16/01/2012 01:37:27 : INFO  : Run start: Mon Jan 16 01:37:27 GMT 2012
16/01/2012 01:37:31 : INFO  : Initialised job
16/01/2012 01:37:32 : INFO  : Renaming log file 'phyre2_20120116_013726.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/d8384f660faba499/phyre_20120116_013726.log'
16/01/2012 01:37:32 : INFO  : Initialised job:
Sequence
>batch____
MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADG
LARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVG
ISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESV
SMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVCS
LMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATV
LHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRAR
QCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGL
GTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGM
VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRL
VFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT

16/01/2012 01:37:33 : INFO  : Checked sequence
16/01/2012 01:37:35 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 01:37:35 : INFO  : PSI-BLAST 3 iterations
16/01/2012 01:41:15 : INFO  : PSI-BLAST 5 iterations
16/01/2012 01:44:53 : INFO  : Finished PSI-BLAST
16/01/2012 01:44:55 : INFO  : Running Buildali to generate a3m file
16/01/2012 02:05:34 : INFO  : Converting to HMM
16/01/2012 02:05:44 : INFO  : Calibrating HMM
16/01/2012 02:06:07 : INFO  : Searching HMM database
16/01/2012 02:19:06 : INFO  : Finished buildali
16/01/2012 02:19:07 : INFO  : Predicting secondary structure
16/01/2012 02:19:13 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 02:19:14 : INFO  : Predicting Disordered regions
16/01/2012 02:19:17 : INFO  : Predicted Disorder (Disopred)
16/01/2012 02:19:18 : INFO  : Running memsat_svm check
16/01/2012 02:31:07 : INFO  : Running memsat_svm full
16/01/2012 02:36:31 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd8384f660faba499'
16/01/2012 02:36:32 : INFO  : Initialising fold library search
16/01/2012 02:36:34 : INFO  : Initialised search input
16/01/2012 02:36:35 : INFO  : Building Ensemble models
16/01/2012 02:36:37 : INFO  : Building hh.c1yi1A_.model.1.pdb
16/01/2012 02:36:46 : INFO  : Building hh.c2panF_.model.2.pdb
16/01/2012 02:36:53 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d8384f660faba499/hh.c2panF_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d8384f660faba499/c2panF_.4.pdb
16/01/2012 02:36:56 : INFO  : Building hh.c1t9dB_.model.3.pdb
16/01/2012 02:37:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d8384f660faba499/hh.c1t9dB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d8384f660faba499/c1t9dB_.6.pdb
16/01/2012 02:37:06 : INFO  : Building hh.c1jscA_.model.4.pdb
16/01/2012 02:37:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d8384f660faba499/hh.c1jscA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d8384f660faba499/c1jscA_.10.pdb
16/01/2012 02:37:17 : INFO  : Building c1yi1A_.1.pdb
16/01/2012 02:37:27 : INFO  : Building c1powA_.2.pdb
16/01/2012 02:37:36 : INFO  : Building c2djiA_.3.pdb
16/01/2012 02:37:44 : INFO  : Building c2panF_.4.pdb
16/01/2012 02:37:53 : INFO  : Building c2pgnA_.5.pdb
16/01/2012 02:38:02 : INFO  : Building c1t9dB_.6.pdb
16/01/2012 02:38:11 : INFO  : Building c3eyaE_.7.pdb
16/01/2012 02:38:21 : INFO  : Building c2q27B_.8.pdb
16/01/2012 02:38:30 : INFO  : Building c1ozhD_.9.pdb
16/01/2012 02:38:39 : INFO  : Building c1jscA_.10.pdb
16/01/2012 02:38:50 : INFO  : Building c2ag1A_.11.pdb
16/01/2012 02:38:59 : INFO  : Building c2ji6B_.12.pdb
16/01/2012 02:39:07 : INFO  : Building c1zpdA_.13.pdb
16/01/2012 02:39:17 : INFO  : Building c1upaC_.14.pdb
16/01/2012 02:39:25 : INFO  : Building c2v3wC_.15.pdb
16/01/2012 02:39:34 : INFO  : Building c2x7jA_.16.pdb
16/01/2012 02:39:44 : INFO  : Building c2vbiF_.17.pdb
16/01/2012 02:39:53 : INFO  : Building c2vbgB_.18.pdb
16/01/2012 02:40:03 : INFO  : Building c1ovmC_.19.pdb
16/01/2012 02:40:14 : INFO  : Building c2w93A_.20.pdb
16/01/2012 02:41:15 : INFO  : Finished HH model building
16/01/2012 02:41:16 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 02:42:04 : INFO  : html domain output complete ID 'd8384f660faba499'
16/01/2012 08:08:09 : INFO  : Run end  : Mon Jan 16 08:08:08 GMT 2012
