Phyre 2 alignment of P09996 with d1l0oc_

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Job Description | P09996
Confidence | 41.56% | Date | Thu Jan 5 11:02:37 GMT 2012
Rank | 14 | Aligned Residues | 30
% Identity | 17% | Template | d1l0oc_
SCOP info | DNA/RNA-binding 3-helical bundle | Sigma3 and sigma4 domains of RNA polymerase sigma factors | Sigma4 domain
Resolution | 2.90

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 64 | . | . | . | . | . | 70 | . |  | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | E | Q | L | E | S | A | L | G | . | T | N | A | V | S | D | L | G | Q | K | L | G | V | D | T | S | T | A | S | S | L | L
Query Conservation |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | E | L | S | K | T | R | G | R | A | P | T | V | T | E | I | A | D | H | L | G | I | S | P | E | D | V | V | L | A | Q
Template Known Secondary structure |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 123 | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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