220 d1r88a_ Probab=98.69   E-value=2.3e-06  Score=52.16  Aligned_columns=220  Identities=15%

Q ss_pred             EEEEEEECCCCCCCCCEEEEECCCCC--CHHHHHHH---HHHHHC-CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             47899954788888875999875899--88899999---998848-9889995489984533566678699999889998
Q batch____         2 KLNIRAQTAQNQHNNSPIVLVHGLFG--SLDNLGVL---ARDLVN-DHNIIQVDMRNHGLSPRDPVMNYPAMAQDLVDTL   75 (254)
Q Consensus         2 kL~y~~~~~~~~~~~p~ivllHG~~~--~~~~~~~~---~~~L~~-~~~vi~~D~~G~G~s~~~~~~~~~~~~~~~~~~~   75 (254)
                      ++.+++..|++    |+|+||||.++  +...|...   .+.+.+ ++-|+.++....+............+...+...+
T Consensus        17 ~~~~~v~~p~~----p~l~lLHG~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~el   92 (267)
T d1r88a_          17 DIPVAFLAGGP----HAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTNWEQDGSKQWDTFLSAEL   92 (267)
T ss_dssp             EEEEEEECCSS----SEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTTSBCSSCTTCBHHHHHHTHH
T ss_pred             EEEEEEEECCC----CEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             46899981899----79999887899988321233210899983289489726788776898744555444588999989


Q ss_pred             HH-------HCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             63-------21465433322222211111000011011642786066786431014557998875200000123567787
Q batch____        76 DA-------QQIDKATFIGHSMGGKAVMALTALASDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAI  148 (254)
Q Consensus        76 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (254)
                      ..       .......+.|.|+|+..+...+..+++.....+..++..................................
T Consensus        93 ~~~~~~~~~~~~~~~~i~G~S~GG~~Al~la~~~Pd~f~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (267)
T d1r88a_          93 PDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQL  172 (267)
T ss_dssp             HHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHHHHHHHHHHHCCCTHHHHCCGGG
T ss_pred             HHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHCHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCHHCCCCCCH
T ss_conf             99888745998585899997878999999999780002301111434455576652002344431022320100377536


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEECCCCCCCC----------------HH
Q ss_conf             31016988899999997541122212576675320121012100246430124015687578----------------99
Q batch____       149 MRQHLNEEGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVS----------------EQ  212 (254)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~D~~~~----------------~~  212 (254)
                      ..                            ..................++.+..+..|...+                ..
T Consensus       173 ~~----------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (267)
T d1r88a_         173 GR----------------------------WKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMF  224 (267)
T ss_dssp             ST----------------------------TGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHH
T ss_pred             HH----------------------------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             88----------------------------86410322244420268238973178766566100010135544323899


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCC--HHHHCHHHHHHHHHHHHC
Q ss_conf             99999997799799998889758--657289999999999843
Q batch____       213 YRDDLLAQFPQARAHVIAGAGHW--VHAEKPDAVLRAIRRYLN  253 (254)
Q Consensus       213 ~~~~~~~~~~~~~~~~i~~~gH~--~~~e~p~~~~~~i~~FL~  253 (254)
                      ..+.+...-.++++.++++.+|.  ...+.=.++...|.++|+
T Consensus       225 ~~~~~~~~g~~~~~~~~~~G~H~w~~W~~~l~~~~~~l~~~l~  267 (267)
T d1r88a_         225 YNQYRSVGGHNGHFDFPASGDNGWGSWAPQLGAMSGDIVGAIR  267 (267)
T ss_dssp             HHHHHHTTCCSEEEECCSSCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999983899389999886775737889999999999875609