Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	G	P	V	L	Y	Q	D	R	A	M	K	Q	I	T	F	A	P	R	N	H	L	L	T	N	T	N	T	W	T	P	D	S	Q	W	L	V	F	D	V	R	P	S	G	A	S	F	T	G	E	T	I	E	R	V	N	I	H	T
Secondary structure
SS confidence
Disorder		?	?	?	?											?			?	?	?	?	?	?	?	?																		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	E	V	E	V	I	Y	R	A	S	Q	G	A	H	V	G	V	V	T	V	H	P	K	S	E	K	Y	V	F	I	H	G	P	E	N	P	D	E	T	W	H	Y	D	F	H	H	R	R	G	V	I	V	E	G	G	K	M	S	N	L
Secondary structure
SS confidence
Disorder																																				?	?	?							?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	A	M	D	I	T	A	P	Y	T	P	G	V	L	R	G	G	S	H	V	H	V	F	S	P	N	G	E	R	V	S	F	T	Y	N	D	H	V	M	H	E	L	D	P	A	L	D	L	R	N	V	G	V	A	A	P	F	G	P	V
Secondary structure
SS confidence
Disorder																																																	?		?		?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		N	V	Q	K	Q	H	P	R	E	Y	S	G	S	H	W	C	V	L	V	S	K	T	T	P	T	P	Q	P	G	S	D	E	I	N	R	A	Y	E	E	G	W	V	G	N	H	A	L	A	F	I	G	D	T	L	S	P	K	G	E	K
Secondary structure
SS confidence
Disorder					?	?		?																?	?	?	?													?	?												?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	P	E	L	F	I	V	E	L	P	Q	D	E	A	G	W	K	A	A	G	D	A	P	L	S	G	T	E	T	T	L	P	A	P	P	R	G	V	V	Q	R	R	L	T	F	T	H	H	R	A	Y	P	G	L	V	N	V	P	R	H
Secondary structure
SS confidence
Disorder									?				?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		W	V	R	C	N	P	Q	G	T	Q	I	A	F	L	M	R	D	D	N	G	I	V	Q	L	W	L	I	S	P	Q	G	G	E	P	R	Q	L	T	H	N	K	T	D	I	Q	S	A	F	N	W	H	P	S	G	E	W	L	G	F	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Sequence		L	D	N	R	I	A	C	A	H	A	Q	S	G	E	V	E	Y	L	T	E	H	H	A	N	S	P	S	A	D	A	V	V	F	S	P	D	G	Q	W	L	A	W	M	E	G	G	Q	L	W	I	T	E	T	D	R
Secondary structure
SS confidence
Disorder																								?	?	?	?	?																									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1k32 chain E Region: 2 - 405 Aligned: 395 Modelled: 404 Confidence: 100.0% Identity: 10% PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease Phyre2 PDB 1n6d chain E Region: 2 - 405 Aligned: 395 Modelled: 404 Confidence: 100.0% Identity: 10% PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative Phyre2 PDB 1nr0 chain A Region: 3 - 412 Aligned: 393 Modelled: 410 Confidence: 100.0% Identity: 12% PDB header:structural protein Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1). Phyre2 PDB 3pe7 chain A Region: 3 - 412 Aligned: 336 Modelled: 343 Confidence: 100.0% Identity: 13% PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese Phyre2 PDB 3iyt chain G Region: 14 - 414 Aligned: 377 Modelled: 401 Confidence: 100.0% Identity: 16% PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex Phyre2 PDB 1k32 chain A domain 3 Region: 24 - 415 Aligned: 323 Modelled: 332 Confidence: 100.0% Identity: 10% Fold: 7-bladed beta-propeller Superfamily: Tricorn protease domain 2 Family: Tricorn protease domain 2 Phyre2 PDB 3dm0 chain A Region: 17 - 412 Aligned: 291 Modelled: 305 Confidence: 100.0% Identity: 13% PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Phyre2 PDB 1pi6 chain A Region: 25 - 412 Aligned: 357 Modelled: 380 Confidence: 99.9% Identity: 14% PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form Phyre2 PDB 1xfd chain A domain 1 Region: 6 - 414 Aligned: 374 Modelled: 389 Confidence: 99.9% Identity: 11% Fold: 8-bladed beta-propeller Superfamily: DPP6 N-terminal domain-like Family: DPP6 N-terminal domain-like Phyre2 PDB 2w8b chain B Region: 30 - 395 Aligned: 265 Modelled: 268 Confidence: 99.9% Identity: 13% PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal Phyre2 PDB 3c5m chain C Region: 2 - 412 Aligned: 315 Modelled: 322 Confidence: 99.9% Identity: 11% PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 Phyre2 PDB 1orv chain A domain 1 Region: 5 - 413 Aligned: 382 Modelled: 385 Confidence: 99.9% Identity: 10% Fold: 8-bladed beta-propeller Superfamily: DPP6 N-terminal domain-like Family: DPP6 N-terminal domain-like Phyre2 PDB 3bws chain A Region: 4 - 414 Aligned: 356 Modelled: 372 Confidence: 