECAVLGGRR 274 Query: 197 -----ILPSIRIQ---PSGTFYDYEAKYLSDET-QYFCPAGLEASQEANLQALVLKAWTT 247 IQ + FYD+EAKYLS+++ + CPA L A +Q + ++ + Sbjct: 275 GERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCPADLSPELVAEVQDVAVRTFEA 334 Query: 248 LGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + +G R+DV + G+ + E NT PG T S+ P ++G+ +++L+ ++ELA Sbjct: 335 VSGEGLSRVDVFVTEAGEVVVNEINTMPGFTPFSMYPRMWDRSGLPYAELITELVELA 392 >UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteobacteria RepID=DDL_RHOP5 Length = 308 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 118/314 (37%), Positives = 171/314 (54%), Gaps = 17/314 (5%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKV 58 MT + +AVLLGG S+EREVSL SG A L G + +D T L + Sbjct: 1 MTKRKHVAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARDIATVLDQLRPDSA 60 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 + LHG GEDG++QG+LE + +PY+ SGV+ASAL+M K +K + + AG+PVA + L+ Sbjct: 61 LMMLHGHPGEDGSIQGVLETLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLS 120 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENAL--QDALRLAFQHDEE 176 R E +G + P ++KP +GSSVG+ + ++ Q+ R + + ++ Sbjct: 121 RDEIARG---------HVMEPPYVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDK 171 Query: 177 VLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 +L+EK+++G E T A++ E I I P FYDYEAKY +++ PA L Sbjct: 172 LLVEKYVAGKELTCAVVKGEPTDVIEIVPMVRFYDYEAKYSPGASKHVLPASLLPFVYQE 231 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSD----GQFYLLEANTSPGMTSHSLVPMAARQAGM 292 ++ L L A LGC+G R D D G LE NT PGMT SLVP A AG+ Sbjct: 232 VRRLTLAAHVALGCRGVSRADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGI 291 Query: 293 SFSQLVVRILELAD 306 +F +LV ++E A Sbjct: 292 TFDELVQWMVEDAS 305 >UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia muciniphila RepID=D2N2G7_9BACT Length = 316 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 123/308 (39%), Positives = 165/308 (53%), Gaps = 17/308 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-DAYPVDPKEVDVTQLKSMGFQKVFIAL 62 KIA+LLGG AEREVSL SG +V L G D VD D G + + + Sbjct: 14 KIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVHGPDFRL--PEGTELAYNII 71 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDGTLQ +LE G+PYTG+G +SAL +K SK ++ AG+P Sbjct: 72 HGTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTP---------H 122 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + L + +L LP ++KP EGSSVG+ V + + A+ A H VL+E++ Sbjct: 123 AEILDCSNGIVMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEEF 182 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY----LSDETQYFCPAGLEASQEANLQ 238 + G E TV IL + LP I I P FYD KY + T Y CPA L AN+Q Sbjct: 183 IQGKELTVGILDGKALPVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQ 242 Query: 239 ALVLKAWTTLGCKGWGRIDVML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 LKA+ G + +GR+DV+L + DG ++LE NT PGMT SL+P AA +G + L Sbjct: 243 EAALKAYKAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDL 302 Query: 298 VVRILELA 305 +I EL+ Sbjct: 303 CEKIAELS 310 >UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteobacteria RepID=DDL_ROSDO Length = 319 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 123/306 (40%), Positives = 159/306 (51%), Gaps = 15/306 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG S EREVSL+SG A A LR+ G D +D +L G V LH Sbjct: 23 KVAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLH 82 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +QG+LE MG+PY+ SGV+ASAL+MDK RSK + AGLPV P V A+ Sbjct: 83 GRWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVR 142 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 G + P +VKP+ EGSSVG+ V L +EV++E + Sbjct: 143 MG---------HVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQLSE--DMPQEVMVEAFA 191 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E T ++G+ L I G +YDY+AKY + + PA + A L+ Sbjct: 192 PGRELTTTVVGDRALTVTDIVTDG-WYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALR 250 Query: 244 AWTTLGCKGWGRIDVMLDSDG---QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 A LGC+G R D D LLE NT PGMT+ SL P A GM+F +L Sbjct: 251 AHHALGCRGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAW 310 Query: 301 ILELAD 306 ++E A Sbjct: 311 MVEDAS 316 >UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrobiaceae RepID=B2UPW3_AKKM8 Length = 311 Score = 343 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 123/308 (39%), Positives = 165/308 (53%), Gaps = 17/308 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-DAYPVDPKEVDVTQLKSMGFQKVFIAL 62 KIA+LLGG AEREVSL SG +V L G D VD D G + + + Sbjct: 9 KIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVHGPDFRL--PEGTELAYNII 66 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDGTLQ +LE G+PYTG+G +SAL +K SK ++ AG+P Sbjct: 67 HGTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTP---------H 117 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + L + +L LP ++KP EGSSVG+ V + + A+ A H VL+E++ Sbjct: 118 AEILDCSNGIVMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEEF 177 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY----LSDETQYFCPAGLEASQEANLQ 238 + G E TV IL + LP I I P FYD KY + T Y CPA L AN+Q Sbjct: 178 IQGKELTVGILDGKALPVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQ 237 Query: 239 ALVLKAWTTLGCKGWGRIDVML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 LKA+ G + +GR+DV+L + DG ++LE NT PGMT SL+P AA +G + L Sbjct: 238 EAALKAYKAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDL 297 Query: 298 VVRILELA 305 +I EL+ Sbjct: 298 CEKIAELS 305 >UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W7_9ZZZZ Length = 348 Score = 343 bits (880), Expect = 5e-93, Method: Composition-based stats. Identities = 122/341 (35%), Positives = 169/341 (49%), Gaps = 47/341 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD----------PKEVDVTQL--- 50 KIAVL GG S+ER+VSL++G V LRE G D VD P+EV L Sbjct: 2 KIAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLVDACVDFPLDCRPEEVFEKALPIE 61 Query: 51 ----------------KSMGF------------QKVFIALHGRGGEDGTLQGMLELMGLP 82 ++ GF VF ALHG GE+G LQ + +L+ + Sbjct: 62 NHAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLLNIC 121 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 YTGSG L+M+K SK L++ G+P V L+ ++ + LGLP + Sbjct: 122 YTGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESD-----KCRAAELCEKLGLPCV 176 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR 202 VKP+ GSSVG+S V + AL AF + V++EK++ G EF V I+G +LP+I Sbjct: 177 VKPASLGSSVGVSIVRTIDEFFTALDSAFSLEHTVIVEKYIKGREFAVGIVGSRVLPAIE 236 Query: 203 IQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 I P FYDY+ KY T CPA +++ + K + LG + R D M+D Sbjct: 237 IIPKHGFYDYKNKYQPGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADFMVDE 296 Query: 263 DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 +G Y LEANT PGMT SL+P A + F L+ I++ Sbjct: 297 NG-IYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIK 336 >UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacterales RepID=DDL_DESPS Length = 322 Score = 343 bits (880), Expect = 5e-93, Method: Composition-based stats. Identities = 116/309 (37%), Positives = 165/309 (53%), Gaps = 14/309 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG--FQKVFIA 61 +IA++ GGTS EREVSL V L + D D+ +L + FI Sbjct: 10 RIALIAGGTSGEREVSLTGADGVERILDKEKYLVSRYD-SATDLPRLAADAASIDFAFIL 68 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDGT+QG L+L+G+PY GSGV+ SAL+MDK +K + A LPVA W + + Sbjct: 69 LHGLHGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAAGD 128 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHD-EEVLIE 180 F I LGLP++VKP+ GSS+G+S E L + A +++E Sbjct: 129 FFYSEE-----LIEDLGLPLVVKPACAGSSIGISLAHTEEELLAGINHARDCSAGAIMVE 183 Query: 181 KWLSGPEFTVAILGEE---ILPSIRIQPSG--TFYDYEAKYLSDETQYFCPAGLEASQEA 235 +++ G E T A+LG + LP + I P F+DYEAKY ++ CPA + + Sbjct: 184 QFIKGRELTCAVLGNDDLQALPVLEIVPGDKYAFFDYEAKYQPGASEEICPALIADALRE 243 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 +Q ++A L +G+ R D + DG+ YLLE NT PGMT S++P A GM F Sbjct: 244 QVQDHAIRAHQALRLRGYSRTDFIYGEDGKLYLLETNTIPGMTETSILPQEAAATGMDFP 303 Query: 296 QLVVRILEL 304 L+ ++EL Sbjct: 304 SLLDTLIEL 312 >UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4Z4D3_EUBE2 Length = 382 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 111/350 (31%), Positives = 169/350 (48%), Gaps = 57/350 (16%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------KEVDV 47 +I VL GGTS ER+VSL +G V LR G +A +D ++ D+ Sbjct: 39 IMRIVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDL 98 Query: 48 TQLKS--------------------------------MGFQKVFIALHGRGGEDGTLQGM 75 +L VF+ LHG GEDG +Q Sbjct: 99 GELSDNLKKKTADIPAEVKRRTEARESFFGRNVLELCKEADMVFMGLHGSNGEDGKVQAT 158 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 +L+G+ YTG+ ++SA+SM K +K + G+P+ V L + +I Sbjct: 159 FDLLGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGVTLHKG-----------HKIE 207 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE 195 + P +VKP GSSVG+S E +DAL AF +++ VL+E+++ G EF+VA+L Sbjct: 208 YVPFPCVVKPCCGGSSVGVSIAHNEKEFEDALDEAFSYEDTVLVEEFVDGREFSVAVLDG 267 Query: 196 EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 + LP I I+P FYDY+ KY + T+ CPA + + +Q K G + R Sbjct: 268 KALPVIEIEPLEGFYDYKNKYKAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTYAR 327 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +D +LD + + LE NT PGMT SL+P A G+S+ +L +I+E++ Sbjct: 328 VDELLDKNNNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIEIS 377 >UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 Tax=Enterococcus RepID=VANC_ENTGA Length = 343 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 115/341 (33%), Positives = 158/341 (46%), Gaps = 40/341 (11%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV---------------------- 40 KIAVL GG S E VSL S A+V+ + + + Sbjct: 2 KKIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDT 61 Query: 41 ---DPKEVDVTQLKSMGF---------QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 D K S GF +F LHG+ GEDG +QG+LELM LPY G V Sbjct: 62 WLEDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHV 121 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSRE 148 ASAL M+K L G+ AP + L+R E + D+ + + G P+ +KP+ Sbjct: 122 AASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDH---GFPIFIKPNEA 178 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR---IQP 205 GSS G++KV + ALQ AL AF + VLI+K ++G E ILG E L I Sbjct: 179 GSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISL 238 Query: 206 SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ 265 F+D+E KY PA L + E+ ++ + LG G RID + + G Sbjct: 239 VDGFFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQGA 298 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 YL E NT PG T HS P + G+S+ LV +++ LA+ Sbjct: 299 IYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAE 339 >UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C4ZI29_EUBR3 Length = 369 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 107/352 (30%), Positives = 169/352 (48%), Gaps = 54/352 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP------------------- 42 I VL GG S ER+VS +G+ V L+E G +D Sbjct: 18 KMNIVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRAD 77 Query: 43 -----------KEVDVTQLKSMG------------------FQKVFIALHGRGGEDGTLQ 73 + D+ ++K+ VF+ALHG GE+G +Q Sbjct: 78 EISVQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQ 137 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 +L G+ YTGS ++SA++M+K SK + G+P +++TRA + ++ Sbjct: 138 AAFDLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLD--- 194 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL 193 L LP +VKP GSS+G++ V + AL AF+ + E++IE+++ G EF+V ++ Sbjct: 195 ---LTLPCVVKPCCGGSSIGVTIVRDAAEFKAALDDAFKWENELVIEEFVQGREFSVGVI 251 Query: 194 GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 + LP I I P FYDY+ KY + T CPA L ++Q + +G + Sbjct: 252 EGKALPIIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTY 311 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R D +L+ + + LEANT PGMT SL+P A GMSF+QL +++++ Sbjct: 312 SRSDFLLNDKNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLIDIS 363 >UniRef50_UPI0001AF4ABE D-alanine--D-alanine ligase n=1 Tax=Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191 RepID=UPI0001AF4ABE Length = 301 Score = 342 bits (879), Expect = 8e-93, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 161/306 (52%), Gaps = 14/306 (4%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 K+ VL GG S ER++S+ +G A A L++ G DAY +D +L+ + F AL Sbjct: 2 KKVLVLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDRTLPEKLRQINPDVCFNAL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDG++QG+L +MG+PYT SGV AS+++MDK+++K + G+ +A Sbjct: 62 HGPYGEDGSVQGLLNIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIA---------- 111 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 E L D + + P ++KP +GSS+ +A + A+ ++ ++E++ Sbjct: 112 EDQLIDYATYKSMEIPFPYVLKPVNDGSSIATYIFNTPDA-EKLSEQAWIYNTHAMMERY 170 Query: 183 LSGPEFTVAILGEEILPSIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 + G E TV + + + I P FY++ AKY + + + PA + Sbjct: 171 IKGRELTVTVFMNKPVTVTEIIPSTDHQFYNFHAKYDTGGSLHSLPADIPDKAFNICMEN 230 Query: 241 VLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 L LGC+G R D +L+ + G + LE NT PGMT SLVP AG+SF+QLV Sbjct: 231 ALAMHILLGCRGISRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVS 290 Query: 300 RILELA 305 +++ A Sbjct: 291 LLVDEA 296 >UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacteria (class) RepID=DDL_KINRD Length = 376 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 171/364 (46%), Gaps = 61/364 (16%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------DPK------ 43 ++AV+ GG S+E +S + A VLA L D P+ DP Sbjct: 6 KPRVAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTD 65 Query: 44 -----------------EVDVTQLKSMG-------------FQKVFIALHGRGGEDGTLQ 73 +VD L+ +G V LHG GEDGTLQ Sbjct: 66 GALPEVPATGTPVGLPLDVDTKALQRLGGAPGAPALAELGEVDVVLPLLHGPFGEDGTLQ 125 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 G+LEL Y GSGV+ASA MDK KLL G GLPV PW + ++ D +AE Sbjct: 126 GLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDR-DGVVAE 184 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL 193 + ALG PV VKP+R GSS+G+++V + L A+ A HD +V++E L G E +L Sbjct: 185 VEALGYPVFVKPARAGSSIGITRVTSREGLAAAVAEAVSHDPKVVVEAALVGREIECGVL 244 Query: 194 ----GEEILPS----IRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKA 244 G E L S + + FYD+EAKYL + CPA L A ++ ++ Sbjct: 245 EDLDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCPADLPDDVVAAVRRTAVRV 304 Query: 245 WTTLGCKGWGRIDVMLDS---DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 + +G +G R+D+ +D + + E NT PG T S+ P G+ + +LV R+ Sbjct: 305 FEAMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRL 364 Query: 302 LELA 305 ++LA Sbjct: 365 IQLA 368 >UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD66_9FIRM Length = 364 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 107/347 (30%), Positives = 162/347 (46%), Gaps = 46/347 (13%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------------ 40 +A+L GG S+E EVS S + + + V Sbjct: 9 VALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADGSWE 68 Query: 41 ---------------DPKEVDVT---QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLP 82 D + T +++ M V LHG GEDGT+QG+LEL G+ Sbjct: 69 ELPGNMPCVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIA 128 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y G GV+AS++ MDK + L++ G+P WVA R E EK L LG PV Sbjct: 129 YVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF 188 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI- 201 VKP+ GSSVG+SKV + L+ A+ LA ++D +V+ E ++ G E A++G + + Sbjct: 189 VKPANAGSSVGISKVSNQEELKAAIALALENDRKVVFEAFVDGQEVECAVIGSDPAVATR 248 Query: 202 --RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 I FY Y+ KY + +Q PA L ++ ++ A+T L C+G R D Sbjct: 249 PGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGLARCDFF 308 Query: 260 LDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ + G+ + E NT PG T+ S+ P G+ QL+ R++ LA Sbjct: 309 VEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALA 355 >UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAT5_9FIRM Length = 358 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 167/340 (49%), Gaps = 37/340 (10%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK--------EVDVTQLKSM 53 + V+ GG S E +VSL S V+ G+ + D + + DV ++K+ Sbjct: 4 KKNVGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKTN 63 Query: 54 GF----------------------QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMAS 91 + +F LHG+ GEDG +QG+ E+M PY G V+AS Sbjct: 64 EWINDSKNLISDFSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEVLAS 123 Query: 92 ALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE--KGLSDKQLAEISALGLPVIVKPSREG 149 ++ MDK +K +++ G+PV V + + E K L L P+ VKP G Sbjct: 124 SVCMDKDIAKRIFRSVGIPVVDDVLVFNTDIETDKLLEATLDRCEENLPYPMFVKPVNMG 183 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPS 206 SSVG+SK ++L++AL A + D ++L+EK ++ E VA+LG E I Sbjct: 184 SSVGISKAKDRDSLKEALLKAVKFDTKILVEKGINAREIEVAVLGNSHPEASYPGEIVSC 243 Query: 207 GTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ 265 FYDYEAKYLS D ++ PA ++ ++ +KA+ +G G R+D LD D + Sbjct: 244 KEFYDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAVKAFKAVGGSGLSRVDFFLDKDSK 303 Query: 266 -FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 YL EANT PG T+ S+ G+ +S L+ ++++L Sbjct: 304 DIYLNEANTLPGFTNISMYAKMWDYMGIGYSDLIEKLIDL 343 >UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes RepID=C7G8P6_9FIRM Length = 351 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 168/350 (48%), Gaps = 54/350 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------------- 42 KI VL GG S ER+VS +G V LRE G +D Sbjct: 2 KIVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEV 61 Query: 43 ---------KEVDVTQLKSMGFQ------------------KVFIALHGRGGEDGTLQGM 75 D+ ++K+ VF+ALHG GE+G +Q Sbjct: 62 SVKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAA 121 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 +L G+ YTG+G ++SAL+MDK SK L+ AG+P ++ +A+ ++ Sbjct: 122 FDLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKL------ 175 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE 195 + P +VKP GSS+G+S + AL AF+ +E +++E+++ G EF+V ++ Sbjct: 176 GVQFPCVVKPCCGGSSIGVSIAHNAEEYKAALDEAFRWEENLIVEEYVKGREFSVGVIEG 235 Query: 196 EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 + LP I I P FYDY+ KY + CPA L + +Q + LG + R Sbjct: 236 KALPIIEIAPVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSR 295 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D +LD + Y LEANT PGMT SL+P A+ G++F++L ++++++ Sbjct: 296 TDFLLDENENIYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQIS 345 >UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M645_SALAI Length = 360 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 159/357 (44%), Gaps = 63/357 (17%) Query: 6 AVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------------- 40 AV+ GG S E +S S +VLA L + PV Sbjct: 2 AVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGGDSSQLAITDRRL 61 Query: 41 ---------------DPKEVDVTQLKSM-------GFQKVFIALHGRGGEDGTLQGMLEL 78 DP + L VF LHG GEDGT+QGMLE+ Sbjct: 62 PEVTAESGTAVVLNADPSSGGLLVLDPAEGSRALADVDVVFPVLHGAYGEDGTIQGMLEM 121 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 G+PY G+ V ASA +MDK +K L G+PV P+ L R+ DKQ LG Sbjct: 122 AGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVL-RSGMTLTEQDKQ-----RLG 175 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI- 197 LPV VKPSR GSS G+++V L DA+ A + D +VL+E + G E +L E Sbjct: 176 LPVFVKPSRAGSSFGITRVTDWADLDDAVANARKIDPKVLVESAVIGREIECGVLEAEAG 235 Query: 198 -------LPSIRIQPSGTFYDYEAKYLSDET--QYFCPAGLEASQEANLQALVLKAWTTL 248 L +R+ FYD+EAKY+ + +Y PA L +Q ++A+T L Sbjct: 236 GVPEASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADLPERVTRQVQEYAVRAFTAL 295 Query: 249 GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C G R D + + YL E NT PG T S+ P +G+ + +LV R++ A Sbjct: 296 DCAGLARADFFVTPELDVYLNEVNTMPGFTPTSMFPRMWAASGLEYQKLVNRLIRTA 352 >UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYH7_9PROT Length = 307 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 124/303 (40%), Positives = 163/303 (53%), Gaps = 17/303 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 + VL+GGTSAEREVSL SGAAVL LR G+DA +D ++ Q+ FIALH Sbjct: 13 RTGVLMGGTSAEREVSLRSGAAVLDALRAAGVDAVGIDLQQNWADQIAKAAIDTAFIALH 72 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG +QG+LE+MG+PYTGS VMASAL M+K K + AGL Sbjct: 73 GTLGEDGCVQGLLEIMGIPYTGSHVMASALCMNKRLCKQVLGQAGLSTP----------- 121 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 D ++ PV VKP EGSSVG+ ++ ++ Q L Q + E + Sbjct: 122 ---MDIRIEVTGPERYPVFVKPVAEGSSVGLHRISSQQEWQA---LNIQSPAAWMAEMPV 175 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 +G E V++L L + + P YDY +KY T+YFCPA L K Sbjct: 176 NGVEIAVSVLAGVALMPVEVAPKSGVYDYASKYTVGATEYFCPARLPMETVRYCMDCAEK 235 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A GC G R+D+++ S G+ +LE NT PGMT+ SL+P AA AG+ F L +RILE Sbjct: 236 AVAACGCTGAPRVDMIVGSGGEAVILEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILE 295 Query: 304 LAD 306 A Sbjct: 296 TAS 298 >UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S655_9ACTO Length = 377 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 104/359 (28%), Positives = 160/359 (44%), Gaps = 57/359 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP---------------------- 39 T +I V+ GG SAE EVS S V L E G Sbjct: 4 TVRIGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLG 63 Query: 40 -----------------------------VDPKEVDVTQLKSMGFQKVFIALHGRGGEDG 70 V D VF LHG GEDG Sbjct: 64 TVTAGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDG 123 Query: 71 TLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQ 130 +QG+LE +G+PY G G++ASA+ MDK+ K + +P P+V + ++ Sbjct: 124 VVQGLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEK 183 Query: 131 LAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTV 190 L + L P+ VKP+R GSS+G+S+V + L A+ AF+HD VL+E+ ++G E Sbjct: 184 L--VVGLRGPLFVKPARMGSSIGISRVADGDDLVAAVEEAFRHDHVVLVEQGVTGRELEC 241 Query: 191 AILGE---EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTT 247 +LG E ++ +G ++DY KY D PA L ++ L ++A+T Sbjct: 242 GVLGGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTA 301 Query: 248 LGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +G G R+D + D ++ E NT PG T+HS+ P ++G+++ ++V R++ LA Sbjct: 302 IGGWGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVVDRLVALA 360 >UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID=C7H403_9FIRM Length = 365 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 104/347 (29%), Positives = 156/347 (44%), Gaps = 46/347 (13%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------------------- 38 + VL GG S+E EVS S + L + Sbjct: 10 VVVLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMADGSWE 69 Query: 39 --------PVDPKEVD--------VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLP 82 + P D Q++ + V ALHG GEDGT+QG+LEL G+P Sbjct: 70 ELPGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGLLELAGIP 129 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y G GV+ASA+ MDK + L+ AG+P W++ R E E L I+ LG P+ Sbjct: 130 YVGCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRWEIESDLDGVCDGAIAKLGWPIF 189 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI- 201 VKP+ GSSVG++K + L+ A+ LA ++D +V+ E ++ G E A++G + + Sbjct: 190 VKPANAGSSVGITKAHDRDELKQAIALALENDHKVVFEAFVDGHEVECAVIGSDPAVATR 249 Query: 202 --RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 I FY Y+ KY + +Q PA L + ++ A+T L C+G R D Sbjct: 250 PGEILAGAEFYTYDDKYKNGVSQVVIPARLSEEKLDEVKTYAAMAYTALNCEGLARCDFF 309 Query: 260 LD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ + + E NT PG T S+ P G L+ ++ELA Sbjct: 310 VEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHLIELA 356 >UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella RepID=DDL_FRAP2 Length = 297 Score = 338 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 128/306 (41%), Positives = 179/306 (58%), Gaps = 13/306 (4%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFI 60 +KI VL GG S EREVSL SG AVL L G DA +D D V +L + K FI Sbjct: 3 KEKIVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFI 62 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GE+G + +LEL+G+ +TGS + + ++MDK+ SK + +P Sbjct: 63 ALHGEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTP-------- 114 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 K L+D+ L E + PV VKPS GSS+ KV + L++A + A +H EV+IE Sbjct: 115 -MAKFLTDR-LVEADEISFPVAVKPSSGGSSIATFKVKSLEELENAYQQASKHG-EVMIE 171 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 +W++G E TVAI+ ++ S+ I+P FYDYE+KY S ++ Y P+GL +E ++ L Sbjct: 172 QWVTGKEITVAIVNNDVYSSVWIEPLNEFYDYESKY-SGKSIYHAPSGLCEQKELEVRQL 230 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 KA+ LGCKG R+D + D G FY++E N+SPGMT +SL P +A G+ F V Sbjct: 231 AKKAYDLLGCKGHARVDFIYDDKGDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKS 290 Query: 301 ILELAD 306 ILE A Sbjct: 291 ILEQAQ 296 >UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium RepID=DDL_CLOK1 Length = 297 Score = 338 bits (869), Expect = 1e-91, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 173/303 (57%), Gaps = 9/303 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+ +++GG S+EREVSLNSG +++ + + + P+ + + K FIALH Sbjct: 2 KVGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVFEKVKDIDFAFIALH 61 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G+ GEDG +Q + + M +PY+G + S + MDK SK L A + A W+ + Sbjct: 62 GKFGEDGIIQSVFQTMDIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICI------ 115 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 K + + + +G PV+VKP+ GSSV + + +++A RLAF +DEEV+IEK++ Sbjct: 116 KSIENIDYDYLEKMGYPVVVKPNSGGSSVATTIIEKSEDIEEAARLAFNYDEEVMIEKYI 175 Query: 184 SGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 G E T IL LP + I+P G+F+DY +KY ++ E ++ ++ + L Sbjct: 176 EGDEITCCILDGTALPILAIKPNKGSFFDYTSKYADGGSEEIV-VEFEKPLQSKIEEISL 234 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 K W CKG+ R+D++L D Y+LE NT PG+T +SL P +A +SF++L+ +I+ Sbjct: 235 KCWELFKCKGYVRVDMIL-KDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELLDKII 293 Query: 303 ELA 305 + + Sbjct: 294 QCS 296 >UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria RepID=DDL_BAUCH Length = 375 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 171/353 (48%), Gaps = 51/353 (14%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP--VDP--------------- 42 M ++ ++ GG SAE EVSL S ++ + E + +D Sbjct: 1 MAKLRVGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIY 60 Query: 43 --KEVDVTQLKSMGF------------------------QKVFIALHGRGGEDGTLQGML 76 E + KS +F +HG GEDG LQG+L Sbjct: 61 GENETYIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLL 120 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 + LP+ GS V+ SA+SMDK +K L + A L V P + LTR E D+ + + Sbjct: 121 RMANLPFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQII---TY 177 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE- 195 LG + VKP+ +GSSVG+SKV+ + AL LAF D++VL+E ++G E A+LG Sbjct: 178 LGSSLFVKPANQGSSVGVSKVINRISFDQALALAFCFDDKVLVESAINGRELECAVLGNH 237 Query: 196 --EILPSIRIQPSGTFYDYEAKYLSD-ETQYFCPAGLEASQEANLQALVLKAWTTLGCKG 252 + I S FY YE KYL++ PA + N+Q + ++A+ L C G Sbjct: 238 DPQASLCGEIVLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTG 297 Query: 253 WGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+DV L ++ + + E NTSPG TS S+ P + +G+S+ L+ R++ELA Sbjct: 298 MARVDVFLTTNNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIELA 350 >UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema RepID=DDL_TREDE Length = 368 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 170/351 (48%), Gaps = 49/351 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLRE------------------GGIDAYPVDPKEV 45 IA++ GG S+E EVSL S ++++ + + G + + E Sbjct: 2 NIAIIYGGKSSEHEVSLQSASSIIRTIDKKHKLHLIGISKNGAWYLHGDEERERIIKNEK 61 Query: 46 DVTQLKS------------------------MGFQKVFIALHGRGGEDGTLQGMLELMGL 81 V ++K + VF LHGR GEDGT+QG+ E+ L Sbjct: 62 AVLKIKKDEAKRVTVIPGGGAKKGLKAGDEFLPTDAVFAVLHGRFGEDGTIQGLFEMADL 121 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQL--AEISALGL 139 PY G VM++++SMDK ++K++W +GLP+ P++A+ R +++ K + L Sbjct: 122 PYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKAILARAEKDLEY 181 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE--- 196 P+ +KP R GSSVG V N L + +F D ++L+E + E ++ G Sbjct: 182 PLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWDNKILVEACIEAREVECSVTGNTKTV 241 Query: 197 ILPSIRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 I P+ FYDYEAKY + + PA L +Q ++ +KA+ L G R Sbjct: 242 AYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGLSR 301 Query: 256 IDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +D +D G+ YL E NT PG T+ S+ P +G+ +++L++ ++ELA Sbjct: 302 VDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMHLIELA 352 >UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUG2_ALKMQ Length = 358 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 164/343 (47%), Gaps = 38/343 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-----------EVDVTQ 49 M + VL GG S E VSL S +A++ L + YP+ E ++ + Sbjct: 1 MKTNVYVLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIWSNLGIVEDEIKE 60 Query: 50 LKSMGFQ-----------------------KVFIALHGRGGEDGTLQGMLELMGLPYTGS 86 + + +Q VF ALHG GEDGT+QG+LE++ +PY G+ Sbjct: 61 ISELMYQSSNTVISSIETFLRSSFNEREQNIVFPALHGTNGEDGTIQGLLEILDIPYVGN 120 Query: 87 GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPS 146 GVM+SA+ +DK+ +K L+ +P + L + +++K +G P VKP+ Sbjct: 121 GVMSSAIGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEETIGYPAYVKPA 180 Query: 147 REGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRI 203 GSSVG+++ L+ A+ AF +++++IE+ + G E ++++G E Sbjct: 181 SLGSSVGINRCANREELEAAIHEAFSFEDKLVIEEEIIGREMQISVVGNEFPKASVVGEF 240 Query: 204 QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD 263 F DY AKY + PA L ++ + +K++ L C G R+D + D Sbjct: 241 IQERQFMDYAAKYTDGKLIQVIPAKLTEKVSELMREVAIKSFDVLNCSGLVRVDYFVTDD 300 Query: 264 GQFYLLEANTSPGMTSHSLVPMAARQAG-MSFSQLVVRILELA 305 +FY+ E NT PG T S+ P + ++ +L+ +++ LA Sbjct: 301 ERFYVNEVNTMPGFTKLSMTPALWEKTDQTTYPELIEKLINLA 343 >UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes RepID=A9KQG5_CLOPH Length = 340 Score = 336 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 123/345 (35%), Positives = 168/345 (48%), Gaps = 54/345 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD---------------------- 41 K+ VL GG S EREVSL+SG+ + L E G + +D Sbjct: 2 KVVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQN 61 Query: 42 -------PKEVDVTQLKSMG-----------------FQKVFIALHGRGGEDGTLQGMLE 77 +E ++T+LK KVF+ALHG GE+G LQ M + Sbjct: 62 PYQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMFD 121 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 + G+ YTGSG + S L+MDK SK++ Q G+ ++ E ++ L Sbjct: 122 IYGISYTGSGYIGSLLAMDKGLSKVIMQKHGIETPDYIVADLTEEQEL--------EKTL 173 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI 197 LP ++KP GSSVG+S V ++ L AL A +++ +VLIE+ + G EF+V IL Sbjct: 174 MLPCVIKPLSCGSSVGVSIVRSQEELGKALDYAKKYENKVLIEELIVGREFSVGILNHHA 233 Query: 198 LPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 LP I I P FYDY KY + CPA LE +Q LK L + R+D Sbjct: 234 LPLIEIIPKTGFYDYTNKYQAGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSRVD 293 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +L DG FY LEANT PGMT SL+P A G+S+S+L IL Sbjct: 294 FLLKEDGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKLCELIL 338 >UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp enzyme n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7C3_9GAMM Length = 309 Score = 336 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 138/302 (45%), Positives = 186/302 (61%), Gaps = 9/302 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 + AVL+GG +AERE+SL SG V + L G +DP V+ + VF LH Sbjct: 10 RFAVLMGGAAAEREISLQSGENVASVLEAAGCPVTRIDPA-VEQWADQLSDIDFVFNLLH 68 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GGEDG LQG+ ++M LPY+GSGV+ SAL+MDK R+K LW G GLP + LT Sbjct: 69 GPGGEDGVLQGLFDVMNLPYSGSGVLGSALTMDKARTKQLWSGMGLPTPDFTLLTADTDW 128 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 L ++ + VKP+ EGSS+GMSK L+ A + A + ++ E ++ Sbjct: 129 SDLIERHGT--------LFVKPALEGSSIGMSKASTPEQLEAAWKRARAYKGGIIAECFV 180 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 +G E+TV+ILG+ LP+IRI+P+ FYD++AKY+SD T +FCP+GL AS EA L AL L+ Sbjct: 181 AGEEYTVSILGDRALPAIRIEPASEFYDFDAKYVSDNTGFFCPSGLTASDEAELSALALR 240 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ + WGR+DVM D G + LLE NT PGMTSHSLVPMAAR M+ + I Sbjct: 241 AFYAVDAAVWGRVDVMRDISGAWQLLEVNTIPGMTSHSLVPMAARADSMTLIDFLSEIYR 300 Query: 304 LA 305 L+ Sbjct: 301 LS 302 >UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria RepID=C3RJR8_9MOLU Length = 346 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 160/343 (46%), Gaps = 38/343 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-----------DPKEVDVTQ 49 M K+ VL GG S+E VS S +VL L + V D K+ D+ + Sbjct: 1 MKQKLLVLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAK 60 Query: 50 LKSMG--------------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSM 95 + F LHG GEDGT+QG+ EL LPY G VM S+++M Sbjct: 61 NTWLDNSSMVEDVYGLLKNQDVAFPVLHGMYGEDGTIQGLFELAKLPYVGCRVMGSSVAM 120 Query: 96 DKLRSKLLWQGAGLPVAPWVALTRAEFEK---------GLSDKQLAEISALGLPVIVKPS 146 DK+ +K + G+P V + + EK + + + + LG+P +K S Sbjct: 121 DKIYTKKILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEIEDYIVRELGMPCFIKAS 180 Query: 147 REGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR---I 203 R GSSVG + + L L A ++D V++E+ + E A+LG + + R I Sbjct: 181 RSGSSVGCYRCDNQTELIGKLSEAAKYDRHVVVEECIDCIELETAVLGNDDVIVSRVGQI 240 Query: 204 QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD 263 P G FY +E+KY +E++ PA ++ + ++ +K + + G R+D LD Sbjct: 241 MPHGEFYTFESKYEDEESKTCIPALVDEQIQEQIRQYAIKVFKAVDGHGLSRVDFFLDKK 300 Query: 264 -GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + YL E NT PG T S+ P G+++ +L+ R++ LA Sbjct: 301 TNKIYLNEINTMPGFTKISMYPQLMNDFGITYPELLDRLIVLA 343 >UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0K0_9FIRM Length = 359 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 112/334 (33%), Positives = 168/334 (50%), Gaps = 32/334 (9%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLRE-----------GGIDAYPVDPKEVDV 47 M++K +AV+ GG S E E+S S + GLRE + + VD +D Sbjct: 5 MSEKKSVAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVDDGIIDF 64 Query: 48 TQLKSM-------------GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALS 94 T+L V+ LHG GEDG +QG+ E+ +PY G V ASA++ Sbjct: 65 TKLDVKNEAESCTIEQCLTDVDIVWSVLHGPYGEDGKIQGLFEMYDVPYVGCNVTASAIA 124 Query: 95 MDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGM 154 MDK+ +K +++ AGL + L E+ +++L I LG P+ VKP+ GSSVG+ Sbjct: 125 MDKVIAKNVFEHAGLKTVKYELLLEKEYRDD-EERELERIEKLGFPMFVKPANMGSSVGI 183 Query: 155 SKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPSGTFYD 211 SK E L+ A+ AFQ+D ++IE+ + G E VA+ G E + I+P FYD Sbjct: 184 SKATDEKKLKKAIEDAFQYDYRLIIEENIIGKEVEVAVFGNGPYEASVAGEIRPRAEFYD 243 Query: 212 YEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLL 269 +AKY S +T PA + Q LQ A + CKG R+D + +D + ++ Sbjct: 244 VDAKYHSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGICRVDSFIKADSNEIFIN 303 Query: 270 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 E NT PG T S+ P +G+S +L+ RI+ Sbjct: 304 EVNTMPGFTEISMYPKLWEVSGISNKELLERIIN 337 >UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P076_9BACE Length = 350 Score = 335 bits (861), Expect = 9e-91, Method: Composition-based stats. Identities = 112/348 (32%), Positives = 162/348 (46%), Gaps = 53/348 (15%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD---------------------- 41 KI VL GG S ER VSL++G V L G + VD Sbjct: 2 KIVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPISE 61 Query: 42 ------PKEVDVTQLKSMG------------------FQKVFIALHGRGGEDGTLQGMLE 77 + D+ +K+ VF+ALHG GEDG +Q + Sbjct: 62 EHKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAFD 121 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 LMG+PYTGSG + SA++MDK +K + + W ++ +D + Sbjct: 122 LMGIPYTGSGYLGSAIAMDKDLTKRMVADV-VSTPGWKTVS------YTADDIDGLVETA 174 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI 197 LP++VKP GSS+G+S L+ AL ++E+++ G E VAIL ++ Sbjct: 175 RLPLVVKPVASGSSIGVSIAHTAEELRTALTEGLALGGRTVLEQYVKGRELQVAILEDKA 234 Query: 198 LPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 LPSI I P FYDYE KY + CPA + E L+ ++ + TLG + R D Sbjct: 235 LPSIEIIPKQGFYDYENKYQPGAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSRAD 294 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +LD+DG+ + LE NT PGMT SLVP A G+ ++ L RI++ + Sbjct: 295 FILDADGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDAS 342 >UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified Gammaproteobacteria RepID=A4A5G2_9GAMM Length = 315 Score = 335 bits (861), Expect = 9e-91, Method: Composition-based stats. Identities = 137/290 (47%), Positives = 176/290 (60%), Gaps = 9/290 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 +IAVL GGTS ER+VSL S VL LR+GG + +D E + + F H Sbjct: 11 RIAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALDTGEPRWWE-RLEDADIAFNIQH 69 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GGEDG QG+L MG+ TGS V+ SAL+MDKLRSK LW+ GLP A + + Sbjct: 70 GVGGEDGVTQGLLASMGVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMVDAHTDA 129 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 L + A +KPS EGSS+GMS+V + + + A A + E +L E+++ Sbjct: 130 AALLSEWGAA--------FIKPSAEGSSLGMSRVDSVDGFKAACEAAAVYGEGILAEEFI 181 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 GPE+TVAILG+ LP IRI+ S FYDYEAKY + T+Y P GL +E L L L+ Sbjct: 182 DGPEYTVAILGDRALPPIRIEASREFYDYEAKYKGNSTRYHIPCGLSDGEEETLCRLALE 241 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 A+ LGC WGR+D+M + G+F LLE NT PGMT HSLVPMAA+ AGMS Sbjct: 242 AFAALGCSIWGRVDLMRNRRGEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291 >UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B4D1Z2_9BACT Length = 315 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 171/310 (55%), Gaps = 20/310 (6%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 KIAVL+GG +ER+VSL SGA V LR G D VD D + G F Sbjct: 14 NKKIAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDF--IVPAGTDVAFNV 71 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 +HG GEDG +Q +LE G+ YTG GV S L++DK+ +K +Q +P A + L Sbjct: 72 IHGTFGEDGQIQRILESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEILRDG- 130 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 L LP +VK +EGSSVG+ V E + D +R A+ + +E+L+E Sbjct: 131 -----------ANPTLPLPYVVKAPKEGSSVGVFIVREEAKVADTMREAWSYGKELLVED 179 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY------LSDETQYFCPAGLEASQEA 235 +++G E TV +LG++ LP I I+P+ FY+++ KY ++ CPA + Sbjct: 180 FINGRELTVGVLGDQALPIIEIKPAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTR 239 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 +Q + L A + + + R+DV+L G+ Y+LE NT PGMT SL+P AA AG+S++ Sbjct: 240 RVQEVALAAARAIHLETYCRVDVLLTGAGEPYVLEINTIPGMTQVSLLPEAAAAAGISYA 299 Query: 296 QLVVRILELA 305 +L R++EL+ Sbjct: 300 ELCARVIELS 309 >UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W6_9ZZZZ Length = 343 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 129/347 (37%), Positives = 175/347 (50%), Gaps = 53/347 (15%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA----------------------- 37 ++ KI VL GG S ER+VSL SGA + L G Sbjct: 3 LSMKITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDAFTSDGN 62 Query: 38 --YPVDPKEVDVTQLKSMGF----------------QKVFIALHGRGGEDGTLQGMLELM 79 Y V + D+ L++ VF+ALHG GEDG++Q L M Sbjct: 63 FMYTVPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSM 122 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 G+PYTGS A ++MDK SKLL++ G+P A + L + + G + L Sbjct: 123 GIPYTGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKKGDSTDG-----------IPL 171 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILP 199 P +VKP GSSVG+S V + AL AL A+Q++E+VL E + G EF+V +L LP Sbjct: 172 PCVVKPCSCGSSVGVSIVDTKEALAGALETAYQYEEKVLAEDKICGREFSVGVLLGRALP 231 Query: 200 SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 +I I+P FYDYE KY S T+ CPA L ++ A+L AL LK LG + RID + Sbjct: 232 AIEIRPKDGFYDYERKYQSGMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDFI 291 Query: 260 LDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + G+F LEANT PGMT SL+P A AG+ + L + I + A Sbjct: 292 REEKTGKFICLEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338 >UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogaceae RepID=DDL_FERNB Length = 316 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 178/314 (56%), Gaps = 17/314 (5%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG-FQKVFIALH 63 + VLLGG S ERE+S+ SG + LR G +D + + +L + + +F LH Sbjct: 3 LGVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSELKKYDALFNILH 62 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQG--------AGLPVAPWV 115 G GEDG +Q +L+ +G+PYTGSGV S ++ DK L + + + + ++ Sbjct: 63 GTFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFL 122 Query: 116 ALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE 175 ++ EFE+ K +GLP +VKP +EGSS+G ++ L DAL+ F++ + Sbjct: 123 LISSEEFEES---KIYMIEEKIGLPCVVKPRKEGSSIGTHICFSKEELLDALKNEFKNYD 179 Query: 176 EVLIEKWLSGPEFTVAILG----EEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEA 231 E+++++++ G E TV+++ +LP + ++P FYDYEAKY T++ PA L+ Sbjct: 180 EMIVQEYIKGKEITVSVIDINGTPTVLPILELRPKKLFYDYEAKYTDGMTEFIIPAELDG 239 Query: 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 + VLK + +LGCK + RID ++ DG FY LE NT PGMT S +PM+A G Sbjct: 240 ETTEKINHAVLKIYKSLGCKHFSRIDGIV-KDGVFYFLEVNTLPGMTELSDLPMSANAFG 298 Query: 292 MSFSQLVVRILELA 305 +SF +LV I++ A Sbjct: 299 ISFDELVDLIIKEA 312 >UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LL63_9FIRM Length = 311 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 120/307 (39%), Positives = 173/307 (56%), Gaps = 9/307 (2%) Query: 1 MTDK---IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV-DVTQLKSMGFQ 56 M K +AVL+GG S E ++S +G A+L L G A V+ + QLK++G + Sbjct: 1 MITKNNTVAVLMGGVSREADISRKTGTAILQALLSLGYHAVKVEYNPSCVLKQLKAVGAE 60 Query: 57 KVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA 116 VFIALHG+ GEDGT+Q +LEL +PYTGSGV +SA++MDK+ S +++ AG+ +A Sbjct: 61 VVFIALHGKYGEDGTIQSILELSKIPYTGSGVSSSAITMDKIISSRVFKDAGVRMA---- 116 Query: 117 LTRAEFEKGLSDKQLAEISA-LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE 175 ++ + K D I PV++KP+ EGS++G+ V + L++AL+ F + Sbjct: 117 FSKPYYLKNGIDTVAESIEKNFKFPVVLKPACEGSTIGLEIVYEKEKLKEALKRVFAIES 176 Query: 176 EVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 +L E +L G EFT+A+L + LP I+I P YD+ +KY S T Y PA L + Sbjct: 177 RILAEAYLDGKEFTIAVLNGKALPIIQICPHSGQYDFHSKYTSGATDYIVPAPLPGAAAD 236 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 + + + + C G R D D G +LLEAN+ PGMT SLVP AA GM F Sbjct: 237 EMTRMAILGYEAAECSGVVRFDFRTDKRGTPFLLEANSIPGMTETSLVPKAAAAIGMDFP 296 Query: 296 QLVVRIL 302 L IL Sbjct: 297 SLCENIL 303 >UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycetales RepID=DDL_MYCUA Length = 373 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 111/360 (30%), Positives = 168/360 (46%), Gaps = 64/360 (17%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------DPKEVDVT-- 48 ++AV+ GG S E +S S ++L L + + +P + +T Sbjct: 12 RVAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAITDR 71 Query: 49 -----------------------QLKSMGF---------QKVFIALHGRGGEDGTLQGML 76 QL S+ VF LHG GEDGT+QG+L Sbjct: 72 RLPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLL 131 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 EL G+PY G+GV+ASA MDK +K LW AGLP+ P L + E+ Sbjct: 132 ELAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSR-----QSLDREELQR 186 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE- 195 LGLP VKP+R GSS+G+S+V + + L A+ A +HD +V++E ++G E +L Sbjct: 187 LGLPAYVKPARGGSSIGVSRVSSFDELPAAIAAARRHDPKVIVEAAINGRELECGVLEFP 246 Query: 196 ----EILPSIRIQPSG------TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAW 245 E I+ +G FYD+E KYL D + PA +E ++ L ++A+ Sbjct: 247 DGRLEASTLGEIRVAGVRGREDGFYDFETKYLDDAAELDVPAKVEDDVADAVRQLAIRAF 306 Query: 246 TTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + C+G R+D L DG + E NT PG T+ S+ P +G+ + L+ ++E A Sbjct: 307 EAIDCQGLARVDFFLTDDG-PVINELNTMPGFTTISMYPRMWVASGVDYPTLLATMVETA 365 >UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobacteria RepID=DDL_CAUSK Length = 322 Score = 333 bits (854), Expect = 5e-90, Method: Composition-based stats. Identities = 127/314 (40%), Positives = 164/314 (52%), Gaps = 22/314 (7%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 IAVLLGG SAEREVSL +GAA A L G VDP + L ++ VF Sbjct: 11 NHHIAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVDPGKDVAQVLTALAPDLVFNG 70 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHGR GEDG +QG+LE +GL YT SGV+ASAL+MDK +SK + AG+PV R + Sbjct: 71 LHGRWGEDGCVQGVLETLGLAYTHSGVLASALAMDKAKSKAVLAAAGIPVPGGGLFDRHD 130 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA-----ENALQDALRLAFQHDEE 176 +G + P +VKP+ EGSSVG+S V L + E+ Sbjct: 131 VAQG---------HVMPPPYVVKPNAEGSSVGVSLVFEGANGPPRQLAAP---DWAFGEQ 178 Query: 177 VLIEKWLSGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEAS 232 V++E ++ G E VA++GE L I+ S FYDY+AKY + + PA + + Sbjct: 179 VMVEPYIPGLELAVAVVGESNGPRALAVTEIRSSTGFYDYDAKYSQGGSIHVLPAPIPDA 238 Query: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAG 291 L T LGC+G R D D + LLE NT PGMT SLVP A AG Sbjct: 239 VRDRALHLAKLGHTALGCQGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAG 298 Query: 292 MSFSQLVVRILELA 305 +SF +LV I+E A Sbjct: 299 VSFDRLVFWIVEDA 312 >UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcales RepID=DDL_THEEB Length = 343 Score = 332 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 111/334 (33%), Positives = 160/334 (47%), Gaps = 32/334 (9%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREG----GIDAYPV------------------- 40 ++ +L GG S E EVS+ S AA+ G + P+ Sbjct: 5 RVGLLFGGRSREHEVSVVSAAAIAQAFAAGDNGDRYEVIPIYIEKDGRWRHTERVGIPEG 64 Query: 41 DPKEVDVTQLKSM--GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKL 98 E + Q ++ F +HG GEDGT+QG+LELM PY GSGV ASA+ MDK+ Sbjct: 65 TAPESSLWQFPAVVDTIDVWFPIVHGPNGEDGTIQGLLELMQRPYVGSGVAASAIGMDKI 124 Query: 99 RSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQL---AEISALGLPVIVKPSREGSSVGMS 155 K ++ GLP P+VAL R++ + LG P VKP+ GSSVG+S Sbjct: 125 LMKTVFGAIGLPQVPYVALQRSDLWSDPCRYNHLCDRIETELGYPCFVKPANLGSSVGIS 184 Query: 156 KVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDY 212 K L AL +A + D +++E + E A+LG + I S FYDY Sbjct: 185 KAKNRQQLTTALEVAAELDRRIIVEAGVVARELECAVLGNDKPQASVVGEITYSSEFYDY 244 Query: 213 EAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM-LDSDGQFYLLEA 271 E KY Q PA + + +++L L+A+ LG G R D + S G+ + E Sbjct: 245 ETKYTDGRAQLHIPAEIPPAVSEQIRSLSLQAFQALGAAGLARFDFFYVPSTGEVLINEV 304 Query: 272 NTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 NT PG T+ S+ P +G+SF +LV R+++LA Sbjct: 305 NTLPGFTALSMYPQLWAASGLSFPELVHRLVQLA 338 >UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FAD8 Length = 371 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 112/355 (31%), Positives = 166/355 (46%), Gaps = 55/355 (15%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM----------- 53 +AVL GG S+E VS + A V+ + + P+ + V ++ Sbjct: 10 VAVLFGGRSSEHAVSCVTAAGVIRAIADDAYRVLPIGITKAGVWRIVEDWSTMAFDPDNM 69 Query: 54 ----------------------------------GFQKVFIALHGRGGEDGTLQGMLELM 79 F LHG+ GEDGTLQG+ EL Sbjct: 70 PEVVDNGTEIIPPISAQGSPLLQRDAEGNYSELGSVDVYFPLLHGQYGEDGTLQGLFELS 129 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 + GSGV ASA SMDK +K L AG+P PW +T +E ++ Q I+ LGL Sbjct: 130 DTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVTETMWEADQAEAQ-DRITGLGL 188 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILP 199 PV VKP+R GSS+G+S+V + L ALR AF+HD +V++E + G E A+LG Sbjct: 189 PVFVKPARAGSSMGVSRVESAEGLDQALRSAFEHDSKVIVEPQVVGREIECAVLGSVHDR 248 Query: 200 SIRIQPSGT--------FYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGC 250 +R+ G FYD+EAKYL+ + Q CPA ++ + A +Q L + + C Sbjct: 249 EVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCPARVDETTTARIQELSAQVFRLFDC 308 Query: 251 KGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G R+D + G+ + E NT PG T S P ++G+ + L+ ++ +A Sbjct: 309 TGLSRVDTFVTDAGEVLINEINTLPGFTPTSAYPFMWSKSGIEYPALISELITIA 363 >UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFD6_KOSOT Length = 305 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 171/310 (55%), Gaps = 17/310 (5%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM-GFQKVF 59 + +I VL GG S ER +SL SG+ V+ L + G D + ++T+L + VF Sbjct: 4 LRRRITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAFDLRADNITELAKLRDTDLVF 63 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG+ GEDG +Q +LEL G+ Y GS + SA+ +K + L + + W +T Sbjct: 64 IALHGKFGEDGKIQSLLELFGIEYIGSDSLVSAICFNKNLTYKLL-SNTITMPRWKTITS 122 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 E +G P ++KP+ EGSS+G+ LQ+ + + +++ Sbjct: 123 EEELEGWK----------HFPAVIKPANEGSSIGVYICDTFEELQNKTTKVLKEYKTLIL 172 Query: 180 EKWLSGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+++ G E T++I+ + +LP + ++P FYDYEAKY + T++ PA ++ + Sbjct: 173 EEYIKGRELTISIIEKGGQPVVLPILELKPKRRFYDYEAKYTAGLTEFIVPAPIDDKLKE 232 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 ++ L + +T LGC+ + RID +L + QFY LE NT PG+T S +P++AR AGM F Sbjct: 233 EIKKLSKRIFTALGCRHFARIDGIL-KENQFYFLEVNTIPGLTDLSDLPVSARAAGMGFE 291 Query: 296 QLVVRILELA 305 +L+ I++ A Sbjct: 292 ELIDLIVKEA 301 >UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y930_9FIRM Length = 350 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 117/348 (33%), Positives = 163/348 (46%), Gaps = 48/348 (13%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--DP-----------KEV 45 M +K +AVL GG S E VSL+S A VL L + DP E+ Sbjct: 1 MNEKLNVAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEI 60 Query: 46 DVTQL------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 + Q +++ F LHGR GEDGTLQGM EL + Sbjct: 61 EADQWHTASDQRLRLTLARRNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFELFHI 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 P+ G G+ AS L MDK S L + G+ V+P+V +E D++ + L LP Sbjct: 121 PFVGCGMDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEI-----DQKRESLKRLHLPC 175 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEI 197 VKP+R GSS+G++K+ L A A +HD +LIE+ +SG E +IL G + Sbjct: 176 FVKPARGGSSIGITKINTWEELDAACACAAKHDRRILIEEAVSGEEIGCSILETPDGLVL 235 Query: 198 LPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 RI + F+DYE KY+ + CPA L ++ L K W C+G R+D Sbjct: 236 GAVDRIHLNSDFFDYEEKYVDTHAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVRVD 295 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L D + E NT PGMT+ S P QAG+SF ++ ++E A Sbjct: 296 CFLTPDQRILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEA 343 >UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteobacteria RepID=DDL_BLOPB Length = 368 Score = 331 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 103/340 (30%), Positives = 163/340 (47%), Gaps = 42/340 (12%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP--VDPK------EVDVTQL------ 50 I ++ GG S E E+SL S + + + +A +D K ++D L Sbjct: 6 IGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKDIDFNDLSYHKDE 65 Query: 51 ---------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 + F +F +HG GEDG LQG+L +M LP+ GS V+ Sbjct: 66 KISILLQNCPYPFKFHTKNINILLKFDVIFPVVHGTLGEDGALQGLLCMMNLPFVGSNVL 125 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 +S++ MDK SK L + AGL V P+ + + D ++ GLP+ VKPS +G Sbjct: 126 SSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSI---FGLPLFVKPSNQG 182 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQP 205 SS+G+SKV AL AF ++LIE + G E A+LG + + I Sbjct: 183 SSIGVSKVTKCKDFNLALIKAFSFSNKILIEPAIIGRELECAVLGNDNPKISVCGEVILS 242 Query: 206 SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ 265 FY Y KY+ + Q PA + + +++ + L+A+ L C G R+DV L+ D + Sbjct: 243 DNNFYTYHDKYVKRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMARVDVFLNLDNK 302 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ E NT PG T S+ P +G++ +L+ +++ELA Sbjct: 303 IFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELA 342 >UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus Pelagibacter RepID=DDL_PELUB Length = 304 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 167/307 (54%), Gaps = 7/307 (2%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 MT KI +L GG S ER +SL++G V L + G +P + + S +F Sbjct: 1 MTKKILILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFN 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG+ GEDG +Q +LE +PYT SGV+AS+++MDK SK ++ + ++ Sbjct: 61 ALHGQFGEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFNHK 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 K + L PV+VKP EGSSV + N L++ L++ + E+LIE Sbjct: 121 ---KNKLNIIKLIEKNLKFPVVVKPINEGSSVHVYICDKTNILKN-LKVLKSY-NEILIE 175 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY-LSDETQYFCPAGLEASQEANLQA 239 +++ G E VAI+ + L +I ++P FYDYEAKY S +T++ P L + A + Sbjct: 176 EFIPGREIQVAIMNNKSLGAIELEPRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITG 235 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + A +GCKG R D +G+FYLLE NT PGMT SLVP A+ G+SF +L+ Sbjct: 236 IARAAHKIIGCKGVTRSDFKF-FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIE 294 Query: 300 RILELAD 306 IL+ A Sbjct: 295 WILKDAS 301 >UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB14_9ACTN Length = 325 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 132/310 (42%), Positives = 175/310 (56%), Gaps = 14/310 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-DAYPVDPKEVD-VTQLKSMGFQKVFIA 61 K+AVL GG S ERE+SL SG A L E G VDP E +++L++ + FIA Sbjct: 16 KVAVLAGGISDEREISLASGKNAAAALTEAGYGTVEMVDPGERGFLSRLENGNYDVAFIA 75 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GGEDG Q +LE +G+PYTGS +AS ++MDK SKLL++ AGLPVAP V TRA+ Sbjct: 76 LHGFGGEDGMTQHILEFLGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRAD 135 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 ++ +G VKP GSS G+S V + L A+ LAF+H ++V++E Sbjct: 136 MPSIDEIVEI-----VGPQSFVKPVVNGSSYGISLVKDPSELTAAIELAFEHGDKVMVEH 190 Query: 182 WLSGPEFTVAILGE----EILPSIRIQ--PSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 + G E +VA LG+ LP + I FYD E KY + PA L A Sbjct: 191 RVFGVECSVAALGDGETLRALPVVEIMMPQQSEFYDLEVKYADPNDIHRIPAQLPEDVYA 250 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 +Q + +A LG G R DV++ DG +LE N PGMTS SLVP AR AG++FS Sbjct: 251 QVQDIACRAHEALGLFGISRTDVIVTEDG-PIILETNNIPGMTSESLVPDEARHAGIAFS 309 Query: 296 QLVVRILELA 305 L ++ELA Sbjct: 310 DLCAELVELA 319 >UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN Length = 350 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 161/350 (46%), Gaps = 49/350 (14%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------DVTQLK 51 M +A+L GG S+E EVSL S ++VL L + + ++ ++ Sbjct: 1 MKKLTVAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIR 60 Query: 52 SM---------------------------------GFQKVFIALHGRGGEDGTLQGMLEL 78 + VF LHG+ GEDGT+QG+LEL Sbjct: 61 NDSWHQSEKCVPAFLSPCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGLLEL 120 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 G+P+ G ++SA+ MDK + L +G+G+ VA+ + A LG Sbjct: 121 AGIPFVGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAVYPNTDLATVQ----AATEPLG 176 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-- 196 P+ VKP++ GSS+G++K + + L + A QHD++V+IE+ ++G E A+LG Sbjct: 177 FPLYVKPAKAGSSIGITKAYSLSELFFGIENALQHDDKVVIEENITGFEVGCAVLGNREV 236 Query: 197 -ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 + I+ F+DY KY + PA ++ ++ + GC+G+ R Sbjct: 237 IVGEVDEIELLQGFFDYTEKYSLETAHIHVPARIDEELAHKIKQTATHLYQVFGCRGFAR 296 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +D+ + DG E NT PG TS S P R AG+S+ +L+ ++ LA Sbjct: 297 VDMFVTPDGDIVFNEVNTIPGFTSKSRYPSMLRAAGISYKELLDTLIMLA 346 >UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacillus RepID=DDL_LACDA Length = 362 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 110/349 (31%), Positives = 178/349 (51%), Gaps = 44/349 (12%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------ 40 MT K + ++ GG S+E EVS+ S + + + D +P+ Sbjct: 1 MTKKTQVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVL 60 Query: 41 ---------DPKEVDVTQLKSM----GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 + K +++ L + +F +HG GEDG LQG+ L+ P+ G Sbjct: 61 EEPGYMVEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP---VIVK 144 V+A+A++MDK +K+L Q AG+PVA WV++ R E+E + K + + L + VK Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVK 180 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR-- 202 PS +GSSVG++ V ++ +AL AF++D++VL+E+ + G E A+LG + P + Sbjct: 181 PSNQGSSVGITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDH-PVVSGV 239 Query: 203 ---IQPSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I T+Y YE KY ++ T PA + A +Q LK + C G R+D Sbjct: 240 GQIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDS 299 Query: 259 ML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 ML +SDG+ E N PG T+ S+ P +AG+S+ L+ R++ LA+ Sbjct: 300 MLRESDGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLAE 348 >UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteobacteria RepID=C6XGZ9_LIBAP Length = 300 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 6 AVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGR 65 AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 Query: 66 GGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKG 125 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS- 120 Query: 126 LSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA--LQDALRLAFQHDEEVLIEKWL 183 + P ++KP + GSS+G+ + + + L ++ H +++LIE+++ Sbjct: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 Query: 184 SGPEFTVAILGEEILPSIRI-QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 Query: 243 KAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ + Sbjct: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 Query: 302 LELAD 306 +E A Sbjct: 293 VEDAS 297 >UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiales RepID=A9KKE7_CLOPH Length = 353 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 161/348 (46%), Gaps = 44/348 (12%) Query: 1 MTDK-IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------- 40 M K I VL GG S+E EVS S V+ + D V Sbjct: 1 MDKKTIVVLFGGQSSEHEVSCVSAVTVINHIDLDHYDIVLVGITKEGKWLLTGSVEDITS 60 Query: 41 ----DPKEVDV---------------TQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 D K+ + +++ VF LHG GEDGT+QG+LEL G+ Sbjct: 61 GVWRDGKKTAILSPDRSKPSLLIMEDNKVEYQKVDVVFPVLHGLFGEDGTVQGLLELAGV 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY G GV+AS++SMDKL +K++ G+ A + + E E+ + E + + PV Sbjct: 121 PYVGCGVLASSVSMDKLYTKIIVDSLGIRQAAYEPVYAKELEEMNKVVERIE-NRISYPV 179 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EIL 198 +KPS GSS G++K + L L+ A +HD ++L+E+ + G E A+LG + Sbjct: 180 FIKPSNAGSSKGITKAHNRDDLIVGLKEAAEHDRKILVEETIVGREIECAVLGGMEAKAS 239 Query: 199 PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I + FYDY+AKY + +++ L + + +K + + R+D Sbjct: 240 GVGEILAAAEFYDYDAKYNNADSKTIISPELPEGKAQEISDAAVKIFRAVDGYSLSRVDF 299 Query: 259 MLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L+ D + E NT PG T+ S+ PM G++ QLV ++++ A Sbjct: 300 FLEKDTNEIVFNEINTLPGFTAISMYPMLWEAKGIAKPQLVEKLIQTA 347 >UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pallidum RepID=DDL_TREPS Length = 396 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 113/344 (32%), Positives = 166/344 (48%), Gaps = 45/344 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLA-------------------------GLREGGIDAY 38 + +L GG SAE +VS+ S V L + Sbjct: 3 HVTLLYGGRSAEHDVSVRSARFVARTLCLQHTVMLIGITRRGVWYAQPACALEQLCTGTV 62 Query: 39 PVDPKEVDVTQL-------KSMGF---------QKVFIALHGRGGEDGTLQGMLELMGLP 82 + +E + ++ + F VF LHG GEDGT+QG+LE++ +P Sbjct: 63 ALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVTDVVFPVLHGSYGEDGTVQGLLEMLQVP 122 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y G GV ASAL+MDK+++K+LWQ AGLPV P+V + + + + + LG P+ Sbjct: 123 YVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYPLF 182 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILP 199 VKP++ GSSVG S V L A+ AFQ DE VL+E+++ E A+ G + Sbjct: 183 VKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPYTVHG 242 Query: 200 SIRIQPSGTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 + + G FYDYE KY + A LE +Q + L L+A+ LG G R+D Sbjct: 243 AGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARVDF 302 Query: 259 MLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 L G+ Y+ E NT PG TS SL P + AG++ L+ ++L Sbjct: 303 FLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346 >UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPX6_9FIRM Length = 370 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 112/357 (31%), Positives = 166/357 (46%), Gaps = 53/357 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLRE----GGIDAYPV----------------- 40 ++A+ GG S+E EVS S +A L L E G + +PV Sbjct: 6 KLRVALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPEA 65 Query: 41 -------------------DPKEVDVTQLKS-----MGFQKVFIALHGRGGEDGTLQGML 76 D + V L+ + +HG+ GEDGT+QG+ Sbjct: 66 MADGSWEQGADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTIQGLF 125 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 E+ +PY G GV+ASA+ MDK + + AG+P W + RAE E+ + +A Sbjct: 126 EMARIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDRAEAA 185 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE 196 LG P+ VKP+ GSSVG+SK AL AL +A + D++V++E+++ G E A +G Sbjct: 186 LGYPIFVKPANAGSSVGISKAADRAALDAALDVALREDDKVVLEEFIDGQEVECAAIGNP 245 Query: 197 ILP-------SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLG 249 P I FY Y+ KY + +Q PA L + ++A KA+ LG Sbjct: 246 DDPANITTTRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLSEEKLDEVKAEARKAYLALG 305 Query: 250 CKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C G R D ++ G+ E NT PG T+ S+ P G++F QLV R+L+LA Sbjct: 306 CAGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLVDRLLQLA 362 >UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella RepID=DDL_LEGPA Length = 364 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 158/349 (45%), Gaps = 44/349 (12%) Query: 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-----------DPKEVDV 47 M+ + +L GG S E EVSL S A+VL L P+ D ++ Sbjct: 1 MSKPVNLVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLA 60 Query: 48 TQLK--------------------SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 K ++ + VF +HG EDG LQG+LEL G+ Y G Sbjct: 61 CSDKLPVVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCD 120 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 V++SA+ MDK ++ L GL A + L+ S G P+ VKP Sbjct: 121 VLSSAIGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCS 180 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI---------L 198 GSSVG+ K + L A+ A ++DEE+L+E+++ G E +A+L I + Sbjct: 181 LGSSVGIHKANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMV 240 Query: 199 PSIRIQPSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 I++ +Y Y AKYL S +T PA L S E L+ ++ L CKG R+D Sbjct: 241 GEIKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVD 300 Query: 258 VML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + D + Y E NT PG TS S+ P + G+++ L+ ++ LA Sbjct: 301 FFVNDKTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLLDELINLA 349 >UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B634_THEAS Length = 316 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 114/309 (36%), Positives = 165/309 (53%), Gaps = 12/309 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD--VTQLKSMGFQKVFIA 61 K+ V GG S EREVSL SG AV L G +D V + S F VF+A Sbjct: 2 KVLVAYGGDSPEREVSLRSGEAVKEALSSLGWTVEGLDADSPLRVVERALSGAFDLVFVA 61 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDGTLQ +L+ +PYTG A MDK ++ + G+ V + Sbjct: 62 LHGGWGEDGTLQCLLDTHRIPYTGPRWGACMACMDKEITRGVLLARGVRVPEGIP----- 116 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 F+ + L E+ ++VKP R GS+VG+ V + L AL AF++D +++E+ Sbjct: 117 FDGSMDQGVLLELLRRWGRLVVKPCRCGSTVGIGIVDHPSRLDRALDEAFRYDRRLVVER 176 Query: 182 WLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 ++ G E TVA+ G + LP++ I+P FYDY +KY T+Y CPA L + + Sbjct: 177 FIEGRELTVAVFDTPEGPKALPTVEIRPRSGFYDYSSKYTKGMTEYLCPAPLSEQEAEAV 236 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 ++A+ +GC + R+DV L+ G+ +LE NT+PGMTS SLVP AA G F + Sbjct: 237 ARAAVEAYRAMGCSVYSRVDVRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFPE 296 Query: 297 LVVRILELA 305 ++ RI E + Sbjct: 297 MLRRICEAS 305 >UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N436_9BACT Length = 702 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 121/305 (39%), Positives = 169/305 (55%), Gaps = 13/305 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 KI +LLGG S ERE+SL SG+AV LR GG D D E + + V+ LH Sbjct: 316 KINLLLGGASNEREISLKSGSAVAQALRNGGFDVTVTDVTECRLLP-EMREADVVYPVLH 374 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG +Q ++E GL + GSG AS L+MDK+ +K L G+P A W +TR E Sbjct: 375 GGFGEDGRIQKVMEEAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTRDRRE 434 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 L LP+I+K EGS+ G+ KV AL F E+L+E+++ Sbjct: 435 L---------PQNLKLPLILKVPMEGSTFGIVKVERAEEWDAALEKEFAMAGELLVEEYI 485 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYL--SDETQYFCPAG-LEASQEANLQAL 240 G E TV I+ E+LP+I I+ FYDY+AKY+ T+YFCPA L A Q A+ Sbjct: 486 DGIEITVPIVNGEVLPAIEIKSPHGFYDYDAKYVYKDGHTEYFCPARSLSAEQVADASRQ 545 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 +K + GC+ R+D ++ DG Y+LE N+ PG T+ SLVP AA+ +G+SF ++ Sbjct: 546 AVKFYLGAGCRDILRVDFIVGKDGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMTAT 605 Query: 301 ILELA 305 ++ A Sbjct: 606 LVYAA 610 >UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH51_9BACT Length = 1029 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 169/306 (55%), Gaps = 14/306 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 KIAVL GG S+ER +SL S AV LR+GG + +D + + + S VF LH Sbjct: 731 KIAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDITDFSLPAI-SKDIDLVFPVLH 789 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG +Q ++E G PY G + +S L +DK + + +GLPV V L + E Sbjct: 790 GEFGEDGQVQKLIEGQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKDEE 849 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + LP +VKP+R+GSS+ +S V E L+ A+ LAF++D+ VL+E + Sbjct: 850 ---------ISQNITLPCVVKPNRQGSSISLSLVEKEGDLRKAIDLAFENDDTVLVESFF 900 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYL--SDETQYFCPA-GLEASQEANLQAL 240 G E TV ++ + L + I P F+DY+AKY +TQY CP + L+ Sbjct: 901 KGIECTVGLIDGKALSVVEIIPPEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLKKC 960 Query: 241 VLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 +++ L + R+D++ + D +F +LEANT PG TS SL+P AA++ G+SF++L Sbjct: 961 GEESFKVLKGRHLMRVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTELCC 1020 Query: 300 RILELA 305 + + A Sbjct: 1021 GLAKKA 1026 >UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria RepID=C1F9Q0_ACIC5 Length = 400 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 102/264 (38%), Positives = 145/264 (54%), Gaps = 10/264 (3%) Query: 52 SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPV 111 ++ +F LHG GEDGT+QG+LEL G+ Y GSGV+ SA MDK K L+ A LP+ Sbjct: 123 ALQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKLPI 182 Query: 112 APWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF 171 V R E+EK +AL PV VKP+ GSSVG+SK L+ A+ LA Sbjct: 183 TKHVTFLRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIELAA 242 Query: 172 QHDEEVLIEKWLSG-----PEFTVAILGE---EILPSIRIQPSGTFYDYEAKYLSDETQY 223 D ++++E+ + G E VA+LG E I P FYDYEAKYLS+ + Sbjct: 243 GFDRKIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEGSVP 302 Query: 224 FCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS--DGQFYLLEANTSPGMTSHS 281 PA L +Q ++ + + A+ C G R+D +++ G+ YL E NT PG TS S Sbjct: 303 IIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFTSIS 362 Query: 282 LVPMAARQAGMSFSQLVVRILELA 305 + P +G+ +S+L+ R++ELA Sbjct: 363 MYPKLWEASGLPYSKLIDRLIELA 386 Score = 66.6 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV 