Phyre 2 Results for P09996

Email | l.a.kelley@imperial.ac.uk
Description | P09996
Date | Thu Jan 5 11:02:37 GMT 2012
Unique Job ID | d80d58f98a062338

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1z67a1 |
|  | 100.0 | 97 | Fold:YidB-like Superfamily:YidB-like Family:YidB-like
2 | d1b8za_ |
|  | 68.4 | 21 | Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein
3 | d1huua_ |
|  | 66.2 | 18 | Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein
4 | c2lfcA_ |
|  | 62.9 | 4 | PDB header:oxidoreductase Chain: A: PDB Molecule:fumarate reductase, flavoprotein subunit; PDBTitle: solution nmr structure of fumarate reductase flavoprotein subunit from2 lactobacillus plantarum, northeast structural genomics consortium3 target lpr145j
5 | d1y0pa3 |
|  | 62.4 | 21 | Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
6 | d1d4ca3 |
|  | 57.5 | 8 | Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
7 | c1tr8A_ |
|  | 57.3 | 15 | PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac)
8 | d1mula_ |
|  | 53.3 | 21 | Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein
9 | d1p71a_ |
|  | 51.6 | 28 | Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein
10 | c3c4iA_ |
|  | 49.5 | 26 | PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv]
11 | d1qo8a3 |
|  | 47.6 | 13 | Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
12 | d1tafb_ |
|  | 47.3 | 25 | Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs
13 | d1owfa_ |
|  | 43.0 | 26 | Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein
14 | d1l0oc_ |
|  | 41.6 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
15 | c1l0oC_ |
|  | 41.6 | 17 | PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf
16 | d1exea_ |
|  | 40.2 | 21 | Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein
17 | d2o97b1 |
|  | 40.1 | 11 | Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein
18 | c3ebnD_ |
|  | 37.5 | 20 | PDB header:hydrolase Chain: D: PDB Molecule:replicase polyprotein 1ab; PDBTitle: a special dimerization of sars-cov main protease c-terminal2 domain due to domain-swapping
19 | d1uxca_ |
|  | 34.8 | 25 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator
20 | d2p7vb1 |
|  | 34.6 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
21 | d2hsga1 |
| not modelled | 33.6 | 20 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator
22 | d2phcb1 |
| not modelled | 33.1 | 13 | Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like
23 | d1qpza1 |
| not modelled | 32.1 | 25 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator
24 | d1lcda_ |
| not modelled | 32.1 | 25 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator
25 | c2iifA_ |
| not modelled | 31.8 | 26 | PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna
26 | d2duca1 |
| not modelled | 30.3 | 20 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold
27 | c2zp2B_ |
| not modelled | 30.2 | 4 | PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis
28 | c2w7nA_ |
| not modelled | 30.0 | 18 | PDB header:transcription/dna Chain: A: PDB Molecule:trfb transcriptional repressor protein; PDBTitle: crystal structure of kora bound to operator dna: insight2 into repressor cooperation in rp4 gene regulation
29 | c2lcvA_ |
| not modelled | 28.4 | 35 | PDB header:transcription regulator Chain: A: PDB Molecule:hth-type transcriptional repressor cytr; PDBTitle: structure of the cytidine repressor dna-binding domain; an alternate2 calculation
30 | d2cg4a1 |
| not modelled | 26.8 | 18 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
31 | d1uxda_ |
| not modelled | 25.8 | 25 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator
32 | d2bjca1 |
| not modelled | 25.8 | 25 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator
33 | c2l8nA_ |
| not modelled | 23.9 | 35 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional repressor cytr; PDBTitle: nmr structure of the cytidine repressor dna binding domain in presence2 of operator half-site dna
34 | d1i1ga1 |
| not modelled | 23.7 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
35 | c3h5tA_ |
| not modelled | 23.4 | 25 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from corynebacterium glutamicum
36 | c1bdhA_ |
| not modelled | 22.5 | 25 | PDB header:transcription/dna Chain: A: PDB Molecule:protein (purine repressor); PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
37 | d1z6ra1 |
| not modelled | 21.9 | 18 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain
38 | d1ku7a_ |
| not modelled | 21.4 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
39 | d1efaa1 |
| not modelled | 21.1 | 25 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator
40 | d2cyya1 |
| not modelled | 21.1 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
41 | d2fug21 |
| not modelled | 21.1 | 4 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like
42 | d1ku3a_ |
| not modelled | 19.7 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
43 | c3kjxD_ |
| not modelled | 19.1 | 30 | PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi
44 | d1wh5a_ |
| not modelled | 19.0 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
45 | c1or7A_ |
| not modelled | 19.0 | 13 | PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma-e factor; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
46 | c2phcB_ |
| not modelled | 18.5 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
47 | d1tw3a1 |
| not modelled | 17.7 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain
48 | c1zvvA_ |
| not modelled | 17.7 | 19 | PDB header:transcription/dna Chain: A: PDB Molecule:glucose-resistance amylase regulator; PDBTitle: crystal structure of a ccpa-crh-dna complex
49 | d1ttya_ |
| not modelled | 17.4 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
50 | d1qzza1 |
| not modelled | 17.3 | 21 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Plant O-methyltransferase, N-terminal domain
51 | d3proc1 |
| not modelled | 17.2 | 13 | Fold:Alpha-lytic protease prodomain-like Superfamily:Alpha-lytic protease prodomain Family:Alpha-lytic protease prodomain
52 | d1x2na1 |
| not modelled | 16.8 | 0 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
53 | d2gqba1 |
| not modelled | 16.7 | 20 | Fold:RPA2825-like Superfamily:RPA2825-like Family:RPA2825-like
54 | d3e11a1 |
| not modelled | 16.7 | 11 | Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:TTHA0227-like