99.9% Identity: 11% PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 Phyre2 PDB 2bgr chain A domain 1 Region: 5 - 415 Aligned: 384 Modelled: 393 Confidence: 99.9% Identity: 9% Fold: 8-bladed beta-propeller Superfamily: DPP6 N-terminal domain-like Family: DPP6 N-terminal domain-like Phyre2 PDB 1nir chain A domain 2 Region: 15 - 414 Aligned: 353 Modelled: 364 Confidence: 99.9% Identity: 10% Fold: 8-bladed beta-propeller Superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Phyre2 PDB 2ivz chain D Region: 30 - 395 Aligned: 257 Modelled: 283 Confidence: 99.9% Identity: 12% PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain Phyre2 PDB 1gq1 chain B Region: 10 - 414 Aligned: 349 Modelled: 355 Confidence: 99.9% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form Phyre2 PDB 2oaj chain A Region: 10 - 412 Aligned: 365 Modelled: 382 Confidence: 99.9% Identity: 14% PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae Phyre2 PDB 3jro chain A Region: 21 - 415 Aligned: 252 Modelled: 253 Confidence: 99.9% Identity: 13% PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice Phyre2 PDB 1qks chain A domain 2 Region: 16 - 409 Aligned: 363 Modelled: 373 Confidence: 99.9% Identity: 10% Fold: 8-bladed beta-propeller Superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Phyre2 1 c1k32E_ 2 c1n6dE_ 3 c1nr0A_ 4 c3pe7A_ 5 c3iytG_ 6 d1k32a3 7 c3dm0A_ 8 c1pi6A_ 9 d1xfda1 10 c2w8bB_ 11 c3c5mC_ 12 d1orva1 13 c3bwsA_ 14 d2bgra1 15 d1nira2 16 c2ivzD_ 17 c1gq1B_ 18 c2oajA_ 19 c3jroA_ 20 d1qksa2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1k32E_ 100.0 10 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease 2 c1n6dE_ 100.0 10 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative 3 c1nr0A_ 100.0 12 PDB header:structural protein Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1). 4 c3pe7A_ 100.0 13 PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese 5 c3iytG_ 100.0 16 PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex 6 d1k32a3 100.0 10 Fold:7-bladed beta-propeller Superfamily:Tricorn protease domain 2 Family:Tricorn protease domain 2 7 c3dm0A_ 100.0 13 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 8 c1pi6A_ 99.9 14 PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form 9 d1xfda1 99.9 11 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 10 c2w8bB_ 99.9 13 PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal 11 c3c5mC_ 99.9 11 PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 12 d1orva1 99.9 10 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 13 c3bwsA_ 99.9 11 PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 14 d2bgra1 99.9 9 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 15 d1nira2 99.9 10 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 16 c2ivzD_ 99.9 12 PDB header:protein transport/hydrolase Chain: D: PDB Molecule:protein tolb; PDBTitle: structure of tolb in complex with a peptide of the colicin2 e9 t-domain 17 c1gq1B_ 99.9 13 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form 18 c2oajA_ 99.9 14 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae 19 c3jroA_ 99.9 13 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 20 d1qksa2 99.9 10 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 21 c3mkqA_ not modelled 99.9 9 PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat 22 c1nnoA_ not modelled 99.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa 23 d1gxra_ not modelled 99.9 13 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 24 d1jmxb_ not modelled 99.9 13 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 25 c1xfdD_ not modelled 99.9 11 PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family 26 c2ecfA_ not modelled 99.9 15 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase iv; PDBTitle: crystal structure of dipeptidyl aminopeptidase iv from2 stenotrophomonas maltophilia 27 c1z68A_ not modelled 99.9 12 PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha 28 c2pm9A_ not modelled 