40 M +I +L GG S E EVSL S A++L + + P+ Sbjct: 1 MKKLRIGILFGGRSGEHEVSLLSAASILKAIDRKKYEVVPI 41 >UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TN08_9BACT Length = 308 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 118/306 (38%), Positives = 164/306 (53%), Gaps = 13/306 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK--EVDVTQLKSMGFQKVFIA 61 +I+VL GG S ER VSL+SG V GL+ G +D E + L + F+A Sbjct: 2 RISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSSPEALFSFLAGDRPELCFVA 61 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG LQ +L++ G+PYTGSG A++MDK SK + AGL V VA+ E Sbjct: 62 LHGGWGEDGRLQAVLDMAGVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDVPWGVAVHPGE 121 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + K L++ L +VKP GS+V V E+ L+ AL A++ + L+E Sbjct: 122 GSSPM--KALSKWGTL----VVKPCCGGSTVATYIVSEEDELRKALSSAWELENRALVEA 175 Query: 182 WLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 +++G E TV ++ + P + I P G FYDY AKY ++Y PA LE S + Sbjct: 176 YVAGRELTVTVVEDRGIPRAFPIVEILPDGEFYDYRAKY-GGGSRYVSPADLEPSVVEVV 234 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 A GC + R+D+ LD + ++LE NT PGMTS+SLVP AA G SF L Sbjct: 235 SRSAEIAHRVSGCSIYSRVDIRLDGKNRPFVLEINTVPGMTSNSLVPKAAMAGGFSFPDL 294 Query: 298 VVRILE 303 + I+E Sbjct: 295 LDHIVE 300 >UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWP4_9CLOT Length = 293 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 165/298 (55%), Gaps = 8/298 (2%) Query: 9 LGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-VDVTQLKSMGFQKVFIALHGRGG 67 +GG S+ERE+SL SGA V L + V E D+ F+ALHG+ G Sbjct: 1 MGGISSEREISLKSGAGVFESLDREKYEPIKVVIDEKTDIITKIPDDVDFAFLALHGKFG 60 Query: 68 EDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLS 127 EDG +Q +LE +PY+G G ++SA+ MDK SK + + +G+P A W+ + K + Sbjct: 61 EDGCVQSVLETRDIPYSGCGPLSSAMCMDKNISKKICKASGIPTADWITV------KSIE 114 Query: 128 DKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPE 187 + I +G PV VKP+ GSSV + + ++DA+R + D EV+IE++L G E Sbjct: 115 EIDYDRIEEMGYPVFVKPNSGGSSVATFMIKEKAGIEDAVRQGLEVDTEVMIEQYLPGEE 174 Query: 188 FTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTT 247 T IL E+ P++ I+ F+D+EAKY SD LE S + L W Sbjct: 175 CTSFILDGEVFPTVSIKSEQEFFDFEAKYSSDNGAVEEVVYLEESLQNKLNGYSRMCWDA 234 Query: 248 LGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C+ + R+D ++ S+G Y+LE NT PG+T+ SL+P +A G+S+SQL+ +++ + Sbjct: 235 FNCRAYVRVDFII-SNGVPYVLELNTLPGLTATSLIPRSAAARGISYSQLLDKLISCS 291 >UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B158 Length = 342 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 102/338 (30%), Positives = 161/338 (47%), Gaps = 36/338 (10%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA------------------YPVDPKEV 45 K+ ++ GG S E VS S + + D + D Sbjct: 2 KLLLVCGGQSTEHAVSRMSCVNIYKNADKSKYDIKIAGITKEGEWYDLVSTDFSSDSWLE 61 Query: 46 DVTQLKSM-----GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 T++ F VF LHG+ GEDGT+QG+LE+ +PY G VMAS +MDK+ + Sbjct: 62 GATKITDHFTFLKSFDVVFPVLHGQFGEDGTIQGLLEMAQVPYVGCRVMASCTAMDKIYA 121 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGL---------SDKQLAEISALGLPVIVKPSREGSS 151 K L+ A +P P + + + +K + + ++ + LG P VK SR GSS Sbjct: 122 KKLFDQAHIPQVPSLYVKKRYDDKLVVVDDEGRESFNVEMEIYTHLGFPCFVKASRSGSS 181 Query: 152 VGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR---IQPSGT 208 VG KV + L L A +D V++EK ++ E A++G + + + R I P G Sbjct: 182 VGCYKVNSLTELLPRLHEAATYDRHVVVEKAINATELECAVIGNDDISASRVGQILPHGE 241 Query: 209 FYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFY 267 FY YE+KY +++ PA ++ S + ++ +KA+ + G R D D+D G Y Sbjct: 242 FYTYESKYEDEQSATCIPARVDQSIQDYIRQAAVKAFKAVDGTGLARCDFFYDNDTGNVY 301 Query: 268 LLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L E NT PG T+ S+ P + AG+ L+ +++LA Sbjct: 302 LNEINTMPGFTNISMYPQLMKDAGLDTPALIDELIKLA 339 >UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacillales RepID=DDL_LACRD Length = 378 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 167/350 (47%), Gaps = 49/350 (14%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------ 40 MT K IA+L GG S+E +VS S + L + D Sbjct: 1 MTQKLHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIF 60 Query: 41 --DPKEVDVTQL-----------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 +P++ V + + F +HG GEDGT+QG+ +L+ Sbjct: 61 DGEPEDQVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNK 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY GS + ASA+S DK +K + AG+ P+V +T + ++ L Sbjct: 121 PYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNLTF-- 178 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGP-EFTVAILGEEI--- 197 VKP+++GSSVG+ +V + AL AF++D ++L+E+ ++ P E ++ILG E Sbjct: 179 -VKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 237 Query: 198 --LPSIRIQPSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGWG 254 L ++R+ FYDYE K++ F P L + + LKA+ LG KG Sbjct: 238 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 297 Query: 255 RIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 RID ++DS+ YL E NT PG T+ SL P +G+S+S L+ R+++L Sbjct: 298 RIDFLVDSNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 347 >UniRef50_C3WFS8 D-alanine-D-alanine ligase n=6 Tax=Fusobacterium RepID=C3WFS8_FUSMR Length = 288 Score = 326 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIAL 62 KIAV +GG S+EREVSL SGAA+L L+ G DAY VD E + V+ + +IA Sbjct: 2 KIAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTEKNLVSAFTENEYDLAYIAF 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GE+GT QG+L+++G PYTGSG M SA++MDK +K + G+ A Sbjct: 62 HGGYGENGTFQGLLDMLGKPYTGSGAMESAITMDKAYTKAVANSVGIKTAK--------- 112 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + + EI PV+VKPSR+GSSVG+ + +++ALR + LIE+ Sbjct: 113 ----TYNCVEEIKD--FPVVVKPSRDGSSVGIYFCNTQEEVREALRAL--EGRKPLIEEM 164 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E TV +L E L +RI P FYDYE+KY + + + PA ++ + + Sbjct: 165 IQGEELTVGVLNGEGLGVLRIIPKNKFYDYESKYAAGGSIHEYPAKIDKAAYDKAMENAV 224 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 K +G KG R D ML DG+ Y LE NT PGMT SL+P G +F LV ++ Sbjct: 225 KIHNVIGLKGISRSDFML-KDGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLVKIMV 283 Query: 303 EL 304 + Sbjct: 284 DT 285 >UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacterium RepID=DDL_CORJK Length = 373 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 111/366 (30%), Positives = 157/366 (42%), Gaps = 72/366 (19%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD--------PKEVDVTQLKSMG-- 54 +AVL GG S E VS S AV+ L + PV P D ++L++ G Sbjct: 13 VAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWVPGTTDTSRLRADGRD 72 Query: 55 ----------------------------------------------FQKVFIALHGRGGE 68 VF LHG GE Sbjct: 73 MPRVEDGGVHVQLTFGGAGTAGSAGSGAAGEMRYVTGPQAGEVFAQVDVVFPVLHGVNGE 132 Query: 69 DGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD 128 DGT+QG+L+L G+ Y G+GV+ASA MDK +K L + AG+PV + L + + Sbjct: 133 DGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGEELILFQPR------E 186 Query: 129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEF 188 E LGLPV VKP+R GSS+G+SKV + A+ LAF +D +V++E + G E Sbjct: 187 LTAEEKERLGLPVFVKPARGGSSIGISKVDSWEEFDAAIDLAFSNDNKVIVEAMIHGAEV 246 Query: 189 TVAILGEEILPSIRIQP---------SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 +L + P + FY ++AKY+ PA L A ++ Sbjct: 247 ECGVLQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAPLPAETIKEIRQ 306 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 L ++ + LGC G R+D +G L E NT PG T S+ P G+SF LV Sbjct: 307 LAIRTFNALGCDGIARVDFFATENG-PVLNEINTMPGFTPISMYPKMFAAEGVSFGDLVS 365 Query: 300 RILELA 305 ++ A Sbjct: 366 ALIARA 371 >UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizobium RepID=DDLA_RHILO Length = 357 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 104/352 (29%), Positives = 157/352 (44%), Gaps = 53/352 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS--------- 52 ++A+L GG SAE +VS S A VL + + P+ +L+ Sbjct: 4 KTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSEAGADGA 63 Query: 53 -------------------------------MGFQKVFIALHGRGGEDGTLQGMLELMGL 81 VF LHG GEDG++QG E+ + Sbjct: 64 GAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAEVADV 123 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 Y G G++ASA +MDK +K L + AGL VA V + + + ALGLP Sbjct: 124 AYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDVGSFQE-----IAGALGLPF 178 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----- 196 KP+R+GSS G+SKV + + A+ A ++D + LIE+++ G E ++L Sbjct: 179 FAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSLT 238 Query: 197 ILPSIRIQP--SGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 + P I P FY YEAKY + PA + A A + +A+ LGC+ Sbjct: 239 VSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEAM 298 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D L +DG + E NT PG T S+ A AG+ +S+++ ++E A Sbjct: 299 ARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHA 350 >UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HX62_9BACT Length = 323 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 164/308 (53%), Gaps = 11/308 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 ++AVL GG S E E+S SG AV LR+ G + + L F+A Sbjct: 11 IRRVAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSPDVAFLA 70 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVA-PWVALTRA 120 HG GGE+GTLQG LE M +PYTGSGV+ASA+ M K+RS+ L++ GL V + T Sbjct: 71 THGGGGENGTLQGFLETMKIPYTGSGVLASAIGMSKMRSRALFRERGLAVPLTYAHRTEE 130 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 F G + P +VKP GSS+G+ +V+ L DA+ A ++ VL+E Sbjct: 131 SFNPGYI--------SFDPPYMVKPEAAGSSIGVKRVLRREDLADAVSEAGRYSHWVLVE 182 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGT--FYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 + + G E AIL L +I I P FY Y +KY+ +++ PA L + + L Sbjct: 183 QLIPGREIQSAILSGRYLGAIEIIPDKAEPFYTYASKYVPGGSRHISPAPLTPDESSELS 242 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + ++A L +G R+D +L+ +G F +LE NT PG+T SL+P A G+SF+ L+ Sbjct: 243 RITIEACRVLDVRGACRLDTILNDEGVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLI 302 Query: 299 VRILELAD 306 + ++ A Sbjct: 303 IELIATAS 310 >UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsieae RepID=DDL_RICCK Length = 354 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 162/307 (52%), Gaps = 12/307 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 IA++ GG SAEREVSL S V L G +D +L+ + VF Sbjct: 55 KKHIALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEIKPDIVFNC 114 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG L G+L +M +PYT SGV++SAL+ DK+ S+ + + +A + + +++ Sbjct: 115 LHGTYGEDGCLSGLLNIMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSD 174 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 +I + P ++KP +GSS+G+ + E+ A F + ++V+IEK Sbjct: 175 N---------IKIEPMKRPYVIKPITQGSSIGIEVIFEEDDFNFA-NYDFPYGDQVIIEK 224 Query: 182 WLSGPEFTVAILGEEILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 ++ G E VA+L + L + I+ FYDYE KY ++ CPA + + L Sbjct: 225 YIKGRELQVAVLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTNLYDKLLIE 284 Query: 241 VLKAWTTLGCKGWGRIDVML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 K + T+ CKG R++ +L D + Y LE NT PGMT S+VP A AG++F+ L+ Sbjct: 285 SEKIYKTMNCKGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIE 344 Query: 300 RILELAD 306 I++ A Sbjct: 345 EIIKAAS 351 >UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4ECT1_9ACTN Length = 321 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 122/310 (39%), Positives = 163/310 (52%), Gaps = 14/310 (4%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-DAYPVDPKEVDV-TQLKSMGFQKVF 59 +AVL GG SAERE+SLNSG V+ L+E G +D D + + GF F Sbjct: 8 NMHVAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVELIDTAADDFMVTMATGGFDVAF 67 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IA+HG GGEDG +QG +E +G+PYT SGV+ASA DK SKLL+ AG+P+AP +AL Sbjct: 68 IAMHGAGGEDGAMQGAMETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLAL-- 125 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 E G + G VKP+ GSS G+S V + L A+ AF + ++VL+ Sbjct: 126 ---EVGDEVDIDHIVEVCGERCFVKPAVNGSSYGISLVHEPSELPAAIAKAFAYGDKVLV 182 Query: 180 EKWLSGPEFTVAILGE---EILPSIRIQPSG--TFYDYEAKYLSDETQYFCPAGLEASQE 234 EK + G E TV + GE LP + I+ FYD + KY+ + PA + Sbjct: 183 EKCIEGTEITVGVYGEDDVRALPIVEIRKPEDCEFYDLDVKYVDPTDIHRIPAQISPENY 242 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQA-GMS 293 A Q L A LGC G R D ++ DG +LE NT PGMT SL P R M+ Sbjct: 243 ARAQELACAAHKALGCLGISRSDFIVSEDG-PVILETNTIPGMTDTSLYPDEIRHTDDMT 301 Query: 294 FSQLVVRILE 303 F Q+ ++ Sbjct: 302 FPQVCDSLIR 311 >UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiaceae RepID=A8MKQ7_ALKOO Length = 349 Score = 323 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 99/344 (28%), Positives = 158/344 (45%), Gaps = 48/344 (13%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------------ 40 +AV+ GG S+E EVSL S +AV+ L D + Sbjct: 6 VAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGTLDKIKENTWF 65 Query: 41 ---------------DPK--EVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPY 83 D K E+ + VF LHGR GEDGTLQG+ E+ G+PY Sbjct: 66 LDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGLFEITGIPY 125 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 G V AS++ +DK + + Q AG V +A+ E D+ +G P+ V Sbjct: 126 VGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKE----DEINKFAENVGYPIYV 181 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL---PS 200 KPSREGSS+G++K + L + A + D +V++E+ + G E AILG + L Sbjct: 182 KPSREGSSIGITKAENHSDLMGGIEAALKLDGKVVLEENIEGFEVGCAILGNDDLIVGTV 241 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I+ F+D+ KY ++ PA ++ ++ + + LGC G R+D+ + Sbjct: 242 DEIEVPNGFFDFTEKYTLQNSKIHLPARIDQDLSERIKEIGKGIYKALGCSGLSRVDLFV 301 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 D + + E NT PG T+ S P AG+++ ++ ++++L Sbjct: 302 DKNHRIVFNEVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLIDL 345 >UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FYV0_9DELT Length = 360 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 113/342 (33%), Positives = 175/342 (51%), Gaps = 40/342 (11%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------PVD-----PKE 44 ++A++ GG S+E +VS+ S VLA + + P+D P E Sbjct: 4 QRLALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPGPTE 63 Query: 45 VDVTQLKSMGFQKV------------FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 + + G F LHG GEDGT+QG+ E+ +PY GSGV+AS+ Sbjct: 64 APLRAVLESGEPIADLGAFLRSCACTFPLLHGPYGEDGTIQGLFEVFDVPYVGSGVLASS 123 Query: 93 LSMDKLRSKLLWQGA--GLPVAPWVALTRA-EFEKGLSDKQLAEISALGLPVIVKPSREG 149 L MDK+ K A +PV P +++ E + + ++ A A G P+ VKP+ +G Sbjct: 124 LCMDKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAAAEAHGFPLFVKPANQG 183 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE-----EILPSIRIQ 204 SSVG+S+ +L AL LA ++D +V+IEK L E +A+ G+ + P I Sbjct: 184 SSVGVSRADDLASLDAALDLALRYDAQVVIEKGLDAREIELAVFGDGGPDTVVSPPGEII 243 Query: 205 -PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD 263 P G +Y YE KY+ D Y P L A+ A LQ L L+A+ C G R+D +++ D Sbjct: 244 LPKGEWYTYETKYVDDVASYAIPVELPAATTARLQELALRAFRATRCSGLARVDFLVERD 303 Query: 264 G-QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + +L E NT PG TS S+ P AG+S+++L+ ++++L Sbjct: 304 SLEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVDL 345 >UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira RepID=C0QV33_BRAHW Length = 328 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 102/311 (32%), Positives = 161/311 (51%), Gaps = 13/311 (4%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGL---REGGIDAYPVDPKEV--DVTQLKSMGFQ 56 KIAVL GG S+EREVSL SG V L E + +D K+ V +LK + Sbjct: 17 NKKIAVLHGGLSSEREVSLRSGQNVYKALTSFDEIKDNCILIDVKDSYELVKKLKENNIE 76 Query: 57 KVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA 116 + LHG GEDGT+QG+LE + + YTG ++ SA+ M+K+ +K +W+ + + A ++ Sbjct: 77 YCYNILHGTSGEDGTVQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFML 136 Query: 117 LTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 L + ++ P+I+KP +GSSVG+ + + + + + E Sbjct: 137 L--KDVKEINDSGIKGSALTFNFPLILKPISDGSSVGVHLIKTKTEFESVVSSI-KDSEN 193 Query: 177 VLIEKWLSGPEFTVAILGEE-----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEA 231 +E ++ G E TV ++ ++ + P + I YDYEAKY +T+ PA L Sbjct: 194 YFLEPYIKGKEITVGLVKQDDENIYVFPILGINSKNEIYDYEAKYTPGKTEMEMPAKLSK 253 Query: 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 E + KA+ LGC G RID ++ +D + YL+E NT GMT+ S +P A+ Sbjct: 254 EIENKVIETCKKAYKVLGCSGLSRIDAIVGNDNEVYLMEVNTQGGMTNTSDIPAMAKHIN 313 Query: 292 MSFSQLVVRIL 302 + F+ LV+ IL Sbjct: 314 LDFNDLVLYIL 324 >UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira RepID=DDL_LEPBJ Length = 351 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 175/344 (50%), Gaps = 45/344 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 KIAV GG+S E +S+ +G + L G P+ Sbjct: 3 KIAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVPLQYRISIPYEAV 62 Query: 41 ---DPKEVDVTQ---------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 D E + + + ++ VF+ LHG GEDG++QG L ++G+PYTGSGV Sbjct: 63 NSSDLFEEEFQKTNGVSKMDFISNLDADIVFLGLHGGKGEDGSIQGFLRVLGVPYTGSGV 122 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSRE 148 ASAL+MDK R+ ++ +G VAP+ + + + ++ + ++ +LG P +KP Sbjct: 123 AASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNS-PEETVIKLMSLGFPQFLKPVEG 181 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE--------ILPS 200 GSSV K+ + L L L F+ D +V+ + +L+G E + +L LP+ Sbjct: 182 GSSVSTYKITNQEQLSRQLALIFESDSKVMSQSFLAGTEVSCGVLERYRNGKLERIALPA 241 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I P G F+D+E+KY ++ PA + + +Q L + A T+LGC+G+ R D ++ Sbjct: 242 TEIVPGGEFFDFESKYKQGGSREITPARISKQEMTRVQELAIDAHTSLGCRGYSRSDFII 301 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 G+ ++LE NT PGMT SL+P A+ AG++ ++ ++E+ Sbjct: 302 VG-GEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIEI 344 >UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia RepID=DDL_WOLTR Length = 339 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 106/321 (33%), Positives = 160/321 (49%), Gaps = 26/321 (8%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M I +L GG S ER++SL SG AV L +A +D +LK + FI Sbjct: 15 MVLTITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFI 74 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GEDG +QG+LE++G+ YT SGVMASA++M+K SK +++ G+ ++R Sbjct: 75 ALHGPYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRG 134 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA---LQDALRLAFQHDEEV 177 + L + P ++KP EGSS+G+ + L++ + HD + Sbjct: 135 DI--------LKNNIKIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGI 186 Query: 178 -------------LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYF 224 +IE+++ G E A+L +E ++ I+P FYDY+AKY + ++ Sbjct: 187 EEEEPVWITRDLMIIEEYIPGIELHTAVLLDEAAGTMEIRPKNKFYDYKAKYTNGFAEHI 246 Query: 225 CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLV 283 PA + + LK LGCK R D + D +LE NT PG T SLV Sbjct: 247 FPAEIPDNIYEMTLEHALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLV 306 Query: 284 PMAARQA-GMSFSQLVVRILE 303 P A+ G+ F++LV I+E Sbjct: 307 PEIAKLTKGIDFNELVKIIIE 327 >UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirillum sp. Group II RepID=A3ERR6_9BACT Length = 303 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 116/299 (38%), Positives = 159/299 (53%), Gaps = 9/299 (3%) Query: 9 LGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGE 68 +GG S E VS SG AVL LR G +A PV+ L F+A HG GE Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60 Query: 69 DGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD 128 +G LQG LE++G+PYTGSGV+ SAL M K S+ L++ GL V VA+ E Sbjct: 61 NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIESGE------- 113 Query: 129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEF 188 + + LP +VKP GSS+G+++V L AL A +H +L+E +L G E Sbjct: 114 RLTPDKIPFPLPFMVKPESAGSSIGVTRVDHFPDLPQALLEAEKHSSRILVEPFLPGREV 173 Query: 189 TVAILGEEILPSIRIQPS--GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWT 246 AIL L +I I P FY Y +KY ++++ PA L + + L+ L+A+ Sbjct: 174 QSAILDGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVASRLEEATLRAFG 233 Query: 247 TLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L +G R+D ++ DG+ +LE NT PG+T SLVP AR G+SF LV IL A Sbjct: 234 LLELRGVARMDTLVLPDGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292 >UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacillales RepID=DDL_LACLM Length = 349 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 101/338 (29%), Positives = 162/338 (47%), Gaps = 37/338 (10%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------------PVDP 42 + + +L GG SAEREVS+ S +V+ + P + Sbjct: 3 KETLILLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDRPAEE 62 Query: 43 KEVDVTQLKSMGFQ-----------KVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMAS 91 +++ L + VF LHG GEDG++QG LE++ L Y G ++++ Sbjct: 63 EKLLTNDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSA 122 Query: 92 ALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSS 151 + +MDKL +K +++ G+P P+VA E + ++ + + L PV VKP+ GSS Sbjct: 123 SSTMDKLLAKHVFEAVGVPQVPYVAAFADENQVEIAQEVV---EKLDFPVFVKPANMGSS 179 Query: 152 VGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSG 207 VG+SKV LQ AL A+++D V+IE+ + E A+LG + Sbjct: 180 VGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDV 239 Query: 208 TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFY 267 FYDY +KY+ ++ Q PA + A +Q KA+ + G R D + DG Y Sbjct: 240 GFYDYNSKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVTKDGNVY 299 Query: 268 LLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L E N PG T S+ P+ G+S+S L+ ++++LA Sbjct: 300 LNEVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMF6_9DELT Length = 300 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 110/305 (36%), Positives = 160/305 (52%), Gaps = 16/305 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD--PKEVDVTQLKSMGFQKVFIA 61 ++ ++ GG S ER+VSLN A + L+ G + +D P ++ K+ I Sbjct: 2 RVLLIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVN-KAREADAAIIN 60 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG++QG+LE +GLPY GSGV S L+++K SK + GL Sbjct: 61 LHGAPGEDGSIQGVLEDVGLPYQGSGVRGSFLALNKALSKQFYANHGLRTPKGGLYFPQ- 119 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + + PVI KP++ GSS+ M + + L E+L+E+ Sbjct: 120 ----------GRLHHVPPPVICKPNQGGSSLDMQIFYNQEEMYSFLNQVDSE-HEILVEE 168 Query: 182 WLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 ++G E + A+L E LP I IQP G F+DY +KY D CPA + ++Q + Sbjct: 169 LINGHEVSCAVLDNEPLPPILIQPVKGDFFDYNSKYDPDGAVEICPAPISQEASRSIQEM 228 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L+A LG + + R D MLD Y+LE NT PGMT SLVP AA+QAG+ F++L+ R Sbjct: 229 SLQAHRILGLRHYSRSDFMLDQQDNIYILETNTLPGMTRTSLVPKAAQQAGIGFTELIAR 288 Query: 301 ILELA 305 +L LA Sbjct: 289 LLSLA 293 >UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=DDL_COPPD Length = 304 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 160/307 (52%), Gaps = 10/307 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIAL 62 I VL GGTS ERE+SL SG + A LR G +D + V QL + VF AL Sbjct: 2 NIVVLFGGTSPEREISLKSGENIAATLRARGHQVETLDTAVPNFVEQLMQLKPDCVFPAL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDG +QG+L ++ +PY GS V AS ++MDK +KL+ +G+P ++ + Sbjct: 62 HGADGEDGKIQGLLSILHIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDPHL 121 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 D + LG P IVKP GS++G+S V + + + AL AF+ + +L+E++ Sbjct: 122 VPDYWDVE----RKLGSPFIVKPCDVGSTIGLSLVRSASEYEVALEEAFRFSDRLLLEEF 177 Query: 183 LSGPEFTVAI--LGEE--ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 + G E TV + LG + +LP I + +DY+ KY ++ + L Sbjct: 178 IDGFEVTVGLFRLGGDFLVLPPIYVVKPDRIFDYDTKYKPGGAKHVYDLPISVEARERLT 237 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + + +G G R+D ++ D YLLE N+ PGMT+ SLVP R AG F + + Sbjct: 238 SYSKRICKIVGIGGVARLDYIV-KDETPYLLEINSIPGMTAESLVPDEVRHAGRDFGEFL 296 Query: 299 VRILELA 305 +++ A Sbjct: 297 EDLIKDA 303 >UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWG2_9CLOT Length = 342 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 105/332 (31%), Positives = 154/332 (46%), Gaps = 47/332 (14%) Query: 21 NSGAAVLAGLREGGIDAYPVDPKEVDVTQL------------------------------ 50 S VL + + + PV K+ L Sbjct: 1 MSATTVLRAIDKSRYEVTPVGIKKDGSWWLYPGDIGLILDGRWESCPDNLPAFLVPDASV 60 Query: 51 ------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKL 98 V ALHG+ GEDGT+QG+L+L G+P+ G + +SA MDK+ Sbjct: 61 GGLLIRDSDHSDTVKKIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDKV 120 Query: 99 RSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG-LPVIVKPSREGSSVGMSKV 157 + ++ + AG+P A + L EF+ + L LG PV VKP+ GSSVG+SK Sbjct: 121 ITNVMLEQAGIPQARFTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVGVSKA 180 Query: 158 VAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYE 213 L+ A+ A + D ++LIE+ + G E A+LG E I PS FYDYE Sbjct: 181 ENREELRAAIAKAAKEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEIAPSNEFYDYE 240 Query: 214 AKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANT 273 AKYLS + + PA LE+ +++ KA+ LGC G R+D + + + L E NT Sbjct: 241 AKYLSGTSGLYIPAHLESGVIETIRSTAQKAYQVLGCSGLARVDFFVRNGSEVLLNELNT 300 Query: 274 SPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 PG TS S+ P G+S +L+ R+++LA Sbjct: 301 LPGFTSISMYPKLMEHEGLSNQELIHRLIQLA 332 >UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root RepID=B0NI26_EUBSP Length = 356 Score = 319 bits (818), Expect = 8e-86, Method: Composition-based stats. Identities = 115/352 (32%), Positives = 169/352 (48%), Gaps = 58/352 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY--------PVDPKEV---------- 45 KI VL GG S ER+VSL SGA + LRE G AY P DP ++ Sbjct: 2 KIIVLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGGG 61 Query: 46 ------------DVTQLKSMGFQ------------------KVFIALHGRGGEDGTLQGM 75 D+ L++ F+ LHG GE+G LQ Sbjct: 62 LEIAEGIKTTTPDLEALRASRPDQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQAT 121 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 +++G+ YTG ALSMDKL +K +++ +G+P +L R + L E Sbjct: 122 FDILGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNRNTKDTPL------EKL 175 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF--QHDEEVLIEKWLSGPEFTVAIL 193 LP+++KP GSS+G+ V E ++A+R +F H++EV+IE ++ G E+ +I+ Sbjct: 176 GYYLPLVIKPCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYACSII 235 Query: 194 GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPA-GLEASQEANLQALVLKAWTTLGCKG 252 + LP I I P ++YE KY Q CP L+ +A +Q KA+ L Sbjct: 236 AGKALPLIEIIPKDGIFNYENKYQDGGAQELCPPVSLDDKTQAKIQRAGEKAFRVLHMDV 295 Query: 253 WGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 + R D ++D DG+FY LE N PGMT SL+P +AR G+ + L I+E Sbjct: 296 YARADFIVDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIE 347 >UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacteriales RepID=C7PEF5_CHIPD Length = 329 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 153/329 (46%), Gaps = 31/329 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------------D 41 M IA++ GG S E +S+ S A + L + Y + D Sbjct: 1 MKKNIALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDGWNYTGSDGQLIAVD 60 Query: 42 PKEVDVT-QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 + +T + F VFI +HG GEDG LQG E++G+P+T G++ SAL+ +K Sbjct: 61 RNDFTLTINGNKVIFDAVFIGIHGTPGEDGRLQGYFEMLGIPFTSCGMVTSALTFNKSYC 120 Query: 101 KLLWQGAG-LPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA 159 + G + V+ V + + + A + L LPV VKP+ GSS+GMSKV Sbjct: 121 NKVVASLGVVNVSKSVHIFKDQPFD-----IQAILQELKLPVFVKPAEGGSSIGMSKVNT 175 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAK 215 L A+ AF D ++LIE+++ G E T + +LP I S F+DYEAK Sbjct: 176 AEELAPAIEKAFNEDVQILIEEFVKGREITCGLYRSNGAFTVLPVTEIISSKEFFDYEAK 235 Query: 216 YLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTS 274 Y ++ PA +Q K + L C+G R+D + + + + LE NT Sbjct: 236 YTPGVSREVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVRMDFIWEEASNRLFFLEVNTM 295 Query: 275 PGMTSHSLVPMAARQAGMSFSQLVVRILE 303 PG + +S+VP R AG + + ++E Sbjct: 296 PGQSENSIVPQQVRAAGKTLQEFYGTLIE 324 >UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacillus RepID=DDL_LACGA Length = 361 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 173/347 (49%), Gaps = 43/347 (12%) Query: 1 MTDKI--AVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------ 40 MTDKI ++ GG S+E EVS+ S + + D YP+ Sbjct: 1 MTDKIKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVL 60 Query: 41 --------DPKEV----DVTQLKSM-GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 +P +V ++ +LK F +HG GEDG LQG+ ++ P+ G Sbjct: 61 DNPKMEVANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDD 120 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE--ISALGLPVIVKP 145 V+A+A++MDK +K+L Q AG+PVA W+A+ R E+ ++K E S LG + VKP Sbjct: 121 VLAAAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKP 180 Query: 146 SREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR--- 202 S +GSSVG+S V E + AL AF++D++VL+E+ + G E A+LG + P + Sbjct: 181 SNQGSSVGVSHVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVLGNDK-PIVAGVG 239 Query: 203 --IQPSGTFYDYEAKYLSDET-QYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 I +FY YE KY + T PA L ++ LK + C G RID M Sbjct: 240 QIINAKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSM 299 Query: 260 L-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L D + L E N PG T+ S+ P + G+ ++ L+ ++++ A Sbjct: 300 LRTEDKEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 346 >UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT57_9BACT Length = 331 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 163/328 (49%), Gaps = 30/328 (9%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD------------- 46 M IA++ GG S+ERE++L S A + + L D +D D Sbjct: 1 MKRLNIALMAGGDSSEREIALQSAAQIASALDPAKYDITLIDLHGRDWHYTSPDGRQWQV 60 Query: 47 -------VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 + F I +HG GE+G LQG L++MG+PY+ + +S ++ DK+ Sbjct: 61 DKNDFSITIDGEHKAFDYALILIHGTPGENGRLQGYLDMMGIPYSSCSMTSSVVTFDKIT 120 Query: 100 SKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA 159 +K G+P+A R + + K++ + LGLPV VKP+ GSS G++KV + Sbjct: 121 TKRTVAEFGIPLARGFFFGR---DSRIDPKEI--VRTLGLPVFVKPNASGSSFGVTKVKS 175 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAK 215 E + A+ AF +E+LIE+ + G E +L E I P I F+DYEAK Sbjct: 176 EADILPAVAEAFTESDEILIEECIQGREMGCGMLIAKGREYIFPITEIVSKKEFFDYEAK 235 Query: 216 YLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSP 275 Y + + PA + +A L L A+ C+G R+D ++ +G+ YL+E N+ P Sbjct: 236 YTAGCSDEITPADIAPEIKAELNRLTALAYKACRCRGVVRVDFIVTPEGKPYLIEINSIP 295 Query: 276 GMTSHSLVPMAARQAGMSFSQLVVRILE 303 GM+ S+VP R+AGM+ +L I+E Sbjct: 296 GMSGGSIVPKQVREAGMTLGELYDLIIE 323 >UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS09_SYNAS Length = 355 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 111/337 (32%), Positives = 170/337 (50%), Gaps = 33/337 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------------------- 40 ++ +++ G S+E+EVSL SG + + + P+ Sbjct: 8 KLRVGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCT 67 Query: 41 -DPKEVDVTQLKSMGF-------QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 D +E + + + VF+ALHG+ GEDG +QG+LEL+ +PYTGSGV+ASA Sbjct: 68 RDVEEDLAEEAVRVPYEELKTRVDLVFLALHGKYGEDGCMQGLLELLKIPYTGSGVLASA 127 Query: 93 LSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA-LGLPVIVKPSREGSS 151 L MDKL S+ + + G+ V V + R ++ + I +G P +VKPSREG S Sbjct: 128 LGMDKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQEIGFPCVVKPSREGCS 187 Query: 152 VGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGT 208 G+ KV++ L DAL AF D L+E+++ G E T ILG L + Sbjct: 188 TGVKKVMSRAGLSDALNGAFLWDCTALVEEFIDGMEVTCGILGGNPPTALTPSETIATSD 247 Query: 209 FYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYL 268 E K+L + + PA L +Q + +KA+ L KG+ RID+ + S G+ + Sbjct: 248 VLSLEDKFLYGQGENKTPARLPGETLMKIQEVAVKAFEALDLKGYARIDMFVTSAGRVLV 307 Query: 269 LEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 LE NT PGMT +++ A +G++ + LV RILE A Sbjct: 308 LEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAA 344 >UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiaceae RepID=DDL_CHLP8 Length = 364 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 106/347 (30%), Positives = 154/347 (44%), Gaps = 48/347 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE---------------VD 46 +A+ GG S E +S+ S AV + + D P+ +D Sbjct: 3 KQTVALFFGGKSVEHIISIISARAVASHIDHSRYDITPLYIDRGGHWHGGACAKRILALD 62 Query: 47 VTQLKSMG-----------------------------FQKVFIALHGRGGEDGTLQGMLE 77 V L G F+ LHG GEDG +QG L+ Sbjct: 63 VAVLLRNGGQDEVFERLDEITSFDEGKRFDLTAFFDSIDVAFLTLHGSYGEDGKIQGCLD 122 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 +PY G G+ +SALSMDK +KL AG+ VA ++++T A++ A Sbjct: 123 TFDIPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFMSVTSADYAADPQAICNAVTERF 182 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE- 196 PV VKP+ GSSVG+SKV L+ AL A D +VL+E+ ++G E VA+LG + Sbjct: 183 AFPVFVKPANLGSSVGISKVHNAAELRPALDKACALDAKVLVEETITGREVEVAVLGNDD 242 Query: 197 --ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 I P FYD+E KY+ + + PA L A ++ L + LGC G Sbjct: 243 PIASVPGEIIPGSDFYDFEDKYVKSDAKLVIPADLPGEVSAAVRNAALTVFKALGCSGMA 302 Query: 255 RIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 R+D ++ + L E NT PG T S+ PM +G+ F +L+ R Sbjct: 303 RVDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSASGVEFDELISR 349 >UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDP6_ELUMP Length = 353 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 112/337 (33%), Positives = 166/337 (49%), Gaps = 40/337 (11%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-----------------PVDPKEVDV 47 IAV+ GG S E EVS++S A V G+ + P P +++V Sbjct: 6 IAVVYGGKSVEHEVSVHSAADVC-GILSKKYNVINIFISKEGLWFAQEKCGPAQPSDINV 64 Query: 48 TQLKSMGF------------QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSM 95 T + S +F LHG GEDG +QG+ ELM PY G GVMASA+ M Sbjct: 65 TPVFSNDCMFQTADGGTISADVLFPVLHGTKGEDGCIQGLFELMETPYVGCGVMASAIGM 124 Query: 96 DKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 155 DK SK+L AG+P P++ + + ++ A+ + LG PV VKP GSS+G++ Sbjct: 125 DKEVSKVLAAYAGVPTLPYITFKKGD---SVTKDFKAKTAKLGYPVFVKPVNLGSSIGIT 181 Query: 156 KVVAENALQDALRLAFQHDEEVLIEKWLSGP-EFTVAILGE----EILPSIRIQPSG-TF 209 KV E L+ A+ A + D ++LIEK + P E A+ GE E + P+G F Sbjct: 182 KVKEEAFLEKAIEFALKFDNDILIEKGVQSPKEIFCAVCGEGNNTESSSCGELIPNGHEF 241 Query: 210 YDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYL 268 +DY +KY+ + PA + ++ +Q + G+ R+D +L DGQ Y Sbjct: 242 FDYHSKYIDPNGCTVKVPASVSEEEDKLMQKYSRMIFKVFKACGFARVDFLLGKDGQIYF 301 Query: 269 LEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 E NT PGM++ SL P R AG + ++ ++ LA Sbjct: 302 SEINTLPGMSNASLFPQLWRAAGKKYEDVLDTLINLA 338 >UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W6_9FIRM Length = 358 Score = 315 bits (809), Expect = 9e-85, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 162/347 (46%), Gaps = 46/347 (13%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV---------------DPKE 44 M+ ++ V+ GG S+E VSL+S + L + + + D E Sbjct: 8 MSKLRLGVVFGGQSSEYSVSLHSVTSFLRQIHADNYEMTLIGINKNGHFYLYNGDVDSIE 67 Query: 45 VDVTQLKS---------------------MGFQKVFIALHGRGGEDGTLQGMLELMGLPY 83 D + + + VF LHG+ GEDG +QG+LELM + Y Sbjct: 68 HDTWENEETCVSCAWVNGGIMPLDGSNKVIELDCVFPVLHGKNGEDGLIQGLLELMNIHY 127 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 G VM+SA+SMDK +L + A +P A ++ L Q + LP I+ Sbjct: 128 VGCDVMSSAMSMDKEIMHILCKEAKIPCADYICLYANRENPTFEQIQ----EKIELPWII 183 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDE--EVLIEKWLSGPEFTVAILGEEILPSI 201 KP GSS G+ V + + A + AF +D ++L+EK + G E A++G E + + Sbjct: 184 KPCNAGSSYGVHFVNNKEEFESACKDAFFYDGRGKILVEKVIKGFEIGCAVMGNEEIFTG 243 Query: 202 ---RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I+ +G F+D+E KY +CPA ++ Q L K + + C G R+D+ Sbjct: 244 SIDEIEITGGFFDFEGKYEMKGAAIYCPARIDEKTFKEAQELARKTYIAMNCCGMARVDM 303 Query: 259 MLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + D + L E NT PG+T+ S P + AG+ F+ L+ +++ELA Sbjct: 304 FVTEDKEVILNELNTIPGLTATSRYPSMMKVAGIEFADLIDKLIELA 350 >UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriaceae RepID=C7NBV7_LEPBD Length = 308 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 173/307 (56%), Gaps = 9/307 (2%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--DPKEVDVTQLKSMGFQKVF 59 ++ V+ GG S EREVSL +G+ ++A L + + + D ++ ++K + V+ Sbjct: 3 KLRVGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEKEVFEKVKELNLDFVY 62 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG GEDG +Q +L+ +G+ Y+G GVM+SA+ MDK SK + G G+ +A W ++ Sbjct: 63 IALHGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRV 122 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 E + K LG V+VKP+ GSS+G+S V + L+ L L F D+E LI Sbjct: 123 GETVDFETIK-----KELGNRVVVKPNSGGSSIGVSFVENQEELEKGLELVFGMDKEALI 177 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 E+ L G E +V ++ ++ P+IRI+ +G ++DYE+KY + +A + Sbjct: 178 EEVLHGVEISVPVIDGKVFPTIRIEALAGDYFDYESKYAKGGANEYV-FEFPEEVQAEIN 236 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 ++ L C+G+ RID M+ ++ Y +E NTSPGMTS SL+P + G ++Q + Sbjct: 237 KFAKDSYYGLKCEGFARIDFMVVNEETPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTL 296 Query: 299 VRILELA 305 ++E + Sbjct: 297 DLLIESS 303 >UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS02_SYNAS Length = 352 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 109/336 (32%), Positives = 166/336 (49%), Gaps = 34/336 (10%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------D 41 K+ ++LGG S+EREVSLNSG V L + PV D Sbjct: 6 KVGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQNTTRD 65 Query: 42 PKEVDVTQLKSMGF-------QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALS 94 E + + + + FI+LHG+ G+DG +QG+LEL+ +PYTG GVMASAL Sbjct: 66 ITERLKGEARRIAYEDLKKEIDFAFISLHGKYGDDGCIQGLLELLRIPYTGPGVMASALG 125 Query: 95 MDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGM 154 MDK + + + AG+ V + + E+ + + G P KP REGSSVG+ Sbjct: 126 MDKHLQQKILRAAGVAVPESLLVREEEWRQDSQIVKDRVKEFPGYPCFTKPIREGSSVGV 185 Query: 155 SKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFY 210 + V E L+ + A + D VL+E++L G EF+ +L EE L I P F+ Sbjct: 186 TVVRDEADLERGMEDALKWDRAVLVEEYLEGREFSCIVLEEEGQFHPLELTEIHPQSEFF 245 Query: 211 DYEAKYLSDETQYFCPAG-LEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLL 269 Y+ KY+ + F P + ++A V++A+ LG + +GRID + +DG+ + Sbjct: 246 TYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFILNDGRILIT 305 Query: 270 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + N+S GM S A AGM S ++ ++E A Sbjct: 306 DPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENA 341 >UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein vanA n=122 Tax=Bacteria RepID=VANA_ENTFC Length = 343 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 160/349 (45%), Gaps = 53/349 (15%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL--------- 50 M K+A+L GG S E +VS+ S + A + + + + + V ++ Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 51 --------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 + F ALHG+ GEDG++QG+ EL G+P+ Sbjct: 61 NDNCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFV 120 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 G + +SA+ MDK + ++ + AG+ + + + + + PV VK Sbjct: 121 GCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDD---------RPVAATFTYPVFVK 171 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI--- 201 P+R GSS G+ KV + + L A+ A Q+D ++LIE+ +SG E A+LG + Sbjct: 172 PARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVVGEV 231 Query: 202 -RIQPSGTFY----DYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 +I+ + + E + S+ PA L A + +Q K + LGC+G R+ Sbjct: 232 DQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARV 291 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D+ L +G+ L E NT PG TS+S P AG++ +L+ R++ LA Sbjct: 292 DMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 340 >UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia RepID=DDL_BORHD Length = 365 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 162/346 (46%), Gaps = 41/346 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREG-GIDAYP--VD------------PKEV 45 M + ++ GG S E E+SL S + + L + + YP +D P Sbjct: 2 MKKNLMLIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDSVPDAP 61 Query: 46 DVTQ------------------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 ++ + + + VF +HGR GEDG +QG L++M +P G+G Sbjct: 62 ELIKRDSSAIISLIPGCGIFVNDEDLEIDVVFPIVHGRTGEDGAIQGFLKMMDIPCVGAG 121 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 ++ SA+S++K KLL + +P+ P++ + ++ + +L PVIVKP+ Sbjct: 122 ILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKQSLNYPVIVKPAM 181 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL----PSIRI 203 GSS+G+S + ++ + AF++D V++EK++ E +++G E + P + Sbjct: 182 LGSSIGISIAYNDTQIEKCIEEAFEYDLTVVVEKFMKVREIECSVIGNEQIKIFTPGEIV 241 Query: 204 QPSGTFYDYEAKYLS---DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 FYDY+AKY + + + PA L+ +++ + L +G RID ++ Sbjct: 242 VQDFVFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKCLELRGMARIDFLI 301 Query: 261 DSDGQ-FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + D Y+ E NT PG T S+ G+ + LV ++ LA Sbjct: 302 EKDTNLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLVDNLVSLA 347 >UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaproteobacteria RepID=DDLA_BRUME Length = 353 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 163/346 (47%), Gaps = 50/346 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL----------- 50 +I VL GG SAE +VS+ S V+ L +A PV L Sbjct: 5 KMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKP 64 Query: 51 --------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 ++ +F LHG GEDG +QG+ ++ +P Sbjct: 65 SSGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLA 124 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 G G+ SA ++DK +K L AGL A V +TR E + +Q ALGLP+ +K Sbjct: 125 GCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQ-----ALGLPIFIK 179 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-----ILP 199 P+R+GSSVG+ KVV E Q A+ F +D+++L E+++ E +L +E + Sbjct: 180 PARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSR 239 Query: 200 SIRIQP--SGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 + I P S FY Y+AKY+ D T+ PA L E ++A+ KA+ LGC R+ Sbjct: 240 AGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARV 299 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 D + +D + L E NT PG T S+ +G+S+ +++ R++ Sbjct: 300 DFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 345 >UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZZ06_9SPHI Length = 394 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 100/364 (27%), Positives = 153/364 (42%), Gaps = 63/364 (17%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE----------VDVTQL 50 M I V GG S E E+S+ S + + D P+ + +DV Sbjct: 1 MKANIGVFFGGRSVEHEISVISALQAIQAIDHSRYDVTPIYISKAGQWYTGEQLLDVENY 60 Query: 51 KSM------------------------------------GFQKVFIALHGRGGEDGTLQG 74 + + F LHG GEDG LQG Sbjct: 61 RKLDELLNNSTKIIMSPNFEDYSFVESGAKGLFKKPLKGKIDIAFPVLHGSFGEDGALQG 120 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 + ELMG+PY G V++SA+ MDK+ K++ + +GLPV +V +++ + Sbjct: 121 LFELMGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVKYVWFYSKNWQQDTTSHIGKVE 180 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAIL 193 LG PVIVKP+ GSSVG+ K L++A+ A ++L+E+ + E ++L Sbjct: 181 QTLGYPVIVKPANLGSSVGIKKAANREELEEAIDYAAGFSHKLLVEQTIVDLKEINCSVL 240 Query: 194 GE--EILPSIRIQP--SGTFYDYEAKYLS-------DETQYFCPAGLEASQEANLQALVL 242 G S +P SG Y+ KY++ T+ PA + +Q L + Sbjct: 241 GNYENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMSGTKRKLPAEIPTEMSDKIQQLAV 300 Query: 243 KAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 + LGC G RID +LD + + Y+ E NT PG SL +F QLV + Sbjct: 301 DTFQVLGCAGVSRIDFLLDQATNEVYVNEINTIPG----SLSFYLWEATDKNFGQLVNDL 356 Query: 302 LELA 305 ++ A Sbjct: 357 IDTA 360 >UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9PTP4_9BACT Length = 392 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 103/331 (31%), Positives = 167/331 (50%), Gaps = 32/331 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-------------- 46 + IA++ GG S+E EVSL S + + + + Y VD + ++ Sbjct: 63 LKRNIAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERAIID 122 Query: 47 ------VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 V + + + F +I +HG GE+G +QG EL+ +PY+ SGV+ AL+ DK Sbjct: 123 KNDFSFVHEGEQVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVL 182 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 +G G+ VA + + R E E G+ ++ + + LG+P VKP+ +GSS G+SKV Sbjct: 183 NNYLRGFGVNVANSILVRRGE-EFGIDERAVE--AQLGMPCFVKPAADGSSFGVSKVKNI 239 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVA---ILGE-EILPSIRIQPSGTFYDYEAKY 216 + L ALR A D+ +IE +L G E +V + GE ++LP+ + F+DY+AKY Sbjct: 240 DQLAPALRKALMEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEVVSHNEFFDYDAKY 299 Query: 217 LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD----GQFYLLEAN 272 + + + PA + + + + L C G RID +L + + L+E N Sbjct: 300 -NGQVEEITPARIADETARRVAEETARIYEILNCNGIIRIDYILTKEPDGTDKINLIEVN 358 Query: 273 TSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 T+PGMT S +P R AGM ++ I+E Sbjct: 359 TTPGMTPTSFIPQQVRAAGMEMKDVLSEIVE 389 >UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=DDL_BIFA0 Length = 378 Score = 310 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 106/374 (28%), Positives = 164/374 (43%), Gaps = 70/374 (18%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------DPKEVDVT 48 ++AVL GG + E +S S A+ + L +A P+ DP ++ Sbjct: 3 KTRVAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLA 62 Query: 49 Q---------------------------------LKSMG-FQKVFIALHGRGGEDGTLQG 74 + L S+G V ALHG GEDGT+QG Sbjct: 63 EGLPEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQG 122 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE- 133 + E+MG+PY G GV+ASA MDK +K+L + AG+PVAP + L ++ E Sbjct: 123 LFEMMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEE 182 Query: 134 ------ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF---QHDEEVLIEKWLS 184 + L P+ VKPSR GSS G++KV F +HD VL+E+ + Sbjct: 183 FLRQVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGID 242 Query: 185 GPEFTVAI------------LGEEILPSIRIQPSGTFYDYEAKYLSDETQYF-CPAGLEA 231 E A+ L E++ R + FYD+++KY+ + + PA + Sbjct: 243 AREIECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGD 302 Query: 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 A ++ ++A+ + G R+D + +DG + E NT PG TS S+ P A G Sbjct: 303 DLIARVRETAVRAFDAVDGMGLSRVDTFVTADGDVLVNEINTLPGCTSISMFPQAWEAMG 362 Query: 292 MSFSQLVVRILELA 305 + F +V ++E A Sbjct: 363 IPFRTVVTDLIEGA 376 >UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia magna RepID=DDL_FINM2 Length = 350 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 162/343 (47%), Gaps = 45/343 (13%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------------- 40 M I VL GG S E EVS+ S ++ L + + + Sbjct: 1 MQKNIYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKS 60 Query: 41 ----------DPKEVDVTQLKSMGFQ--KVFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 E ++ + + +F A+HG GEDGT+QG ++++ LP+ G V Sbjct: 61 DEELILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNV 120 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI-SALGLPVIVKPSR 147 + SAL MDK + +++ +P A +V L + + D L EI V VKP Sbjct: 121 LGSALCMDKGYTNDIFELNKIPQAKYVVLCKND------DYNLKEIFEKTSKAVYVKPCN 174 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRI 203 GSSVG+ + E L+ A++ AFQ+D +L+E+ + GPE +A++G + P + Sbjct: 175 AGSSVGVMRAETEEELEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQ 234 Query: 204 QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD 263 F+DY+AKY +T+ P ++ E + L K + + G+ R+D+ + D Sbjct: 235 IHDVEFFDYDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV-KD 293 Query: 264 GQFYLLEANTSPGMTSHSLVPMAARQAG-MSFSQLVVRILELA 305 + ++ E NT PG+T HS+ P+ + MS S++ ++ LA Sbjct: 294 NELWVNEINTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336 >UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira biflexa serovar Patoc RepID=DDL_LEPBA Length = 349 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 111/352 (31%), Positives = 170/352 (48%), Gaps = 52/352 (14%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------- 40 M+ KIA+L GG S E +S+ S A + A + D PV Sbjct: 1 MSKIKIALLFGGISGEHIISVRSSAFIFATIDREKYDVCPVYINPNGKFWIPTVSEPIYP 60 Query: 41 DPK-------------------EVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 DP + + MGF F+ LHG GEDG +QG L+ +G+ Sbjct: 61 DPSGKTEIEFLQEFNKANAIVSPSEPADISQMGFLSAFLGLHGGAGEDGRIQGFLDTLGI 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 P+TGSGV+AS+L+MDK R+ +L++ G+PVAP++ L + + + + L + PV Sbjct: 121 PHTGSGVLASSLAMDKYRANILFEAMGIPVAPFLELEKGKTDPRKTLLNL----SFSYPV 176 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----- 196 +KP+ GSSV + F D+ VL++K +SG E ++ +L + Sbjct: 177 FIKPTLGGSSVNTGMAKTAEEAMTLVDKIFVTDDRVLVQKLVSGTEVSIGVLEKPEGKKR 236 Query: 197 ---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 L I+P F+D+EAKY ++ PA + LQ L+ LGCKG+ Sbjct: 237 NPFPLVPTEIRPKSEFFDFEAKYTKGASEEITPAPVGDEVTKTLQEYTLRCHEILGCKGY 296 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R D ++ SDG Y+LE NT PGMT SL+P A+ G++ + +LE++ Sbjct: 297 SRTDFII-SDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWLLEIS 347 >UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJ24_FIBSS Length = 344 Score = 309 bits (793), Expect = 7e-83, Method: Composition-based stats. Identities = 103/337 (30%), Positives = 170/337 (50%), Gaps = 41/337 (12%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------DVTQLKSMGF 55 ++ VL+GG S E +VS+ SG V+ + + +PV + +++ + F Sbjct: 5 RVLVLMGGPSTEHDVSVVSGTGVVRAMDPEKYNIHPVLIDKDGTWHWSSRELSPYQKANF 64 Query: 56 ---------------------------QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 F+ALHG+ GEDG +Q MLE +PYTG G+ Sbjct: 65 SENYFHSLEGTAANKKKSPALSELPSADIAFLALHGKWGEDGHIQAMLENWNIPYTGCGL 124 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSRE 148 +ASAL+MDK++SK +++ G+P P+ + + +F D ++ LG P+++K Sbjct: 125 LASALAMDKIKSKEIYRANGIPTPPYRVIWKHDF---TGDTLVSVADELGYPLVIKDPLG 181 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVA-ILGEEILPSIRIQ-PS 206 GSS+G+ + + F+ +L EK+++G E + I GE+ LP ++ + Sbjct: 182 GSSIGIGIAKNLDEAGKIAQDLFKDSNRLLCEKFIAGGEASCGYIEGEKPLPPTEMRMTT 241 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 ++D+EAKY + E Q PA A +Q LV A LG G+ R DV + DG+ Sbjct: 242 REYFDFEAKY-NGECQEVTPAEFAPELTARIQELVKNAHYALGGAGYSRTDVRITKDGEL 300 Query: 267 YLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 + +E NT PGMT SL+P A G+++SQL+ I++ Sbjct: 301 FAIETNTLPGMTPTSLLPQQAACVGITYSQLIDLIID 337 >UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaerobacteraceae RepID=DDL_THETN Length = 389 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 100/362 (27%), Positives = 161/362 (44%), Gaps = 64/362 (17%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV----------DVTQLKSM 53 K+AV+ GG S E EVS+ +G V+ + + + PV D++ K + Sbjct: 3 KVAVMFGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKGLLDISNYKDI 62 Query: 54 --------------------------------------GFQKVFIALHGRGGEDGTLQGM 75 +F A HG GEDGT+QG+ Sbjct: 63 PSLLKKCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQGL 122 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 +L +PY GSGV+ SA MDK+ K +++ LP+ ++ R E+EK S Sbjct: 123 FQLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIES 182 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGP-EFTVAILG 194 L P+ VKP+ GSS+G+SK + L DA+ +A +D ++++E+ + P E +++G Sbjct: 183 KLKYPMFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDRKIIVEEAVKDPMEVNCSVMG 242 Query: 195 EEILPSIRI----QPSGTFYDYEAKYL------SDETQYFCPAGLEASQEANLQALVLKA 244 + I + P F Y+ KY+ T PA + + +Q L K Sbjct: 243 IDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKKV 302 Query: 245 WTTLGCKGWGRIDVMLDSDG-QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 + L C G RID +L+ + + Y+ E NT PG S + G+SF +L+ R++E Sbjct: 303 FQILDCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLIE 358 Query: 304 LA 305 A Sbjct: 359 YA 360 >UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLF9_9FIRM Length = 357 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 97/341 (28%), Positives = 166/341 (48%), Gaps = 38/341 (11%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE--------------VDVT 48 + +L GG S E E+S+ + +V+ L +P+ + + Sbjct: 2 KNLYLLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTKNIENEK 61 Query: 49 QLKSMGF-------------QKV------FIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 +L GF V F A+HG EDGT+QG ++M L Y G+ V+ Sbjct: 62 ELVVEGFGNVADSISNFFAKDFVNENAIFFPAMHGTFSEDGTIQGFFDIMDLTYVGNNVL 121 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 +SA+ MDK + ++ G G+ + +T+ EF K + + +G +KP G Sbjct: 122 SSAVCMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGEVSFIKPCNAG 181 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILP---SIRIQPS 206 SSVG++KV + ++ AL AF++D VL+E+ + G E V ++G IL ++ + Sbjct: 182 SSVGVTKVTKKEEIEPALIEAFKYDNRVLVEEAVIGDELQVLVMGNNILKASLPGGVKVT 241 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML-DSDGQ 265 F+DYEAKY + T + P L + +Q++ +A+ CKG+ R+D+ + DSD + Sbjct: 242 REFFDYEAKYFDETTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFARVDIFVRDSDRK 301 Query: 266 FYLLEANTSPGMTSHSLVPMA-ARQAGMSFSQLVVRILELA 305 + E NT PGMT+ S+ P + ++S + ++ELA Sbjct: 302 MLVNEINTIPGMTAVSMAPAMYMKTFKKTYSDFLDELIELA 342 >UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31F0A Length = 309 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 172/304 (56%), Gaps = 8/304 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K V GG S EREVS SG LR+ G +D V ++ VFIALH Sbjct: 2 KALVAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGADFVDVVQRAEPDFVFIALH 61 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GGEDGT+Q +LE++ +PYTGS +ASAL +DK K + + G+P PW + T+ F Sbjct: 62 GVGGEDGTVQDLLEILQVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAFA 121 Query: 124 KGLSDKQLAEI-SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + K L + +VKP+R+GSS G+S V L A+ A +D+ VL+E++ Sbjct: 122 DYGAGKTLDALWQQFDGRAVVKPARQGSSFGLSVVQERAQLGGAVLGAMSYDDRVLLERY 181 Query: 183 LSGPEFTVAILGE----EILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 + G E V +LG E LP + I S +Y ++A Y +++ AGL + +A++ Sbjct: 182 VPGRELAVTVLGRSDAPEPLPVVEIVMASEEYYSFQAHYEIGQSEVRL-AGLPDAVDAHV 240 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 +A+ +A++ GC+ + R+D+ L+ D + ++LE NT PG+T P+AA AG++F+QL Sbjct: 241 RAIAAEAYSAAGCRDFARVDIRLEGD-EPWVLEINTIPGLTETGPTPLAAEHAGLTFAQL 299 Query: 298 VVRI 301 + RI Sbjct: 300 IERI 303 >UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomycetales RepID=A0LWW5_ACIC1 Length = 333 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 163/308 (52%), Gaps = 6/308 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 + VL GG S EREVSL S V+ LR G+D VD + +L + VFIA+H Sbjct: 6 HVLVLAGGVSFEREVSLASARRVIEALRRLGVDVDLVDVDASVLDRLTADPPDAVFIAMH 65 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG L+ +L+L G+PY G+ + L+ DK +K + Q AG+ +A ++ Sbjct: 66 GSEGEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIR 125 Query: 124 KGLSDKQLAE-ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + L + LGLP++VKP+R GS++G++ V A AL F +D L+E++ Sbjct: 126 DLGGHQLLDRCVRRLGLPLVVKPARGGSALGVTIVREATAFAHALVTCFAYDTVALVEQY 185 Query: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 + G E ++++ + LP + I+P +DY A+Y + T+Y PA + + Sbjct: 186 VVGTELAISVVEDDDGTPRALPPVEIRPVDGMFDYAARYTAGMTEYHVPARITETARDRA 245 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 + L+A LG + R DV++ +D + LE N +PGMT SL+PMAA + G+ L Sbjct: 246 VDVALRAHQALGLRDLSRTDVIVTADDEVLYLETNVAPGMTPTSLLPMAAAEVGIDLGTL 305 Query: 298 VVRILELA 305 +L A Sbjct: 306 CRDLLVRA 313 >UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus RepID=C7RG73_ANAPD Length = 345 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 103/338 (30%), Positives = 167/338 (49%), Gaps = 41/338 (12%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-----------------DPKEVD 46 + +L GG S+E ++SL S + L E V D + Sbjct: 3 NVYILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSEAFDKIDTDNEFDL 62 Query: 47 VTQLKSMGFQ-----------------KVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 V ++K + V A+HG GEDGT+Q +L+++G+ Y G+G++ Sbjct: 63 VKEVKENKTKSIADFLTCLSKEDYSKTIVIPAVHGTYGEDGTIQALLDVIGIAYIGNGLL 122 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 +SA+ MDK+ S +++ L A ++ + F+ +D+ + E +GLP+IVKPS G Sbjct: 123 SSAICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEE---IGLPLIVKPSANG 179 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPS 206 SSVG+SKV +N L A A ++D++VL+E+ + G E A++G ++ Sbjct: 180 SSVGVSKVTNKNELLAAGDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVSEPAAYISD 239 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 TF DY+AKY S T+ P LE + Q V +A+ GC+G+ R+D+ L D F Sbjct: 240 HTFLDYDAKYFSKSTKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVDIFLGKDNNF 299 Query: 267 YLLEANTSPGMTSHSLVPMAARQA-GMSFSQLVVRILE 303 Y+ E NT PG T S SFS+++ R+++ Sbjct: 300 YVNEINTFPGFTPSSFFARLCELMYNESFSEVLDRLIK 337 >UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified Erysipelotrichaceae RepID=Q6JH79_CLOIN Length = 355 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 98/349 (28%), Positives = 171/349 (48%), Gaps = 48/349 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV---------------DPKEVDVT 48 K+A++LGG S E VSL+S +++ + + + + D E D Sbjct: 5 KLAIILGGKSDEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYSGDVDGIEHDTW 64 Query: 49 QLKS---------------------------MGFQKVFIALHGRGGEDGTLQGMLELMGL 81 ++ + +F LHG+ GEDGT+Q + EL G+ Sbjct: 65 LCEAHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQTLFELSGI 124 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY G G M A+ MDK + ++ + AG+ AP+V + A+ + A+ LGLP+ Sbjct: 125 PYVGCGHMRFAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAK-ETLGLPI 183 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE--VLIEKWLSGPEFTVAILGEEILP 199 +KP+ GSS G+ ++ + + ++A++ AF HD + V++E + G E VA++G + L Sbjct: 184 FIKPANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKELF 243 Query: 200 SI---RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 + I+ + F+DYE KY ++ +CPA + + + KA+ + CKG R+ Sbjct: 244 AGSVDEIETAAPFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRV 303 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D+ + + L E NT PG T S P ++AG+ F +L+ +++ LA Sbjct: 304 DMFVTPEDTIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352 >UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidetes RepID=DDL_FLAPJ Length = 328 Score = 306 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 103/325 (31%), Positives = 161/325 (49%), Gaps = 30/325 (9%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA------------------YPVDPKEV 45 +AV++GG S E +SL SG +L L + + YP++ + Sbjct: 2 NVAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKADF 61 Query: 46 DVTQLKSM-GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLW 104 T+ + F +HG GEDG LQ EL+ +PYTG SAL+ +K + + Sbjct: 62 SFTKNGVITKFDVAINTVHGTPGEDGHLQSYWELIDIPYTGCNFYQSALTFNKRDTLSVL 121 Query: 105 QGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ 164 +P A + L + + G K ALGLP VKP++ GSS+G+SKV A + L+ Sbjct: 122 TKFNIPKAKSIYLRKGDVIDGNEIK-----KALGLPFFVKPNQSGSSLGVSKVDALDQLE 176 Query: 165 DALRLAFQHDEEVLIEKWLSGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSDE 220 AL AF D E+LIE +L+G E +V +L ++L I F+DYEAKYL + Sbjct: 177 KALEFAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVLGITEILSQNDFFDYEAKYL-GK 235 Query: 221 TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSH 280 ++ PA + +E + K + +LG G+ R D ++ +G + +E NT+PG++ Sbjct: 236 SEEITPARISKEEEILVAESAKKIYNSLGMSGFSRTDFII-MNGIPHFIEINTNPGLSPQ 294 Query: 281 SLVPMAARQAGMSFSQLVVRILELA 305 S+ P A A M Q++ + LA Sbjct: 295 SIFPQQAMFAKMDMPQMLDNEITLA 319 >UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M114_BACS4 Length = 326 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 94/256 (36%), Positives = 140/256 (54%), Gaps = 7/256 (2%) Query: 54 GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAP 113 +F LHG GEDG++QG+L LMG P+ G V+ SA+SMDK SK L AGL + Sbjct: 60 NIDVIFPILHGSYGEDGSIQGLLRLMGKPFIGPSVLGSAVSMDKEVSKKLLSEAGLFIGK 119 Query: 114 WVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH 173 + A T+ KG D + + LG PV VKP+ +GSSVG+SKV + A+ AF++ Sbjct: 120 YFAYTKD--RKGNIDYEKVK-ENLGTPVFVKPANQGSSVGISKVYEKKKFYMAVDEAFRY 176 Query: 174 DEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYL-SDETQYFCPAGL 229 D +++IE+ + G E A+LG E + + +FY Y+AKY+ S Q PA L Sbjct: 177 DNKIVIEEEIKGREIECAVLGNEDPIASLPGEVLFTDSFYSYDAKYINSGGVQLKVPAEL 236 Query: 230 EASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQ 289 + ++ +KA+ L C G R+D L +G ++ E NT PG T S+ P Sbjct: 237 DGDDVEKVKKEAIKAFKALQCNGVARVDFFLTKEGNLFVNEINTLPGFTKLSMYPKLWEV 296 Query: 290 AGMSFSQLVVRILELA 305 +G+ + LV +++ LA Sbjct: 297 SGLPYKDLVNKMIALA 312 >UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales RepID=DDL_METS4 Length = 382 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 110/351 (31%), Positives = 154/351 (43%), Gaps = 53/351 (15%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-KEVDVTQL--------- 50 M +A+L GG SAE EVS+ S V L P+ KE +L Sbjct: 1 MRRNVALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPPLAPGEA 60 Query: 51 ----------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLP 82 S F V LHG GEDGT+QG L+L G+P Sbjct: 61 PAMVREGPRVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALDLAGVP 120 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y GSGV+ SA +MDK +K L + AGLP+ P++ + E L Sbjct: 121 YVGSGVIGSAAAMDKDVAKRLMRDAGLPIVPYLVAGPRRGVAYTEAVEALESRTL----F 176 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS-GPEFTVAILGE-----E 196 VKP+ GSSVG+S+V AL AF +DE++LIE+ + E A+L Sbjct: 177 VKPANMGSSVGVSRVADAGQFDQALAHAFAYDEKILIERAVPRAREIEFAVLETAEGEVR 236 Query: 197 ILPSIRIQP--SGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 + P I P + FY Y+AKY+ D PA L + + L +A+ L C G Sbjct: 237 VSPPGEIAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALACAGL 296 Query: 254 GRIDVMLDSDGQ--FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 R+D+ LD D ++ E NT PG T+ S+ P AG++ L+ ++ Sbjct: 297 ARVDLFLDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 347 >UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes RepID=D2LR31_BACS4 Length = 404 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 160/369 (43%), Gaps = 68/369 (18%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE----------VDVTQL 50 M ++AV+ GG S E EVS+ S + + E + PV + +D+ + Sbjct: 8 MRTRVAVIFGGMSVEHEVSVISALQAIQNMDESRYEIIPVYISKEGAWYTGDTLLDIEEY 67 Query: 51 KSMG------------------------------------FQKVFIALHGRGGEDGTLQG 74 K++ F +HG EDG LQG Sbjct: 68 KNLKGLLAKSQRIQLLREGDNRVIINKEPKPKFGKAYINEIDVAFPIVHGTFAEDGVLQG 127 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 LEL+GLPY G V++S+ MDK+ K +++ +GLP+ +V ++ + + Sbjct: 128 YLELLGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYVWFYSTKWNEDQDELVKKVE 187 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAIL 193 L PVIVKP+ GSSVG+SK + L++A+ LA Q +++IEK + E ++L Sbjct: 188 GKLQYPVIVKPANLGSSVGISKAANVDELEEAVELASQFANKIVIEKMVQNMTEINCSVL 247 Query: 194 GE----EILPSIRIQPSGTFYDYEAKYLS------------DETQYFCPAGLEASQEANL 237 G+ E ++ + YE KY + T PA + + + Sbjct: 248 GDYEAAEASVCEQVLGNDEILSYEDKYAGGGSKGGGASKGMESTNRIIPADISEEKTKEI 307 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 Q L + A+ LGC G RID ++D+D ++ E NT PG SL G + + Sbjct: 308 QELAVAAFQVLGCSGVSRIDFLIDNDTNNVFINEINTIPG----SLSFYLWEPTGKPYKE 363 Query: 297 LVVRILELA 305 L +++LA Sbjct: 364 LTNDLIQLA 372 >UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria RepID=DDL_BIFLI Length = 395 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 143/281 (50%), Gaps = 20/281 (7%) Query: 42 PKEVDVTQLKSMGF-QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 P L S+G V LHG GEDGT+QG+LE+MG+PY G GV ASA MDK + Sbjct: 112 PDPEMHHALTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYT 171 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 K++ AG+P AP V + F ++ E + L P+ +KPSR GSS G++KV Sbjct: 172 KVVLGAAGIPTAPGVTVDARNFTAADVLAKI-EDAGLTYPLFIKPSRAGSSFGVTKVEKA 230 Query: 161 NA-------LQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILP----------SIRI 203 + L A+ A +HD +VL+E+ + G E A+L + + Sbjct: 231 DDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDH 290 Query: 204 QPSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 Q FYD+++KY+ + PA L S +++ + +A+ + G R+D + Sbjct: 291 QNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP 350 Query: 263 DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 DG + E NT PG T S+ P A G+S+++L+ R++E Sbjct: 351 DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 Score = 46.9 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 18/39 (46%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV 40 ++ VL GG + E +S S A VL + + PV Sbjct: 3 KKRVVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPV 41 >UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteriaceae RepID=C6X2F8_FLAB3 Length = 339 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 100/329 (30%), Positives = 159/329 (48%), Gaps = 32/329 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------------PVDP 42 +AV++GG S E VSL SG + L + Y PV+ Sbjct: 14 KKNVAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKDEWYFLDDREQKVPVNK 73 Query: 43 KEVDVTQLK--SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 + V + F F +HG+ GE+G LQ + +G YTG G SAL+ +K + Sbjct: 74 ADFSVNLDSGFDVKFDVCFNIIHGKPGENGELQAYWDTIGQKYTGCGFYQSALTFNKKDT 133 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 + G+P A V + + E + + I L LP+ VKP++ GSS+G+SKV + Sbjct: 134 LAVLSKYGIPAAKSVYIRKGE-----AIDEDGIIEDLKLPLFVKPNQSGSSLGISKVKDK 188 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG----EEILPSIRIQPSGTFYDYEAKY 216 + Q A+ AF+ D+EVLIE +L G E +V ++ +L I F+DYEAKY Sbjct: 189 SEFQKAIDFAFEQDDEVLIESFLDGMEVSVGVVDFNGESIVLGITEIVSHKEFFDYEAKY 248 Query: 217 LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 ++ PA ++ ++ + KA+ +LG G+ R + ++ G Y+LE NT+PG Sbjct: 249 -EGASEEITPARIDDETRQKVEEIAKKAYNSLGMSGFSRSEFIIMG-GTPYMLEMNTNPG 306 Query: 277 MTSHSLVPMAARQAGMSFSQLVVRILELA 305 + S++P A+ G+S L +E A Sbjct: 307 FSPASILPQQAKIYGISIKDLCGNEVEKA 335 >UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=DDL_BACFN Length = 324 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 94/327 (28%), Positives = 158/327 (48%), Gaps = 30/327 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------------PVD 41 M IA++ GG ++E VSL S + + + + + Y PVD Sbjct: 1 MKRNIAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLQDGSKTPVD 60 Query: 42 PKEVDVTQL-KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 + + + F +I +HG GEDG LQG +++ +PY+ GV+A+A++ DK Sbjct: 61 RNDFSFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMIRIPYSCCGVLAAAITYDKFVC 120 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 + G+ ++ + L + + +SD+ + E +GLP +KP+ GSS G++KV Sbjct: 121 NQYLKAFGVRISESLLLRQG---QAVSDEDVVE--KIGLPCFIKPNLGGSSFGVTKVKTR 175 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKY 216 +Q A+ AF EEV+IE ++ G E T + + P + F+DY+AKY Sbjct: 176 EQIQPAIAKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKY 235 Query: 217 LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 + + PA + +Q L + LGC G R+D ++ + LLE NT+PG Sbjct: 236 -NGQVDEITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITEGEKINLLEVNTTPG 294 Query: 277 MTSHSLVPMAARQAGMSFSQLVVRILE 303 MT+ S +P R AG+ ++ I+E Sbjct: 295 MTATSFIPQQVRAAGLDIKDVMTDIIE 321 >UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho africanus TCF52B RepID=DDL_THEAB Length = 367 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 166/347 (47%), Gaps = 52/347 (14%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------------------- 40 + +L G S E E+S+ + VL+ + + + P+ Sbjct: 3 NVGLLFGSKSVEHEISIITAHQVLSFVDKNKYNIIPIYITKDGKWLTGKILEDLENFKNL 62 Query: 41 ----------------DPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 D K + + +K + + HG GEDG++QGMLE + +PYT Sbjct: 63 ERLEKKSKQISSISAKDGKLILHSNIKKITIDVCLLTFHGSNGEDGSIQGMLEFLNVPYT 122 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 G G+ +S +MDK+ +KL+ + +PV ++ + + +D