BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (80 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P32696 Uncharacterized protein yjbO n=122 Tax=Enterobac... 151 5e-36 UniRef50_D0KLN9 Phage shock protein G n=5 Tax=Pectobacterium Rep... 87 2e-16 UniRef50_C6CKU2 Phage shock protein G n=1 Tax=Dickeya zeae Ech15... 84 2e-15 UniRef50_D2T8L4 Uncharacterized protein yjbO n=2 Tax=Erwinia pyr... 82 6e-15 UniRef50_D2BVX8 Phage shock protein G n=1 Tax=Dickeya dadantii E... 77 1e-13 UniRef50_D0I8N8 Putative inner membrane protein n=1 Tax=Grimonti... 63 2e-09 UniRef50_Q2BYQ3 Putative uncharacterized protein n=4 Tax=Photoba... 55 7e-07 UniRef50_A3Y307 Phage shock protein G n=24 Tax=Vibrionales RepID... 49 6e-05 UniRef50_C9P9C6 Putative uncharacterized protein n=1 Tax=Vibrio ... 44 0.002 >UniRef50_P32696 Uncharacterized protein yjbO n=122 Tax=Enterobacteriaceae RepID=YJBO_ECOLI Length = 80 Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 80/80 (100%), Positives = 80/80 (100%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV Sbjct: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 Query: 61 IKAIKAPKVPKYQRYDRWRY 80 IKAIKAPKVPKYQRYDRWRY Sbjct: 61 IKAIKAPKVPKYQRYDRWRY 80 >UniRef50_D0KLN9 Phage shock protein G n=5 Tax=Pectobacterium RepID=D0KLN9_PECWW Length = 90 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 43/80 (53%), Positives = 58/80 (72%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 MLE+ FVIGFF+MLM+TGVSLLG+IAAL VA+ M +GG+ ++ IK+LPWL+LA+A VW+ Sbjct: 1 MLEIFFVIGFFIMLMLTGVSLLGVIAALFVASLFMLIGGLFSMAIKVLPWLILAVAAVWL 60 Query: 61 IKAIKAPKVPKYQRYDRWRY 80 + V RY +Y Sbjct: 61 WRKFSGRPVYNSHRYTYQKY 80 >UniRef50_C6CKU2 Phage shock protein G n=1 Tax=Dickeya zeae Ech1591 RepID=C6CKU2_DICZE Length = 91 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 5/85 (5%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 MLE+ FVIGFF+ML+VTGVSLLG++AALVVA +M + G+ LMIK+LPWLLLAI VVW+ Sbjct: 1 MLEIFFVIGFFIMLLVTGVSLLGVMAALVVAAIVMLVAGLFTLMIKVLPWLLLAIVVVWL 60 Query: 61 IKAIKA--PKVPKYQRYD---RWRY 80 + + + Y RY WR+ Sbjct: 61 WRRYQGQPSRTVGYYRYRAKYDWRH 85 >UniRef50_D2T8L4 Uncharacterized protein yjbO n=2 Tax=Erwinia pyrifoliae RepID=D2T8L4_ERWPY Length = 106 Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 39/73 (53%), Positives = 58/73 (79%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 M E+LFV+GFF L++TG+SLLGI+AAL+VAT + F+GG+ A+++KLLPWL+LA+ VW+ Sbjct: 30 MFEILFVVGFFTALLLTGISLLGIMAALLVATLVTFIGGLFAIVVKLLPWLVLAVVAVWL 89 Query: 61 IKAIKAPKVPKYQ 73 +A P+V + Sbjct: 90 YRAFVKPRVRDKE 102 >UniRef50_D2BVX8 Phage shock protein G n=1 Tax=Dickeya dadantii Ech586 RepID=D2BVX8_DICD5 Length = 92 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/79 (50%), Positives = 56/79 (70%), Gaps = 2/79 (2%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 MLE+ FV+GFF+ML+VTGVSLLG++ AL+ A +M + G+ + IK+LPWLLLAI VVW+ Sbjct: 1 MLEIFFVMGFFIMLVVTGVSLLGVMVALIAAAIVMLIAGLFTMAIKVLPWLLLAIVVVWL 60 Query: 61 IKAIKAPKVPK--YQRYDR 77 + + P Y RY + Sbjct: 61 WRRYQGPGAASTPYGRYRK 79 >UniRef50_D0I8N8 Putative inner membrane protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I8N8_VIBHO Length = 88 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 47/63 (74%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 M+E LF++GF + L+ TG+S LGI+AA+ V +M L GM+ L+ K+LPW++LA +VW+ Sbjct: 1 MVEFLFIVGFTIALLATGISFLGILAAMAVGFIVMALAGMIGLVFKMLPWIILAAVIVWL 