BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (251 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P62538 Replication initiation protein n=30 Tax=root Rep... 498 e-140 UniRef50_C8Q373 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b... 271 2e-71 UniRef50_C5K6V2 Putative uncharacterized protein n=1 Tax=Perkins... 164 2e-39 UniRef50_Q6LPZ0 Hypothetical replication initiation protein n=1 ... 163 5e-39 UniRef50_P18351 Uncharacterized 27.6 kDa protein n=19 Tax=root R... 118 1e-25 UniRef50_Q46146 RepA n=3 Tax=root RepID=Q46146_9GAMM 110 5e-23 UniRef50_C6RSQ0 Replicase n=4 Tax=Acinetobacter RepID=C6RSQ0_ACIRA 100 7e-20 UniRef50_C5SD11 Initiator RepB protein n=2 Tax=Allochromatium vi... 94 3e-18 UniRef50_C5S4L5 Replication protein n=3 Tax=Pasteurellaceae RepI... 94 5e-18 UniRef50_B5EWH3 Plasmid replication protein n=2 Tax=Enterobacter... 93 7e-18 UniRef50_C0VLN3 Replication protein n=6 Tax=Acinetobacter RepID=... 93 9e-18 UniRef50_A3MAB7 DNA replication protein n=29 Tax=cellular organi... 92 1e-17 UniRef50_A7M7E8 RepA n=5 Tax=Enterobacteriaceae RepID=A7M7E8_9ENTR 92 1e-17 UniRef50_C6RK77 DNA replication protein n=2 Tax=Acinetobacter ra... 91 4e-17 UniRef50_D0V0D3 RepA n=1 Tax=Moraxella bovis RepID=D0V0D3_MORBO 88 3e-16 UniRef50_A7FCM5 Plasmid replication protein n=1 Tax=Yersinia pse... 87 4e-16 UniRef50_Q2LA81 Replication initiator-like protein n=1 Tax=Larib... 86 1e-15 UniRef50_B0VVG2 Replication protein n=4 Tax=Acinetobacter RepID=... 85 2e-15 UniRef50_B0VVF3 DNA replication protein n=7 Tax=Acinetobacter Re... 85 3e-15 UniRef50_D2TVA4 Plasmid replication protein n=2 Tax=Enterobacter... 84 5e-15 UniRef50_C8PV39 DNA replication protein n=1 Tax=Enhydrobacter ae... 84 5e-15 UniRef50_C8PXW7 DNA replication protein n=1 Tax=Enhydrobacter ae... 84 6e-15 UniRef50_C5SDE1 Initiator RepB protein n=1 Tax=Allochromatium vi... 83 1e-14 UniRef50_B3AF43 Plasmid replication protein n=4 Tax=Enterobacter... 82 1e-14 UniRef50_D0SHJ5 DNA replication protein n=1 Tax=Acinetobacter jo... 81 4e-14 UniRef50_C8PWL8 DNA replication protein n=1 Tax=Enhydrobacter ae... 78 3e-13 UniRef50_D0T0I0 DNA replication protein n=4 Tax=Acinetobacter Re... 78 3e-13 UniRef50_Q3IEM2 Putative RepA n=1 Tax=Pseudoalteromonas haloplan... 77 4e-13 UniRef50_Q1Q7S1 Initiator RepB protein n=3 Tax=Bacteria RepID=Q1... 77 5e-13 UniRef50_D0WD49 Initiator RepB protein n=3 Tax=Neisseria RepID=D... 77 7e-13 UniRef50_Q2B8G7 Replication initiator protein n=1 Tax=Bacillus s... 77 8e-13 UniRef50_B0VVD6 Putative replication protein n=1 Tax=Acinetobact... 76 1e-12 UniRef50_P95424 Replication initiator protein n=3 Tax=Pseudomona... 75 2e-12 UniRef50_Q0QVX3 PNL18.2_p1 n=2 Tax=Neisseria lactamica RepID=Q0Q... 75 3e-12 UniRef50_D0SRM6 Replicase n=2 Tax=Acinetobacter RepID=D0SRM6_ACIJU 74 3e-12 UniRef50_P17492 Replication protein n=8 Tax=Proteobacteria RepID... 74 5e-12 UniRef50_C9S245 Initiator RepB protein n=7 Tax=Geobacillus RepID... 73 7e-12 UniRef50_A0S0J1 Rep n=2 Tax=Acinetobacter RepID=A0S0J1_9GAMM 73 1e-11 UniRef50_D2QW27 Initiator RepB protein n=1 Tax=Spirosoma lingual... 72 1e-11 UniRef50_A0A1K9 Replication protein n=7 Tax=Enterobacteriaceae R... 72 1e-11 UniRef50_A1U7R0 Initiator RepB protein n=1 Tax=Marinobacter aqua... 72 2e-11 UniRef50_Q6XUP4 RepA n=4 Tax=Pseudomonas RepID=Q6XUP4_9PSED 72 2e-11 UniRef50_A7GJQ6 RepB family protein n=1 Tax=Clostridium botulinu... 70 5e-11 UniRef50_Q6TV38 Putative replication initiator protein n=1 Tax=B... 70 6e-11 UniRef50_UPI0001AF0368 DNA replication protein n=1 Tax=Acinetoba... 69 1e-10 UniRef50_Q2RYM1 Initiator replication protein RepB n=1 Tax=Salin... 68 4e-10 UniRef50_A8V5F5 Replication initiator protein (Fragment) n=2 Tax... 66 9e-10 UniRef50_UPI00004A2E95 putative replication initiator protein n=... 66 1e-09 UniRef50_B6D407 RepA n=1 Tax=Capnocytophaga canimorsus RepID=B6D... 65 3e-09 UniRef50_B1BR22 Initiator RepB protein family n=1 Tax=Clostridiu... 65 3e-09 UniRef50_B5Z4W0 Plasmid replication protein n=1 Tax=Escherichia ... 65 3e-09 UniRef50_C6QRE9 Initiator RepB protein n=1 Tax=Geobacillus sp. Y... 64 4e-09 UniRef50_Q629K5 Replication protein n=2 Tax=Haemophilus somnus 1... 64 6e-09 UniRef50_C6S581 Putative initiator RepB protein n=1 Tax=Neisseri... 64 7e-09 UniRef50_Q8ETT4 Replication protein n=1 Tax=Oceanobacillus iheye... 63 8e-09 UniRef50_Q83Z35 RepB n=4 Tax=Helicobacter pylori RepID=Q83Z35_HELPY 62 1e-08 UniRef50_C8Q107 Replication protein n=2 Tax=Enhydrobacter aerosa... 62 1e-08 UniRef50_Q9X3R7 Replicase n=2 Tax=Riemerella anatipestifer RepID... 62 1e-08 UniRef50_B5A7F5 RepA n=2 Tax=Bacteroides RepID=B5A7F5_BACUN 62 1e-08 UniRef50_A8UX05 Replication initiator protein n=1 Tax=Hydrogeniv... 62 1e-08 UniRef50_Q6J2B8 Replication protein n=2 Tax=Gammaproteobacteria ... 62 2e-08 UniRef50_UPI0001C42EDF initiator RepB protein n=1 Tax=Bacillus p... 62 2e-08 UniRef50_A9VVF2 Initiator RepB protein n=14 Tax=Bacillus cereus ... 62 2e-08 UniRef50_D2QUY6 Initiator RepB protein n=1 Tax=Spirosoma lingual... 62 2e-08 UniRef50_Q52204 Putative plasmid replication protein n=2 Tax=pla... 61 3e-08 UniRef50_C4B6A3 Putative replication protein n=3 Tax=Clostridium... 61 4e-08 UniRef50_B2UKE3 Initiator RepB protein n=2 Tax=Ralstonia pickett... 61 4e-08 UniRef50_Q0QVZ7 Putative replication initiator protein n=2 Tax=N... 60 5e-08 UniRef50_C9A1Q4 Replication protein n=8 Tax=Lactobacillales RepI... 59 1e-07 UniRef50_Q45152 RepA protein n=3 Tax=Bacteroides RepID=Q45152_BACFR 59 1e-07 UniRef50_C4GNB8 Putative uncharacterized protein n=1 Tax=Kingell... 58 2e-07 UniRef50_D0U573 Replication initiation protein RepB-like protein... 58 3e-07 UniRef50_Q4HN85 Initiator RepB protein family n=1 Tax=Campylobac... 58 3e-07 UniRef50_O68836 RepA n=3 Tax=Francisella RepID=O68836_FRATU 58 3e-07 UniRef50_Q83XW3 RepA n=1 Tax=Flavobacterium psychrophilum RepID=... 58 4e-07 UniRef50_Q1PHH6 PCZ2.1 n=1 Tax=Planococcus sp. ZOYM RepID=Q1PHH6... 57 4e-07 UniRef50_B1FHX4 Initiator RepB protein n=2 Tax=Burkholderia ambi... 57 5e-07 UniRef50_Q46088 Replicase n=2 Tax=Bacteria RepID=Q46088_CAMHY 57 6e-07 UniRef50_B9VWK0 Putative replication protein n=1 Tax=Pseudomonas... 56 1e-06 UniRef50_D2QW11 Initiator RepB protein n=2 Tax=Spirosoma lingual... 55 2e-06 UniRef50_Q3HYC5 Rep n=1 Tax=Actinobacillus pleuropneumoniae RepI... 55 3e-06 UniRef50_C8PV51 Replication protein n=1 Tax=Enhydrobacter aerosa... 55 3e-06 UniRef50_Q19N19 Replication initiation protein n=2 Tax=Campyloba... 55 3e-06 UniRef50_Q3ZR50 Putative uncharacterized protein n=1 Tax=Lactoba... 55 3e-06 UniRef50_UPI0001BCE2A8 replication protein B n=1 Tax=Campylobact... 54 3e-06 UniRef50_Q0HPE2 Initiator RepB protein n=2 Tax=Gammaproteobacter... 54 4e-06 UniRef50_Q4L2Y4 Replication protein Rep n=48 Tax=Staphylococcus ... 