L P+IVK Sbjct: 123 GCGMYSSMYTMDKVITKLILKEKNIPVVDFLYTNKKNY---TNDFLNHCKEVLEYPMIVK 179 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQ 204 P+R GSS+G+ KV + L++A+ AF D++V++EKW+ E A++G + + I+ Sbjct: 180 PARLGSSIGVKKVNDKCELEEAIETAFSFDDKVIVEKWIDSRELNCAVMGYKNIVVSEIE 239 Query: 205 P---SGTFYDYEAKYLSDE---TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 F+DY KY+ + + PA ++ + + ++++ + L C G RID Sbjct: 240 EIKKQKDFFDYNEKYVQKGKKFSNHIIPAPIDENLKNTIKSIARDTFNALECHGNIRIDF 299 Query: 259 MLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +L D + Y+ E N+ PG S+ L + +G +FSQ++ ++ +A Sbjct: 300 LLSKDNKIYVNEVNSIPGALSYYL----WQMSGFTFSQVIDNMISIA 342 >UniRef50_A9N8L3 D-alanine--D-alanine ligase n=6 Tax=Coxiella burnetii RepID=DDL_COXBR Length = 372 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 152/353 (43%), Gaps = 50/353 (14%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLREGGI-----------DAYPVDPKEVDV 47 M +K I+VL GG S E E+S+ S ++ L Y +D E+ + Sbjct: 1 MAEKLHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFL 60 Query: 48 T-------------------------------QLKSMGFQKVFIALHGRGGEDGTLQGML 76 + VF +HG GEDG LQG+L Sbjct: 61 AHSPDHLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLL 120 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 EL+ LPY G+ V +SA+ M+K +K + + G+PV W L+ + +G+ + L Sbjct: 121 ELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGT 180 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE- 195 + VK GSSV V E A++ F++D+ +++E + G E A+LG Sbjct: 181 --SELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIRGREIECAVLGNG 238 Query: 196 --EILPSIRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKG 252 + I P +Y Y+AKYL + L S +Q + + A+ + C G Sbjct: 239 APKASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSG 298 Query: 253 WGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D + + + + E NT PG T+ S+ P +G+ L+ +++ELA Sbjct: 299 MARVDFFVTPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 351 >UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BAK0_9FIRM Length = 320 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 89/264 (33%), Positives = 138/264 (52%), Gaps = 13/264 (4%) Query: 56 QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWV 115 F LHG GEDGT+QG+ EL LPY G V AS+ MDK+ +K +++ AG+P V Sbjct: 55 DVAFPVLHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKVFESAGIPQVKSV 114 Query: 116 ALTRAE------FEKGLSDKQLAEIS---ALGLPVIVKPSREGSSVGMSKVVAENALQDA 166 + + EK + + + E S LG+P +K SR GSSVG + E L Sbjct: 115 YVKKRNDGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGCYRCDKEEDLMAK 174 Query: 167 LRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR---IQPSGTFYDYEAKYLSDETQY 223 L A ++D +++E+ + E A+LG + + R I P G FY +E+KY E++ Sbjct: 175 LEEAAKYDTHIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYTFESKYEDAESKT 234 Query: 224 FCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSL 282 PA ++ + ++ ++A+ + G R+D LD YL E NT PG TS S+ Sbjct: 235 CIPAKVDEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLNEINTLPGFTSISM 294 Query: 283 VPMAARQAGMSFSQLVVRILELAD 306 P G S+S+L+ +++E+AD Sbjct: 295 YPQLMEDYGYSYSELLDKLIEIAD 318 >UniRef50_Q6A5C1 D-alanine--D-alanine ligase B n=4 Tax=Propionibacterium acnes RepID=Q6A5C1_PROAC Length = 327 Score = 301 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 160/308 (51%), Gaps = 5/308 (1%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M + VL GG S +R++SL SG V LR G + D + L++ VF Sbjct: 13 MLQPVVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFP 72 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GE+G L +L+LMG+PY GS +S DK + AG+ VAL Sbjct: 73 MLHGGLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHD 132 Query: 121 EF-EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 F E G + GLPVIVKP+R GSS+G++KV + L A+ A+ +D+ V++ Sbjct: 133 VFRELGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVANAYAYDDMVVV 192 Query: 180 EKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+++ G E + ++ G +LP++ I+P G YDY A Y ET+ PA + + Sbjct: 193 EEFIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQ 252 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 A+ L G R+D ++D G+ LEA +PGMT+ SLVP+A + AG+ Sbjct: 253 TATAMARVVQKELDFSGISRVDAIVDESGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLG 312 Query: 296 QLVVRILE 303 ++ R+++ Sbjct: 313 EVCSRLVD 320 >UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9U3_BLASP Length = 331 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 100/323 (30%), Positives = 164/323 (50%), Gaps = 32/323 (9%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------------PVDPK 43 KIA+++GG + E +SL SG V L + + Y PV+ + Sbjct: 2 KKIAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIEKWILKDKNNKEYPVNKQ 61 Query: 44 EVDV--TQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 + V T + + F VF A+HG GEDG LQ L+ +PYTG ++++ +K Sbjct: 62 DFTVRITNDQILKFDCVFNAIHGTPGEDGVLQAYFHLLKIPYTGCHFHHASVTFNKKYCL 121 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN 161 + G+ AP L + + +K++ + +GLP VKP+R GSS+G+SKV E Sbjct: 122 TFLKEFGIKTAPSFFLNK---NQSFCEKKI--LKKVGLPCFVKPNRSGSSLGISKVYQER 176 Query: 162 ALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYL 217 L A+ AF+ D+E+++E +L G E +V ++ ++LP I F+D+E+KY Sbjct: 177 ELAKAIEHAFRKDQEIIVESFLKGTEVSVGVISWNQDIKVLPITEIISRNDFFDFESKY- 235 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 S ++Q PA L S E ++ L + L G R + +L +G + LE NT PG+ Sbjct: 236 SGKSQEITPARLLPSLEKKIKKLAKNVYEILNLSGISRSEYIL-VNGDPFFLEINTIPGL 294 Query: 278 TSHSLVPMAARQAGMSFSQLVVR 300 + S++P + AG+S S+L + Sbjct: 295 SEESILPKQLKIAGISLSELFKK 317 >UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteriales RepID=A4CP91_9FLAO Length = 329 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 107/328 (32%), Positives = 164/328 (50%), Gaps = 31/328 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------------PVDP 42 T KIAV++GG S+E E+SL SG V L D Y PV Sbjct: 4 TKKIAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGREYPVSR 63 Query: 43 KEVDVT-QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 + V + ++ F VF A+HG GE+G +Q EL+G+P T G +A++ +K Sbjct: 64 HDFSVELEDGTLRFDCVFNAIHGTPGENGLMQAYFELIGMPQTSCGFYQAAVTFNKRDLL 123 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN 161 + + AG+P A L R + Q A + A+GLP VK +R GSS G+S V + Sbjct: 124 GILKSAGVPAARSYHLDRGQELN-----QQAILDAVGLPCFVKANRAGSSFGVSLVREAS 178 Query: 162 ALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYL 217 LQ A+ A + D+E+LIE L G E +V ++ +LP I F+DY+AKY Sbjct: 179 GLQAAVENALKEDDEILIEAALQGTEVSVGVIRYQGATRVLPITEIVSENDFFDYQAKY- 237 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 +++ PA + ++ L + + L G+ R + +L DG+ +LLE NT+PG+ Sbjct: 238 EGKSREITPARIPEDTAEKVRELAARIYDRLRMTGYSRSEFIL-VDGEPHLLEVNTTPGL 296 Query: 278 TSHSLVPMAARQAGMSFSQLVVRILELA 305 T S++P A AG+S ++L + A Sbjct: 297 TEASILPQQAACAGISLTELFGSAIADA 324 >UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomonas putida RepID=DDLA_PSEPK Length = 352 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 109/347 (31%), Positives = 164/347 (47%), Gaps = 50/347 (14%) Query: 1 MTDK-IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------DPKEVDV 47 M IA++ GG S+E V+L S A + A L G + V +P + Sbjct: 1 MKQNVIALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPG 60 Query: 48 TQLKS------------------------MGFQKVFIALHGRGGEDGTLQGMLELMGLPY 83 +S +G +F ALHGR GEDGT+QG+ + GLP Sbjct: 61 AVDRSAPLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPC 120 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 GSGV+ SA++MDK +K + Q AGL V PW+A+ + L + + + V Sbjct: 121 VGSGVLGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMRPWEELVECLGSST------LFV 174 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE------I 197 KP+ GSS+G+S+V A +A + D +VL+E + G E +L E + Sbjct: 175 KPATSGSSIGVSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASV 234 Query: 198 LPSIRIQPSGTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 + I + +YDY+AKY S+ T P+ L A +QAL ++A+ L KG+ R+ Sbjct: 235 VGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARV 294 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 D L +G+ L E NT PG TS S+ P +G +LV ++E Sbjct: 295 DFFLTEEGEIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVE 341 >UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma centrale str. Israel RepID=D1ASV0_ANACI Length = 336 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 151/303 (49%), Gaps = 10/303 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 IAVL GG+S EREVSL G + L G A VD QL +M V+ ALHG Sbjct: 15 IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG G+L+++GL YT S V AS++ MDK+ +K + + G+ + LT+ E Sbjct: 75 GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEV-- 132 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 L+ + P ++KP GS++G+ + + + D A + +L+E+++ Sbjct: 133 ------LSAKEVMPYPFVIKPICGGSTIGVHAIFSRSEYLDLSVHADALEGRMLVEEYIP 186 Query: 185 GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 G E A+ + ++ G Y Y+AKY+ ++ PA L + +K Sbjct: 187 GQEVHTAVFLGRAIGTMEFLFEGRVYGYDAKYVEGLCRHVFPANLSDDVYSLTMEWAVKL 246 Query: 245 WTTLGCKGWGRIDVMLDSDGQ-FYLLEANTSPGMTSHSLVP-MAARQAGMSFSQLVVRIL 302 + LGC+ R+D D + LLE NT PGMT+ S +P + + G+ F Q+V I+ Sbjct: 247 YQCLGCRTVSRVDFRYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIV 306 Query: 303 ELA 305 + A Sbjct: 307 KDA 309 >UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=DDL_GRAFK Length = 326 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 101/329 (30%), Positives = 158/329 (48%), Gaps = 31/329 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------DPKEVDVT 48 M KIA+ +GG S+E +S+NSG V L + Y V D + Sbjct: 1 MKKKIAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILKGEWFVVADDDTPYPIN 60 Query: 49 Q--------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 + K + F VF +HG GE+G LQ LEL+G+P T SAL+ +K Sbjct: 61 KSNFTVKINDKVIQFDCVFNTIHGTPGENGLLQAYLELIGIPQTSCDYYQSALTFNKRDL 120 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 + + G+ A L + + + +GLP VK +R GSS G++KV E Sbjct: 121 ISVLRPYGIKAATNYFLNKDQEINTKE-----IVDKVGLPCFVKANRAGSSFGVTKVKTE 175 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKY 216 + + A + AF D+E +IE +L G E +V ++ + LP I P G F+DYEAKY Sbjct: 176 DEIISAAKTAFTEDDEAIIESFLDGTEVSVGVITYKGKVLALPVTEIIPDGEFFDYEAKY 235 Query: 217 LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 L ++Q PA + +Q + + + L KG R + + +G+ + +E NT+PG Sbjct: 236 L-GKSQEITPARISEEDTKKVQDIAIMIYKKLKMKGLSRSEFIF-HEGEPHFIEMNTNPG 293 Query: 277 MTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ S++P A +AG+S L +E A Sbjct: 294 ISQASILPQQAEKAGISLKDLFGSTIEAA 322 >UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomycetales RepID=D1BRV4_XYLCX Length = 349 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 112/307 (36%), Positives = 169/307 (55%), Gaps = 6/307 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++ VL GG S ER+VSL SG V LR G+D D + L V+ LH Sbjct: 38 RVVVLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRYLDEHRPDVVWPLLH 97 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GGEDG+L+ +LEL G+PY G+G AS L+ DK +K Q AGL W+ L + F Sbjct: 98 GAGGEDGSLRDVLELAGVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQELFR 157 Query: 124 KGLSDKQLAEIS-ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + L+ ++ GLPV+VKP+R GS++G+++V +++ L A+ F + + LIE+ Sbjct: 158 DLGAQGVLSIVAERFGLPVVVKPTRGGSALGVTRVTSKDGLARAMVDCFAYGDSALIERA 217 Query: 183 LSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 + G E V+++ G LP++ I G YD++A+Y +YF PA L Q A++ Sbjct: 218 VDGVEIAVSVIDGMDGPVALPAVEIIVDGP-YDFDARYNPGRVEYFAPARLSPDQAAHVA 276 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + + A L + R D++L +DG +LE N +PGMT SL+P AA AG L Sbjct: 277 GVAVAAHQALDLRHLSRTDLILQTDGTAQVLEVNVAPGMTETSLLPQAAVAAGHDLGTLY 336 Query: 299 VRILELA 305 +++E A Sbjct: 337 RQVVEHA 343 >UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=DDL_WIGBR Length = 350 Score = 300 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 157/347 (45%), Gaps = 49/347 (14%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE---------------- 44 M +AVL GG S E E+SL S +++ + + + + ++ Sbjct: 1 MKKTVAVLFGGESKEHEISLQSSISIINAIDKKKYNIILIGVEKNGKIGIRSINNYILFK 60 Query: 45 --------------------------VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLEL 78 + K + +F LHG GE+G QG+ Sbjct: 61 YNINYIKLAPAVSYLYIIPGKNNYQFYSLKNKKMLKIDVIFSILHGSNGENGAFQGLFNT 120 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 + P+ GS V++S++ MDK SK + G+ V P + L + + K I+ + Sbjct: 121 IYTPFVGSNVLSSSICMDKDISKRILSTFGISVVPSITL----YYENYKKKINKIINNIK 176 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 P +KPS +GSS G++ +L++++ +AF + +++LIE ++ G E V +LG + Sbjct: 177 FPCCIKPSNQGSSFGVNVANDFISLKESIDVAFLYSKKILIEPFIQGREIEVGVLGNRNV 236 Query: 199 ---PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 I+ FYDY+ KY+S +T+ PA + ++ + A+ +L C R Sbjct: 237 ISSVCGEIKFKKIFYDYKEKYISKKTKIIIPAKISNEISNKIKKIAKLAFISLECSIMAR 296 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +D L + + +L E NT PG T +S+ P ++G+ F L+ +++ Sbjct: 297 VDFFLTKNKKIFLNEINTIPGFTKNSIYPKLWSKSGLDFKSLINKLI 343 >UniRef50_B9KHS3 D-alanine--D-alanine ligase n=5 Tax=Anaplasma marginale RepID=DDL_ANAMF Length = 334 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 155/303 (51%), Gaps = 10/303 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 +AVL GG+S EREVSL G V L G +A +D V QL +M V+ ALHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG + G+L+++GL T S V AS++ MDK+ +K + + G+ + LT+ E Sbjct: 74 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEEL-- 131 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 L+ L P ++KP R GS++G+ + +++ D A ++ +++E+++S Sbjct: 132 ------LSAKEVLPYPFVIKPVRGGSTIGVHAIFSKSEYLDLSAHADTLEDRMIVEEYVS 185 Query: 185 GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 G E A+ + ++ + G Y Y+AKY+ ++ PA L LK Sbjct: 186 GQEVQTAVFLGRAIGTMELLFEGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKL 245 Query: 245 WTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPM-AARQAGMSFSQLVVRIL 302 LGCK R+D D ++ LLE NT PGMT S +P + G++F +V I+ Sbjct: 246 HQCLGCKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIV 305 Query: 303 ELA 305 + A Sbjct: 306 QDA 308 >UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GNT9_STRCL Length = 312 Score = 299 bits (766), Expect = 9e-80, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 161/310 (51%), Gaps = 11/310 (3%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 MT ++A+L GG S E + S S A LRE G + VD D + + F+ FI Sbjct: 1 MTMRVAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFWK-RLPDFEAAFI 59 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 A HG EDG LQG+LE+MGLPYTGSGV+AS++ M K K L G+ PW ++R Sbjct: 60 AGHGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRG 119 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH-DEEVLI 179 + + + +GLP+ KP+ G S V ++ L++ L ++ +E + Sbjct: 120 ----ATAAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYSSDEFIA 175 Query: 180 EKWLSGPEFTVAILG----EEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E +L+G FTV +L E LP + FYD EAK +Y CPA + S Sbjct: 176 EPFLTGNTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRD 235 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 +Q L ++ +T GC+G R+D ML D + +LE NT PG+T + A+ +G+ + Sbjct: 236 RMQELAVRVFTVCGCRGVARVDFMLSED-RPVVLEVNTVPGLTLQGNLAAMAKASGLGYR 294 Query: 296 QLVVRILELA 305 ++V +L+ A Sbjct: 295 RVVEIMLQSA 304 >UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Streptococcus pneumoniae RepID=C1C760_STRP7 Length = 321 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 99/328 (30%), Positives = 152/328 (46%), Gaps = 38/328 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV---DVTQLKS----- 52 + KI VL GG S EREVS NS + L G D +D + ++ +++ Sbjct: 3 IIKKIVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGL 62 Query: 53 ---------------MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK 97 VF+A HG GE+G LQ + ++ + YTG+ +++A+SMDK Sbjct: 63 NKQKVEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDK 122 Query: 98 LRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKV 157 SK++ G+ A + + R + P+++KP R GSS G+ + Sbjct: 123 KLSKIVASSVGIKCASNLMVDRIQAND--------------FPIVIKPIRSGSSKGIKIL 168 Query: 158 VAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYL 217 + + + +EK++ G EF+V ILGE +LP I I+ FYDY KY Sbjct: 169 QNKKQFDIYYKEHPELGS-FFVEKYIKGREFSVGILGETVLPVIEIKVKNGFYDYNNKYT 227 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 + PA + LQ K LG + R D ++D G Y +E+N+ PGM Sbjct: 228 VGAAEEVVPAKISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEKGDVYFIESNSLPGM 287 Query: 278 TSHSLVPMAARQAGMSFSQLVVRILELA 305 T SL+P A+ AG+ F L RI+EL+ Sbjct: 288 TKTSLLPQEAKAAGIDFPNLCERIIELS 315 >UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R862_9FIRM Length = 392 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 103/361 (28%), Positives = 157/361 (43%), Gaps = 63/361 (17%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------DPKEVDVTQL 50 M K+ V GG S E E+S+ S V+ + + P+ P ++ + Sbjct: 13 MRIKVVVAFGGESVEHEISILSAHQVMQAMNPMKYEVIPLYIAKDGRLLYHPLNTELERF 72 Query: 51 ---------------------------------KSMGFQKVFIALHGRGGEDGTLQGMLE 77 K + F VF LHG GEDGT QG L Sbjct: 73 ENLDKVEREGYEVSLQRRGNRFYMCPNKYSFLRKEISFDMVFPILHGTHGEDGTFQGYLS 132 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 + +PY G V+ A+ DK+ K + + +GLPVAPW T K L D + L Sbjct: 133 TLHIPYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWFYWT---LLKPLDDTFFRKAERL 189 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILGE- 195 G P+IVKP+ GSS+G++KV E L A+ A+Q+D V+IEK + E A+LG+ Sbjct: 190 GYPLIVKPANLGSSIGVAKVENEVELHRAMIEAYQYDGRVVIEKAIEHVQEINCAVLGDE 249 Query: 196 ---EILPSIRIQPSGTFYDYEAKYLSDE-------TQYFCPAGLEASQEANLQALVLKAW 245 E + S Y KY+ E T+ PA ++ +Q L + + Sbjct: 250 QTCEASVLEEVLSSKDILSYADKYVCGEGVKGIVNTRRCIPARIDEELALEIQTLAKECF 309 Query: 246 TTLGCKGWGRIDVMLDSDGQ-FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 L G GRID + + + + Y+ E NT PG SL ++ + F +L+ R++++ Sbjct: 310 RCLCASGTGRIDFLYNRETKDLYINEINTIPG----SLAFYLWEKSNLPFPKLIDRLVQI 365 Query: 305 A 305 A Sbjct: 366 A 366 >UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostocaceae RepID=DDL_OENOB Length = 377 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 174/351 (49%), Gaps = 49/351 (13%) Query: 1 MTDKI--AVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------ 40 M +KI + GG S+E +VS S L +PV Sbjct: 1 MAEKIRVGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIMIDSETSKRVL 60 Query: 41 ---DPKEV-------------DVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 D E+ + ++++ +F ++HG GEDGTL G+ LM +PY Sbjct: 61 FGEDEDELLAGLPNKNADIFGPIDSIRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYV 120 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 GSG+ A A+S DK+ +K L G+ ++ + + + K D + LG V VK Sbjct: 121 GSGLRAHAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWD---SVSKQLGEVVFVK 177 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGP-EFTVAILGEEILPSIRI 203 + +GSSVG+S+V ++ALR +FQ+DE++L+EK + P E + +LG + + + I Sbjct: 178 AANQGSSVGVSRVTNAEEYENALRDSFQYDEKLLVEKAVESPTELEIGLLGNDRVITSPI 237 Query: 204 --------QPSGTFYDYEAKYLSDET-QYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 ++DY+ K++ + +Y PA + ++ L+ + +KA+ LG KG+ Sbjct: 238 GAHWAPGQDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVLGIKGFA 297 Query: 255 RIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 RID ++ DG+ +L E NT PG T+ SL P+ AGM+ SQ ++++LA Sbjct: 298 RIDFLMSKDGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLA 348 >UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=C1YHT6_NOCDA Length = 374 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 108/360 (30%), Positives = 169/360 (46%), Gaps = 60/360 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------DPKEVDVTQL 50 ++AV+ GG S+E E+S + +VL+ + + PV DP+ + + Sbjct: 9 RVAVVFGGRSSEHEISCVTAGSVLSVVDHDRYEIVPVGITRTGNWVLTSGDPESLRIDAG 68 Query: 51 ----------------------------------KSMGFQKVFIALHGRGGEDGTLQGML 76 + G V LHG GEDGT+QG+ Sbjct: 69 TRALPSVSEDGVDLALPFDSAGQLMVVDPVKGPERLAGVDVVLPLLHGPFGEDGTIQGLF 128 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 E+MG+ Y G+GV +S+ SMDK+ K + +G G+P + +VA+T ++ + + L +++ Sbjct: 129 EMMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFVAITDRQW-RTERKRVLDDVAE 187 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLA---FQHDEEVLIEKWLSGPEFTVAIL 193 LG V VKP+R GSSVG+SKV + + +HD +VL+E + G E +L Sbjct: 188 LGATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREHDPKVLVEAQVVGREVECGVL 247 Query: 194 GEE-------ILPS-IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAW 245 E LP+ + + FYD+EAKYLS + PA L A L+AL + + Sbjct: 248 ESEDGGTPDVSLPAEVHVADGFDFYDFEAKYLS-TSSLTIPAELPEEATARLRALAAEVF 306 Query: 246 TTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +GC+G R+D DG + E NT PG T S P G+ ++ LV R++ A Sbjct: 307 EAMGCEGLARVDFFYTEDGDILVNELNTMPGFTPASAFPQMWAATGVDYAALVERMISTA 366 >UniRef50_Q8RDQ4 D-alanine--D-alanine ligase n=10 Tax=Fusobacterium RepID=DDL_FUSNN Length = 287 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 107/303 (35%), Positives = 162/303 (53%), Gaps = 22/303 (7%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIAL 62 +IAV +GGTS+E+E+SL SG AVL L++ G DAY V E + V+ + ++ L Sbjct: 2 RIAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GE+G +Q +L+++G YTGSGV+ASA++MDK ++K + Q G+ Sbjct: 62 HGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSY------- 114 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + + EI PVI+KP EGSS G+ + ++A++ + +IE + Sbjct: 115 ------RPVEEIER--FPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA----KPIIEDY 162 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGT-FYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E TV +L E L ++I P YDY++KY + + PA +E + Sbjct: 163 IIGEELTVGVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIA 222 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 K + G KG R D +L S+G+ Y LE N+SPGMT SL+P A G SF +V Sbjct: 223 EKIHSEFGMKGISRSDFIL-SEGELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRIT 281 Query: 302 LEL 304 +E Sbjct: 282 VET 284 >UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriaceae RepID=D1AUY0_STRM9 Length = 299 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 101/303 (33%), Positives = 171/303 (56%), Gaps = 12/303 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-KEVDVTQLKSMGFQKVFIAL 62 +I V+ GG S EREVS+N+G ++A L + + ++ K+ D+ ++ + +IAL Sbjct: 2 RIGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKKEDIFKVVDLNLDFAYIAL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GE G +Q +LE G+ Y+GSG+++SA+ MDK +K+L + +G+ + + + E Sbjct: 62 HGEFGESGDVQAILETAGIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGEN 121 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHD-EEVLIEK 181 K LG +I+KP+R GSS+G+ + L+ L F+ EVLIE+ Sbjct: 122 IK-------FSDLNLGEKIILKPNRGGSSIGVYFATNDEELEYGLNEIFKLGENEVLIEE 174 Query: 182 WLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 SG E +V I+ ++ P++ I+P TF+DY +KY + + + E S + + Sbjct: 175 MKSGIEISVPIIAGKVFPTLLIEPLKDTFFDYTSKYENGGAKEYV-YFFEESLQNEINDF 233 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 +KA+ + CKG+ RID +L D + Y LE NT PGMT +SL+P + G S+S+ + Sbjct: 234 TIKAYNAVKCKGFARIDYIL-VDNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLDL 292 Query: 301 ILE 303 +++ Sbjct: 293 LIK 295 >UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Streptomyces roseosporus NRRL 15998 RepID=UPI0001AECDB6 Length = 320 Score = 296 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 148/306 (48%), Gaps = 9/306 (2%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 + VL GG S ER SL SG L G + +D E + IALHG Sbjct: 11 VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLIDTAEPQAIESI-QKIDVALIALHG 69 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GGEDG +QG+LE++G+PYTGSGV+ASA+ M K K L GL W+ L + Sbjct: 70 PGGEDGKIQGLLEILGVPYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPSLTSD 129 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE-EVLIEKWL 183 +S S +G PV +KPS G S+G + + L + D E L+E+++ Sbjct: 130 EMSKVV---ESHVGWPVFIKPSAGGGSLGAGIGRSPSDFAHMLADLNRQDYLEYLVEEYV 186 Query: 184 SGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 G +V ++ E LP ++ FYDY AK+ + CP+ L LQ Sbjct: 187 PGRPCSVGVIETSGRPEALPVHDVETDREFYDYAAKHDPSKRIENCPSILPKDVTERLQE 246 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 ++ G G R+D ++D +G+ +LE NT PG++ + A+ AGMS+ LV Sbjct: 247 EAVRIHMLTGAHGVSRVDFIVDDNGRSVILEINTVPGLSDMGNLATMAKAAGMSYPALVT 306 Query: 300 RILELA 305 +L+ A Sbjct: 307 AVLKTA 312 >UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B1ZUU9_OPITP Length = 311 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 155/302 (51%), Gaps = 10/302 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREG-GIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 IAV GGTS+EREVSL SG A A L + ++ + +D + VF LH Sbjct: 6 IAVFSGGTSSEREVSLGSGQACAAALEKSFRVERFQIDADALPAGLDPQRH--VVFSTLH 63 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG +Q +L+ G+ Y G ++SAL+MDK +K G+ V P V F Sbjct: 64 GTFGEDGGMQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVT-----FP 118 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + I G V+VKP+ EGSSVG++ V + L L + + +IE+ + Sbjct: 119 AAKKPRPEQVIEQFGERVVVKPNAEGSSVGLNLVGSREELTRVLDVI--QNGRWIIERRI 176 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E V +L + + I+P YDY +KY T Y PA L+A+ +QA Sbjct: 177 FGRELAVGVLNGRAMGVVEIRPKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQT 236 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ GC+ + R+D +L D + YLLE NT PGM SL+PM+AR G+ F+ LV ++ Sbjct: 237 AFAACGCRDYARVDFILGDDHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAMVT 296 Query: 304 LA 305 A Sbjct: 297 PA 298 >UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococcus RepID=DDL_PROMP Length = 355 Score = 295 bits (757), Expect = 9e-79, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 160/354 (45%), Gaps = 49/354 (13%) Query: 1 MTDK----IAVLLGGTSAEREVSLNSGAAVLAGL-------------------------- 30 M +K I ++ GG S E +VS++S V L Sbjct: 1 MLEKEKKCIGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDND 60 Query: 31 ----------REGGIDAYPVDPKEVD--VTQLKSMGFQKVFIALHGRGGEDGTLQGMLEL 78 + ID V PK + ++ G F LHG GEDG + G+L+ Sbjct: 61 QSLVLLKEKRKNETIDKNQVFPKREINFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKF 120 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE--ISA 136 P G G++ SAL MDK+ K ++ +P ++ + + L+ I Sbjct: 121 TQKPIVGGGILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEK 180 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE 196 L LPV VKP+ GSS+G+SK + + AL+ A++ D ++IE+ L E I+G Sbjct: 181 LKLPVFVKPANSGSSLGISKAKTRSEIIKALQKAWEIDSRIVIEEGLDVRELECGIIGNL 240 Query: 197 ILPSIRI---QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 L + I S +YDY++KY D Q PA +++ ++ + +++ L G+ Sbjct: 241 KLTASEIGEVSYSTDWYDYDSKYSMDN-QIIIPADIDSQISEQIKDIAIRSCRALNIYGF 299 Query: 254 GRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 R+D L+ + +L E NT PG TS S+ PM +G++ QLV ++++++ Sbjct: 300 ARVDFFLEKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDISS 353 >UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9D0_9PORP Length = 329 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 102/326 (31%), Positives = 155/326 (47%), Gaps = 25/326 (7%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-----------------KE 44 IA++ GG S E EVS S +L + + Y V Sbjct: 3 KPNIAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADAWSVTDATGREGTIDR 62 Query: 45 VDVTQL--KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL 102 V + + + F +I +HG GE+G LQG L+++G+PYT GV+ AL+ +K Sbjct: 63 ALVARFGAEEVTFAVAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNA 122 Query: 103 LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA 162 GL +A L E ++Q E S L LP+ VKP+ GSS+ +++ + Sbjct: 123 YLAHHGLRIARSQRLHNQTKELSPEEQQQIE-STLRLPLFVKPNTGGSSIATTRIEQWDQ 181 Query: 163 LQDALRLAFQHDEEVLIEKWLSGPEFTVA--ILGEEI--LPSIRIQPSGTFYDYEAKYLS 218 L A+ A+ +VL+E+ + G E T IL +E LP + TF+DY+AKY Sbjct: 182 LATAVVDAYTAAPDVLVEECIVGTEVTCGCVILPDEAFALPVTEVVAHDTFFDYDAKY-Y 240 Query: 219 DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMT 278 ++ PA + +Q L L C G+ RID ++++DG LLE NT+PGMT Sbjct: 241 GKSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDFIIEADGIPTLLEVNTTPGMT 300 Query: 279 SHSLVPMAARQAGMSFSQLVVRILEL 304 S +P R AG+ S L+ RI++ Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIKS 326 >UniRef50_D0RN14 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Bacteria RepID=D0RN14_9RICK Length = 305 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 12/308 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 KI +L+GG S ER VS++SG A +++ G + Y DP + +K + VF Sbjct: 4 KKKILILMGGRSKERSVSIDSGKACYQAIKKIGYEVYKYDPIKNIKNNIKKINPDIVFNC 63 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG+ GEDG +Q +LE + +PYT SGV AS ++MDK++SK ++ + + + + Sbjct: 64 LHGKYGEDGKIQKILEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFKIIKKIS 123 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKV-VAENALQDALRLAFQHDEEVLI- 179 K K I+KP EGSS+G+ + ++LI Sbjct: 124 DIKNKISKSK---------FILKPINEGSSLGVQIFPEYPTSKNFKKIKKLIKKYKILIQ 174 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY-LSDETQYFCPAGLEASQEANLQ 238 E ++ G E A+LG + + S+ I P FYDY+AKY LS +T++ P + + ++ Sbjct: 175 EPYIEGREIQTAVLGNKAIGSVEIIPKRNFYDYKAKYSLSAKTKHIIPPKIPKRLDNKIK 234 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + L A +L C+G R D + + + Y+LE NT PGMT+ SLVP A+ G+SF++LV Sbjct: 235 RIALIAHKSLKCRGVTRSDFRVMPNNKIYILEINTQPGMTNLSLVPEIAQNFGLSFTELV 294 Query: 299 VRILELAD 306 +++ A Sbjct: 295 DWMIKDAS 302 >UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacillaceae RepID=DDL_LACC3 Length = 357 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 56/347 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------------- 42 KI VL GG S ER VS++SG + LR+ G A +D Sbjct: 2 KIVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANTS 61 Query: 43 ----------KEVDVTQLKSMG---------------FQKVFIALHGRGGEDGTLQGMLE 77 + D+ +L+ G VF+ALHG GE+G +Q + + Sbjct: 62 KDLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVFD 121 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 + G+ YTGSG +AS ++M+K+ SK + G+ + + R D+ + Sbjct: 122 INGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKR--------DQGPKQTVPF 173 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI 197 PV+VKP+ GSSVG + + L+ L F+ D ++E++ G EF++ ++ Sbjct: 174 DFPVVVKPTSGGSSVGTHIIHNQEELESGLEDVFRFDNSAIVEEFTPGREFSLGVVNGHA 233 Query: 198 LPSIRIQPSGTFYDYEAKYLSDETQYFCPA-GLEASQEANLQALVLKAWTTLGCKGWGRI 256 +I I+ +YD++ K+ + T + P L+ ++ + ++ LG + +GRI Sbjct: 234 YSAIEIKVRSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGRI 293 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 D + G +++EAN PGMT SL+P A G+ + LV+ I+ Sbjct: 294 DFFANEKG-VWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIVN 339 >UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacillales RepID=DDL_LEUMM Length = 377 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 51/350 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGG-IDAYP--------------------- 39 ++A++ GG S+E +VS S + G + Sbjct: 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILAL 62 Query: 40 -------------VDPKEVD--VTQLKSMG-FQKVFIALHGRGGEDGTLQGMLELMGLPY 83 VD + + LKS G F F +HG GEDGTLQG+ +L+ PY Sbjct: 63 EDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPY 122 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 G+ + A+S DK +K L G+ ++ + DK +AE+ + V V Sbjct: 123 VGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNI---VFV 179 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILGEEILPSIR 202 K + +GSSVG+S+V +AL +FQ+D +VLIE+ ++G E V ++G + Sbjct: 180 KAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSE 239 Query: 203 I--------QPSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGW 253 I +YDY K++ + +F PA L ++ + L A+ L +G Sbjct: 240 IGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGE 299 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 R+D +LD + YL E NT PG T+ SL + ++ ++LV +++ Sbjct: 300 ARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349 >UniRef50_B0MP08 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MP08_9FIRM Length = 397 Score = 293 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 149/366 (40%), Gaps = 65/366 (17%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-------------V 47 M ++ V GG S E EVS+ S + + + PV + + Sbjct: 1 MKIRVGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASY 60 Query: 48 TQLKSM--------------------------------GFQKVFIALHGRGGEDGTLQGM 75 LKS+ F +HG EDG QG Sbjct: 61 RNLKSLLKESRRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGY 120 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 L+ +G+PY G V++SA+ MDK K +++ G+PV + +++ K + + Sbjct: 121 LQTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKA 180 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILG 194 + P+IVKP GSSVG+ + L +AL AF + ++L+E ++ E ++ G Sbjct: 181 KIAYPLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYASKLLVEPAITNLKEINCSVCG 240 Query: 195 E----EILPSIRIQPSGTFYDYEAKYLSDET----------QYFCPAGLEASQEANLQAL 240 + + Y+ KY++ + + PA + ++ L Sbjct: 241 DYATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTL 300 Query: 241 VLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 +KA+ +LG G RID M+D D G YL E NT PG SL G+ +S+L+ Sbjct: 301 AVKAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLD 356 Query: 300 RILELA 305 ++ LA Sbjct: 357 EMISLA 362 >UniRef50_Q60GK8 D-alanyl-D-alanine ligase n=2 Tax=Streptomyces RepID=Q60GK8_STRLA Length = 345 Score = 293 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 162/348 (46%), Gaps = 52/348 (14%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------------- 42 +I +L GG S ER+VSL SG++V L E G + VDP Sbjct: 2 RIVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAGEPVLAGPLHPGDVVDGFE 61 Query: 43 ---------KEVDVTQLKSMGF------------QKVFIALHGRGGEDGTLQGMLELMGL 81 + + Q + F VF ALHG GEDG +Q LE G+ Sbjct: 62 VGKEPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAAGV 121 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL--GL 139 +TG+G A A + +K R++ + AG+PV T +D+ E+ L Sbjct: 122 RFTGAGSTACAAAWNKERAQAVLAAAGVPV------TERALWPAAADEVPKEVRPLVAAG 175 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILP 199 PV+ KP +GSSV + + + L+ ++L+E +LSG EFTV ++G ++LP Sbjct: 176 PVVAKPVADGSSVSVHRADSLAELERLAPQMRADGGDLLVEPFLSGREFTVGVVGGQVLP 235 Query: 200 SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGC--KGWGRID 257 I I+ S +DY AKY CPA + + LQ L L+A LG + R D Sbjct: 236 VIEIELSTPLFDYAAKYQPGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYSRAD 295 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D+ G+ LE N PG+T+ SL+P+ A AG +++ L RI+ LA Sbjct: 296 FRCDAAGEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLA 343 >UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AVY8_9BACE Length = 398 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 156/366 (42%), Gaps = 66/366 (18%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-------------- 46 M ++A++ GG S E EVS+ SG + D PV + + Sbjct: 6 MKTRVAMMFGGKSVEHEVSVISGIQAYMSMDTDKYDVIPVYMTKNNEMYIGDSIGDIESY 65 Query: 47 -------------------------------VTQLKSMGFQKVFIALHGRGGEDGTLQGM 75 + + +G F +HG EDG QG Sbjct: 66 KNIDELLKKSQRVIMINEDGRVKLVQYPVKKLGKNVEVGIDVAFPVVHGTNVEDGGFQGY 125 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 L+ MG+P+ G V ASA+ MDK +KL+ + + +PV T +++ S E + Sbjct: 126 LKTMGIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDARLYTLSDYADMESMMNDIE-N 184 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILG 194 G PVIVKP GSSVG+S + L +++ AF++ +VL+E ++ E ++LG Sbjct: 185 VFGYPVIVKPVNLGSSVGISVAKSRVELANSVDDAFRYATKVLVEHAITNLREINCSVLG 244 Query: 195 EE----ILPSIRIQPSGTFYDYEAKYLSD----------ETQYFCPAGLEASQEANLQAL 240 +E + YE KY+S+ PA L + ++ L Sbjct: 245 DENDAIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMASVSRRIPAELTPEKREEVREL 304 Query: 241 VLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 ++++ LGC G RID M+D+D + Y E NT PG SL G+ + +L+ Sbjct: 305 AVRSFKALGCNGVSRIDFMIDADTDKLYFNEINTIPG----SLAFYLWEPVGVPYKELLD 360 Query: 300 RILELA 305 R+++LA Sbjct: 361 RMIQLA 366 >UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=A9WQG6_RENSM Length = 365 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 115/331 (34%), Positives = 158/331 (47%), Gaps = 30/331 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSG---AAVLAGLREGGIDAYPVDPKEVDVTQL-------- 50 IAV+ GG S+E +VSL S A A L G + + Sbjct: 33 AKTIAVIGGGVSSEHDVSLASSEGTRAAAAAL---GHRVHFFLIDSDGEWSVDGVPGTTA 89 Query: 51 ---KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGA 107 K +HG GGEDG LQG LE +G+ Y GSGV++SA+ +DK +KL+ Sbjct: 90 AWEKLRSCDLAIPMVHGAGGEDGVLQGFLETVGVSYFGSGVLSSAVGLDKQVTKLVAHTV 149 Query: 108 GLPVAPWVA----LTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENAL 163 G+ AP + L E + L + + + LPV VKP R GSS G+SKV + L Sbjct: 150 GVRTAPGLTIDATLRDQLAETPDQAENLLKSAKIELPVFVKPLRGGSSFGISKVTEQLNL 209 Query: 164 QDALRLAFQH--DEEVLIEKWLSGPEFTVAILGEEILPSIR-------IQPSGTFYDYEA 214 DA++LA +++VLIE + G E V +L I F+ EA Sbjct: 210 ADAVKLAAHGPVEQDVLIEPEVRGKEVDVGVLELPDCSVIVGPCLQVLADSKEEFFSTEA 269 Query: 215 KYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTS 274 KY S ET++ PA + A ++A +T LGC+G R+D +D DG L E NT Sbjct: 270 KYSSTETRFLVPAPIGDEASAAIRAQAKAVFTALGCRGLARVDFFVDDDGTATLNEINTL 329 Query: 275 PGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 PG TSHS VP AG+++ LV I+E A Sbjct: 330 PGFTSHSQVPRIWAAAGVNYEGLVAIIIETA 360 >UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT22_9FIRM Length = 390 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 154/366 (42%), Gaps = 71/366 (19%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV----------DVTQLKSM 53 +AV+ GG S E EVS+ +G V+ L + + P+ + D K Sbjct: 3 NVAVVFGGISVEHEVSVITGLQVIENLDKEQFNPIPIYISKEGRFYSGEMLKDFKTYKEG 62 Query: 54 GF----------------------------------------QKVFIALHGRGGEDGTLQ 73 + +F ALHG GEDG +Q Sbjct: 63 KYREATEVFIIPQKGDRFLYSTKVVGGIFKKTHTENYIYARIDAIFPALHGTFGEDGAIQ 122 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 G+ E M +PY G GV+A A MDK+ K +++ +PV + R+E + S L + Sbjct: 123 GLFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYFYRSELKDLQS--VLKK 180 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL-SGPEFTVAI 192 LG P+IVKP+ GSS+G+SKV L AL +A +D+++++EK L E VA+ Sbjct: 181 CEKLGYPLIVKPANLGSSIGISKVKDTLELTKALEVASNYDKKIIVEKCLTDHREINVAV 240 Query: 193 LGE----EILPSIRIQPSGTFYDYEAKYLSDETQYFC---------PAGLEASQEANLQA 239 LG+ ++ + Y KY+ PA L + Sbjct: 241 LGDQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQKKKLPADLSKEVHNKICQ 300 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 L +++ + G RID +L + + Y+ E NT PG S+ G+SF L+ Sbjct: 301 LAKESFKAIDATGVSRIDFLL-KNDEVYVNEINTLPG----SIAFYLFEVEGLSFKDLLT 355 Query: 300 RILELA 305 ++LE+A Sbjct: 356 KLLEIA 361 >UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q872P6_NEUCR Length = 346 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 100/340 (29%), Positives = 160/340 (47%), Gaps = 39/340 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY---------------------- 38 + IA+++GG S E +VS+++G A+ A + + Y Sbjct: 5 IKKNIAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDNDKQI 64 Query: 39 PVDPKEVDVT--QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMD 96 PVD + VT + + F +I++HG GE+G LQG +++GLPYT G SAL+ + Sbjct: 65 PVDRNDFSVTLSTGEKIQFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYTSALTAN 124 Query: 97 KLRSKLLWQGAG-LPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 155 K + + G + VA L R + + L E LPV VKP+ GSSV + Sbjct: 125 KGHCNPVVRSFGVVEVAKSRLLHRNQISALDPEALLFE---FDLPVFVKPASGGSSVATT 181 Query: 156 KVVAENALQDALRLAFQHD--EEVLIEKWLSGPEFTVAILGE-----EILPSIRIQPSG- 207 KV + + A+ A + D +VL+E+++ G EF ++ + + P + P G Sbjct: 182 KVKSIEQVVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRDAEGWLHVFPITEVIPHGD 241 Query: 208 -TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQ 265 ++DY AKY + + PA +E ++ + L C+G R D + + Sbjct: 242 SEYFDYNAKY-NGSSSKVTPAEVETQVSDRIKDTSTMLYDLLDCRGVVRFDYRYNPELYA 300 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 Y LE NT PG T S+VP AR AG+S + L ++E A Sbjct: 301 LYFLEVNTIPGQTPESIVPQQARAAGISTADLYHMVIECA 340 >UniRef50_B1JC77 D-alanine--D-alanine ligase n=2 Tax=Pseudomonas putida RepID=B1JC77_PSEPW Length = 304 Score = 290 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 163/304 (53%), Gaps = 12/304 (3%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLR--EGGIDAYPVDPKEVDVTQLKSMGFQKV 58 M + IA++ GG S+EREVSL + AV L + + + + ++ +L F +V Sbjct: 1 MNEYIAIITGGDSSEREVSLQTSQAVSQSLEISQIRHEIFTIS-DYRELLRLDLAKFTRV 59 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F+ALHG GE+G Q LE G+PY G SA+ M+KL +K + G G+ VA ++ Sbjct: 60 FLALHGGFGENGMAQAYLEGQGIPYNGPSPQTSAICMNKLLTKHIAMGLGINVANYLYSR 119 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA-ENALQDALRLAFQHDEEV 177 R + L +++ E LG P IVKP+REG S G+S V E LQDA+ A Q V Sbjct: 120 RGD---DLCVEKINE--QLGTPCIVKPNREGCSFGVSLVRDLETDLQDAINAAAQFHTGV 174 Query: 178 LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 L+E+++SGPE +V + LP + F+ YEAK++S +T L+ + L Sbjct: 175 LVEEFISGPELSVCYFNKATLPIYSLAFESEFFSYEAKFISSKTTATL-TTLDRTTHQQL 233 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 L + R D ++ + + YL+E NT PG+TSHSL P A +Q G+ F +L Sbjct: 234 NNYCFAIAEALEL-DYFRADFII-HNTEPYLIELNTLPGLTSHSLFPKACQQHGIEFDKL 291 Query: 298 VVRI 301 V+ + Sbjct: 292 VLLL 295 >UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma whipplei RepID=DDL_TROWT Length = 347 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 150/347 (43%), Gaps = 51/347 (14%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------DPKEVDVTQL 50 ++ +L GG S E VS S A+L + + PV E D ++ Sbjct: 2 RRLLLLFGGRSQEHSVSYASARALLEHICDE-WTVIPVGITKHGDFVYCSTVSEQDYGEV 60 Query: 51 KSMG---------------------------FQKVFIALHGRGGEDGTLQGMLELMGLPY 83 G F VF LHG GEDGT+QGML+L+ +PY Sbjct: 61 IDNGNRVVWPSRAGCKKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLDIPY 120 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 GSGV ASA +MDK +K+L AG+PV PW + + K P+ V Sbjct: 121 VGSGVFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSFLKQISDRFTFPLFV 180 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-ILPSIR 202 KP GSS G + V L A+ A QH + ++E L PE +++ +L Sbjct: 181 KPVDAGSSFGCTFVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIENNGVLQCSE 240 Query: 203 IQ----PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 + FYDY AKYL+ ++ PA + + K + LGC+ + RID Sbjct: 241 LVFVKHSGSKFYDYSAKYLNP-VEFVIPAQFDN--TDGYAEIASKVFFELGCRHYARIDF 297 Query: 259 MLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + G L E NTSPG+T S+ P + + M +SQ++ IL A Sbjct: 298 FVTESG-LVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASA 341 >UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0A6_ERYRH Length = 338 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 94/344 (27%), Positives = 157/344 (45%), Gaps = 50/344 (14%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------- 40 M ++A++ G ++E ++S+ S A+VL + D P+ Sbjct: 1 MNKLQVALVFGSINSEHDISVASAASVLEHFPKEKFDCVPLYIGKDGKWYTGNYTLDMMQ 60 Query: 41 -----------------DPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPY 83 P + + F+ LHGR GE G +QG+L+ +P+ Sbjct: 61 SNKLEGHRELYLQFNYDRPGFIYADDQSLLPVDVAFLMLHGRMGEGGQVQGLLKCANIPF 120 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 TG V++SAL MDK + ++ + AG+ +A + +T + + P IV Sbjct: 121 TGCDVLSSALCMDKGFTHIICEAAGIDMAAYQLITH---------INDIDFEKVEYPCIV 171 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILP 199 KPSREGSS G+S V + L +A AF+ D VLIE ++ G E + IL + + Sbjct: 172 KPSREGSSFGVSYVRNYDELLNACLFAFEFDSRVLIEAYIKGTEVGLGILKTDQELIVSE 231 Query: 200 SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 ++ SG +D++ KY T+ + S +Q L A+ L C + R+D Sbjct: 232 VDQVNVSGEVFDFQEKYHPHATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFSRLDFF 291 Query: 260 LDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 + D + +L E NT PG TS S P +AG+S+ +L+ +++E Sbjct: 292 VTEDHRIFLNEVNTIPGFTSSSRYPGMLDRAGVSYPELITKMIE 335 >UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=DDL_PORG3 Length = 330 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 95/328 (28%), Positives = 155/328 (47%), Gaps = 30/328 (9%) Query: 1 MTDKI-AVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------------PV 40 M I AV+ GG S E VSL S A +L+ L A+ P+ Sbjct: 1 MKKPIVAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPL 60 Query: 41 DPKEVDVT-QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 D + + + F +I +HG GE+G LQG L+++G+PY + +L+ +K Sbjct: 61 DKNDFSFDLDDERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYV 120 Query: 100 SKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA 159 G G+ +A + LT + + ++D + +GLP+ VKP+ GSS+ +KVV Sbjct: 121 CNRFLSGFGIRIADSMRLTGRDTQPDVADL----TARMGLPLFVKPNVGGSSIATTKVVE 176 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAK 215 L A+ AF EEV+IE+ + G E T + LP + F+D++AK Sbjct: 177 AAQLLPAIGQAFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEVVAHNEFFDFDAK 236 Query: 216 YLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSP 275 Y + + PA + +Q + + + L +G R+D ++++DG LLE NT+P Sbjct: 237 Y-NGAVEEITPARISDEATRLIQTMTARIYELLNARGIIRVDYIIEADGIPTLLEVNTTP 295 Query: 276 GMTSHSLVPMAARQAGMSFSQLVVRILE 303 GMT S +P R A M +++ I+ Sbjct: 296 GMTPTSFIPQQVRAAEMDMKEVLCTIIR 323 >UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AC0 Length = 357 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 101/351 (28%), Positives = 161/351 (45%), Gaps = 48/351 (13%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV-------------DPKEVD 46 M K AV+ GGTS E ++SL S A V+ + E + + D +++ Sbjct: 1 MAKIKAAVIFGGTSREHKLSLASAAEVIRNIPEDKYEVICIGITRKGRWLYFPGDVEDIP 60 Query: 47 VTQLKS----------------------------MGFQKVFIALHGRGGEDGTLQGMLEL 78 + + VF + G+ G DGT+QG+L+L Sbjct: 61 TGEWEQDPDCTSAIISPDPLHRGIILIENGEAVVRKIDVVFPVVMGKHGADGTIQGLLDL 120 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA-L 137 G+PY G GV+A+A MDK ++ + A W +T+ E + DK+ EI+ L Sbjct: 121 SGIPYVGCGVLAAASCMDKSHIHMVMDDYDIATADWRIITQREISE--IDKRCHEIAGEL 178 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEI 197 G P+IVKP++ G+S G K L A+++AF +D +V++EK++SG + A+ G + Sbjct: 179 GFPLIVKPAKSGTSAGTGKADDLAQLIAAVKVAFSNDNKVVVEKYVSGRKMEAAVFGYDT 238 Query: 198 LPSI---RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 S I YD S PA + +A+++ +KA+ +GCKG Sbjct: 239 PFSTYIGEILDPDRVYDPTEVNQSTGDGLKIPADISDELQASIRETAVKAYKAMGCKGLA 298 Query: 255 RIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D L DG+ L + TSPG+ +S+ P G+S V +LE A Sbjct: 299 RLDFFLTDDGRLLLNKIGTSPGLRKNSVFPKLMEHMGISHEDFVDMLLEQA 349 >UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT Length = 332 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 100/330 (30%), Positives = 160/330 (48%), Gaps = 34/330 (10%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD--------------- 46 IA++ GG S+E +VS+ SG + + + + Y VD K +D Sbjct: 5 KRTIAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDK 64 Query: 47 -----VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 V + + F +I +HG+ GE+G +QG +L+ +PY+ GV+ AL+ DK Sbjct: 65 NDFSFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQIPYSTGGVLVEALTFDKYVLN 124 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN 161 +G G+ VA + L R E + LG+P VKP+ +GSS G+SKV + Sbjct: 125 NYLRGFGIKVADSILLRRGEEYD-----EAEIEKRLGMPCFVKPAADGSSFGVSKVKNID 179 Query: 162 ALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYL 217 L ALR+AF +EV+IE ++ G E + + + + P+ + S F+DY AKY Sbjct: 180 QLAPALRVAFMQSDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEVVTSNEFFDYNAKY- 238 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML--DSDGQ--FYLLEANT 273 + + + PA + + A + L G RID ++ D DG+ +LE NT Sbjct: 239 NGQVEEITPARMSDETAKRVAAETSCIYDILHANGIIRIDYIISKDKDGKDVINMLEINT 298 Query: 274 SPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 +PGMT S +P R AG+ ++ I+E Sbjct: 299 TPGMTVTSFIPQQVRAAGLDIKNVLSDIVE 328 >UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho melanesiensis BI429 RepID=DDL_THEM4 Length = 361 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 87/346 (25%), Positives = 156/346 (45%), Gaps = 58/346 (16%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV----------------DV 47 I + G S E E+S+ + VL+ + + P+ + D Sbjct: 3 NIGIFFGSKSVEHEISIITAQQVLSSIDRKKYNVIPIYISKSGEWFTGKVLEDLETFKDF 62 Query: 48 TQLKSMG-----------------------FQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 +L+ F+ HG GEDGT QGM E+ G+PY+ Sbjct: 63 DKLEKKAKKIDSFSVKNNKLLLKYGLKKQTIDFCFLVFHGTNGEDGTFQGMCEIFGIPYS 122 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA-LGLPVIV 143 G +SA +MDK+ +KLL + + V + E+ ++++ LG P+IV Sbjct: 123 GCNHFSSAFTMDKVVTKLLLKEKEISVVDF------EYTTEINEEFFKRCEKNLGYPMIV 176 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI-- 201 KP+R GSS+G+SKVV ++A++ D +VL+EKW++ E A++G + + Sbjct: 177 KPARLGSSIGVSKVVDRKNFEEAVKNVLLFDNKVLVEKWINAREINCAVMGYKNIFVSEL 236 Query: 202 -RIQPSGTFYDYEAKYLSDE---TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 I F+++E KY + + PA ++ + + ++ + + L C G RID Sbjct: 237 EEINKKNDFFNFEEKYFKKGKKFSNHIIPARIDENLKNKIKEIAKDTFKILECSGNVRID 296 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 ++ + Y+ E NT PG +L +++G +FSQ++ ++ Sbjct: 297 FLI--ADKIYVNEINTIPG----ALSFYIWQKSGFTFSQIIDNMIN 336 >UniRef50_C5C6M9 D-alanine--D-alanine ligase n=4 Tax=Actinomycetales RepID=C5C6M9_BEUC1 Length = 313 Score = 281 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 161/310 (51%), Gaps = 5/310 (1%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M+ + VL GG S ER+VSL SG V LR+ G+ A D + L V+ Sbjct: 1 MSFDVLVLAGGLSHERDVSLRSGRRVAEALRDAGVSAAVRDVDADLLAYLDDARPDVVWP 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GEDG+++ +LEL+G+ G+G S ++ K +K + AG+ L ++ Sbjct: 61 LLHGSTGEDGSIRDLLELVGVRAVGTGSAGSRIAWAKPVAKTVLARAGVATPASATLPQS 120 Query: 121 EF-EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 F E G + LGLP++VKP+ GS++G+S V + AL A+ F + + LI Sbjct: 121 LFRELGPHAVLGRVLDRLGLPLVVKPASGGSALGVSLVTSAEALPQAMVSCFSYGDVALI 180 Query: 180 EKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+ ++G E V+++ G LP + I YD++A+Y + T+YF PA L A A Sbjct: 181 EQAVTGTEVAVSVVDLGDGPVALPPVEIVVDDGPYDFDARYNAGRTEYFTPARLPADHLA 240 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 A+ ++A L + R D+++D G + LE N +PGMT SL P+AA + Sbjct: 241 AACAVAVRAHDVLRLRHLSRTDLVVDGYGVAWFLEVNVAPGMTETSLFPLAAAASPTPLP 300 Query: 296 QLVVRILELA 305 +L + ++A Sbjct: 301 ELYRGLADVA 310 >UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SQZ6_PSYIN Length = 380 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 96/356 (26%), Positives = 158/356 (44%), Gaps = 57/356 (16%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK------------------ 43 K+AV+ GG S E +VS+ S +LA + P K Sbjct: 5 RMKVAVVFGGKSTEHDVSIISAGHILANIDMEKYFVEPFYVKKDGTFADHQELTLCLENL 64 Query: 44 ---------------EVDVTQLKSMG-------------FQKVFIALHGRGGEDGTLQGM 75 E+++ + + G F VF LHG GEDGT+QGM Sbjct: 65 LNEHRDKIFPAMKEGEIELKKWIAKGTSSDFLGGIAGKKFDIVFPVLHGLNGEDGTIQGM 124 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 LE MG+PY G GV ASA +DK +K++ Q +PV + A+ + E+E + Sbjct: 125 LEFMGVPYVGCGVSASAFCIDKEATKVICQVNDIPVMDYTAVKKYEWENSTENIINDIQK 184 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS-GPEFTVAILG 194 + P VKP+R GSS+G+S+ L+ +L+ AF++D +V++E+ + E TV ++G Sbjct: 185 KMNYPFYVKPARLGSSIGISRAENTVELKTSLKDAFKYDCKVVVEQGVESPRELTVGVMG 244 Query: 195 EEILPSIRIQPSGTF-------YDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTT 247 I + + G F +++++KY + PA LE + + ++ + Sbjct: 245 --IDDQVSLSAIGEFSRGSNLYFNFDSKYGKTGHKGLVPAPLEENIQEIIEKYSHLIFKK 302 Query: 248 LGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 G+ RID L D + YL E NT PG + + G+ + + + +E Sbjct: 303 FELSGFARIDYFLCGD-KVYLNEINTMPGFETGDTFMRIWQNKGVDMQKFIDKAIE 357 >UniRef50_D2MND8 D-ala D-ala ligase N-terminal domain protein n=2 Tax=Erysipelotrichaceae RepID=D2MND8_9FIRM Length = 394 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 90/367 (24%), Positives = 157/367 (42%), Gaps = 67/367 (18%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP--------------------- 39 M ++ V GG S E EVS+ S + L + + P Sbjct: 1 MKLRVGVFFGGESVEHEVSIISAQQAIHALDKDKYEVIPLYVAKDRKIYYNPEKFFSVEN 60 Query: 40 ------------------------VDPKEVDVTQLKSMG-FQKVFIALHGRGGEDGTLQG 74 + P + + Q K++G +HG GEDGT+QG Sbjct: 61 FTNLPALLKESIQVTLVNLGNECAIRPVHIGLFQKKTLGTIDLAIPVMHGTNGEDGTIQG 120 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 + E++ +P+ G + + + DK+ K + LP+ PW + + E + + L ++ Sbjct: 121 LFEMLKIPFAGCDIYGAVIGQDKVFQKHILHDNHLPITPWFWVYGQDIETYQT-QILEKV 179 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAIL 193 ++LG PVI+KP+R GSS+G+S D + A ++DE+++ EK + E +++ Sbjct: 180 NSLGYPVILKPARTGSSIGISIAHDNEEYLDCFKDAMRYDEKIITEKVIKPMREINCSVI 239 Query: 194 GEEILPSIRI-----QPSGTFYDYEAKYLS---------DETQYFCPAGLEASQEANLQA 239 G+ + Q D++ KY S T PA L + +Q Sbjct: 240 GDHTGSRASVLEEVTQQEKELLDFDKKYGSGGSKGKSGMAATSRQVPAPLSHEETKYIQQ 299 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 L + LG G RID ++D++ + Y+ E NT PG SL ++ G+ FS+L+ Sbjct: 300 LAKDTFRVLGSAGVCRIDFIMDAETKKIYINEINTIPG----SLAFYLWKEEGVDFSKLM 355 Query: 299 VRILELA 305 +++ LA Sbjct: 356 NQLITLA 362 >UniRef50_C0BG03 D-alanine--D-alanine ligase n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BG03_9BACT Length = 328 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 89/325 (27%), Positives = 148/325 (45%), Gaps = 31/325 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG------- 54 K+ V+ GG ++E ++SL SG V L + + + + G Sbjct: 4 KKKLGVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITINSNEWVANDDNGNHYSVSK 63 Query: 55 -------------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 +F ++HG GE+G L + EL+ +P++ SAL+ +K Sbjct: 64 GDFTLQIGNDIVFLDVIFNSIHGAPGENGQLAALWELLNIPFSSCDSYTSALTYNKRDCL 123 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN 161 + + +P A ++ R + + A+G P VK +R GSS G+ KV ++ Sbjct: 124 SVLREINIPTAKHFSIDRNDKIDLEKIE-----KAVGFPCFVKANRAGSSFGVFKVKKKS 178 Query: 162 ALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL---GE-EILPSIRIQPSGTFYDYEAKYL 217 L+ AL+ AFQ D +V+IE L G E +V + G+ ++LP I F+DY AKY Sbjct: 179 NLEQALQKAFQEDSQVIIESALEGREVSVGVAKLRGDIKVLPVTEIITENEFFDYAAKY- 237 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 ++Q PA + + ++ + + LG KG R + + DG +LLE NT PG Sbjct: 238 EGKSQEITPAQIPIEWKEEVEKRSKEIYHKLGLKGVVRSEFIF-VDGVPHLLEINTVPGF 296 Query: 278 TSHSLVPMAARQAGMSFSQLVVRIL 302 T S++P A G+ S+ +L Sbjct: 297 TQKSIIPQQALAMGIELSEFFNLLL 321 >UniRef50_Q821S4 D-alanine--D-alanine ligase n=15 Tax=Chlamydiaceae RepID=MUDD_CHLCV Length = 811 Score = 279 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 98/331 (29%), Positives = 145/331 (43%), Gaps = 33/331 (9%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA-YPV-----------------DPKEVD 46 + V+ GG S E +VSL S V+ L D Y V D + Sbjct: 454 VGVVCGGQSCEHDVSLLSARNVVQYLSPQHYDVQYFVINRQGLWSQVANLDAGSDYNSKN 513 Query: 47 VTQLKS------MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 L S V LHG GEDGTLQG LE+ PY G ++ SA+SMDK+ + Sbjct: 514 YHVLSSKIAEALANLDFVLPILHGPFGEDGTLQGFLEIANKPYGGPSLLFSAISMDKIMT 573 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 K L G+PV P+ LT +++ + P+ VK + GSS+G+ +V E Sbjct: 574 KRLAASVGVPVVPYQPLTLPTWKRTPELCMRRILETFTFPMFVKTAHLGSSIGVFEVHNE 633 Query: 161 NALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILGEEILPSIRIQPSG-----TFYDYEA 214 L+ + AF +D +V IE+ G E V+ LG+ +P F YE Sbjct: 634 TELKAKISEAFLYDTDVFIEESRLGSREIEVSCLGDACSCYYISEPHERRGSKGFIGYEE 693 Query: 215 KY-LSDETQYFC--PAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEA 271 KY + ++ L + ++ L + + + KG RID LD +G F+L E Sbjct: 694 KYGFNGKSSATIQYDLNLSEESKTRVKELTERVYRVIQGKGSCRIDFFLDREGNFWLSEM 753 Query: 272 NTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 N PGMT S + G +F Q+V +++ Sbjct: 754 NPIPGMTKSSPFLHDFARLGWTFEQIVHQLI 784 >UniRef50_B0RDP5 D-alanine--D-alanine ligase B n=4 Tax=Actinobacteria (class) RepID=B0RDP5_CLAMS Length = 321 Score = 279 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 156/306 (50%), Gaps = 5/306 (1%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 + VL GG S ER+VSL SG V+ LR G+ A DP + L+ V+ LHG Sbjct: 9 VLVLAGGISHERDVSLRSGRRVVDALRGAGVVASLRDPDATLLDFLRETPPAVVWPVLHG 68 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF-E 123 GEDG L G+LEL G+PY GS A+ L+ DK +K + G+ V L + F E Sbjct: 69 ASGEDGALLGLLELAGVPYVGSSARAARLAWDKPTAKAIAGTVGIRTPRSVTLPKDTFRE 128 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 G + A+ P VKP+R GS+ G++ V +AL A+ A+ + + LIE+ + Sbjct: 129 LGAAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVRDADALPRAMVDAYTYGDVALIEQLI 188 Query: 184 SGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 G E + ++ G E LP+ I P+ Y YEA+Y + T+++ PA + + A Sbjct: 189 EGTEVAIGVIDTGAGPEALPATEIVPTSGVYGYEARYNAGLTRFYTPARISPEEAAAAST 248 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + LG R+D+++D+ G+ + LE N PG+T SL+P AG+ L Sbjct: 249 AAVGIHRALGIGQMSRVDIIIDAAGEPWFLEVNVIPGLTETSLLPQGLAAAGIEVGDLYR 308 Query: 300 RILELA 305 R+ E A Sbjct: 309 RLAEAA 314 >UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteobacteria RepID=DDL_VIBC3 Length = 329 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 101/329 (30%), Positives = 144/329 (43%), Gaps = 30/329 (9%) Query: 1 MTDK-IAVLLGGTSAEREVSLNSGAAVLAGLR-------------------EGGIDAYPV 40 MT I +L GG S+E E+SL S + L E G Y Sbjct: 1 MTKTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLD 60 Query: 41 DPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 + S V +HG GE G +Q MLEL G+PY G G ASA S +K+ S Sbjct: 61 TNSATLNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITS 120 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 KL + +P P++ LT+ DK G + VK +R+GSSVG KV E Sbjct: 121 KLWYDALDIPNTPYLFLTQNT--PSSIDKAKQAFGHWGS-IFVKAARQGSSVGCYKVTTE 177 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVAI--LGEEIL---PSIRIQPSGTFYDYEAK 215 + + A+ AF E+VL+E+ + E V+ + ++ P I P GTFY YE K Sbjct: 178 DQIAPAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEK 237 Query: 216 YLSDETQYFC--PAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANT 273 Y ++ L + +Q + + + + RID L +GQ YL E NT Sbjct: 238 YSANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQEGQIYLNEVNT 297 Query: 274 SPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 PGMT S+ P G FS+ + + + Sbjct: 298 FPGMTPISMFPKMLEHNGHRFSEFLAQCV 326 >UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermaceae RepID=Q2S0H9_SALRD Length = 434 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 96/382 (25%), Positives = 159/382 (41%), Gaps = 85/382 (22%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV----------------DVT 48 + ++LGG + E EVS+ + A L P+ + D+ Sbjct: 24 VGIVLGGVAPEHEVSVITALQAAAALDRDRYTPVPIYVAKDGTWYTGDALLEVEAYRDLD 83 Query: 49 QLKSMG-----------------------------------FQKVFIALHGRGGEDGTLQ 73 L+ + + LHG GE+G +Q Sbjct: 84 ALREDALPVALAPTPYGHLELLEDRAPGILKRLQRPALRRRIDVMLLGLHGGPGENGGVQ 143 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 G+ E +PYT +GV SAL MDK+ SK + + AG+PV +VAL E+ + Sbjct: 144 GLCETFNVPYTSAGVFGSALGMDKVMSKRVCRQAGIPVVDFVALREGEWAGREAAALDEC 203 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAI 192 + L P++VKP+R GSS+G+++V L A+ A ++D++V++EK + E ++ Sbjct: 204 EATLDYPLVVKPARCGSSIGIAQVNTRAELDAAIEDALRYDDKVVVEKAVEALREINCSV 263 Query: 193 LGE--EILPSIRIQP----SGTFYDYEAKYLSDETQ----------------------YF 224 LG+ E PS+ +P ++ KY+ ++ + Sbjct: 264 LGDGHEATPSVLEEPVPSDDDAVLTFQDKYMREDGEAAKAEGGTKSAESSPEGMAAQDRI 323 Query: 225 CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLV 283 PA L + +Q L ++ + C G RID M+D G+ Y E NT PG S Sbjct: 324 VPANLSDERTETIQDLAVRIFHQFECAGVVRIDFMIDESTGRVYFNEINTIPG----SFS 379 Query: 284 PMAARQAGMSFSQLVVRILELA 305 +G+SF LV R++ +A Sbjct: 380 FYLWEPSGVSFDALVDRLVTIA 401 >UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae RepID=DDL_VIBVY Length = 331 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 96/331 (29%), Positives = 144/331 (43%), Gaps = 31/331 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGA------------AVLA-GLREGGI-----DAYPVDP 42 M + +L GG S+E E+SL S VL ++ G +D Sbjct: 1 MMRNVLLLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDI 60 Query: 43 KEVDVTQLK---SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 V + S+ + +HG GE G +Q + EL G+PY G G AS+ S +K+ Sbjct: 61 HTKSVKSDEFNESIDIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKIT 120 Query: 100 SKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA 159 SKL + G+P P++ LT E ++ + + VK +R+GSSVG V Sbjct: 121 SKLWYDAIGIPNTPYLFLTENNEESHQLSREAFDKWG---KLFVKAARQGSSVGCYSVTN 177 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAI--LGEEIL---PSIRIQPSGTFYDYEA 214 L DA+ AF +VL+EK + E V+ + ++ P I P G FY Y+ Sbjct: 178 IEQLSDAIDKAFGFSHQVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDE 237 Query: 215 KYLSDE--TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEAN 272 KY + L Q A +Q K + + + RID L S+G+ YL E N Sbjct: 238 KYSAGSHSITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLTSEGEIYLNEVN 297 Query: 273 TSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 T PGMT S+ P + G F + + +E Sbjct: 298 TFPGMTKISMFPKMLQHNGHKFHEFLADCIE 328 >UniRef50_C0VTV5 D-alanyl-alanine synthetase A n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VTV5_9CORY Length = 315 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 88/259 (33%), Positives = 132/259 (50%), Gaps = 19/259 (7%) Query: 56 QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWV 115 +F LHG GEDGT+QG+ EL G+PY G+GV+ASA MDK +K L + AGLP+ + Sbjct: 61 DVIFPVLHGLNGEDGTIQGLFELSGVPYVGNGVLASACGMDKQYTKKLCKLAGLPIGKDL 120 Query: 116 ALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE 175 L E L PV VKP+R GSS+G+S+V + + +A+RLA + D Sbjct: 121 VLEGGEE---------FIPGTLNFPVYVKPARGGSSIGISRVEDVSGIDEAIRLARESDP 171 Query: 176 EVLIEKWLSGPEFTVAILGEEILPSIRIQP---------SGTFYDYEAKYLSDETQYFCP 226 +V+IE+ + G E +L + P FYD+ AKYL + P Sbjct: 172 KVIIEEEIKGIEVECGVLEYPDGRVVAAAPAELIGTEDGEAGFYDFSAKYLDGQVSAHIP 231 Query: 227 AGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMA 286 A L + A ++ + ++ + L C G R+D + G + E NT PG T S+ P Sbjct: 232 ARLSEEETARVKEIAVQTFKALNCNGLARVDFFVTEHG-PVINEINTLPGFTPISMYPQV 290 Query: 287 ARQAGMSFSQLVVRILELA 305 + G+S+ L+ ++E A Sbjct: 291 FQAEGISYGDLLHILIEQA 309 >UniRef50_C8W9G2 D-alanine--D-alanine ligase n=2 Tax=Atopobium RepID=C8W9G2_ATOPD Length = 333 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 103/329 (31%), Positives = 162/329 (49%), Gaps = 25/329 (7%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M K+AV++GG S ER SL SGA V L + G + P+D V L++ F+ Sbjct: 1 MATKVAVIMGGASFERNFSLKSGALVSEALEKCGYEVLPLDADAHLVDTLRAEKPDVAFV 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGA------GLPVAPW 114 LHG GGEDG + +LE + +PY GS + + +K + + A + P Sbjct: 61 CLHGAGGEDGAVPALLEFLKIPYVGSRPASCRAAWNKADMPFIVRQAWSKEESEVIWPPQ 120 Query: 115 VALTRAEFEKGLSDKQLAEIS-----ALGLPVIVKPSREGSSVGMSKVVAENALQDALRL 169 + LT + F+ + L + +G P+ VKP GS++G+SKV + + L AL Sbjct: 121 IVLTASAFKDLGAAAALDMVPERLGGGVGFPLAVKPVHGGSAMGLSKVDSADQLGKALLG 180 Query: 170 AFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFC 225 A D+ V+I++W+ G E +V +L GE+ LP + I YD +A+ + ++FC Sbjct: 181 ALGFDDSVIIQQWVDGVEVSVTVLSDADGEKTLPPVEISVIKGIYDTDARLDPERIEHFC 240 Query: 226 P------AGLEAS---QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 P A L A L+ L+ +T GC+ RID + D ++ T PG Sbjct: 241 PVRSESLAALGADPVAAREALERAALEVFTAYGCRDLARIDFIWDGH-HVMVMGLKTFPG 299 Query: 277 MTSHSLVPMAARQAGMSFSQLVVRILELA 305 +T SLVPMA AG + ++ +++E A Sbjct: 300 LTETSLVPMAIEAAGYAVEDVLAQLVEGA 328 >UniRef50_A1SMF1 D-alanine--D-alanine ligase n=1 Tax=Nocardioides sp. JS614 RepID=A1SMF1_NOCSJ Length = 311 Score = 266 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 144/319 (45%), Gaps = 30/319 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGF----- 55 M ++AV+ GG S E +VSL S AAV AGL D + + Sbjct: 1 MRTRVAVVGGGRSCEHDVSLASAAAVAAGLDPHRYDVVRLTIGRDGAWRDGDRPVGLAAA 60 Query: 56 -------QKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAG 108 VF HG GEDGTL + EL G+PY GSGV A AL+MDK +KL+ G Sbjct: 61 VEVLRRCDVVFPVAHGPHGEDGTLAALCELAGVPYVGSGVRAGALAMDKWATKLVAAALG 120 Query: 109 LPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALR 168 + A +T A PV+VKP GSS+G++ V +L AL Sbjct: 121 IATAAGRLVT----------AATATQETWTGPVVVKPVAAGSSIGVAFVSEPASLPPALA 170 Query: 169 LAFQHDEEVLIEKWLSGPEFTVAILGEE-----ILPSIRIQPSGTFYDYEAKYLSDETQY 223 A D+ L+E+ ++G E VA+L P + I G F D++AKY + Sbjct: 171 TALALDDRALVEELVTGREIDVAVLRRADGAVVASPPLEIVADGLF-DFDAKY-GGRADF 228 Query: 224 FCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLV 283 PA L+ L+ + + LGC G R+D L G L E NT PGMT HS V Sbjct: 229 RVPAVLDEVDAKALEGAAVATYDALGCSGVARVDFFLTDTG-PVLNEVNTVPGMTEHSQV 287 Query: 284 PMAARQAGMSFSQLVVRIL 302 P AG+ + L+ ++ Sbjct: 288 PRMFAAAGLPYPDLLDELV 306 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacte... 408 e-112 UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria Re... 399 e-110 UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria Rep... 392 e-108 UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria Re... 387 e-106 UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromon... 385 e-106 UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria Re... 383 e-105 UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia ... 381 e-104 UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine s... 380 e-104 UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidami... 379 e-104 UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteri... 379 e-104 UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacte... 376 e-103 UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella... 374 e-102 UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2... 374 e-102 UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia R... 374 e-102 UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 373 e-102 UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteob... 372 e-102 UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia R... 372 e-102 UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobact... 371 e-101 UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas... 370 e-101 UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobaci... 369 e-101 UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteo... 369 e-101 UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus S... 368 e-100 UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=... 368 e-100 UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales... 367 e-100 UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermoth... 366 e-100 UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacter... 366 e-100 UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteob... 366 e-100 UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria Rep... 366 e-100 UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=... 366 e-100 UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteob... 366 e-100 UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillu... 362 7e-99 UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aph... 362 7e-99 UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella ... 362 8e-99 UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular or... 362 9e-99 UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteob... 361 2e-98 UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n... 360 2e-98 UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Ta... 360 3e-98 UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteob... 360 3e-98 UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacte... 359 6e-98 UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci R... 359 6e-98 UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum... 358 1e-97 UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ell... 358 1e-97 UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces ... 358 1e-97 UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine syn... 358 1e-97 UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacil... 358 2e-97 UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas ... 357 2e-97 UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales ... 357 2e-97 UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivib... 357 3e-97 UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi ... 