60 Query: 61 IKA 63 +K Sbjct: 61 LKG 63 >UniRef50_Q2BYQ3 Putative uncharacterized protein n=4 Tax=Photobacterium RepID=Q2BYQ3_9GAMM Length = 80 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 3/80 (3%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 M E LF++ F ++L+ TGVS++G++ A+ AIM + GML L+IKLLPW++L +W+ Sbjct: 1 MFEFLFLLTFALVLVFTGVSIIGMMIAVAAGFAIMAVVGMLGLVIKLLPWIVLIAIAIWL 60 Query: 61 IKAIKAPKVPKYQ-RYDRWR 79 ++ K KV Y+ R R R Sbjct: 61 VRDNK--KVQDYKDRLSRTR 78 >UniRef50_A3Y307 Phage shock protein G n=24 Tax=Vibrionales RepID=A3Y307_9VIBR Length = 73 Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 M EL+FV+ F L+VTG++ + ++AA +A A+M + GM+ ++ KLLPWL++ VW Sbjct: 1 MFELIFVLIFVATLLVTGITFMTVLAATGIALAVMLVLGMMGVVFKLLPWLIVIAVGVWF 60 Query: 61 IKA-IKAPKVPKY 72 K + + +Y Sbjct: 61 FKNYVHSSNQRRY 73 >UniRef50_C9P9C6 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9P9C6_VIBFU Length = 70 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 46/71 (64%), Gaps = 2/71 (2%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 M+EL+F++ F L+VTG+++ G + A+ VA ++ L +L +KLLPWL++ VWV Sbjct: 2 MVELIFILVFVASLLVTGLTVFGTLVAIAVAFGVLMLLSLLGFALKLLPWLIVIALGVWV 61 Query: 61 IKAIKAPKVPK 71 + + ++P+ Sbjct: 62 YRHYQ--QIPR 70 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D0KLN9 Phage shock protein G n=5 Tax=Pectobacterium Rep... 72 4e-12 UniRef50_D2BVX8 Phage shock protein G n=1 Tax=Dickeya dadantii E... 66 3e-10 UniRef50_C6CKU2 Phage shock protein G n=1 Tax=Dickeya zeae Ech15... 65 8e-10 UniRef50_P32696 Uncharacterized protein yjbO n=122 Tax=Enterobac... 63 2e-09 UniRef50_D2T8L4 Uncharacterized protein yjbO n=2 Tax=Erwinia pyr... 55 8e-07 UniRef50_Q2BYQ3 Putative uncharacterized protein n=4 Tax=Photoba... 54 2e-06 UniRef50_D0I8N8 Putative inner membrane protein n=1 Tax=Grimonti... 52 5e-06 UniRef50_A3Y307 Phage shock protein G n=24 Tax=Vibrionales RepID... 50 2e-05 UniRef50_C9P9C6 Putative uncharacterized protein n=1 Tax=Vibrio ... 48 7e-05 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_D0KLN9 Phage shock protein G n=5 Tax=Pectobacterium RepID=D0KLN9_PECWW Length = 90 Score = 72.3 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 43/80 (53%), Positives = 58/80 (72%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 MLE+ FVIGFF+MLM+TGVSLLG+IAAL VA+ M +GG+ ++ IK+LPWL+LA+A VW+ Sbjct: 1 MLEIFFVIGFFIMLMLTGVSLLGVIAALFVASLFMLIGGLFSMAIKVLPWLILAVAAVWL 60 Query: 61 IKAIKAPKVPKYQRYDRWRY 80 + V RY +Y Sbjct: 61 WRKFSGRPVYNSHRYTYQKY 80 >UniRef50_D2BVX8 Phage shock protein G n=1 Tax=Dickeya dadantii Ech586 RepID=D2BVX8_DICD5 Length = 92 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 40/79 (50%), Positives = 56/79 (70%), Gaps = 2/79 (2%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 MLE+ FV+GFF+ML+VTGVSLLG++ AL+ A +M + G+ + IK+LPWLLLAI VVW+ Sbjct: 1 MLEIFFVMGFFIMLVVTGVSLLGVMVALIAAAIVMLIAGLFTMAIKVLPWLLLAIVVVWL 60 Query: 61 IKAIKAPKVPK--YQRYDR 77 + + P Y RY + Sbjct: 61 WRRYQGPGAASTPYGRYRK 79 >UniRef50_C6CKU2 Phage shock protein G n=1 Tax=Dickeya zeae Ech1591 RepID=C6CKU2_DICZE Length = 91 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 43/77 (55%), Positives = 55/77 (71%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 MLE+ FVIGFF+ML+VTGVSLLG++AALVVA +M + G+ LMIK+LPWLLLAI VVW+ Sbjct: 1 MLEIFFVIGFFIMLLVTGVSLLGVMAALVVAAIVMLVAGLFTLMIKVLPWLLLAIVVVWL 