55 | d1wi9a_ |
| not modelled | 16.5 | 26 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif)
56 | d2cfxa1 |
| not modelled | 16.4 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
57 | c2da4A_ |
| not modelled | 15.6 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156
58 | d1e3oc1 |
| not modelled | 15.5 | 6 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
59 | c3d23A_ |
| not modelled | 15.4 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:3c-like proteinase; PDBTitle: main protease of hcov-hku1
60 | d1x2ma1 |
| not modelled | 15.0 | 16 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
61 | d1or7a1 |
| not modelled | 15.0 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
62 | c2kz3A_ |
| not modelled | 14.5 | 19 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein rad51l3; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83
63 | c2cg4B_ |
| not modelled | 14.3 | 17 | PDB header:transcription Chain: B: PDB Molecule:regulatory protein asnc; PDBTitle: structure of e.coli asnc
64 | c3majA_ |
| not modelled | 14.3 | 15 | PDB header:dna binding protein Chain: A: PDB Molecule:dna processing chain a; PDBTitle: crystal structure of putative dna processing protein dpra from2 rhodopseudomonas palustris cga009
65 | c2q6fB_ |
| not modelled | 14.2 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:infectious bronchitis virus (ibv) main protease; PDBTitle: crystal structure of infectious bronchitis virus (ibv) main2 protease in complex with a michael acceptor inhibitor n3
66 | c1rr7A_ |
| not modelled | 14.1 | 18 | PDB header:transcription Chain: A: PDB Molecule:middle operon regulator; PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu
67 | d1rr7a_ |
| not modelled | 14.1 | 18 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Middle operon regulator, Mor
68 | d1alna1 |
| not modelled | 14.0 | 29 | Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase
69 | c1y66D_ |
| not modelled | 13.8 | 17 | PDB header:de novo protein Chain: D: PDB Molecule:engrailed homeodomain; PDBTitle: dioxane contributes to the altered conformation and2 oligomerization state of a designed engrailed homeodomain3 variant
70 | c2l4aA_ |
| not modelled | 13.8 | 10 | PDB header:dna binding protein Chain: A: PDB Molecule:leucine responsive regulatory protein; PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
71 | d1e0ga_ |
| not modelled | 13.6 | 15 | Fold:LysM domain Superfamily:LysM domain Family:LysM domain
72 | d1bw5a_ |
| not modelled | 13.5 | 11 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
73 | d2cqxa1 |
| not modelled | 13.4 | 11 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
74 | c2yskA_ |
| not modelled | 13.4 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1432; PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus
75 | c2np2B_ |
| not modelled | 13.3 | 10 | PDB header:dna binding protein/dna Chain: B: PDB Molecule:hbb; PDBTitle: hbb-dna complex
76 | c2qufB_ |
| not modelled | 13.2 | 16 | PDB header:transcription Chain: B: PDB Molecule:transcription factor pf0095; PDBTitle: crystal structure of transcription factor axxa-pf0095 from pyrococcus2 furiosus
77 | d1p9sa_ |
| not modelled | 13.2 | 27 | Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold
78 | c3mmlD_ |
| not modelled | 13.0 | 4 | PDB header:hydrolase Chain: D: PDB Molecule:allophanate hydrolase subunit 1; PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
79 | d2ozua1 |
| not modelled | 12.8 | 15 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT
80 | c1alnA_ |
| not modelled | 12.7 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:cytidine deaminase; PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine
81 | c2l0kA_ |
| not modelled | 12.5 | 37 | PDB header:transcription Chain: A: PDB Molecule:stage iii sporulation protein d; PDBTitle: nmr solution structure of a transcription factor spoiiid in complex2 with dna
82 | c2e1cA_ |
| not modelled | 12.5 | 14 | PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
83 | c3t72o_ |
| not modelled | 12.5 | 19 | PDB header:transcription/dna Chain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
84 | c2da5A_ |
| not modelled | 12.4 | 6 | PDB header:dna binding protein Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3; PDBTitle: solution structure of the second homeobox domain of zinc2 fingers and homeoboxes protein 3 (triple homeobox 13 protein)
85 | d1mh3a1 |
| not modelled | 12.4 | 11 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
86 | c2djpA_ |
| not modelled | 12.3 | 20 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein sb145; PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145
87 | d1s7ea1 |
| not modelled | 12.2 | 26 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
88 | d2r5yb1 |
| not modelled | 12.2 | 28 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
89 | c4proD_ |
| not modelled | 12.0 | 12 | PDB header:serine protease Chain: D: PDB Molecule:alpha-lytic protease; PDBTitle: alpha-lytic protease complexed with pro region
90 | c2da7A_ |
| not modelled | 11.9 | 6 | PDB header:dna binding protein Chain: A: PDB Molecule:zinc finger homeobox protein 1b; PDBTitle: solution structure of the homeobox domain of zinc finger2 homeobox protein 1b (smad interacting protein 1)
91 | c3nauA_ |
| not modelled | 11.8 | 22 | PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2; PDBTitle: crystal structure of zhx2 hd2 (zinc-fingers and homeoboxes protein 2,2 homeodomain 2)
92 | c3f6wE_ |
| not modelled | 11.7 | 24 | PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
93 | d1k61a_ |
| not modelled | 11.6 | 11 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
94 | c2a6eF_ |
| not modelled | 11.6 | 20 | PDB header:transferase Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: crystal structure of the t. thermophilus rna polymerase2 holoenzyme
95 | d2ecba1 |
| not modelled | 11.5 | 5 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
96 | d2hddb_ |
| not modelled | 11.5 | 20 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
97 | d1du6a_ |
| not modelled | 11.5 | 28 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain
98 | d1j5ya1 |
| not modelled | 11.5 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like
99 | c2k5eA_ |
| not modelled | 11.4 | 7 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195