357 3e-97 UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium oc... 356 6e-97 UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteri... 356 6e-97 UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Te... 356 6e-97 UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae... 356 7e-97 UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepI... 355 9e-97 UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachl... 355 1e-96 UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae Re... 353 3e-96 UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus... 353 3e-96 UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycet... 353 3e-96 UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacter... 353 4e-96 UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 353 6e-96 UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizo... 353 6e-96 UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio... 352 7e-96 UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter ... 351 1e-95 UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidip... 351 2e-95 UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine syn... 351 2e-95 UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales R... 351 2e-95 UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aph... 350 3e-95 UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular or... 349 7e-95 UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcu... 349 8e-95 UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonel... 349 9e-95 UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bron... 348 9e-95 UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacter... 348 2e-94 UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C... 347 3e-94 UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 347 3e-94 UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 346 5e-94 UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aerom... 346 5e-94 UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacte... 346 5e-94 UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4... 346 8e-94 UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes R... 345 8e-94 UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clost... 345 8e-94 UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetell... 345 1e-93 UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerof... 345 1e-93 UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria ... 345 1e-93 UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacte... 345 1e-93 UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium Rep... 345 1e-93 UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerot... 343 4e-93 UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteob... 343 6e-93 UniRef50_A6CDT2 D-alanine--D-alanine ligase n=1 Tax=Planctomyces... 342 7e-93 UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibr... 342 8e-93 UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli Re... 342 9e-93 UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibri... 341 1e-92 UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria Rep... 341 1e-92 UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 341 2e-92 UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=... 341 2e-92 UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus... 341 2e-92 UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia ... 340 3e-92 UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrob... 340 4e-92 UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium c... 340 5e-92 UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora ... 340 5e-92 UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomona... 339 6e-92 UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes R... 339 8e-92 UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospor... 338 1e-91 UniRef50_UPI0001AF4ABE D-alanine--D-alanine ligase n=1 Tax=Salmo... 338 1e-91 UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncu... 337 2e-91 UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular o... 337 2e-91 UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetal... 337 2e-91 UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria R... 337 3e-91 UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methyl... 336 5e-91 UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 T... 336 8e-91 UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcale... 335 2e-90 UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bactero... 335 2e-90 UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria Re... 335 2e-90 UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN 334 2e-90 UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus P... 334 3e-90 UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycet... 333 3e-90 UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium ... 333 4e-90 UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecali... 333 4e-90 UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrob... 333 5e-90 UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema Re... 333 6e-90 UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogace... 333 7e-90 UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus... 332 7e-90 UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID... 332 7e-90 UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteo... 332 8e-90 UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteo... 332 9e-90 UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiale... 332 1e-89 UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacter... 332 1e-89 UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga ole... 331 1e-89 UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacill... 331 2e-89 UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfov... 331 2e-89 UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovi... 330 3e-89 UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella R... 330 5e-89 UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax... 330 6e-89 UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteob... 330 6e-89 UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella... 329 8e-89 UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevib... 329 9e-89 UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister in... 329 1e-88 UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsiea... 328 1e-88 UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified... 328 1e-88 UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizob... 328 2e-88 UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pa... 328 2e-88 UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdema... 327 2e-88 UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteob... 327 3e-88 UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacil... 326 4e-88 UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium... 326 4e-88 UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermob... 326 5e-88 UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirill... 326 6e-88 UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp... 325 9e-88 UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundu... 325 1e-87 UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera ... 324 2e-87 UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria Rep... 324 3e-87 UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobact... 323 4e-87 UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root Re... 323 4e-87 UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis v... 323 5e-87 UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacter... 323 6e-87 UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacill... 323 7e-87 UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiace... 323 7e-87 UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiace... 322 1e-86 UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirill... 321 2e-86 UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacte... 321 2e-86 UniRef50_C3WFS8 D-alanine-D-alanine ligase n=6 Tax=Fusobacterium... 321 2e-86 UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostri... 320 3e-86 UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocyst... 320 4e-86 UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira ... 320 6e-86 UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatron... 318 1e-85 UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranu... 318 2e-85 UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistip... 317 4e-85 UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia Re... 317 4e-85 UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collins... 316 5e-85 UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collins... 316 5e-85 UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein... 316 6e-85 UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira R... 315 1e-84 UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobiu... 314 2e-84 UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacill... 314 3e-84 UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 313 6e-84 UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla ... 312 8e-84 UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacte... 311 2e-83 UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus a... 311 2e-83 UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia Re... 311 2e-83 UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriac... 311 2e-83 UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostri... 311 3e-83 UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaprot... 309 1e-82 UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cell... 308 1e-82 UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteri... 307 3e-82 UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomyceta... 306 4e-82 UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomona... 306 9e-82 UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacter... 305 9e-82 UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexi... 305 1e-81 UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira b... 305 1e-81 UniRef50_Q6A5C1 D-alanine--D-alanine ligase B n=4 Tax=Propioniba... 305 1e-81 UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter s... 305 2e-81 UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworth... 304 2e-81 UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales ... 304 2e-81 UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9... 304 3e-81 UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaero... 303 4e-81 UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes Re... 303 4e-81 UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus ... 303 7e-81 UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimo... 303 8e-81 UniRef50_B0MP08 Putative uncharacterized protein n=1 Tax=Eubacte... 302 8e-81 UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria Re... 302 9e-81 UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=D... 302 1e-80 UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidete... 301 1e-80 UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine s... 301 2e-80 UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia m... 301 2e-80 UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomyceta... 301 2e-80 UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coproco... 300 3e-80 UniRef50_A9N8L3 D-alanine--D-alanine ligase n=6 Tax=Coxiella bur... 300 5e-80 UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococ... 300 6e-80 UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteria... 300 6e-80 UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabact... 299 7e-80 UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacill... 299 7e-80 UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 299 1e-79 UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified E... 298 1e-79 UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicro... 298 1e-79 UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacte... 298 1e-79 UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacill... 298 2e-79 UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma ce... 298 2e-79 UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bactero... 297 3e-79 UniRef50_B9KHS3 D-alanine--D-alanine ligase n=5 Tax=Anaplasma ma... 297 4e-79 UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=... 296 5e-79 UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces ... 296 5e-79 UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriac... 295 1e-78 UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 294 3e-78 UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostoc... 293 5e-78 UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilu... 293 6e-78 UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis... 292 1e-77 UniRef50_Q8RDQ4 D-alanine--D-alanine ligase n=10 Tax=Fusobacteri... 290 4e-77 UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomyceta... 290 5e-77 UniRef50_Q60GK8 D-alanyl-D-alanine ligase n=2 Tax=Streptomyces R... 290 5e-77 UniRef50_D0RN14 D-alanine--D-alanine ligase B (D-alanylalanine s... 289 9e-77 UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Strep... 288 2e-76 UniRef50_B1JC77 D-alanine--D-alanine ligase n=2 Tax=Pseudomonas ... 288 2e-76 UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q87... 288 2e-76 UniRef50_Q821S4 D-alanine--D-alanine ligase n=15 Tax=Chlamydiace... 287 3e-76 UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho ... 287 4e-76 UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma w... 286 7e-76 UniRef50_C5C6M9 D-alanine--D-alanine ligase n=4 Tax=Actinomyceta... 286 7e-76 UniRef50_C0BG03 D-alanine--D-alanine ligase n=1 Tax=Flavobacteri... 283 4e-75 UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas... 283 5e-75 UniRef50_B0RDP5 D-alanine--D-alanine ligase B n=4 Tax=Actinobact... 283 7e-75 UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothr... 282 1e-74 UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Rumin... 281 2e-74 UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermac... 281 3e-74 UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=... 280 5e-74 UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteo... 278 2e-73 UniRef50_D2MND8 D-ala D-ala ligase N-terminal domain protein n=2... 276 6e-73 UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT 275 1e-72 UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae... 272 1e-71 UniRef50_A1SMF1 D-alanine--D-alanine ligase n=1 Tax=Nocardioides... 272 1e-71 UniRef50_A6TUJ5 D-alanine--D-alanine ligase domain protein n=3 T... 270 4e-71 UniRef50_A9BI46 D-alanine--D-alanine ligase n=1 Tax=Petrotoga mo... 268 2e-70 Sequences not found previously or not previously below threshold: >UniRef50_A7FM64 D-alanine--D-alanine ligase n=32 Tax=Proteobacteria RepID=DDL_YERP3 Length = 306 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 222/306 (72%), Positives = 252/306 (82%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M +K+AVLLGGTSAEREVSL SG AVLAGL+E GIDAY VD K+ VTQLK GF KVFI Sbjct: 1 MAEKVAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVDTKDFPVTQLKEQGFDKVFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGRGGEDGTLQG+LE + LPYTGSGVMASAL+MDKLR+KL+WQ GLP++P+VAL R Sbjct: 61 ALHGRGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQ 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 +FE ++ +A ++ LGLP+IVKPS EGSSVGMSKV + LQ AL AFQHD +VLIE Sbjct: 121 QFETLSPEELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASELQKALVEAFQHDSDVLIE 180 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 KWLSGPEFTVAILG+E+LPSIRIQP G FYDY+AKYLSD+TQYFCP+GL E L AL Sbjct: 181 KWLSGPEFTVAILGDEVLPSIRIQPPGVFYDYDAKYLSDKTQYFCPSGLSDESEQQLAAL 240 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L+A+ L C GWGR+DVM D DG FYLLE NTSPGMTSHSLVPMAARQ G+SFSQLV R Sbjct: 241 ALQAYHALDCSGWGRVDVMQDRDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVAR 300 Query: 301 ILELAD 306 IL LAD Sbjct: 301 ILMLAD 306 >UniRef50_C4K734 D-alanine--D-alanine ligase n=86 Tax=Bacteria RepID=DDL_HAMD5 Length = 320 Score = 399 bits (1026), Expect = e-110, Method: Composition-based stats. Identities = 196/319 (61%), Positives = 241/319 (75%), Gaps = 14/319 (4%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M +K+AVLLGGTS+ER++SL SG AV+AGLRE GIDA P+D K VT+LK GF K FI Sbjct: 1 MPEKVAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPIDTKNFLVTELKEKGFTKAFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGR GEDG LQ +LE + +PYTGSGVMASAL+MDK RSK+++QGAGLPV+P+VAL R Sbjct: 61 ALHGRDGEDGHLQAVLEFLKIPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNRE 120 Query: 121 EFEKGL--------------SDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDA 166 + + S+K + I+ LGLP+IVKPSREGSS GM+KV + L DA Sbjct: 121 QIWPNVTQNTSNDLLLNNRISNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQLDDA 180 Query: 167 LRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCP 226 L+ A+ +DEE+L+EKW G E TVAILG+ +LPSIRIQ S FYDY+AKY+SD+TQYFCP Sbjct: 181 LKKAWHYDEEILVEKWHFGTELTVAILGDTVLPSIRIQVSDIFYDYQAKYVSDKTQYFCP 240 Query: 227 AGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMA 286 +GL+ QE L L + A+ LGC GWGR+DVMLD +G FYL+E NT+PGMT HSL PMA Sbjct: 241 SGLKQEQEKQLATLSMNAYRALGCDGWGRVDVMLDDEGHFYLMEINTAPGMTDHSLFPMA 300 Query: 287 ARQAGMSFSQLVVRILELA 305 ARQAG SFS+LV +IL LA Sbjct: 301 ARQAGFSFSELVCKILSLA 319 >UniRef50_A5D2F9 D-alanine--D-alanine ligase n=9 Tax=Bacteria RepID=DDL_PELTS Length = 318 Score = 392 bits (1009), Expect = e-108, Method: Composition-based stats. Identities = 128/309 (41%), Positives = 189/309 (61%), Gaps = 4/309 (1%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 MT K+ VL+GG S+EREVSL +G AV L+ A +D V ++K FI Sbjct: 1 MTLKVGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKEERIDLAFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGR GEDGT+QG+LE++ +PYTGSGV+ASAL+MDK +K + Q GLP P++ + + Sbjct: 61 ALHGRYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKK 120 Query: 121 E-FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 E ++ L +GLP++VK +GS++GMS V E + AL LA+ +D L+ Sbjct: 121 EALKESLQACSERICREMGLPLVVKAPTQGSTIGMSFVHKEEDMAGALELAYDYDPVALV 180 Query: 180 EKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 E+++ G E T +ILG E LP I I + YDY+AKY + + + P + Q+ Sbjct: 181 EQFIRGTEVTASILGNEEPVALPLIEIVSATGVYDYKAKYTAGMSDHIIPPRIPEKQQNA 240 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 ++ L + + +LGC+G R+D ++D G ++LE NT PGMT+ SL P AAR AG+ F Sbjct: 241 IKKLAVSTFKSLGCRGLARVDFIVDKQGNPFILEVNTIPGMTATSLFPDAARAAGIEFPD 300 Query: 297 LVVRILELA 305 L+ +++ELA Sbjct: 301 LIEKLVELA 309 >UniRef50_B3E3X9 D-alanine--D-alanine ligase n=21 Tax=Bacteria RepID=DDL_GEOLS Length = 313 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 135/304 (44%), Positives = 182/304 (59%), Gaps = 8/304 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 +I VL+GG SAER+VSL SG AV L G D+ +D + L+ FIAL Sbjct: 9 KRIGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILREEKIDLAFIAL 68 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGR GEDG +QG+LELM +PYTGSGV+ASAL+M KL SK + AGL + P+ + + + Sbjct: 69 HGRYGEDGCIQGLLELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQGD- 127 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + AE GLPV+VKP +EGSSVG++ V LQ AL AF++D VL+EK+ Sbjct: 128 ------RCNAEQLPFGLPVVVKPVQEGSSVGVTIVKKPEDLQAALDEAFRYDTLVLVEKY 181 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E V IL + + +I I P FYD+EAKY ++ PA L +Q L Sbjct: 182 IKGQEVQVGILANQPIGAIEIVPKNEFYDFEAKYSDGMAEHIFPARLAEPLYQKVQQQGL 241 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQ-AGMSFSQLVVRI 301 +A LGC G+ R+D ++ +G YLLE NT PGMT+ SL+P A++ AG+SF LV +I Sbjct: 242 QAHQALGCDGYCRVDFLVTENGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEALVEQI 301 Query: 302 LELA 305 A Sbjct: 302 ACSA 305 >UniRef50_Q1JXB8 D-alanine--D-alanine ligase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXB8_DESAC Length = 305 Score = 385 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 10/309 (3%) Query: 1 MT---DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQK 57 M +I V++GGTSAEREVSL +GAA++ L E G +D + QL Sbjct: 1 MKNKQQRIGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKTLPAQLIEKQIDV 60 Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 VF+A+HGR GEDGT+QGMLELM +PYTGSGV+ASAL++DK +K + G+ + Sbjct: 61 VFLAVHGRFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLV 120 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 + + P +VKP REGS++G++ + L+ A+ A +D V Sbjct: 121 DVNSDVDDIVAQCGH------FPQVVKPVREGSTLGIAIANNADELKQAIAQARDYDRRV 174 Query: 178 LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 L+E ++ G E TV+++ L I I P FYDY AKY +T+Y PA L SQ + Sbjct: 175 LVEDYIDGREVTVSVMNGRALSIIEIVPESGFYDYTAKYTVGKTRYLVPAPLPESQYKAI 234 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Q + ++ +LGC+G R+D M+ D FY LE NT PGMT SL+P AA GM F++L Sbjct: 235 QQAAVASYASLGCRGAARVDFMVT-DDNFYFLEVNTIPGMTETSLLPKAAADCGMDFAKL 293 Query: 298 VVRILELAD 306 V IL+ A Sbjct: 294 VEGILDDAS 302 >UniRef50_A3DGS7 D-alanine--D-alanine ligase n=14 Tax=Bacteria RepID=DDL_CLOTH Length = 376 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 112/360 (31%), Positives = 174/360 (48%), Gaps = 56/360 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA------------------------ 37 ++ V+ GG S+E EVS S ++L + D Sbjct: 4 KKRVLVIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSG 63 Query: 38 -----YPVDPKEVDVTQL-----------------------KSMGFQKVFIALHGRGGED 69 D ++ KS VF LHG GED Sbjct: 64 EWEEIALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGED 123 Query: 70 GTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDK 129 GT+QG+ EL G+PY G GV+ASA+ MDK+ +K++++ AG+P A ++ TR E + Sbjct: 124 GTIQGLFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGV 183 Query: 130 QLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFT 189 PV VKPS GSSVG+SK +N L++AL A ++D +VLIE++++G E Sbjct: 184 VDKIEEKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAARYDRKVLIEEFINGREVE 243 Query: 190 VAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWT 246 A+LG + I P FYDY+AKY+ + ++ PA L ++ +KA+ Sbjct: 244 CAVLGNDDPVASTVGEIIPGNEFYDYKAKYIENTSKIKIPADLPEETVEQIRNYAVKAFK 303 Query: 247 TLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L C G R+D + + G+ Y+ E NT PG TS S+ PM ++G+S+ +L+ ++++LA Sbjct: 304 ALDCSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363 >UniRef50_B0KBI1 D-alanine--D-alanine ligase n=13 Tax=Clostridia RepID=DDL_THEP3 Length = 359 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 117/348 (33%), Positives = 170/348 (48%), Gaps = 46/348 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG------- 54 KIAVL GG S E EVSL S +++ L + + Y V + L Sbjct: 3 KKKIAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIETG 62 Query: 55 --------------------------------FQKVFIALHGRGGEDGTLQGMLELMGLP 82 VF LHG GEDGT+QG+LEL+ +P Sbjct: 63 EWEKEGIPAIMGASTKYRGIITFEDGENGFYPIDVVFPVLHGPNGEDGTIQGLLELLDMP 122 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y G+ V++SAL MDK+ +K +++ AGLP +V + E E + +I LG P Sbjct: 123 YVGANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIED--LEAIKKKIEHLGYPCF 180 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILP 199 VKP+ GSSVG++KV E L AL+LA ++D ++LIE+ + E ++LG E Sbjct: 181 VKPANLGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENPEASI 240 Query: 200 SIRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 + I PS FYDY AKY ++ PA L + ++ L +KA+ L +G R+D Sbjct: 241 AGEIVPSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMARVDF 300 Query: 259 MLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++D + G YL E NT PG T S+ P +G S+S L+ ++ LA Sbjct: 301 LMDRNTGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLLDELINLA 348 >UniRef50_C0QUP4 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=5 Tax=Aquificales RepID=C0QUP4_PERMH Length = 303 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 127/306 (41%), Positives = 180/306 (58%), Gaps = 12/306 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE--VDVTQLKSMGFQKVF 59 KIA+L GG+S+ERE+S+ SG AV L++ G DP E + ++ F Sbjct: 3 KLKIALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFDPAEGKDFIKKITDYNPDLAF 62 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG+ GEDGT+QG+LE +G+ YTGS + SA+ MDK +K + + G+ V + Sbjct: 63 IALHGKIGEDGTIQGVLEFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTIQN 122 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 + L LG PV+VKP+ EGSS+G+ V E+ L A+ + D +V+I Sbjct: 123 LDQINDL---------RLGYPVVVKPNSEGSSIGVKIVENEDQLGKAVGEILKIDSKVII 173 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 E+++ G E TV IL E L I I+ FYDY KY+S ET+Y CPA +E+S +Q Sbjct: 174 ERFIKGREITVGILNGEPLDIIEIKVKEGFYDYYNKYISQETEYICPAEIESSLYRKIQN 233 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 LK + LGCKG R+D +LD D + Y LE NT PG+T HSL+P AA G++F L++ Sbjct: 234 TALKIYNILGCKGVARVDFILDKD-KPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLIL 292 Query: 300 RILELA 305 +I+E A Sbjct: 293 KIIEGA 298 >UniRef50_C0WE55 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE55_9FIRM Length = 312 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 128/312 (41%), Positives = 185/312 (59%), Gaps = 11/312 (3%) Query: 1 MT-DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDV-TQLKSMGFQKV 58 M +I V++GG S EREVSLN+G+A++ L+E G DA P+D +Q++ G + V Sbjct: 2 MKTKRIGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDPSLFPSQIEDAGVKVV 61 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F A+HG GEDG LQ +LE++G+PYTGSGV++SA++M+K +K +++ G+ A + LT Sbjct: 62 FNAVHGLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLT 121 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 + + D I LG+P +VKP+ +GSS+G++ V E L AL AF + + VL Sbjct: 122 DKDRQTAKQD----IIRKLGIPCVVKPAEQGSSIGVTIVKKEEDLDKALEEAFSYGKLVL 177 Query: 179 IEKWLSGPEFTVAILGEEILPSIR-----IQPSGTFYDYEAKYLSDETQYFCPAGLEASQ 233 E + +G E ++ + I I+P FYDY KY T Y CPA + Sbjct: 178 AEAFFTGKEVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFDECL 237 Query: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 LQ +KA+ LGC G R+D M+D++G F LE NT PGMT+ SLVP AA+ G+S Sbjct: 238 TKALQEEAVKAYKALGCSGVARVDEMVDAEGNFICLEVNTIPGMTATSLVPKAAKAMGLS 297 Query: 294 FSQLVVRILELA 305 F L +ILE A Sbjct: 298 FPDLCEKILETA 309 >UniRef50_Q2JJV2 D-alanine--D-alanine ligase n=3 Tax=Cyanobacteria RepID=DDL_SYNJB Length = 325 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 126/307 (41%), Positives = 180/307 (58%), Gaps = 9/307 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD---VTQLKSMGFQKVF 59 I VL GG SAER+VS +G A L + G +DP E + Q + G V+ Sbjct: 1 MNIVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDEDLPLRLWQERQAGCDFVW 60 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG GGEDG +QGML+ +GLPY GSG +ASAL+MDKL SK +++ AG+P W Sbjct: 61 IALHGPGGEDGVVQGMLDWLGLPYQGSGPLASALAMDKLVSKQIFRAAGIPTPDWQV--- 117 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 ++ + LG P+++KPS GS+VG+S V E + L LA + + Sbjct: 118 --WDDQNPLTWADCAAELGSPLVIKPSNNGSTVGISIVRDERSFAQGLELARSVSSRIFL 175 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPS-GTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 E+++ G E T++IL ++LP+I I P+ G FYDYEAKY +++ P L + A + Sbjct: 176 ERYVPGKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSPAGLARCE 235 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 A LKA+ LGC+G R+D+ +D + ++LE NT PGMT SL P AA G +F++LV Sbjct: 236 AAGLKAYQALGCEGLARVDLRVDPEENPWVLEVNTLPGMTPTSLCPDAAAALGWTFTELV 295 Query: 299 VRILELA 305 R+L+ A Sbjct: 296 ERMLQDA 302 >UniRef50_A5WCU0 D-alanine--D-alanine ligase n=34 Tax=Proteobacteria RepID=DDL_PSYWF Length = 332 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 163/301 (54%), Positives = 204/301 (67%), Gaps = 11/301 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AV+ GG S ER VSL+SG AVL L+ GIDA DPK+ DVT+LK + +VF LH Sbjct: 37 KVAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFDPKDQDVTELK--NYDRVFNVLH 94 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDG LQG+L+ +GLP TGSGV+ASA+ MDK+R+K LW G GL AP+ L Sbjct: 95 GRGGEDGQLQGLLDWLGLPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVL------ 148 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 G ++ LGLP+IVKP EGSS+GMSKV + L A +A + V+ EKW+ Sbjct: 149 -GADTDWQQIVNTLGLPLIVKPVHEGSSIGMSKVNTLDELPKAYEVAAGCGDVVMAEKWI 207 Query: 184 SGPEFTVAILGEEILPSIRIQPSG--TFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 +G EFT+ I+ +E P IR+QP+ FYDYEAKY ++TQY P GL A +EA+LQAL Sbjct: 208 TGREFTIVIIDDEAYPVIRLQPADISNFYDYEAKYNRNDTQYHIPCGLSAEEEAHLQALS 267 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L A+ + KGWGRID M D +G F+LLE NT PGMTSHSLVPMAA+ GM+F QL I Sbjct: 268 LAAFKAVDAKGWGRIDAMQDEEGNFWLLEINTVPGMTSHSLVPMAAKARGMNFEQLCWHI 327 Query: 302 L 302 L Sbjct: 328 L 328 >UniRef50_B5FI74 D-alanine--D-alanine ligase B n=1 Tax=Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 RepID=B5FI74_SALDC Length = 285 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 258/306 (84%), Positives = 273/306 (89%), Gaps = 21/306 (6%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M DKIAVLLGGTSAER+VSLNSGAAVLAGLREGGIDA+PVDP+EVDV QLK+MGFQKVFI Sbjct: 1 MADKIAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHGR GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA Sbjct: 61 ALHGR---------------------GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 99 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 EFEKGLS++Q A ISALGLP+IVKPSREGSSVGM+KVV ENALQ AL LAFQHD+E+LIE Sbjct: 100 EFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGALSLAFQHDDEILIE 159 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 KWL GPEFTVAI+GEEILPSIRIQP+GTFYDYEAKYLSDETQYFCPAGL+ASQEA LQ+L Sbjct: 160 KWLCGPEFTVAIVGEEILPSIRIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSL 219 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 VL+AW LGC GWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR Sbjct: 220 VLQAWKALGCTGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 279 Query: 301 ILELAD 306 ILELAD Sbjct: 280 ILELAD 285 >UniRef50_D2RKQ9 D-alanine/D-alanine ligase n=6 Tax=root RepID=D2RKQ9_ACIFE Length = 310 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 133/310 (42%), Positives = 187/310 (60%), Gaps = 10/310 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-EVDVTQLKSMGFQKVFI 60 D++AV++GG S EREVSLN+G A+L L+E G DA +D E V QLK+ G + VF Sbjct: 4 KDRVAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLDPEHIVDQLKASGARVVFN 63 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 A+HG GEDG LQG+LE++G+PYTGSGV+ASAL+MDK+ +K L+Q +P A + L + Sbjct: 64 AVHGLYGEDGRLQGILEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDKK 123 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + + + +G+P +VKP+ +GSS+G+ V E L DAL+ AFQ+ + VL E Sbjct: 124 RDQDPKA----RILEEIGIPCVVKPATQGSSIGVVIVKDEKQLDDALQEAFQYGDHVLCE 179 Query: 181 KWLSGPEFTVAILGEEIL-----PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 + +G E ++ E P + I+P FYD+ KY T Y CPA +A Sbjct: 180 AFFTGKEVAAGVMMGEDGRAVPMPLVLIEPHVNFYDFHNKYTKGATTYTCPAPFDAETTR 239 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 LQ + + A+ LGC G R D+ML +G LE NT PGMT+ SL+P AA G+SF Sbjct: 240 RLQKIAVAAYEALGCSGVARTDLMLADNGDCIALEVNTIPGMTATSLIPKAAAAMGISFP 299 Query: 296 QLVVRILELA 305 L +IL+ A Sbjct: 300 DLCEKILKTA 309 >UniRef50_B2A2Z6 D-alanine--D-alanine ligase n=2 Tax=Clostridia RepID=DDL_NATTJ Length = 365 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 111/348 (31%), Positives = 177/348 (50%), Gaps = 43/348 (12%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------- 40 M ++ VL GG S E EVSL S ++L L + P+ Sbjct: 1 MKKLRVGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELE 60 Query: 41 ---------------DPKEVDVTQL----KSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 DP + + +L K +F LHG GEDGT+QG L+L G+ Sbjct: 61 TGIKNQGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFLDLCGI 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY GSGV+ S+L+MDK+ K + + GL VA + + R+E+E+ + + L P+ Sbjct: 121 PYVGSGVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQLSYPI 180 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EIL 198 VKP+ GSSVG+SKV L + LA ++D + L E+++ G E ++ILG + Sbjct: 181 FVKPANLGSSVGISKVKNREELIQGIDLAVKYDMKCLAEEFIPGKEIELSILGNDNPKTS 240 Query: 199 PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I P+ FYDY AKY++++++ PA L + + ++ + ++A+ L C G R+D Sbjct: 241 VPGEIIPANEFYDYNAKYINNKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYGLSRVDY 300 Query: 259 MLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + D + Y+ E NT PG T S+ P ++G+S+SQL+ ++ LA Sbjct: 301 FVLEDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLLTDLIYLA 348 >UniRef50_A1WYU0 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_HALHL Length = 304 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 158/302 (52%), Positives = 209/302 (69%), Gaps = 11/302 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL+GGTSAER++SL SG A+LA L+ G DA DP++ + L+ G+ VFIALH Sbjct: 12 RVAVLMGGTSAERDISLRSGGAILAALQRCGYDAEAYDPRDRALEGLR--GYDVVFIALH 69 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDGT+QG+L+L+G+PYTGSGV+ SAL MDK R K LWQG+GLP LT Sbjct: 70 GRGGEDGTVQGLLDLLGIPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLTGDRPV 129 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 +G PVIVKP+REGSS+GMS+V L +A R+A +D+ VL E W+ Sbjct: 130 LD---------EGVGYPVIVKPAREGSSLGMSRVEGPEELAEAYRVAAAYDDTVLAEAWV 180 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E+TVA+LG++ LPSIR++ F+DY AKY +++T + CP+GL +EA L AL + Sbjct: 181 EGEEYTVALLGDQALPSIRLETPHAFFDYAAKYQAEDTGHHCPSGLGPEEEAELGALCRE 240 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ G GWGR+DVM D+ G+++LLE NT PGMT HSLVP+AA QAG+ F +LV RIL Sbjct: 241 AFIASGGNGWGRVDVMRDTGGRWWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILG 300 Query: 304 LA 305 A Sbjct: 301 EA 302 >UniRef50_Q31I42 D-alanine--D-alanine ligase n=2 Tax=Gammaproteobacteria RepID=DDL_THICR Length = 313 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 150/301 (49%), Positives = 207/301 (68%), Gaps = 7/301 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVL+GG +AER+VSL SGA VL L+ G+DA D V + + + FIALH Sbjct: 17 KVAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVTSVAQLVEIAQKYDRAFIALH 76 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +Q +L+ + LPYTGSG+ ASAL+MDKLR+K LW+G GLP ++ ++ + Sbjct: 77 GRWGEDGGVQAVLDSLALPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPL 136 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 E L PVIVKPS EGSS+GM KV +ALQ+A+ A Q+D E+LIE+W+ Sbjct: 137 D-------VETFDLTFPVIVKPSHEGSSIGMRKVDTLDALQEAVDFAQQYDSEILIEQWI 189 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 +G EFT A+L E LP I+++ FYD++AKY S+ T+Y CP GLE ++E +QALVL+ Sbjct: 190 TGREFTCAVLDGEALPMIQLKTDHDFYDFDAKYQSNTTEYLCPCGLEIAEEKRIQALVLQ 249 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ +G + WGR+D+MLD Q +L+E NT PGMT HSLVPMAA+ +SFS+LV++++ Sbjct: 250 AFDAVGARHWGRVDLMLDDQNQPWLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVLKLIS 309 Query: 304 L 304 L Sbjct: 310 L 310 >UniRef50_A4XJ89 D-alanine--D-alanine ligase n=3 Tax=Clostridia RepID=DDL_CALS8 Length = 364 Score = 372 bits (956), Expect = e-102, Method: Composition-based stats. Identities = 112/346 (32%), Positives = 168/346 (48%), Gaps = 42/346 (12%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------------------- 40 K+AVL GG S E EVS+ S +V+ L + + P+ Sbjct: 3 KLKVAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLDSK 62 Query: 41 ------------DPKEVDVTQLKS-----MGFQKVFIALHGRGGEDGTLQGMLELMGLPY 83 D + + ++K + VF LHG GEDGT+QG+LEL G+PY Sbjct: 63 WTMYSIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPY 122 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 G GV++SAL MDK +K L G+P ++ + + E+ S PV V Sbjct: 123 VGCGVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESEFSYPVFV 182 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPS 200 KP+ GSSVG+SK ++ L A+ AF +D ++LIE+ ++ E A+LG + Sbjct: 183 KPANSGSSVGISKAKDKDELILAIHEAFLYDTKILIEQAINAREIECAVLGNSEILVSAL 242 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I PS FY YEAKY+ ++ PA LE E ++ L +K + C G RID + Sbjct: 243 GEIVPSREFYSYEAKYIDGSSELIIPAKLEKQVEDEIKELAVKIYKLFECSGMARIDFFV 302 Query: 261 DSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D + + Y E NT PG TS S+ P +G+ + QL+ ++++LA Sbjct: 303 DKETNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLA 348 >UniRef50_B8FWD5 D-alanine/D-alanine ligase n=2 Tax=Desulfitobacterium hafniense RepID=B8FWD5_DESHD Length = 361 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 116/346 (33%), Positives = 170/346 (49%), Gaps = 42/346 (12%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP-------------------- 39 MT KI +L GG S E EVSLNS ++VL + + + Sbjct: 1 MTRQKIIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQ 60 Query: 40 ------------VDPKEVDVTQL------KSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 DP L + F +F LHG GEDGT+QG+ E+ + Sbjct: 61 DPALEGIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANI 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY GSGV+ SAL MDK R K ++ AGLP AP++ + R +K + +LG P Sbjct: 121 PYAGSGVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPC 180 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---IL 198 VKP+ GSSVG+SK L AL+LA ++D ++++E+ + G E +++LG E Sbjct: 181 FVKPANLGSSVGISKARNREELIQALQLAAEYDRKLVVEQNIVGREIELSVLGNEDAQAS 240 Query: 199 PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I P+ FYDYEAKY+ +Q PA L +LQ + A+ + G R+D Sbjct: 241 IPGEILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDF 300 Query: 259 MLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + GQ Y+ E NT PG T S+ P +G+ +++L+ R++EL Sbjct: 301 FVTEGGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIEL 346 >UniRef50_C1AEL0 D-alanine--D-alanine ligase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEL0_GEMAT Length = 344 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 136/343 (39%), Positives = 190/343 (55%), Gaps = 41/343 (11%) Query: 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM----- 53 M+ +I VLLGG SAER+VSL+SG + LRE G + +DP E +T+ Sbjct: 1 MSKSLRITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLAS 60 Query: 54 -------------------------------GFQKVFIALHGRGGEDGTLQGMLELMGLP 82 +F+ALHG GEDGT+Q +L+++G+P Sbjct: 61 GVGSAPPSLEALAGLESRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQALLDMVGVP 120 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 YTGSG +ASAL+MDK SK++ + AG+ A W+ + + L L PV+ Sbjct: 121 YTGSGHLASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLD--ADDVGRHLDWPVV 178 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR 202 VKPS++GS+VG+S V A L A+R AF++D+EV+IE+++ G E TV ILG+ +LP+I Sbjct: 179 VKPSKQGSTVGLSIVRAPEELAAAVREAFRYDDEVMIERFVPGRELTVGILGDAVLPTIE 238 Query: 203 IQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 IQP YDYE KY + F A L + + L +A+ L +G+ RID LD Sbjct: 239 IQPVKELYDYECKYTPGMAKEFV-AELSPEEASKLADQAKRAFQALKLRGYARIDFRLDP 297 Query: 263 DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 GQ + LEANT PGMT SL+P AA AG+ F L RI++LA Sbjct: 298 QGQPWCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLA 340 >UniRef50_B5ELC0 D-alanine/D-alanine ligase n=3 Tax=Acidithiobacillus RepID=B5ELC0_ACIF5 Length = 308 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 149/304 (49%), Positives = 189/304 (62%), Gaps = 8/304 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQ-LKSMGFQKVFIAL 62 +IAVL GG S EREVSL+SG AVL L+ G+DA VD + + Q + G Q F Sbjct: 6 RIAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDIQPAILQQQMAESGAQIAFNVC 65 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDG LQ LE + +PYTGSGV+ASAL+MDK R K LW+ AGLPV + L R Sbjct: 66 HGAVGEDGLLQACLETLDMPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILLHRGSH 125 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 L + G P+ +KP+ GSS+G+SKV L AL+ AF ++EVL E Sbjct: 126 TPDLG-------ARFGWPLYIKPNHGGSSLGVSKVGGPAELDAALQCAFAIEDEVLCEGA 178 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E TV IL + LP I I+ FYDY AKYL+D+T+Y P+GL A E LQAL L Sbjct: 179 VIGHEVTVGILDGQALPPIVIETPRAFYDYTAKYLADDTRYLLPSGLGAPLEQQLQALAL 238 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +A+ LGC+ WGR+D M+ DG+ +LLE N+ PGMTSHSL+PMAA+ GM F +L IL Sbjct: 239 RAFAELGCRDWGRVDFMIGGDGRPHLLEVNSVPGMTSHSLIPMAAKATGMGFPELCATIL 298 Query: 303 ELAD 306 A Sbjct: 299 RTAQ 302 >UniRef50_Q8PPA6 D-alanine--D-alanine ligase n=15 Tax=Gammaproteobacteria RepID=DDL_XANAC Length = 318 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 159/303 (52%), Positives = 205/303 (67%), Gaps = 8/303 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVLLGGTS+EREVSLNSG VL LR G+DA PVD L + F +VF LH Sbjct: 18 RVAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLH 77 Query: 64 G--RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 G GGEDG +QG++E G+PYTGS V+ SALSMDK+R+K +W GL + L Sbjct: 78 GHNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAG- 136 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 ++ A +GLP+IVKP+ EGSSVG+S+V + L++A+ LA ++D +L+E+ Sbjct: 137 ---ASAEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAARYDGALLMEQ 193 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E TVA+LG+ LPSIRI P G +YDY AKY++D+TQY CP GLE EA ++ L Sbjct: 194 LIEGDELTVAVLGDTALPSIRIVPKGQWYDYNAKYIADDTQYLCP-GLEGEAEAQIRQLA 252 Query: 242 LKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L A+ GC+GWGR+DVM D GQ YLLE NT+PGMTSHSLVP AARQ G+ F LV R Sbjct: 253 LDAFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWR 312 Query: 301 ILE 303 +LE Sbjct: 313 VLE 315 >UniRef50_Q023Q5 D-alanine--D-alanine ligase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=DDL_SOLUE Length = 325 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 163/317 (51%), Gaps = 18/317 (5%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------DPKEVDVTQLKS 52 M ++AV+ GG + E EVS+ S ++LAGL + P + Sbjct: 1 MKLRVAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKWSPGPILPEPGAH 60 Query: 53 MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVA 112 VF LHG GEDGT+QG+LEL LPY G+GV+ SA+SMDK K + + LP+ Sbjct: 61 ANIDVVFPVLHGTFGEDGTVQGLLELADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIV 120 Query: 113 PWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ 172 +V +TR + + L P+ VKP+ GSSVG+SK E L+ A LA Q Sbjct: 121 DYVTVTRQ------TPSIVDACRRLPFPMFVKPANLGSSVGISKAHDEQELEAAFSLAKQ 174 Query: 173 HDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGL 229 +D ++++E+ + G E ++LG E I PS FYDYE KYL D + PA L Sbjct: 175 YDRKIIVERGIEGRELECSVLGNEAPMASLPCEILPSREFYDYEDKYLLDMARTQVPADL 234 Query: 230 EASQEANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAAR 288 + ++ L ++ + + C+G R+D L+ + Y+ E NT PG TS S+ P Sbjct: 235 PGERTDEIRRLAVECYRAVECEGMARVDFFLEHGTNRLYINEINTIPGFTSISMYPKMWE 294 Query: 289 QAGMSFSQLVVRILELA 305 +G+ F L+ +++E A Sbjct: 295 HSGIPFCTLLDQLIEFA 311 >UniRef50_B8I590 D-alanine--D-alanine ligase n=14 Tax=root RepID=DDL_CLOCE Length = 376 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 100/358 (27%), Positives = 163/358 (45%), Gaps = 54/358 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV---------------- 45 ++A++ GG S+E EVS S +V+ + + D + + Sbjct: 3 KKRVAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGITKSGQWLKYDGPVEKIGNG 62 Query: 46 DVTQLKSMGF--------------------------------QKVFIALHGRGGEDGTLQ 73 D + +F LHG GEDGT+Q Sbjct: 63 DWEAIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGTIQ 122 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 G+ EL G+PY G GV+ SA+ MDK +K++++ GLP ++ R + + D Sbjct: 123 GLFELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVAQI 182 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL 193 L P VKPS GSSVG++K +L AL +A ++D +L+E++++G E A+L Sbjct: 183 EGRLTYPCFVKPSNAGSSVGVNKASDRESLVKALNIAAKNDRRILVEEFINGREIECAVL 242 Query: 194 GEE---ILPSIRIQPSGTFYDYEAKYLSD-ETQYFCPAG-LEASQEANLQALVLKAWTTL 248 G + + P FYDYEAKY ++ PA L ++ ++A+ L Sbjct: 243 GNDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFKCL 302 Query: 249 GCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C G R+D + + G+ Y+ E NT PG T S+ P +G+ +S+L+ +++ELA Sbjct: 303 DCAGLSRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIELA 360 >UniRef50_B4UES4 D-alanine--D-alanine ligase n=7 Tax=Myxococcales RepID=DDL_ANASK Length = 308 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 128/303 (42%), Positives = 175/303 (57%), Gaps = 5/303 (1%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 ++AVL GG S+EREVSL +GAA LR+ G D +D +L++ + F+AL Sbjct: 7 KRVAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARLRAERVEVAFVAL 66 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGR GEDG++QG+LE M +PYTGSGV+ASA+ MDK SK +++ GL VA + R Sbjct: 67 HGRFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPR--- 123 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + GLP +VKP+ EGSSVG+ V L A R A H +V++E++ Sbjct: 124 --ASAGSIGVGDLPFGLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAASHAGDVIVERY 181 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E VA+L + L +I I P+ FYDY AKY + T+YF PA L + + Sbjct: 182 VKGTEVDVAVLDGKALGAIEIVPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMEAAE 241 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A +GC G R+D ++ DG Y+LE NT PGMT+ SLVP A G+SF L RIL Sbjct: 242 AAHRGIGCSGVTRVDFIVAGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERIL 301 Query: 303 ELA 305 + A Sbjct: 302 DGA 304 >UniRef50_B8CWI5 D-alanine--D-alanine ligase n=1 Tax=Halothermothrix orenii H 168 RepID=DDL_HALOH Length = 343 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 101/337 (29%), Positives = 156/337 (46%), Gaps = 33/337 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE----------------- 44 ++ VL GG S E EVS+ S +V+ ++ P + Sbjct: 3 KLRLGVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILNNG 62 Query: 45 -------------VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMAS 91 V VF LHG GEDG LQG L+ + +PY G+ V++S Sbjct: 63 INEVKASKDRCITESVRVFLDHKLDIVFPVLHGPYGEDGKLQGFLDCLDIPYIGASVLSS 122 Query: 92 ALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSS 151 A MDK K L+ +P A + + E GL LG P VKP+ GSS Sbjct: 123 AAGMDKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRFLGWPCFVKPANMGSS 182 Query: 152 VGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPSGT 208 +G+SKV + ++ AL F +D +++ E+++ G E ++LG E I P Sbjct: 183 IGVSKVHSPGEVKKALEKGFYYDRKLIFEEFVEGREIECSVLGNDQVEASLPGEILPGKE 242 Query: 209 FYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYL 268 FYDYEAKY ++T+ PA L+ S + L +KA+ + G+ R+D L ++G + Sbjct: 243 FYDYEAKYKDNKTRLVIPASLDESVIDKARNLAIKAFKAIDGNGFARVDFFLKNNGVLLV 302 Query: 269 LEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 E NT PG T +S+ P G+++ L+ +++ELA Sbjct: 303 NEINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIELA 339 >UniRef50_C7MLW8 D-alanine--D-alanine ligase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW8_CRYCD Length = 313 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 138/308 (44%), Positives = 192/308 (62%), Gaps = 10/308 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-VDVTQLKSMGFQKVFIA 61 K+A+L GGTS ERE+SL SG L++ G +DP + D+ QL S F F+ Sbjct: 8 MKVALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKKDDLAQLVSQPFDVAFLC 67 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHGRGGEDG +QG LE +GLPY G G+ +SA +MDK+++K+ ++ G+P + L R E Sbjct: 68 LHGRGGEDGAIQGFLETIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHRNE 127 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 I+ LG ++VKP+ EGS++G+S + +AL AL AF+ D VLIE Sbjct: 128 SVD-----AATVIAQLGNHLVVKPATEGSALGVSIIEGPSALDRALTEAFKLDNAVLIET 182 Query: 182 WLSGPEFTVAILGEE---ILPSIRIQPS-GTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 +++G E TVA++G E LP I I P G FYD+E+KY +D +Q+ CPA L Q + Sbjct: 183 FMAGTELTVAVIGNENASALPVIEIVPQLGEFYDFESKYAADGSQHICPARLTDEQTTAV 242 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Q + ++A LGC G R DV+L +DG ++LE NT PGMT+ SL+P A R AGMSF QL Sbjct: 243 QQVAVQAHKALGCCGVSRSDVILAADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQL 302 Query: 298 VVRILELA 305 R++ELA Sbjct: 303 CTRLIELA 310 >UniRef50_A0LQR5 D-alanine--D-alanine ligase n=6 Tax=Deltaproteobacteria RepID=DDL_SYNFM Length = 311 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 131/310 (42%), Positives = 174/310 (56%), Gaps = 12/310 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT-QLKSMGFQKVFI 60 +A+L GG SAEREVSL SG V L + DP + I Sbjct: 5 KLTVALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAHDLTRLAADAEKIDVALI 64 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHGR GEDGT+QG+LE +G+PY GSGV+ SA++M+K+ SK L+ AGLPVAP + R Sbjct: 65 ILHGRMGEDGTIQGLLESLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADRR 124 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 E LGLPV+VKP EGSS+G+S V + L A+ +Q+D LIE Sbjct: 125 E-----PPDLDTVADRLGLPVVVKPEHEGSSIGLSIVRNRDQLAAAVETGWQYDRRCLIE 179 Query: 181 KWLSGPEFTVAILGEEI---LPSIRIQPSG--TFYDYEAKYLSDETQYFCPAGLEASQEA 235 K++ G E T +LG + LP I I P F+DY+AKY ++ CPA L + A Sbjct: 180 KYVHGIEITGGVLGNDHLQALPLIEIIPGEAYEFFDYKAKYTPGASREICPARLSDTITA 239 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 Q KA L CKG+ R D+++ + ++LE NT PGMT+ SL P AA AG+SFS Sbjct: 240 KAQEYARKAHQALCCKGYSRTDMIVSGND-IFILETNTIPGMTATSLFPQAAAVAGISFS 298 Query: 296 QLVVRILELA 305 L+ R++ELA Sbjct: 299 ALLDRLIELA 308 >UniRef50_B0TAZ6 D-alanine--D-alanine ligase n=8 Tax=Bacteria RepID=DDL_HELMI Length = 366 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 160/346 (46%), Gaps = 42/346 (12%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL---------- 50 M IAV+ GG S E EVSL S +++ L + + L Sbjct: 2 MKQTIAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGSNVIDNLRK 61 Query: 51 ----------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLP 82 K + F LHG GEDGT+QG+ E +P Sbjct: 62 GQQPYGQRVYFIPDPTCPGLIEENPVTRKPVPVDVFFPVLHGPNGEDGTIQGLFEAANVP 121 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y G GV+ASA MDK K L+ + LP P++ + R +E LG P Sbjct: 122 YVGCGVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESAREQVIDEVEDRLGYPCF 181 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILP 199 VKP+ GSSVG+SK L A A ++D ++++EK ++ E V++LG + Sbjct: 182 VKPANMGSSVGISKATNRAELVAAFDDAVRYDRKLIVEKGINVREIEVSVLGNDEVVASV 241 Query: 200 SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 I P+ FYDY+AKY + +++ PA + A+ A Q + ++A+ + G R+D + Sbjct: 242 PGEIVPAHEFYDYDAKYAAADSRLLIPAPIAAADVATFQEMAIRAFRAIDGSGLSRVDFL 301 Query: 260 LDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 LD + G+ Y+ E NT PG TS S+ P G+ + +L+ R+++L Sbjct: 302 LDKNSGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVDL 347 >UniRef50_B7GV75 D-alanine--D-alanine ligase n=70 Tax=root RepID=DDL_ACIB3 Length = 308 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 155/302 (51%), Positives = 200/302 (66%), Gaps = 11/302 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG SAER VSL+SG AVL L G+ A DP+ VT+L + + + FI LH Sbjct: 9 KVAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTEL--VNYDRAFIVLH 66 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDG +QG+LE + +PYTG+GV SA+ MDK+++K +WQG+ LP AP+ +T+ Sbjct: 67 GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 I+ LGLPVI+KP EGSSVGMSKV A+ A QHD V+ EKW+ Sbjct: 127 DS-------VIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKATQHDAVVMAEKWI 179 Query: 184 SGPEFTVAILGEEILPSIRIQPSGT--FYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 +G EFT++ L + LP IR+QP FYDYEAKY ++ +Y P GL ++E LQAL Sbjct: 180 TGREFTISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALC 239 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L+A+ +G +GWGRID M D G F+LLE NT PGMTSHSLVP AA+ G SF +L V I Sbjct: 240 LRAFQAVGAEGWGRIDAMQDEQGNFWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAI 299 Query: 302 LE 303 L+ Sbjct: 300 LD 301 >UniRef50_B2SYX3 D-alanine--D-alanine ligase n=51 Tax=Betaproteobacteria RepID=DDL_BURPP Length = 313 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 156/302 (51%), Positives = 204/302 (67%), Gaps = 4/302 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG SAEREVSLNSG VL GLR+ G+DA+P DP E + LK GF + F ALH Sbjct: 11 KVAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKEEGFVRAFNALH 70 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GE+G +QG L+ G+ YTGSGV+ SAL +DK R+KL+WQ G+P P+ A+ R + Sbjct: 71 GGYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGD-- 128 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + ++ LGLP+ VKP+ EGSSV + KV + +AL AL A ++D+ V++EK + Sbjct: 129 -DYEARSKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAALIEAVKYDKIVVVEKSV 187 Query: 184 S-GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 G E+T I G LP IRI P+G FYDY AKY++++TQY P GL A +EA L+ L Sbjct: 188 EGGGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLAR 247 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +A+ LGC WGR D MLD+DG Y LE NT+PGMT HSL P AAR G+S+ +LVV +L Sbjct: 248 RAFDVLGCTDWGRADFMLDADGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVGVL 307 Query: 303 EL 304 L Sbjct: 308 AL 309 >UniRef50_C0ZB62 D-alanine--D-alanine ligase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB62_BREBN Length = 375 Score = 362 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 170/353 (48%), Gaps = 49/353 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD-----------------PKE 44 ++ ++ GG S+E EVSL + +++ + + PV P + Sbjct: 5 KIRLGIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQLPDK 64 Query: 45 VDVTQLKSMGF----------------------------QKVFIALHGRGGEDGTLQGML 76 ++ +L + VF +HG GEDGT+QG+L Sbjct: 65 IEALRLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGTIQGLL 124 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 EL +PY G+GVMASA+ MDK K ++ AGLP +V L R+++EKG D Sbjct: 125 ELANIPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMDRIERE 184 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE 196 LG P VKP+ GSSVG++K L+ AL +A + D +++E+++ E + +LG E Sbjct: 185 LGYPCFVKPANMGSSVGINKAKNREELKHALDVAAKFDRRLIVEEFVQVRELEIGVLGNE 244 Query: 197 ILP---SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 L + + FYDYEAKY T+ PA + + + +A+ L G Sbjct: 245 ELMTSVVGEVIAAKEFYDYEAKYKGAGTELSIPAIVPEHVSEQIAEIAKQAFQALDGSGL 304 Query: 254 GRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D D + + Y+ E NT PG T S+ PM + AG+ +S+L+ R+++LA Sbjct: 305 SRVDFFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQLA 357 >UniRef50_B6CM19 D-alanine--D-alanine ligase n=1 Tax=Buchnera aphidicola RepID=B6CM19_9ENTR Length = 310 Score = 362 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 152/303 (50%), Positives = 213/303 (70%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M K+AVLLGG S ER++S++SG AVL L GI AYP D ++ + QLK F +I Sbjct: 1 MKKKVAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFDTRDFPIMQLKKQKFDTAYI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG+GGEDG++QG+LE + +PYTGSG+MAS++S+DK R+KLLW+ AGLPV P V + + Sbjct: 61 ALHGKGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKK 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + K LS L P++VKP+ +GSS+G++ V +N L++A+ +AF + +L+E Sbjct: 121 DILKNLSSLLKKRFFKLDFPLLVKPNNQGSSIGITLVYLKNQLKNAIEVAFNYSNTILVE 180 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 +++ G E+TV+IL E+ILPSI+I FYD+ +KY TQY CP+GL QE L+ + Sbjct: 181 QFIKGTEYTVSILDEKILPSIQIITKNNFYDFASKYQLSSTQYLCPSGLNLKQEKKLKKI 240 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 KAW TLGC G GRIDV+LDS+ +F+LLE NT PGMT+ SL+P++A GMSF +LV+ Sbjct: 241 AKKAWDTLGCNGCGRIDVILDSNNKFWLLEINTIPGMTNRSLLPISANAIGMSFDELVLN 300 Query: 301 ILE 303 IL Sbjct: 301 ILN 303 >UniRef50_C9KQQ8 D-alanine--D-alanine ligase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQQ8_9FIRM Length = 312 Score = 362 bits (930), Expect = 8e-99, Method: Composition-based stats. Identities = 126/311 (40%), Positives = 188/311 (60%), Gaps = 9/311 (2%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQ-LKSMGFQKV 58 M KI V++GG S E E+S +G+A+L L+ G +A ++ + +K G V Sbjct: 1 MNQDKIVVVMGGPSTEAEISRQTGSAILKALQSKGYNAEGMELNPPTFAEDIKKSGCAIV 60 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F ALHG+ GEDG LQG L+++G+PYTGSGV+A+A++MDK SK ++ G+ Sbjct: 61 FNALHGKFGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYY 120 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 R E ++ L+ + LPV+VK + +GSS+G+ V ++AL+DAL+ AF +++EVL Sbjct: 121 RYEMKRDLAAE---IKQGFSLPVVVKAASQGSSIGVYIVETKDALEDALKEAFSYNDEVL 177 Query: 179 IEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 +E+++ G E TVA+ G E P I I + YDYE+KY + + PA + A + Sbjct: 178 VEEFIRGKELTVAVWGNEEKKEAFPIIEITTTSGRYDYESKYTKGASTHIIPARVSAEKT 237 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 +Q L +K +T GCKG R+D+ML DG Y++E N+ PGMT SLVP A R G+ F Sbjct: 238 KEIQDLAIKTFTACGCKGVARVDMMLSEDGTPYVIEVNSVPGMTELSLVPDAGRAMGVEF 297 Query: 295 SQLVVRILELA 305 +L RILE+A Sbjct: 298 PELCERILEMA 308 >UniRef50_Q21SX1 D-alanine--D-alanine ligase n=91 Tax=cellular organisms RepID=DDL_RHOFD Length = 346 Score = 362 bits (930), Expect = 9e-99, Method: Composition-based stats. Identities = 153/307 (49%), Positives = 201/307 (65%), Gaps = 12/307 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVL+GG SAEREVSL SG VL L G+DA+ DP E D+ +LK GF FIALH Sbjct: 28 KVAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFDPAERDLAELKVEGFSHCFIALH 87 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDGT+QG LEL+G+PYTGSGVMAS++++DK+ +K +W+ GLP W + Sbjct: 88 GRFGEDGTVQGALELLGIPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEWRQV------ 141 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + +ALG P+IVKP REGS++G++KV A LA +HD VL E+++ Sbjct: 142 -DSAAATSEAFAALGSPMIVKPDREGSTIGLTKVTQIEQCGAAYALAARHDAMVLCEQFV 200 Query: 184 SGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 G E T+ +LG LP IRI YDY+ KY +D TQY PA L A +EA++Q Sbjct: 201 KGDEVTIPLLGSGAGAHALPVIRIVAPDGNYDYQNKYFTDTTQYLVPANLPAGEEAHIQQ 260 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQ-FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 L LKA+ LGC+GW R+DVM+D+ + +LLE NTSPGMT HSLVPMAA+ AG+S+ L Sbjct: 261 LALKAYQVLGCRGWARVDVMIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALC 320 Query: 299 VRILELA 305 + +L A Sbjct: 321 LEVLRHA 327 >UniRef50_B3PCL8 D-alanine--D-alanine ligase n=8 Tax=Gammaproteobacteria RepID=B3PCL8_CELJU Length = 328 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 148/308 (48%), Positives = 200/308 (64%), Gaps = 13/308 (4%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++ VL GG SAERE+SL SGAAV+A L + GID +D + + +++ + F+ LH Sbjct: 18 RVGVLYGGLSAEREISLQSGAAVIAALEDAGIDHVAIDVGDNVIADIQAANIDRAFLMLH 77 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLW------QGAGLPVAPWVAL 117 G GGEDG +Q +LE + +PYTGS V +SAL+MDKLR+K LW LP + L Sbjct: 78 GPGGEDGRIQALLEFLHIPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVL 137 Query: 118 TRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEV 177 TR +AE+ LG V+VKP+ EGSS+GMS+V LQ A A + V Sbjct: 138 TRESD-------FVAELKRLGGEVMVKPANEGSSIGMSRVKTAEDLQAAFVKATDYQGSV 190 Query: 178 LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 L E+ + G E+TVAIL E LP IR++ +FYD+ AKY++++T+Y CP GL A +E L Sbjct: 191 LAERLIVGAEYTVAILDGEALPPIRLETDHSFYDFNAKYIAEDTRYICPCGLSAEKEQEL 250 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 + L L A+ LGC+GWGR+DVM D+ FYLLE NT+PGMTSHSLVPMAA+ G+SF++L Sbjct: 251 KQLALTAFNVLGCRGWGRVDVMADAQQNFYLLEVNTAPGMTSHSLVPMAAKAVGLSFTEL 310 Query: 298 VVRILELA 305 VV IL + Sbjct: 311 VVTILRAS 318 >UniRef50_Q1Q6C5 Strongly similar to D-alanine:D-alanine ligase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6C5_9BACT Length = 334 Score = 360 bits (926), Expect = 2e-98, Method: Composition-based stats. Identities = 129/323 (39%), Positives = 184/323 (56%), Gaps = 22/323 (6%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 T IAVL+GG S ERE+SL SG AV L++ G + +D K+ D+ +L FIA Sbjct: 3 TRNIAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDVKDEDIKELDHKEIDVAFIA 62 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG +Q +LE+ G+PYTGSGV AS ++MDK+ SK + AGL + L + Sbjct: 63 LHGYFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKP- 121 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 EI GLPV++KP+ GSS+G+S + N + A + +E +E+ Sbjct: 122 ---VNLADIEQEIQEFGLPVVIKPTNGGSSIGVSIIKEGNNFHYHVGEALKCGDEAFVER 178 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFC--------------PA 227 ++SG EFT+ IL LP I I + F+DY AKY S +T+YF P Sbjct: 179 YVSGREFTIGILDSRSLPIIEICVADDFFDYNAKYNSGKTRYFVINKTFENKTNILNTPC 238 Query: 228 ----GLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLV 283 L+A+ Q L ++A +GC+G+ R+D++LD+ FY+LE NT PG T SL+ Sbjct: 239 CDVGFLDAALYDKAQELAIEAHNAIGCRGFSRVDILLDNKNDFYILEVNTIPGFTEKSLL 298 Query: 284 PMAARQAGMSFSQLVVRILELAD 306 PMAAR A +SF+ L +I++LA Sbjct: 299 PMAARAADISFTSLCEKIVDLAS 321 >UniRef50_Q6LQQ8 Hypothetical D-alanine-D-alanine ligase B n=3 Tax=Photobacterium RepID=Q6LQQ8_PHOPR Length = 308 Score = 360 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 135/303 (44%), Positives = 201/303 (66%), Gaps = 5/303 (1%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 +I VLLGG S+ER VSL SG V+ + G +A +DPK +DVT + KVFIAL Sbjct: 5 MRIGVLLGGESSERSVSLKSGECVVKAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIAL 64 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GE G +Q +L+L+ +PYTGSG +ASA+S++KL SK +WQ L A WV L + Sbjct: 65 HGGIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKH-- 122 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + A++S++ PV+VKP +G S+G+SKV L +A+ AF++D+++LIE + Sbjct: 123 --APIEDIKAQLSSVVCPVVVKPISQGCSIGVSKVDNNADLLEAVITAFEYDDDILIESF 180 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 ++G E+T A+L + LP ++I+ F+DY+AK+ S Y CP+ L + QE ++QAL L Sbjct: 181 IAGREYTCAVLNGKPLPIVQIRS-EQFFDYDAKFGSQSATYHCPSDLTSEQERDMQALAL 239 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ LGC+GWGR+D +LD G +L+E NT PGMT+ S+ PMAA++AG+SF Q++ +L Sbjct: 240 NAYNALGCRGWGRVDTILDESGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLL 299 Query: 303 ELA 305 + A Sbjct: 300 DSA 302 >UniRef50_B6BWF0 D-alanine--D-alanine ligase n=1 Tax=beta proteobacterium KB13 RepID=B6BWF0_9PROT Length = 299 Score = 360 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 123/302 (40%), Positives = 177/302 (58%), Gaps = 8/302 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 KIA+L GG S ER++S+ SG AV L+ + +DP D+ L + + FI L Sbjct: 4 KKIALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLIDPINTDLCSL--VNYDAAFICL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG+ GEDG +Q +LEL+ +P+TGS AS L+M+K SKL+W L ++ L + Sbjct: 62 HGKNGEDGKIQSLLELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLILNKTNL 121 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + I+ L P IVKPS GSS G++ V ++ L A A ++D V+ E++ Sbjct: 122 D------YKKIITHLSDPFIVKPSSSGSSFGINLVKNKDDLILAFTDASKYDPTVIAEEF 175 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G EFTV+ILG + L + I FYDY AKY+S+ET + P L ++ + L Sbjct: 176 IEGREFTVSILGNKSLGVLEITTKNEFYDYNAKYVSNETIFSKPTDLNPEVLEKMENIAL 235 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ ++GC GWGR+D M+D FYL+E NT PGMT HSL P+AAR AG++F Q V I+ Sbjct: 236 SAFISIGCSGWGRVDFMMDKKFNFYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQHIV 295 Query: 303 EL 304 +L Sbjct: 296 DL 297 >UniRef50_A1U3F6 D-alanine--D-alanine ligase n=43 Tax=Proteobacteria RepID=DDL_MARAV Length = 325 Score = 359 bits (923), Expect = 6e-98, Method: Composition-based stats. Identities = 155/300 (51%), Positives = 206/300 (68%), Gaps = 7/300 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AV +GG SAEREVSL SG AVLA L+ GIDA D + + + F +VFIALH Sbjct: 24 RVAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDIQGCLLRTVDEPDFDRVFIALH 83 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDGTLQ +L G+PYTGS V+ASAL+MDKLR+K +++G GLP + A+T Sbjct: 84 GRGGEDGTLQAILGQAGIPYTGSEVLASALAMDKLRTKYVFEGCGLPTPAFRAMTS---- 139 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + ++ALG P+ VKP+ EGSS+G+ KV + L +A A + D+ VL+E+W+ Sbjct: 140 ---VGEAEGIVAALGTPLSVKPAHEGSSIGIRKVNSAAELAEAYEAAARLDDLVLVEQWI 196 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 GPEFTV++L ++ LP+I + FYDY+AKYL+D+T+Y P GL E LQ L L Sbjct: 197 EGPEFTVSLLQDKALPAIGLSTDHAFYDYDAKYLADDTRYRIPCGLAPDDELRLQHLALD 256 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ LGC+ WGR+D+M D G+F+LLE NT PGMT HSLVPMAA+ AG+SF +LVVRIL Sbjct: 257 AFRVLGCRTWGRVDIMQDRAGEFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILR 316 >UniRef50_Q1IWG9 D-alanine--D-alanine ligase n=6 Tax=Deinococci RepID=DDL_DEIGD Length = 339 Score = 359 bits (923), Expect = 6e-98, Method: Composition-based stats. Identities = 120/336 (35%), Positives = 163/336 (48%), Gaps = 32/336 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP--------------------- 39 M +I +L GG S E EVSL S +VLA L D P Sbjct: 1 MKKRILLLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALET 60 Query: 40 ----VDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSM 95 V + G+ VF LHG GEDGT+QG+L L G+P+ GSGV+ SA+SM Sbjct: 61 GEAVRGGDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSM 120 Query: 96 DKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 155 DK+ +K + G+P W R E+++ + A LG P+ VKP+ GSSVG+S Sbjct: 121 DKVMTKQVLASVGMPQVAWRLAVRREWQE-RPQEVRARAGELGYPLFVKPANLGSSVGIS 179 Query: 156 KVVAENALQDALRLAFQHDEEVLIEK--WLSGPEFTVAILGEE---ILPSIRIQPSGTFY 210 KV L+ AL LAF V++E E V ILG + P ++ FY Sbjct: 180 KVSGPGELERALDLAFSLGRRVILEAMTAHKPRELEVGILGNDAPIASPVGELRFEADFY 239 Query: 211 DYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM-LDSDGQFYLL 269 DYE KY PA L ++ L L A+ TL C G R+D ++ G+ +L Sbjct: 240 DYETKYTEGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFLN 299 Query: 270 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 E NT PG T+ S+ P AG+S+S+LV R++ELA Sbjct: 300 EVNTMPGFTTTSMYPKLFEAAGLSYSELVTRLVELA 335 >UniRef50_D1CCJ4 D-alanine/D-alanine ligase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCJ4_THET1 Length = 362 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 167/344 (48%), Gaps = 39/344 (11%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGF---- 55 M ++ +L GG SAE +VS+ S +++ L++ ID P ++ Sbjct: 1 MKRYRLLLLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLA 60 Query: 56 -------------------------------QKVFIALHGRGGEDGTLQGMLELMGLPYT 84 VF LHG GEDGT+QG LEL+ +PY Sbjct: 61 SSALFAGDSDVRDIVPVDSQPRSVPEALSAVDVVFPLLHGPYGEDGTVQGFLELVNVPYV 120 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 GSGV+ S+LSMDK+ K +++ GLP+ ++ + R+++ S L PV VK Sbjct: 121 GSGVLGSSLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGIISKIESELEYPVFVK 180 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSI 201 P+ GSS+G++K ++L AL LA ++D +++E+ + E A+LG Sbjct: 181 PANLGSSIGITKAKDRSSLLQALELASKYDRRLIVEQGVEARELECAVLGNDYPRASVVG 240 Query: 202 RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD 261 I P FY +EAKY+S+ ++ PA + S ++ ++A+ + G R+D L Sbjct: 241 EILPGDEFYTFEAKYISESSKTIIPADIPPSVSDEIRDYAVRAFKAVDAAGLARVDFFLT 300 Query: 262 SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 S+ + + E NT PG T S+ P +G+S+ LV ++L+LA Sbjct: 301 SENKVLVNEINTIPGFTPISMYPKLWEASGLSYPDLVRKLLDLA 344 >UniRef50_B9XIG4 D-alanine/D-alanine ligase n=2 Tax=bacterium Ellin514 RepID=B9XIG4_9BACT Length = 304 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 119/307 (38%), Positives = 172/307 (56%), Gaps = 13/307 (4%) Query: 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKV 58 M+ KI V+LGG SAEREVSL +G AV LR G +DPKE + G + V Sbjct: 6 MSKILKITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSL--PAGTEVV 63 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F+ALHG GEDGT+Q L+ +G+PYTG AS L DK+ +K AG+P A ++ Sbjct: 64 FLALHGTYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFE 123 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 PV++KP R+GSSVG+ V L A ++D +VL Sbjct: 124 SRS---------AVWPMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEALRYDTQVL 174 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 +E+ + G E TV ILG LP + ++P YDY+ KY + T+Y CPA + + A +Q Sbjct: 175 MEERILGRETTVGILGNRPLPIVEVRPKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQ 234 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 L A+ +G + + R+DVM+ +G+ +LE NT PGMT SL+P