60 Query: 61 IKAIKAPKVPKYQRYDR 77 + + Y Sbjct: 61 WRRYQGQPSRTVGYYRY 77 >UniRef50_P32696 Uncharacterized protein yjbO n=122 Tax=Enterobacteriaceae RepID=YJBO_ECOLI Length = 80 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 80/80 (100%), Positives = 80/80 (100%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV Sbjct: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 Query: 61 IKAIKAPKVPKYQRYDRWRY 80 IKAIKAPKVPKYQRYDRWRY Sbjct: 61 IKAIKAPKVPKYQRYDRWRY 80 >UniRef50_D2T8L4 Uncharacterized protein yjbO n=2 Tax=Erwinia pyrifoliae RepID=D2T8L4_ERWPY Length = 106 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 39/73 (53%), Positives = 58/73 (79%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 M E+LFV+GFF L++TG+SLLGI+AAL+VAT + F+GG+ A+++KLLPWL+LA+ VW+ Sbjct: 30 MFEILFVVGFFTALLLTGISLLGIMAALLVATLVTFIGGLFAIVVKLLPWLVLAVVAVWL 89 Query: 61 IKAIKAPKVPKYQ 73 +A P+V + Sbjct: 90 YRAFVKPRVRDKE 102 >UniRef50_Q2BYQ3 Putative uncharacterized protein n=4 Tax=Photobacterium RepID=Q2BYQ3_9GAMM Length = 80 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 51/80 (63%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 M E LF++ F ++L+ TGVS++G++ A+ AIM + GML L+IKLLPW++L +W+ Sbjct: 1 MFEFLFLLTFALVLVFTGVSIIGMMIAVAAGFAIMAVVGMLGLVIKLLPWIVLIAIAIWL 60 Query: 61 IKAIKAPKVPKYQRYDRWRY 80 ++ K + K + RY Sbjct: 61 VRDNKKVQDYKDRLSRTRRY 80 >UniRef50_D0I8N8 Putative inner membrane protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I8N8_VIBHO Length = 88 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 47/63 (74%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 M+E LF++GF + L+ TG+S LGI+AA+ V +M L GM+ L+ K+LPW++LA +VW+ Sbjct: 1 MVEFLFIVGFTIALLATGISFLGILAAMAVGFIVMALAGMIGLVFKMLPWIILAAVIVWL 60 Query: 61 IKA 63 +K Sbjct: 61 LKG 63 >UniRef50_A3Y307 Phage shock protein G n=24 Tax=Vibrionales RepID=A3Y307_9VIBR Length = 73 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 43/73 (58%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 M EL+FV+ F L+VTG++ + ++AA +A A+M + GM+ ++ KLLPWL++ VW Sbjct: 1 MFELIFVLIFVATLLVTGITFMTVLAATGIALAVMLVLGMMGVVFKLLPWLIVIAVGVWF 60 Query: 61 IKAIKAPKVPKYQ 73 K + Sbjct: 61 FKNYVHSSNQRRY 73 >UniRef50_C9P9C6 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9P9C6_VIBFU Length = 70 Score = 48.4 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 42/65 (64%) Query: 1 MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALMIKLLPWLLLAIAVVWV 60 M+EL+F++ F L+VTG+++ G + A+ VA ++ L +L +KLLPWL++ VWV Sbjct: 2 MVELIFILVFVASLLVTGLTVFGTLVAIAVAFGVLMLLSLLGFALKLLPWLIVIALGVWV 61 Query: 61 IKAIK 65 + + Sbjct: 62 YRHYQ 66 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.330 0.148 0.440 Lambda K H 0.267 0.0452 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 309,000,609 Number of Sequences: 3077464 Number of extensions: 9658265 Number of successful extensions: 149421 Number of sequences better than 1.0e-01: 25 Number of HSP's better than 0.1 without gapping: 25 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 149384 Number of HSP's gapped (non-prelim): 43 length of query: 80 length of database: 1,040,396,356 effective HSP length: 51 effective length of query: 29 effective length of database: 883,445,692 effective search space: 25619925068 effective search space used: 25619925068 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.3 bits) S2: 87 (38.0 bits)