54 4e-06 UniRef50_C7UIY7 Initiator Replication protein n=9 Tax=Lactobacil... 54 5e-06 UniRef50_Q0SW56 Initiator RepB protein family n=4 Tax=Clostridiu... 54 6e-06 UniRef50_B0V3W3 Putative replication protein n=2 Tax=Acinetobact... 54 6e-06 UniRef50_C9MTU8 Initiator RepB protein n=2 Tax=Bacteroidales Rep... 54 7e-06 UniRef50_Q93NB4 RepB n=11 Tax=Lactobacillales RepID=Q93NB4_9LACT 53 8e-06 UniRef50_A6TSD9 Initiator RepB protein n=1 Tax=Alkaliphilus meta... 52 1e-05 UniRef50_A6DT85 Replication initiator protein n=1 Tax=Lentisphae... 52 1e-05 UniRef50_D1PH89 Initiator RepB protein n=1 Tax=Prevotella copri ... 52 2e-05 UniRef50_A7ZGH9 Putative pNL871104_p1 n=1 Tax=Campylobacter conc... 52 2e-05 UniRef50_Q02V81 Replication initiator protein n=74 Tax=root RepI... 52 2e-05 UniRef50_D2U1L9 Phage transcriptional regulator n=1 Tax=Arsenoph... 52 2e-05 UniRef50_C5H432 Initiator RepB protein family n=1 Tax=Arcobacter... 52 3e-05 UniRef50_Q1CR19 Replication initiation protein A n=18 Tax=Helico... 51 3e-05 UniRef50_A0R878 Initiator RepB protein n=1 Tax=Pelobacter propio... 51 4e-05 UniRef50_Q97TD7 Replication protein, repA n=1 Tax=Clostridium ac... 51 4e-05 UniRef50_Q3T4G0 RepA n=1 Tax=Capnocytophaga ochracea RepID=Q3T4G... 50 5e-05 UniRef50_C6ZBN9 Replication protein n=1 Tax=Bacteroides sp. 4_3_... 50 8e-05 UniRef50_C3RRC7 Putative uncharacterized protein n=1 Tax=Mollicu... 49 1e-04 UniRef50_C9KZX8 Initiator RepB protein n=4 Tax=Bacteroides RepID... 49 1e-04 UniRef50_P22308 Replication initiation protein n=12 Tax=root Rep... 49 2e-04 UniRef50_Q6R586 Replication protein A n=1 Tax=Ornithobacterium r... 49 2e-04 UniRef50_A6XA85 Rep n=1 Tax=Bifidobacterium bifidum RepID=A6XA85... 48 2e-04 UniRef50_C0QUY9 Putative replication initiation protein n=1 Tax=... 48 3e-04 UniRef50_D0UIP0 Replication initiator protein n=1 Tax=Aggregatib... 48 4e-04 UniRef50_Q2A086 Putative replication protein n=1 Tax=Sodalis pha... 47 7e-04 UniRef50_Q06362 ORF195 n=1 Tax=Desulfovibrio desulfuricans RepID... 47 8e-04 UniRef50_UPI00004A2E9C replication protein n=1 Tax=Moraxella bov... 47 9e-04 UniRef50_UPI0001B43BA0 replication protein n=1 Tax=Listeria mono... 46 0.001 UniRef50_Q1PHH9 PCZ1.1 n=3 Tax=Bacillales RepID=Q1PHH9_9BACL 45 0.002 UniRef50_D2QVZ6 Initiator RepB protein n=1 Tax=Spirosoma lingual... 45 0.002 UniRef50_UPI000197AD3E hypothetical protein BACCOPRO_01779 n=1 T... 45 0.003 UniRef50_B5TTF0 Putative uncharacterized protein rep n=3 Tax=env... 45 0.003 UniRef50_D1PMT8 Putative replication initiator protein n=1 Tax=S... 44 0.004 UniRef50_O87353 Replication protein Rep n=2 Tax=Staphylococcus R... 44 0.005 UniRef50_B0V3Y6 Putative replication protein n=2 Tax=Acinetobact... 44 0.005 UniRef50_B6YS87 Replication protein A n=4 Tax=Candidatus Azobact... 44 0.005 UniRef50_D2QVG7 Initiator RepB protein n=1 Tax=Spirosoma lingual... 44 0.006 UniRef50_Q8VQM9 Replication protein n=2 Tax=Prevotella RepID=Q8V... 43 0.010 UniRef50_Q8GN68 RepB n=6 Tax=Bifidobacterium longum RepID=Q8GN68... 43 0.011 UniRef50_B7LJA1 PI protein (Replication initiation protein) n=1 ... 43 0.013 UniRef50_Q9LAL2 Putative uncharacterized protein n=1 Tax=Moraxel... 42 0.014 UniRef50_A1ZVZ5 Initiator RepB protein n=1 Tax=Microscilla marin... 42 0.020 UniRef50_C0EYN5 Putative uncharacterized protein n=1 Tax=Eubacte... 41 0.037 UniRef50_UPI0001979AA2 putative pNL871104_p1 n=1 Tax=Helicobacte... 41 0.048 UniRef50_B9ECE7 Plasmid replication initiation protein n=1 Tax=M... 40 0.050 >UniRef50_P62538 Replication initiation protein n=30 Tax=root RepID=REPE2_ECOLX Length = 251 Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust. Identities = 236/249 (94%), Positives = 243/249 (97%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 MAE AVINHKKRKNSPRIVQSN+LTEAAYSLSRDQKR+LYLFV QIRKSDG+LQEHDGIC Sbjct: 1 MAEIAVINHKKRKNSPRIVQSNELTEAAYSLSRDQKRLLYLFVHQIRKSDGSLQEHDGIC 60 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 EIHVAKYAE FGLTSAEASKDIRQALK FAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH Sbjct: 61 EIHVAKYAETFGLTSAEASKDIRQALKGFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG+ Sbjct: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGV 180 Query: 181 VSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 VSLKIDWI+ERYQLPQSYQRMPDFRRRFL+ V+EINSRTPMRLSYIEKKKGRQTTHIVF Sbjct: 181 VSLKIDWIMERYQLPQSYQRMPDFRRRFLKASVDEINSRTPMRLSYIEKKKGRQTTHIVF 240 Query: 241 SFRDITSMT 249 SFRDITSMT Sbjct: 241 SFRDITSMT 249 >UniRef50_C8Q373 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q373_9ENTR Length = 248 Score = 271 bits (692), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 122/226 (53%), Positives = 164/226 (72%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I QSN++TEAAY L+RDQKR+L+L V +IR + + G+CE VA+YA+++ L S E Sbjct: 21 IAQSNEMTEAAYHLTRDQKRILFLAVGRIRNATKGGDKSAGLCEFTVAEYADMYNLPSTE 80 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 ASKDIR AL FA KEV +RPEED G+EKG E +PW IK+A+SP RG Y VH+NPYL+P Sbjct: 81 ASKDIRNALAGFAAKEVCIFRPEEDEGNEKGSEVYPWMIKKAYSPRRGTYIVHLNPYLMP 140 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 FF L+ RFT+ ++ + ITNPYA+RLYESLCQY+ +GSG L ++W+IERY LP+S Sbjct: 141 FFTSLEKRFTKIKIKDVAGITNPYAIRLYESLCQYKNAEGSGFAVLGVEWMIERYGLPKS 200 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 Y +M +F+R FL V EI +T M ++Y EKK G + TH F+++ Sbjct: 201 YLKMAEFKRGFLVKAVKEIKEKTHMTITYSEKKSGNRITHFQFTYQ 246 >UniRef50_C5K6V2 Putative uncharacterized protein n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5K6V2_9ALVE Length = 151 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/79 (100%), Positives = 79/79 (100%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC Sbjct: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 Query: 61 EIHVAKYAEIFGLTSAEAS 79 EIHVAKYAEIFGLTSAEAS Sbjct: 61 EIHVAKYAEIFGLTSAEAS 79 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 72/74 (97%), Positives = 73/74 (98%) Query: 178 SGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 + IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH Sbjct: 78 ASIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 137 Query: 238 IVFSFRDITSMTTG 251 IVFSFRDITSMTTG Sbjct: 138 IVFSFRDITSMTTG 151 >UniRef50_Q6LPZ0 Hypothetical replication initiation protein n=1 Tax=Photobacterium profundum RepID=Q6LPZ0_PHOPR Length = 246 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 139/243 (57%), Gaps = 8/243 (3%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI-CEIHVAKYAEI 70 +K+ I Q+N LT AAY+L+R++KR++Y+ +D I E +I+ YA I Sbjct: 6 KKSDIIIRQANALTSAAYNLTRNEKRLVYIALDDIINKRIQCNEFGQYPVKINHIDYASI 65 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 F S +DI + S KEV+FYRP+ED G + ++ W KR++ S G +V Sbjct: 66 FEDDSENIGQDILKLTASLNKKEVIFYRPDEDIG-KNALDAISWTTKRSYRASLGATTVF 