18/01/2012 13:21:33 : INFO  : Run start: Wed Jan 18 13:21:31 GMT 2012
18/01/2012 13:21:44 : INFO  : Initialised job
18/01/2012 13:21:47 : INFO  : Renaming log file 'phyre2_20120118_132130.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/d82d6d945d1e3c38/phyre_20120118_132130.log'
18/01/2012 13:21:49 : INFO  : Initialised job:
Sequence
>batch____
MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVL
GHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPD
GTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHN
TAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPND
YDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAVAGQEISTRP
FQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEG
KSIRTVIRY

18/01/2012 13:21:51 : INFO  : Checked sequence
18/01/2012 13:21:57 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 13:21:59 : INFO  : PSI-BLAST 3 iterations
18/01/2012 13:24:29 : INFO  : PSI-BLAST 5 iterations
18/01/2012 13:28:14 : INFO  : Finished PSI-BLAST
18/01/2012 13:28:19 : INFO  : Running Buildali to generate a3m file
18/01/2012 14:53:32 : INFO  : Converting to HMM
18/01/2012 14:53:50 : INFO  : Calibrating HMM
18/01/2012 14:54:13 : INFO  : Searching HMM database
18/01/2012 15:00:48 : INFO  : Finished buildali
18/01/2012 15:00:51 : INFO  : Predicting secondary structure
18/01/2012 15:01:06 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 15:01:11 : INFO  : Predicting Disordered regions
18/01/2012 15:01:19 : INFO  : Predicted Disorder (Disopred)
18/01/2012 15:01:22 : INFO  : Running memsat_svm check
18/01/2012 15:06:20 : INFO  : Globular protein
18/01/2012 15:06:22 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd82d6d945d1e3c38'
18/01/2012 15:06:25 : INFO  : Initialising fold library search
18/01/2012 15:06:31 : INFO  : Initialised search input
18/01/2012 15:06:35 : INFO  : Building Ensemble models
18/01/2012 15:06:41 : INFO  : Building hh.c1ma0B_.model.1.pdb
18/01/2012 15:07:08 : INFO  : Building c1ma0B_.1.pdb
18/01/2012 15:07:34 : INFO  : Building c1hf3A_.2.pdb
18/01/2012 15:08:03 : INFO  : Building c3cosD_.3.pdb
18/01/2012 15:08:31 : INFO  : Building c1cdoB_.4.pdb
18/01/2012 15:08:56 : INFO  : Building c1p0fA_.5.pdb
18/01/2012 15:09:23 : INFO  : Building c1f8fA_.6.pdb
18/01/2012 15:09:49 : INFO  : Building c3krtC_.7.pdb
18/01/2012 15:10:17 : INFO  : Building c1pl6A_.8.pdb
18/01/2012 15:10:43 : INFO  : Building c1vj0B_.9.pdb
18/01/2012 15:11:09 : INFO  : Building c4a10A_.10.pdb
18/01/2012 15:11:36 : INFO  : Building c3uogB_.11.pdb
18/01/2012 15:12:02 : INFO  : Building c2dphA_.12.pdb
18/01/2012 15:12:31 : INFO  : Building c2dfvB_.13.pdb
18/01/2012 15:12:57 : INFO  : Building c1kolA_.14.pdb
18/01/2012 15:13:21 : INFO  : Building c1kevB_.15.pdb
18/01/2012 15:13:47 : INFO  : Building c1yqxB_.16.pdb
18/01/2012 15:14:13 : INFO  : Building c2cf5A_.17.pdb
18/01/2012 15:14:39 : INFO  : Building c3ip1C_.18.pdb
18/01/2012 15:15:06 : INFO  : Building c2ouiB_.19.pdb
18/01/2012 15:15:32 : INFO  : Building c2eihA_.20.pdb
18/01/2012 15:16:31 : INFO  : Finished HH model building
18/01/2012 15:16:34 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 15:17:35 : INFO  : html domain output complete ID 'd82d6d945d1e3c38'
18/01/2012 16:45:05 : INFO  : Run end  : Wed Jan 18 16:45:02 GMT 2012