99.9 13 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat 29 c2qtbB_ not modelled 99.9 9 PDB header:hydrolase Chain: B: PDB Molecule:dipeptidyl peptidase 4; PDBTitle: human dipeptidyl peptidase iv/cd26 in complex with a 4-aryl2 cyclohexylalanine inhibitor 30 c2g5tA_ not modelled 99.9 8 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase 4; PDBTitle: crystal structure of human dipeptidyl peptidase iv (dppiv)2 complexed with cyanopyrrolidine (c5-pro-pro) inhibitor 21ag 31 c3fgbB_ not modelled 99.9 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn; PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b. 32 c1r5mA_ not modelled 99.9 7 PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 33 c2eepA_ not modelled 99.9 14 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl aminopeptidase iv, putative; PDBTitle: prolyl tripeptidyl aminopeptidase complexed with an inhibitor 34 c3ei4D_ not modelled 99.9 15 PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex 35 d1k32a2 not modelled 99.9 14 Fold:6-bladed beta-propeller Superfamily:Tricorn protease N-terminal domain Family:Tricorn protease N-terminal domain 36 c2j04B_ not modelled 99.9 12 PDB header:transcription Chain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic 37 c2j57J_ not modelled 99.9 13 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin. 38 c2i0tB_ not modelled 99.9 12 PDB header:oxidoreductase Chain: B: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase 39 d2hqsa1 not modelled 99.9 9 Fold:6-bladed beta-propeller Superfamily:TolB, C-terminal domain Family:TolB, C-terminal domain 40 c2h47F_ not modelled 99.9 13 PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 41 c3dw8B_ not modelled 99.8 11 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2a 55 kda regulatory PDBTitle: structure of a protein phosphatase 2a holoenzyme with b55 subunit 42 c2gopB_ not modelled 99.8 9 PDB header:hydrolase Chain: B: PDB Molecule:trilobed protease; PDBTitle: the beta-propeller domain of the trilobed protease from pyrococcus2 furiosus reveals an open velcro topology 43 d1fwxa2 not modelled 99.8 7 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 44 d1erja_ not modelled 99.8 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 45 c3ei3B_ not modelled 99.8 12 PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex 46 d1yfqa_ not modelled 99.8 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:Cell cycle arrest protein BUB3 47 c2ojhA_ not modelled 99.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1656/agr_c_3050; PDBTitle: the structure of putative tolb from agrobacterium tumefaciens 48 c2pbiB_ not modelled 99.8 14 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta 5; PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure 49 d2madh_ not modelled 99.8 12 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 50 d2bbkh_ not modelled 99.8 12 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 51 c3c75J_ not modelled 99.8 10 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin 52 c3acpA_ not modelled 99.8 11 PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome 53 c2w18A_ not modelled 99.8 11 PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 54 c1qniE_ not modelled 99.8 12 PDB header:oxidoreductase Chain: E: PDB Molecule:nitrous-oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution 55 c3fm0A_ not modelled 99.8 13 PDB header:biosynthetic protein Chain: A: PDB Molecule:protein ciao1; PDBTitle: crystal structure of wd40 protein ciao1 56 d1nr0a1 not modelled 99.8 15 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 57 c3i2nA_ not modelled 99.8 14 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 92; PDBTitle: crystal structure of wd40 repeats protein wdr92 58 d1ospo_ not modelled 99.8 6 Fold:open-sided beta-meander Superfamily:Outer surface protein Family:Outer surface protein 59 d1tbga_ not modelled 99.8 11 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 60 d1qnia2 not modelled 99.8 11 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 61 c3jzhA_ not modelled 99.8 11 PDB header:gene regulation Chain: A: PDB Molecule:polycomb protein eed; PDBTitle: eed-h3k79me3 62 d1l0qa2 not modelled 99.8 13 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:YVTN repeat 63 c2xznR_ not modelled 99.8 12 PDB header:ribosome Chain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 64 d1nexb2 not modelled 99.8 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 65 c3u4yA_ not modelled 99.