AA AG+ +++L Sbjct: 235 EAALGAFKAIGGRDYSRVDVMVRPNGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELC 294 Query: 299 VRILELA 305 ++++LA Sbjct: 295 QQMVDLA 301 >UniRef50_D1XE41 D-alanine/D-alanine ligase n=2 Tax=Streptomyces RepID=D1XE41_9ACTO Length = 401 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 112/363 (30%), Positives = 166/363 (45%), Gaps = 60/363 (16%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGF------ 55 ++AV+ GG S+E +S+ + AV++ L D P+ L + Sbjct: 32 KPRVAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAIS 91 Query: 56 --------------------------------------------QKVFIALHGRGGEDGT 71 VF LHG GEDGT Sbjct: 92 DRQVPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGT 151 Query: 72 LQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD--- 128 LQG LEL G+PY G+GV+ASA+ DK K ++ GLPV P+ + E+E Sbjct: 152 LQGFLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARK 211 Query: 129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEF 188 + + + G P+ VKP+R GSS+G++KV + L +A+ A +HD + L+E L G E Sbjct: 212 RIMEFAAEHGWPLFVKPARGGSSMGITKVDDPSGLDEAIEEARRHDPKFLVESLLRGREI 271 Query: 189 TVAILGEEILP----SIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 +L E P I P + FYD+EAKY+ D PA L Q A ++ L + Sbjct: 272 ECGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYI-DSAAGLVPAPLTEEQTAEVRRLAV 330 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ C+G R D L DG F + E NT PG T S+ P +++G+S+ +LV R++ Sbjct: 331 DAFEAASCEGLVRADFFLTEDGTFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLI 390 Query: 303 ELA 305 + A Sbjct: 391 QAA 393 >UniRef50_B0VIQ4 D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VIQ4_9BACT Length = 314 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 127/309 (41%), Positives = 176/309 (56%), Gaps = 7/309 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-----VDVTQLKSMGFQK 57 +KI VL GGTS EREVSL SGA + + LR G +DP + +T +++ Sbjct: 2 EKIVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEIDPADYPKLSDLLTAVQNEQPLL 61 Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 VF LHG GE+G LQ L L G+ +TGSG AS SMDK SKL+ G+PV ++ + Sbjct: 62 VFNGLHGGSGENGELQAALSLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILM 121 Query: 118 TRAEFEKGLS-DKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 E + + LGLP+IVKP+ GSSVG+S+V L+ A++ A Q+ Sbjct: 122 REDLLEDYQDVEDYSGFSNQLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSHS 181 Query: 177 VLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 VL+E+++ G E TV I+ E P + I+P +YDY KY +T+Y PA ++ + Sbjct: 182 VLLEEYIPGRELTVTIIDSEAYPVVEIKPLEGWYDYTNKYTHGKTKYEAPAQIDDTVAKL 241 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 LQ L+ W G G+ RID D + Y LE NT PGMTS SL PMAA+ AGMSF + Sbjct: 242 LQLYALRLWKAFGLSGYARIDFRYDGL-KPYFLEVNTLPGMTSLSLTPMAAKAAGMSFQE 300 Query: 297 LVVRILELA 305 L+ +I+ +A Sbjct: 301 LLQKIIYIA 309 >UniRef50_D0KXY6 D-alanine/D-alanine ligase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXY6_HALNC Length = 324 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 136/303 (44%), Positives = 197/303 (65%), Gaps = 12/303 (3%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL----KSMGFQKVF 59 ++ +LLGG S+ER +SL SG VL L+ GID +D + + +L ++ F + F Sbjct: 9 RVLLLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRDFLPELLAAHQAKPFDRAF 68 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 I LHGRGGEDG +Q +LEL+G+PYTG+ + SA+ MDKL K +W+G GLP PW + Sbjct: 69 IILHGRGGEDGQIQAVLELLGIPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVV-- 126 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 + + +LGLPV+VKP EGSSVG++KV + L A R A ++ + V++ Sbjct: 127 -----ATEIEAHRALDSLGLPVMVKPVAEGSSVGVAKVDQPDQLAAAFREAARYGQ-VMM 180 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 E+++ G E+TV++LG LP IR+ FYD++AKYL+++T+Y P+GL A +E+ +QA Sbjct: 181 ERYIRGGEYTVSLLGGRALPVIRLSTPHDFYDFDAKYLANDTEYTIPSGLSAEEESAMQA 240 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + LKA+ +G GWGR+D M D GQ +L+E NT PGMT HSLVPMAAR G+ +L + Sbjct: 241 IALKAFEQIGGSGWGRVDFMRDEHGQNWLIEVNTVPGMTDHSLVPMAARAVGIEIEELCL 300 Query: 300 RIL 302 IL Sbjct: 301 GIL 303 >UniRef50_A6VYJ6 D-alanine--D-alanine ligase n=2 Tax=Marinomonas RepID=DDL_MARMS Length = 317 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 138/308 (44%), Positives = 189/308 (61%), Gaps = 14/308 (4%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD-----PKEVDVTQLKSMGFQKVF 59 IAV+ GG SAEREVSL SG V GLR G +D + QL+S+ F F Sbjct: 10 IAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDLYGSNAALDPIVQLQSIEFDLAF 69 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG GEDG +Q +LE+ G PYTGS +A L+MDK+ +K W G G+P +++ Sbjct: 70 IALHGGEGEDGRVQALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIPTPAYLSF-- 127 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 + PVIVKPSREGS++G++K + L DAL A ++D ++L+ Sbjct: 128 -----VDHANADLIEEQMSYPVIVKPSREGSTIGINKAMNRAELDDALIKALEYDSDILV 182 Query: 180 EKWLSGPEFTVAILGEEILPSIRI--QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 E+++ GPEFTV ++ + P I + P YDYEAKY++D+T+Y P GL+ E L Sbjct: 183 EEFIDGPEFTVTVIDDVAYPPIGLKPAPDHKLYDYEAKYIADDTEYLLPCGLDEDDENEL 242 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 Q L L A+ +LGC GWGR+DVM D G F++LE NT+PGMTSHSLVPMAA+ G+ ++ L Sbjct: 243 QMLALDAYRSLGCFGWGRVDVMRDQAGVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASL 302 Query: 298 VVRILELA 305 V +I + A Sbjct: 303 VEKIAQNA 310 >UniRef50_A7X4R6 D-alanine--D-alanine ligase n=64 Tax=Bacillales RepID=DDL_STAA1 Length = 356 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 107/339 (31%), Positives = 173/339 (51%), Gaps = 35/339 (10%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA------------------------ 37 + I ++ GG SAE EVS+ + VL + + Sbjct: 3 KENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKST 62 Query: 38 ---YPVDPKEVDVTQLKS-----MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 + + + ++++QL + VF LHG GEDGT+QG+ E++ +PY G+GV+ Sbjct: 63 DELHLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVL 122 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 ++A SMDKL K L++ GLP P+++ R+E+EK + L PV VKP+ G Sbjct: 123 SAASSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLG 182 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPS 206 SSVG+SK E L++ ++ AFQ D +++IE+ ++ E VA+LG E + Sbjct: 183 SSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKD 242 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 FYDY++KY + Q PA L+ + L+ + L+A+ C G R D + D Q Sbjct: 243 VAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTEDNQI 302 Query: 267 YLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 Y+ E N PG T+ S+ P G+S+ +L+ +++ELA Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341 >UniRef50_B9ZKY4 D-alanine/D-alanine ligase n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKY4_9GAMM Length = 313 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 147/303 (48%), Positives = 196/303 (64%), Gaps = 8/303 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL+GG S ER++SL SG AVLA LR G+DA+ VD + G+ +VFIALH Sbjct: 11 RVAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRETARCMALEGYDRVFIALH 70 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDGTLQG L++ G+PYTG+GV+ SAL MDKL K LW G LP AP+ LT Sbjct: 71 GECGEDGTLQGCLDMGGMPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLTPGFDP 130 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + ++D LGLP+IVKP+R GSS+G+++V L A A +V E+W+ Sbjct: 131 EAVADA-------LGLPLIVKPARGGSSLGITRVDRVADLPAAFEAARVQPGQVFAEQWI 183 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAG-LEASQEANLQALVL 242 +G EFTVA+LG E LP I I+ + FYDY AKY +D+T Y CP L S + LQ+L + Sbjct: 184 TGREFTVAVLGNEPLPVIEIRAASGFYDYHAKYEADDTGYLCPPPDLSRSAQLELQSLAI 243 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ L GWGR+D++ D G+ +L+E NT PGMT HSLVP AA QAG+ F +L +RIL Sbjct: 244 AAFAALEGCGWGRVDILQDEHGENFLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRIL 303 Query: 303 ELA 305 + + Sbjct: 304 DSS 306 >UniRef50_A9B406 D-alanine--D-alanine ligase n=2 Tax=Chloroflexi (class) RepID=DDL_HERA2 Length = 361 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 158/350 (45%), Gaps = 46/350 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE--------VDVTQLKSM 53 ++ ++ GG S E EVSL S AV+ L P+ + L+ Sbjct: 3 KRRVGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRNGQWLSGGDPLLALEQQ 62 Query: 54 G----------------------------------FQKVFIALHGRGGEDGTLQGMLELM 79 + LHG GEDGT+QG+ E Sbjct: 63 ADQKMLGRTPQAGVVSETAIVQSAGSLPEQTNVAALDVIIPVLHGPFGEDGTIQGVFEFA 122 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 LPY G GV+A+++ MDK K + AGLP PW + R +++ + L Sbjct: 123 NLPYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEATLHY 182 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---E 196 P+ VKP+ GSSVG+SKV L + A +D +++E+ ++ E VAILG + Sbjct: 183 PMFVKPANLGSSVGISKVSNRAELATGMAEAAGYDRRIVVEQGINAREIEVAILGNDDPK 242 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 + P+ FYDY KYL +TQ+ PA L+A+ L+ + + A+ + G R+ Sbjct: 243 PSVPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQLREMAVTAFKAIDGAGLARV 302 Query: 257 DVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D ++ + G Y+ E NT PG T+ S P G+ +S+L+ R+++LA Sbjct: 303 DFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELLDRLIDLA 352 >UniRef50_D0LIX2 D-alanine/D-alanine ligase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIX2_HALO1 Length = 330 Score = 356 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 127/303 (41%), Positives = 180/303 (59%), Gaps = 8/303 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD--PKEVDVTQLKSMGFQKVFI 60 ++ VL GG S+EREVSL SGA VLA L+E G + VD P L + V+ Sbjct: 24 RRVGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVDWTPGSSLPALLVEHRVEVVWN 83 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GEDG +QG+ MGLP TG+ + ASA++MDK+ SK L++ G+P W L Sbjct: 84 ALHGTYGEDGAVQGLCACMGLPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRPD 143 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 E + A + LP+++KP+ EGSSVG+S V + + AL+ A VL+E Sbjct: 144 EGDTA------AVFAEWALPLVIKPAYEGSSVGLSLVRERDEIGPALKRARAGQGPVLVE 197 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 +++ G E +V IL + +L ++ I+P+ YDYEAKY+ D+T + P LE +AL Sbjct: 198 RYIEGVELSVGILADRVLGAVEIRPTSGLYDYEAKYVRDDTAFLVPPELERGHIDTCEAL 257 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L+A+ LGC G+ R D+ + +DG ++LE NT PGMTSHSL+P A AG+ + L R Sbjct: 258 GLRAYHALGCTGYARADLRVQADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCER 317 Query: 301 ILE 303 ILE Sbjct: 318 ILE 320 >UniRef50_C7N496 D-alanine--D-alanine ligase n=3 Tax=Coriobacteriaceae RepID=C7N496_SLAHD Length = 317 Score = 356 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 126/307 (41%), Positives = 186/307 (60%), Gaps = 7/307 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-VDVTQLKSMGFQKVFIAL 62 +AVL GG S EREVSLNSG A L G + +D E D+ +L F F+AL Sbjct: 11 NVAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLDTAEKADLKRLIDEPFDVAFLAL 70 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGRGGEDGT+QG LE +G+PYTGSG+ AS+++++K ++K + AGL VA + ++ + Sbjct: 71 HGRGGEDGTIQGFLETVGIPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDI 130 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + + G+P +VKP+ EGSS+GM+ V + +A++ A D E ++E++ Sbjct: 131 LD--ENLISDIVETCGIPCVVKPTTEGSSLGMTIVRDAADIAEAIKTALAVDVEAMVEQF 188 Query: 183 LSGPEFTVAILGE---EILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 +SG E TV ++G E LP I+I P FY+Y AKY + +++ CPA + N Q Sbjct: 189 ISGTELTVGVIGNDDAEALPVIQIVPTEDEFYNYHAKYAAGGSRHLCPAPVSRDVTENAQ 248 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 + + A LGC+G R D+++D+D ++LE NT PGMT SLVP AA+ AGM F QL Sbjct: 249 EMAVAAHMVLGCRGVSRTDIIVDADDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQLC 308 Query: 299 VRILELA 305 +++ LA Sbjct: 309 EKLIALA 315 >UniRef50_B1GYM6 D-alanine-D-alanine ligase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYM6_UNCTG Length = 306 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 112/304 (36%), Positives = 171/304 (56%), Gaps = 10/304 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 KI VL GG S+ERE+S+ SG AVL ++ ++ +D ++K +IA Sbjct: 12 NKKIGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNRSIAEEIKKEKIDVAYIA 71 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDGT+QGMLE++G+PYTGSG+ ASA S+DK SK +++ A + W L + Sbjct: 72 LHGPMGEDGTIQGMLEILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKKFG 131 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + PV+VKP +GS++G++ V + A++ F++ +E LIE+ Sbjct: 132 TVPEIK----------KYPVVVKPVSQGSTIGVAIVKRPSEFAAAVKEVFKYGDEALIEQ 181 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 ++ G E TV +L + LP + I P G FYD++AKY +Q+ PAG+ +Q Sbjct: 182 FIEGKEVTVGVLNGKALPVVEIVPKGKFYDFKAKYQKGGSQHIIPAGISEEAYETVQNYA 241 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 K + C+ R+D+++D + ++ E NT PGMT SLVP +R G SF LV++I Sbjct: 242 EKVYEIFKCRAICRVDMIVDRKDRVWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKI 301 Query: 302 LELA 305 E A Sbjct: 302 TESA 305 >UniRef50_O66806 D-alanine--D-alanine ligase n=3 Tax=Aquificaceae RepID=DDL_AQUAE Length = 291 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 115/300 (38%), Positives = 169/300 (56%), Gaps = 10/300 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 ++ VL+GG S+ERE+SL +G AV LRE G + Y +D + +L + KVFIAL Sbjct: 1 MRVVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEIKPDKVFIAL 60 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGR GEDGT+QG+LE++ +PYTGS +ASA+S+DK +K + + G+ W Sbjct: 61 HGRYGEDGTVQGLLEILDIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETF----- 115 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 +S+ + P +VKP REGSSVG+ V + L++ + E V++E++ Sbjct: 116 ---ISEGDVLNTEWNKFPAVVKPVREGSSVGLKIVESLEELKEYALDLLKKTERVMVEEF 172 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G + TV IL E LP + I P YDYE KY ++Y + LQ + L Sbjct: 173 VEGRDMTVGILKGEALPVVEIIPKKGVYDYECKYTKGMSEYRI--LKDEKLSKKLQEISL 230 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 K L K + RID + +G+ + LE NT PGMT SL+PMAA++ GM F +L+ I+ Sbjct: 231 KISKFLSLKDFARIDFRVTKEGKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290 >UniRef50_B9YQN3 D-alanine/D-alanine ligase n=5 Tax=Bacteria RepID=B9YQN3_ANAAZ Length = 394 Score = 355 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 155/343 (45%), Gaps = 39/343 (11%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREG----GIDAYPVDPKEVDVTQL------- 50 ++ +L GG S E EVS+ S + L + P ++ Q Sbjct: 46 KLRVGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQQV 105 Query: 51 ---------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 ++ F LHG GEDGT+Q +L LM +P+ GSGV+ Sbjct: 106 LTSGVAKEHPGNRANLWQFPPQTAEIDLWFPILHGPNGEDGTIQALLTLMQVPFVGSGVL 165 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGL---SDKQLAEISALGLPVIVKPS 146 SA MDK+ K + AGLP + ALTRA+ + LG P VKP+ Sbjct: 166 GSATGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCVFPKLCDEIEATLGYPYFVKPA 225 Query: 147 REGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRI 203 GSSVG++KV + L+ AL A +D +++E + E A+LG + I Sbjct: 226 NLGSSVGIAKVQSRQELEAALDNAATYDRRIIVEAGVVAREVECAVLGNDNPKASVIGEI 285 Query: 204 QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM-LDS 262 FYDYE KY + F PA L S +Q L+A+T + G R+D +++ Sbjct: 286 TFDSDFYDYETKYTQGKADLFIPAHLPESAVQQIQEKALQAFTAVDAAGLARVDFFYVEA 345 Query: 263 DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G+ + E NT PG TS S+ P G+SF +LV ++++LA Sbjct: 346 TGEILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQLIQLA 388 >UniRef50_D1R6P1 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R6P1_9CHLA Length = 788 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 105/322 (32%), Positives = 148/322 (45%), Gaps = 21/322 (6%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM-------- 53 I +L GG S E EVSL S + L + + + LK+ Sbjct: 452 KLHIGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNEGDSEEFLI 511 Query: 54 ---------GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLW 104 +F LHG GEDGT+QG LE++G PY G +SA+ MDK +K L Sbjct: 512 SSQVLQQLQKCDLLFPILHGTFGEDGTIQGFLEILGKPYVGCDHQSSAICMDKAIAKRLM 571 Query: 105 QGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQ 164 Q AG+ + ++A + +++ D L P+ VKP GSS+G+ +V E L Sbjct: 572 QHAGIQTSSFIAFSETDWKNRAKDLLHEIREKLIFPIFVKPVHLGSSIGVQRVTNETELD 631 Query: 165 DALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDET 221 A+R AF D +L+E ++G E A+LG + +LP + +G +DY KY D Sbjct: 632 AAIRNAFAFDPVILVENEIAGREIEFAVLGNDQITVLPPGEVFSAGKIHDYRGKYSRDNA 691 Query: 222 QYFCP-AGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSH 280 P A L +A+ LKA+ CKG RID LD G F+ E N PG T Sbjct: 692 TPSTPQADLPEKWMEEGKAIALKAYQAATCKGMARIDFFLDQSGSFWFNEINPIPGFTPF 751 Query: 281 SLVPMAARQAGMSFSQLVVRIL 302 SL P G S +L+ R+L Sbjct: 752 SLYPQMCEANGFSNEELIDRLL 773 >UniRef50_B7A6N0 D-alanine/D-alanine ligase n=2 Tax=Thermaceae RepID=B7A6N0_THEAQ Length = 321 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 121/331 (36%), Positives = 164/331 (49%), Gaps = 38/331 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLA----------------------GLREGGIDAY 38 M ++ ++ GG S E EVSL S VL LR Sbjct: 1 MEIRVLLIAGGKSPEHEVSLASAEGVLKHMPFPTELAVIAKDGAWLLGEEALRALEAKVA 60 Query: 39 PVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKL 98 P L + VF LHG GEDGT+QG LE++G PY G+GV SAL MDK Sbjct: 61 PKGEHPFPPP-LDWDRYGVVFPLLHGPMGEDGTIQGFLEMLGKPYVGAGVAGSALCMDKD 119 Query: 99 RSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVV 158 SK + AG+PV PWVAL R E + P VKP+ GSS+G+S+V Sbjct: 120 FSKRVLAQAGIPVVPWVALYRGETPLVPFE----------PPFFVKPANTGSSIGISRVE 169 Query: 159 AENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILGE---EILPSIRIQPSGTFYDYEA 214 L++AL AF+HD + ++EK LSG E V +LG E P ++ FYDYE Sbjct: 170 RYADLEEALEEAFRHDRKAVVEKALSGVRELEVGVLGNVFGEASPVGEVRYEAPFYDYET 229 Query: 215 KYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTS 274 KY + PA L+ E +Q + LKA+ LG +G R+D L ++G+ YL E NT Sbjct: 230 KYTPGRAELLIPAPLDPGTEETVQEMALKAYKVLGLRGMARVDFFL-AEGELYLNEVNTI 288 Query: 275 PGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 PG T S+ P G+++ +L+ R++ELA Sbjct: 289 PGFTPTSMFPRLFLAKGLTYPELLRRLVELA 319 >UniRef50_B5YDR1 D-alanine--D-alanine ligase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YDR1_DICT6 Length = 311 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 170/306 (55%), Gaps = 4/306 (1%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 KI VL+G S+E+E++ + ++ L+ G D + E V +K I+ Sbjct: 1 MKIGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKANINVAIISA 60 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG+ GEDGT+QG+LEL+G+PY GSGV+ASAL++DK +K ++ +P W+ L++ E Sbjct: 61 HGKYGEDGTIQGLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKEL 120 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 E + + +S L P I+KP+ +GS++G+S E L + LAF++DE ++IE++ Sbjct: 121 ETKDLNNIVKNVSKLKKPWIIKPATQGSTIGLSLASTEEELLKGIELAFKYDENIIIEEY 180 Query: 183 LSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 + G E T I LP I I P FYDYE KY + + PA L Q Sbjct: 181 IKGKEITAGIYDINNPVCLPLIEIIPKTGFYDYETKYTPGLSDHIIPARLPKEVYEKAQG 240 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 L + A LGC+ R+D++++ + Y+LE NT PGMT SL P AA+ G+ F +L+ Sbjct: 241 LGILAHQALGCRHLSRVDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFPELI 300 Query: 299 VRILEL 304 ++ Sbjct: 301 DSFIKA 306 >UniRef50_B1VYZ5 D-alanine--D-alanine ligase n=32 Tax=Actinomycetales RepID=DDL_STRGG Length = 391 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 109/363 (30%), Positives = 166/363 (45%), Gaps = 60/363 (16%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGF------ 55 ++AV+ GG S+E +S+ + AV+ + D P+ L + Sbjct: 22 KPRVAVVFGGRSSEHGISVVTAGAVMRAIDRTTYDVLPIGITTDGRWALTADEPERMAIT 81 Query: 56 --------------------------------------------QKVFIALHGRGGEDGT 71 VF LHG GEDGT Sbjct: 82 DRKVPDVDRLTESAEGSVVLSVDPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGT 141 Query: 72 LQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLS---D 128 LQG+LEL G+PY G+GV+ASA+ DK K ++ GLPV P+ + E++ + + Sbjct: 142 LQGLLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYEVVRPREWDNDPAAARE 201 Query: 129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEF 188 + + G P+ +KP+R GSS+G++KV + L A+ A +HD + L+E L G E Sbjct: 202 RIVDFAGEHGWPLFIKPARGGSSMGITKVDSVEGLDAAIEEARRHDPKFLVESLLRGREI 261 Query: 189 TVAILGEEILP----SIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 +L E P I P S FYD+EAKY+ D PA L Q A ++ L + Sbjct: 262 ECGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYI-DSAAGLVPAPLTEEQTAEVRRLAV 320 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ + C+G R D L DG F + E NT PG T S+ P +++G+ + +LV R++ Sbjct: 321 AAFDAVSCEGLVRADFFLTEDGTFVINEINTLPGFTPISMYPRMWQESGVDYPELVDRLI 380 Query: 303 ELA 305 + A Sbjct: 381 QAA 383 >UniRef50_Q15Q19 D-alanine--D-alanine ligase n=5 Tax=Proteobacteria RepID=DDL_PSEA6 Length = 318 Score = 353 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 156/302 (51%), Positives = 208/302 (68%), Gaps = 3/302 (0%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AV+ GG SAEREVSL SG AVL+ L G++A+ DP E ++ QL F +V I LH Sbjct: 19 KVAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFDPAESELHQLVEQKFDRVLIMLH 78 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GRGGEDG+LQG L+ M +PYTG+GV+ SAL MDK+RSK +WQ GLP A + + +F Sbjct: 79 GRGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFN 138 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + +S LG V+VKP++EGSS+GM+KV L A++ AF++D++VL+E+++ Sbjct: 139 ---AANCSDIMSRLGDLVMVKPAQEGSSIGMAKVSNAQQLAAAIQQAFEYDDKVLLEQFI 195 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E+TV++L E +PSI + FYDYEAKY S+ T+YFCP+GL A QE L L L Sbjct: 196 QGSEYTVSLLNGEAMPSISMSTPRDFYDYEAKYQSNTTEYFCPSGLPAEQEGLLARLALD 255 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ + GWGR+D M D GQFYLLEANT PGMT SLVP+AA+QAG+SF QL + +L Sbjct: 256 AFDAVAGSGWGRVDFMQDMLGQFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVLA 315 Query: 304 LA 305 A Sbjct: 316 TA 317 >UniRef50_C1ZD72 D-alanine--D-alanine ligase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD72_PLALI Length = 338 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 127/302 (42%), Positives = 171/302 (56%), Gaps = 4/302 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 IA+L GG S ER +SL SG AV L+E G P+DP V + + GF VFIALH Sbjct: 17 NIALLAGGDSDERSISLRSGQAVCQALQERGHFILPIDPAIVSLKGMDWNGFDAVFIALH 76 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +Q +LE G+PYTGS AS L+ DK +K + +P W L+ E Sbjct: 77 GRFGEDGGVQTLLEESGIPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELSPHE-- 134 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 D L + LG PV++KP+ +GSS+G+S V LQ A A +DE +++E + Sbjct: 135 --SFDSLLMKAKELGWPVVIKPASQGSSLGVSIVRQPEQLQSAYERARHYDEALIMEAAI 192 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E+TV + +EILP I I+ F+D+ AKY D T+Y L A+ L+ Sbjct: 193 VGSEWTVGLHDDEILPPICIETDREFFDWVAKYEDDHTRYIFDKPLPATCRQKLETACRG 252 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A LG G R+D+MLDS+G ++LE NT PG+T HSLVP AA+QAG S +L + Sbjct: 253 AVHALGVTGISRVDLMLDSEGNPWVLEINTIPGLTDHSLVPKAAQQAGWSLGELCEESIH 312 Query: 304 LA 305 A Sbjct: 313 RA 314 >UniRef50_Q89GA7 D-alanine--D-alanine ligase A n=1 Tax=Bradyrhizobium japonicum RepID=DDLA_BRAJA Length = 373 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 122/354 (34%), Positives = 175/354 (49%), Gaps = 50/354 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG------- 54 ++ VL GG S E EVSL S A+V L + PV + Q + Sbjct: 4 KIRVVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQAHA 63 Query: 55 ------------------------------------FQKVFIALHGRGGEDGTLQGMLEL 78 VF +HG EDGT+QG+LEL Sbjct: 64 AALPILPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGLLEL 123 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 + Y GSGV+ASA+SMDK +K L + AG+PVAP+ LTR F + + L Sbjct: 124 ADVAYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVEGLS 183 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 LPV VKP GSSVG+ KV ++AL+ AL AF++D +VL+++ + E VA+L +E L Sbjct: 184 LPVFVKPCNMGSSVGIHKVKTQDALEAALDDAFRYDVKVLVQQGIDAREIEVAVLEDETL 243 Query: 199 P---SIRIQP--SGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKG 252 + + P FY YEAKYL D + PA L+A+Q +++L + + L C G Sbjct: 244 FASLASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALECSG 303 Query: 253 WGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + R+D LD G+F E NT PG TS S+ P +G+ + +L+ R+++LA Sbjct: 304 FARVDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVDLA 357 >UniRef50_Q6MQ94 D-alanine--D-alanine ligase n=1 Tax=Bdellovibrio bacteriovorus RepID=DDL_BDEBA Length = 365 Score = 352 bits (905), Expect = 7e-96, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 149/351 (42%), Gaps = 52/351 (14%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------------- 45 M +A++ GG SAE EVSL S V L + + + Sbjct: 3 MKKIVALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEA 62 Query: 46 ---------------------------DVTQLKSMGFQKVFIALHGRGGEDGTLQGMLEL 78 + F LHG GEDGT+QG+ ++ Sbjct: 63 TKIVDSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKM 122 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 + LP+ G GV +SA MDK K L A +P A ++ LT + + LG Sbjct: 123 VQLPFVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKNDYNE-----IVKELG 177 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 P +KP+ GSSVG+ K+ L+ AFQ D +VL E+++ G E +++G Sbjct: 178 SPFFIKPANAGSSVGVHKIKTAEDFVVKLKDAFQFDTKVLAEEFIQGREVECSVMGHNHA 237 Query: 199 P----SIRIQPSGTFYDYEAKYLSD-ETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 P + P FY YEAKY+ D PA L +Q + + + +GC G Sbjct: 238 PKASLPGEVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGL 297 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 R+D + +G+ Y+ E NT PG T S+ P +G+S+ L+ ++++L Sbjct: 298 TRVDFFIRPNGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQL 348 >UniRef50_Q1ATM1 D-alanine--D-alanine ligase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ATM1_RUBXD Length = 318 Score = 351 bits (902), Expect = 1e-95, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 175/308 (56%), Gaps = 7/308 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 ++AVL GG S ER+VSL +G V L G + +P+D +E +L + VF+ LH Sbjct: 3 RLAVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERLIELEPAAVFVCLH 62 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA-LTRAEF 122 G GGEDGT+Q +LE +G+PYTGSG ++S MDK +K AGLP + + RA Sbjct: 63 GPGGEDGTVQALLETLGIPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMN 122 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 E G + +LG P++VKP+REGSS G+S+V L DA+ AF +D ++L+E+W Sbjct: 123 EMGAAAALNVAADSLGYPLVVKPAREGSSFGLSRVERPEELLDAVYEAFGYDAKILLERW 182 Query: 183 LSGPEFTVAIL-----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 + G E +V IL L + I+P Y+++AKY T + PA L + L Sbjct: 183 VEGREVSVPILEPAGEAPRALGLVEIRPREGAYNFQAKYTPGMTDFAIPAELPPGTASRL 242 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 + L + TLGC G+ R+D +++ + +L+ T PG T S P+AA AG+SF +L Sbjct: 243 EETALAVYRTLGCSGFARVDTIVEGE-TPQVLDVKTIPGFTETSTFPLAAEAAGLSFERL 301 Query: 298 VVRILELA 305 V IL+ A Sbjct: 302 VEIILDSA 309 >UniRef50_B3DVV9 D-alanine--D-alanine ligase n=1 Tax=Methylacidiphilum infernorum V4 RepID=DDL_METI4 Length = 303 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 113/303 (37%), Positives = 163/303 (53%), Gaps = 14/303 (4%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 IAVL GG S ERE+SL + AV L G + +D + F+ + Sbjct: 7 RHIAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDVTTEKFE--IPRDAEICFLCI 64 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDG +Q +L G+P+TGS +S + DK SK L+ G+P P+ + Sbjct: 65 HGSFGEDGQIQRLLMRRGIPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPFCVVGDG-- 122 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + P ++KPSR+GSS+G+ V L A++ + Q+D VL E Sbjct: 123 ----------KKIPFDPPYVIKPSRQGSSIGIEFVYDIKELDQAIKKSTQYDHVVLAEAL 172 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 ++G E TV IL + LP + I+P FYDY KY + YFCPA L Q + +Q L Sbjct: 173 ITGKELTVGILDGKALPVVEIKPKEGFYDYHHKYTKGASTYFCPAPLTVDQTSAVQKTAL 232 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 A+ LGC +GR+D++L +G ++LE NT PGMT SL PMAA+ +GM+F+QL +IL Sbjct: 233 DAFNVLGCSVYGRVDIILSDNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKIL 292 Query: 303 ELA 305 E++ Sbjct: 293 EIS 295 >UniRef50_A8PM76 D-alanine--D-alanine ligase (D-alanylalanine synthetase)(D-Ala-D-Ala ligase) n=1 Tax=Rickettsiella grylli RepID=A8PM76_9COXI Length = 365 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 169/344 (49%), Gaps = 40/344 (11%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE----------------- 44 K+AVL GG SAE E+SL S AAV+ L + P+ + Sbjct: 8 KTKVAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDT 67 Query: 45 --------------VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMA 90 ++ K + VF LHG GEDGT+QG+L+LM + Y G+ V+ Sbjct: 68 ILLETENAQSFSGLAELMVDKKGHYDVVFPVLHGALGEDGTIQGLLDLMDIAYIGADVLG 127 Query: 91 SALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGS 150 SA+ MDK+ SK L A +PV P++A + + S +G P+ +KP GS Sbjct: 128 SAVGMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIGYPLFIKPVNGGS 187 Query: 151 SVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-------ILPSIRI 203 S+G++K+ + L++A+ L F + +VL+EK L E +A+L + + I Sbjct: 188 SLGITKIKKDTDLENAIELVFTYSTKVLVEKALEVREVEIAVLENQKWGAEPYVSQIGEI 247 Query: 204 QPSGTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 P FY YEAKYL ++ Q PA L+ SQ ++ L ++ + L C G RID ++ Sbjct: 248 IPRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDCSGMARIDFFIEK 307 Query: 263 -DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + Y E NT PG T S+ P +G++++ L+ ++ELA Sbjct: 308 RSQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELA 351 >UniRef50_Q9KCF0 D-alanine--D-alanine ligase n=4 Tax=Bacillales RepID=DDL_BACHD Length = 305 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 119/308 (38%), Positives = 181/308 (58%), Gaps = 11/308 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 KIAVL GGTSAEREVSL+SG ++ L+ G + +D V L + VFI L Sbjct: 1 MKIAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQVRDLVDLDVDLVFIGL 60 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGR GEDG +Q +L+L+ +PY G+GV SAL+MDK ++KL ++ AG+ VA V L + Sbjct: 61 HGRLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTY 120 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + + PV+VKP++EGS++G++ E L + AF+HD+ +LIE++ Sbjct: 121 DANAFNFTGT------YPVVVKPNQEGSTIGLTVAETEEELLQGIEEAFRHDDTILIEEF 174 Query: 183 LSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 ++G E TVA+LG + LP + I P YDYE+KY +++ PA + A +Q Sbjct: 175 IAGTEVTVAVLGNKGEERSLPVVEIVPKNKLYDYESKYAPGMSEHIVPARISEEHTAYVQ 234 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDG-QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 ++A LGC + R+D ++ +DG +L+ NT PGMT SL P AA+ GMS+ ++ Sbjct: 235 QAAVRAHQALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEM 294 Query: 298 VVRILELA 305 + + L+ Sbjct: 295 IQTFVNLS 302 >UniRef50_P59435 D-alanine--D-alanine ligase n=3 Tax=Buchnera aphidicola RepID=DDL_BUCBP Length = 309 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 156/305 (51%), Positives = 215/305 (70%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 T+KIAVLLGGTS ER +SL SG +L L + GI A +D K+ +TQL F K FIA Sbjct: 5 TEKIAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAIDTKDFPITQLPHQKFTKAFIA 64 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHGR GEDGT+Q +L+ + +P+TGS + SA+S++K ++KLLWQ LPV P++ + + E Sbjct: 65 LHGRDGEDGTIQSVLKYLNIPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKHE 124 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 F K K IS LGLP+IVKP++EGSS+G++ V + L A + AF D +LIEK Sbjct: 125 FNKKFLQKFKKNISLLGLPIIVKPNQEGSSIGITIVYSYETLYKACKTAFIFDNSILIEK 184 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 ++ G E+T++ILG++ILP IRI P TFY+Y +KYLS+ T YFCP+GL +E L+ + Sbjct: 185 FIYGEEYTISILGKKILPIIRICPENTFYNYNSKYLSNRTTYFCPSGLNKLKELELKKIT 244 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L AW + GWGR+DV++D +F+LLEANT PGMT HSL PM+A++AG+S+ LV +I Sbjct: 245 LTAWNIIDGTGWGRVDVIMDYKNKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQKI 304 Query: 302 LELAD 306 LELA+ Sbjct: 305 LELAN 309 >UniRef50_Q3MGA0 D-alanine--D-alanine ligase n=44 Tax=cellular organisms RepID=DDL_ANAVT Length = 367 Score = 349 bits (896), Expect = 7e-95, Method: Composition-based stats. Identities = 105/357 (29%), Positives = 162/357 (45%), Gaps = 53/357 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGL----REGGIDAYPVDPKEVDVT--------Q 49 ++ +L GG S E EVS++S A+ + L + P + Sbjct: 3 KLRVGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQV 62 Query: 50 LKSMGF----------------------------------QKVFIALHGRGGEDGTLQGM 75 LKS F LHG GEDGT+QG+ Sbjct: 63 LKSGAPLLESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGL 122 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGL---SDKQLA 132 L LM P+ GSGV+ SAL MDK+ K+ ++ AGLP + A+TRA+ Sbjct: 123 LTLMQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDE 182 Query: 133 EISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAI 192 ++LG P VKP+ GSSVG+SKV + L+DAL A +D +++E + E A+ Sbjct: 183 IEASLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIVEAGVVAREVECAV 242 Query: 193 LGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLG 249 LG + I + FYDYE KY + + PA + +Q + L+A+ + Sbjct: 243 LGNDQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAVIPDEISRQIQDMALQAFAAVD 302 Query: 250 CKGWGRIDVM-LDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G R+D +++ G+ + E NT PG T+ S+ P +G+ F +LV ++++LA Sbjct: 303 AAGLARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQLA 359 >UniRef50_A0L5M8 D-alanine--D-alanine ligase n=1 Tax=Magnetococcus sp. MC-1 RepID=DDL_MAGSM Length = 310 Score = 349 bits (896), Expect = 8e-95, Method: Composition-based stats. Identities = 121/304 (39%), Positives = 158/304 (51%), Gaps = 3/304 (0%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 KI VL GG S EREVSL SG A+ L+ G +D L+ G + +AL Sbjct: 6 KKIGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRHITKVLEREGIEVAVLAL 65 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDGT+QG+LE MG+PYTG V ASA+ MDK SK L+ GLP W+ L Sbjct: 66 HGPMGEDGTIQGLLEFMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHE 125 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 E + + VKP GSSVG+S+ V ++ L + A ++E+ Sbjct: 126 EAD--ELVDHFLGDFHGAAFVKPLDSGSSVGISRAVGKDELIRGVAKALSVSHRCMVERA 183 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAG-LEASQEANLQALV 241 + G E T++IL E P I I P FYDY+ KY + T Y PA L+ + + Sbjct: 184 IEGRELTLSILDGEAFPLIEIVPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAVVKIG 243 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 L A+ GC+G R D +LD +G +LLE NT PGMT SL P AA G+ QL RI Sbjct: 244 LAAYHITGCRGLVRADFILDGEGTPWLLELNTIPGMTELSLAPKAAHAVGIEMPQLAERI 303 Query: 302 LELA 305 L+ A Sbjct: 304 LQGA 307 >UniRef50_C4FUR2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUR2_9FIRM Length = 367 Score = 349 bits (896), Expect = 9e-95, Method: Composition-based stats. Identities = 109/347 (31%), Positives = 162/347 (46%), Gaps = 44/347 (12%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP----------------------- 39 KI +L GG SAE ++SL S ++ + + P Sbjct: 6 MKIVLLYGGQSAEHDISLISAHNIMQSIMYNYYEVQPVYITKQGDWLKGAPLSGPLSHSN 65 Query: 40 -------------VDPKEVDVTQLKSMG----FQ-KVFIALHGRGGEDGTLQGMLELMGL 81 P+ V L G VF LHG GEDGT+QG LE++G+ Sbjct: 66 QLALTAGPQARWAEGPEGQSVGTLIQPGDIKEADTIVFPVLHGPNGEDGTIQGFLEVLGM 125 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY G+GV ASA MDK+ SK L+ AGLP P+VA E+ + + L P+ Sbjct: 126 PYVGAGVTASACGMDKVISKQLFHQAGLPQVPYVAFDSREWAQSPEEWMNRCEGNLLYPL 185 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---IL 198 VKP+ GSSVG+SK L+ A+ A Q D +++E+ +S E VA+LG + Sbjct: 186 FVKPANMGSSVGISKATTTEELRAAVEKALQFDRRIVVEQGISAQECEVAVLGNDDAHAS 245 Query: 199 PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 R+ + FYDY+ KY+++ + PA L + +Q L+A+ L KG R+D Sbjct: 246 VVGRLVKTADFYDYDEKYVNNTVEMEIPAQLPDAISDKIQEYALRAYRALDGKGLSRVDF 305 Query: 259 MLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + + Y+ E NT PG T +S+ P G++ L+ +L+LA Sbjct: 306 FVTASHDIYINEINTMPGFTPYSMYPCLWEATGLNTRDLIEELLQLA 352 >UniRef50_D0LDC1 D-alanine/D-alanine ligase n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LDC1_GORB4 Length = 358 Score = 348 bits (895), Expect = 9e-95, Method: Composition-based stats. Identities = 111/341 (32%), Positives = 167/341 (48%), Gaps = 40/341 (11%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV----------------- 45 ++ VL GG SAE +VS + A VLA G + P+ + Sbjct: 6 LRLVVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIAALTDGT 65 Query: 46 --------------DVTQLKSMGFQ---KVFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 +T+L + V LHG GEDGT+QGMLEL LPY G+GV Sbjct: 66 PLPDALDVAGTVVDPLTELAAHAADTPTVVLPLLHGPHGEDGTIQGMLELFKLPYVGAGV 125 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSRE 148 ++SAL MDK +K++ AG+P W+ + + + LGLP+ VKP+ Sbjct: 126 LSSALCMDKAMAKVVAAQAGIPQCRWLEFR--DGVDDPNTIVADAVGQLGLPIFVKPANL 183 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQP 205 GSSVG++K E L A+ +A ++D V++E+ ++G E VA+LG+ E I+P Sbjct: 184 GSSVGITKAHDEAELDTAINVALRYDNVVILEEAVTGREVEVAVLGDTAPETSVPGEIEP 243 Query: 206 SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ 265 FYDYE KY++ + PA L A ++ L K +T + C G R+D + G+ Sbjct: 244 GSEFYDYEDKYITGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVDFFYEESGR 303 Query: 266 FYLL-EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +LL E NT PG T S+ P G+S+ L+ +++ A Sbjct: 304 GWLLNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLVTFA 344 >UniRef50_Q87AG1 D-alanine--D-alanine ligase n=6 Tax=Proteobacteria RepID=DDL_XYLFT Length = 304 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 156/306 (50%), Positives = 207/306 (67%), Gaps = 8/306 (2%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M ++AVLLGGTSAEREVSL SG VL LR G+DA VD L F +VF Sbjct: 1 MFGRVAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFN 60 Query: 61 ALHG--RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 LHG GGEDG +QG+++ G+PYTGS V+ SALSMDK+R+K +W GLP + +L+ Sbjct: 61 VLHGHNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLS 120 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 + + + LG PVI+KP++EGSSVG+S+V A L++A+ LA +++ E+L Sbjct: 121 ----VCATAVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAARYEGELL 176 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 +E+ + G E TV+IL E LPSIRI P G +YDY AKYL+++TQY CP GL+ EA + Sbjct: 177 MEQLIEGDELTVSILDEMALPSIRIVPQGQWYDYNAKYLAEDTQYVCP-GLDDVAEAEIA 235 Query: 239 ALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 L L A+ ++GC+GWGR+DVM + G+F+LLE NT+PGMT+HSLVP AA Q GM F L Sbjct: 236 QLALAAFHSVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDL 295 Query: 298 VVRILE 303 V RILE Sbjct: 296 VWRILE 301 >UniRef50_C4ZI29 D-alanine--D-alanine ligase n=5 Tax=root RepID=C4ZI29_EUBR3 Length = 369 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 107/352 (30%), Positives = 169/352 (48%), Gaps = 54/352 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP------------------- 42 I VL GG S ER+VS +G+ V L+E G +D Sbjct: 18 KMNIVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRAD 77 Query: 43 -----------KEVDVTQLKSMG------------------FQKVFIALHGRGGEDGTLQ 73 + D+ ++K+ VF+ALHG GE+G +Q Sbjct: 78 EISVQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQ 137 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 +L G+ YTGS ++SA++M+K SK + G+P +++TRA + ++ Sbjct: 138 AAFDLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKL---- 193 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL 193 L LP +VKP GSS+G++ V + AL AF+ + E++IE+++ G EF+V ++ Sbjct: 194 --DLTLPCVVKPCCGGSSIGVTIVRDAAEFKAALDDAFKWENELVIEEFVQGREFSVGVI 251 Query: 194 GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 + LP I I P FYDY+ KY + T CPA L ++Q + +G + Sbjct: 252 EGKALPIIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTY 311 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R D +L+ + + LEANT PGMT SL+P A GMSF+QL +++++ Sbjct: 312 SRSDFLLNDKNEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLIDIS 363 >UniRef50_C8C0W8 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W8_9ZZZZ Length = 301 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 113/308 (36%), Positives = 161/308 (52%), Gaps = 13/308 (4%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE--VDVTQLKSMGFQKV 58 M K+ VL+GG SAEREVSL +G V A L++ G + D + V LK V Sbjct: 1 MAKKVLVLMGGFSAEREVSLTTGKCVCAALKKAGYEVVSHDLQNGFELVETLKKEKPDVV 60 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F ALHG GEDG +QG L+++ +PYT SG+ AS L MDK +K L G+ V Sbjct: 61 FNALHGNWGEDGEIQGFLDVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQG---- 116 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 EK K AE + L +P +VKP +GSSVG+ + + +A+R ++ D E+L Sbjct: 117 ----EKMTFRKFKAEGTFLKMPYVVKPVSDGSSVGVYIIRKKED-AEAVR--YEDDREIL 169 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 IE+++ G E T +LG + ++ S FYDY AKY + TQ+ PA + + Sbjct: 170 IEEFIDGKELTCMVLGSQAHVVTELRASDEFYDYHAKYTAGATQHILPAEIPEEAANRCK 229 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 LGC+ R D + + LLE NT+PGMT SLVP A+ G+ + +L Sbjct: 230 LYAEHMHNILGCRSVSRCDFRYNPEDGVVLLEINTAPGMTDLSLVPEQAKYIGIGYERLC 289 Query: 299 VRILELAD 306 ++E A Sbjct: 290 SYLVENAS 297 >UniRef50_C8C0Y9 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0Y9_9ZZZZ Length = 356 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 110/350 (31%), Positives = 170/350 (48%), Gaps = 47/350 (13%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT-------------- 48 K+AVL GG S+E ++S S A++L L + + YPV Sbjct: 1 MKLAVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYCPDCDPDRVESG 60 Query: 49 ----------------------------QLKSMGFQKVFIALHGRGGEDGTLQGMLELMG 80 +++ + VF LHG GGEDGT+QG+LEL G Sbjct: 61 AWERMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLELAG 120 Query: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG-L 139 +PY G GV ASA +MDK +K + +G G+ A + R +FE+ A LG Sbjct: 121 IPYVGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETLGAF 180 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---E 196 PV VKP +GSSVG++K L + L A + D +VL+E+++ G E A+LG + Sbjct: 181 PVFVKPCSQGSSVGVAKANNLLELAEGLTEALKLDTKVLVEEFIDGHEVECAVLGNLEPQ 240 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 I P+ FY ++AKY + ++ + PA + Q A ++ ++ +T LGC+G R+ Sbjct: 241 ASTVGEIAPTQEFYTFDAKYKDESSRLYIPAHITEEQLATVRQDAVRVYTALGCRGLSRV 300 Query: 257 DVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D + D G+ E N PG TS S+ P G+ +++L+ R++ LA Sbjct: 301 DFFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELLDRLISLA 350 >UniRef50_UPI0001BCDC65 D-alanine--D-alanine ligase n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCDC65 Length = 356 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 108/340 (31%), Positives = 166/340 (48%), Gaps = 38/340 (11%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP----------------VDPKEV 45 ++AV+ GG S+E VS + VLA L D P D Sbjct: 11 RPRLAVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPG 70 Query: 46 DVTQLKSMG----------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSM 95 + +++ G F VF LHG GEDGT+QG+LE+ + Y G+GV+ASA+SM Sbjct: 71 TLPAVRADGPVFAWERLAEFDAVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSM 130 Query: 96 DKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 155 DK +K ++ AGLP P+V + E+ + S + + LGLPV VKP+R GSS G++ Sbjct: 131 DKPFTKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRA-LGLPVFVKPARAGSSSGVA 189 Query: 156 KVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILGEEILPSI-----RI----QP 205 V + + L A+ A D +V++E + G E +L + I + Sbjct: 190 MVESWDDLDAAVVAARAFDPKVIVEAFARGKRELECGVLQGPDGRPVASVVGEITVAAES 249 Query: 206 SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ 265 FYD+EAKYL + PA + + ++ ++A+ +GC+G R+D L DG Sbjct: 250 DHDFYDFEAKYLDGTSVNLVPADIPVTLSERIRTYAVQAFEAVGCEGLARVDFFLTDDG- 308 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + E NT PG T S+ P+ +G+ + LV R++ LA Sbjct: 309 LVVNEINTMPGFTPFSMFPLLWEASGVRYEDLVDRLVRLA 348 >UniRef50_Q6ASD8 D-alanine--D-alanine ligase n=3 Tax=Desulfobacterales RepID=DDL_DESPS Length = 322 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 165/311 (53%), Gaps = 14/311 (4%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG--FQKVF 59 +IA++ GGTS EREVSL V L + D D+ +L + F Sbjct: 8 RLRIALIAGGTSGEREVSLTGADGVERILDKEKYLVSRYD-SATDLPRLAADAASIDFAF 66 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 I LHG GEDGT+QG L+L+G+PY GSGV+ SAL+MDK +K + A LPVA W + Sbjct: 67 ILLHGLHGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAA 126 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHD-EEVL 178 +F I LGLP++VKP+ GSS+G+S E L + A ++ Sbjct: 127 GDFFYSEE-----LIEDLGLPLVVKPACAGSSIGISLAHTEEELLAGINHARDCSAGAIM 181 Query: 179 IEKWLSGPEFTVAILGEE---ILPSIRIQPSG--TFYDYEAKYLSDETQYFCPAGLEASQ 233 +E+++ G E T A+LG + LP + I P F+DYEAKY ++ CPA + + Sbjct: 182 VEQFIKGRELTCAVLGNDDLQALPVLEIVPGDKYAFFDYEAKYQPGASEEICPALIADAL 241 Query: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 +Q ++A L +G+ R D + DG+ YLLE NT PGMT S++P A GM Sbjct: 242 REQVQDHAIRAHQALRLRGYSRTDFIYGEDGKLYLLETNTIPGMTETSILPQEAAATGMD 301 Query: 294 FSQLVVRILEL 304 F L+ ++EL Sbjct: 302 FPSLLDTLIEL 312 >UniRef50_C4Z4D3 D-alanine-D-alanine ligase n=4 Tax=root RepID=C4Z4D3_EUBE2 Length = 382 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 111/349 (31%), Positives = 169/349 (48%), Gaps = 57/349 (16%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP--------------KEVDVT 48 +I VL GGTS ER+VSL +G V LR G +A +D ++ D+ Sbjct: 40 MRIVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDLG 99 Query: 49 QLKSM--------------------------------GFQKVFIALHGRGGEDGTLQGML 76 +L VF+ LHG GEDG +Q Sbjct: 100 ELSDNLKKKTADIPAEVKRRTEARESFFGRNVLELCKEADMVFMGLHGSNGEDGKVQATF 159 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 +L+G+ YTG+ ++SA+SM K +K + G+P+ V L + +I Sbjct: 160 DLLGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGVTLHKG-----------HKIEY 208 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE 196 + P +VKP GSSVG+S E +DAL AF +++ VL+E+++ G EF+VA+L + Sbjct: 209 VPFPCVVKPCCGGSSVGVSIAHNEKEFEDALDEAFSYEDTVLVEEFVDGREFSVAVLDGK 268 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 LP I I+P FYDY+ KY + T+ CPA + + +Q K G + R+ Sbjct: 269 ALPVIEIEPLEGFYDYKNKYKAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTYARV 328 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D +LD + + LE NT PGMT SL+P A G+S+ +L +I+E++ Sbjct: 329 DELLDKNNNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIEIS 377 >UniRef50_C7G8P6 D-alanine--D-alanine ligase n=4 Tax=Firmicutes RepID=C7G8P6_9FIRM Length = 351 Score = 345 bits (887), Expect = 8e-94, Method: Composition-based stats. Identities = 107/351 (30%), Positives = 168/351 (47%), Gaps = 54/351 (15%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-------------------- 42 KI VL GG S ER+VS +G V LRE G +D Sbjct: 1 MKIVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEE 60 Query: 43 ----------KEVDVTQLKSMGFQ------------------KVFIALHGRGGEDGTLQG 74 D+ ++K+ VF+ALHG GE+G +Q Sbjct: 61 VSVKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQA 120 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 +L G+ YTG+G ++SAL+MDK SK L+ AG+P ++ +A+ ++ Sbjct: 121 AFDLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKL----- 175 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG 194 + P +VKP GSS+G+S + AL AF+ +E +++E+++ G EF+V ++ Sbjct: 176 -GVQFPCVVKPCCGGSSIGVSIAHNAEEYKAALDEAFRWEENLIVEEYVKGREFSVGVIE 234 Query: 195 EEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 + LP I I P FYDY+ KY + CPA L + +Q + LG + Sbjct: 235 GKALPIIEIAPVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYS 294 Query: 255 RIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R D +LD + Y LEANT PGMT SL+P A+ G++F++L ++++++ Sbjct: 295 RTDFLLDENENIYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQIS 345 >UniRef50_UPI0001C35C8F D-alanine--D-alanine ligase n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35C8F Length = 358 Score = 345 bits (887), Expect = 8e-94, Method: Composition-based stats. Identities = 120/345 (34%), Positives = 168/345 (48%), Gaps = 55/345 (15%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-------------------- 42 KI VL GG S EREVSL+SG+ + L E G + + +DP Sbjct: 18 MKIIVLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWPGIREGEEVRYRTREEGYH 77 Query: 43 -------KEVDVTQLKS-----------------MGFQKVFIALHGRGGEDGTLQGMLEL 78 + D+ +L++ VFIALHG GEDG +Q +LE Sbjct: 78 FSSEIGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLEA 137 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 G+P+TGS L+MDK SK+ + AG+ W + + + Sbjct: 138 YGIPHTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDF----------- 186 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 LP +VKP GSSVG++ V E AL AF H VL+EK ++G EF+V +LG+ L Sbjct: 187 LPCVVKPLDCGSSVGVTIVEREEEWSAALEAAFSHGGRVLVEKKITGREFSVGVLGDRAL 246 Query: 199 PSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 P+I I P FYDY+ KY T+ CPA ++ QE ++ L L + R+D Sbjct: 247 PAIEIIPESGFYDYQNKYQPGMTREICPAWIDGMQEVKMKETALTVHRILELGYYSRVDF 306 Query: 259 MLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 M+D DG Y LEANT PGMT SL+P A+ AG+++ +L I+ Sbjct: 307 MMDEDGAIYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIVN 351 >UniRef50_C9M663 D-alanine--D-alanine ligase B n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M663_9BACT Length = 321 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 127/310 (40%), Positives = 164/310 (52%), Gaps = 10/310 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD--PKEVDVTQLKSMGFQKVFI 60 KI VL GG S EREVSL SG AV L+ G + +D E LK+ F Sbjct: 5 QKIVVLYGGNSPEREVSLVSGQAVEKALKSAGYETELIDLTGPEKVFEALKT-PCDLFFP 63 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GEDG LQ L+L G PY GSG +AS L MDK SK L+ AGL V + + Sbjct: 64 VLHGSWGEDGRLQAALDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHTPKGVLVRQK 123 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH-DEEVLI 179 + L L + G +IVKP+ GS+V S V L AL A++ L+ Sbjct: 124 DGTGDLP-GLLRALERYG-KLIVKPNCGGSTVATSVVSCSEELLPALNAAWEQKSGGALV 181 Query: 180 EKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+++ G E TVA+ G E LP++ I P+ FYDY+AKY ++Y PA L + Sbjct: 182 EEFIPGRELTVAMWDSGSGPEALPAVEILPASGFYDYQAKYTDGASRYESPARLSGEEAR 241 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 L + AW +G + +GR D L DG+ LLE NT+PGMTSHSLVPMAA+ AGM Sbjct: 242 ALSEAAVAAWRAVGLRDYGRADFRLPPDGEPVLLEINTAPGMTSHSLVPMAAKSAGMELP 301 Query: 296 QLVVRILELA 305 + R+ A Sbjct: 302 DFLSRLARRA 311 >UniRef50_B1CAT5 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CAT5_9FIRM Length = 358 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 105/340 (30%), Positives = 165/340 (48%), Gaps = 37/340 (10%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK--------EVDVTQLKSM 53 + V+ GG S E +VSL S V+ G+ + D + + DV ++K+ Sbjct: 4 KKNVGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKTN 63 Query: 54 ----------------------GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMAS 91 +F LHG+ GEDG +QG+ E+M PY G V+AS Sbjct: 64 EWINDSKNLISDFSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEVLAS 123 Query: 92 ALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKG--LSDKQLAEISALGLPVIVKPSREG 149 ++ MDK +K +++ G+PV V + + E L L P+ VKP G Sbjct: 124 SVCMDKDIAKRIFRSVGIPVVDDVLVFNTDIETDKLLEATLDRCEENLPYPMFVKPVNMG 183 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPS 206 SSVG+SK ++L++AL A + D ++L+EK ++ E VA+LG E I Sbjct: 184 SSVGISKAKDRDSLKEALLKAVKFDTKILVEKGINAREIEVAVLGNSHPEASYPGEIVSC 243 Query: 207 GTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ 265 FYDYEAKYLS + ++ PA ++ ++ +KA+ +G G R+D LD D + Sbjct: 244 KEFYDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAVKAFKAVGGSGLSRVDFFLDKDSK 303 Query: 266 -FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 YL EANT PG T+ S+ G+ +S L+ ++++L Sbjct: 304 DIYLNEANTLPGFTNISMYAKMWDYMGIGYSDLIEKLIDL 343 >UniRef50_Q9HWI0 D-alanine--D-alanine ligase A n=10 Tax=Bacteria RepID=DDLA_PSEAE Length = 346 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 123/338 (36%), Positives = 176/338 (52%), Gaps = 44/338 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK------------------ 43 K+AVL GG+S ER+VS+ SGA V+ LR G VD Sbjct: 5 KLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVK 64 Query: 44 ----------------EVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 + ++ + G F+ALHG GEDGTLQ +L+ G YTGSG Sbjct: 65 EVPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSG 124 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 +ASA++MDK +K L+ AG+ A W+ +E E LG P++VKP+ Sbjct: 125 HLASAMAMDKDVAKRLFLAAGVETASWLMAPASEEE---------VREQLGFPLVVKPNS 175 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSG 207 +GS+VG+S V ++ LQ A+ LA ++ +EV++E++++G E TV +L ++ LP I G Sbjct: 176 QGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGG 235 Query: 208 -TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 +DYE KY + + PA L + A Q L LK L G+ R D LD G+ Sbjct: 236 QEVFDYEHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGRL 295 Query: 267 YLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + LE NT PGMT+ SL+P AA AG+ F++L RI L Sbjct: 296 WCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRL 333 >UniRef50_A5EY21 D-alanine--D-alanine ligase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=DDL_DICNV Length = 310 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 133/302 (44%), Positives = 191/302 (63%), Gaps = 9/302 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIAL 62 K+AVL GG S+ERE+SL G AV A L GIDA+ +D + + + LK F + F+ L Sbjct: 9 KVAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFSRAFVML 68 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGRGGEDG +Q +L+ +G+PYTGS V+A AL+MDK+ K +WQ AGLPV V +T Sbjct: 69 HGRGGEDGEIQAILQWLGIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPESR 128 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + L ++ + ++KP+ EGSSVG+S+V + L A+ A +++ E W Sbjct: 129 FETLVEQLHCQD------FVIKPALEGSSVGVSRVKNQEQLAAAIPFAGGARAKIMAEPW 182 Query: 183 LSGPEFTVAILGEEILPSIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 + G E T I+ + +LP+I I FYDY+AKY + TQY CPA ++A+ +A + + Sbjct: 183 IVGRELTYGIVNDTVLPAIEIVAGNDHDFYDYDAKYHAANTQYLCPAPIDAALDARCREI 242 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 A+ +G +GWGR+D+++D+ + YLLE N PGMT+HSLVPMAA+Q GM FS LV Sbjct: 243 AFAAFQAIGARGWGRVDMIVDAQNRPYLLEINLVPGMTTHSLVPMAAQQIGMDFSALVQS 302 Query: 301 IL 302 IL Sbjct: 303 IL 304 >UniRef50_C8W8J3 D-alanine/D-alanine ligase n=3 Tax=Atopobium RepID=C8W8J3_ATOPD Length = 319 Score = 345 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 174/309 (56%), Gaps = 7/309 (2%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-DAYPVDPKEVD-VTQLKSMGFQKVF 59 +AV+ GG S E E+++ SG A L+E G + +D E D V L + V+ Sbjct: 8 KLHVAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAEKDFVVALAQGDYDVVY 67 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 +A+HGR GEDG +QG+LE++ +PYT SGV+ASA+ +K SKL+++ AG+P + + Sbjct: 68 VAMHGRFGEDGCIQGLLEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPS 127 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 ++ I LG P+ VKPS GSS G+++V + L AL+LA + E +LI Sbjct: 128 GTVFTD--EQVDKLIEDLGFPMFVKPSGNGSSYGVTRVTSREELPAALKLAGEQGERILI 185 Query: 180 EKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 E+ + G E TV ++G + LP + I FY + KY + PA LE + A Sbjct: 186 EECVVGTEITVPVIGNDNPTALPIVEIVTGDEFYSIKTKYEPASLHHVIPARLEPAVYAR 245 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 Q L +KA LGC+G R D ++ DG+ +LE NT PGMT+ SL+P +AR G+ F + Sbjct: 246 AQELAIKAHNALGCRGVSRSDFIVTEDGEPVVLETNTIPGMTARSLLPDSARTGGIDFPE 305 Query: 297 LVVRILELA 305 L R +E A Sbjct: 306 LCTRFIEFA 314 >UniRef50_B0PG04 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG04_9FIRM Length = 357 Score = 343 bits (881), Expect = 4e-93, Method: Composition-based stats. Identities = 107/349 (30%), Positives = 157/349 (44%), Gaps = 46/349 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------DVTQLKSM 53 +AVL G S+E EVSL S A+VL + D + + + ++S Sbjct: 3 KKTVAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIESD 62 Query: 54 GF---------------------------------QKVFIALHGRGGEDGTLQGMLELMG 80 + VF LHG EDG +QG+LE+ G Sbjct: 63 RWLQNGPVTPAFISPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGLLEMAG 122 Query: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 L Y G GV+ASA MDK + + + AG+ + P+ LTR + + + G P Sbjct: 123 LAYVGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALA-HFDETERMLAAKHGYP 181 Query: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE----E 196 + +KP+ GSSVG+ K L AL AF+ D +V+ E + G E A+LG E Sbjct: 182 MFIKPANTGSSVGVGKAKDAGGLCAALSEAFRFDRKVIAETAVVGDELECAVLGNFDRAE 241 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 I P FYDY KYL D T + PA + ++ ++A+ +GC G R+ Sbjct: 242 ASCVGEIVPRHEFYDYSGKYLDDSTDLYIPARISGEASERIRQTAVRAFAAMGCTGLSRV 301 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D L +G+ L E NT PG TS S+ P G+ + +L+ R++ELA Sbjct: 302 DFFLTREGRVVLNEINTLPGFTSISMYPKLFEAVGLPYPELISRLIELA 350 >UniRef50_A1AX29 D-alanine--D-alanine ligase n=3 Tax=Gammaproteobacteria RepID=DDL_RUTMC Length = 293 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 140/299 (46%), Positives = 192/299 (64%), Gaps = 9/299 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 IAVL+GG SAER VSL SG AV L I+ + D ++++L F + FI LHG Sbjct: 2 IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFDWHGYNLSELWQQEFDQAFIVLHG 61 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 RGGEDG +Q LE + YTGS AS +DK R+K++W+ L +AP + + Sbjct: 62 RGGEDGYIQKQLENRCIRYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIVASIH---- 117 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 + E LP +VKP+ EGSS+G+SKV ++ L +AL LA+Q++ LIE+W+ Sbjct: 118 -----KPIEPIDFPLPWMVKPTLEGSSIGISKVDSQIQLNNALMLAWQYNSHALIEQWIE 172 Query: 185 GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 G E+TVAILG++ LP ++I FYDYE+KY S++ QY CP GL +SQE LQ + LKA Sbjct: 173 GDEYTVAILGDKALPVVKIITDQGFYDYESKYHSNKIQYLCPCGLSSSQEQVLQVIALKA 232 Query: 245 WTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 + + KGWGR+D +++ + YLLE NT PGMTSHSLVPMAA+ GMSF++LVV I+ Sbjct: 233 FFAINAKGWGRVDFIINQHNKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIIN 291 >UniRef50_A6CDT2 D-alanine--D-alanine ligase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CDT2_9PLAN Length = 320 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 109/297 (36%), Positives = 160/297 (53%), Gaps = 4/297 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 I VL GG SAE E+SL SG V L G VDP VD+ + G VF+ALH Sbjct: 13 NIVVLSGGESAESEISLKSGETVARALSSRGHQVKIVDPSLVDLDRFDWTGCDVVFLALH 72 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDGT+Q L+ +G+PY+G S L+ K SK + + +V + ++ Sbjct: 73 GTYGEDGTIQSTLDRLGIPYSGCDAATSKLAFSKSASKERFIQHNVNTPSYVLIHESDDA 132 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 + ++G P++VKP +GSS+G++ V + L AL F +D ++E + Sbjct: 133 GRIEQHAR----SMGYPLVVKPDAQGSSLGVTIVKSPEELPQALARCFHYDSFGILESAI 188 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G E+TV ++ +++LP I+IQ F+DYEAKY D TQY L + + + Sbjct: 189 KGTEWTVTVVDDQVLPLIQIQTPHEFFDYEAKYTEDSTQYLFEFDLPTNVIQAIIKTGVN 248 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 A T LG G R+D+++D Q ++LE NT PG T HSLVP AA +AG+ F +L + Sbjct: 249 ACTALGTTGIVRVDLLVDRFQQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGELCEQ 305 >UniRef50_Q316H9 D-alanine--D-alanine ligase n=13 Tax=Desulfovibrionales RepID=DDL_DESDG Length = 308 Score = 342 bits (879), Expect = 8e-93, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 150/304 (49%), Gaps = 10/304 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGF-QKVFIA 61 +I ++ GG S ER+VSL+ + A L G DP L++ F+ Sbjct: 1 MRILLIAGGWSEERDVSLSGARGIHAALERLGHQVTLFDPCRTLAGLLEAAQAHDFAFLN 60 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG+ GEDG +Q +LE G+PY GSG S L+++K +K ++ GLP WV L Sbjct: 61 LHGQPGEDGLVQALLETAGVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHP 120 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 P +K + GSS+ + +V L AL F E +IE Sbjct: 121 GADWEPP--------FAFPAFIKSNNGGSSLALHRVSCPGELARALDELFTRGGEAIIEP 172 Query: 182 WLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 + G E T +LG+E LP I I+P F+DY +KY + + CPA L A ++ Sbjct: 173 AVEGVEVTCGVLGDEALPPILIRPLGAGFFDYASKYTPGQAEELCPAPLPGEVTAKVREY 232 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L+A LG +G+ R D +L G LLE NT PGMT+ SL+P A G+SF L+ R Sbjct: 233 ALRAHRALGLRGYSRSDFILTPAGALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGR 292 Query: 301 ILEL 304 ++EL Sbjct: 293 LIEL 296 >UniRef50_A0AGY4 D-alanine--D-alanine ligase n=117 Tax=Bacilli RepID=DDL_LISW6 Length = 370 Score = 342 bits (879), Expect = 9e-93, Method: Composition-based stats. Identities = 109/354 (30%), Positives = 170/354 (48%), Gaps = 49/354 (13%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE--------------VD 46 M K+ +L GG SAE EVSL + +V+ L +A P+ Sbjct: 1 MKTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLTGKLDF 60 Query: 47 VTQLK-------------------------SMGFQ----KVFIALHGRGGEDGTLQGMLE 77 V QL+ + VF LHG GEDGT+QG+ E Sbjct: 61 VEQLRFSATNTVKLAATESEKSEGEAISPAVLEADDQETVVFPLLHGPNGEDGTVQGLFE 120 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 ++ +PY G+GV+AS+ +MDK+ K ++ AG+P P VA+ +++ + L Sbjct: 121 VLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVSEMEEVL 180 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE- 196 PV VKP+ GSSVG+SK + L+DA+ AF +D V++E+ + E + +LG + Sbjct: 181 TYPVFVKPANLGSSVGISKATNKKELEDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDT 240 Query: 197 --ILPSIRIQPSG---TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCK 251 I P G TFYDY+AKY + T P ++ ++ ++A+ L Sbjct: 241 PVCSVPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDAS 300 Query: 252 GWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G R D L D Q +L E NT PG T +S+ P+ ++ G+ +S L+ R+++LA Sbjct: 301 GLVRADFFLTDDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYSALIERLVDLA 354 >UniRef50_C1SFZ2 D-alanine--D-alanine ligase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SFZ2_9BACT Length = 298 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 124/307 (40%), Positives = 168/307 (54%), Gaps = 16/307 (5%) Query: 1 MT-DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVF 59 M K+AVL GG SAEREVSL SG A L G +D ++ G F Sbjct: 1 MKDKKVAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEAGADVCF 60 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG GEDG +QGML+++G+PYTGS A+ ++ DKL SK + G+ ++ L Sbjct: 61 IALHGTYGEDGRVQGMLDIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELNA 120 Query: 120 AEFEKGLSDKQLAEISALGLPVIV-KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVL 178 + V KP+R+GSSVG+ V E L AF++D +V+ Sbjct: 121 P-------------KKGMPFECCVIKPARQGSSVGIHIVQNEEEYFSKLEDAFKYDSKVI 167 Query: 179 IEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 +E+ + G E TV+IL E LP I I+P YDYE+KY T+Y GL AS+ ++ Sbjct: 168 VEECIKGVELTVSILDGETLPVICIRPKKGVYDYESKYTKGMTEYVFDTGLSASETECVE 227 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 +KA+ LGC G+GR D+M D Y+LE NT PGMT SL+P AA +AGMSF +V Sbjct: 228 NAAMKAFDVLGCSGYGRADIMYDGR-TPYVLEVNTLPGMTETSLLPKAANKAGMSFDNMV 286 Query: 299 VRILELA 305 ++L A Sbjct: 287 EKMLLGA 293 >UniRef50_B3QU24 D-alanine--D-alanine ligase n=2 Tax=Bacteria RepID=DDL_CHLT3 Length = 366 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 108/352 (30%), Positives = 171/352 (48%), Gaps = 48/352 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT------------- 48 K+A+L GG S+E E+S+ S ++ L + P+ + Sbjct: 3 KKKVALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILAMD 62 Query: 49 -------------------------------QLKSMGFQKVFIALHGRGGEDGTLQGMLE 77 ++ F LHG GEDGT+QG+LE Sbjct: 63 FESAIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGLLE 122 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 + + Y GSGV+ASA++MDK +K+ ++ AGL V ++A R EFE+ L Sbjct: 123 MFDVAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEKKL 182 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE- 196 P+ VKP+ GSSVG+SK N L +A+ LA +D + LIEK ++ E VA+LG + Sbjct: 183 RYPMFVKPANMGSSVGISKAHNRNELIEAIELALAYDRKFLIEKAINAREMEVAVLGNDE 242 Query: 197 --ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 + P FYDY+AKY+ ++ PA + + L+A L A+ C+G Sbjct: 243 PIASAVGEVVPCNEFYDYDAKYVKGSSEVIIPAQISEAFAGKLKAAALNAFVAADCEGMA 302 Query: 255 RIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D +++ + + Y+ E N+ PG TS S+ P Q G+S+++L+ R++ELA Sbjct: 303 RVDFLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIELA 354 >UniRef50_C8C0W7 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W7_9ZZZZ Length = 348 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 122/344 (35%), Positives = 170/344 (49%), Gaps = 47/344 (13%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD----------PKEVDVTQL-- 50 KIAVL GG S+ER+VSL++G V LRE G D VD P+EV L Sbjct: 1 MKIAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLVDACVDFPLDCRPEEVFEKALPI 60 Query: 51 -----------------KSMGF------------QKVFIALHGRGGEDGTLQGMLELMGL 81 ++ GF VF ALHG GE+G LQ + +L+ + Sbjct: 61 ENHAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLLNI 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 YTGSG L+M+K SK L++ G+P V L+ ++ + LGLP Sbjct: 121 CYTGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESD-----KCRAAELCEKLGLPC 175 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI 201 +VKP+ GSSVG+S V + AL AF + V++EK++ G EF V I+G +LP+I Sbjct: 176 VVKPASLGSSVGVSIVRTIDEFFTALDSAFSLEHTVIVEKYIKGREFAVGIVGSRVLPAI 235 Query: 202 RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD 261 I P FYDY+ KY T CPA +++ + K + LG + R D M+D Sbjct: 236 EIIPKHGFYDYKNKYQPGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADFMVD 295 Query: 262 SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +G Y LEANT PGMT SL+P A + F L+ I++ + Sbjct: 296 ENG-IYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIKES 338 >UniRef50_D1BDJ8 D-alanine--D-alanine ligase n=33 Tax=root RepID=D1BDJ8_SANKS Length = 400 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 112/360 (31%), Positives = 170/360 (47%), Gaps = 57/360 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQ----- 56 ++ +L GG S E +S + A V+ + D PV L Sbjct: 34 RPRVVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQWVLVEDDPDRWAIT 93 Query: 57 -----------------------------------------KVFIALHGRGGEDGTLQGM 75 VF LHG GEDGTLQGM Sbjct: 94 DGRLPEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGPFGEDGTLQGM 153 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 LEL + Y G+GV+ASA+ MDK KL+ G GLPV P+ + E+++ ++ A ++ Sbjct: 154 LELADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRD-AEAVTARVA 212 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE 195 LGLPV VKP+R GSS+G+SKV L A+ A +HD +V++E + G E A+LG Sbjct: 213 GLGLPVFVKPARAGSSLGISKVDDLADLPAAVAEARRHDPKVIVEAGIVGREIECAVLGG 272 Query: 196 E------ILPSIRIQ---PSGTFYDYEAKYLSDET-QYFCPAGLEASQEANLQALVLKAW 245 IQ + FYD+EAKYLS+++ + CPA L A +Q + ++ + Sbjct: 273 RRGERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCPADLSPELVAEVQDVAVRTF 332 Query: 246 TTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + +G R+DV + G+ + E NT PG T S+ P ++G+ +++L+ ++ELA Sbjct: 333 EAVSGEGLSRVDVFVTEAGEVVVNEINTMPGFTPFSMYPRMWDRSGLPYAELITELVELA 392 >UniRef50_C6D443 D-alanine/D-alanine ligase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D443_PAESJ Length = 359 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 106/345 (30%), Positives = 167/345 (48%), Gaps = 40/345 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP---------------KEV 45 M K+ VL GG S E EVSL + VL + E +AYPV E+ Sbjct: 1 MRTKLYVLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPIAKDEL 60 Query: 46 DVTQLKSM---------------------GFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 + +L + G + V LHG GEDGT+QG+LEL+ +PY Sbjct: 61 TIERLIATPTFPDPARSIGEILSGIMALPGPKVVLPLLHGPNGEDGTVQGLLELVNVPYV 120 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 G+GV+++AL++DK SK + AG+ + E+ ++ P VK Sbjct: 121 GNGVLSAALTLDKAMSKQVLAQAGINQTEYRVYRYEEWITDEESVLRKAEDSIEYPCYVK 