124 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 N L+ + FT+F + E + +PYAMRLYESL Q+ PD V+L++DW+IE Sbjct: 125 FNAELVNIITKVDTNFTRFLMGEAGRLNSPYAMRLYESLQQW--PDQQS-VTLEVDWMIE 181 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIE---KKKGRQTTHIVFSFRDITS 247 RY+LP+SY+RM DFRRRFL+ V EIN T + + Y E K + + I F++ + T Sbjct: 182 RYELPESYRRMSDFRRRFLKPAVKEINEHTSIMIDYEEVADKIRSNRIAAITFNYSNRTE 241 Query: 248 MTT 250 T Sbjct: 242 KAT 244 >UniRef50_P18351 Uncharacterized 27.6 kDa protein n=19 Tax=root RepID=YPC1_ECOLX Length = 239 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 15/231 (6%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYL------FVDQIRKSDGTLQE-HDGICEIHVAKYAE 69 ++ QSN+LTEAAY LS KR+L+L F + + D + D ++ VA Y + Sbjct: 10 KVKQSNELTEAAYYLSLKAKRVLWLCLMQTYFTASVSEDDDEMAVLGDSTFKVKVADYQQ 69 Query: 70 IFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSV 129 IF ++ +A KD+++ + + V+FY P+E + D + PW + +RG++ + Sbjct: 70 IFQVSRNQAIKDVKEGVFELSRSAVIFY-PKEGSFD---CVARPWLTEAGSRSARGIWEI 125 Query: 130 HINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWII 189 N L+ + GL N+FT + L + + NP +RLYESL Q++ SG+ W+ Sbjct: 126 EFNHKLLRYIYGLTNQFTTYSLRDCGSLRNPRTIRLYESLAQFK---SSGLWVTTHAWLN 182 Query: 190 ERYQLPQSYQR-MPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 +R+ LP+S Q+ + + +R FL + +IN +TP+ Y G+ I+ Sbjct: 183 DRFLLPESQQKNLAELKRSFLDPALKQINEKTPLLAKYSIDDSGKFLFSII 233 >UniRef50_Q46146 RepA n=3 Tax=root RepID=Q46146_9GAMM Length = 289 Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 5/229 (2%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N P++ +SN L EA+Y L+ ++R++ + Q+R+ E + + VA YA + G Sbjct: 2 NEPQVYKSNALVEASYRLTPAEQRIMLGCITQVRRDQPLTDEV--MYSVSVADYAALVGT 59 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 S K++ A +EV G W A+ S G + Sbjct: 60 DSHSTYKELADAALRLKRREVWLREYPNGQGKRPKTLVTSWVQSIAYVESEGRVELRFTK 119 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++P+ L +FT++ L + ++T+ +AMRLYE LCQ+R G+G + + W+ E +Q Sbjct: 120 DMLPYLTQLTEQFTRYALEDVAKMTSGHAMRLYELLCQWR---GAGEREVPVAWLREAFQ 176 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 L Y + D +R ++ +IN +P+ + + ++K G + +H+VF+F Sbjct: 177 LDGKYPAIKDLKRWVIEPATAQINEHSPLWVKWDQRKTGDRVSHLVFTF 225 >UniRef50_C6RSQ0 Replicase n=4 Tax=Acinetobacter RepID=C6RSQ0_ACIRA Length = 327 Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 122/234 (52%), Gaps = 4/234 (1%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I + N+L EA+Y+L+ ++R++ + + R+ + L D + IH ++Y + F L Sbjct: 17 IYKDNNLIEASYALTLSEQRLILVAIIAAREIEKELT-SDTLLTIHASEYMKHFNLGRQA 75 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A + ++ A + + + + + G Y+S W K + + P ++ Sbjct: 76 AYEALQGACDNLFERRLTYKAIDPVTGKPAVYKS-RWVSKVGYVKEAACAQLIFAPDILQ 134 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 F+ L+ +FT++ L + ++++ YA+RLYE L ++R G +S+ ++ + L Sbjct: 135 LFVKLEEKFTRYELKQISQLSSVYAIRLYELLIRWR-SKGKLYISM-VELRDKLGLLENE 192 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 Y+ M DF++R L V +++IN T + +SY +KK+GR THI FSF S+ Sbjct: 193 YKTMGDFKKRVLTVAIDQINKLTDIDVSYEQKKEGRTITHIEFSFNQKASLIVS 246 >UniRef50_C5SD11 Initiator RepB protein n=2 Tax=Allochromatium vinosum DSM 180 RepID=C5SD11_CHRVI Length = 285 Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 114/226 (50%), Gaps = 8/226 (3%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE-IHVAKYAEIFGLTSA 76 + ++N L EA Y L+ ++R+L L + ++ D ++ I I A+ +F + + Sbjct: 8 VTKANSLVEATYHLTLAEQRLLLLVISRL---DSRVELDSRIPHTITAAEVMTVFQVGES 64 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 A + + +A + + V + P+ + W + P G + ++ Sbjct: 65 RAYQILEEAAERLYTRSVTIHEPDPRQPKSDRLVTR-WVAAVNYKPGTGAIELFFAQPIM 123 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 PF L+ RF Q+ L+ +++ YA+RLYE L Q+R +G +++DW+ ER+ L Q Sbjct: 124 PFISQLKARFCQYHLANIVPMSSVYAVRLYELLIQWR---DAGTRRVELDWLRERFLLGQ 180 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 Y + DF+R LQ+ +++IN+ + + + + + K+GR + F+F Sbjct: 181 KYASIRDFKRYVLQIAIDQINTHSDLWVKWEQHKRGRVVHALTFTF 226 >UniRef50_C5S4L5 Replication protein n=3 Tax=Pasteurellaceae RepID=C5S4L5_9PAST Length = 321 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 118/226 (52%), Gaps = 16/226 (7%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +V+SND EA+Y ++ D+ R+L L + QI + Q H E VA++AE F Sbjct: 7 VVKSNDFVEASYKITLDEMRVLLLTIGQI---NSKAQNHRRDFEFTVAEFAERFNTDEKS 63 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A +++A+ G+ V E++ E+ + ++A+ G + + ++ L+P Sbjct: 64 AYAQVQRAVDMLGGRWAVI---EKNKNIER---KVTFLTEQAYFKGEGRFQIILHEKLMP 117 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR---KPDGSGIVSLKIDWIIERYQL 194 F +Q +FT++ L ++ +A+R+YE + QYR + + + +VS +W+ Q+ Sbjct: 118 FLSDIQGKFTEYNLKYIARFSSFHAIRIYEIITQYRNSKEKERTVLVSELKEWL----QV 173 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 Y R +F+ R L+ ++EIN ++ + +S+ + K+GR I F Sbjct: 174 ADKYPRWDNFKARVLEPAISEINEKSDLLVSFKQIKQGRSIHAIKF 219 >UniRef50_B5EWH3 Plasmid replication protein n=2 Tax=Enterobacteriaceae RepID=B5EWH3_SALA4 Length = 354 Score = 93.2 bits (230), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I Q N L E +Y ++ + R+L+L + +I + Q + +Y+ ++ L A Sbjct: 24 ITQGNQLIEGSYDINLAEIRLLWLALSKIDSKNP--QPEGAEIVLTAPEYSAMYDLELAN 81 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL-YSVHINPYLI 136 ++ ++ + K + Y E + WF + ++G ++ +P + Sbjct: 82 SAHQLQSVSLTLGSKPIYTYEWNERKKRVDAVARY-WFSAITYGANKGADITLSFSPKIA 140 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG-----SGIVS---LKIDWI 188 PF L+N FTQ + ++ P+A RLY L +YRK D +G++S + IDW+ Sbjct: 141 PFLYDLKNEFTQMNVFAMAKLDTPFAFRLYSWLSRYRKLDKYKNPKTGVISTEKISIDWM 200 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 +R L Y +FR R L V+ IN T + + Y GR+ TH++F++ Sbjct: 201 KDRSGLTGKYADFKNFRVRVLNPAVDAINRTTDLTVRYETVTTGRKVTHLIFNY 254 >UniRef50_C0VLN3 Replication protein n=6 Tax=Acinetobacter RepID=C0VLN3_9GAMM Length = 309 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 123/237 (51%), Gaps = 13/237 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N +V+SN + EA+Y LS ++R++ + +I K+ D + + V + ++ G+ Sbjct: 18 NKNHVVKSNQVIEASYQLSAVEQRIVLAAISRIPKNQPITD--DELYPVSVDELKQL-GV 74 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A +D+++ + ++ R + D+K + W + S+ + + + Sbjct: 75 HEKTAYRDLKEGINR------LYERSINLSIDDKSIK-MRWVQEIQFLDSQSVIGIRFSK 127 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++PF L FT++ LS+ I + Y +R+YE L QYR+ G + ++ + + Sbjct: 128 PILPFISNLSREFTKYALSDIAGINSGYGIRIYELLVQYRQI---GKREISVESLRTMLE 184 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 L + Y DF++R + +++IN +P++++Y +KK GR+ THI+FSF++ + T Sbjct: 185 LGKKYPLFADFKKRVIDTAIDQINEYSPLKVTYEQKKTGRKVTHIIFSFKEKSKSIT 241 >UniRef50_A3MAB7 DNA replication protein n=29 Tax=cellular organisms RepID=A3MAB7_ACIBT Length = 316 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 117/226 (51%), Gaps = 4/226 (1%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +V+ N L A+Y+L ++R++ L + + R+S + +D + E+H Y FG+ Sbjct: 5 VVKDNALINASYNLDLVEQRLILLAIVEARESGKGINANDPL-EVHADSYINQFGVHRNT 63 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A + ++ A K ++ Y+ ++ G+ + S W + A++ + + P ++P Sbjct: 64 AYQALKDACKDLFARQFS-YQEKKANGNIRNVMS-RWVSQIAYNDNEATVDLIFAPAVVP 121 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 F L+ +FT++ L + +++ YA+RLYE L Q+R + + L+ ++ + L Sbjct: 122 FITRLEEQFTKYELQQVSSLSSAYAIRLYELLIQWRSTGKTPTIELQ-EFRKKLGVLDNE 180 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 Y RM + R L++ + +IN T + + Y + K+GR + F+F+ Sbjct: 181 YLRMAHLKERVLELSIKQINEHTDITVKYEQHKRGRSISGFSFTFK 226 >UniRef50_A7M7E8 RepA n=5 Tax=Enterobacteriaceae RepID=A7M7E8_9ENTR Length = 329 Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 12/234 (5%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +VQ NDL E AY ++ D+ R+L L + QI D + D + ++ Y I+G+ Sbjct: 8 VVQGNDLLEGAYGVTLDEMRLLNLALAQI---DSRKPQPDMLYTLYPRDYQRIYGVNPTS 64 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWF--IKRAHSPSRGLYSVHINPYL 135 + + +R A S K V Y+ ED + WF ++ + + + Sbjct: 65 SHRQLRDAADSLMKKPVTIYK--EDRNGKVRTVQLSWFSRLEYVSNDDHSAVVLRFGQDV 122 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR-----KPDGSGIVSLKIDWIIE 190 P+ L+ FT+ + P+++RLY L + R + G+ V+L+I+W+ E Sbjct: 123 APYLFELKESFTKLDFINLARLDTPFSIRLYSWLVKARNLTRYRSHGTIEVTLEIEWMRE 182 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 + L YQ DFR++ LQ ++ IN+ T + + + K GR I F++ D Sbjct: 183 KANLQGKYQDYRDFRQKLLQPSLDRINASTDISVIWEPVKIGRSVHAIKFTYVD 236 >UniRef50_C6RK77 DNA replication protein n=2 Tax=Acinetobacter radioresistens RepID=C6RK77_ACIRA Length = 313 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 112/225 (49%), Gaps = 4/225 (1%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +V+ N L A+Y+L ++R++ L + + R+S + +D + +H Y F + Sbjct: 5 VVKDNALINASYNLDLVEQRLILLAIVEARESGKGINANDPLV-VHAESYINQFNVHRNT 63 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A + ++ A ++ Y+ D G+ + Y S W + + + + + P ++P Sbjct: 64 AYQALKDACHDLFVRQFS-YQKVNDRGNVEHYRS-RWVSEIGYVDNEAIVKLIFAPAIVP 121 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 L+ +FT++ L + ++T+ YA+RLYE L +R + ++ L D+ L Sbjct: 122 LITRLEEQFTKYELQQVSQLTSAYAVRLYELLIAWRSTGKTPVIELA-DFRKRIGILETE 180 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 Y+RM F+ L++ +N+IN T + ++Y + KKGR F+F Sbjct: 181 YKRMERFKTSVLELAINQINEHTDINVAYEQHKKGRSIVGFSFNF 225 >UniRef50_D0V0D3 RepA n=1 Tax=Moraxella bovis RepID=D0V0D3_MORBO Length = 386 Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 114/230 (49%), Gaps = 11/230 (4%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 IV++NDL A Y L+ +++R++ + +I S L + G EI ++++ F + Sbjct: 6 IVKANDLVVAGYELTANEQRLILTAIAKI--SPTQLDPNTG-YEITAKEFSKRFNIHPKT 62 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDA----GDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A +++R+A + +V E+ D ++ P+F + +P Sbjct: 63 AYRELREAASRLYERSIVIKTKEQTLKARWADMIILDN-PYFEDVMKDEDWKRVVIWFSP 121 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 +IPF I L FT+++LSE E ++ Y+ R+YE + Q++ +G + + I + ER Q Sbjct: 122 QVIPFLINLTENFTKYKLSEIAEFSSSYSFRIYEFMMQFQ---STGYIKISIKDLRERLQ 178 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 L Y D + ++ V EIN ++P ++ Y K G++ TH+ F+ Sbjct: 179 LGDKYPASKDLKLWVIETAVKEINEKSPYKVDYNLIKTGKKFTHLELRFK 228 >UniRef50_A7FCM5 Plasmid replication protein n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCM5_YERP3 Length = 342 Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 122/237 (51%), Gaps = 16/237 (6%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC-EIHVA--KYAEIFGLT 74 +VQSN L +AAYSL+ D+ R++Y+ + +I D ++ +G+ EI+V ++ E F + Sbjct: 20 VVQSNSLIDAAYSLTIDEMRLVYIAMLKI---DSKVKLENGLMPEINVTTLEFREAFNIK 76 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI--N 132 S + Q + K ++ + +E+ + + WF ++ + ++++ + Sbjct: 77 SHTMYNRLNQLGDALLVKPIITFEYDEEKQETVKRKRV-WFTSVSYVDDQESKAINLRFS 135 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRK----PDGSGIVS---LKI 185 P L+PF L++ FT+ + E+ +P+AMRLY+ L +YR+ G G+V + Sbjct: 136 PELLPFLYALKDNFTKVDFTYLAELDSPFAMRLYQWLQKYRRMKKYNKGDGLVETEPFSL 195 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 + I R L Y F+R L +++IN T + ++Y KKG+ I+F++ Sbjct: 196 EEIKNRTGLSSKYPEYKIFKRDVLDPAIHKINRVTDISVTYKPVKKGKTIIAIIFAY 252 >UniRef50_Q2LA81 Replication initiator-like protein n=1 Tax=Laribacter hongkongensis RepID=Q2LA81_9NEIS Length = 255 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 109/230 (47%), Gaps = 11/230 (4%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIR--KSDGTLQEHDGICEIHVAKYAEIFGLT 74 +I S+ LT AA L+ +KR++ V ++ K+DG G ++ YAE FG+ Sbjct: 23 QITMSHALTTAAQGLTLAEKRVMMYAVAKLDSFKADGGTP--SGAVKLVAHDYAEQFGVD 80 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A +RQA K + + F+ P + +E W +SP G ++ P Sbjct: 81 PDTAYTQLRQAGKGIFNRYIRFFEPGKKGPEEVMVR---WVSSARYSPGTGTVTLRFTPE 137 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 + P + L+N+FT+++L++ + + Y+ RL E L QY+ +G +++D + Sbjct: 138 IAPHLLQLKNQFTKYKLAQASALRSIYSWRLLELLSQYQ---STGWRQIELDEFHHAMET 194 Query: 195 PQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 P Y+ D RR ++ V E+ + + + K GR+ T + F F+ Sbjct: 195 PAGYKANFKDCRRWVIEPAVKELREKDGWLIDWTPIKSGRKVTALHFEFK 244 >UniRef50_B0VVG2 Replication protein n=4 Tax=Acinetobacter RepID=B0VVG2_ACIBS Length = 303 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 110/227 (48%), Gaps = 13/227 (5%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +V+SN + EA+Y LS ++R++ + +I +++ D I + + ++ G+ Sbjct: 14 VVKSNQVIEASYQLSSTEQRIVLAAISKISRAEDITD--DEIYRVTIDDLKKL-GVHEKT 70 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A +D++ + + + +E W S+ + + + ++P Sbjct: 71 AYRDLKDGVNRLYDRSINLAINDESI-------KMRWIQSIRFLESKSVVGIRFSKEILP 123 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 F L FT++ LS+ +++ YA+R+YE L QYR G + I+ + +L + Sbjct: 124 FISNLSREFTKYSLSDIAGMSSAYAIRIYELLSQYR---SIGKREIPIESLRSMLELGKR 180 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 Y D +R + V++IN +P+ +SY + K GR+ THI F+F++ Sbjct: 181 YPLSADLKRWVIDTAVDQINEHSPLNVSYQQIKTGRKVTHIQFTFKE 227 >UniRef50_B0VVF3 DNA replication protein n=7 Tax=Acinetobacter RepID=B0VVF3_ACIBS Length = 326 Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 124/245 (50%), Gaps = 26/245 (10%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQE--HDGICEIHVAKYAEIFGLTS 75 ++++N L +A+Y+LS ++R++ L + K++ QE D + IH +YA+ F + Sbjct: 6 VIKNNALIDASYTLSLVEQRLIGL---ALVKANNQHQEITSDTVLTIHAGEYAQQFNVDG 62 Query: 76 AEASKDIRQA-----LKSFA--------GKEVVFYRPEE-DAGDEKGYESFPWFIKRAHS 121 + A + +++A L+ F+ GKE RP++ GD W K ++ Sbjct: 63 SVAYRALKEASERLFLRYFSYTLYGLDFGKEYTLKRPKKLKDGDIPTIMKSRWVQKVGYT 122 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 S GL + ++ + FT + LS+T E T+ YA RL+E L +++ + I Sbjct: 123 ESEGLLHFQLTSDVVRLVANSKEYFTSYYLSQTTEFTSTYATRLFELLMKWK--NVGHIP 180 Query: 182 SLKIDWIIERYQL---PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 ++I+ + R QL P+ Y+ + +F+ R L V V ++N + ++ Y + K+GR T Sbjct: 181 FIEIEQL--RGQLGVEPKQYKIISNFKLRVLDVAVEQVNQYSDYKIEYEQHKQGRTITGF 238 Query: 239 VFSFR 243 F F+ Sbjct: 239 SFKFQ 243 >UniRef50_D2TVA4 Plasmid replication protein n=2 Tax=Enterobacteriaceae RepID=D2TVA4_CITRO Length = 335 Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 13/234 (5%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + Q N L E AY ++ + R+LYL + +I D + + +Y + F L S Sbjct: 18 LAQGNQLLEGAYDITLIEMRLLYLALTKI---DSRKPQPANEYTLFAKEYRDTFSLDSKN 74 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWF--IKRAHSPSRGLYSVHINPYL 135 + ++ A S K +V Y E + F WF I+ S ++ + + Sbjct: 75 CYEQLKSAASSLGSKPIVTYEWNEAKKRIDAVKRF-WFSSIRYGVGNSESDITLRFSDSV 133 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY----RKPDGSGIVS---LKIDWI 188 + L++ FTQ L ++ P++ RLY L +Y R SG++S + I+W+ Sbjct: 134 SQYLYELKSEFTQMNLEHMVKLDTPFSFRLYSWLYKYKNLNRNKKHSGVISTDPITIEWM 193 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 ER L Y DF++R L V+ IN+ T + ++Y K GR+ +VF++ Sbjct: 194 KERTGLTGKYPVYKDFKKRVLDPAVDIINANTNLSVTYEGIKSGRKIESVVFTY 247 >UniRef50_C8PV39 DNA replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV39_9GAMM Length = 341 Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 12/238 (5%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFV------DQIRKSDGTLQEHDGICEIHVA 65 +K +V+SN L EA+YSL+ + R+L + + D+ K T+ E I Sbjct: 2 KKPQDMVVKSNTLIEASYSLTVQEIRLLDIALADLATYDECEKDLLTMHE---FVHIRAD 58 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 +YA+I+ + A +R+A ++ + + E + + W A+ +G Sbjct: 59 EYAKIYDVDMKTAYTALREASENLFTRYFTYSVQSEKFPTHQEHRKARWVWNIAYVEGQG 118 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 L + P LI L+ F+++ L + +T+ YA RLYE + Q+RK + S+ Sbjct: 119 LVKLAFTPDLIKLAGKLKGDFSRYHLKQKAPLTSVYAHRLYEMMMQWRK--SKTVPSVSY 176 Query: 186 DWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 + + R+ + + Y+R+ +F+ R L + +IN T + +SY + K+GR+ +F F Sbjct: 177 NELRHRFDIDDKEYKRIANFKARALDPAIKQINEHTDIIVSYEQYKEGRKVAGFIFKF 234 >UniRef50_C8PXW7 DNA replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PXW7_9GAMM Length = 321 Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 124/243 (51%), Gaps = 12/243 (4%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 +P++V+SN+L +A+YS+ + R++ L + R+S+ L++ + + I YA+IF ++ Sbjct: 6 NPKVVKSNELIKASYSMDLVEHRLIGLAIYTARESNKGLRKFEHLV-IKPNTYAKIFNVS 64 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A K ++ A + ++V F E GD + ++ W + A+ ++ + P Sbjct: 65 LDAAYKALKDAAEKLFERQVTFRDTYE--GDPRKRKT-RWVSEIAYIENKAELQLIFAPA 121 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 ++ L+ +FT++ L T + Y+ RL+E + Q+ I + + + E++ L Sbjct: 122 IVDEITKLEEQFTEYYLKMTANFDSQYSYRLFELVKQWNLNKVKEIPNFDLSTLREQFGL 181 Query: 195 PQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF-------SFRDIT 246 + Y+R+ +F+++ L V EIN T + +SY + K GR T F + +D+T Sbjct: 182 EKHEYERLDNFKKKVLDKAVKEINDHTDINISYSQIKSGRVITGFKFNVKRSGNNLKDVT 241 Query: 247 SMT 249 T Sbjct: 242 PTT 244 >UniRef50_C5SDE1 Initiator RepB protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SDE1_CHRVI Length = 281 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 6/224 (2%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQ-EHDGICEIHVAKYAEIFGLTSA 76 + +SN L EA YSLS + R+L + QI G D +H + A++F + S Sbjct: 9 VTKSNSLVEACYSLSLAELRILLATIAQIDSRPGAAPISSDTPFPLHASDLAKLFRVPSK 68 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 +A + +R ++V+ Y W + G ++ P ++ Sbjct: 69 QAYELLRDGASRLYERDVII--DAATTAHPNKYTKSRWVSAITYVEDEGYVDLYFAPKVL 126 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 PF L + FT++++ +++ YA+RLYE L Q+ K G L ID I + Sbjct: 127 PFLTNLASEFTRYQIKHVAPMSSVYAIRLYELLKQWVK---IGERQLSIDEIKTMLMIDN 183 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 +Y + + +R + V +IN + ++++ ++K+GR T ++F Sbjct: 184 AYSSVTELKRWVVTPAVQQINKHSDLKVTMEQRKRGRTITALIF 227 >UniRef50_B3AF43 Plasmid replication protein n=4 Tax=Enterobacteriaceae RepID=B3AF43_ECO57 Length = 334 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 13/234 (5%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + Q N L E AY ++ + R+LYL + +I D + + +Y + F L S Sbjct: 18 LTQGNQLLEGAYDITLIEMRLLYLALTKI---DSRKPQPASEYTLFAKEYRDAFSLDSKN 74 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWF--IKRAHSPSRGLYSVHINPYL 135 + ++ A S K +V Y E + F WF I+ S ++ + + Sbjct: 75 CYEQLKSAASSLGSKPIVTYEWNETKKRIDAVKRF-WFSSIRYGVGNSESDITLRFSDSV 133 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY----RKPDGSGIVS---LKIDWI 188 + L++ FTQ L ++ P++ RLY L +Y R SG++S + I+W+ Sbjct: 134 SQYLYELKSEFTQMNLEHMVKLDTPFSFRLYSWLYKYKNLSRNKKESGVISTDPITIEWM 193 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 ER L Y DF++R L V+ IN+ T + ++Y K G++ +VF++ Sbjct: 194 KERTGLTGKYPVYKDFKKRVLDPAVDIINANTNLSVTYEGIKSGKRIESVVFTY 247 >UniRef50_D0SHJ5 DNA replication protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SHJ5_ACIJO Length = 311 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 114/229 (49%), Gaps = 10/229 (4%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 K S +V+ N L +A+++LS ++R++ + + + R+ D ++ V Y + F Sbjct: 3 KESRLVVKDNSLIDASFNLSLVEQRIMLMAIVEARELPKL--TFDTPIKVSVKSYIDQFK 60 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + S+ A + ++ A+ + ++ +Y P DE+ E W K ++ +G + Sbjct: 61 VASSTAYESLQDAVDTLFERQFSYYDP---VMDERFKER--WIYKASYIDDKGHVVMFFT 115 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P +I L FTQ+ + E + + Y++RLYE L +Y++ S ID + Sbjct: 116 PTVISMISRLYKNFTQYLIDEVSDFKSKYSVRLYELLIKYKELGSSK--KYTIDELRSLL 173 Query: 193 QLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 + + Y+ M F+ L V EIN++T +++ Y + K+GR +HI+F Sbjct: 174 GVENTEYKTMSLFKVNVLDKAVKEINTKTDIQIKYDQFKEGRTISHILF 222 >UniRef50_C8PWL8 DNA replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWL8_9GAMM Length = 310 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/235 (23%), Positives = 107/235 (45%), Gaps = 9/235 (3%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 IV+ N L A+YSL ++R++ L + + R++ H+ + Y F + Sbjct: 6 IVKDNALINASYSLELTEQRIILLAILKARENKT---PHNQELIVTAQSYITAFNVHRNT 62 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A K ++ A + ++ + R + E W ++ + + ++P Sbjct: 63 AYKTLKTACDNLFTRQFTYQRYNSNGNVE--VVKTRWVQSVIYAENESYIKIKFTDEILP 120 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 L+ FT + L + + + +++RLYE L QYR G + + +D + + + +S Sbjct: 121 LVTMLEKHFTSYELQQVSSLKSVHSIRLYELLIQYRTV---GKIEISLDDLRLKLGINES 177 Query: 198 -YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 Y RM +F+ R L V + +IN + + + Y + K GRQ T +F+F+ S T Sbjct: 178 EYPRMDNFKNRVLDVGIQQINEHSDITVKYNQVKTGRQITGFIFTFKQKPSKATA 232 >UniRef50_D0T0I0 DNA replication protein n=4 