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771. 66 c3hfqB_ not modelled 99.8 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. 67 c2gnqA_ not modelled 99.8 13 PDB header:transcription Chain: A: PDB Molecule:wd-repeat protein 5; PDBTitle: structure of wdr5 68 c3mmyE_ not modelled 99.8 9 PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 69 c2qxvA_ not modelled 99.8 12 PDB header:gene regulation Chain: A: PDB Molecule:embryonic ectoderm development; PDBTitle: structural basis of ezh2 recognition by eed 70 c3iz6a_ not modelled 99.8 11 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 71 c4a11B_ not modelled 99.8 12 PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex 72 c3frxB_ not modelled 99.8 13 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta- PDBTitle: crystal structure of the yeast orthologue of rack1, asc1. 73 c3jrpA_ not modelled 99.8 7 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: sec13 with nup145c (aa109-179) insertion blade 74 d1pgua1 not modelled 99.8 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 75 d2ovrb2 not modelled 99.8 8 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 76 d1vyhc1 not modelled 99.7 7 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 77 c3eg6A_ not modelled 99.7 12 PDB header:protein binding Chain: A: PDB Molecule:wd repeat-containing protein 5; PDBTitle: structure of wdr5 bound to mll1 peptide 78 c1fwxB_ not modelled 99.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans 79 c1vyhT_ not modelled 99.7 7 PDB header:hydrolase Chain: T: PDB Molecule:platelet-activating factor acetylhydrolase ib PDBTitle: paf-ah holoenzyme: lis1/alfa2 80 c1nexD_ not modelled 99.7 11 PDB header:ligase, cell cycle Chain: D: PDB Molecule:cdc4 protein; PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex 81 d1k8kc_ not modelled 99.7 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 82 d1sq9a_ not modelled 99.7 10 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 83 c2ovqB_ not modelled 99.7 12 PDB header:transcription/cell cycle Chain: B: PDB Molecule:f-box/wd repeat protein 7; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 84 c3dwlH_ not modelled 99.7 12 PDB header:structural protein Chain: H: PDB Molecule:actin-related protein 2/3 complex subunit 1; PDBTitle: crystal structure of fission yeast arp2/3 complex lacking the arp22 subunit 85 d1pbyb_ not modelled 99.7 12 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 86 c2vduB_ not modelled 99.7 13 PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(7)-)-methyltransferase- PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex 87 d1ri6a_ not modelled 99.7 12 Fold:7-bladed beta-propeller Superfamily:Putative isomerase YbhE Family:Putative isomerase YbhE 88 c3fhcA_ not modelled 99.7 12 PDB header:transport protein/hydrolase Chain: A: PDB Molecule:nuclear pore complex protein nup214; PDBTitle: crystal structure of human dbp5 in complex with nup214 89 c3vh0C_ not modelled 99.7 13 PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna 90 d1tl2a_ not modelled 99.7 12 Fold:5-bladed beta-propeller Superfamily:Tachylectin-2 Family:Tachylectin-2 91 c3ow8A_ not modelled 99.7 9 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 61; PDBTitle: crystal structure of the wd repeat-containing protein 61 92 d1qfma1 not modelled 99.7 12 Fold:7-bladed beta-propeller Superfamily:Peptidase/esterase 'gauge' domain Family:Prolyl oligopeptidase, N-terminal domain 93 c3g4hB_ not modelled 99.7 16 PDB header:hydrolase Chain: B: PDB Molecule:regucalcin; PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound) 94 d1nr0a2 not modelled 99.7 8 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 95 c3greA_ not modelled 99.7 13 PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain 96 c3lrvA_ not modelled 99.7 11 PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. 