180 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSI 201 P+ GSS+G+S+ L +R AF +D++++IE+ +SG E VA++G E Sbjct: 181 PASLGSSIGISRCTNRGELLAGIREAFSYDKKLVIEREVSGREIQVAVIGNERPLASLPG 240 Query: 202 RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD 261 F+DYE+KY+ PA L ++ L ++A+ GC+G R+D LD Sbjct: 241 EFIHDHIFFDYESKYMDKRLTMQIPANLADGLTPRIRELAVRAYQAHGCEGLARVDFFLD 300 Query: 262 SDGQFYLLEANTSPGMTSHSLVPMAARQA-GMSFSQLVVRILELA 305 +GQ YL E N PG T+ S+ P+ + G ++S+L+ +++ A Sbjct: 301 GEGQLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHA 345 >UniRef50_D2N2G7 Putative D-ala D-ala ligase n=1 Tax=Akkermansia muciniphila RepID=D2N2G7_9BACT Length = 316 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 123/309 (39%), Positives = 165/309 (53%), Gaps = 17/309 (5%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-DAYPVDPKEVDVTQLKSMGFQKVFIA 61 KIA+LLGG AEREVSL SG +V L G D VD D G + + Sbjct: 13 LKIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVHGPDFRL--PEGTELAYNI 70 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 +HG GEDGTLQ +LE G+PYTG+G +SAL +K SK ++ AG+P Sbjct: 71 IHGTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTP--------- 121 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + L + +L LP ++KP EGSSVG+ V + + A+ A H VL+E+ Sbjct: 122 HAEILDCSNGIVMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEE 181 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY----LSDETQYFCPAGLEASQEANL 237 ++ G E TV IL + LP I I P FYD KY + T Y CPA L AN+ Sbjct: 182 FIQGKELTVGILDGKALPVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANV 241 Query: 238 QALVLKAWTTLGCKGWGRIDVML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 Q LKA+ G + +GR+DV+L + DG ++LE NT PGMT SL+P AA +G + Sbjct: 242 QEAALKAYKAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYED 301 Query: 297 LVVRILELA 305 L +I EL+ Sbjct: 302 LCEKIAELS 310 >UniRef50_B2UPW3 D-alanine/D-alanine ligase n=3 Tax=Verrucomicrobiaceae RepID=B2UPW3_AKKM8 Length = 311 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 123/309 (39%), Positives = 165/309 (53%), Gaps = 17/309 (5%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-DAYPVDPKEVDVTQLKSMGFQKVFIA 61 KIA+LLGG AEREVSL SG +V L G D VD D G + + Sbjct: 8 LKIALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVHGPDFRL--PEGTELAYNI 65 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 +HG GEDGTLQ +LE G+PYTG+G +SAL +K SK ++ AG+P Sbjct: 66 IHGTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTP--------- 116 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + L + +L LP ++KP EGSSVG+ V + + A+ A H VL+E+ Sbjct: 117 HAEILDCSNGIVMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAVTHGTTVLVEE 176 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY----LSDETQYFCPAGLEASQEANL 237 ++ G E TV IL + LP I I P FYD KY + T Y CPA L AN+ Sbjct: 177 FIQGKELTVGILDGKALPVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANV 236 Query: 238 QALVLKAWTTLGCKGWGRIDVML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 Q LKA+ G + +GR+DV+L + DG ++LE NT PGMT SL+P AA +G + Sbjct: 237 QEAALKAYKAAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYED 296 Query: 297 LVVRILELA 305 L +I EL+ Sbjct: 297 LCEKIAELS 305 >UniRef50_C5RGF5 D-alanine/D-alanine ligase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGF5_CLOCL Length = 341 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 112/341 (32%), Positives = 170/341 (49%), Gaps = 35/341 (10%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQ----------- 49 M IAV+ GG S+E ++SL S A VL + + YP+ + + Sbjct: 1 MNKNIAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKEGLWYEYTGSIDKIED 60 Query: 50 -----------------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 L + VF LHG GEDGT+QG+ +L+ LP G+ V++SA Sbjct: 61 GSWINDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLCKLLRLPCVGASVLSSA 120 Query: 93 LSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSV 152 L MDK SK + + + V P+ + E+ S + I LG V VKPS GSSV Sbjct: 121 LCMDKAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKKLGEEVFVKPSNGGSSV 180 Query: 153 GMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE------EILPSIRIQPS 206 G+SK+ AE++ + A+ AF++D+ VL+EK ++ E VAI+ + +I + + Sbjct: 181 GVSKLKAEDSFEVAIEKAFKYDKRVLVEKAIAAREIKVAIIEDGIELKTKIGEVVYKNSN 240 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQ 265 FYDYE KY + PA LE ++AL LKA+ L C+G R+D +D + Sbjct: 241 KEFYDYEVKYTEGMNELIVPAKLETEVMDKIEALALKAYKVLDCRGMARVDFFIDRYTSE 300 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 YL E NT PG T S P AG++ ++L+ +++ A+ Sbjct: 301 IYLNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNAE 341 >UniRef50_A8M645 D-alanine--D-alanine ligase n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M645_SALAI Length = 360 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 110/357 (30%), Positives = 151/357 (42%), Gaps = 63/357 (17%) Query: 6 AVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL--------------- 50 AV+ GG S E +S S +VLA L + PV L Sbjct: 2 AVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGGDSSQLAITDRRL 61 Query: 51 --------------------------------KSMGFQKVFIALHGRGGEDGTLQGMLEL 78 VF LHG GEDGT+QGMLE+ Sbjct: 62 PEVTAESGTAVVLNADPSSGGLLVLDPAEGSRALADVDVVFPVLHGAYGEDGTIQGMLEM 121 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 G+PY G+ V ASA +MDK +K L G+PV P+ L + LG Sbjct: 122 AGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRSGMTLTEQDKQ------RLG 175 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 LPV VKPSR GSS G+++V L DA+ A + D +VL+E + G E +L E Sbjct: 176 LPVFVKPSRAGSSFGITRVTDWADLDDAVANARKIDPKVLVESAVIGREIECGVLEAEAG 235 Query: 199 PS--------IRIQPSGTFYDYEAKYLSDET--QYFCPAGLEASQEANLQALVLKAWTTL 248 +R+ FYD+EAKY+ + +Y PA L +Q ++A+T L Sbjct: 236 GVPEASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADLPERVTRQVQEYAVRAFTAL 295 Query: 249 GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C G R D + + YL E NT PG T S+ P +G+ + +LV R++ A Sbjct: 296 DCAGLARADFFVTPELDVYLNEVNTMPGFTPTSMFPRMWAASGLEYQKLVNRLIRTA 352 >UniRef50_Q2NCY7 D-alanine--D-alanine ligase n=10 Tax=Sphingomonadales RepID=DDL_ERYLH Length = 323 Score = 339 bits (871), Expect = 6e-92, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 161/311 (51%), Gaps = 16/311 (5%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 + VL+GG + EREVSL SG V L + G +D ++ VF A Sbjct: 6 KLHVVVLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAPDVVFNA 65 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDGT+QGML+LMG+PYT SG+ S +++DK +K G+P+ + + Sbjct: 66 LHGVPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSED 125 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLA----FQHDEEV 177 + L P ++KP EGSSVG++ V E+ + +R +Q E+ Sbjct: 126 LYQQDP---------LARPYVLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFREL 176 Query: 178 LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 L E ++ G E T A++G + L ++P FYD++AKY T++ CPA + EA Sbjct: 177 LAEPFIRGRELTTAVVGGQALAVTELKPKSGFYDFDAKYTDGMTEHVCPADIPPEIEALC 236 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDS---DGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 + L+A LGC+G R D D D ++LE NT PGMT SLVP A AGMS+ Sbjct: 237 KKYALEAHRILGCRGTSRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSY 296 Query: 295 SQLVVRILELA 305 LV I+E A Sbjct: 297 EDLVEAIVEAA 307 >UniRef50_A9KQG5 D-alanine--D-alanine ligase n=3 Tax=Firmicutes RepID=A9KQG5_CLOPH Length = 340 Score = 339 bits (870), Expect = 8e-92, Method: Composition-based stats. Identities = 123/346 (35%), Positives = 167/346 (48%), Gaps = 54/346 (15%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-------------------- 42 K+ VL GG S EREVSL+SG+ + L E G + +D Sbjct: 1 MKVVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQ 60 Query: 43 ---------KEVDVTQLKSMG-----------------FQKVFIALHGRGGEDGTLQGML 76 +E ++T+LK KVF+ALHG GE+G LQ M Sbjct: 61 NPYQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMF 120 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 ++ G+ YTGSG + S L+MDK SK++ Q G+ ++ E + Sbjct: 121 DIYGISYTGSGYIGSLLAMDKGLSKVIMQKHGIETPDYIVADLTEEQ--------ELEKT 172 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE 196 L LP ++KP GSSVG+S V ++ L AL A +++ +VLIE+ + G EF+V IL Sbjct: 173 LMLPCVIKPLSCGSSVGVSIVRSQEELGKALDYAKKYENKVLIEELIVGREFSVGILNHH 232 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 LP I I P FYDY KY + CPA LE +Q LK L + R+ Sbjct: 233 ALPLIEIIPKTGFYDYTNKYQAGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSRV 292 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 D +L DG FY LEANT PGMT SL+P A G+S+S+L IL Sbjct: 293 DFLLKEDGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKLCELIL 338 >UniRef50_D1S655 D-alanine/D-alanine ligase n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S655_9ACTO Length = 377 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 103/359 (28%), Positives = 159/359 (44%), Gaps = 57/359 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE----------------- 44 T +I V+ GG SAE EVS S V L E G + Sbjct: 4 TVRIGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLG 63 Query: 45 ----------------------------------VDVTQLKSMGFQKVFIALHGRGGEDG 70 D VF LHG GEDG Sbjct: 64 TVTAGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDG 123 Query: 71 TLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQ 130 +QG+LE +G+PY G G++ASA+ MDK+ K + +P P+V + ++ Sbjct: 124 VVQGLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEK 183 Query: 131 LAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTV 190 L L P+ VKP+R GSS+G+S+V + L A+ AF+HD VL+E+ ++G E Sbjct: 184 LVV--GLRGPLFVKPARMGSSIGISRVADGDDLVAAVEEAFRHDHVVLVEQGVTGRELEC 241 Query: 191 AILGE---EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTT 247 +LG E ++ +G ++DY KY D PA L ++ L ++A+T Sbjct: 242 GVLGGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTA 301 Query: 248 LGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +G G R+D + D ++ E NT PG T+HS+ P ++G+++ ++V R++ LA Sbjct: 302 IGGWGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVVDRLVALA 360 >UniRef50_UPI0001AF4ABE D-alanine--D-alanine ligase n=1 Tax=Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191 RepID=UPI0001AF4ABE Length = 301 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 161/306 (52%), Gaps = 14/306 (4%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 K+ VL GG S ER++S+ +G A A L++ G DAY +D +L+ + F AL Sbjct: 2 KKVLVLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDRTLPEKLRQINPDVCFNAL 61 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GEDG++QG+L +MG+PYT SGV AS+++MDK+++K + G+ +A Sbjct: 62 HGPYGEDGSVQGLLNIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIA---------- 111 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 E L D + + P ++KP +GSS+ +A + A+ ++ ++E++ Sbjct: 112 EDQLIDYATYKSMEIPFPYVLKPVNDGSSIATYIFNTPDA-EKLSEQAWIYNTHAMMERY 170 Query: 183 LSGPEFTVAILGEEILPSIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 + G E TV + + + I P FY++ AKY + + + PA + Sbjct: 171 IKGRELTVTVFMNKPVTVTEIIPSTDHQFYNFHAKYDTGGSLHSLPADIPDKAFNICMEN 230 Query: 241 VLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 L LGC+G R D +L+ + G + LE NT PGMT SLVP AG+SF+QLV Sbjct: 231 ALAMHILLGCRGISRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVS 290 Query: 300 RILELA 305 +++ A Sbjct: 291 LLVDEA 296 >UniRef50_C8C0W6 Putative D-alanine-D-alanine ligase n=1 Tax=uncultured organism RepID=C8C0W6_9ZZZZ Length = 343 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 128/346 (36%), Positives = 173/346 (50%), Gaps = 53/346 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP------------------- 42 + KI VL GG S ER+VSL SGA + L G D Sbjct: 4 SMKITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDAFTSDGNF 63 Query: 43 ------KEVDVTQLKSMGF----------------QKVFIALHGRGGEDGTLQGMLELMG 80 + D+ L++ VF+ALHG GEDG++Q L MG Sbjct: 64 MYTVPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSMG 123 Query: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 +PYTGS A ++MDK SKLL++ G+P A + L + + G + LP Sbjct: 124 IPYTGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKKGDSTDG-----------IPLP 172 Query: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPS 200 +VKP GSSVG+S V + AL AL A+Q++E+VL E + G EF+V +L LP+ Sbjct: 173 CVVKPCSCGSSVGVSIVDTKEALAGALETAYQYEEKVLAEDKICGREFSVGVLLGRALPA 232 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I I+P FYDYE KY S T+ CPA L ++ A+L AL LK LG + RID + Sbjct: 233 IEIRPKDGFYDYERKYQSGMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDFIR 292 Query: 261 DSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + G+F LEANT PGMT SL+P A AG+ + L + I + A Sbjct: 293 EEKTGKFICLEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338 >UniRef50_C3PB71 D-alanine--D-alanine ligase n=130 Tax=cellular organisms RepID=DDL_BACAA Length = 304 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 171/303 (56%), Gaps = 8/303 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 +I V++GG S+E++VS+ +G ++A L + + P+ E K+ +AL Sbjct: 1 MRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLAL 60 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG+ GEDGT+QG LE +G+PY+GS +++S + MDK SK + + G+ W+ LT+ E Sbjct: 61 HGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKME- 119 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 D E+ LG P++VKP+ GSSVG+ V ++ L L F+ D EV+IEK+ Sbjct: 120 -----DLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEWDSEVVIEKY 174 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + G E T +I + LP I I+ + F+DY AKY T L A + + L Sbjct: 175 IKGEEITCSIFDGKQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASL 233 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 + L C + R+D+M+ DG Y++E NT PGMT SL+P +A AG+ +S+L+ I+ Sbjct: 234 ACYKALKCSVYARVDMMV-KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMII 292 Query: 303 ELA 305 E + Sbjct: 293 ETS 295 >UniRef50_C7QH14 D-alanine/D-alanine ligase n=2 Tax=Actinomycetales RepID=C7QH14_CATAD Length = 394 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 112/375 (29%), Positives = 164/375 (43%), Gaps = 73/375 (19%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLR----------------EGGIDAYPVDPKEVDV 47 ++AV+ GG S+E +S + +VL LR G P D+ Sbjct: 12 RVAVVFGGRSSEHAISCVTAGSVLDALRNGPEPQRYEIVPIGIASDGRWVLADLPDGGDL 71 Query: 48 TQLKSMG------------------------------------------FQKVFIALHGR 65 + G V LHG Sbjct: 72 NLAITDGRLPEIGLPASAERANLVTMAGDPTARELTVHEPGAVPKSLGEVDVVLPLLHGP 131 Query: 66 GGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKG 125 GEDGTLQG+LEL G+PY GSGV+ASA+SMDK K L AG V P+ + ++ Sbjct: 132 YGEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYEVVRPRDWGTE 191 Query: 126 LSDKQLAEI-SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 + LG PV VKP+R GSS+G++KV A L A+ A +HD +VL+E + Sbjct: 192 EGRAAVRLAVEELGYPVFVKPARAGSSMGITKVDAPEELDQAIDAARRHDPKVLVEAAIE 251 Query: 185 GPEFTVAILGE-------EILPSIRIQP--SGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 G E +L E ++ FYD++AKYL T+ PA L A + Sbjct: 252 GREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLDGSTEVDIPARLSAEEIE 311 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSD-----GQFYLLEANTSPGMTSHSLVPMAARQA 290 +++ + + TLGC+G R+D G+F + E NT PG T S+ P + A Sbjct: 312 DIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFTPTSMFPQMWQAA 371 Query: 291 GMSFSQLVVRILELA 305 G+S+ +L+ R+++ A Sbjct: 372 GLSYPELIARLIDTA 386 >UniRef50_Q1LT82 D-alanine--D-alanine ligase n=151 Tax=Bacteria RepID=DDL_BAUCH Length = 375 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 109/351 (31%), Positives = 166/351 (47%), Gaps = 50/351 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL----------- 50 ++ ++ GG SAE EVSL S ++ + E + + + Sbjct: 3 KLRVGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIYGE 62 Query: 51 --------------------------------KSMGFQKVFIALHGRGGEDGTLQGMLEL 78 + + +F +HG GEDG LQG+L + Sbjct: 63 NETYIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLLRM 122 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 LP+ GS V+ SA+SMDK +K L + A L V P + LTR E D+ + LG Sbjct: 123 ANLPFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQIIT---YLG 179 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-- 196 + VKP+ +GSSVG+SKV+ + AL LAF D++VL+E ++G E A+LG Sbjct: 180 SSLFVKPANQGSSVGVSKVINRISFDQALALAFCFDDKVLVESAINGRELECAVLGNHDP 239 Query: 197 -ILPSIRIQPSGTFYDYEAKYLSD-ETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 I S FY YE KYL++ PA + N+Q + ++A+ L C G Sbjct: 240 QASLCGEIVLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMA 299 Query: 255 RIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+DV L ++ + + E NTSPG TS S+ P + +G+S+ L+ R++ELA Sbjct: 300 RVDVFLTTNNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIELA 350 >UniRef50_UPI0000E87C25 D-alanylalanine synthetase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C25 Length = 302 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 128/302 (42%), Positives = 182/302 (60%), Gaps = 9/302 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 K+AVLLGG S ERE+SL SG AVL L + ++A+ +DPK +++L +VFI LH Sbjct: 8 KVAVLLGGESNEREISLQSGQAVLTSLLQSKVNAFGLDPKFEPLSKLAE--CSRVFICLH 65 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G+ GEDG +Q L+ + +PYTGSG AS L MDKL SK +W+ + +V L Sbjct: 66 GKDGEDGKIQSYLDDIKIPYTGSGFHASKLGMDKLLSKNIWKKLKINTPNFVRLEEGMTY 125 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 LG +K + GSS+G+SKV Q A A++ D V+ E + Sbjct: 126 D-------EVCKNLGSSFFIKAANSGSSIGISKVTKPQQYQAAFESAYKVDNTVIAEMMI 178 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 G EFT+ IL L + I+P FYDYEAKY D+T++ CPA L+ + L +K Sbjct: 179 FGEEFTLPILDSSPLSIVEIRPKTDFYDYEAKYHRDDTEFICPAKLDKVLVDKINQLGMK 238 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ LGC GWGR+D M+++ + +++E NT PGMTSHSLVPM+A+Q+G+SF LV+++L+ Sbjct: 239 AFNALGCSGWGRVDFMINNQNEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLD 298 Query: 304 LA 305 A Sbjct: 299 TA 300 >UniRef50_P29753 Vancomycin C-type resistance protein vanC n=48 Tax=Enterococcus RepID=VANC_ENTGA Length = 343 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 111/341 (32%), Positives = 154/341 (45%), Gaps = 40/341 (11%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL------------ 50 KIAVL GG S E VSL S A+V+ + + + Sbjct: 2 KKIAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDT 61 Query: 51 ----------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 K + +F LHG+ GEDG +QG+LELM LPY G V Sbjct: 62 WLEDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHV 121 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSRE 148 ASAL M+K L G+ AP + L+R E + D+ + G P+ +KP+ Sbjct: 122 AASALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQ---DHGFPIFIKPNEA 178 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR---IQP 205 GSS G++KV + ALQ AL AF + VLI+K ++G E ILG E L I Sbjct: 179 GSSKGITKVTDKTALQSALTTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISL 238 Query: 206 SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ 265 F+D+E KY PA L + E+ ++ + LG G RID + + G Sbjct: 239 VDGFFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQGA 298 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 YL E NT PG T HS P + G+S+ LV +++ LA+ Sbjct: 299 IYLNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALAE 339 >UniRef50_Q8DLH0 D-alanine--D-alanine ligase n=2 Tax=Chroococcales RepID=DDL_THEEB Length = 343 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 109/336 (32%), Positives = 158/336 (47%), Gaps = 32/336 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLA----GLREGGIDAYPVDPKEVDVTQLKS----- 52 ++ +L GG S E EVS+ S AA+ G + P+ ++ + Sbjct: 3 RLRVGLLFGGRSREHEVSVVSAAAIAQAFAAGDNGDRYEVIPIYIEKDGRWRHTERVGIP 62 Query: 53 ----------------MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMD 96 F +HG GEDGT+QG+LELM PY GSGV ASA+ MD Sbjct: 63 EGTAPESSLWQFPAVVDTIDVWFPIVHGPNGEDGTIQGLLELMQRPYVGSGVAASAIGMD 122 Query: 97 KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQL---AEISALGLPVIVKPSREGSSVG 153 K+ K ++ GLP P+VAL R++ + LG P VKP+ GSSVG Sbjct: 123 KILMKTVFGAIGLPQVPYVALQRSDLWSDPCRYNHLCDRIETELGYPCFVKPANLGSSVG 182 Query: 154 MSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGTFY 210 +SK L AL +A + D +++E + E A+LG + I S FY Sbjct: 183 ISKAKNRQQLTTALEVAAELDRRIIVEAGVVARELECAVLGNDKPQASVVGEITYSSEFY 242 Query: 211 DYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM-LDSDGQFYLL 269 DYE KY Q PA + + +++L L+A+ LG G R D + S G+ + Sbjct: 243 DYETKYTDGRAQLHIPAEIPPAVSEQIRSLSLQAFQALGAAGLARFDFFYVPSTGEVLIN 302 Query: 270 EANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 E NT PG T+ S+ P +G+SF +LV R+++LA Sbjct: 303 EVNTLPGFTALSMYPQLWAASGLSFPELVHRLVQLA 338 >UniRef50_A6P076 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P076_9BACE Length = 350 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 112/349 (32%), Positives = 162/349 (46%), Gaps = 53/349 (15%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD--------------------- 41 KI VL GG S ER VSL++G V L G + VD Sbjct: 1 MKIVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPIS 60 Query: 42 -------PKEVDVTQLKSMG------------------FQKVFIALHGRGGEDGTLQGML 76 + D+ +K+ VF+ALHG GEDG +Q Sbjct: 61 EEHKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAF 120 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 +LMG+PYTGSG + SA++MDK +K + + W ++ +D + Sbjct: 121 DLMGIPYTGSGYLGSAIAMDKDLTKRMVADV-VSTPGWKTVS------YTADDIDGLVET 173 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE 196 LP++VKP GSS+G+S L+ AL ++E+++ G E VAIL ++ Sbjct: 174 ARLPLVVKPVASGSSIGVSIAHTAEELRTALTEGLALGGRTVLEQYVKGRELQVAILEDK 233 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 LPSI I P FYDYE KY + CPA + E L+ ++ + TLG + R Sbjct: 234 ALPSIEIIPKQGFYDYENKYQPGAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSRA 293 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D +LD+DG+ + LE NT PGMT SLVP A G+ ++ L RI++ + Sbjct: 294 DFILDADGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDAS 342 >UniRef50_C3RJR8 D-alanine-D-alanine ligase B n=3 Tax=Bacteria RepID=C3RJR8_9MOLU Length = 346 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 160/343 (46%), Gaps = 38/343 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA-----------YPVDPKEVDVTQ 49 M K+ VL GG S+E VS S +VL L + + +D K+ D+ + Sbjct: 1 MKQKLLVLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAK 60 Query: 50 LKSMG--------------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSM 95 + F LHG GEDGT+QG+ EL LPY G VM S+++M Sbjct: 61 NTWLDNSSMVEDVYGLLKNQDVAFPVLHGMYGEDGTIQGLFELAKLPYVGCRVMGSSVAM 120 Query: 96 DKLRSKLLWQGAGLPVAPWVALTRAEFE---------KGLSDKQLAEISALGLPVIVKPS 146 DK+ +K + G+P V + + E + + + + LG+P +K S Sbjct: 121 DKIYTKKILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEIEDYIVRELGMPCFIKAS 180 Query: 147 REGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRI 203 R GSSVG + + L L A ++D V++E+ + E A+LG + + +I Sbjct: 181 RSGSSVGCYRCDNQTELIGKLSEAAKYDRHVVVEECIDCIELETAVLGNDDVIVSRVGQI 240 Query: 204 QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD 263 P G FY +E+KY +E++ PA ++ + ++ +K + + G R+D LD Sbjct: 241 MPHGEFYTFESKYEDEESKTCIPALVDEQIQEQIRQYAIKVFKAVDGHGLSRVDFFLDKK 300 Query: 264 -GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + YL E NT PG T S+ P G+++ +L+ R++ LA Sbjct: 301 TNKIYLNEINTMPGFTKISMYPQLMNDFGITYPELLDRLIVLA 343 >UniRef50_C0ZKB3 Ligase n=12 Tax=Bacteria RepID=C0ZKB3_BREBN Length = 350 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 155/350 (44%), Gaps = 49/350 (14%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT----------- 48 M +A+L GG S+E EVSL S ++VL L + + Sbjct: 1 MKKLTVAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIR 60 Query: 49 ------------------------------QLKSMGFQKVFIALHGRGGEDGTLQGMLEL 78 + VF LHG+ GEDGT+QG+LEL Sbjct: 61 NDSWHQSEKCVPAFLSPCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGLLEL 120 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 G+P+ G ++SA+ MDK + L +G+G+ VA+ A LG Sbjct: 121 AGIPFVGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAVYP----NTDLATVQAATEPLG 176 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 P+ VKP++ GSS+G++K + + L + A QHD++V+IE+ ++G E A+LG + Sbjct: 177 FPLYVKPAKAGSSIGITKAYSLSELFFGIENALQHDDKVVIEENITGFEVGCAVLGNREV 236 Query: 199 PSIRIQPSG---TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 + F+DY KY + PA ++ ++ + GC+G+ R Sbjct: 237 IVGEVDEIELLQGFFDYTEKYSLETAHIHVPARIDEELAHKIKQTATHLYQVFGCRGFAR 296 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +D+ + DG E NT PG TS S P R AG+S+ +L+ ++ LA Sbjct: 297 VDMFVTPDGDIVFNEVNTIPGFTSKSRYPSMLRAAGISYKELLDTLIMLA 346 >UniRef50_Q4FPK8 D-alanine--D-alanine ligase n=3 Tax=Candidatus Pelagibacter RepID=DDL_PELUB Length = 304 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 114/307 (37%), Positives = 168/307 (54%), Gaps = 7/307 (2%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 MT KI +L GG S ER +SL++G V L + G +P + + S +F Sbjct: 1 MTKKILILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFN 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG+ GEDG +Q +LE +PYT SGV+AS+++MDK SK ++ + ++ Sbjct: 61 ALHGQFGEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFN-- 118 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 +K + L PV+VKP EGSSV + N L++ L++ + E+LIE Sbjct: 119 -HKKNKLNIIKLIEKNLKFPVVVKPINEGSSVHVYICDKTNILKN-LKVLKSY-NEILIE 175 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY-LSDETQYFCPAGLEASQEANLQA 239 +++ G E VAI+ + L +I ++P FYDYEAKY S +T++ P L + A + Sbjct: 176 EFIPGREIQVAIMNNKSLGAIELEPRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITG 235 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + A +GCKG R D +G+FYLLE NT PGMT SLVP A+ G+SF +L+ Sbjct: 236 IARAAHKIIGCKGVTRSDFKF-FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIE 294 Query: 300 RILELAD 306 IL+ A Sbjct: 295 WILKDAS 301 >UniRef50_A0PQ03 D-alanine--D-alanine ligase n=49 Tax=Actinomycetales RepID=DDL_MYCUA Length = 373 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 106/362 (29%), Positives = 158/362 (43%), Gaps = 64/362 (17%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQ----- 56 ++AV+ GG S E +S S ++L L + + L Sbjct: 10 RLRVAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAIT 69 Query: 57 ------------------------------------------KVFIALHGRGGEDGTLQG 74 VF LHG GEDGT+QG Sbjct: 70 DRRLPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQG 129 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 +LEL G+PY G+GV+ASA MDK +K LW AGLP+ P L + E+ Sbjct: 130 LLELAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPS-----RQSLDREEL 184 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG 194 LGLP VKP+R GSS+G+S+V + + L A+ A +HD +V++E ++G E +L Sbjct: 185 QRLGLPAYVKPARGGSSIGVSRVSSFDELPAAIAAARRHDPKVIVEAAINGRELECGVLE 244 Query: 195 E-----EILPSIRIQP------SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 E I+ FYD+E KYL D + PA +E ++ L ++ Sbjct: 245 FPDGRLEASTLGEIRVAGVRGREDGFYDFETKYLDDAAELDVPAKVEDDVADAVRQLAIR 304 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ + C+G R+D L DG + E NT PG T+ S+ P +G+ + L+ ++E Sbjct: 305 AFEAIDCQGLARVDFFLTDDG-PVINELNTMPGFTTISMYPRMWVASGVDYPTLLATMVE 363 Query: 304 LA 305 A Sbjct: 364 TA 365 >UniRef50_C7H0K0 D-alanine--D-alanine ligase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0K0_9FIRM Length = 359 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 160/331 (48%), Gaps = 30/331 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-----------VDVTQL 50 +AV+ GG S E E+S S + GLRE + + +D T+L Sbjct: 8 KKSVAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVDDGIIDFTKL 67 Query: 51 KSM-------------GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK 97 V+ LHG GEDG +QG+ E+ +PY G V ASA++MDK Sbjct: 68 DVKNEAESCTIEQCLTDVDIVWSVLHGPYGEDGKIQGLFEMYDVPYVGCNVTASAIAMDK 127 Query: 98 LRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKV 157 + +K +++ AGL + L E+ +++L I LG P+ VKP+ GSSVG+SK Sbjct: 128 VIAKNVFEHAGLKTVKYELLLEKEYRDD-EERELERIEKLGFPMFVKPANMGSSVGISKA 186 Query: 158 VAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPSGTFYDYEA 214 E L+ A+ AFQ+D ++IE+ + G E VA+ G E + I+P FYD +A Sbjct: 187 TDEKKLKKAIEDAFQYDYRLIIEENIIGKEVEVAVFGNGPYEASVAGEIRPRAEFYDVDA 246 Query: 215 KYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID-VMLDSDGQFYLLEAN 272 KY S +T PA + Q LQ A + CKG R+D + + ++ E N Sbjct: 247 KYHSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGICRVDSFIKADSNEIFINEVN 306 Query: 273 TSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 T PG T S+ P +G+S +L+ RI+ Sbjct: 307 TMPGFTEISMYPKLWEVSGISNKELLERIIN 337 >UniRef50_A8SD66 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD66_9FIRM Length = 364 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 105/350 (30%), Positives = 159/350 (45%), Gaps = 46/350 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT------------- 48 +A+L GG S+E EVS S + + + V + Sbjct: 6 KMCVALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADG 65 Query: 49 -----------------------------QLKSMGFQKVFIALHGRGGEDGTLQGMLELM 79 +++ M V LHG GEDGT+QG+LEL Sbjct: 66 SWEELPGNMPCVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLELA 125 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 G+ Y G GV+AS++ MDK + L++ G+P WVA R E EK L LG Sbjct: 126 GIAYVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGW 185 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE--- 196 PV VKP+ GSSVG+SKV + L+ A+ LA ++D +V+ E ++ G E A++G + Sbjct: 186 PVFVKPANAGSSVGISKVSNQEELKAAIALALENDRKVVFEAFVDGQEVECAVIGSDPAV 245 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 I FY Y+ KY + +Q PA L ++ ++ A+T L C+G R Sbjct: 246 ATRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGLARC 305 Query: 257 DVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D ++ + G+ + E NT PG T+ S+ P G+ QL+ R++ LA Sbjct: 306 DFFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALA 355 >UniRef50_B4D1Z2 D-alanine/D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B4D1Z2_9BACT Length = 315 Score = 333 bits (854), Expect = 5e-90, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 171/310 (55%), Gaps = 20/310 (6%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 KIAVL+GG +ER+VSL SGA V LR G D VD D + G F Sbjct: 14 NKKIAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDVNGSDF--IVPAGTDVAFNV 71 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 +HG GEDG +Q +LE G+ YTG GV S L++DK+ +K +Q +P A + L Sbjct: 72 IHGTFGEDGQIQRILESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEILRDG- 130 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 L LP +VK +EGSSVG+ V E + D +R A+ + +E+L+E Sbjct: 131 -----------ANPTLPLPYVVKAPKEGSSVGVFIVREEAKVADTMREAWSYGKELLVED 179 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY------LSDETQYFCPAGLEASQEA 235 +++G E TV +LG++ LP I I+P+ FY+++ KY ++ CPA + Sbjct: 180 FINGRELTVGVLGDQALPIIEIKPAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTR 239 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 +Q + L A + + + R+DV+L G+ Y+LE NT PGMT SL+P AA AG+S++ Sbjct: 240 RVQEVALAAARAIHLETYCRVDVLLTGAGEPYVLEINTIPGMTQVSLLPEAAAAAGISYA 299 Query: 296 QLVVRILELA 305 +L R++EL+ Sbjct: 300 ELCARVIELS 309 >UniRef50_Q73JN2 D-alanine--D-alanine ligase n=2 Tax=Treponema RepID=DDL_TREDE Length = 368 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 167/353 (47%), Gaps = 51/353 (14%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL------------ 50 IA++ GG S+E EVSL S ++++ + + + + + L Sbjct: 1 MNIAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKN 59 Query: 51 -------------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELM 79 + + VF LHGR GEDGT+QG+ E+ Sbjct: 60 EKAVLKIKKDEAKRVTVIPGGGAKKGLKAGDEFLPTDAVFAVLHGRFGEDGTIQGLFEMA 119 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQL--AEISAL 137 LPY G VM++++SMDK ++K++W +GLP+ P++A+ R +++ K + L Sbjct: 120 DLPYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKAILARAEKDL 179 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE- 196 P+ +KP R GSSVG V N L + +F D ++L+E + E ++ G Sbjct: 180 EYPLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWDNKILVEACIEAREVECSVTGNTK 239 Query: 197 --ILPSIRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 I P+ FYDYEAKY + + PA L +Q ++ +KA+ L G Sbjct: 240 TVAYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGL 299 Query: 254 GRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D +D G+ YL E NT PG T+ S+ P +G+ +++L++ ++ELA Sbjct: 300 SRVDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMHLIELA 352 >UniRef50_A7HNE8 D-alanine--D-alanine ligase n=8 Tax=Thermotogaceae RepID=DDL_FERNB Length = 316 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 178/314 (56%), Gaps = 17/314 (5%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG-FQKVFIALH 63 + VLLGG S ERE+S+ SG + LR G +D + + +L + + +F LH Sbjct: 3 LGVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSELKKYDALFNILH 62 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQG--------AGLPVAPWV 115 G GEDG +Q +L+ +G+PYTGSGV S ++ DK L + + + + ++ Sbjct: 63 GTFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFL 122 Query: 116 ALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE 175 ++ EFE+ K +GLP +VKP +EGSS+G ++ L DAL+ F++ + Sbjct: 123 LISSEEFEES---KIYMIEEKIGLPCVVKPRKEGSSIGTHICFSKEELLDALKNEFKNYD 179 Query: 176 EVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEA 231 E+++++++ G E TV+++ +LP + ++P FYDYEAKY T++ PA L+ Sbjct: 180 EMIVQEYIKGKEITVSVIDINGTPTVLPILELRPKKLFYDYEAKYTDGMTEFIIPAELDG 239 Query: 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 + VLK + +LGCK + RID ++ DG FY LE NT PGMT S +PM+A G Sbjct: 240 ETTEKINHAVLKIYKSLGCKHFSRIDGIV-KDGVFYFLEVNTLPGMTELSDLPMSANAFG 298 Query: 292 MSFSQLVVRILELA 305 +SF +LV I++ A Sbjct: 299 ISFDELVDLIIKEA 312 >UniRef50_A6TUG2 D-alanine--D-alanine ligase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUG2_ALKMQ Length = 358 Score = 332 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 164/343 (47%), Gaps = 38/343 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-----------EVDVTQ 49 M + VL GG S E VSL S +A++ L + YP+ E ++ + Sbjct: 1 MKTNVYVLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIWSNLGIVEDEIKE 60 Query: 50 LKSMGFQ-----------------------KVFIALHGRGGEDGTLQGMLELMGLPYTGS 86 + + +Q VF ALHG GEDGT+QG+LE++ +PY G+ Sbjct: 61 ISELMYQSSNTVISSIETFLRSSFNEREQNIVFPALHGTNGEDGTIQGLLEILDIPYVGN 120 Query: 87 GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPS 146 GVM+SA+ +DK+ +K L+ +P + L + +++K +G P VKP+ Sbjct: 121 GVMSSAIGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEETIGYPAYVKPA 180 Query: 147 REGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRI 203 GSSVG+++ L+ A+ AF +++++IE+ + G E ++++G E Sbjct: 181 SLGSSVGINRCANREELEAAIHEAFSFEDKLVIEEEIIGREMQISVVGNEFPKASVVGEF 240 Query: 204 QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD 263 F DY AKY + PA L ++ + +K++ L C G R+D + D Sbjct: 241 IQERQFMDYAAKYTDGKLIQVIPAKLTEKVSELMREVAIKSFDVLNCSGLVRVDYFVTDD 300 Query: 264 GQFYLLEANTSPGMTSHSLVPMAARQAG-MSFSQLVVRILELA 305 +FY+ E NT PG T S+ P + ++ +L+ +++ LA Sbjct: 301 ERFYVNEVNTMPGFTKLSMTPALWEKTDQTTYPELIEKLINLA 343 >UniRef50_C7H403 D-alanine--D-alanine ligase A n=2 Tax=root RepID=C7H403_9FIRM Length = 365 Score = 332 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 153/347 (44%), Gaps = 46/347 (13%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT---------------- 48 + VL GG S+E EVS S + L + V Sbjct: 10 VVVLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMADGSWE 69 Query: 49 --------------------------QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLP 82 Q++ + V ALHG GEDGT+QG+LEL G+P Sbjct: 70 ELPGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGLLELAGIP 129 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y G GV+ASA+ MDK + L+ AG+P W++ R E E L I+ LG P+ Sbjct: 130 YVGCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRWEIESDLDGVCDGAIAKLGWPIF 189 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILP 199 VKP+ GSSVG++K + L+ A+ LA ++D +V+ E ++ G E A++G + Sbjct: 190 VKPANAGSSVGITKAHDRDELKQAIALALENDHKVVFEAFVDGHEVECAVIGSDPAVATR 249 Query: 200 SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 I FY Y+ KY + +Q PA L + ++ A+T L C+G R D Sbjct: 250 PGEILAGAEFYTYDDKYKNGVSQVVIPARLSEEKLDEVKTYAAMAYTALNCEGLARCDFF 309 Query: 260 LD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ + + E NT PG T S+ P G L+ ++ELA Sbjct: 310 VEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHLIELA 356 >UniRef50_Q163J4 D-alanine--D-alanine ligase n=14 Tax=Alphaproteobacteria RepID=DDL_ROSDO Length = 319 Score = 332 bits (853), Expect = 8e-90, Method: Composition-based stats. Identities = 122/307 (39%), Positives = 158/307 (51%), Gaps = 15/307 (4%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 K+AVLLGG S EREVSL+SG A A LR+ G D +D +L G V L Sbjct: 22 PKVAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCL 81 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HGR GEDG +QG+LE MG+PY+ SGV+ASAL+MDK RSK + AGLPV P V A+ Sbjct: 82 HGRWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADV 141 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 G + P +VKP+ EGSSVG+ V L +EV++E + Sbjct: 142 RMG---------HVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQLSE--DMPQEVMVEAF 190 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 G E T ++G+ L I +YDY+AKY + + PA + A L Sbjct: 191 APGRELTTTVVGDRALTVTDIVT-DGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYAL 249 Query: 243 KAWTTLGCKGWGRIDVMLDSDG---QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 +A LGC+G R D D LLE NT PGMT+ SL P A GM+F +L Sbjct: 250 RAHHALGCRGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCA 309 Query: 300 RILELAD 306 ++E A Sbjct: 310 WMVEDAS 316 >UniRef50_Q07PS7 D-alanine--D-alanine ligase n=28 Tax=Alphaproteobacteria RepID=DDL_RHOP5 Length = 308 Score = 332 bits (852), Expect = 9e-90, Method: Composition-based stats. Identities = 118/314 (37%), Positives = 171/314 (54%), Gaps = 17/314 (5%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKV 58 MT + +AVLLGG S+EREVSL SG A L G + +D T L + Sbjct: 1 MTKRKHVAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARDIATVLDQLRPDSA 60 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 + LHG GEDG++QG+LE + +PY+ SGV+ASAL+M K +K + + AG+PVA + L+ Sbjct: 61 LMMLHGHPGEDGSIQGVLETLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLS 120 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENAL--QDALRLAFQHDEE 176 R E +G + P ++KP +GSSVG+ + ++ Q+ R + + ++ Sbjct: 121 RDEIARG---------HVMEPPYVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDK 171 Query: 177 VLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 +L+EK+++G E T A++ E I I P FYDYEAKY +++ PA L Sbjct: 172 LLVEKYVAGKELTCAVVKGEPTDVIEIVPMVRFYDYEAKYSPGASKHVLPASLLPFVYQE 231 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSD----GQFYLLEANTSPGMTSHSLVPMAARQAGM 292 ++ L L A LGC+G R D D G LE NT PGMT SLVP A AG+ Sbjct: 232 VRRLTLAAHVALGCRGVSRADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGI 291 Query: 293 SFSQLVVRILELAD 306 +F +LV ++E A Sbjct: 292 TFDELVQWMVEDAS 305 >UniRef50_A9KKE7 D-alanine--D-alanine ligase n=9 Tax=Clostridiales RepID=A9KKE7_CLOPH Length = 353 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 153/346 (44%), Gaps = 43/346 (12%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL----------- 50 I VL GG S+E EVS S V+ + D V + L Sbjct: 3 KKTIVVLFGGQSSEHEVSCVSAVTVINHIDLDHYDIVLVGITKEGKWLLTGSVEDITSGV 62 Query: 51 ---------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPY 83 + VF LHG GEDGT+QG+LEL G+PY Sbjct: 63 WRDGKKTAILSPDRSKPSLLIMEDNKVEYQKVDVVFPVLHGLFGEDGTVQGLLELAGVPY 122 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 G GV+AS++SMDKL +K++ G+ A + + E E+ + + PV + Sbjct: 123 VGCGVLASSVSMDKLYTKIIVDSLGIRQAAYEPVYAKELEEMN-KVVERIENRISYPVFI 181 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPS 200 KPS GSS G++K + L L+ A +HD ++L+E+ + G E A+LG + Sbjct: 182 KPSNAGSSKGITKAHNRDDLIVGLKEAAEHDRKILVEETIVGREIECAVLGGMEAKASGV 241 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I + FYDY+AKY + +++ L + + +K + + R+D L Sbjct: 242 GEILAAAEFYDYDAKYNNADSKTIISPELPEGKAQEISDAAVKIFRAVDGYSLSRVDFFL 301 Query: 261 DSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + D + E NT PG T+ S+ PM G++ QLV ++++ A Sbjct: 302 EKDTNEIVFNEINTLPGFTAISMYPMLWEAKGIAKPQLVEKLIQTA 347 >UniRef50_A6W7R2 D-alanine--D-alanine ligase n=9 Tax=Actinobacteria (class) RepID=DDL_KINRD Length = 376 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 166/364 (45%), Gaps = 61/364 (16%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP------------VDPKEVDVT- 48 ++AV+ GG S+E +S + A VLA L D P DP ++T Sbjct: 6 KPRVAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTD 65 Query: 49 ----------------------------------QLKSMG-FQKVFIALHGRGGEDGTLQ 73 L +G V LHG GEDGTLQ Sbjct: 66 GALPEVPATGTPVGLPLDVDTKALQRLGGAPGAPALAELGEVDVVLPLLHGPFGEDGTLQ 125 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 G+LEL Y GSGV+ASA MDK KLL G GLPV PW + ++ D +AE Sbjct: 126 GLLELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDR-DGVVAE 184 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL 193 + ALG PV VKP+R GSS+G+++V + L A+ A HD +V++E L G E +L Sbjct: 185 VEALGYPVFVKPARAGSSIGITRVTSREGLAAAVAEAVSHDPKVVVEAALVGREIECGVL 244 Query: 194 GEEIL--------PSIRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKA 244 + + + FYD+EAKYL + CPA L A ++ ++ Sbjct: 245 EDLDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCPADLPDDVVAAVRRTAVRV 304 Query: 245 WTTLGCKGWGRIDVMLDS---DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 + +G +G R+D+ +D + + E NT PG T S+ P G+ + +LV R+ Sbjct: 305 FEAMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRL 364 Query: 302 LELA 305 ++LA Sbjct: 365 IQLA 368 >UniRef50_C5CFD6 D-alanine/D-alanine ligase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFD6_KOSOT Length = 305 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 170/309 (55%), Gaps = 17/309 (5%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG-FQKVFI 60 +I VL GG S ER +SL SG+ V+ L + G D + ++T+L + VFI Sbjct: 5 RRRITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAFDLRADNITELAKLRDTDLVFI 64 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG+ GEDG +Q +LEL G+ Y GS + SA+ +K + L + + W +T Sbjct: 65 ALHGKFGEDGKIQSLLELFGIEYIGSDSLVSAICFNKNLTYKLL-SNTITMPRWKTITSE 123 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 E +G P ++KP+ EGSS+G+ LQ+ + + +++E Sbjct: 124 EELEGWK----------HFPAVIKPANEGSSIGVYICDTFEELQNKTTKVLKEYKTLILE 173 Query: 181 KWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 +++ G E T++I+ + +LP + ++P FYDYEAKY + T++ PA ++ + Sbjct: 174 EYIKGRELTISIIEKGGQPVVLPILELKPKRRFYDYEAKYTAGLTEFIVPAPIDDKLKEE 233 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 ++ L + +T LGC+ + RID +L + QFY LE NT PG+T S +P++AR AGM F + Sbjct: 234 IKKLSKRIFTALGCRHFARIDGIL-KENQFYFLEVNTIPGLTDLSDLPVSARAAGMGFEE 292 Query: 297 LVVRILELA 305 L+ I++ A Sbjct: 293 LIDLIVKEA 301 >UniRef50_A5VIS1 D-alanine--D-alanine ligase n=25 Tax=Lactobacillales RepID=DDL_LACRD Length = 378 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 104/347 (29%), Positives = 162/347 (46%), Gaps = 47/347 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV--------------------D 41 IA+L GG S+E +VS S + L + D + Sbjct: 4 KLHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGE 63 Query: 42 PKEVDVTQL-----------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 P++ V + + F +HG GEDGT+QG+ +L+ PY Sbjct: 64 PEDQVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYV 123 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 GS + ASA+S DK +K + AG+ P+V +T E LG VK Sbjct: 124 GSNIAASAMSFDKDLTKKIISQAGIRNTPYVVVTP---ENQADYSWGRIEEKLGNLTFVK 180 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL-SGPEFTVAILGEEI-----L 198 P+++GSSVG+ +V + AL AF++D ++L+E+ + + E ++ILG E L Sbjct: 181 PAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIASKL 240 Query: 199 PSIRIQPSGTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 ++R+ FYDYE K++ + P L + + LKA+ LG KG RID Sbjct: 241 GAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARID 300 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 ++DS+ YL E NT PG T+ SL P +G+S+S L+ R+++L Sbjct: 301 FLVDSNNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 347 >UniRef50_C1TN08 D-alanine--D-alanine ligase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TN08_9BACT Length = 308 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 115/309 (37%), Positives = 161/309 (52%), Gaps = 13/309 (4%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK--EVDVTQLKSMGFQKVFI 60 +I+VL GG S ER VSL+SG V GL+ G +D E + L + F+ Sbjct: 1 MRISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSSPEALFSFLAGDRPELCFV 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GEDG LQ +L++ G+PYTGSG A++MDK SK + AGL V VA+ Sbjct: 61 ALHGGWGEDGRLQAVLDMAGVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDVPWGVAVHPG 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 E + ++VKP GS+V V E+ L+ AL A++ + L+E Sbjct: 121 EGSSPMKALSKWGT------LVVKPCCGGSTVATYIVSEEDELRKALSSAWELENRALVE 174 Query: 181 KWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 +++G E TV ++ + P + I P G FYDY AKY ++Y PA LE S Sbjct: 175 AYVAGRELTVTVVEDRGIPRAFPIVEILPDGEFYDYRAKY-GGGSRYVSPADLEPSVVEV 233 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 + A GC + R+D+ LD + ++LE NT PGMTS+SLVP AA G SF Sbjct: 234 VSRSAEIAHRVSGCSIYSRVDIRLDGKNRPFVLEINTVPGMTSNSLVPKAAMAGGFSFPD 293 Query: 297 LVVRILELA 305 L+ I+E + Sbjct: 294 LLDHIVEES 302 >UniRef50_D1B634 D-alanine/D-alanine ligase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B634_THEAS Length = 316 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 112/310 (36%), Positives = 163/310 (52%), Gaps = 12/310 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD--VTQLKSMGFQKVFI 60 K+ V GG S EREVSL SG AV L G +D V + S F VF+ Sbjct: 1 MKVLVAYGGDSPEREVSLRSGEAVKEALSSLGWTVEGLDADSPLRVVERALSGAFDLVFV 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GEDGTLQ +L+ +PYTG A MDK ++ + G+ V + + Sbjct: 61 ALHGGWGEDGTLQCLLDTHRIPYTGPRWGACMACMDKEITRGVLLARGVRVPEGIPFDGS 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + L + ++VKP R GS+VG+ V + L AL AF++D +++E Sbjct: 121 MDQGVLLELLRRWGR-----LVVKPCRCGSTVGIGIVDHPSRLDRALDEAFRYDRRLVVE 175 Query: 181 KWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 +++ G E TVA+ G + LP++ I+P FYDY +KY T+Y CPA L + Sbjct: 176 RFIEGRELTVAVFDTPEGPKALPTVEIRPRSGFYDYSSKYTKGMTEYLCPAPLSEQEAEA 235 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 + ++A+ +GC + R+DV L+ G+ +LE NT+PGMTS SLVP AA G F Sbjct: 236 VARAAVEAYRAMGCSVYSRVDVRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFP 295 Query: 296 QLVVRILELA 305 +++ RI E + Sbjct: 296 EMLRRICEAS 305 >UniRef50_Q5X1S8 D-alanine--D-alanine ligase n=6 Tax=Legionella RepID=DDL_LEGPA Length = 364 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 105/349 (30%), Positives = 155/349 (44%), Gaps = 44/349 (12%) Query: 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP-----------VDPKEVDV 47 M+ + +L GG S E EVSL S A+VL L P D ++ Sbjct: 1 MSKPVNLVLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLA 60 Query: 48 TQLK--------------------SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 K ++ + VF +HG EDG LQG+LEL G+ Y G Sbjct: 61 CSDKLPVVTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCD 120 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 V++SA+ MDK ++ L GL A + L+ S G P+ VKP Sbjct: 121 VLSSAIGMDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCS 180 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE-------EILPS 200 GSSVG+ K + L A+ A ++DEE+L+E+++ G E +A+L + Sbjct: 181 LGSSVGIHKANNMDELNAAVADALRYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMV 240 Query: 201 IRIQ--PSGTFYDYEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 I+ +Y Y AKYL S +T PA L S E L+ ++ L CKG R+D Sbjct: 241 GEIKVNHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVD 300 Query: 258 VML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + D + Y E NT PG TS S+ P + G+++ L+ ++ LA Sbjct: 301 FFVNDKTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLLDELINLA 349 >UniRef50_UPI000196B158 hypothetical protein CATMIT_00949 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B158 Length = 342 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 102/341 (29%), Positives = 158/341 (46%), Gaps = 40/341 (11%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE------------------ 44 K+ ++ GG S E VS S + + D + Sbjct: 1 MKLLLVCGGQSTEHAVSRMSCVNIYKNADKSKYDIKIAGITKEGEWYDLVSTDFSSDSWL 60 Query: 45 -------VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK 97 T LKS F VF LHG+ GEDGT+QG+LE+ +PY G VMAS +MDK Sbjct: 61 EGATKITDHFTFLKS--FDVVFPVLHGQFGEDGTIQGLLEMAQVPYVGCRVMASCTAMDK 118 Query: 98 LRSKLLWQGAGLPVAPWVALTR---------AEFEKGLSDKQLAEISALGLPVIVKPSRE 148 + +K L+ A +P P + + + + + + ++ + LG P VK SR Sbjct: 119 IYAKKLFDQAHIPQVPSLYVKKRYDDKLVVVDDEGRESFNVEMEIYTHLGFPCFVKASRS 178 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQP 205 GSSVG KV + L L A +D V++EK ++ E A++G + +I P Sbjct: 179 GSSVGCYKVNSLTELLPRLHEAATYDRHVVVEKAINATELECAVIGNDDISASRVGQILP 238 Query: 206 SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-G 264 G FY YE+KY +++ PA ++ S + ++ +KA+ + G R D D+D G Sbjct: 239 HGEFYTYESKYEDEQSATCIPARVDQSIQDYIRQAAVKAFKAVDGTGLARCDFFYDNDTG 298 Query: 265 QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 YL E NT PG T+ S+ P + AG+ L+ +++LA Sbjct: 299 NVYLNEINTMPGFTNISMYPQLMKDAGLDTPALIDELIKLA 339 >UniRef50_C6XGZ9 D-alanine--D-alanine ligase n=2 Tax=Alphaproteobacteria RepID=C6XGZ9_LIBAP Length = 300 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 6 AVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGR 65 AVL+GG S+EREVSL+SG A + L + G +D L + F LHG Sbjct: 2 AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61 Query: 66 GGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKG 125 GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK + G+PV P + + R + Sbjct: 62 FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121 Query: 126 LSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA--LQDALRLAFQHDEEVLIEKWL 183 + P ++KP + GSS+G+ + + + L ++ H +++LIE+++ Sbjct: 122 HL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172 Query: 184 SGPEFTVAILGEEILPSIRI-QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 G E T ++G+ L I P FY YE KY S + + PA + +Q L Sbjct: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232 Query: 243 KAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 A +GC+G R D + D + + LE N PGMT S+ P A AG SF +L++ + Sbjct: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292 Query: 302 LELAD 306 +E A Sbjct: 293 VEDAS 297 >UniRef50_B0TVX5 D-alanine--D-alanine ligase n=10 Tax=Francisella RepID=DDL_FRAP2 Length = 297 Score = 329 bits (844), Expect = 8e-89, Method: Composition-based stats. Identities = 126/306 (41%), Positives = 176/306 (57%), Gaps = 13/306 (4%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-EVDVTQLKSMGFQKVFI 60 +KI VL GG S EREVSL SG AVL L G DA +D + V +L + K FI Sbjct: 3 KEKIVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFI 62 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GE+G + +LEL+G+ +TGS + + ++MDK+ SK + +P LT Sbjct: 63 ALHGEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPMAKFLTDR 122 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 L E + PV VKPS GSS+ KV + L++A + A +H EV+IE Sbjct: 123 ----------LVEADEISFPVAVKPSSGGSSIATFKVKSLEELENAYQQASKHG-EVMIE 171 Query: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 +W++G E TVAI+ ++ S+ I+P FYDYE+KY S ++ Y P+GL +E ++ L Sbjct: 172 QWVTGKEITVAIVNNDVYSSVWIEPLNEFYDYESKY-SGKSIYHAPSGLCEQKELEVRQL 230 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 KA+ LGCKG R+D + D G FY++E N+SPGMT +SL P +A G+ F V Sbjct: 231 AKKAYDLLGCKGHARVDFIYDDKGDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKS 290 Query: 301 ILELAD 306 ILE A Sbjct: 291 ILEQAQ 296 >UniRef50_UPI000050FAD8 D-alanine/D-alanine ligase n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FAD8 Length = 371 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 112/355 (31%), Positives = 165/355 (46%), Gaps = 55/355 (15%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM----------- 53 +AVL GG S+E VS + A V+ + + P+ + V ++ Sbjct: 10 VAVLFGGRSSEHAVSCVTAAGVIRAIADDAYRVLPIGITKAGVWRIVEDWSTMAFDPDNM 69 Query: 54 ----------------------------------GFQKVFIALHGRGGEDGTLQGMLELM 79 F LHG+ GEDGTLQG+ EL Sbjct: 70 PEVVDNGTEIIPPISAQGSPLLQRDAEGNYSELGSVDVYFPLLHGQYGEDGTLQGLFELS 129 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 + GSGV ASA SMDK +K L AG+P PW +T +E ++ Q LGL Sbjct: 130 DTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVTETMWEADQAEAQDRIT-GLGL 188 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---- 195 PV VKP+R GSS+G+S+V + L ALR AF+HD +V++E + G E A+LG Sbjct: 189 PVFVKPARAGSSMGVSRVESAEGLDQALRSAFEHDSKVIVEPQVVGREIECAVLGSVHDR 248 Query: 196 --EILPSIRIQPSGT--FYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGC 250 + I+ SG FYD+EAKYL+ + Q CPA ++ + A +Q L + + C Sbjct: 249 EVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCPARVDETTTARIQELSAQVFRLFDC 308 Query: 251 KGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G R+D + G+ + E NT PG T S P ++G+ + L+ ++ +A Sbjct: 309 TGLSRVDTFVTDAGEVLINEINTLPGFTPTSAYPFMWSKSGIEYPALISELITIA 363 >UniRef50_C9LL63 D-alanine--D-alanine ligase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LL63_9FIRM Length = 311 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 174/312 (55%), Gaps = 13/312 (4%) Query: 1 MTDK---IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV-DVTQLKSMGFQ 56 M K +AVL+GG S E ++S +G A+L L G A V+ + QLK++G + Sbjct: 1 MITKNNTVAVLMGGVSREADISRKTGTAILQALLSLGYHAVKVEYNPSCVLKQLKAVGAE 60 Query: 57 KVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVA---P 113 VFIALHG+ GEDGT+Q +LEL +PYTGSGV +SA++MDK+ S +++ AG+ +A P Sbjct: 61 VVFIALHGKYGEDGTIQSILELSKIPYTGSGVSSSAITMDKIISSRVFKDAGVRMAFSKP 120 Query: 114 WVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH 173 + + G+ + PV++KP+ EGS++G+ V + L++AL+ F Sbjct: 121 YYL------KNGIDTVAESIEKNFKFPVVLKPACEGSTIGLEIVYEKEKLKEALKRVFAI 174 Query: 174 DEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQ 233 + +L E +L G EFT+A+L + LP I+I P YD+ +KY S T Y PA L + Sbjct: 175 ESRILAEAYLDGKEFTIAVLNGKALPIIQICPHSGQYDFHSKYTSGATDYIVPAPLPGAA 234 Query: 234 EANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 + + + + C G R D D G +LLEAN+ PGMT SLVP AA GM Sbjct: 235 ADEMTRMAILGYEAAECSGVVRFDFRTDKRGTPFLLEANSIPGMTETSLVPKAAAAIGMD 294 Query: 294 FSQLVVRILELA 305 F L IL A Sbjct: 295 FPSLCENILLKA 306 >UniRef50_A8EXZ8 D-alanine--D-alanine ligase n=17 Tax=Rickettsieae RepID=DDL_RICCK Length = 354 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 161/307 (52%), Gaps = 12/307 (3%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 IA++ GG SAEREVSL S V L G +D +L+ + VF Sbjct: 55 KKHIALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEIKPDIVFNC 114 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG L G+L +M +PYT SGV++SAL+ DK+ S+ + + +A + + +++ Sbjct: 115 LHGTYGEDGCLSGLLNIMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSD 174 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 +I + P ++KP +GSS+G+ + E+ A F + ++V+IEK Sbjct: 175 ---------NIKIEPMKRPYVIKPITQGSSIGIEVIFEEDDFNFA-NYDFPYGDQVIIEK 224 Query: 182 WLSGPEFTVAILGEEILPSIRI-QPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 ++ G E VA+L + L + I FYDYE KY ++ CPA + + L Sbjct: 225 YIKGRELQVAVLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTNLYDKLLIE 284 Query: 241 VLKAWTTLGCKGWGRIDVML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 K + T+ CKG R++ +L D + Y LE NT PGMT S+VP A AG++F+ L+ Sbjct: 285 SEKIYKTMNCKGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIE 344 Query: 300 RILELAD 306 I++ A Sbjct: 345 EIIKAAS 351 >UniRef50_A4A5G2 D-alanine--D-alanine ligase n=2 Tax=unclassified Gammaproteobacteria RepID=A4A5G2_9GAMM Length = 315 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 137/291 (47%), Positives = 176/291 (60%), Gaps = 9/291 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 +IAVL GGTS ER+VSL S VL LR+GG + +D E + + F Sbjct: 10 LRIAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALDTGEPRWWE-RLEDADIAFNIQ 68 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GGEDG QG+L MG+ TGS V+ SAL+MDKLRSK LW+ GLP A + + Sbjct: 69 HGVGGEDGVTQGLLASMGVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMVDAHTD 128 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 L + A +KPS EGSS+GMS+V + + + A A + E +L E++ Sbjct: 129 AAALLSEWGAA--------FIKPSAEGSSLGMSRVDSVDGFKAACEAAAVYGEGILAEEF 180 Query: 183 LSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVL 242 + GPE+TVAILG+ LP IRI+ S FYDYEAKY + T+Y P GL +E L L L Sbjct: 181 IDGPEYTVAILGDRALPPIRIEASREFYDYEAKYKGNSTRYHIPCGLSDGEEETLCRLAL 240 Query: 243 KAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 +A+ LGC WGR+D+M + G+F LLE NT PGMT HSLVPMAA+ AGMS Sbjct: 241 EAFAALGCSIWGRVDLMRNRRGEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291 >UniRef50_Q98JS0 D-alanine--D-alanine ligase A n=2 Tax=Mesorhizobium RepID=DDLA_RHILO Length = 357 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 104/352 (29%), Positives = 157/352 (44%), Gaps = 53/352 (15%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS--------- 52 ++A+L GG SAE +VS S A VL + + P+ +L+ Sbjct: 4 KTRVAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSEAGADGA 63 Query: 53 -------------------------------MGFQKVFIALHGRGGEDGTLQGMLELMGL 81 VF LHG GEDG++QG E+ + Sbjct: 64 GAQVPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAEVADV 123 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 Y G G++ASA +MDK +K L + AGL VA V + + + ALGLP Sbjct: 124 AYVGCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDVGS-----FQEIAGALGLPF 178 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----- 196 KP+R+GSS G+SKV + + A+ A ++D + LIE+++ G E ++L Sbjct: 179 FAKPARQGSSFGVSKVHDRDGFEQAVETALRYDSKALIEEFVDGREIECSVLERADGSLT 238 Query: 197 ILPSIRIQP--SGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 + P I P FY YEAKY + PA + A A + +A+ LGC+ Sbjct: 239 VSPPGEIIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEAM 298 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D L +DG + E NT PG T S+ A AG+ +S+++ ++E A Sbjct: 299 ARVDFFLRADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHA 350 >UniRef50_B2S3Q9 D-alanine--D-alanine ligase n=2 Tax=Treponema pallidum RepID=DDL_TREPS Length = 396 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 112/345 (32%), Positives = 161/345 (46%), Gaps = 47/345 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT--------------- 48 + +L GG SAE +VS+ S V L + V Sbjct: 3 HVTLLYGGRSAEHDVSVRSARFVARTLC-LQHTVMLIGITRRGVWYAQPACALEQLCTGT 61 Query: 49 ------QLKSMGF---------------------QKVFIALHGRGGEDGTLQGMLELMGL 81 + + VF LHG GEDGT+QG+LE++ + Sbjct: 62 VALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVTDVVFPVLHGSYGEDGTVQGLLEMLQV 121 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 PY G GV ASAL+MDK+++K+LWQ AGLPV P+V + + + + + LG P+ Sbjct: 122 PYVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYPL 181 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EIL 198 VKP++ GSSVG S V L A+ AFQ DE VL+E+++ E A+ G + Sbjct: 182 FVKPAQAGSSVGASAVQTRAPLIPAIEAAFQWDEVVLVERYVRAREIECALSGNGPYTVH 241 Query: 199 PSIRIQPSGTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 + + G FYDYE KY + A LE +Q + L L+A+ LG G R+D Sbjct: 242 GAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARVD 301 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 L G+ Y+ E NT PG TS SL P + AG++ L+ ++L Sbjct: 302 FFLLETGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346 >UniRef50_B9Y930 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y930_9FIRM Length = 350 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 111/345 (32%), Positives = 154/345 (44%), Gaps = 46/345 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL----------- 50 +AVL GG S E VSL+S A VL L + L Sbjct: 4 KLNVAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEAD 63 Query: 51 --------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 +++ F LHGR GEDGTLQGM EL +P+ Sbjct: 64 QWHTASDQRLRLTLARRNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFELFHIPFV 123 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 G G+ AS L MDK S L + G+ V+P+V +E D++ + L LP VK Sbjct: 124 GCGMDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEI-----DQKRESLKRLHLPCFVK 178 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI--- 201 P+R GSS+G++K+ L A A +HD +LIE+ +SG E +IL + Sbjct: 179 PARGGSSIGITKINTWEELDAACACAAKHDRRILIEEAVSGEEIGCSILETPDGLVLGAV 238 Query: 202 -RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 RI + F+DYE KY+ + CPA L ++ L K W C+G R+D L Sbjct: 239 DRIHLNSDFFDYEEKYVDTHAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVRVDCFL 298 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D + E NT PGMT+ S P QAG+SF ++ ++E A Sbjct: 299 TPDQRILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEA 343 >UniRef50_Q492J5 D-alanine--D-alanine ligase n=7 Tax=Gammaproteobacteria RepID=DDL_BLOPB Length = 368 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 103/340 (30%), Positives = 162/340 (47%), Gaps = 42/340 (12%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA-----------YPVDPKEVDVTQLKS- 52 I ++ GG S E E+SL S + + + +A + D D++ K Sbjct: 6 IGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKDIDFNDLSYHKDE 65 Query: 53 -----------------------MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 + F +F +HG GEDG LQG+L +M LP+ GS V+ Sbjct: 66 KISILLQNCPYPFKFHTKNINILLKFDVIFPVVHGTLGEDGALQGLLCMMNLPFVGSNVL 125 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 +S++ MDK SK L + AGL V P+ + + D ++ GLP+ VKPS +G Sbjct: 126 SSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSI---FGLPLFVKPSNQG 182 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIR-IQP 205 SS+G+SKV AL AF ++LIE + G E A+LG +I I Sbjct: 183 SSIGVSKVTKCKDFNLALIKAFSFSNKILIEPAIIGRELECAVLGNDNPKISVCGEVILS 242 Query: 206 SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ 265 FY Y KY+ + Q PA + + +++ + L+A+ L C G R+DV L+ D + Sbjct: 243 DNNFYTYHDKYVKRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMARVDVFLNLDNK 302 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ E NT PG T S+ P +G++ +L+ +++ELA Sbjct: 303 IFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELA 342 >UniRef50_A2RI72 D-alanine--D-alanine ligase n=406 Tax=Lactobacillales RepID=DDL_LACLM Length = 349 Score = 326 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 101/338 (29%), Positives = 159/338 (47%), Gaps = 37/338 (10%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------------PVDP 42 + + +L GG SAEREVS+ S +V+ + P + Sbjct: 3 KETLILLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDRPAEE 62 Query: 43 KEVDVTQLKSMGFQ-----------KVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMAS 91 +++ L + VF LHG GEDG++QG LE++ L Y G ++++ Sbjct: 63 EKLLTNDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSA 122 Query: 92 ALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSS 151 + +MDKL +K +++ G+P P+VA E + + L PV VKP+ GSS Sbjct: 123 SSTMDKLLAKHVFEAVGVPQVPYVAAFADE---NQVEIAQEVVEKLDFPVFVKPANMGSS 179 Query: 152 VGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSG 207 VG+SKV LQ AL A+++D V+IE+ + E A+LG + Sbjct: 180 VGISKVDDLADLQPALSEAYKYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDV 239 Query: 208 TFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFY 267 FYDY +KY+ ++ Q PA + A +Q KA+ + G R D + DG Y Sbjct: 240 GFYDYNSKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVTKDGNVY 299 Query: 268 LLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L E N PG T S+ P+ G+S+S L+ ++++LA Sbjct: 300 LNEVNAIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337 >UniRef50_B9E560 D-alanine--D-alanine ligase n=11 Tax=Clostridium RepID=DDL_CLOK1 Length = 297 Score = 326 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 171/304 (56%), Gaps = 9/304 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 K+ +++GG S+EREVSLNSG +++ + + + P+ + + K FIAL Sbjct: 1 MKVGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVFEKVKDIDFAFIAL 60 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG+ GEDG +Q + + M +PY+G + S + MDK SK L A + A W+ + E Sbjct: 61 HGKFGEDGIIQSVFQTMDIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICIKSIEN 120 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + +G PV+VKP+ GSSV + + +++A RLAF +DEEV+IEK+ Sbjct: 121 IDYDY------LEKMGYPVVVKPNSGGSSVATTIIEKSEDIEEAARLAFNYDEEVMIEKY 174 Query: 183 LSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E T IL LP + I+P G+F+DY +KY ++ E ++ ++ + Sbjct: 175 IEGDEITCCILDGTALPILAIKPNKGSFFDYTSKYADGGSEEIV-VEFEKPLQSKIEEIS 233 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 LK W CKG+ R+D++L D Y+LE NT PG+T +SL P +A +SF++L+ +I Sbjct: 234 LKCWELFKCKGYVRVDMIL-KDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELLDKI 292 Query: 302 LELA 305 ++ + Sbjct: 293 IQCS 296 >UniRef50_B5Y8C8 D-alanine--D-alanine ligase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=DDL_COPPD Length = 304 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 158/308 (51%), Gaps = 10/308 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-EVDVTQLKSMGFQKVFIA 61 I VL GGTS ERE+SL SG + A LR G +D V QL + VF A Sbjct: 1 MNIVVLFGGTSPEREISLKSGENIAATLRARGHQVETLDTAVPNFVEQLMQLKPDCVFPA 60 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG +QG+L ++ +PY GS V AS ++MDK +KL+ +G+P ++ + Sbjct: 61 LHGADGEDGKIQGLLSILHIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDPH 120 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 D LG P IVKP GS++G+S V + + + AL AF+ + +L+E+ Sbjct: 121 LVPDYWD----VERKLGSPFIVKPCDVGSTIGLSLVRSASEYEVALEEAFRFSDRLLLEE 176 Query: 182 WLSGPEFTVAI--LGEE--ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 ++ G E TV + LG + +LP I + +DY+ KY ++ + L Sbjct: 177 FIDGFEVTVGLFRLGGDFLVLPPIYVVKPDRIFDYDTKYKPGGAKHVYDLPISVEARERL 236 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 + + +G G R+D ++ D YLLE N+ PGMT+ SLVP R AG F + Sbjct: 237 TSYSKRICKIVGIGGVARLDYIV-KDETPYLLEINSIPGMTAESLVPDEVRHAGRDFGEF 295 Query: 298 VVRILELA 305 + +++ A Sbjct: 296 LEDLIKDA 303 >UniRef50_C6HX62 D-alanine--D-alanine ligase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HX62_9BACT Length = 323 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 162/306 (52%), Gaps = 9/306 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 ++AVL GG S E E+S SG AV LR+ G + + L F+A Sbjct: 12 RRVAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSPDVAFLAT 71 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GGE+GTLQG LE M +PYTGSGV+ASA+ M K+RS+ L++ GL V + Sbjct: 72 HGGGGENGTLQGFLETMKIPYTGSGVLASAIGMSKMRSRALFRERGLAVP-------LTY 124 Query: 123 EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 + + P +VKP GSS+G+ +V+ L DA+ A ++ VL+E+ Sbjct: 125 AHRTEESFNPGYISFDPPYMVKPEAAGSSIGVKRVLRREDLADAVSEAGRYSHWVLVEQL 184 Query: 183 LSGPEFTVAILGEEILPSIRIQPS--GTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 + G E AIL L +I I P FY Y +KY+ +++ PA L + + L + Sbjct: 185 IPGREIQSAILSGRYLGAIEIIPDKAEPFYTYASKYVPGGSRHISPAPLTPDESSELSRI 244 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 ++A L +G R+D +L+ +G F +LE NT PG+T SL+P A G+SF+ L++ Sbjct: 245 TIEACRVLDVRGACRLDTILNDEGVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIE 304 Query: 301 ILELAD 306 ++ A Sbjct: 305 LIATAS 310 >UniRef50_A0Z7C3 D-alanine-D-alanine ligase and related ATP-grasp enzyme n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7C3_9GAMM Length = 309 Score = 325 bits (835), Expect = 9e-88, Method: Composition-based stats. Identities = 138/302 (45%), Positives = 186/302 (61%), Gaps = 9/302 (2%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 + AVL+GG +AERE+SL SG V + L G +DP V+ + VF LH Sbjct: 10 RFAVLMGGAAAEREISLQSGENVASVLEAAGCPVTRIDPA-VEQWADQLSDIDFVFNLLH 68 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GGEDG LQG+ ++M LPY+GSGV+ SAL+MDK R+K LW G GLP + LT Sbjct: 69 GPGGEDGVLQGLFDVMNLPYSGSGVLGSALTMDKARTKQLWSGMGLPTPDFTLLTADTDW 128 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 L ++ + VKP+ EGSS+GMSK L+ A + A + ++ E ++ Sbjct: 129 SDLIERHGT--------LFVKPALEGSSIGMSKASTPEQLEAAWKRARAYKGGIIAECFV 180 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 +G E+TV+ILG+ LP+IRI+P+ FYD++AKY+SD T +FCP+GL AS EA L AL L+ Sbjct: 181 AGEEYTVSILGDRALPAIRIEPASEFYDFDAKYVSDNTGFFCPSGLTASDEAELSALALR 240 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A+ + WGR+DVM D G + LLE