Tax=Acinetobacter RepID=D0T0I0_ACILW Length = 327 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 30/245 (12%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQE--HDGICEIHVAKYAEIFGLTS 75 +V++N L +A+Y+LS ++R++ L + K++ QE D + IH +YAE F + S Sbjct: 6 VVKNNALIDASYTLSLIEQRLIGL---ALVKANNQHQEITSDTVLTIHAGEYAEQFKVDS 62 Query: 76 AEASKDIRQA-----LKSFA--------GKEVVFYRPEE--DAGDEKGYESFPWFIKRAH 120 + A + +++A L+ F+ GKE P++ D +S W K + Sbjct: 63 SVAYRALKEASERLFLRYFSYTLYGLEFGKEYTLKPPKKLRDCDIPTTMKS-RWVQKIGY 121 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + S GL + ++ + FT + LS+T E T+ YA RL+E L +++ + I Sbjct: 122 TESEGLLHFQLTSDVVLLVANSKEYFTSYYLSQTTEFTSTYATRLFELLMKWK--NVGHI 179 Query: 181 VSLKIDWIIERYQL---PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 + I+ + R QL P+ Y+ + +F+ R L V V ++N + + Y + K+GR T Sbjct: 180 PLIPIEQL--RGQLGVEPKQYKIISNFKLRVLDVAVEQVNQHSDYTIKYKQHKQGR--TI 235 Query: 238 IVFSF 242 I FSF Sbjct: 236 IGFSF 240 >UniRef50_Q3IEM2 Putative RepA n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IEM2_PSEHT Length = 320 Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 114/239 (47%), Gaps = 20/239 (8%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 KNSP+IV +N L A YSL +++R++ L + +I + + + G I+ +YA+ FG Sbjct: 4 KNSPKIVFANKLLHAGYSLEINEQRLINLALSKI----NSKKSNPGQIVIYPTEYAKCFG 59 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYE-SFPWFIKRAHSPSRG---LYS 128 L + + + A++S K V D+KG S PW + + + Sbjct: 60 LRKSSVYEQLSSAVESLKDKFVSIL-------DDKGEAVSIPWVSNATYEKLKNQGSFIT 112 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR-----KPDGSGIVSL 183 + + + P+ ++ FT+ T ++ + + RLY L + R K G +V+ Sbjct: 113 LEFSKEIEPYIFNIEKNFTRLFFHNTVKLNSLASFRLYALLNRVRNYHNYKRKGEVVVNF 172 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 ++ + ++ L +SY DF+ R L + +IN+ T + +++ KK G T I F++ Sbjct: 173 QLPEMKQKLFLSESYGAWRDFKNRVLLPAIEKINAHTDICVTFKPKKMGNCITAIEFAY 231 >UniRef50_Q1Q7S1 Initiator RepB protein n=3 Tax=Bacteria RepID=Q1Q7S1_PSYCK Length = 315 Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 5/221 (2%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N I + N L A+YSL ++R+++L + + R+ L + G+ I Y E F + Sbjct: 3 NKQLIAKDNKLIGASYSLGIPEQRLIFLAIIEAREQ-KQLIDAKGVLNIRAKSYQEQFKV 61 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + ++ A + E G ++ W K ++ G+ + Sbjct: 62 EKHTSYDALKSATSGLFDAHFEYEDIHEKTG-KQARHVIRWVQKISYIDDAGMVELQFTD 120 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 +IP L ++T++ L + E+ + Y++RLYE + Q++ + +S +D + + Sbjct: 121 AVIPLITRLSEQYTEYELKQVSELQSEYSIRLYELMMQWKAVGKTNKIS--VDDLRRKLG 178 Query: 194 L-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 + P+ Y++M +F+ R L +N+IN T ++ Y + K GR Sbjct: 179 VEPKQYKKMNNFKARVLDHAINQINEHTDIQAEYDQYKDGR 219 >UniRef50_D0WD49 Initiator RepB protein n=3 Tax=Neisseria RepID=D0WD49_NEILA Length = 369 Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 7/226 (3%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +V+ N L A+Y+L ++R++ L + + R + + +D + I + Y F Sbjct: 7 VVKDNALINASYNLELVEQRLILLSIIEARTTGKGITANDRLT-ITASSYMNNFHTNRNT 65 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A K ++ A + ++ F E+ EK + W + A+ + + P + P Sbjct: 66 AYKALKDACNNLFERQFSFI--EKTPKGEKVVRT-RWVSQVAYIEQQATVELVFAPNVAP 122 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ-LPQ 196 L+ FT + L + +++ YA+RLYE + +R + + S + ER +P Sbjct: 123 LITMLEKNFTSYELDQVSSLSSKYAVRLYEIIISWRAAGKTPMFSTME--LRERLGVMPD 180 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 YQ+M F+R+ L V +IN +T + ++Y + K+GR+ FS Sbjct: 181 EYQKMELFKRKVLDFAVKQINDKTDISITYEQHKEGRKIVGFTFSI 226 >UniRef50_Q2B8G7 Replication initiator protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8G7_9BACI Length = 422 Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 16/225 (7%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I +SN + E+ Y L+ ++R+L + +++ SD + + + V + G++S Sbjct: 18 ITKSNTIIESQYKLTLQEQRILLITASKVQPSDEDFKPY----KFRVTDLVDKIGISSQT 73 Query: 78 ASKD-IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 + I+ +K GK V F + D K + W + ++ G + NP L Sbjct: 74 SMYSYIKSVVKGLQGKTVEFKK------DNKTIVA-NWLVTSIYAEQEGTVILKFNPDLK 126 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 FF+ L+ RFT ++L ++ + Y++R+YE L QY + ID + E+ + + Sbjct: 127 EFFLQLKERFTSYQLENVIQLNSVYSIRIYELLKQYESLRKR---TFTIDELREKLGIEK 183 Query: 197 S-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 S Y++ + R + E+ +T + ++ E KKGR+ T I+F Sbjct: 184 SKYKQYGHLKDRVINAAKQELAEKTDISFTFQEVKKGRKVTGIIF 228 >UniRef50_B0VVD6 Putative replication protein n=1 Tax=Acinetobacter baumannii SDF RepID=B0VVD6_ACIBS Length = 339 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/244 (23%), Positives = 118/244 (48%), Gaps = 27/244 (11%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +V++N++ EA+Y LS +++R++ + I K + + ++ G C + + E+ G+ Sbjct: 18 VVKANNIIEASYQLSLNEQRLILAAIACIPKGE-EVTDNTGYC-VTRESFIEL-GVNPKT 74 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAG--------DEKGYES-----FPWFIKRA----- 119 AS++IR+A + + +AG D Y S P FI+ Sbjct: 75 ASREIREACDRLFNRVITI---TTEAGTFKTRWVQDIMKYNSDWALANPEFIQEVAGSDP 131 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 ++ L ++ + ++PF L + FTQ+ L + +++ Y++R YE + Q++ +G Sbjct: 132 YAEDYILAAIRFSKSVLPFISNLSSNFTQYFLQDIAGVSSGYSVRFYELMMQFK---STG 188 Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 +++D + L Y D +R + ++E+N ++P+ + Y K GR+ THI Sbjct: 189 YRKIRLDDLRNMLDLNNKYPLTADLKRWVIDTAIDELNEKSPITIKYKLLKTGRKFTHIE 248 Query: 240 FSFR 243 F+ Sbjct: 249 LKFK 252 >UniRef50_P95424 Replication initiator protein n=3 Tax=Pseudomonas RepID=P95424_PSEAC Length = 237 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 104/229 (45%), Gaps = 17/229 (7%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQI--RKSDGTLQEHDGICEIHVAKYAEIFGLT 74 ++ QSN L EA+++L+ ++KR++ I RK DG I +A++FGL Sbjct: 8 KVTQSNRLVEASHTLTLNEKRLVLCAASLIDPRKP----LPKDGYLTIRADAFADVFGL- 62 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPE-EDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 D+R A ++ +R + K E W + +G + +P Sbjct: 63 ------DVRHAYEALDDAASRLFRADIRRYSKGKIVERMRWVFHVKYREGQGCVELGFSP 116 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++P L FT ++L + +++ YA+RLYE + Q+ K G +D + + Sbjct: 117 TVLPHLTMLNREFTSYQLKQIGSLSSFYAVRLYELMSQFLK---LGQRECTLDQLRQMLD 173 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 L YQ + + R R L + E+N+ T + ++ +++GR+ F+ Sbjct: 174 LGDKYQDVKNLRVRVLDPALKELNAGTDLAVTAEPRRQGRKIVGFSFTI 222 >UniRef50_Q0QVX3 PNL18.2_p1 n=2 Tax=Neisseria lactamica RepID=Q0QVX3_NEILA Length = 257 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/240 (21%), Positives = 114/240 (47%), Gaps = 12/240 (5%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 V+ K S +V SN +T +A +L+ +KR+L + ++ +G ++ + Sbjct: 18 VVKQSKDLGSRNVVISNYITRSAQTLNLVEKRILMAGIAKLGGVNGEIK-------LTAQ 70 