97 c2hu7A_ not modelled 99.6 20 PDB header:hydrolase Chain: A: PDB Molecule:acylamino-acid-releasing enzyme; PDBTitle: binding of inhibitors by acylaminoacyl peptidase 98 c1yr2A_ not modelled 99.6 13 PDB header:hydrolase Chain: A: PDB Molecule:prolyl oligopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity 99 c2aq5A_ not modelled 99.6 10 PDB header:structural protein Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of murine coronin-1 100 c3odtB_ not modelled 99.6 7 PDB header:nuclear protein Chain: B: PDB Molecule:protein doa1; PDBTitle: crystal structure of wd40 beta propeller domain of doa1 101 c2bklB_ not modelled 99.6 13 PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity 102 c3sbrF_ not modelled 99.6 11 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate 103 c1qfmA_ not modelled 99.5 13 PDB header:hydrolase Chain: A: PDB Molecule:protein (prolyl oligopeptidase); PDBTitle: prolyl oligopeptidase from porcine muscle 104 c3e5zA_ not modelled 99.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 105 c2g8sB_ not modelled 99.5 11 PDB header:sugar binding protein Chain: B: PDB Molecule:glucose/sorbosone dehydrogenases; PDBTitle: crystal structure of the soluble aldose sugar dehydrogenase2 (asd) from escherichia coli in the apo-form 106 c2hesX_ not modelled 99.5 11 PDB header:biosynthetic protein Chain: X: PDB Molecule:ydr267cp; PDBTitle: cytosolic iron-sulphur assembly protein- 1 107 c3cfvA_ not modelled 99.5 14 PDB header:histone/chaperone Chain: A: PDB Molecule:histone-binding protein rbbp7; PDBTitle: structural basis of the interaction of rbap46/rbap48 with2 histone h4 108 c2pm7B_ not modelled 99.5 14 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec13; PDBTitle: crystal structure of yeast sec13/31 edge element of the2 copii vesicular coat, selenomethionine version 109 c2zkqa_ not modelled 99.5 12 PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 110 c3bg1E_ not modelled 99.5 10 PDB header:protein transport, hydrolase Chain: E: PDB Molecule:protein sec13 homolog; PDBTitle: architecture of a coat for the nuclear pore membrane 111 c1p22A_ not modelled 99.4 9 PDB header:signaling protein Chain: A: PDB Molecule:f-box/wd-repeat protein 1a; PDBTitle: structure of a beta-trcp1-skp1-beta-catenin complex:2 destruction motif binding and lysine specificity on the3 scfbeta-trcp1 ubiquitin ligase 112 c2oitA_ not modelled 99.4 15 PDB header:oncoprotein Chain: A: PDB Molecule:nucleoporin 214kda; PDBTitle: crystal structure of the n-terminal domain of the human2 proto-oncogene nup214/can 113 d2dg1a1 not modelled 99.4 9 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 114 c3azqA_ not modelled 99.4 15 PDB header:hydrolase Chain: A: PDB Molecule:aminopeptidase; PDBTitle: crystal structure of puromycin hydrolase s511a mutant complexed with2 pgg 115 c3eweC_ not modelled 99.4 9 PDB header:protein transport,structural protein Chain: C: PDB Molecule:nucleoporin seh1; PDBTitle: crystal structure of the nup85/seh1 complex 116 c3iumA_ not modelled 99.4 10 PDB header:hydrolase Chain: A: PDB Molecule:prolyl endopeptidase; PDBTitle: appep_wtx opened state 117 c3dr2A_ not modelled 99.4 13 PDB header:hydrolase Chain: A: PDB Molecule:exported gluconolactonase; PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways 118 d1pgua2 not modelled 99.3 10 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 119 d2p4oa1 not modelled 99.3 10 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:All0351-like 120 d1pjxa_ not modelled 99.3 11 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0