NT PGMTSHSLVPMAAR M+ + I Sbjct: 241 AFYAVDAAVWGRVDVMRDISGAWQLLEVNTIPGMTSHSLVPMAARADSMTLIDFLSEIYR 300 Query: 304 LA 305 L+ Sbjct: 301 LS 302 >UniRef50_Q0EYH7 D-alanine--D-alanine ligase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYH7_9PROT Length = 307 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 124/303 (40%), Positives = 163/303 (53%), Gaps = 17/303 (5%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 + VL+GGTSAEREVSL SGAAVL LR G+DA +D ++ Q+ FIALH Sbjct: 13 RTGVLMGGTSAEREVSLRSGAAVLDALRAAGVDAVGIDLQQNWADQIAKAAIDTAFIALH 72 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG +QG+LE+MG+PYTGS VMASAL M+K K + AGL Sbjct: 73 GTLGEDGCVQGLLEIMGIPYTGSHVMASALCMNKRLCKQVLGQAGLSTP----------- 121 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 D ++ PV VKP EGSSVG+ ++ ++ Q L Q + E + Sbjct: 122 ---MDIRIEVTGPERYPVFVKPVAEGSSVGLHRISSQQEWQA---LNIQSPAAWMAEMPV 175 Query: 184 SGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 +G E V++L L + + P YDY +KY T+YFCPA L K Sbjct: 176 NGVEIAVSVLAGVALMPVEVAPKSGVYDYASKYTVGATEYFCPARLPMETVRYCMDCAEK 235 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 A GC G R+D+++ S G+ +LE NT PGMT+ SL+P AA AG+ F L +RILE Sbjct: 236 AVAACGCTGAPRVDMIVGSGGEAVILEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILE 295 Query: 304 LAD 306 A Sbjct: 296 TAS 298 >UniRef50_A6DH51 D-alanylalanine synthetase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH51_9BACT Length = 1029 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 111/308 (36%), Positives = 169/308 (54%), Gaps = 14/308 (4%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 KIAVL GG S+ER +SL S AV LR+GG + +D + + + S VF Sbjct: 729 ALKIAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDITDFSLPAI-SKDIDLVFPV 787 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG +Q ++E G PY G + +S L +DK + + +GLPV V L + Sbjct: 788 LHGEFGEDGQVQKLIEGQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKD 847 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 E + LP +VKP+R+GSS+ +S V E L+ A+ LAF++D+ VL+E Sbjct: 848 EE---------ISQNITLPCVVKPNRQGSSISLSLVEKEGDLRKAIDLAFENDDTVLVES 898 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYL--SDETQYFCPA-GLEASQEANLQ 238 + G E TV ++ + L + I P F+DY+AKY +TQY CP + L+ Sbjct: 899 FFKGIECTVGLIDGKALSVVEIIPPEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLK 958 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 +++ L + R+D++ + D +F +LEANT PG TS SL+P AA++ G+SF++L Sbjct: 959 KCGEESFKVLKGRHLMRVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTEL 1018 Query: 298 VVRILELA 305 + + A Sbjct: 1019 CCGLAKKA 1026 >UniRef50_C1F9Q0 D-alanine--D-alanine ligase n=3 Tax=Bacteria RepID=C1F9Q0_ACIC5 Length = 400 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 102/265 (38%), Positives = 146/265 (55%), Gaps = 10/265 (3%) Query: 51 KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLP 110 +++ +F LHG GEDGT+QG+LEL G+ Y GSGV+ SA MDK K L+ A LP Sbjct: 122 QALQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKLP 181 Query: 111 VAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLA 170 + V R E+EK +AL PV VKP+ GSSVG+SK L+ A+ LA Sbjct: 182 ITKHVTFLRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIELA 241 Query: 171 FQHDEEVLIEKWLSG-----PEFTVAILGE---EILPSIRIQPSGTFYDYEAKYLSDETQ 222 D ++++E+ + G E VA+LG E I P FYDYEAKYLS+ + Sbjct: 242 AGFDRKIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEGSV 301 Query: 223 YFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS--DGQFYLLEANTSPGMTSH 280 PA L +Q ++ + + A+ C G R+D +++ G+ YL E NT PG TS Sbjct: 302 PIIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFTSI 361 Query: 281 SLVPMAARQAGMSFSQLVVRILELA 305 S+ P +G+ +S+L+ R++ELA Sbjct: 362 SMYPKLWEASGLPYSKLIDRLIELA 386 Score = 65.4 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE 44 M +I +L GG S E EVSL S A++L + + P+ + Sbjct: 1 MKKLRIGILFGGRSGEHEVSLLSAASILKAIDRKKYEVVPIGITK 45 >UniRef50_B0T824 D-alanine--D-alanine ligase n=131 Tax=Proteobacteria RepID=DDL_CAUSK Length = 322 Score = 323 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 127/312 (40%), Positives = 164/312 (52%), Gaps = 22/312 (7%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 IAVLLGG SAEREVSL +GAA A L G VDP + L ++ VF LH Sbjct: 13 HIAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVDPGKDVAQVLTALAPDLVFNGLH 72 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 GR GEDG +QG+LE +GL YT SGV+ASAL+MDK +SK + AG+PV R + Sbjct: 73 GRWGEDGCVQGVLETLGLAYTHSGVLASALAMDKAKSKAVLAAAGIPVPGGGLFDRHDVA 132 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA-----ENALQDALRLAFQHDEEVL 178 +G + P +VKP+ EGSSVG+S V L + E+V+ Sbjct: 133 QG---------HVMPPPYVVKPNAEGSSVGVSLVFEGANGPPRQLAA---PDWAFGEQVM 180 Query: 179 IEKWLSGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 +E ++ G E VA++GE L I+ S FYDY+AKY + + PA + + Sbjct: 181 VEPYIPGLELAVAVVGESNGPRALAVTEIRSSTGFYDYDAKYSQGGSIHVLPAPIPDAVR 240 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMS 293 L T LGC+G R D D + LLE NT PGMT SLVP A AG+S Sbjct: 241 DRALHLAKLGHTALGCQGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAGVS 300 Query: 294 FSQLVVRILELA 305 F +LV I+E A Sbjct: 301 FDRLVFWIVEDA 312 >UniRef50_B0NI26 Putative uncharacterized protein n=9 Tax=root RepID=B0NI26_EUBSP Length = 356 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 115/357 (32%), Positives = 169/357 (47%), Gaps = 62/357 (17%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY--------PVDPKE---------- 44 KI VL GG S ER+VSL SGA + LRE G AY P DP + Sbjct: 1 MKIIVLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGG 60 Query: 45 ------------VDVTQLKSMGFQ------------------KVFIALHGRGGEDGTLQG 74 D+ L++ F+ LHG GE+G LQ Sbjct: 61 GLEIAEGIKTTTPDLEALRASRPDQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQA 120 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 +++G+ YTG ALSMDKL +K +++ +G+P +L R + L Sbjct: 121 TFDILGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNRNTKDTPL-------- 172 Query: 135 SALGL--PVIVKPSREGSSVGMSKVVAENALQDALRLAF--QHDEEVLIEKWLSGPEFTV 190 LG P+++KP GSS+G+ V E ++A+R +F H++EV+IE ++ G E+ Sbjct: 173 EKLGYYLPLVIKPCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYAC 232 Query: 191 AILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPA-GLEASQEANLQALVLKAWTTLG 249 +I+ + LP I I P ++YE KY Q CP L+ +A +Q KA+ L Sbjct: 233 SIIAGKALPLIEIIPKDGIFNYENKYQDGGAQELCPPVSLDDKTQAKIQRAGEKAFRVLH 292 Query: 250 CKGWGRIDVMLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + R D ++D DG+FY LE N PGMT SL+P +AR G+ + L I+E + Sbjct: 293 MDVYARADFIVDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIEES 349 >UniRef50_D1N436 D-alanine/D-alanine ligase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N436_9BACT Length = 702 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 121/307 (39%), Positives = 169/307 (55%), Gaps = 13/307 (4%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 KI +LLGG S ERE+SL SG+AV LR GG D D E + + V+ Sbjct: 314 APKINLLLGGASNEREISLKSGSAVAQALRNGGFDVTVTDVTECRLLP-EMREADVVYPV 372 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG +Q ++E GL + GSG AS L+MDK+ +K L G+P A W +TR Sbjct: 373 LHGGFGEDGRIQKVMEEAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTRDR 432 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 E L LP+I+K EGS+ G+ KV AL F E+L+E+ Sbjct: 433 RE---------LPQNLKLPLILKVPMEGSTFGIVKVERAEEWDAALEKEFAMAGELLVEE 483 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYL--SDETQYFCPAG-LEASQEANLQ 238 ++ G E TV I+ E+LP+I I+ FYDY+AKY+ T+YFCPA L A Q A+ Sbjct: 484 YIDGIEITVPIVNGEVLPAIEIKSPHGFYDYDAKYVYKDGHTEYFCPARSLSAEQVADAS 543 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 +K + GC+ R+D ++ DG Y+LE N+ PG T+ SLVP AA+ +G+SF ++ Sbjct: 544 RQAVKFYLGAGCRDILRVDFIVGKDGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMT 603 Query: 299 VRILELA 305 ++ A Sbjct: 604 ATLVYAA 610 >UniRef50_C7PEF5 D-alanine/D-alanine ligase n=6 Tax=Sphingobacteriales RepID=C7PEF5_CHIPD Length = 329 Score = 323 bits (828), Expect = 6e-87, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 152/329 (46%), Gaps = 31/329 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT------QLKSMG 54 M IA++ GG S E +S+ S A + L + Y + QL ++ Sbjct: 1 MKKNIALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDGWNYTGSDGQLIAVD 60 Query: 55 --------------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 F VFI +HG GEDG LQG E++G+P+T G++ SAL+ +K Sbjct: 61 RNDFTLTINGNKVIFDAVFIGIHGTPGEDGRLQGYFEMLGIPFTSCGMVTSALTFNKSYC 120 Query: 101 KLLWQGAGL-PVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA 159 + G+ V+ V + + + A + L LPV VKP+ GSS+GMSKV Sbjct: 121 NKVVASLGVVNVSKSVHIFKDQPFD-----IQAILQELKLPVFVKPAEGGSSIGMSKVNT 175 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAK 215 L A+ AF D ++LIE+++ G E T + +LP I S F+DYEAK Sbjct: 176 AEELAPAIEKAFNEDVQILIEEFVKGREITCGLYRSNGAFTVLPVTEIISSKEFFDYEAK 235 Query: 216 YLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQFYLLEANTS 274 Y ++ PA +Q K + L C+G R+D + + + + LE NT Sbjct: 236 YTPGVSREVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVRMDFIWEEASNRLFFLEVNTM 295 Query: 275 PGMTSHSLVPMAARQAGMSFSQLVVRILE 303 PG + +S+VP R AG + + ++E Sbjct: 296 PGQSENSIVPQQVRAAGKTLQEFYGTLIE 324 >UniRef50_Q1G7Q5 D-alanine--D-alanine ligase n=12 Tax=Lactobacillus RepID=DDL_LACDA Length = 362 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 110/349 (31%), Positives = 177/349 (50%), Gaps = 44/349 (12%) Query: 1 MTDK--IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP------------------- 39 MT K + ++ GG S+E EVS+ S + + + D +P Sbjct: 1 MTKKTQVGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVL 60 Query: 40 --------VDPKEVDVTQLKSM----GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 + K +++ L + +F +HG GEDG LQG+ L+ P+ G Sbjct: 61 EEPGYMVEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVD 120 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP---VIVK 144 V+A+A++MDK +K+L Q AG+PVA WV++ R E+E + K + + L + VK Sbjct: 121 VLAAAVTMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVK 180 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIR-- 202 PS +GSSVG++ V ++ +AL AF++D++VL+E+ + G E A+LG + P + Sbjct: 181 PSNQGSSVGITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDH-PVVSGV 239 Query: 203 ---IQPSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I T+Y YE KY ++ T PA + A +Q LK + C G R+D Sbjct: 240 GQIINADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDS 299 Query: 259 ML-DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 ML +SDG+ E N PG T+ S+ P +AG+S+ L+ R++ LA+ Sbjct: 300 MLRESDGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLAE 348 >UniRef50_B3QMS4 D-alanine--D-alanine ligase n=11 Tax=Chlorobiaceae RepID=DDL_CHLP8 Length = 364 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 153/347 (44%), Gaps = 48/347 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK------------------ 43 +A+ GG S E +S+ S AV + + D P+ Sbjct: 3 KQTVALFFGGKSVEHIISIISARAVASHIDHSRYDITPLYIDRGGHWHGGACAKRILALD 62 Query: 44 ----------EVDVTQLKSM----------------GFQKVFIALHGRGGEDGTLQGMLE 77 + +L + F+ LHG GEDG +QG L+ Sbjct: 63 VAVLLRNGGQDEVFERLDEITSFDEGKRFDLTAFFDSIDVAFLTLHGSYGEDGKIQGCLD 122 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 +PY G G+ +SALSMDK +KL AG+ VA ++++T A++ A Sbjct: 123 TFDIPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFMSVTSADYAADPQAICNAVTERF 182 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE- 196 PV VKP+ GSSVG+SKV L+ AL A D +VL+E+ ++G E VA+LG + Sbjct: 183 AFPVFVKPANLGSSVGISKVHNAAELRPALDKACALDAKVLVEETITGREVEVAVLGNDD 242 Query: 197 --ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 I P FYD+E KY+ + + PA L A ++ L + LGC G Sbjct: 243 PIASVPGEIIPGSDFYDFEDKYVKSDAKLVIPADLPGEVSAAVRNAALTVFKALGCSGMA 302 Query: 255 RIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 R+D ++ + L E NT PG T S+ PM +G+ F +L+ R Sbjct: 303 RVDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSASGVEFDELISR 349 >UniRef50_A8MKQ7 D-alanine--D-alanine ligase n=7 Tax=Clostridiaceae RepID=A8MKQ7_ALKOO Length = 349 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 95/344 (27%), Positives = 157/344 (45%), Gaps = 48/344 (13%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------DVTQLKSM--- 53 +AV+ GG S+E EVSL S +AV+ L D + + ++K Sbjct: 6 VAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGTLDKIKENTWF 65 Query: 54 ------------------------------GFQKVFIALHGRGGEDGTLQGMLELMGLPY 83 VF LHGR GEDGTLQG+ E+ G+PY Sbjct: 66 LDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGLFEITGIPY 125 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 G V AS++ +DK + + Q AG V +A+ + D+ +G P+ V Sbjct: 126 VGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAID----NRTKEDEINKFAENVGYPIYV 181 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPS 200 KPSREGSS+G++K + L + A + D +V++E+ + G E AILG + + Sbjct: 182 KPSREGSSIGITKAENHSDLMGGIEAALKLDGKVVLEENIEGFEVGCAILGNDDLIVGTV 241 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I+ F+D+ KY ++ PA ++ ++ + + LGC G R+D+ + Sbjct: 242 DEIEVPNGFFDFTEKYTLQNSKIHLPARIDQDLSERIKEIGKGIYKALGCSGLSRVDLFV 301 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 D + + E NT PG T+ S P AG+++ ++ ++++L Sbjct: 302 DKNHRIVFNEVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLIDL 345 >UniRef50_A3ERR6 D-alanine--D-alanine ligase n=2 Tax=Leptospirillum sp. Group II RepID=A3ERR6_9BACT Length = 303 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 116/299 (38%), Positives = 159/299 (53%), Gaps = 9/299 (3%) Query: 9 LGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGE 68 +GG S E VS SG AVL LR G +A PV+ L F+A HG GE Sbjct: 1 MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60 Query: 69 DGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD 128 +G LQG LE++G+PYTGSGV+ SAL M K S+ L++ GL V VA+ E Sbjct: 61 NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIESGE------- 113 Query: 129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEF 188 + + LP +VKP GSS+G+++V L AL A +H +L+E +L G E Sbjct: 114 RLTPDKIPFPLPFMVKPESAGSSIGVTRVDHFPDLPQALLEAEKHSSRILVEPFLPGREV 173 Query: 189 TVAILGEEILPSIRIQPS--GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWT 246 AIL L +I I P FY Y +KY ++++ PA L + + L+ L+A+ Sbjct: 174 QSAILDGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVASRLEEATLRAFG 233 Query: 247 TLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 L +G R+D ++ DG+ +LE NT PG+T SLVP AR G+SF LV IL A Sbjct: 234 LLELRGVARMDTLVLPDGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSA 292 >UniRef50_Q4JUX6 D-alanine--D-alanine ligase n=14 Tax=Corynebacterium RepID=DDL_CORJK Length = 373 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 111/366 (30%), Positives = 157/366 (42%), Gaps = 72/366 (19%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------DVTQLKSMG-- 54 +AVL GG S E VS S AV+ L + PV E D ++L++ G Sbjct: 13 VAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWVPGTTDTSRLRADGRD 72 Query: 55 ----------------------------------------------FQKVFIALHGRGGE 68 VF LHG GE Sbjct: 73 MPRVEDGGVHVQLTFGGAGTAGSAGSGAAGEMRYVTGPQAGEVFAQVDVVFPVLHGVNGE 132 Query: 69 DGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD 128 DGT+QG+L+L G+ Y G+GV+ASA MDK +K L + AG+PV + L + + Sbjct: 133 DGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGEELILFQPR------E 186 Query: 129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEF 188 E LGLPV VKP+R GSS+G+SKV + A+ LAF +D +V++E + G E Sbjct: 187 LTAEEKERLGLPVFVKPARGGSSIGISKVDSWEEFDAAIDLAFSNDNKVIVEAMIHGAEV 246 Query: 189 TVAILGEEILPSIRIQP---------SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 +L + P + FY ++AKY+ PA L A ++ Sbjct: 247 ECGVLQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAPLPAETIKEIRQ 306 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 L ++ + LGC G R+D +G L E NT PG T S+ P G+SF LV Sbjct: 307 LAIRTFNALGCDGIARVDFFATENG-PVLNEINTMPGFTPISMYPKMFAAEGVSFGDLVS 365 Query: 300 RILELA 305 ++ A Sbjct: 366 ALIARA 371 >UniRef50_C3WFS8 D-alanine-D-alanine ligase n=6 Tax=Fusobacterium RepID=C3WFS8_FUSMR Length = 288 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 119/303 (39%), Positives = 164/303 (54%), Gaps = 19/303 (6%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-VDVTQLKSMGFQKVFIA 61 KIAV +GG S+EREVSL SGAA+L L+ G DAY VD E V+ + +IA Sbjct: 1 MKIAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTEKNLVSAFTENEYDLAYIA 60 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 HG GE+GT QG+L+++G PYTGSG M SA++MDK +K + G+ A Sbjct: 61 FHGGYGENGTFQGLLDMLGKPYTGSGAMESAITMDKAYTKAVANSVGIKTAKTY------ 114 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + EI PV+VKPSR+GSSVG+ + +++ALR + LIE+ Sbjct: 115 -------NCVEEIKD--FPVVVKPSRDGSSVGIYFCNTQEEVREALRAL--EGRKPLIEE 163 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241 + G E TV +L E L +RI P FYDYE+KY + + + PA ++ + Sbjct: 164 MIQGEELTVGVLNGEGLGVLRIIPKNKFYDYESKYAAGGSIHEYPAKIDKAAYDKAMENA 223 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 +K +G KG R D ML DG+ Y LE NT PGMT SL+P G +F LV + Sbjct: 224 VKIHNVIGLKGISRSDFML-KDGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLVKIM 282 Query: 302 LEL 304 ++ Sbjct: 283 VDT 285 >UniRef50_A7VWG2 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWG2_9CLOT Length = 342 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 105/332 (31%), Positives = 154/332 (46%), Gaps = 47/332 (14%) Query: 21 NSGAAVLAGLREGGIDAYPVDPKEVDVTQL------------------------------ 50 S VL + + + PV K+ L Sbjct: 1 MSATTVLRAIDKSRYEVTPVGIKKDGSWWLYPGDIGLILDGRWESCPDNLPAFLVPDASV 60 Query: 51 ------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKL 98 V ALHG+ GEDGT+QG+L+L G+P+ G + +SA MDK+ Sbjct: 61 GGLLIRDSDHSDTVKKIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDKV 120 Query: 99 RSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG-LPVIVKPSREGSSVGMSKV 157 + ++ + AG+P A + L EF+ + L LG PV VKP+ GSSVG+SK Sbjct: 121 ITNVMLEQAGIPQARFTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVGVSKA 180 Query: 158 VAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYE 213 L+ A+ A + D ++LIE+ + G E A+LG E I PS FYDYE Sbjct: 181 ENREELRAAIAKAAKEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEIAPSNEFYDYE 240 Query: 214 AKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANT 273 AKYLS + + PA LE+ +++ KA+ LGC G R+D + + + L E NT Sbjct: 241 AKYLSGTSGLYIPAHLESGVIETIRSTAQKAYQVLGCSGLARVDFFVRNGSEVLLNELNT 300 Query: 274 SPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 PG TS S+ P G+S +L+ R+++LA Sbjct: 301 LPGFTSISMYPKLMEHEGLSNQELIHRLIQLA 332 >UniRef50_A6FYV0 D-alanine--D-alanine ligase A n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FYV0_9DELT Length = 360 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 112/342 (32%), Positives = 173/342 (50%), Gaps = 40/342 (11%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------DPKE 44 ++A++ GG S+E +VS+ S VLA + + V P E Sbjct: 4 QRLALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPGPTE 63 Query: 45 VDVTQLKSMG---FQKV---------FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 + + G F LHG GEDGT+QG+ E+ +PY GSGV+AS+ Sbjct: 64 APLRAVLESGEPIADLGAFLRSCACTFPLLHGPYGEDGTIQGLFEVFDVPYVGSGVLASS 123 Query: 93 LSMDKLRSKLLWQGA--GLPVAPWVALTRA-EFEKGLSDKQLAEISALGLPVIVKPSREG 149 L MDK+ K A +PV P +++ E + + ++ A A G P+ VKP+ +G Sbjct: 124 LCMDKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAAAEAHGFPLFVKPANQG 183 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-----ILPSIRIQ 204 SSVG+S+ +L AL LA ++D +V+IEK L E +A+ G+ + P I Sbjct: 184 SSVGVSRADDLASLDAALDLALRYDAQVVIEKGLDAREIELAVFGDGGPDTVVSPPGEII 243 Query: 205 -PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD 263 P G +Y YE KY+ D Y P L A+ A LQ L L+A+ C G R+D +++ D Sbjct: 244 LPKGEWYTYETKYVDDVASYAIPVELPAATTARLQELALRAFRATRCSGLARVDFLVERD 303 Query: 264 G-QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + +L E NT PG TS S+ P AG+S+++L+ ++++L Sbjct: 304 SLEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVDL 345 >UniRef50_C0QV33 D-alanine--D-alanine ligase n=2 Tax=Brachyspira RepID=C0QV33_BRAHW Length = 328 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 161/311 (51%), Gaps = 13/311 (4%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGL---REGGIDAYPVDPKE--VDVTQLKSMGFQ 56 KIAVL GG S+EREVSL SG V L E + +D K+ V +LK + Sbjct: 17 NKKIAVLHGGLSSEREVSLRSGQNVYKALTSFDEIKDNCILIDVKDSYELVKKLKENNIE 76 Query: 57 KVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVA 116 + LHG GEDGT+QG+LE + + YTG ++ SA+ M+K+ +K +W+ + + A ++ Sbjct: 77 YCYNILHGTSGEDGTVQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFML 136 Query: 117 LTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 L + ++ P+I+KP +GSSVG+ + + + + + E Sbjct: 137 LK--DVKEINDSGIKGSALTFNFPLILKPISDGSSVGVHLIKTKTEFESVVSSI-KDSEN 193 Query: 177 VLIEKWLSGPEFTVAIL--GEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEA 231 +E ++ G E TV ++ +E + P + I YDYEAKY +T+ PA L Sbjct: 194 YFLEPYIKGKEITVGLVKQDDENIYVFPILGINSKNEIYDYEAKYTPGKTEMEMPAKLSK 253 Query: 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 E + KA+ LGC G RID ++ +D + YL+E NT GMT+ S +P A+ Sbjct: 254 EIENKVIETCKKAYKVLGCSGLSRIDAIVGNDNEVYLMEVNTQGGMTNTSDIPAMAKHIN 313 Query: 292 MSFSQLVVRIL 302 + F+ LV+ IL Sbjct: 314 LDFNDLVLYIL 324 >UniRef50_C0GMF6 D-alanine/D-alanine ligase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GMF6_9DELT Length = 300 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 109/305 (35%), Positives = 158/305 (51%), Gaps = 14/305 (4%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL-KSMGFQKVFIA 61 ++ ++ GG S ER+VSLN A + L+ G + +D + K+ I Sbjct: 1 MRVLLIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVNKAREADAAIIN 60 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDG++QG+LE +GLPY GSGV S L+++K SK + GL Sbjct: 61 LHGAPGEDGSIQGVLEDVGLPYQGSGVRGSFLALNKALSKQFYANHGLRTPKGGLYFPQ- 119 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 + + PVI KP++ GSS+ M + + L E+L+E+ Sbjct: 120 ----------GRLHHVPPPVICKPNQGGSSLDMQIFYNQEEMYSFLNQVDSE-HEILVEE 168 Query: 182 WLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 ++G E + A+L E LP I IQP G F+DY +KY D CPA + ++Q + Sbjct: 169 LINGHEVSCAVLDNEPLPPILIQPVKGDFFDYNSKYDPDGAVEICPAPISQEASRSIQEM 228 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 L+A LG + + R D MLD Y+LE NT PGMT SLVP AA+QAG+ F++L+ R Sbjct: 229 SLQAHRILGLRHYSRSDFMLDQQDNIYILETNTLPGMTRTSLVPKAAQQAGIGFTELIAR 288 Query: 301 ILELA 305 +L LA Sbjct: 289 LLSLA 293 >UniRef50_D1PPX6 D-alanine--D-alanine ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPX6_9FIRM Length = 370 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 111/357 (31%), Positives = 165/357 (46%), Gaps = 53/357 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREG----GIDAYPV----------------- 40 ++A+ GG S+E EVS S +A L L E + +PV Sbjct: 6 KLRVALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPEA 65 Query: 41 -------------------DPKEVDVTQLKS-----MGFQKVFIALHGRGGEDGTLQGML 76 D + V L+ + +HG+ GEDGT+QG+ Sbjct: 66 MADGSWEQGADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTIQGLF 125 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 E+ +PY G GV+ASA+ MDK + + AG+P W + RAE E+ + +A Sbjct: 126 EMARIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDRAEAA 185 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE 196 LG P+ VKP+ GSSVG+SK AL AL +A + D++V++E+++ G E A +G Sbjct: 186 LGYPIFVKPANAGSSVGISKAADRAALDAALDVALREDDKVVLEEFIDGQEVECAAIGNP 245 Query: 197 ILP-------SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLG 249 P I FY Y+ KY + +Q PA L + ++A KA+ LG Sbjct: 246 DDPANITTTRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLSEEKLDEVKAEARKAYLALG 305 Query: 250 CKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C G R D ++ G+ E NT PG T+ S+ P G++F QLV R+L+LA Sbjct: 306 CAGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLVDRLLQLA 362 >UniRef50_B0MT57 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MT57_9BACT Length = 331 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 103/328 (31%), Positives = 158/328 (48%), Gaps = 30/328 (9%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL--------- 50 M IA++ GG S+ERE++L S A + + L D +D D Sbjct: 1 MKRLNIALMAGGDSSEREIALQSAAQIASALDPAKYDITLIDLHGRDWHYTSPDGRQWQV 60 Query: 51 -----------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 + F I +HG GE+G LQG L++MG+PY+ + +S ++ DK+ Sbjct: 61 DKNDFSITIDGEHKAFDYALILIHGTPGENGRLQGYLDMMGIPYSSCSMTSSVVTFDKIT 120 Query: 100 SKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA 159 +K G+P+A R + LGLPV VKP+ GSS G++KV + Sbjct: 121 TKRTVAEFGIPLARGFFFGRDSRIDPKE-----IVRTLGLPVFVKPNASGSSFGVTKVKS 175 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAK 215 E + A+ AF +E+LIE+ + G E +L E I P I F+DYEAK Sbjct: 176 EADILPAVAEAFTESDEILIEECIQGREMGCGMLIAKGREYIFPITEIVSKKEFFDYEAK 235 Query: 216 YLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSP 275 Y + + PA + +A L L A+ C+G R+D ++ +G+ YL+E N+ P Sbjct: 236 YTAGCSDEITPADIAPEIKAELNRLTALAYKACRCRGVVRVDFIVTPEGKPYLIEINSIP 295 Query: 276 GMTSHSLVPMAARQAGMSFSQLVVRILE 303 GM+ S+VP R+AGM+ +L I+E Sbjct: 296 GMSGGSIVPKQVREAGMTLGELYDLIIE 323 >UniRef50_Q5GS66 D-alanine--D-alanine ligase n=8 Tax=Wolbachia RepID=DDL_WOLTR Length = 339 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 106/323 (32%), Positives = 161/323 (49%), Gaps = 26/323 (8%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M I +L GG S ER++SL SG AV L +A +D +LK + FI Sbjct: 15 MVLTITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFI 74 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GEDG +QG+LE++G+ YT SGVMASA++M+K SK +++ G+ ++R Sbjct: 75 ALHGPYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRG 134 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA---LQDALRLAFQHDEEV 177 + K + P ++KP EGSS+G+ + L++ + HD + Sbjct: 135 DILKNNI--------KIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGI 186 Query: 178 -------------LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYF 224 +IE+++ G E A+L +E ++ I+P FYDY+AKY + ++ Sbjct: 187 EEEEPVWITRDLMIIEEYIPGIELHTAVLLDEAAGTMEIRPKNKFYDYKAKYTNGFAEHI 246 Query: 225 CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLV 283 PA + + LK LGCK R D + D +LE NT PG T SLV Sbjct: 247 FPAEIPDNIYEMTLEHALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLV 306 Query: 284 PMAARQA-GMSFSQLVVRILELA 305 P A+ G+ F++LV I+E + Sbjct: 307 PEIAKLTKGIDFNELVKIIIEDS 329 >UniRef50_C4FB14 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB14_9ACTN Length = 325 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 132/311 (42%), Positives = 174/311 (55%), Gaps = 14/311 (4%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-DAYPVDPKEV-DVTQLKSMGFQKVFI 60 K+AVL GG S ERE+SL SG A L E G VDP E +++L++ + FI Sbjct: 15 MKVAVLAGGISDEREISLASGKNAAAALTEAGYGTVEMVDPGERGFLSRLENGNYDVAFI 74 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 ALHG GGEDG Q +LE +G+PYTGS +AS ++MDK SKLL++ AGLPVAP V TRA Sbjct: 75 ALHGFGGEDGMTQHILEFLGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRA 134 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 + + +G VKP GSS G+S V + L A+ LAF+H ++V++E Sbjct: 135 DMPS-----IDEIVEIVGPQSFVKPVVNGSSYGISLVKDPSELTAAIELAFEHGDKVMVE 189 Query: 181 KWLSGPEFTVAILGE----EILPSIRIQ--PSGTFYDYEAKYLSDETQYFCPAGLEASQE 234 + G E +VA LG+ LP + I FYD E KY + PA L Sbjct: 190 HRVFGVECSVAALGDGETLRALPVVEIMMPQQSEFYDLEVKYADPNDIHRIPAQLPEDVY 249 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 A +Q + +A LG G R DV++ DG +LE N PGMTS SLVP AR AG++F Sbjct: 250 AQVQDIACRAHEALGLFGISRTDVIVTEDG-PIILETNNIPGMTSESLVPDEARHAGIAF 308 Query: 295 SQLVVRILELA 305 S L ++ELA Sbjct: 309 SDLCAELVELA 319 >UniRef50_A4ECT1 Putative uncharacterized protein n=2 Tax=Collinsella RepID=A4ECT1_9ACTN Length = 321 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 120/310 (38%), Positives = 162/310 (52%), Gaps = 14/310 (4%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-DAYPVDPKEVDVT-QLKSMGFQKVF 59 +AVL GG SAERE+SLNSG V+ L+E G +D D + + GF F Sbjct: 8 NMHVAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVELIDTAADDFMVTMATGGFDVAF 67 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IA+HG GGEDG +QG +E +G+PYT SGV+ASA DK SKLL+ AG+P+AP +AL Sbjct: 68 IAMHGAGGEDGAMQGAMETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLALEV 127 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 + + G VKP+ GSS G+S V + L A+ AF + ++VL+ Sbjct: 128 GDEVD-----IDHIVEVCGERCFVKPAVNGSSYGISLVHEPSELPAAIAKAFAYGDKVLV 182 Query: 180 EKWLSGPEFTVAILGE---EILPSIRIQPSG--TFYDYEAKYLSDETQYFCPAGLEASQE 234 EK + G E TV + GE LP + I+ FYD + KY+ + PA + Sbjct: 183 EKCIEGTEITVGVYGEDDVRALPIVEIRKPEDCEFYDLDVKYVDPTDIHRIPAQISPENY 242 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQA-GMS 293 A Q L A LGC G R D ++ DG +LE NT PGMT SL P R M+ Sbjct: 243 ARAQELACAAHKALGCLGISRSDFIVSEDG-PVILETNTIPGMTDTSLYPDEIRHTDDMT 301 Query: 294 FSQLVVRILE 303 F Q+ ++ Sbjct: 302 FPQVCDSLIR 311 >UniRef50_P25051 Vancomycin/teicoplanin A-type resistance protein vanA n=122 Tax=Bacteria RepID=VANA_ENTFC Length = 343 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 154/354 (43%), Gaps = 63/354 (17%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG----- 54 M K+A+L GG S E +VS+ S + A + + + + + V ++ Sbjct: 1 MNRIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWE 60 Query: 55 ------------------------------FQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 F ALHG+ GEDG++QG+ EL G+P+ Sbjct: 61 NDNCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFV 120 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 G + +SA+ MDK + ++ + AG+ + + + + + PV VK Sbjct: 121 GCDIQSSAICMDKSLTYIVAKNAGIATPAFWVINKDD---------RPVAATFTYPVFVK 171 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQ 204 P+R GSS G+ KV + + L A+ A Q+D ++LIE+ +SG E A+LG + Sbjct: 172 PARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVSGCEVGCAVLGNSAALVV--- 228 Query: 205 PSGTFYDYEAKYLS-------------DETQYFCPAGLEASQEANLQALVLKAWTTLGCK 251 G +Y + PA L A + +Q K + LGC+ Sbjct: 229 --GEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCR 286 Query: 252 GWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 G R+D+ L +G+ L E NT PG TS+S P AG++ +L+ R++ LA Sbjct: 287 GLARVDMFLQDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 340 >UniRef50_Q04RK6 D-alanine--D-alanine ligase n=4 Tax=Leptospira RepID=DDL_LEPBJ Length = 351 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 172/344 (50%), Gaps = 45/344 (13%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP------------------------ 39 KIAV GG+S E +S+ +G + L G P Sbjct: 3 KIAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVPLQYRISIPYEAV 62 Query: 40 --VDPKEVDVTQ---------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 D E + + + ++ VF+ LHG GEDG++QG L ++G+PYTGSGV Sbjct: 63 NSSDLFEEEFQKTNGVSKMDFISNLDADIVFLGLHGGKGEDGSIQGFLRVLGVPYTGSGV 122 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSRE 148 ASAL+MDK R+ ++ +G VAP+ + + + + + + +LG P +KP Sbjct: 123 AASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNSPEETVIK-LMSLGFPQFLKPVEG 181 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE--------ILPS 200 GSSV K+ + L L L F+ D +V+ + +L+G E + +L LP+ Sbjct: 182 GSSVSTYKITNQEQLSRQLALIFESDSKVMSQSFLAGTEVSCGVLERYRNGKLERIALPA 241 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I P G F+D+E+KY ++ PA + + +Q L + A T+LGC+G+ R D ++ Sbjct: 242 TEIVPGGEFFDFESKYKQGGSREITPARISKQEMTRVQELAIDAHTSLGCRGYSRSDFII 301 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 G+ ++LE NT PGMT SL+P A+ AG++ ++ ++E+ Sbjct: 302 VG-GEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIEI 344 >UniRef50_B2KDP6 D-alanine/D-alanine ligase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDP6_ELUMP Length = 353 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 105/340 (30%), Positives = 159/340 (46%), Gaps = 40/340 (11%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS--------- 52 IAV+ GG S E EVS++S A V G+ + + + + + Sbjct: 3 KLTIAVVYGGKSVEHEVSVHSAADVC-GILSKKYNVINIFISKEGLWFAQEKCGPAQPSD 61 Query: 53 --------------------MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 + +F LHG GEDG +QG+ ELM PY G GVMASA Sbjct: 62 INVTPVFSNDCMFQTADGGTISADVLFPVLHGTKGEDGCIQGLFELMETPYVGCGVMASA 121 Query: 93 LSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSV 152 + MDK SK+L AG+P P++ + + ++ A+ + LG PV VKP GSS+ Sbjct: 122 IGMDKEVSKVLAAYAGVPTLPYITFKKGD---SVTKDFKAKTAKLGYPVFVKPVNLGSSI 178 Query: 153 GMSKVVAENALQDALRLAFQHDEEVLIEKWLS-GPEFTVAILGE----EILPSIRIQP-S 206 G++KV E L+ A+ A + D ++LIEK + E A+ GE E + P Sbjct: 179 GITKVKEEAFLEKAIEFALKFDNDILIEKGVQSPKEIFCAVCGEGNNTESSSCGELIPNG 238 Query: 207 GTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQ 265 F+DY +KY+ + PA + ++ +Q + G+ R+D +L DGQ Sbjct: 239 HEFFDYHSKYIDPNGCTVKVPASVSEEEDKLMQKYSRMIFKVFKACGFARVDFLLGKDGQ 298 Query: 266 FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 Y E NT PGM++ SL P R AG + ++ ++ LA Sbjct: 299 IYFSEINTLPGMSNASLFPQLWRAAGKKYEDVLDTLINLA 338 >UniRef50_Q046V3 D-alanine--D-alanine ligase n=16 Tax=Lactobacillus RepID=DDL_LACGA Length = 361 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 165/343 (48%), Gaps = 39/343 (11%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------DPKE------- 44 K+ ++ GG S+E EVS+ S + + D YP+ D Sbjct: 4 KIKVGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNP 63 Query: 45 -------------VDVTQLKSMG-FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMA 90 ++ +LK F +HG GEDG LQG+ ++ P+ G V+A Sbjct: 64 KMEVANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLA 123 Query: 91 SALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE--ISALGLPVIVKPSRE 148 +A++MDK +K+L Q AG+PVA W+A+ R E+ ++K E S LG + VKPS + Sbjct: 124 AAVTMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQ 183 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQ 204 GSSVG+S V E + AL AF++D++VL+E+ + G E A+LG + I Sbjct: 184 GSSVGVSHVTNEKEYKVALAEAFKYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIIN 243 Query: 205 PSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML-DS 262 +FY YE KY + T PA L ++ LK + C G RID ML Sbjct: 244 AKDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTE 303 Query: 263 DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D + L E N PG T+ S+ P + G+ ++ L+ ++++ A Sbjct: 304 DKEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 346 >UniRef50_Q2LS09 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS09_SYNAS Length = 355 Score = 313 bits (802), Expect = 6e-84, Method: Composition-based stats. Identities = 110/337 (32%), Positives = 166/337 (49%), Gaps = 33/337 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP---------------------- 39 ++ +++ G S+E+EVSL SG + + + P Sbjct: 8 KLRVGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCT 67 Query: 40 VDPKEVDVTQLK-------SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 D +E + VF+ALHG+ GEDG +QG+LEL+ +PYTGSGV+ASA Sbjct: 68 RDVEEDLAEEAVRVPYEELKTRVDLVFLALHGKYGEDGCMQGLLELLKIPYTGSGVLASA 127 Query: 93 LSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLA-EISALGLPVIVKPSREGSS 151 L MDKL S+ + + G+ V V + R ++ + +G P +VKPSREG S Sbjct: 128 LGMDKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQEIGFPCVVKPSREGCS 187 Query: 152 VGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGT 208 G+ KV++ L DAL AF D L+E+++ G E T ILG L + Sbjct: 188 TGVKKVMSRAGLSDALNGAFLWDCTALVEEFIDGMEVTCGILGGNPPTALTPSETIATSD 247 Query: 209 FYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYL 268 E K+L + + PA L +Q + +KA+ L KG+ RID+ + S G+ + Sbjct: 248 VLSLEDKFLYGQGENKTPARLPGETLMKIQEVAVKAFEALDLKGYARIDMFVTSAGRVLV 307 Query: 269 LEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 LE NT PGMT +++ A +G++ + LV RILE A Sbjct: 308 LEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAA 344 >UniRef50_A1ZZ06 D-alanine--D-alanine ligase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZZ06_9SPHI Length = 394 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 147/364 (40%), Gaps = 63/364 (17%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------------- 45 M I V GG S E E+S+ S + + D P+ + Sbjct: 1 MKANIGVFFGGRSVEHEISVISALQAIQAIDHSRYDVTPIYISKAGQWYTGEQLLDVENY 60 Query: 46 -------------------------------DVTQLKSMGFQKVFIALHGRGGEDGTLQG 74 + F LHG GEDG LQG Sbjct: 61 RKLDELLNNSTKIIMSPNFEDYSFVESGAKGLFKKPLKGKIDIAFPVLHGSFGEDGALQG 120 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 + ELMG+PY G V++SA+ MDK+ K++ + +GLPV +V +++ + Sbjct: 121 LFELMGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVKYVWFYSKNWQQDTTSHIGKVE 180 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAIL 193 LG PVIVKP+ GSSVG+ K L++A+ A ++L+E+ + E ++L Sbjct: 181 QTLGYPVIVKPANLGSSVGIKKAANREELEEAIDYAAGFSHKLLVEQTIVDLKEINCSVL 240 Query: 194 GE----EILPSIRIQPSGTFYDYEAKYLS-------DETQYFCPAGLEASQEANLQALVL 242 G + SG Y+ KY++ T+ PA + +Q L + Sbjct: 241 GNYENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMSGTKRKLPAEIPTEMSDKIQQLAV 300 Query: 243 KAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 + LGC G RID +LD + + Y+ E NT PG SL +F QLV + Sbjct: 301 DTFQVLGCAGVSRIDFLLDQATNEVYVNEINTIPG----SLSFYLWEATDKNFGQLVNDL 356 Query: 302 LELA 305 ++ A Sbjct: 357 IDTA 360 >UniRef50_B7C8W6 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8W6_9FIRM Length = 358 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 156/345 (45%), Gaps = 45/345 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------DVTQLKSM 53 ++ V+ GG S+E VSL+S + L + + + + DV ++ Sbjct: 10 KLRLGVVFGGQSSEYSVSLHSVTSFLRQIHADNYEMTLIGINKNGHFYLYNGDVDSIEHD 69 Query: 54 ----------------------------GFQKVFIALHGRGGEDGTLQGMLELMGLPYTG 85 VF LHG+ GEDG +QG+LELM + Y G Sbjct: 70 TWENEETCVSCAWVNGGIMPLDGSNKVIELDCVFPVLHGKNGEDGLIQGLLELMNIHYVG 129 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKP 145 VM+SA+SMDK +L + A +P A ++ L + LP I+KP Sbjct: 130 CDVMSSAMSMDKEIMHILCKEAKIPCADYICLYANRENPTFEQ----IQEKIELPWIIKP 185 Query: 146 SREGSSVGMSKVVAENALQDALRLAFQHDE--EVLIEKWLSGPEFTVAILGEE---ILPS 200 GSS G+ V + + A + AF +D ++L+EK + G E A++G E Sbjct: 186 CNAGSSYGVHFVNNKEEFESACKDAFFYDGRGKILVEKVIKGFEIGCAVMGNEEIFTGSI 245 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 I+ +G F+D+E KY +CPA ++ Q L K + + C G R+D+ + Sbjct: 246 DEIEITGGFFDFEGKYEMKGAAIYCPARIDEKTFKEAQELARKTYIAMNCCGMARVDMFV 305 Query: 261 DSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D + L E NT PG+T+ S P + AG+ F+ L+ +++ELA Sbjct: 306 TEDKEVILNELNTIPGLTATSRYPSMMKVAGIEFADLIDKLIELA 350 >UniRef50_Q2LS02 D-alanine--D-alanine ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LS02_SYNAS Length = 352 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 109/338 (32%), Positives = 164/338 (48%), Gaps = 34/338 (10%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV------------------DPK 43 K+ ++LGG S+EREVSLNSG V L + PV + Sbjct: 4 RLKVGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQNTT 63 Query: 44 EVDVTQLK-----------SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASA 92 +LK FI+LHG+ G+DG +QG+LEL+ +PYTG GVMASA Sbjct: 64 RDITERLKGEARRIAYEDLKKEIDFAFISLHGKYGDDGCIQGLLELLRIPYTGPGVMASA 123 Query: 93 LSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSV 152 L MDK + + + AG+ V + + E+ + + G P KP REGSSV Sbjct: 124 LGMDKHLQQKILRAAGVAVPESLLVREEEWRQDSQIVKDRVKEFPGYPCFTKPIREGSSV 183 Query: 153 GMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGT 208 G++ V E L+ + A + D VL+E++L G EF+ +L EE L I P Sbjct: 184 GVTVVRDEADLERGMEDALKWDRAVLVEEYLEGREFSCIVLEEEGQFHPLELTEIHPQSE 243 Query: 209 FYDYEAKYLSDETQYFCPAG-LEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFY 267 F+ Y+ KY+ + F P + ++A V++A+ LG + +GRID + +DG+ Sbjct: 244 FFTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFILNDGRIL 303 Query: 268 LLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + + N+S GM S A AGM S ++ ++E A Sbjct: 304 ITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENA 341 >UniRef50_B2RZR0 D-alanine--D-alanine ligase n=22 Tax=Borrelia RepID=DDL_BORHD Length = 365 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 157/346 (45%), Gaps = 41/346 (11%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLRE-GGIDAYPVDPKEV-------------- 45 M + ++ GG S E E+SL S + + L + + YP ++ Sbjct: 2 MKKNLMLIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDSVPDAP 61 Query: 46 ------------------DVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 + + VF +HGR GEDG +QG L++M +P G+G Sbjct: 62 ELIKRDSSAIISLIPGCGIFVNDEDLEIDVVFPIVHGRTGEDGAIQGFLKMMDIPCVGAG 121 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 ++ SA+S++K KLL + +P+ P++ + ++ + +L PVIVKP+ Sbjct: 122 ILGSAISINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKQSLNYPVIVKPAM 181 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQ 204 GSS+G+S + ++ + AF++D V++EK++ E +++G E I I Sbjct: 182 LGSSIGISIAYNDTQIEKCIEEAFEYDLTVVVEKFMKVREIECSVIGNEQIKIFTPGEIV 241 Query: 205 PSG-TFYDYEAKYLS---DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML 260 FYDY+AKY + + + PA L+ +++ + L +G RID ++ Sbjct: 242 VQDFVFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKCLELRGMARIDFLI 301 Query: 261 DSDGQ-FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + D Y+ E NT PG T S+ G+ + LV ++ LA Sbjct: 302 EKDTNLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLVDNLVSLA 347 >UniRef50_C7NBV7 D-alanine/D-alanine ligase n=2 Tax=Fusobacteriaceae RepID=C7NBV7_LEPBD Length = 308 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 170/307 (55%), Gaps = 9/307 (2%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA--YPVDPKEVDVTQLKSMGFQKVF 59 ++ V+ GG S EREVSL +G+ ++A L + +D ++ ++K + V+ Sbjct: 3 KLRVGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEKEVFEKVKELNLDFVY 62 Query: 60 IALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR 119 IALHG GEDG +Q +L+ +G+ Y+G GVM+SA+ MDK SK + G G+ +A W ++ Sbjct: 63 IALHGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRV 122 Query: 120 AEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 E LG V+VKP+ GSS+G+S V + L+ L L F D+E LI Sbjct: 123 GETVD-----FETIKKELGNRVVVKPNSGGSSIGVSFVENQEELEKGLELVFGMDKEALI 177 Query: 180 EKWLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQ 238 E+ L G E +V ++ ++ P+IRI+ +G ++DYE+KY + +A + Sbjct: 178 EEVLHGVEISVPVIDGKVFPTIRIEALAGDYFDYESKYAKGGANEYV-FEFPEEVQAEIN 236 Query: 239 ALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 ++ L C+G+ RID M+ ++ Y +E NTSPGMTS SL+P + G ++Q + Sbjct: 237 KFAKDSYYGLKCEGFARIDFMVVNEETPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTL 296 Query: 299 VRILELA 305 ++E + Sbjct: 297 DLLIESS 303 >UniRef50_B6FWP4 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWP4_9CLOT Length = 293 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 164/298 (55%), Gaps = 8/298 (2%) Query: 9 LGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE-VDVTQLKSMGFQKVFIALHGRGG 67 +GG S+ERE+SL SGA V L + V E D+ F+ALHG+ G Sbjct: 1 MGGISSEREISLKSGAGVFESLDREKYEPIKVVIDEKTDIITKIPDDVDFAFLALHGKFG 60 Query: 68 EDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLS 127 EDG +Q +LE +PY+G G ++SA+ MDK SK + + +G+P A W+ + E Sbjct: 61 EDGCVQSVLETRDIPYSGCGPLSSAMCMDKNISKKICKASGIPTADWITVKSIE------ 114 Query: 128 DKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPE 187 + I +G PV VKP+ GSSV + + ++DA+R + D EV+IE++L G E Sbjct: 115 EIDYDRIEEMGYPVFVKPNSGGSSVATFMIKEKAGIEDAVRQGLEVDTEVMIEQYLPGEE 174 Query: 188 FTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTT 247 T IL E+ P++ I+ F+D+EAKY SD LE S + L W Sbjct: 175 CTSFILDGEVFPTVSIKSEQEFFDFEAKYSSDNGAVEEVVYLEESLQNKLNGYSRMCWDA 234 Query: 248 LGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 C+ + R+D ++ S+G Y+LE NT PG+T+ SL+P +A G+S+SQL+ +++ + Sbjct: 235 FNCRAYVRVDFII-SNGVPYVLELNTLPGLTATSLIPRSAAARGISYSQLLDKLISCS 291 >UniRef50_Q8YHR9 D-alanine--D-alanine ligase A n=45 Tax=Alphaproteobacteria RepID=DDLA_BRUME Length = 353 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 161/346 (46%), Gaps = 50/346 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL----------- 50 +I VL GG SAE +VS+ S V+ L +A PV L Sbjct: 5 KMRIVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKP 64 Query: 51 --------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 ++ +F LHG GEDG +QG+ ++ +P Sbjct: 65 SSGAELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLA 124 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 G G+ SA ++DK +K L AGL A V +TR E A ALGLP+ +K Sbjct: 125 GCGIPGSANALDKDIAKRLVNEAGLSTAKSVTITREEV-----PAFSALEQALGLPIFIK 179 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-----ILP 199 P+R+GSSVG+ KVV E Q A+ F +D+++L E+++ E +L +E + Sbjct: 180 PARQGSSVGVHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSR 239 Query: 200 SIRIQP--SGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 + I P S FY Y+AKY+ D T+ PA L E ++A+ KA+ LGC R+ Sbjct: 240 AGEIVPAESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARV 299 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 D + +D + L E NT PG T S+ +G+S+ +++ R++ Sbjct: 300 DFFVTADRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 345 >UniRef50_D2M114 D-alanine/D-alanine ligase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M114_BACS4 Length = 326 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 94/275 (34%), Positives = 141/275 (51%), Gaps = 12/275 (4%) Query: 35 IDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALS 94 D + P + +F LHG GEDG++QG+L LMG P+ G V+ SA+S Sbjct: 46 HDCFFTTPDGRSL-----GNIDVIFPILHGSYGEDGSIQGLLRLMGKPFIGPSVLGSAVS 100 Query: 95 MDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGM 154 MDK SK L AGL + + A T+ +K LG PV VKP+ +GSSVG+ Sbjct: 101 MDKEVSKKLLSEAGLFIGKYFAYTKDRKGNIDYEKVK---ENLGTPVFVKPANQGSSVGI 157 Query: 155 SKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYD 211 SKV + A+ AF++D +++IE+ + G E A+LG E + + +FY Sbjct: 158 SKVYEKKKFYMAVDEAFRYDNKIVIEEEIKGREIECAVLGNEDPIASLPGEVLFTDSFYS 217 Query: 212 YEAKYL-SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLE 270 Y+AKY+ S Q PA L+ ++ +KA+ L C G R+D L +G ++ E Sbjct: 218 YDAKYINSGGVQLKVPAELDGDDVEKVKKEAIKAFKALQCNGVARVDFFLTKEGNLFVNE 277 Query: 271 ANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 NT PG T S+ P +G+ + LV +++ LA Sbjct: 278 INTLPGFTKLSMYPKLWEVSGLPYKDLVNKMIALA 312 >UniRef50_C6X2F8 D-alanine--D-alanine ligase n=3 Tax=Flavobacteriaceae RepID=C6X2F8_FLAB3 Length = 339 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 155/329 (47%), Gaps = 32/329 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM-------- 53 +AV++GG S E VSL SG + L + Y V + + L Sbjct: 14 KKNVAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKDEWYFLDDREQKVPVNK 73 Query: 54 -------------GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 F F +HG+ GE+G LQ + +G YTG G SAL+ +K + Sbjct: 74 ADFSVNLDSGFDVKFDVCFNIIHGKPGENGELQAYWDTIGQKYTGCGFYQSALTFNKKDT 133 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 + G+P A V + + E I L LP+ VKP++ GSS+G+SKV + Sbjct: 134 LAVLSKYGIPAAKSVYIRKGEAIDEDG-----IIEDLKLPLFVKPNQSGSSLGISKVKDK 188 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKY 216 + Q A+ AF+ D+EVLIE +L G E +V ++ +L I F+DYEAKY Sbjct: 189 SEFQKAIDFAFEQDDEVLIESFLDGMEVSVGVVDFNGESIVLGITEIVSHKEFFDYEAKY 248 Query: 217 LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 ++ PA ++ ++ + KA+ +LG G+ R + ++ G Y+LE NT+PG Sbjct: 249 -EGASEEITPARIDDETRQKVEEIAKKAYNSLGMSGFSRSEFIIMG-GTPYMLEMNTNPG 306 Query: 277 MTSHSLVPMAARQAGMSFSQLVVRILELA 305 + S++P A+ G+S L +E A Sbjct: 307 FSPASILPQQAKIYGISIKDLCGNEVEKA 335 >UniRef50_A0LWW5 D-alanine--D-alanine ligase n=9 Tax=Actinomycetales RepID=A0LWW5_ACIC1 Length = 333 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 162/308 (52%), Gaps = 6/308 (1%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALH 63 + VL GG S EREVSL S V+ LR G+D VD + +L + VFIA+H Sbjct: 6 HVLVLAGGVSFEREVSLASARRVIEALRRLGVDVDLVDVDASVLDRLTADPPDAVFIAMH 65 Query: 64 GRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFE 123 G GEDG L+ +L+L G+PY G+ + L+ DK +K + Q AG+ +A ++ Sbjct: 66 GSEGEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIR 125 Query: 124 K-GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKW 182 G + LGLP++VKP+R GS++G++ V A AL F +D L+E++ Sbjct: 126 DLGGHQLLDRCVRRLGLPLVVKPARGGSALGVTIVREATAFAHALVTCFAYDTVALVEQY 185 Query: 183 LSGPEFTVAILGE-----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 + G E ++++ + LP + I+P +DY A+Y + T+Y PA + + Sbjct: 186 VVGTELAISVVEDDDGTPRALPPVEIRPVDGMFDYAARYTAGMTEYHVPARITETARDRA 245 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 + L+A LG + R DV++ +D + LE N +PGMT SL+PMAA + G+ L Sbjct: 246 VDVALRAHQALGLRDLSRTDVIVTADDEVLYLETNVAPGMTPTSLLPMAAAEVGIDLGTL 305 Query: 298 VVRILELA 305 +L A Sbjct: 306 CRDLLVRA 313 >UniRef50_Q88EV6 D-alanine--D-alanine ligase A n=3 Tax=Pseudomonas putida RepID=DDLA_PSEPK Length = 352 Score = 306 bits (784), Expect = 9e-82, Method: Composition-based stats. Identities = 107/347 (30%), Positives = 158/347 (45%), Gaps = 50/347 (14%) Query: 1 MTDK-IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLK-------- 51 M IA++ GG S+E V+L S A + A L G + V + + Sbjct: 1 MKQNVIALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPG 60 Query: 52 ----------------------------SMGFQKVFIALHGRGGEDGTLQGMLELMGLPY 83 +G +F ALHGR GEDGT+QG+ + GLP Sbjct: 61 AVDRSAPLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPC 120 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 GSGV+ SA++MDK +K + Q AGL V PW+A+ + L + + + V Sbjct: 121 VGSGVLGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMRPWEELVECLGSST------LFV 174 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILP 199 KP+ GSS+G+S+V A +A + D +VL+E + G E +L E Sbjct: 175 KPATSGSSIGVSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASV 234 Query: 200 SIRIQ--PSGTFYDYEAKYLSDE-TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRI 256 I +YDY+AKY S+ T P+ L A +QAL ++A+ L KG+ R+ Sbjct: 235 VGEIIKKEGHAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARV 294 Query: 257 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 D L +G+ L E NT PG TS S+ P +G +LV ++E Sbjct: 295 DFFLTEEGEIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVE 341 >UniRef50_B8DVN7 D-alanine--D-alanine ligase n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=DDL_BIFA0 Length = 378 Score = 305 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 100/374 (26%), Positives = 155/374 (41%), Gaps = 70/374 (18%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPV----------DPKEVDVTQLK 51 ++AVL GG + E +S S A+ + L +A P+ D ++ L Sbjct: 3 KTRVAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLA 62 Query: 52 SM-------------------------------------GFQKVFIALHGRGGEDGTLQG 74 V ALHG GEDGT+QG Sbjct: 63 EGLPEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQG 122 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE- 133 + E+MG+PY G GV+ASA MDK +K+L + AG+PVAP + L ++ E Sbjct: 123 LFEMMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEE 182 Query: 134 ------ISALGLPVIVKPSREGSSVGMSKVVAENALQDALR---LAFQHDEEVLIEKWLS 184 + L P+ VKPSR GSS G++KV A +HD VL+E+ + Sbjct: 183 FLRQVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGID 242 Query: 185 GPEFTVAILG------EEILPSIRIQ------PSGTFYDYEAKYLSDETQYF-CPAGLEA 231 E A++ + FYD+++KY+ + + PA + Sbjct: 243 AREIECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGD 302 Query: 232 SQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAG 291 A ++ ++A+ + G R+D + +DG + E NT PG TS S+ P A G Sbjct: 303 DLIARVRETAVRAFDAVDGMGLSRVDTFVTADGDVLVNEINTLPGCTSISMFPQAWEAMG 362 Query: 292 MSFSQLVVRILELA 305 + F +V ++E A Sbjct: 363 IPFRTVVTDLIEGA 376 >UniRef50_UPI0001C31F0A D-alanine/D-alanine ligase n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31F0A Length = 309 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 112/305 (36%), Positives = 170/305 (55%), Gaps = 8/305 (2%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIAL 62 K V GG S EREVS SG LR+ G +D V ++ VFIAL Sbjct: 1 MKALVAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGADFVDVVQRAEPDFVFIAL 60 Query: 63 HGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF 122 HG GGEDGT+Q +LE++ +PYTGS +ASAL +DK K + + G+P PW + T+ F Sbjct: 61 HGVGGEDGTVQDLLEILQVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAF 120 Query: 123 EK-GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 G A +VKP+R+GSS G+S V L A+ A +D+ VL+E+ Sbjct: 121 ADYGAGKTLDALWQQFDGRAVVKPARQGSSFGLSVVQERAQLGGAVLGAMSYDDRVLLER 180 Query: 182 WLSGPEFTVAILGE----EILPSIRIQ-PSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 ++ G E V +LG E LP + I S +Y ++A Y +++ AGL + +A+ Sbjct: 181 YVPGRELAVTVLGRSDAPEPLPVVEIVMASEEYYSFQAHYEIGQSEVRL-AGLPDAVDAH 239 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 ++A+ +A++ GC+ + R+D+ L+ D + ++LE NT PG+T P+AA AG++F+Q Sbjct: 240 VRAIAAEAYSAAGCRDFARVDIRLEGD-EPWVLEINTIPGLTETGPTPLAAEHAGLTFAQ 298 Query: 297 LVVRI 301 L+ RI Sbjct: 299 LIERI 303 >UniRef50_B0S9U5 D-alanine--D-alanine ligase n=2 Tax=Leptospira biflexa serovar Patoc RepID=DDL_LEPBA Length = 349 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 108/352 (30%), Positives = 166/352 (47%), Gaps = 52/352 (14%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV-------------- 45 M+ KIA+L GG S E +S+ S A + A + D PV Sbjct: 1 MSKIKIALLFGGISGEHIISVRSSAFIFATIDREKYDVCPVYINPNGKFWIPTVSEPIYP 60 Query: 46 ------------------------DVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGL 81 + + MGF F+ LHG GEDG +QG L+ +G+ Sbjct: 61 DPSGKTEIEFLQEFNKANAIVSPSEPADISQMGFLSAFLGLHGGAGEDGRIQGFLDTLGI 120 Query: 82 PYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPV 141 P+TGSGV+AS+L+MDK R+ +L++ G+PVAP++ L + ++ + PV Sbjct: 121 PHTGSGVLASSLAMDKYRANILFEAMGIPVAPFLELEKG----KTDPRKTLLNLSFSYPV 176 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----- 196 +KP+ GSSV + F D+ VL++K +SG E ++ +L + Sbjct: 177 FIKPTLGGSSVNTGMAKTAEEAMTLVDKIFVTDDRVLVQKLVSGTEVSIGVLEKPEGKKR 236 Query: 197 ---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 L I+P F+D+EAKY ++ PA + LQ L+ LGCKG+ Sbjct: 237 NPFPLVPTEIRPKSEFFDFEAKYTKGASEEITPAPVGDEVTKTLQEYTLRCHEILGCKGY 296 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R D ++ SDG Y+LE NT PGMT SL+P A+ G++ + +LE++ Sbjct: 297 SRTDFII-SDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWLLEIS 347 >UniRef50_Q6A5C1 D-alanine--D-alanine ligase B n=4 Tax=Propionibacterium acnes RepID=Q6A5C1_PROAC Length = 327 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 105/308 (34%), Positives = 160/308 (51%), Gaps = 5/308 (1%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M + VL GG S +R++SL SG V LR G + D + L++ VF Sbjct: 13 MLQPVVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFP 72 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GE+G L +L+LMG+PY GS +S DK + AG+ VAL Sbjct: 73 MLHGGLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHD 132 Query: 121 EF-EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 F E G + GLPVIVKP+R GSS+G++KV + L A+ A+ +D+ V++ Sbjct: 133 VFRELGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAVANAYAYDDMVVV 192 Query: 180 EKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+++ G E + ++ G +LP++ I+P G YDY A Y ET+ PA + + Sbjct: 193 EEFIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQ 252 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 A+ L G R+D ++D G+ LEA +PGMT+ SLVP+A + AG+ Sbjct: 253 TATAMARVVQKELDFSGISRVDAIVDESGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLG 312 Query: 296 QLVVRILE 303 ++ R+++ Sbjct: 313 EVCSRLVD 320 >UniRef50_C9RJ24 D-alanine/D-alanine ligase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJ24_FIBSS Length = 344 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 102/341 (29%), Positives = 167/341 (48%), Gaps = 41/341 (12%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG------- 54 ++ VL+GG S E +VS+ SG V+ + + +PV + S Sbjct: 3 RLRVLVLMGGPSTEHDVSVVSGTGVVRAMDPEKYNIHPVLIDKDGTWHWSSRELSPYQKA 62 Query: 55 ----------------------------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGS 86 F+ALHG+ GEDG +Q MLE +PYTG Sbjct: 63 NFSENYFHSLEGTAANKKKSPALSELPSADIAFLALHGKWGEDGHIQAMLENWNIPYTGC 122 Query: 87 GVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPS 146 G++ASAL+MDK++SK +++ G+P P+ + + +F D ++ LG P+++K Sbjct: 123 GLLASALAMDKIKSKEIYRANGIPTPPYRVIWKHDF---TGDTLVSVADELGYPLVIKDP 179 Query: 147 REGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL-GEEILPSIRIQ- 204 GSS+G+ + + F+ +L EK+++G E + + GE+ LP ++ Sbjct: 180 LGGSSIGIGIAKNLDEAGKIAQDLFKDSNRLLCEKFIAGGEASCGYIEGEKPLPPTEMRM 239 Query: 205 PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDG 264 + ++D+EAKY + E Q PA A +Q LV A LG G+ R DV + DG Sbjct: 240 TTREYFDFEAKY-NGECQEVTPAEFAPELTARIQELVKNAHYALGGAGYSRTDVRITKDG 298 Query: 265 QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + + +E NT PGMT SL+P A G+++SQL+ I++ + Sbjct: 299 ELFAIETNTLPGMTPTSLLPQQAACVGITYSQLIDLIIDKS 339 >UniRef50_Q8D2Y5 D-alanine--D-alanine ligase n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=DDL_WIGBR Length = 350 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 156/347 (44%), Gaps = 49/347 (14%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------------- 45 M +AVL GG S E E+SL S +++ + + + + ++ Sbjct: 1 MKKTVAVLFGGESKEHEISLQSSISIINAIDKKKYNIILIGVEKNGKIGIRSINNYILFK 60 Query: 46 ---------------------------DVTQLKSMGFQKVFIALHGRGGEDGTLQGMLEL 78 + K + +F LHG GE+G QG+ Sbjct: 61 YNINYIKLAPAVSYLYIIPGKNNYQFYSLKNKKMLKIDVIFSILHGSNGENGAFQGLFNT 120 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 + P+ GS V++S++ MDK SK + G+ V P + L + + K I+ + Sbjct: 121 IYTPFVGSNVLSSSICMDKDISKRILSTFGISVVPSITL----YYENYKKKINKIINNIK 176 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-- 196 P +KPS +GSS G++ +L++++ +AF + +++LIE ++ G E V +LG Sbjct: 177 FPCCIKPSNQGSSFGVNVANDFISLKESIDVAFLYSKKILIEPFIQGREIEVGVLGNRNV 236 Query: 197 -ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 I+ FYDY+ KY+S +T+ PA + ++ + A+ +L C R Sbjct: 237 ISSVCGEIKFKKIFYDYKEKYISKKTKIIIPAKISNEISNKIKKIAKLAFISLECSIMAR 296 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 +D L + + +L E NT PG T +S+ P ++G+ F L+ +++ Sbjct: 297 VDFFLTKNKKIFLNEINTIPGFTKNSIYPKLWSKSGLDFKSLINKLI 343 >UniRef50_B0UB90 D-alanine--D-alanine ligase n=7 Tax=Rhizobiales RepID=DDL_METS4 Length = 382 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 109/351 (31%), Positives = 153/351 (43%), Gaps = 53/351 (15%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK-EVDVTQL--------- 50 M +A+L GG SAE EVS+ S V L P+ E +L Sbjct: 1 MRRNVALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPPLAPGEA 60 Query: 51 ----------------------------KSMGFQKVFIALHGRGGEDGTLQGMLELMGLP 82 S F V LHG GEDGT+QG L+L G+P Sbjct: 61 PAMVREGPRVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALDLAGVP 120 Query: 83 YTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVI 142 Y GSGV+ SA +MDK +K L + AGLP+ P++ + E L Sbjct: 121 YVGSGVIGSAAAMDKDVAKRLMRDAGLPIVPYLVAGPRRGVAYTEAVEALESRTL----F 176 Query: 143 VKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS-GPEFTVAILGE-----E 196 VKP+ GSSVG+S+V AL AF +DE++LIE+ + E A+L Sbjct: 177 VKPANMGSSVGVSRVADAGQFDQALAHAFAYDEKILIERAVPRAREIEFAVLETAEGEVR 236 Query: 197 ILPSIRIQP--SGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 253 + P I P + FY Y+AKY+ D PA L + + L +A+ L C G Sbjct: 237 VSPPGEIAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALACAGL 296 Query: 254 GRIDVMLDSDGQ--FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 R+D+ LD D ++ E NT PG T+ S+ P AG++ L+ ++ Sbjct: 297 ARVDLFLDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 347 >UniRef50_C9PTP4 D-alanine-D-alanine ligase n=9 Tax=root RepID=C9PTP4_9BACT Length = 392 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 32/330 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD--------------- 46 IA++ GG S+E EVSL S + + + + Y VD + ++ Sbjct: 64 KRNIAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERAIIDK 123 Query: 47 -----VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 V + + + F +I +HG GE+G +QG EL+ +PY+ SGV+ AL+ DK Sbjct: 124 NDFSFVHEGEQVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLN 183 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN 161 +G G+ VA + + R E A + LG+P VKP+ +GSS G+SKV + Sbjct: 184 NYLRGFGVNVANSILVRRGEEFGIDE---RAVEAQLGMPCFVKPAADGSSFGVSKVKNID 240 Query: 162 ALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYL 217 L ALR A D+ +IE +L G E +V ++LP+ + F+DY+AKY Sbjct: 241 QLAPALRKALMEDDSAVIESFLDGTEISVGCYRVKGETKVLPATEVVSHNEFFDYDAKY- 299 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML----DSDGQFYLLEANT 273 + + + PA + + + + L C G RID +L D + L+E NT Sbjct: 300 NGQVEEITPARIADETARRVAEETARIYEILNCNGIIRIDYILTKEPDGTDKINLIEVNT 359 Query: 274 SPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 +PGMT S +P R AGM ++ I+E Sbjct: 360 TPGMTPTSFIPQQVRAAGMEMKDVLSEIVE 389 >UniRef50_Q8R778 D-alanine--D-alanine ligase n=2 Tax=Thermoanaerobacteraceae RepID=DDL_THETN Length = 389 Score = 303 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 160/363 (44%), Gaps = 64/363 (17%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV----------DVTQLKS 52 K+AV+ GG S E EVS+ +G V+ + + + PV D++ K Sbjct: 2 LKVAVMFGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKGLLDISNYKD 61 Query: 53 M--------------------------------------GFQKVFIALHGRGGEDGTLQG 74 + +F A HG GEDGT+QG Sbjct: 62 IPSLLKKCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQG 121 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 + +L +PY GSGV+ SA MDK+ K +++ LP+ ++ R E+EK Sbjct: 122 LFQLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIE 181 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL-SGPEFTVAIL 193 S L P+ VKP+ GSS+G+SK + L DA+ +A +D ++++E+ + E +++ Sbjct: 182 SKLKYPMFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDRKIIVEEAVKDPMEVNCSVM 241 Query: 194 GEEILPSIRI----QPSGTFYDYEAKYL------SDETQYFCPAGLEASQEANLQALVLK 243 G + I + P F Y+ KY+ T PA + + +Q L K Sbjct: 242 GIDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKK 301 Query: 244 AWTTLGCKGWGRIDVMLDSDG-QFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 + L C G RID +L+ + + Y+ E NT PG S + G+SF +L+ R++ Sbjct: 302 VFQILDCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLI 357 Query: 303 ELA 305 E A Sbjct: 358 EYA 360 >UniRef50_D2LR31 D-alanine/D-alanine ligase n=2 Tax=Firmicutes RepID=D2LR31_BACS4 Length = 404 Score = 303 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 159/369 (43%), Gaps = 68/369 (18%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV----------DVTQL 50 M ++AV+ GG S E EVS+ S + + E + PV + D+ + Sbjct: 8 MRTRVAVIFGGMSVEHEVSVISALQAIQNMDESRYEIIPVYISKEGAWYTGDTLLDIEEY 67 Query: 51 KSMG------------------------------------FQKVFIALHGRGGEDGTLQG 74 K++ F +HG EDG LQG Sbjct: 68 KNLKGLLAKSQRIQLLREGDNRVIINKEPKPKFGKAYINEIDVAFPIVHGTFAEDGVLQG 127 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 LEL+GLPY G V++S+ MDK+ K +++ +GLP+ +V ++ + + Sbjct: 128 YLELLGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYVWFYSTKWNEDQDELVKKVE 187 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAIL 193 L PVIVKP+ GSSVG+SK + L++A+ LA Q +++IEK + E ++L Sbjct: 188 GKLQYPVIVKPANLGSSVGISKAANVDELEEAVELASQFANKIVIEKMVQNMTEINCSVL 247 Query: 194 GE----EILPSIRIQPSGTFYDYEAKYLS------------DETQYFCPAGLEASQEANL 237 G+ E ++ + YE KY + T PA + + + Sbjct: 248 GDYEAAEASVCEQVLGNDEILSYEDKYAGGGSKGGGASKGMESTNRIIPADISEEKTKEI 307 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 Q L + A+ LGC G RID ++D+D ++ E NT PG SL G + + Sbjct: 308 QELAVAAFQVLGCSGVSRIDFLIDNDTNNVFINEINTIPG----SLSFYLWEPTGKPYKE 363 Query: 297 LVVRILELA 305 L +++LA Sbjct: 364 LTNDLIQLA 372 >UniRef50_C7RG73 D-alanine/D-alanine ligase n=5 Tax=Anaerococcus RepID=C7RG73_ANAPD Length = 345 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 161/338 (47%), Gaps = 41/338 (12%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQ------- 56 + +L GG S+E ++SL S + L E V + Sbjct: 3 NVYILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSEAFDKIDTDNEFDL 62 Query: 57 ---------------------------KVFIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 V A+HG GEDGT+Q +L+++G+ Y G+G++ Sbjct: 63 VKEVKENKTKSIADFLTCLSKEDYSKTIVIPAVHGTYGEDGTIQALLDVIGIAYIGNGLL 122 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 +SA+ MDK+ S +++ L A ++ + F+ +D+ + E +GLP+IVKPS G Sbjct: 123 SSAICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEE---IGLPLIVKPSANG 179 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPS 206 SSVG+SKV +N L A A ++D++VL+E+ + G E A++G ++ Sbjct: 180 SSVGVSKVTNKNELLAAGDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVSEPAAYISD 239 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQF 266 TF DY+AKY S T+ P LE + Q V +A+ GC+G+ R+D+ L D F Sbjct: 240 HTFLDYDAKYFSKSTKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVDIFLGKDNNF 299 Query: 267 YLLEANTSPGMTSHSLVPMAARQA-GMSFSQLVVRILE 303 Y+ E NT PG T S SFS+++ R+++ Sbjct: 300 YVNEINTFPGFTPSSFFARLCELMYNESFSEVLDRLIK 337 >UniRef50_A8SLF9 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLF9_9FIRM Length = 357 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 95/341 (27%), Positives = 165/341 (48%), Gaps = 38/341 (11%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE--------------VDVT 48 + +L GG S E E+S+ + +V+ L +P+ + + Sbjct: 2 KNLYLLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTKNIENEK 61 Query: 49 QLKSMGF-------------QKV------FIALHGRGGEDGTLQGMLELMGLPYTGSGVM 89 +L GF V F A+HG EDGT+QG ++M L Y G+ V+ Sbjct: 62 ELVVEGFGNVADSISNFFAKDFVNENAIFFPAMHGTFSEDGTIQGFFDIMDLTYVGNNVL 121 Query: 90 ASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREG 149 +SA+ MDK + ++ G G+ + +T+ EF K + + +G +KP G Sbjct: 122 SSAVCMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGEVSFIKPCNAG 181 Query: 150 SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---EILPSIRIQPS 206 SSVG++KV + ++ AL AF++D VL+E+ + G E V ++G + ++ + Sbjct: 182 SSVGVTKVTKKEEIEPALIEAFKYDNRVLVEEAVIGDELQVLVMGNNILKASLPGGVKVT 241 Query: 207 GTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML-DSDGQ 265 F+DYEAKY + T + P L + +Q++ +A+ CKG+ R+D+ + DSD + Sbjct: 242 REFFDYEAKYFDETTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFARVDIFVRDSDRK 301 Query: 266 FYLLEANTSPGMTSHSLVPMA-ARQAGMSFSQLVVRILELA 305 + E NT PGMT+ S+ P + ++S + ++ELA Sbjct: 302 MLVNEINTIPGMTAVSMAPAMYMKTFKKTYSDFLDELIELA 342 >UniRef50_B0MP08 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MP08_9FIRM Length = 397 Score = 302 bits (775), Expect = 8e-81, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 149/366 (40%), Gaps = 65/366 (17%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-------------V 47 M ++ V GG S E EVS+ S + + + PV + + Sbjct: 1 MKIRVGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASY 60 Query: 48 TQLKSM--------------------------------GFQKVFIALHGRGGEDGTLQGM 75 LKS+ F +HG EDG QG Sbjct: 61 RNLKSLLKESRRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGY 120 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 L+ +G+PY G V++SA+ MDK K +++ G+PV + +++ K + + Sbjct: 121 LQTIGVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKA 180 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILG 194 + P+IVKP GSSVG+ + L +AL AF + ++L+E ++ E ++ G Sbjct: 181 KIAYPLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYASKLLVEPAITNLKEINCSVCG 240 Query: 195 E----EILPSIRIQPSGTFYDYEAKYLSDET----------QYFCPAGLEASQEANLQAL 240 + + Y+ KY++ + + PA + ++ L Sbjct: 241 DYATAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTL 300 Query: 241 VLKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 +KA+ +LG G RID M+D +G YL E NT PG SL G+ +S+L+ Sbjct: 301 AVKAFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLD 356 Query: 300 RILELA 305 ++ LA Sbjct: 357 EMISLA 362 >UniRef50_B7GU04 D-alanine--D-alanine ligase n=19 Tax=Bacteria RepID=DDL_BIFLI Length = 395 Score = 302 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 140/281 (49%), Gaps = 20/281 (7%) Query: 42 PKEVDVTQLKSMG-FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 P L S+G V LHG GEDGT+QG+LE+MG+PY G GV ASA MDK + Sbjct: 112 PDPEMHHALTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYT 171 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 K++ AG+P AP V + F E + L P+ +KPSR GSS G++KV Sbjct: 172 KVVLGAAGIPTAPGVTVDARNF-TAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKA 230 Query: 161 NA-------LQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILP------SIRIQ--- 204 + L A+ A +HD +VL+E+ + G E A+L + I Sbjct: 231 DDRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDH 290 Query: 205 -PSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS 262 FYD+++KY+ + PA L S +++ + +A+ + G R+D + Sbjct: 291 QNDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP 350 Query: 263 DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 DG + E NT PG T S+ P A G+S+++L+ R++E Sbjct: 351 DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391 Score = 50.0 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 20/54 (37%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGF 55 ++ VL GG + E +S S A VL + + PV + + Sbjct: 3 KKRVVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56 >UniRef50_A0M4U5 D-alanine--D-alanine ligase n=8 Tax=root RepID=DDL_GRAFK Length = 326 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 156/329 (47%), Gaps = 31/329 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGID------------AYPVDPKEVDVT 48 M KIA+ +GG S+E +S+NSG V L + D + Sbjct: 1 MKKKIAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILKGEWFVVADDDTPYPIN 60 Query: 49 Q--------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 + K + F VF +HG GE+G LQ LEL+G+P T SAL+ +K Sbjct: 61 KSNFTVKINDKVIQFDCVFNTIHGTPGENGLLQAYLELIGIPQTSCDYYQSALTFNKRDL 120 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 + + G+ A L + + + +GLP VK +R GSS G++KV E Sbjct: 121 ISVLRPYGIKAATNYFLNKDQEINTKE-----IVDKVGLPCFVKANRAGSSFGVTKVKTE 175 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKY 216 + + A + AF D+E +IE +L G E +V ++ + LP I P G F+DYEAKY Sbjct: 176 DEIISAAKTAFTEDDEAIIESFLDGTEVSVGVITYKGKVLALPVTEIIPDGEFFDYEAKY 235 Query: 217 LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 L ++Q PA + +Q + + + L KG R + + +G+ + +E NT+PG Sbjct: 236 L-GKSQEITPARISEEDTKKVQDIAIMIYKKLKMKGLSRSEFIF-HEGEPHFIEMNTNPG 293 Query: 277 MTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ S++P A +AG+S L +E A Sbjct: 294 ISQASILPQQAEKAGISLKDLFGSTIEAA 322 >UniRef50_A6GXD5 D-alanine--D-alanine ligase n=8 Tax=Bacteroidetes RepID=DDL_FLAPJ Length = 328 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 102/326 (31%), Positives = 159/326 (48%), Gaps = 30/326 (9%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA------------------YPVDPKE 44 +AV++GG S E +SL SG +L L + + YP++ + Sbjct: 1 MNVAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKAD 60 Query: 45 VDVTQL-KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLL 103 T+ F +HG GEDG LQ EL+ +PYTG SAL+ +K + + Sbjct: 61 FSFTKNGVITKFDVAINTVHGTPGEDGHLQSYWELIDIPYTGCNFYQSALTFNKRDTLSV 120 Query: 104 WQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENAL 163 +P A + L + + G ALGLP VKP++ GSS+G+SKV A + L Sbjct: 121 LTKFNIPKAKSIYLRKGDVIDGNE-----IKKALGLPFFVKPNQSGSSLGVSKVDALDQL 175 Query: 164 QDALRLAFQHDEEVLIEKWLSGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSD 219 + AL AF D E+LIE +L+G E +V +L ++L I F+DYEAKYL Sbjct: 176 EKALEFAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVLGITEILSQNDFFDYEAKYL-G 234 Query: 220 ETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTS 279 +++ PA + +E + K + +LG G+ R D ++ +G + +E NT+PG++ Sbjct: 235 KSEEITPARISKEEEILVAESAKKIYNSLGMSGFSRTDFII-MNGIPHFIEINTNPGLSP 293 Query: 280 HSLVPMAARQAGMSFSQLVVRILELA 305 S+ P A A M Q++ + LA Sbjct: 294 QSIFPQQAMFAKMDMPQMLDNEITLA 319 >UniRef50_C1C760 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Streptococcus pneumoniae RepID=C1C760_STRP7 Length = 321 Score = 301 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 99/326 (30%), Positives = 151/326 (46%), Gaps = 38/326 (11%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV---DVTQLKS------- 52 KI VL GG S EREVS NS + L G D +D + ++ +++ Sbjct: 5 KKIVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNK 64 Query: 53 -------------MGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 VF+A HG GE+G LQ + ++ + YTG+ +++A+SMDK Sbjct: 65 QKVEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKL 124 Query: 100 SKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA 159 SK++ G+ A + + R + P+++KP R GSS G+ + Sbjct: 125 SKIVASSVGIKCASNLMVDRIQAND--------------FPIVIKPIRSGSSKGIKILQN 170 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSD 219 + + + +EK++ G EF+V ILGE +LP I I+ FYDY KY Sbjct: 171 KKQFDIYYKEHPELGS-FFVEKYIKGREFSVGILGETVLPVIEIKVKNGFYDYNNKYTVG 229 Query: 220 ETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTS 279 + PA + LQ K LG + R D ++D G Y +E+N+ PGMT Sbjct: 230 AAEEVVPAKISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEKGDVYFIESNSLPGMTK 289 Query: 280 HSLVPMAARQAGMSFSQLVVRILELA 305 SL+P A+ AG+ F L RI+EL+ Sbjct: 290 TSLLPQEAKAAGIDFPNLCERIIELS 315 >UniRef50_B0S093 D-alanine--D-alanine ligase n=2 Tax=Finegoldia magna RepID=DDL_FINM2 Length = 350 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 160/342 (46%), Gaps = 43/342 (12%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDA----------------------- 37 M I VL GG S E EVS+ S ++ L + + Sbjct: 1 MQKNIYVLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKS 60 Query: 38 -------YPVDPKEVDVTQLKSMGFQ--KVFIALHGRGGEDGTLQGMLELMGLPYTGSGV 88 + E ++ + + +F A+HG GEDGT+QG ++++ LP+ G V Sbjct: 61 DEELILDTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNV 120 Query: 89 MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSRE 148 + SAL MDK + +++ +P A +V L + + + + V VKP Sbjct: 121 LGSALCMDKGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKTSKA-----VYVKPCNA 175 Query: 149 GSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQ 204 GSSVG+ + E L+ A++ AFQ+D +L+E+ + GPE +A++G + P + Sbjct: 176 GSSVGVMRAETEEELEKAIQNAFQYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQI 235 Query: 205 PSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDG 264 F+DY+AKY +T+ P ++ E + L K + + G+ R+D+ + D Sbjct: 236 HDVEFFDYDAKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV-KDN 294 Query: 265 QFYLLEANTSPGMTSHSLVPMAARQAG-MSFSQLVVRILELA 305 + ++ E NT PG+T HS+ P+ + MS S++ ++ LA Sbjct: 295 ELWVNEINTVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336 >UniRef50_D1BRV4 D-alanine/D-alanine ligase n=16 Tax=Actinomycetales RepID=D1BRV4_XYLCX Length = 349 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 112/309 (36%), Positives = 167/309 (54%), Gaps = 6/309 (1%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 ++ VL GG S ER+VSL SG V LR G+D D + L V+ Sbjct: 36 ALRVVVLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRYLDEHRPDVVWPL 95 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GGEDG+L+ +LEL G+PY G+G AS L+ DK +K Q AGL W+ L + Sbjct: 96 LHGAGGEDGSLRDVLELAGVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQEL 155 Query: 122 FEKGLSDKQLAE-ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 F + L+ GLPV+VKP+R GS++G+++V +++ L A+ F + + LIE Sbjct: 156 FRDLGAQGVLSIVAERFGLPVVVKPTRGGSALGVTRVTSKDGLARAMVDCFAYGDSALIE 215 Query: 181 KWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEAN 236 + + G E V+++ G LP++ I G YD++A+Y +YF PA L Q A+ Sbjct: 216 RAVDGVEIAVSVIDGMDGPVALPAVEIIVDGP-YDFDARYNPGRVEYFAPARLSPDQAAH 274 Query: 237 LQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQ 296 + + + A L + R D++L +DG +LE N +PGMT SL+P AA AG Sbjct: 275 VAGVAVAAHQALDLRHLSRTDLILQTDGTAQVLEVNVAPGMTETSLLPQAAVAAGHDLGT 334 Query: 297 LVVRILELA 305 L +++E A Sbjct: 335 LYRQVVEHA 343 >UniRef50_C0BAK0 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BAK0_9FIRM Length = 320 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 86/318 (27%), Positives = 143/318 (44%), Gaps = 38/318 (11%) Query: 27 LAGLREGGIDAYPVDPKEVDVTQLKSMG-------------------------FQKVFIA 61 + L + + V + + F Sbjct: 1 MKHLDKDKYEITLVGIAKDGKWYILKQEDNDLSKDTWLDGAEVVEGVFNLLRSQDVAFPV 60 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GEDGT+QG+ EL LPY G V AS+ MDK+ +K +++ AG+P V + + Sbjct: 61 LHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKVFESAGIPQVKSVYVKKRN 120 Query: 122 FE---------KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ 172 + + + + + LG+P +K SR GSSVG + E L L A + Sbjct: 121 DGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGCYRCDKEEDLMAKLEEAAK 180 Query: 173 HDEEVLIEKWLSGPEFTVAILGEE---ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGL 229 +D +++E+ + E A+LG + + +I P G FY +E+KY E++ PA + Sbjct: 181 YDTHIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYTFESKYEDAESKTCIPAKV 240 Query: 230 EASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAAR 288 + + ++ ++A+ + G R+D LD YL E NT PG TS S+ P Sbjct: 241 DEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLNEINTLPGFTSISMYPQLME 300 Query: 289 QAGMSFSQLVVRILELAD 306 G S+S+L+ +++E+AD Sbjct: 301 DYGYSYSELLDKLIEIAD 318 >UniRef50_A9N8L3 D-alanine--D-alanine ligase n=6 Tax=Coxiella burnetii RepID=DDL_COXBR Length = 372 Score = 300 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 91/350 (26%), Positives = 149/350 (42%), Gaps = 48/350 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI-----------DAYPVDPKEVDVT-- 48 I+VL GG S E E+S+ S ++ L Y +D E+ + Sbjct: 4 KLHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFLAHS 63 Query: 49 -----------------------------QLKSMGFQKVFIALHGRGGEDGTLQGMLELM 79 + VF +HG GEDG LQG+LEL+ Sbjct: 64 PDHLVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELL 123 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 LPY G+ V +SA+ M+K +K + + G+PV W L+ + +G+ + L Sbjct: 124 NLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSE- 182 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGE---E 196 + VK GSSV V E A++ F++D+ +++E + G E A+LG + Sbjct: 183 -LFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIRGREIECAVLGNGAPK 241 Query: 197 ILPSIRIQPSGTFYDYEAKYLS-DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 I P +Y Y+AKYL + L S +Q + + A+ + C G R Sbjct: 242 ASLPGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMAR 301 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +D + + + + E NT PG T+ S+ P +G+ L+ +++ELA Sbjct: 302 VDFFVTPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA 351 >UniRef50_Q7V0F6 D-alanine--D-alanine ligase n=8 Tax=Prochlorococcus RepID=DDL_PROMP Length = 355 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 153/349 (43%), Gaps = 45/349 (12%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREG----GIDAYPVDPKEVDVT--------- 48 I ++ GG S E +VS++S V L + V Sbjct: 6 KKCIGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLVL 65 Query: 49 -------------------------QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPY 83 ++ G F LHG GEDG + G+L+ P Sbjct: 66 LKEKRKNETIDKNQVFPKREINFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPI 125 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKG--LSDKQLAEISALGLPV 141 G G++ SAL MDK+ K ++ +P ++ + + ++ + I L LPV Sbjct: 126 VGGGILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPV 185 Query: 142 IVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSI 201 VKP+ GSS+G+SK + + AL+ A++ D ++IE+ L E I+G L + Sbjct: 186 FVKPANSGSSLGISKAKTRSEIIKALQKAWEIDSRIVIEEGLDVRELECGIIGNLKLTAS 245 Query: 202 RIQP---SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 I S +YDY++KY D Q PA +++ ++ + +++ L G+ R+D Sbjct: 246 EIGEVSYSTDWYDYDSKYSMDN-QIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDF 304 Query: 259 MLDS-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELAD 306 L+ + +L E NT PG TS S+ PM +G++ QLV ++++++ Sbjct: 305 FLEKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDISS 353 >UniRef50_A4CP91 D-alanylalanine synthetase n=5 Tax=Flavobacteriales RepID=A4CP91_9FLAO Length = 329 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 105/328 (32%), Positives = 163/328 (49%), Gaps = 31/328 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------------PVDP 42 T KIAV++GG S+E E+SL SG V L D Y PV Sbjct: 4 TKKIAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGREYPVSR 63 Query: 43 KEVDVT-QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 + V + ++ F VF A+HG GE+G +Q EL+G+P T G +A++ +K Sbjct: 64 HDFSVELEDGTLRFDCVFNAIHGTPGENGLMQAYFELIGMPQTSCGFYQAAVTFNKRDLL 123 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN 161 + + AG+P A L R + + + A+GLP VK +R GSS G+S V + Sbjct: 124 GILKSAGVPAARSYHLDRGQELNQQA-----ILDAVGLPCFVKANRAGSSFGVSLVREAS 178 Query: 162 ALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYL 217 LQ A+ A + D+E+LIE L G E +V ++ +LP I F+DY+AKY Sbjct: 179 GLQAAVENALKEDDEILIEAALQGTEVSVGVIRYQGATRVLPITEIVSENDFFDYQAKY- 237 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 +++ PA + ++ L + + L G+ R + +L DG+ +LLE NT+PG+ Sbjct: 238 EGKSREITPARIPEDTAEKVRELAARIYDRLRMTGYSRSEFIL-VDGEPHLLEVNTTPGL 296 Query: 278 TSHSLVPMAARQAGMSFSQLVVRILELA 305 T S++P A AG+S ++L + A Sbjct: 297 TEASILPQQAACAGISLTELFGSAIADA 324 >UniRef50_D0J9U3 D-alanyl-alanine synthetase A n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9U3_BLASP Length = 331 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 97/323 (30%), Positives = 158/323 (48%), Gaps = 32/323 (9%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD-----------------PKEV 45 KIA+++GG + E +SL SG V L + + Y + + Sbjct: 2 KKIAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIEKWILKDKNNKEYPVNKQ 61 Query: 46 D----VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 D +T + + F VF A+HG GEDG LQ L+ +PYTG ++++ +K Sbjct: 62 DFTVRITNDQILKFDCVFNAIHGTPGEDGVLQAYFHLLKIPYTGCHFHHASVTFNKKYCL 121 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN 161 + G+ AP L + + + +GLP VKP+R GSS+G+SKV E Sbjct: 122 TFLKEFGIKTAPSFFLNKNQSFCEK-----KILKKVGLPCFVKPNRSGSSLGISKVYQER 176 Query: 162 ALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYL 217 L A+ AF+ D+E+++E +L G E +V ++ ++LP I F+D+E+KY Sbjct: 177 ELAKAIEHAFRKDQEIIVESFLKGTEVSVGVISWNQDIKVLPITEIISRNDFFDFESKY- 235 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 S ++Q PA L S E ++ L + L G R + +L +G + LE NT PG+ Sbjct: 236 SGKSQEITPARLLPSLEKKIKKLAKNVYEILNLSGISRSEYIL-VNGDPFFLEINTIPGL 294 Query: 278 TSHSLVPMAARQAGMSFSQLVVR 300 + S++P + AG+S S+L + Sbjct: 295 SEESILPKQLKIAGISLSELFKK 317 >UniRef50_Q03CR5 D-alanine--D-alanine ligase n=11 Tax=Lactobacillaceae RepID=DDL_LACC3 Length = 357 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 56/348 (16%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-------------------- 42 KI VL GG S ER VS++SG + LR+ G A +D Sbjct: 1 MKIVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANT 60 Query: 43 -----------KEVDVTQLKSMG---------------FQKVFIALHGRGGEDGTLQGML 76 + D+ +L+ G VF+ALHG GE+G +Q + Sbjct: 61 SKDLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVF 120 Query: 77 ELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISA 136 ++ G+ YTGSG +AS ++M+K+ SK + G+ + + R + K Sbjct: 121 DINGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKRDQGPKQTVP-------- 172 Query: 137 LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE 196 PV+VKP+ GSSVG + + L+ L F+ D ++E++ G EF++ ++ Sbjct: 173 FDFPVVVKPTSGGSSVGTHIIHNQEELESGLEDVFRFDNSAIVEEFTPGREFSLGVVNGH 232 Query: 197 ILPSIRIQPSGTFYDYEAKYLSDETQYFCPA-GLEASQEANLQALVLKAWTTLGCKGWGR 255 +I I+ +YD++ K+ + T + P L+ ++ + ++ LG + +GR Sbjct: 233 AYSAIEIKVRSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGR 292 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 ID + G +++EAN PGMT SL+P A G+ + LV+ I+ Sbjct: 293 IDFFANEKG-VWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIVN 339 >UniRef50_B7IGP0 D-alanine--D-alanine ligase n=1 Tax=Thermosipho africanus TCF52B RepID=DDL_THEAB Length = 367 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 87/347 (25%), Positives = 162/347 (46%), Gaps = 52/347 (14%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV------------------ 45 + +L G S E E+S+ + VL+ + + + P+ + Sbjct: 3 NVGLLFGSKSVEHEISIITAHQVLSFVDKNKYNIIPIYITKDGKWLTGKILEDLENFKNL 62 Query: 46 ---------------------DVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 + +K + + HG GEDG++QGMLE + +PYT Sbjct: 63 ERLEKKSKQISSISAKDGKLILHSNIKKITIDVCLLTFHGSNGEDGSIQGMLEFLNVPYT 122 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 G G+ +S +MDK+ +KL+ + +PV ++ + + D L P+IVK Sbjct: 123 GCGMYSSMYTMDKVITKLILKEKNIPVVDFLYTNKKNYTN---DFLNHCKEVLEYPMIVK 179 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQ 204 P+R GSS+G+ KV + L++A+ AF D++V++EKW+ E A++G + + I+ Sbjct: 180 PARLGSSIGVKKVNDKCELEEAIETAFSFDDKVIVEKWIDSRELNCAVMGYKNIVVSEIE 239 Query: 205 P---SGTFYDYEAKYLSDE---TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDV 258 F+DY KY+ + + PA ++ + + ++++ + L C G RID Sbjct: 240 EIKKQKDFFDYNEKYVQKGKKFSNHIIPAPIDENLKNTIKSIARDTFNALECHGNIRIDF 299 Query: 259 MLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +L D + Y+ E N+ PG + S + +G +FSQ++ ++ +A Sbjct: 300 LLSKDNKIYVNEVNSIPG--ALSYY--LWQMSGFTFSQVIDNMISIA 342 >UniRef50_Q6JH79 D-alanine-D-serine ligase n=2 Tax=unclassified Erysipelotrichaceae RepID=Q6JH79_CLOIN Length = 355 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 165/351 (47%), Gaps = 48/351 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT------------- 48 K+A++LGG S E VSL+S +++ + + + + + Sbjct: 3 KIKLAIILGGKSDEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYSGDVDGIEHD 62 Query: 49 -----------------------------QLKSMGFQKVFIALHGRGGEDGTLQGMLELM 79 + +F LHG+ GEDGT+Q + EL Sbjct: 63 TWLCEAHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQTLFELS 122 Query: 80 GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGL 139 G+PY G G M A+ MDK + ++ + AG+ AP+V + A+ + A+ LGL Sbjct: 123 GIPYVGCGHMRFAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAK-ETLGL 181 Query: 140 PVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE--VLIEKWLSGPEFTVAILGEE- 196 P+ +KP+ GSS G+ ++ + + ++A++ AF HD + V++E + G E VA++G + Sbjct: 182 PIFIKPANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKE 241 Query: 197 --ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWG 254 I+ + F+DYE KY ++ +CPA + + + KA+ + CKG Sbjct: 242 LFAGSVDEIETAAPFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMT 301 Query: 255 RIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 R+D+ + + L E NT PG T S P ++AG+ F +L+ +++ LA Sbjct: 302 RVDMFVTPEDTIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352 >UniRef50_B1ZUU9 D-alanine--D-alanine ligase n=4 Tax=Verrucomicrobia RepID=B1ZUU9_OPITP Length = 311 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 149/301 (49%), Gaps = 8/301 (2%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 IAV GGTS+EREVSL SG A A L + + VF LHG Sbjct: 6 IAVFSGGTSSEREVSLGSGQACAAALEKS-FRVERFQIDADALPAGLDPQRHVVFSTLHG 64 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG +Q +L+ G+ Y G ++SAL+MDK +K G+ V P V Sbjct: 65 TFGEDGGMQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFP-----A 119 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 + I G V+VKP+ EGSSVG++ V + L L + + +IE+ + Sbjct: 120 AKKPRPEQVIEQFGERVVVKPNAEGSSVGLNLVGSREELTRVLDVI--QNGRWIIERRIF 177 Query: 185 GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 G E V +L + + I+P YDY +KY T Y PA L+A+ +QA A Sbjct: 178 GRELAVGVLNGRAMGVVEIRPKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQTA 237 Query: 245 WTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 + GC+ + R+D +L D + YLLE NT PGM SL+PM+AR G+ F+ LV ++ Sbjct: 238 FAACGCRDYARVDFILGDDHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAMVTP 297 Query: 305 A 305 A Sbjct: 298 A 298 >UniRef50_A8R862 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R862_9FIRM Length = 392 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 102/361 (28%), Positives = 158/361 (43%), Gaps = 63/361 (17%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------------- 45 M K+ V GG S E E+S+ S V+ + + P+ + Sbjct: 13 MRIKVVVAFGGESVEHEISILSAHQVMQAMNPMKYEVIPLYIAKDGRLLYHPLNTELERF 72 Query: 46 -DVTQLKSMG---------------------------FQKVFIALHGRGGEDGTLQGMLE 77 ++ +++ G F VF LHG GEDGT QG L Sbjct: 73 ENLDKVEREGYEVSLQRRGNRFYMCPNKYSFLRKEISFDMVFPILHGTHGEDGTFQGYLS 132 Query: 78 LMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISAL 137 + +PY G V+ A+ DK+ K + + +GLPVAPW T K L D + L Sbjct: 133 TLHIPYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWFYWT---LLKPLDDTFFRKAERL 189 Query: 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILGE- 195 G P+IVKP+ GSS+G++KV E L A+ A+Q+D V+IEK + E A+LG+ Sbjct: 190 GYPLIVKPANLGSSIGVAKVENEVELHRAMIEAYQYDGRVVIEKAIEHVQEINCAVLGDE 249 Query: 196 ---EILPSIRIQPSGTFYDYEAKYLSDE-------TQYFCPAGLEASQEANLQALVLKAW 245 E + S Y KY+ E T+ PA ++ +Q L + + Sbjct: 250 QTCEASVLEEVLSSKDILSYADKYVCGEGVKGIVNTRRCIPARIDEELALEIQTLAKECF 309 Query: 246 TTLGCKGWGRIDVMLDSDGQ-FYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 304 L G GRID + + + + Y+ E NT PG SL ++ + F +L+ R++++ Sbjct: 310 RCLCASGTGRIDFLYNRETKDLYINEINTIPG----SLAFYLWEKSNLPFPKLIDRLVQI 365 Query: 305 A 305 A Sbjct: 366 A 366 >UniRef50_Q03ZI1 D-alanine--D-alanine ligase n=17 Tax=Lactobacillales RepID=DDL_LEUMM Length = 377 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 156/350 (44%), Gaps = 51/350 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGG--------------------------- 34 ++A++ GG S+E +VS S + G Sbjct: 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILAL 62 Query: 35 ------IDAYPVDPKEVD----VTQLKSMG-FQKVFIALHGRGGEDGTLQGMLELMGLPY 83 +DA+ D + LKS G F F +HG GEDGTLQG+ +L+ PY Sbjct: 63 EDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPY 122 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 G+ + A+S DK +K L G+ ++ + DK +AE+ + V V Sbjct: 123 VGAPLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNI---VFV 179 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILGEEILPSIR 202 K + +GSSVG+S+V +AL +FQ+D +VLIE+ ++G E V ++G + Sbjct: 180 KAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSE 239 Query: 203 IQ--------PSGTFYDYEAKYLSDETQYF-CPAGLEASQEANLQALVLKAWTTLGCKGW 253 I +YDY K++ + +F PA L ++ + L A+ L +G Sbjct: 240 IGAHTVPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGE 299 Query: 254 GRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 R+D +LD + YL E NT PG T+ SL + ++ ++LV +++ Sbjct: 300 ARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349 >UniRef50_D1ASV0 D-alanine--D-alanine ligase n=1 Tax=Anaplasma centrale str. Israel RepID=D1ASV0_ANACI Length = 336 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 151/303 (49%), Gaps = 10/303 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 IAVL GG+S EREVSL G + L G A VD QL +M V+ ALHG Sbjct: 15 IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG G+L+++GL YT S V AS++ MDK+ +K + + G+ + LT+ E Sbjct: 75 GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEE--- 131 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 L+ + P ++KP GS++G+ + + + D A + +L+E+++ Sbjct: 132 -----VLSAKEVMPYPFVIKPICGGSTIGVHAIFSRSEYLDLSVHADALEGRMLVEEYIP 186 Query: 185 GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 G E A+ + ++ G Y Y+AKY+ ++ PA L + +K Sbjct: 187 GQEVHTAVFLGRAIGTMEFLFEGRVYGYDAKYVEGLCRHVFPANLSDDVYSLTMEWAVKL 246 Query: 245 WTTLGCKGWGRIDVMLDSDGQ-FYLLEANTSPGMTSHSLVP-MAARQAGMSFSQLVVRIL 302 + LGC+ R+D D + LLE NT PGMT+ S +P + + G+ F Q+V I+ Sbjct: 247 YQCLGCRTVSRVDFRYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIV 306 Query: 303 ELA 305 + A Sbjct: 307 KDA 309 >UniRef50_B7AVY8 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AVY8_9BACE Length = 398 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 155/366 (42%), Gaps = 66/366 (18%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-------------- 46 M ++A++ GG S E EVS+ SG + D PV + + Sbjct: 6 MKTRVAMMFGGKSVEHEVSVISGIQAYMSMDTDKYDVIPVYMTKNNEMYIGDSIGDIESY 65 Query: 47 -------------------------------VTQLKSMGFQKVFIALHGRGGEDGTLQGM 75 + + +G F +HG EDG QG Sbjct: 66 KNIDELLKKSQRVIMINEDGRVKLVQYPVKKLGKNVEVGIDVAFPVVHGTNVEDGGFQGY 125 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 L+ MG+P+ G V ASA+ MDK +KL+ + + +PV T +++ + + Sbjct: 126 LKTMGIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDARLYTLSDYAD-MESMMNDIEN 184 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILG 194 G PVIVKP GSSVG+S + L +++ AF++ +VL+E ++ E ++LG Sbjct: 185 VFGYPVIVKPVNLGSSVGISVAKSRVELANSVDDAFRYATKVLVEHAITNLREINCSVLG 244 Query: 195 EE----ILPSIRIQPSGTFYDYEAKYLSD----------ETQYFCPAGLEASQEANLQAL 240 +E + YE KY+S+ PA L + ++ L Sbjct: 245 DENDAIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMASVSRRIPAELTPEKREEVREL 304 Query: 241 VLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 ++++ LGC G RID M+D+D + Y E NT PG SL G+ + +L+ Sbjct: 305 AVRSFKALGCNGVSRIDFMIDADTDKLYFNEINTIPG----SLAFYLWEPVGVPYKELLD 360 Query: 300 RILELA 305 R+++LA Sbjct: 361 RMIQLA 366 >UniRef50_B9KHS3 D-alanine--D-alanine ligase n=5 Tax=Anaplasma marginale RepID=DDL_ANAMF Length = 334 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 154/303 (50%), Gaps = 10/303 (3%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 +AVL GG+S EREVSL G V L G +A +D V QL +M V+ ALHG Sbjct: 14 VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG + G+L+++GL T S V AS++ MDK+ +K + + G+ + LT+ E Sbjct: 74 VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEE--- 130 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 L+ L P ++KP R GS++G+ + +++ D A ++ +++E+++S Sbjct: 131 -----LLSAKEVLPYPFVIKPVRGGSTIGVHAIFSKSEYLDLSAHADTLEDRMIVEEYVS 185 Query: 185 GPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKA 244 G E A+ + ++ + G Y Y+AKY+ ++ PA L LK Sbjct: 186 GQEVQTAVFLGRAIGTMELLFEGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKL 245 Query: 245 WTTLGCKGWGRIDVMLDSDGQ-FYLLEANTSPGMTSHSLVPM-AARQAGMSFSQLVVRIL 302 LGCK R+D D + LLE NT PGMT S +P + G++F +V I+ Sbjct: 246 HQCLGCKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIV 305 Query: 303 ELA 305 + A Sbjct: 306 QDA 308 >UniRef50_Q5LI31 D-alanine--D-alanine ligase n=17 Tax=root RepID=DDL_BACFN Length = 324 Score = 296 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 89/327 (27%), Positives = 152/327 (46%), Gaps = 30/327 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGI------------DAYPVDPKEVDVT 48 M IA++ GG ++E VSL S + + + + + D + V Sbjct: 1 MKRNIAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLQDGSKTPVD 60 Query: 49 Q--------LKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRS 100 + + + F +I +HG GEDG LQG +++ +PY+ GV+A+A++ DK Sbjct: 61 RNDFSFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMIRIPYSCCGVLAAAITYDKFVC 120 Query: 101 KLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE 160 + G+ ++ + L + + + +GLP +KP+ GSS G++KV Sbjct: 121 NQYLKAFGVRISESLLLRQGQAVSDED-----VVEKIGLPCFIKPNLGGSSFGVTKVKTR 175 Query: 161 NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKY 216 +Q A+ AF EEV+IE ++ G E T + + P + F+DY+AKY Sbjct: 176 EQIQPAIAKAFSEAEEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKY 235 Query: 217 LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG 276 + + PA + +Q L + LGC G R+D ++ + LLE NT+PG Sbjct: 236 -NGQVDEITPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITEGEKINLLEVNTTPG 294 Query: 277 MTSHSLVPMAARQAGMSFSQLVVRILE 303 MT+ S +P R AG+ ++ I+E Sbjct: 295 MTATSFIPQQVRAAGLDIKDVMTDIIE 321 >UniRef50_B5GNT9 D-alanine-D-alanine ligase n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GNT9_STRCL Length = 312 Score = 296 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 161/310 (51%), Gaps = 11/310 (3%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 MT ++A+L GG S E + S S A LRE G + VD D + + F+ FI Sbjct: 1 MTMRVAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFWK-RLPDFEAAFI 59 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 A HG EDG LQG+LE+MGLPYTGSGV+AS++ M K K L G+ PW ++R Sbjct: 60 AGHGWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRG 119 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQH-DEEVLI 179 + + + +GLP+ KP+ G S V ++ L++ L ++ +E + Sbjct: 120 ----ATAAQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYSSDEFIA 175 Query: 180 EKWLSGPEFTVAILG----EEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E +L+G FTV +L E LP + FYD EAK +Y CPA + S Sbjct: 176 EPFLTGNTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRD 235 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 +Q L ++ +T GC+G R+D ML D + +LE NT PG+T + A+ +G+ + Sbjct: 236 RMQELAVRVFTVCGCRGVARVDFMLSED-RPVVLEVNTVPGLTLQGNLAAMAKASGLGYR 294 Query: 296 QLVVRILELA 305 ++V +L+ A Sbjct: 295 RVVEIMLQSA 304 >UniRef50_D1AUY0 D-alanine/D-alanine ligase n=3 Tax=Fusobacteriaceae RepID=D1AUY0_STRM9 Length = 299 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 171/306 (55%), Gaps = 12/306 (3%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-KEVDVTQLKSMGFQKVFIA 61 +I V+ GG S EREVS+N+G ++A L + + ++ K+ D+ ++ + +IA Sbjct: 1 MRIGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKKEDIFKVVDLNLDFAYIA 60 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GE G +Q +LE G+ Y+GSG+++SA+ MDK +K+L + +G+ + + + E Sbjct: 61 LHGEFGESGDVQAILETAGIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGE 120 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHD-EEVLIE 180 LG +I+KP+R GSS+G+ + L+ L F+ EVLIE Sbjct: 121 -------NIKFSDLNLGEKIILKPNRGGSSIGVYFATNDEELEYGLNEIFKLGENEVLIE 173 Query: 181 KWLSGPEFTVAILGEEILPSIRIQP-SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 + SG E +V I+ ++ P++ I+P TF+DY +KY + + + E S + + Sbjct: 174 EMKSGIEISVPIIAGKVFPTLLIEPLKDTFFDYTSKYENGGAKEYV-YFFEESLQNEIND 232 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 +KA+ + CKG+ RID +L D + Y LE NT PGMT +SL+P + G S+S+ + Sbjct: 233 FTIKAYNAVKCKGFARIDYIL-VDNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLD 291 Query: 300 RILELA 305 +++ + Sbjct: 292 LLIKES 297 >UniRef50_A9WQG6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=A9WQG6_RENSM Length = 365 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 113/328 (34%), Positives = 160/328 (48%), Gaps = 24/328 (7%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL----------- 50 IAV+ GG S+E +VSL S A G + + Sbjct: 33 AKTIAVIGGGVSSEHDVSLASSEGTRAAAAALGHRVHFFLIDSDGEWSVDGVPGTTAAWE 92 Query: 51 KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLP 110 K +HG GGEDG LQG LE +G+ Y GSGV++SA+ +DK +KL+ G+ Sbjct: 93 KLRSCDLAIPMVHGAGGEDGVLQGFLETVGVSYFGSGVLSSAVGLDKQVTKLVAHTVGVR 152 Query: 111 VAPWVA----LTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDA 166 AP + L E + L + + + LPV VKP R GSS G+SKV + L DA Sbjct: 153 TAPGLTIDATLRDQLAETPDQAENLLKSAKIELPVFVKPLRGGSSFGISKVTEQLNLADA 212 Query: 167 LRLAFQH--DEEVLIEKWLSGPEFTVAILGEE-----ILPSIRIQ--PSGTFYDYEAKYL 217 ++LA +++VLIE + G E V +L + P +++ F+ EAKY Sbjct: 213 VKLAAHGPVEQDVLIEPEVRGKEVDVGVLELPDCSVIVGPCLQVLADSKEEFFSTEAKYS 272 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 S ET++ PA + A ++A +T LGC+G R+D +D DG L E NT PG Sbjct: 273 STETRFLVPAPIGDEASAAIRAQAKAVFTALGCRGLARVDFFVDDDGTATLNEINTLPGF 332 Query: 278 TSHSLVPMAARQAGMSFSQLVVRILELA 305 TSHS VP AG+++ LV I+E A Sbjct: 333 TSHSQVPRIWAAAGVNYEGLVAIIIETA 360 >UniRef50_Q04G13 D-alanine--D-alanine ligase n=11 Tax=Leuconostocaceae RepID=DDL_OENOB Length = 377 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 170/348 (48%), Gaps = 47/348 (13%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYP---------------------V 40 ++ + GG S+E +VS S L +P Sbjct: 4 KIRVGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIMIDSETSKRVLFGE 63 Query: 41 DPKEVD-------------VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSG 87 D E+ + ++++ +F ++HG GEDGTL G+ LM +PY GSG Sbjct: 64 DEDELLAGLPNKNADIFGPIDSIRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSG 123 Query: 88 VMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSR 147 + A A+S DK+ +K L G+ ++ + + + K D + LG V VK + Sbjct: 124 LRAHAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWD---SVSKQLGEVVFVKAAN 180 Query: 148 EGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS-GPEFTVAILGEEILPSIRIQ-- 204 +GSSVG+S+V ++ALR +FQ+DE++L+EK + E + +LG + + + I Sbjct: 181 QGSSVGVSRVTNAEEYENALRDSFQYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAH 240 Query: 205 ------PSGTFYDYEAKYLSDET-QYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 ++DY+ K++ + +Y PA + ++ L+ + +KA+ LG KG+ RID Sbjct: 241 WAPGQDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARID 300 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 ++ DG+ +L E NT PG T+ SL P+ AGM+ SQ ++++LA Sbjct: 301 FLMSKDGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLA 348 >UniRef50_D1VT22 D-alanine--D-alanine ligase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT22_9FIRM Length = 390 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 98/366 (26%), Positives = 155/366 (42%), Gaps = 71/366 (19%) Query: 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV----------DVTQLKSM 53 +AV+ GG S E EVS+ +G V+ L + + P+ + D K Sbjct: 3 NVAVVFGGISVEHEVSVITGLQVIENLDKEQFNPIPIYISKEGRFYSGEMLKDFKTYKEG 62 Query: 54 G----------------------------------------FQKVFIALHGRGGEDGTLQ 73 +F ALHG GEDG +Q Sbjct: 63 KYREATEVFIIPQKGDRFLYSTKVVGGIFKKTHTENYIYARIDAIFPALHGTFGEDGAIQ 122 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 G+ E M +PY G GV+A A MDK+ K +++ +PV + R+E + S L + Sbjct: 123 GLFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYFYRSELKDLQS--VLKK 180 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL-SGPEFTVAI 192 LG P+IVKP+ GSS+G+SKV L AL +A +D+++++EK L E VA+ Sbjct: 181 CEKLGYPLIVKPANLGSSIGISKVKDTLELTKALEVASNYDKKIIVEKCLTDHREINVAV 240 Query: 193 LGE----EILPSIRIQPSGTFYDYEAKYLS---------DETQYFCPAGLEASQEANLQA 239 LG+ ++ + Y KY+ + + PA L + Sbjct: 241 LGDQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQKKKLPADLSKEVHNKICQ 300 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 L +++ + G RID +L + + Y+ E NT PG S+ G+SF L+ Sbjct: 301 LAKESFKAIDATGVSRIDFLL-KNDEVYVNEINTLPG----SIAFYLFEVEGLSFKDLLT 355 Query: 300 RILELA 305 ++LE+A Sbjct: 356 KLLEIA 361 >UniRef50_C2M9D0 D-ala D-ala ligase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9D0_9PORP Length = 329 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 101/326 (30%), Positives = 154/326 (47%), Gaps = 25/326 (7%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDP-----------------KE 44 IA++ GG S E EVS S +L + + Y V Sbjct: 3 KPNIAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADAWSVTDATGREGTIDR 62 Query: 45 VDVTQL--KSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL 102 V + + + F +I +HG GE+G LQG L+++G+PYT GV+ AL+ +K Sbjct: 63 ALVARFGAEEVTFAVAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNA 122 Query: 103 LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA 162 GL +A L E ++Q S L LP+ VKP+ GSS+ +++ + Sbjct: 123 YLAHHGLRIARSQRLHNQTKE-LSPEEQQQIESTLRLPLFVKPNTGGSSIATTRIEQWDQ 181 Query: 163 LQDALRLAFQHDEEVLIEKWLSGPEFTVA--ILGEEI--LPSIRIQPSGTFYDYEAKYLS 218 L A+ A+ +VL+E+ + G E T IL +E LP + TF+DY+AKY Sbjct: 182 LATAVVDAYTAAPDVLVEECIVGTEVTCGCVILPDEAFALPVTEVVAHDTFFDYDAKY-Y 240 Query: 219 DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMT 278 ++ PA + +Q L L C G+ RID ++++DG LLE NT+PGMT Sbjct: 241 GKSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDFIIEADGIPTLLEVNTTPGMT 300 Query: 279 SHSLVPMAARQAGMSFSQLVVRILEL 304 S +P R AG+ S L+ RI++ Sbjct: 301 EASFIPQQVRAAGLQLSDLITRIIKS 326 >UniRef50_Q8RDQ4 D-alanine--D-alanine ligase n=10 Tax=Fusobacterium RepID=DDL_FUSNN Length = 287 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 158/304 (51%), Gaps = 22/304 (7%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD-VTQLKSMGFQKVFIA 61 +IAV +GGTS+E+E+SL SG AVL L++ G DAY V E + V+ + ++ Sbjct: 1 MRIAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLV 60 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG GE+G +Q +L+++G YTGSGV+ASA++MDK ++K + Q G+ Sbjct: 61 LHGGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTKQIAQSVGIKTPKSY------ 114 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEK 181 PVI+KP EGSS G+ + ++A++ + +IE Sbjct: 115 ---------RPVEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA----KPIIED 161 Query: 182 WLSGPEFTVAILGEEILPSIRIQPSGTF-YDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 ++ G E TV +L E L ++I P YDY++KY + + PA +E + Sbjct: 162 YIIGEELTVGVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKI 221 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 K + G KG R D +L S+G+ Y LE N+SPGMT SL+P A G SF +V Sbjct: 222 AEKIHSEFGMKGISRSDFIL-SEGELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRI 280 Query: 301 ILEL 304 +E Sbjct: 281 TVET 284 >UniRef50_C1YHT6 D-alanine--D-alanine ligase n=2 Tax=Actinomycetales RepID=C1YHT6_NOCDA Length = 374 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 105/362 (29%), Positives = 162/362 (44%), Gaps = 60/362 (16%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGF------ 55 ++AV+ GG S+E E+S + +VL+ + + PV L S Sbjct: 7 KIRVAVVFGGRSSEHEISCVTAGSVLSVVDHDRYEIVPVGITRTGNWVLTSGDPESLRID 66 Query: 56 -----------------------------------------QKVFIALHGRGGEDGTLQG 74 V LHG GEDGT+QG Sbjct: 67 AGTRALPSVSEDGVDLALPFDSAGQLMVVDPVKGPERLAGVDVVLPLLHGPFGEDGTIQG 126 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 + E+MG+ Y G+GV +S+ SMDK+ K + +G G+P + +VA+T ++ + + L ++ Sbjct: 127 LFEMMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFVAITDRQW-RTERKRVLDDV 185 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLA---FQHDEEVLIEKWLSGPEFTVA 191 + LG V VKP+R GSSVG+SKV + + +HD +VL+E + G E Sbjct: 186 AELGATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREHDPKVLVEAQVVGREVECG 245 Query: 192 ILGEEILPS--------IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLK 243 +L E + + + FYD+EAKYLS + PA L A L+AL + Sbjct: 246 VLESEDGGTPDVSLPAEVHVADGFDFYDFEAKYLSTSS-LTIPAELPEEATARLRALAAE 304 Query: 244 AWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 + +GC+G R+D DG + E NT PG T S P G+ ++ LV R++ Sbjct: 305 VFEAMGCEGLARVDFFYTEDGDILVNELNTMPGFTPASAFPQMWAATGVDYAALVERMIS 364 Query: 304 LA 305 A Sbjct: 365 TA 366 >UniRef50_Q60GK8 D-alanyl-D-alanine ligase n=2 Tax=Streptomyces RepID=Q60GK8_STRLA Length = 345 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 109/347 (31%), Positives = 158/347 (45%), Gaps = 48/347 (13%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK------------------- 43 +I +L GG S ER+VSL SG++V L E G + VDP Sbjct: 1 MRIVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAGEPVLAGPLHPGDVVDGF 60 Query: 44 -----------EVDVTQLKSMGFQ------------KVFIALHGRGGEDGTLQGMLELMG 80 + Q + F VF ALHG GEDG +Q LE G Sbjct: 61 EVGKEPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAAG 120 Query: 81 LPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLP 140 + +TG+G A A + +K R++ + AG+PV A E + L P Sbjct: 121 VRFTGAGSTACAAAWNKERAQAVLAAAGVPVTERALWPAAADEVPKEVRPLVAAG----P 176 Query: 141 VIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPS 200 V+ KP +GSSV + + + L+ ++L+E +LSG EFTV ++G ++LP Sbjct: 177 VVAKPVADGSSVSVHRADSLAELERLAPQMRADGGDLLVEPFLSGREFTVGVVGGQVLPV 236 Query: 201 IRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGC--KGWGRIDV 258 I I+ S +DY AKY CPA + + LQ L L+A LG + R D Sbjct: 237 IEIELSTPLFDYAAKYQPGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYSRADF 296 Query: 259 MLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 D+ G+ LE N PG+T+ SL+P+ A AG +++ L RI+ LA Sbjct: 297 RCDAAGEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLA 343 >UniRef50_D0RN14 D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) n=2 Tax=Bacteria RepID=D0RN14_9RICK Length = 305 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 100/312 (32%), Positives = 163/312 (52%), Gaps = 20/312 (6%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIA 61 KI +L+GG S ER VS++SG A +++ G + Y DP + +K + VF Sbjct: 4 KKKILILMGGRSKERSVSIDSGKACYQAIKKIGYEVYKYDPIKNIKNNIKKINPDIVFNC 63 Query: 62 LHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAE 121 LHG+ GEDG +Q +LE + +PYT SGV AS ++MDK++SK ++ + + + + Sbjct: 64 LHGKYGEDGKIQKILEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFKIIKKIS 123 Query: 122 FEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKV------VAENALQDALRLAFQHDE 175 K K I+KP EGSS+G+ ++ ++ + Sbjct: 124 DIKNKISKSK---------FILKPINEGSSLGVQIFPEYPTSKNFKKIKKLIKKYKILIQ 174 Query: 176 EVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKY-LSDETQYFCPAGLEASQE 234 E ++ G E A+LG + + S+ I P FYDY+AKY LS +T++ P + + Sbjct: 175 ----EPYIEGREIQTAVLGNKAIGSVEIIPKRNFYDYKAKYSLSAKTKHIIPPKIPKRLD 230 Query: 235 ANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSF 294 ++ + L A +L C+G R D + + + Y+LE NT PGMT+ SLVP A+ G+SF Sbjct: 231 NKIKRIALIAHKSLKCRGVTRSDFRVMPNNKIYILEINTQPGMTNLSLVPEIAQNFGLSF 290 Query: 295 SQLVVRILELAD 306 ++LV +++ A Sbjct: 291 TELVDWMIKDAS 302 >UniRef50_UPI0001AECDB6 D-alanine--D-alanine ligase n=1 Tax=Streptomyces roseosporus NRRL 15998 RepID=UPI0001AECDB6 Length = 320 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 147/306 (48%), Gaps = 9/306 (2%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 + VL GG S ER SL SG L G + +D E + IALHG Sbjct: 11 VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLIDTAEPQAIESIQ-KIDVALIALHG 69 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GGEDG +QG+LE++G+PYTGSGV+ASA+ M K K L GL W+ L + Sbjct: 70 PGGEDGKIQGLLEILGVPYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPS---L 126 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDE-EVLIEKWL 183 + S +G PV +KPS G S+G + + L + D E L+E+++ Sbjct: 127 TSDEMSKVVESHVGWPVFIKPSAGGGSLGAGIGRSPSDFAHMLADLNRQDYLEYLVEEYV 186 Query: 184 SGPEFTVAILGE----EILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 G +V ++ E LP ++ FYDY AK+ + CP+ L LQ Sbjct: 187 PGRPCSVGVIETSGRPEALPVHDVETDREFYDYAAKHDPSKRIENCPSILPKDVTERLQE 246 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 ++ G G R+D ++D +G+ +LE NT PG++ + A+ AGMS+ LV Sbjct: 247 EAVRIHMLTGAHGVSRVDFIVDDNGRSVILEINTVPGLSDMGNLATMAKAAGMSYPALVT 306 Query: 300 RILELA 305 +L+ A Sbjct: 307 AVLKTA 312 >UniRef50_B1JC77 D-alanine--D-alanine ligase n=2 Tax=Pseudomonas putida RepID=B1JC77_PSEPW Length = 304 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 156/304 (51%), Gaps = 12/304 (3%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLR--EGGIDAYPVDPKEVDVTQLKSMGFQKV 58 M + IA++ GG S+EREVSL + AV L + + + + + +L F +V Sbjct: 1 MNEYIAIITGGDSSEREVSLQTSQAVSQSLEISQIRHEIFTISDYRELL-RLDLAKFTRV 59 Query: 59 FIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALT 118 F+ALHG GE+G Q LE G+PY G SA+ M+KL +K + G G+ VA ++ Sbjct: 60 FLALHGGFGENGMAQAYLEGQGIPYNGPSPQTSAICMNKLLTKHIAMGLGINVANYLYSR 119 Query: 119 RAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN-ALQDALRLAFQHDEEV 177 R + LG P IVKP+REG S G+S V LQDA+ A Q V Sbjct: 120 RGDDLC-----VEKINEQLGTPCIVKPNREGCSFGVSLVRDLETDLQDAINAAAQFHTGV 174 Query: 178 LIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANL 237 L+E+++SGPE +V + LP + F+ YEAK++S +T L+ + L Sbjct: 175 LVEEFISGPELSVCYFNKATLPIYSLAFESEFFSYEAKFISSKTTATL-TTLDRTTHQQL 233 Query: 238 QALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQL 297 L + R D ++ + + YL+E NT PG+TSHSL P A +Q G+ F +L Sbjct: 234 NNYCFAIAEALEL-DYFRADFII-HNTEPYLIELNTLPGLTSHSLFPKACQQHGIEFDKL 291 Query: 298 VVRI 301 V+ + Sbjct: 292 VLLL 295 >UniRef50_Q872P6 Predicted protein n=2 Tax=Sordariaceae RepID=Q872P6_NEUCR Length = 346 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 98/339 (28%), Positives = 158/339 (46%), Gaps = 39/339 (11%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY----------------------P 39 IA+++GG S E +VS+++G A+ A + + Y P Sbjct: 6 KKNIAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDNDKQIP 65 Query: 40 VDPKEVD--VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK 97 VD + ++ + + F +I++HG GE+G LQG +++GLPYT G SAL+ +K Sbjct: 66 VDRNDFSVTLSTGEKIQFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYTSALTANK 125 Query: 98 LRSKLLWQGAG-LPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSK 156 + + G + VA L R + + L E LPV VKP+ GSSV +K Sbjct: 126 GHCNPVVRSFGVVEVAKSRLLHRNQISALDPEALLFE---FDLPVFVKPASGGSSVATTK 182 Query: 157 VVAENALQDALRLAFQHD--EEVLIEKWLSGPEFTVAILGE-----EILPSIRIQPSGTF 209 V + + A+ A + D +VL+E+++ G EF ++ + + P + P G Sbjct: 183 VKSIEQVVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRDAEGWLHVFPITEVIPHGDS 242 Query: 210 --YDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQF 266 +DY AKY + + PA +E ++ + L C+G R D + + Sbjct: 243 EYFDYNAKY-NGSSSKVTPAEVETQVSDRIKDTSTMLYDLLDCRGVVRFDYRYNPELYAL 301 Query: 267 YLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 Y LE NT PG T S+VP AR AG+S + L ++E A Sbjct: 302 YFLEVNTIPGQTPESIVPQQARAAGISTADLYHMVIECA 340 >UniRef50_Q821S4 D-alanine--D-alanine ligase n=15 Tax=Chlamydiaceae RepID=MUDD_CHLCV Length = 811 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 93/335 (27%), Positives = 136/335 (40%), Gaps = 35/335 (10%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT------------- 48 + V+ GG S E +VSL S V+ L D + Sbjct: 451 KLSVGVVCGGQSCEHDVSLLSARNVVQYLSPQHYDVQYFVINRQGLWSQVANLDAGSDYN 510 Query: 49 -----------QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDK 97 V LHG GEDGTLQG LE+ PY G ++ SA+SMDK Sbjct: 511 SKNYHVLSSKIAEALANLDFVLPILHGPFGEDGTLQGFLEIANKPYGGPSLLFSAISMDK 570 Query: 98 LRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKV 157 + +K L G+PV P+ LT +++ + P+ VK + GSS+G+ +V Sbjct: 571 IMTKRLAASVGVPVVPYQPLTLPTWKRTPELCMRRILETFTFPMFVKTAHLGSSIGVFEV 630 Query: 158 VAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAILGEEILPSIRIQPSGT------FY 210 E L+ + AF +D +V IE+ G E V+ LG+ I F Sbjct: 631 HNETELKAKISEAFLYDTDVFIEESRLGSREIEVSCLGD-ACSCYYISEPHERRGSKGFI 689 Query: 211 DYEAKY---LSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFY 267 YE KY L + ++ L + + + KG RID LD +G F+ Sbjct: 690 GYEEKYGFNGKSSATIQYDLNLSEESKTRVKELTERVYRVIQGKGSCRIDFFLDREGNFW 749 Query: 268 LLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRIL 302 L E N PGMT S + G +F Q+V +++ Sbjct: 750 LSEMNPIPGMTKSSPFLHDFARLGWTFEQIVHQLI 784 >UniRef50_A6LKA2 D-alanine--D-alanine ligase n=1 Tax=Thermosipho melanesiensis BI429 RepID=DDL_THEM4 Length = 361 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 86/346 (24%), Positives = 154/346 (44%), Gaps = 56/346 (16%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV----------------D 46 I + G S E E+S+ + VL+ + + P+ + D Sbjct: 2 LNIGIFFGSKSVEHEISIITAQQVLSSIDRKKYNVIPIYISKSGEWFTGKVLEDLETFKD 61 Query: 47 VTQLKSMG-----------------------FQKVFIALHGRGGEDGTLQGMLELMGLPY 83 +L+ F+ HG GEDGT QGM E+ G+PY Sbjct: 62 FDKLEKKAKKIDSFSVKNNKLLLKYGLKKQTIDFCFLVFHGTNGEDGTFQGMCEIFGIPY 121 Query: 84 TGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIV 143 +G +SA +MDK+ +KLL + + V + T + + LG P+IV Sbjct: 122 SGCNHFSSAFTMDKVVTKLLLKEKEISVVDFEYTT-----EINEEFFKRCEKNLGYPMIV 176 Query: 144 KPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRI 203 KP+R GSS+G+SKVV ++A++ D +VL+EKW++ E A++G + + + Sbjct: 177 KPARLGSSIGVSKVVDRKNFEEAVKNVLLFDNKVLVEKWINAREINCAVMGYKNIFVSEL 236 Query: 204 QP---SGTFYDYEAKYLSDE---TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRID 257 + F+++E KY + + PA ++ + + ++ + + L C G RID Sbjct: 237 EEINKKNDFFNFEEKYFKKGKKFSNHIIPARIDENLKNKIKEIAKDTFKILECSGNVRID 296 Query: 258 VMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 ++ + Y+ E NT PG +L +++G +FSQ++ ++ Sbjct: 297 FLI--ADKIYVNEINTIPG----ALSFYIWQKSGFTFSQIIDNMIN 336 >UniRef50_Q83G28 D-alanine--D-alanine ligase n=2 Tax=Tropheryma whipplei RepID=DDL_TROWT Length = 347 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 150/346 (43%), Gaps = 49/346 (14%) Query: 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREG-----------GIDAYPVDPKEVDVTQLK 51 ++ +L GG S E VS S A+L + + G Y E D ++ Sbjct: 2 RRLLLLFGGRSQEHSVSYASARALLEHICDEWTVIPVGITKHGDFVYCSTVSEQDYGEVI 61 Query: 52 SMG---------------------------FQKVFIALHGRGGEDGTLQGMLELMGLPYT 84 G F VF LHG GEDGT+QGML+L+ +PY Sbjct: 62 DNGNRVVWPSRAGCKKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLDIPYV 121 Query: 85 GSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVK 144 GSGV ASA +MDK +K+L AG+PV PW + + K P+ VK Sbjct: 122 GSGVFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSFLKQISDRFTFPLFVK 181 Query: 145 PSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE-ILPSIRI 203 P GSS G + V L A+ A QH + ++E L PE +++ +L + Sbjct: 182 PVDAGSSFGCTFVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIENNGVLQCSEL 241 Query: 204 QP----SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVM 259 FYDY AKYL+ ++ PA + + K + LGC+ + RID Sbjct: 242 VFVKHSGSKFYDYSAKYLNP-VEFVIPAQFDN--TDGYAEIASKVFFELGCRHYARIDFF 298 Query: 260 LDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 + G L E NTSPG+T S+ P + + M +SQ++ IL A Sbjct: 299 VTESG-LVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASA 341 >UniRef50_C5C6M9 D-alanine--D-alanine ligase n=4 Tax=Actinomycetales RepID=C5C6M9_BEUC1 Length = 313 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 161/310 (51%), Gaps = 5/310 (1%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 M+ + VL GG S ER+VSL SG V LR+ G+ A D + L V+ Sbjct: 1 MSFDVLVLAGGLSHERDVSLRSGRRVAEALRDAGVSAAVRDVDADLLAYLDDARPDVVWP 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 LHG GEDG+++ +LEL+G+ G+G S ++ K +K + AG+ L ++ Sbjct: 61 LLHGSTGEDGSIRDLLELVGVRAVGTGSAGSRIAWAKPVAKTVLARAGVATPASATLPQS 120 Query: 121 EF-EKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLI 179 F E G + LGLP++VKP+ GS++G+S V + AL A+ F + + LI Sbjct: 121 LFRELGPHAVLGRVLDRLGLPLVVKPASGGSALGVSLVTSAEALPQAMVSCFSYGDVALI 180 Query: 180 EKWLSGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEA 235 E+ ++G E V+++ G LP + I YD++A+Y + T+YF PA L A A Sbjct: 181 EQAVTGTEVAVSVVDLGDGPVALPPVEIVVDDGPYDFDARYNAGRTEYFTPARLPADHLA 240 Query: 236 NLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFS 295 A+ ++A L + R D+++D G + LE N +PGMT SL P+AA + Sbjct: 241 AACAVAVRAHDVLRLRHLSRTDLVVDGYGVAWFLEVNVAPGMTETSLFPLAAAASPTPLP 300 Query: 296 QLVVRILELA 305 +L + ++A Sbjct: 301 ELYRGLADVA 310 >UniRef50_C0BG03 D-alanine--D-alanine ligase n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BG03_9BACT Length = 328 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 89/325 (27%), Positives = 147/325 (45%), Gaps = 31/325 (9%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMG------- 54 K+ V+ GG ++E ++SL SG V L + + + + G Sbjct: 4 KKKLGVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITINSNEWVANDDNGNHYSVSK 63 Query: 55 -------------FQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 +F ++HG GE+G L + EL+ +P++ SAL+ +K Sbjct: 64 GDFTLQIGNDIVFLDVIFNSIHGAPGENGQLAALWELLNIPFSSCDSYTSALTYNKRDCL 123 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN 161 + + +P A ++ R + A+G P VK +R GSS G+ KV ++ Sbjct: 124 SVLREINIPTAKHFSIDRNDKID-----LEKIEKAVGFPCFVKANRAGSSFGVFKVKKKS 178 Query: 162 ALQDALRLAFQHDEEVLIEKWLSGPEFTVAIL---GE-EILPSIRIQPSGTFYDYEAKYL 217 L+ AL+ AFQ D +V+IE L G E +V + G+ ++LP I F+DY AKY Sbjct: 179 NLEQALQKAFQEDSQVIIESALEGREVSVGVAKLRGDIKVLPVTEIITENEFFDYAAKY- 237 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGM 277 ++Q PA + + ++ + + LG KG R + + DG +LLE NT PG Sbjct: 238 EGKSQEITPAQIPIEWKEEVEKRSKEIYHKLGLKGVVRSEFIF-VDGVPHLLEINTVPGF 296 Query: 278 TSHSLVPMAARQAGMSFSQLVVRIL 302 T S++P A G+ S+ +L Sbjct: 297 TQKSIIPQQALAMGIELSEFFNLLL 321 >UniRef50_A1SQZ6 D-alanine--D-alanine ligase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SQZ6_PSYIN Length = 380 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 93/354 (26%), Positives = 155/354 (43%), Gaps = 53/354 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV---------------- 45 K+AV+ GG S E +VS+ S +LA + P K+ Sbjct: 5 RMKVAVVFGGKSTEHDVSIISAGHILANIDMEKYFVEPFYVKKDGTFADHQELTLCLENL 64 Query: 46 ------------------------------DVTQLKSMGFQKVFIALHGRGGEDGTLQGM 75 + + F VF LHG GEDGT+QGM Sbjct: 65 LNEHRDKIFPAMKEGEIELKKWIAKGTSSDFLGGIAGKKFDIVFPVLHGLNGEDGTIQGM 124 Query: 76 LELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEIS 135 LE MG+PY G GV ASA +DK +K++ Q +PV + A+ + E+E + Sbjct: 125 LEFMGVPYVGCGVSASAFCIDKEATKVICQVNDIPVMDYTAVKKYEWENSTENIINDIQK 184 Query: 136 ALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS-GPEFTVAILG 194 + P VKP+R GSS+G+S+ L+ +L+ AF++D +V++E+ + E TV ++G Sbjct: 185 KMNYPFYVKPARLGSSIGISRAENTVELKTSLKDAFKYDCKVVVEQGVESPRELTVGVMG 244 Query: 195 -EEILPSIRIQP----SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLG 249 ++ + I S ++++++KY + PA LE + + ++ + Sbjct: 245 IDDQVSLSAIGEFSRGSNLYFNFDSKYGKTGHKGLVPAPLEENIQEIIEKYSHLIFKKFE 304 Query: 250 CKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 G+ RID L D + YL E NT PG + + G+ + + + +E Sbjct: 305 LSGFARIDYFLCGD-KVYLNEINTMPGFETGDTFMRIWQNKGVDMQKFIDKAIE 357 >UniRef50_B0RDP5 D-alanine--D-alanine ligase B n=4 Tax=Actinobacteria (class) RepID=B0RDP5_CLAMS Length = 321 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 156/306 (50%), Gaps = 5/306 (1%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 + VL GG S ER+VSL SG V+ LR G+ A DP + L+ V+ LHG Sbjct: 9 VLVLAGGISHERDVSLRSGRRVVDALRGAGVVASLRDPDATLLDFLRETPPAVVWPVLHG 68 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEF-E 123 GEDG L G+LEL G+PY GS A+ L+ DK +K + G+ V L + F E Sbjct: 69 ASGEDGALLGLLELAGVPYVGSSARAARLAWDKPTAKAIAGTVGIRTPRSVTLPKDTFRE 128 Query: 124 KGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWL 183 G + A+ P VKP+R GS+ G++ V +AL A+ A+ + + LIE+ + Sbjct: 129 LGAAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVRDADALPRAMVDAYTYGDVALIEQLI 188 Query: 184 SGPEFTVAIL----GEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQA 239 G E + ++ G E LP+ I P+ Y YEA+Y + T+++ PA + + A Sbjct: 189 EGTEVAIGVIDTGAGPEALPATEIVPTSGVYGYEARYNAGLTRFYTPARISPEEAAAAST 248 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVV 299 + LG R+D+++D+ G+ + LE N PG+T SL+P AG+ L Sbjct: 249 AAVGIHRALGIGQMSRVDIIIDAAGEPWFLEVNVIPGLTETSLLPQGLAAAGIEVGDLYR 308 Query: 300 RILELA 305 R+ E A Sbjct: 309 RLAEAA 314 >UniRef50_C8P0A6 D-alanine--D-lactate ligase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0A6_ERYRH Length = 338 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 94/342 (27%), Positives = 157/342 (45%), Gaps = 49/342 (14%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT------------- 48 ++A++ G ++E ++S+ S A+VL + D P+ + Sbjct: 3 KLQVALVFGSINSEHDISVASAASVLEHFPKEKFDCVPLYIGKDGKWYTGNYTLDMMQSN 62 Query: 49 QLK-----------------------SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTG 85 +L+ + F+ LHGR GE G +QG+L+ +P+TG Sbjct: 63 KLEGHRELYLQFNYDRPGFIYADDQSLLPVDVAFLMLHGRMGEGGQVQGLLKCANIPFTG 122 Query: 86 SGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKP 145 V++SAL MDK + ++ + AG+ +A + +T + P IVKP Sbjct: 123 CDVLSSALCMDKGFTHIICEAAGIDMAAYQLITHINDID---------FEKVEYPCIVKP 173 Query: 146 SREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG-EEILPSIRIQ 204 SREGSS G+S V + L +A AF+ D VLIE ++ G E + IL ++ L + Sbjct: 174 SREGSSFGVSYVRNYDELLNACLFAFEFDSRVLIEAYIKGTEVGLGILKTDQELIVSEVD 233 Query: 205 P---SGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLD 261 SG +D++ KY T+ + S +Q L A+ L C + R+D + Sbjct: 234 QVNVSGEVFDFQEKYHPHATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFSRLDFFVT 293 Query: 262 SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 D + +L E NT PG TS S P +AG+S+ +L+ +++E Sbjct: 294 EDHRIFLNEVNTIPGFTSSSRYPGMLDRAGVSYPELITKMIE 335 >UniRef50_UPI0001C37AC0 D-alanine--D-alanine ligase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AC0 Length = 357 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 155/350 (44%), Gaps = 46/350 (13%) Query: 1 MTD-KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAY-------------PVDPKEVD 46 M K AV+ GGTS E ++SL S A V+ + E + P D +++ Sbjct: 1 MAKIKAAVIFGGTSREHKLSLASAAEVIRNIPEDKYEVICIGITRKGRWLYFPGDVEDIP 60 Query: 47 VTQLKSM----------------------------GFQKVFIALHGRGGEDGTLQGMLEL 78 + + VF + G+ G DGT+QG+L+L Sbjct: 61 TGEWEQDPDCTSAIISPDPLHRGIILIENGEAVVRKIDVVFPVVMGKHGADGTIQGLLDL 120 Query: 79 MGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALG 138 G+PY G GV+A+A MDK ++ + A W +T+ E + + LG Sbjct: 121 SGIPYVGCGVLAAASCMDKSHIHMVMDDYDIATADWRIITQREI-SEIDKRCHEIAGELG 179 Query: 139 LPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEIL 198 P+IVKP++ G+S G K L A+++AF +D +V++EK++SG + A+ G + Sbjct: 180 FPLIVKPAKSGTSAGTGKADDLAQLIAAVKVAFSNDNKVVVEKYVSGRKMEAAVFGYDTP 239 Query: 199 P---SIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGR 255 I YD S PA + +A+++ +KA+ +GCKG R Sbjct: 240 FSTYIGEILDPDRVYDPTEVNQSTGDGLKIPADISDELQASIRETAVKAYKAMGCKGLAR 299 Query: 256 IDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 +D L DG+ L + TSPG+ +S+ P G+S V +LE A Sbjct: 300 LDFFLTDDGRLLLNKIGTSPGLRKNSVFPKLMEHMGISHEDFVDMLLEQA 349 >UniRef50_Q2S0H9 D-alanine--D-alanine ligase n=2 Tax=Rhodothermaceae RepID=Q2S0H9_SALRD Length = 434 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 96/382 (25%), Positives = 159/382 (41%), Gaps = 85/382 (22%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV----------------DVT 48 + ++LGG + E EVS+ + A L P+ + D+ Sbjct: 24 VGIVLGGVAPEHEVSVITALQAAAALDRDRYTPVPIYVAKDGTWYTGDALLEVEAYRDLD 83 Query: 49 QLKSM-----------------------------------GFQKVFIALHGRGGEDGTLQ 73 L+ + + LHG GE+G +Q Sbjct: 84 ALREDALPVALAPTPYGHLELLEDRAPGILKRLQRPALRRRIDVMLLGLHGGPGENGGVQ 143 Query: 74 GMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAE 133 G+ E +PYT +GV SAL MDK+ SK + + AG+PV +VAL E+ + Sbjct: 144 GLCETFNVPYTSAGVFGSALGMDKVMSKRVCRQAGIPVVDFVALREGEWAGREAAALDEC 203 Query: 134 ISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAI 192 + L P++VKP+R GSS+G+++V L A+ A ++D++V++EK + E ++ Sbjct: 204 EATLDYPLVVKPARCGSSIGIAQVNTRAELDAAIEDALRYDDKVVVEKAVEALREINCSV 263 Query: 193 LGE--EILPSIRIQP----SGTFYDYEAKYLSDETQ----------------------YF 224 LG+ E PS+ +P ++ KY+ ++ + Sbjct: 264 LGDGHEATPSVLEEPVPSDDDAVLTFQDKYMREDGEAAKAEGGTKSAESSPEGMAAQDRI 323 Query: 225 CPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLV 283 PA L + +Q L ++ + C G RID M+D G+ Y E NT PG S Sbjct: 324 VPANLSDERTETIQDLAVRIFHQFECAGVVRIDFMIDESTGRVYFNEINTIPG----SFS 379 Query: 284 PMAARQAGMSFSQLVVRILELA 305 +G+SF LV R++ +A Sbjct: 380 FYLWEPSGVSFDALVDRLVTIA 401 >UniRef50_B2RIT4 D-alanine--D-alanine ligase n=32 Tax=root RepID=DDL_PORG3 Length = 330 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 94/328 (28%), Positives = 153/328 (46%), Gaps = 30/328 (9%) Query: 1 MTDKI-AVLLGGTSAEREVSLNSGAAVLAGL------------REGGIDA-------YPV 40 M I AV+ GG S E VSL S A +L+ L P+ Sbjct: 1 MKKPIVAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPL 60 Query: 41 DPKEVDVT-QLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 D + + + F +I +HG GE+G LQG L+++G+PY + +L+ +K Sbjct: 61 DKNDFSFDLDDERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYV 120 Query: 100 SKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA 159 G G+ +A + LT + + ++D + +GLP+ VKP+ GSS+ +KVV Sbjct: 121 CNRFLSGFGIRIADSMRLTGRDTQPDVADL----TARMGLPLFVKPNVGGSSIATTKVVE 176 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAK 215 L A+ AF EEV+IE+ + G E T + LP + F+D++AK Sbjct: 177 AAQLLPAIGQAFSEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEVVAHNEFFDFDAK 236 Query: 216 YLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSP 275 Y + + PA + +Q + + + L +G R+D ++++DG LLE NT+P Sbjct: 237 Y-NGAVEEITPARISDEATRLIQTMTARIYELLNARGIIRVDYIIEADGIPTLLEVNTTP 295 Query: 276 GMTSHSLVPMAARQAGMSFSQLVVRILE 303 GMT S +P R A M +++ I+ Sbjct: 296 GMTPTSFIPQQVRAAEMDMKEVLCTIIR 323 >UniRef50_A5F083 D-alanine--D-alanine ligase n=58 Tax=Gammaproteobacteria RepID=DDL_VIBC3 Length = 329 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 100/327 (30%), Positives = 144/327 (44%), Gaps = 29/327 (8%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLR-------------------EGGIDAYPVDP 42 I +L GG S+E E+SL S + L E G Y Sbjct: 3 KTTILLLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTN 62 Query: 43 KEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL 102 + S V +HG GE G +Q MLEL G+PY G G ASA S +K+ SKL Sbjct: 63 SATLNSDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKL 122 Query: 103 LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENA 162 + +P P++ LT+ DK G + VK +R+GSSVG KV E+ Sbjct: 123 WYDALDIPNTPYLFLTQNT--PSSIDKAKQAFGHWGS-IFVKAARQGSSVGCYKVTTEDQ 179 Query: 163 LQDALRLAFQHDEEVLIEKWLSGPEFTVAI--LGEEIL---PSIRIQPSGTFYDYEAKYL 217 + A+ AF E+VL+E+ + E V+ + ++ P I P GTFY YE KY Sbjct: 180 IAPAIEAAFGFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYS 239 Query: 218 SDE-TQYFCPAG-LEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSP 275 ++ + A L + +Q + + + + RID L +GQ YL E NT P Sbjct: 240 ANSHARTVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQEGQIYLNEVNTFP 299 Query: 276 GMTSHSLVPMAARQAGMSFSQLVVRIL 302 GMT S+ P G FS+ + + + Sbjct: 300 GMTPISMFPKMLEHNGHRFSEFLAQCV 326 >UniRef50_D2MND8 D-ala D-ala ligase N-terminal domain protein n=2 Tax=Erysipelotrichaceae RepID=D2MND8_9FIRM Length = 394 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 150/367 (40%), Gaps = 67/367 (18%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV--------------- 45 M ++ V GG S E EVS+ S + L + + P+ + Sbjct: 1 MKLRVGVFFGGESVEHEVSIISAQQAIHALDKDKYEVIPLYVAKDRKIYYNPEKFFSVEN 60 Query: 46 -------------------------------DVTQLKSMGFQKVFIALHGRGGEDGTLQG 74 + +HG GEDGT+QG Sbjct: 61 FTNLPALLKESIQVTLVNLGNECAIRPVHIGLFQKKTLGTIDLAIPVMHGTNGEDGTIQG 120 Query: 75 MLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEI 134 + E++ +P+ G + + + DK+ K + LP+ PW + + E + + L ++ Sbjct: 121 LFEMLKIPFAGCDIYGAVIGQDKVFQKHILHDNHLPITPWFWVYGQDIETYQT-QILEKV 179 Query: 135 SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLSG-PEFTVAIL 193 ++LG PVI+KP+R GSS+G+S D + A ++DE+++ EK + E +++ Sbjct: 180 NSLGYPVILKPARTGSSIGISIAHDNEEYLDCFKDAMRYDEKIITEKVIKPMREINCSVI 239 Query: 194 GEEILPSIRIQP-----SGTFYDYEAKYLS---------DETQYFCPAGLEASQEANLQA 239 G+ + D++ KY S T PA L + +Q Sbjct: 240 GDHTGSRASVLEEVTQQEKELLDFDKKYGSGGSKGKSGMAATSRQVPAPLSHEETKYIQQ 299 Query: 240 LVLKAWTTLGCKGWGRIDVMLDSD-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLV 298 L + LG G RID ++D++ + Y+ E NT PG SL ++ G+ FS+L+ Sbjct: 300 LAKDTFRVLGSAGVCRIDFIMDAETKKIYINEINTIPG----SLAFYLWKEEGVDFSKLM 355 Query: 299 VRILELA 305 +++ LA Sbjct: 356 NQLITLA 362 >UniRef50_C5VHA8 D-ala D-ala ligase n=7 Tax=root RepID=C5VHA8_9BACT Length = 332 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 100/330 (30%), Positives = 160/330 (48%), Gaps = 34/330 (10%) Query: 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVD--------------- 46 IA++ GG S+E +VS+ SG + + + + Y VD K +D Sbjct: 5 KRTIAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDK 64 Query: 47 -----VTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSK 101 V + + F +I +HG+ GE+G +QG +L+ +PY+ GV+ AL+ DK Sbjct: 65 NDFSFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQIPYSTGGVLVEALTFDKYVLN 124 Query: 102 LLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAEN 161 +G G+ VA + L R E + LG+P VKP+ +GSS G+SKV + Sbjct: 125 NYLRGFGIKVADSILLRRGEEYD-----EAEIEKRLGMPCFVKPAADGSSFGVSKVKNID 179 Query: 162 ALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYL 217 L ALR+AF +EV+IE ++ G E + + + + P+ + S F+DY AKY Sbjct: 180 QLAPALRVAFMQSDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEVVTSNEFFDYNAKY- 238 Query: 218 SDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVML--DSDGQ--FYLLEANT 273 + + + PA + + A + L G RID ++ D DG+ +LE NT Sbjct: 239 NGQVEEITPARMSDETAKRVAAETSCIYDILHANGIIRIDYIISKDKDGKDVINMLEINT 298 Query: 274 SPGMTSHSLVPMAARQAGMSFSQLVVRILE 303 +PGMT S +P R AG+ ++ I+E Sbjct: 299 TPGMTVTSFIPQQVRAAGLDIKNVLSDIVE 328 >UniRef50_Q7ME85 D-alanine--D-alanine ligase n=8 Tax=Vibrionaceae RepID=DDL_VIBVY Length = 331 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 142/333 (42%), Gaps = 31/333 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGL-------------REGGI-----DAYPVDP 42 M + +L GG S+E E+SL S + L + G +D Sbjct: 1 MMRNVLLLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDI 60 Query: 43 KEVDVTQLK---SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLR 99 V + S+ + +HG GE G +Q + EL G+PY G G AS+ S +K+ Sbjct: 61 HTKSVKSDEFNESIDIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKIT 120 Query: 100 SKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVA 159 SKL + G+P P++ LT E ++ + + VK +R+GSSVG V Sbjct: 121 SKLWYDAIGIPNTPYLFLTENNEESHQLSREAFDKWG---KLFVKAARQGSSVGCYSVTN 177 Query: 160 ENALQDALRLAFQHDEEVLIEKWLSGPEFTVAILG-EEIL----PSIRIQPSGTFYDYEA 214 L DA+ AF +VL+EK + E V+ L P I P G FY Y+ Sbjct: 178 IEQLSDAIDKAFGFSHQVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDE 237 Query: 215 KYLSDE--TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEAN 272 KY + L Q A +Q K + + + RID L S+G+ YL E N Sbjct: 238 KYSAGSHSITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLTSEGEIYLNEVN 297 Query: 273 TSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 305 T PGMT S+ P + G F + + +E + Sbjct: 298 TFPGMTKISMFPKMLQHNGHKFHEFLADCIERS 330 >UniRef50_A1SMF1 D-alanine--D-alanine ligase n=1 Tax=Nocardioides sp. JS614 RepID=A1SMF1_NOCSJ Length = 311 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 105/322 (32%), Positives = 145/322 (45%), Gaps = 30/322 (9%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSM------- 53 M ++AV+ GG S E +VSL S AAV AGL D + + Sbjct: 1 MRTRVAVVGGGRSCEHDVSLASAAAVAAGLDPHRYDVVRLTIGRDGAWRDGDRPVGLAAA 60 Query: 54 -----GFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAG 108 VF HG GEDGTL + EL G+PY GSGV A AL+MDK +KL+ G Sbjct: 61 VEVLRRCDVVFPVAHGPHGEDGTLAALCELAGVPYVGSGVRAGALAMDKWATKLVAAALG 120 Query: 109 LPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALR 168 + A +T A PV+VKP GSS+G++ V +L AL Sbjct: 121 IATAAGRLVT----------AATATQETWTGPVVVKPVAAGSSIGVAFVSEPASLPPALA 170 Query: 169 LAFQHDEEVLIEKWLSGPEFTVAIL-----GEEILPSIRIQPSGTFYDYEAKYLSDETQY 223 A D+ L+E+ ++G E VA+L P + I + +D++AKY + Sbjct: 171 TALALDDRALVEELVTGREIDVAVLRRADGAVVASPPLEIV-ADGLFDFDAKY-GGRADF 228 Query: 224 FCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLV 283 PA L+ L+ + + LGC G R+D L G L E NT PGMT HS V Sbjct: 229 RVPAVLDEVDAKALEGAAVATYDALGCSGVARVDFFLTDTG-PVLNEVNTVPGMTEHSQV 287 Query: 284 PMAARQAGMSFSQLVVRILELA 305 P AG+ + L+ ++ A Sbjct: 288 PRMFAAAGLPYPDLLDELVCGA 309 >UniRef50_A6TUJ5 D-alanine--D-alanine ligase domain protein n=3 Tax=Firmicutes RepID=A6TUJ5_ALKMQ Length = 714 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 77/303 (25%), Positives = 136/303 (44%), Gaps = 27/303 (8%) Query: 20 LNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS--------MGFQKVFIALHG--RGGED 69 L + + GL GG + + +T+L+ VF +G G Sbjct: 28 LETINKIKEGLTAGGHQVKTFEGDKNIITKLEKFMPSVISGERPGLVFNLSYGIQGKGRY 87 Query: 70 GTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDK 129 + G+LE++G+PY GSG A+++DK+ +K++ GLP + + + + E Sbjct: 88 MHVPGILEMLGIPYVGSGPETHAIALDKIVTKMILIQKGLPTPKFTVMDKPDSE------ 141 Query: 130 QLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ-HDEEVLIEKWLSGPEF 188 L P+IVKP E S G+ V E L+D ++ ++ + L+E+++ G E Sbjct: 142 ---IKDNLKYPLIVKPKDEAVSFGLKIVHNEEELRDGVKTIYEAFNTPTLVEEYIEGREI 198 Query: 189 TVAILGE---EILPSIRIQPSGT--FYDYEAKYLSDE--TQYFCPAGLEASQEANLQALV 241 V +LG E +P + + Y YE K + + CPA L + ++ L Sbjct: 199 NVGLLGNNPVEAMPPVELTFGEGLQIYTYEDKKNTSGRTVEKICPAPLSDEKTEQIKQLA 258 Query: 242 LKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 301 + + LGC R+D LD +G Y+LE N+ + AA + G+ + LV R+ Sbjct: 259 IDTFNALGCYDSARVDFRLDQEGNPYILEVNSMASLGKSGSFVYAAEKMGLDYVALVNRL 318 Query: 302 LEL 304 +++ Sbjct: 319 IDV 321 >UniRef50_A9BI46 D-alanine--D-alanine ligase n=1 Tax=Petrotoga mobilis SJ95 RepID=DDL_PETMO Length = 298 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 87/303 (28%), Positives = 140/303 (46%), Gaps = 19/303 (6%) Query: 5 IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64 I ++ GG S ERE+SL S V + G +D + D K ++ F +HG Sbjct: 3 IPIITGGKSKEREISLTSAKNVFNSISNLGYKPVILDLIDDDFIN-KIQNYKFAFNVVHG 61 Query: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124 GEDG L +LE++G+ YT S + DK L++ + + + Sbjct: 62 DYGEDGRLPSLLEILGIDYTCSNPETCIATYDKFIFYSLFKNY-IQMPQTTLTNK----- 115 Query: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS 184 + P I+KP + GSS G+ + EN + L + +EVL+++++ Sbjct: 116 -------LILPPFEYPFIIKPRKSGSSKGVYIIHNENEYKFYLEKDLKEFQEVLVQEYIK 168 Query: 185 GPEFTVAILGEE----ILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 G E T++ + + +LP + I P FYDYEAKY + T+ + + Sbjct: 169 GREITISYIQKNEEFILLPILEIIPKKEFYDYEAKYTNGLTELKPQLNSPEKIIQKINEI 228 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 TL K RID +L D + Y+LE NT PG+T S +P +A AG+SF +L+ Sbjct: 229 GNHVMQTLTFKDMFRIDAIL-KDDEVYVLEINTVPGLTELSDLPTSALAAGISFDELINI 287 Query: 301 ILE 303 I++ Sbjct: 288 IIK 290 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.181 0.564 Lambda K H 0.267 0.0556 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,573,319,237 Number of Sequences: 3077464 Number of extensions: 144843646 Number of successful extensions: 357743 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2194 Number of HSP's successfully gapped in prelim test: 3032 Number of HSP's that attempted gapping in prelim test: 343599 Number of HSP's gapped (non-prelim): 6486 length of query: 306 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 178 effective length of database: 646,480,964 effective search space: 115073611592 effective search space used: 115073611592 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 94 (40.4 bits)