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 +YA+ +G+ A +++ A+ + + + + + G + G + W + G Sbjct: 71 EYADTYGVDIRTAYNELKGAVHTLMKRTLSWQITD---GKKIGTRTTIWVQGYDYFKDEG 127 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR-KPDGSGIVSLK 184 L + Y+ PF L+ FT+++L + + + Y+ RL E Q + K DGSG +S+ Sbjct: 128 LVKFRFSEYVFPFLFELEREFTKYQLQQAAALRSIYSWRLLELFEQMKDKTDGSGWLSMS 187 Query: 185 IDWIIERYQLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 I+ + +SY+ R+R ++ + E+ + + + +K+GR+ ++F F+ Sbjct: 188 IEEFWHAMEATESYRANFQLLRKRVIEPAIKELTEKDNWLIEWEARKRGRKVATLLFKFQ 247 >UniRef50_D0SRM6 Replicase n=2 Tax=Acinetobacter RepID=D0SRM6_ACIJU Length = 334 Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/231 (22%), Positives = 105/231 (45%), Gaps = 14/231 (6%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +V+ N L A+Y+L ++R++ L + + R++ + +D + IH + Y + F + Sbjct: 3 VVKDNALINASYNLELVEQRLILLAIIEARETGKGINANDALT-IHASSYIQNFNVQKHT 61 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A ++ A + ++ F E ++ W + + G + P ++P Sbjct: 62 AYGALKDACRDLFSRQ--FSYQELSPKGNVINQTSRWVSQIGYIQEEGSVQLIFAPAVVP 119 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL-----KIDWIIERY 192 L+ +FT + L + + + YA RLYE L +R + ++ L K+ + Y Sbjct: 120 LITQLEQQFTSYDLEQVSTLKSKYATRLYEILISWRSVGKTPMIGLEELRGKLGLGVNDY 179 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 +L + +F+ R L++ + +IN T + + Y + KKGR F F+ Sbjct: 180 KL------LANFKLRVLELALEQINEHTDIFVKYEQHKKGRSIIGFSFKFK 224 >UniRef50_P17492 Replication protein n=8 Tax=Proteobacteria RepID=REPA_NEIGO Length = 328 Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 22/231 (9%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTL--QEHDGICEIHVAKYAEIF 71 N +V++N L EA Y LS D+ R+L L + GT+ + + I + VA + F Sbjct: 3 NDLVVVKANSLIEANYRLSIDEIRILALTI-------GTMDPKSNQKIFDFTVADFVREF 55 Query: 72 -GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 ++ A K I+ A+K + V D+ F W R + G + + Sbjct: 56 PEISQDNAYKQIQAAIKRIYDRSV-------KTEDKDRVTEFRWVSSRTYFKKEGRFRIA 108 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI-DWII 189 + ++P+ L+ +FTQ++L + +++R+YE + QYR I K+ +W+ Sbjct: 109 MTDEVMPYLTQLKGQFTQYQLKHIAYFNSVHSIRIYELITQYRSVGSREITVEKLKEWL- 167 Query: 190 ERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 Q+ Y R +R L+ + EIN ++ + + + K+GR + F Sbjct: 168 ---QVENKYPRFNSLNQRVLEPAITEINEKSDLVVEVEQIKRGRTIHSLNF 215 >UniRef50_C9S245 Initiator RepB protein n=7 Tax=Geobacillus RepID=C9S245_GEOSY Length = 383 Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/225 (22%), Positives = 106/225 (47%), Gaps = 14/225 (6%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + +SN L EA Y LS +++++ + QIRK D + + ++ + +++E+ G + Sbjct: 14 VTKSNALIEANYKLSTIEQKIILYIISQIRKDDADFK----MYKLPIQEFSELLGYRGSP 69 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 ++R+ K+ K + + + + + W + G S+ +P L P Sbjct: 70 KYTELREITKNLMRKVL-------EIREGQKLKQLSWVSYVEYDEHSGYVSLAFDPRLKP 122 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 + + L+ FT +RL E+ + Y++R+YE L +++ G V +++D + Sbjct: 123 YLLQLKREFTTYRLKNVMELKSSYSIRMYELLKRWQ---YMGEVVIRLDDLRMMVGAGDK 179 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 Y +F++R L EI+ +T + +Y E ++ R+ I F Sbjct: 180 YSEYHNFKKRVLNPAKKEISEKTDIMFTYEEIREKRKVAAIRFQI 224 >UniRef50_A0S0J1 Rep n=2 Tax=Acinetobacter RepID=A0S0J1_9GAMM Length = 307 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 18/236 (7%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N+ +V+ N L +A+++LS ++R++ L + R+S D E+ V+ Y F + Sbjct: 4 NNKLVVKDNALIDASFNLSLIEQRIMLLAIVGARESSNL--TPDTPIEVLVSDYIHQFKV 61 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFP---WFIKRAHSPSRGLYSVH 130 S A +R+A K+ +E + KG E+ W K + S GL ++ Sbjct: 62 DSNNAYGLLREAAKTLKRREFSYL------DRYKGLEALTTANWVNKVTYVDSSGLIVLY 115 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY---RKPDGSGIVSLKIDW 187 ++ +I L +FT++ + + + + Y++RLYE L ++ K + I L+ Sbjct: 116 LSKEVISLISRLSEQFTKYHIEQVSDFRSKYSIRLYELLIKWLNVAKTEKYSINDLRSKL 175 Query: 188 IIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 ++ Y M +F+ L V+EIN T + + Y + KKGR T I F + Sbjct: 176 GLD----ATEYSTMSNFKSNVLDRAVSEINKHTNITVEYDQFKKGRVITDIQFRIK 227 >UniRef50_D2QW27 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QW27_9SPHI Length = 308 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 20/216 (9%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I Q N LT A Y ++ +K +LY+ V +RK D + + ++ V + AE+ G AE Sbjct: 7 IWQDNVLTTARYEMTEAEKNLLYMVVASVRKDDPPTK----MYQVSVKEMAEVTG--QAE 60 Query: 78 AS-KDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA-HSPSRGLYSVHINPYL 135 + +QA + + + GD FI A + G+ + ++ + Sbjct: 61 LKFETYKQATRKLMSR---VFETTLTNGDVLQAS----FIASALYRKGTGIIQIELSQMV 113 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR----KPDGSGIVSLK-IDWIIE 190 PF++ L RFT+ +L + + YA R+YE LC Y+ K G+ LK + WII+ Sbjct: 114 RPFYVDLNTRFTKMQLVAAISLNSTYAKRIYELLCMYKNMKDKTFRRGLTELKTMLWIID 173 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSY 226 SY F + L+V EIN T + +Y Sbjct: 174 PKTGRDSYTNWTRFEKAVLEVAAKEINGHTDITFNY 209 >UniRef50_A0A1K9 Replication protein n=7 Tax=Enterobacteriaceae RepID=A0A1K9_ECOLX Length = 233 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 109/230 (47%), Gaps = 17/230 (7%) Query: 20 QSNDLTEAAYSLSRDQKRMLYLFVDQIRK-SDGTLQEHDGICEIHVAKYAEIF---GLTS 75 +SN L EA+Y L+ ++R L L + +++ SD E + +Y + F G + Sbjct: 8 KSNALVEASYKLTLQEQRFLLLCIGRLKSGSDAESTELQKTMTVTAEEYFDSFPDMGRKN 67 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA-HSPSRGLYSVHINPY 134 AE +++A+ + ++ D++ E F W RA ++ G + + Sbjct: 68 AEVQ--LQEAIDRLWDRSIIL-------KDDEKREEFRWIQYRAQYAKGEGKAQITFSDA 118 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 ++P+ L+ +FT+ + ++ Y++R+YE L Q+R G I++L D + Sbjct: 119 VMPYLTQLKGQFTRVVIKNISNLSRSYSIRIYELLQQFRST-GERIIAL--DDFRSMLDI 175 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 YQ ++ L+ CV+E+N ++ + ++ KKGR + F F++ Sbjct: 176 EHKYQTYKSLNQQLLRPCVDELNQKSDLAVTLETIKKGRTVVALHFRFKE 225 >UniRef50_A1U7R0 Initiator RepB protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7R0_MARAV Length = 409 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 26/243 (10%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 ++ +SN L EA Y LS + ++L + + +IRK + E V AE+ + + Sbjct: 24 KVAKSNALVEAQYELSGKEHKLLLVAMAEIRKDQTSFYEQ----VFSVQDLAELLDFSKS 79 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKG-YESFPWFIKRAHSPSRGLYSVHINPYL 135 A ++ + K+V E D+ G +E + W + +A+ + G + + + L Sbjct: 80 SAYSELDRLSTGLMRKQV------EIRNDQTGGWEKYQW-VTKAYCRN-GQFGIRFSEEL 131 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL------KIDW-- 187 PF +GL RFT + LS ++ + YA+RLYE L Q+ + G SL K DW Sbjct: 132 KPFLLGLVGRFTLYELSRVLKMNSNYAIRLYELLKQFERF-GKRTFSLDPKMTSKEDWES 190 Query: 188 --IIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMR-LSYIEKKKGRQTTHIVFSFRD 244 + Y P+SY R + +R L ++++ T R +++ + R+ +VFS++ Sbjct: 191 FPKLMGYN-PKSYARFSNLNQRVLSPAISQVEQYTEFRSVNFSVIRYNRKPVALVFSWKT 249 Query: 245 ITS 247 + + Sbjct: 250 VDT 252 >UniRef50_Q6XUP4 RepA n=4 Tax=Pseudomonas RepID=Q6XUP4_9PSED Length = 288 Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/232 (19%), Positives = 111/232 (47%), Gaps = 14/232 (6%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 R+ +SN L A+Y L+ +++R++ + ++ ++ + Y++I+G+ Sbjct: 16 RVTKSNTLITASYRLTLNEQRLILAAISKLDPRRPMPKK----VSVSAVDYSDIYGVQLR 71 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 A + ++ A +++ + D G E W + + G + +++ Sbjct: 72 HAYEQMKVAADELYERDIKTF-------DGSGMERKRWVDRAKYLDGEGRVELSFTIHVM 124 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 P+ L ++ T + L + + ++ RL+E L Q+RK +G ++++ + L Sbjct: 125 PYLTMLYSKVTSYDLRRVACLDSSHSFRLFEMLMQFRK---TGWAYIEVEALRVALGLSD 181 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 +YQR + R+R + V E+ +++ + +SY +++GR+ I F+F D+ + Sbjct: 182 AYQRFNNLRQRVIDPAVEELKTKSNLDVSYELRREGRKVIAIKFTFCDLAQL 233 >UniRef50_A7GJQ6 RepB family protein n=1 Tax=Clostridium botulinum F str. Langeland RepID=A7GJQ6_CLOBL Length = 337 Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/234 (23%), Positives = 115/234 (49%), Gaps = 16/234 (6%) Query: 8 NHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY 67 NH + + I QSN L EA+Y+L+ +++++ L I+K D +E+ + Sbjct: 3 NHIESAKNNWIYQSNKLIEASYTLTVIEQKLIRLLASMIKKDDTDFKEY----KFKTKDL 58 Query: 68 AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLY 127 +I + + +DI + + + ++ + E +E + W +G+ Sbjct: 59 IKILNTSDSRFYRDIDNITDLLMQRII---KIKDISNGE--FEKYHWV--DVAKYKKGVL 111 Query: 128 SVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW 187 + IN L PF++ L + +T+++ + + Y+ R+YE L QY K G I++ I+ Sbjct: 112 ILKINKDLKPFYLSL-DWYTKYQFKNIMQFKSTYSFRMYELLKQYEKI-GHRIIT--INE 167 Query: 188 IIERYQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 I + ++ Y + + +++ ++V +NEIN+ T + + Y E K+ R+ T I F Sbjct: 168 IRSMLDIKKNKYPKYANLKQKVIKVSINEINTNTDLFIDYEEVKESRKITSIKF 221 >UniRef50_Q6TV38 Putative replication initiator protein n=1 Tax=Bacillus methanolicus RepID=Q6TV38_BACMT Length = 420 Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 14/228 (6%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 K S + +SN L EA Y L +++++ IR +D + + + V ++ ++ G Sbjct: 18 KTSNFVTKSNKLIEANYKLGVVEQKIILCLASNIRPTDSDFKTYT----LPVKEFNKLLG 73 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 L + ++R+ K K VF + K W A++ S G + + Sbjct: 74 LKGSPKYTELRKITKELMQK--VF-----EVRINKKVIQVAWLSYVAYNESEGTIDIRFD 126 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P+L P+ + L+ FT ++L ++ + YA+R+YE L QY K + +D + + Sbjct: 127 PFLRPYLLELKKEFTSYKLENVVKLKSSYAIRIYELLKQYEKLQERTFL---LDDLRKML 183 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 Y +F++R L E+ +T + E K GR+ I F Sbjct: 184 GAEDIYPAYGNFKQRVLMPAQKELKKKTDISFEIEEIKVGRRVNKIKF 231 >UniRef50_UPI0001AF0368 DNA replication protein n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF0368 Length = 373 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 112/245 (45%), Gaps = 39/245 (15%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + ++N L A+Y+L ++R++ L + R + L + I EI + YA+ F T + Sbjct: 10 VYKANALINASYALDTAEQRIILLAILVSRNKNADLT-AETIIEIPASLYAQKFNTTVSA 68 Query: 78 ASKDIRQALKSF-----------AGK-EVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 A K +++A + GK EVV R W + ++ Sbjct: 69 AYKTLKEAEDTLFERRFSYTTMRNGKIEVVRSR---------------WVSRVSYVKDDA 113 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPD--GSGIVSL 183 L ++ + P +IP L+ FT++ + +++T+ Y +RLYE + ++ D + + Sbjct: 114 LLTITLAPDVIPLVTKLEGTFTKYAIDNLRDVTSKYGIRLYELVASWKNSDIRKTPVYDF 173 Query: 184 KIDWIIERYQLPQSYQ--------RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQT 235 + D+ + LP Y+ M +F +R L+ +++INS T + ++ + K GR Sbjct: 174 E-DFRAKMGLLPHEYRDKKNPESTDMTNFNKRVLKPAIDQINSFTDLFITEKKIKTGRNI 232 Query: 236 THIVF 240 T I F Sbjct: 233 TGIYF 237 >UniRef50_Q2RYM1 Initiator replication protein RepB n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYM1_SALRD Length = 336 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 112/237 (47%), Gaps = 15/237 (6%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + R+V+SN L ++ + ++ + R++ + + Q+ K D +E +++ A++ G Sbjct: 9 DQARVVKSNRLVQSKMNWTKLEHRVVAMLIAQLEKDDKEFEEQ----RVYIKDIADLSGR 64 Query: 74 TSA---EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 + +++I Q L + + R + D G + Y+ + + G Sbjct: 65 NGKSLYDQAEEICQKLLD----QKIHIRTQTDDG-RRRYKGYNCMSSCEYVEGSGYIEAK 119 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 N + PF + L+ RFTQ+ L ++++ ++MR+YE L + +G + L I+ + E Sbjct: 120 FNDDMQPFLLQLKRRFTQYNLKCFMQLSSQHSMRIYELL---KMREGIKYLRLGIEELRE 176 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 SY+R DF+R L+ E+ +T + +Y +++G+ I F ++ S Sbjct: 177 VLSCEHSYERFADFKRWVLERARGELWDKTDIYFNYQVEREGQTPVRINFVIKENDS 233 >UniRef50_A8V5F5 Replication initiator protein (Fragment) n=2 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V5F5_9AQUI Length = 225 Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 108/224 (48%), Gaps = 21/224 (9%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 M E IN KN+ + NDL +A + LS ++ R++ + I+ D +++ Sbjct: 18 MKEVKEIN----KNAIATIH-NDLIQARHKLSLEEIRLMDTIISFIQPEDKDFKKY---- 68 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 +I VA + ++FG + +++A++ K + + E ++ ++ F + + Sbjct: 69 KIPVAVFKDLFGTQRKDIYDVVKRAVEGLLSKPIKIEKKNERG--KRYFKMFNFIRYGEY 126 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 G + V I P P+ + L+ F++ + T + + YA+RLYE L QY + +G Sbjct: 127 EEGAGCFYVSIAPEFKPYLLQLKEFFSKIPIKYTYVLNSRYAIRLYELLKQY---ENTG- 182 Query: 181 VSLKIDWIIERYQL----PQSYQRMPDFRRRFLQVCVNEINSRT 220 ++D++ E ++ P Y R +F +R L+ V EIN +T Sbjct: 183 --FRVDYLPELREMLGVEPNEYIRFDNFEKRVLKQAVKEINEKT 224 >UniRef50_UPI00004A2E95 putative replication initiator protein n=3 Tax=cellular organisms RepID=UPI00004A2E95 Length = 392 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/228 (21%), Positives = 104/228 (45%), Gaps = 6/228 (2%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N +V+ N L A+Y+L ++R++ L V + R+++ ++ D + I Y FG+ Sbjct: 2 NKNLVVKDNALINASYNLELVEQRLILLAVVEARRTNQEIKSDDFLT-ICAENYINEFGV 60 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A + ++ A + Y+ G+++ S W ++ + + + + Sbjct: 61 HRNVAYQALKDACSHLFERRFT-YQKLTPKGNKETITS-RWVQSVSYVENEAIVRLKFSD 118 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 + P L+ FT + L + +T+ YA+RLYE + +R + + ID + R Sbjct: 119 DVAPLITLLEKNFTSYELEQVAGLTSKYAVRLYEIIIAWRTKGRTPM--FDIDELRNRLG 176 Query: 194 -LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 + Y RM +R+ + V ++N +T + ++Y + K GR+ F Sbjct: 177 VINDEYPRMETLKRKVIDFAVKQVNDKTDIDITYEQHKNGRKIVGFTF 224 >UniRef50_B6D407 RepA n=1 Tax=Capnocytophaga canimorsus RepID=B6D407_9FLAO Length = 357 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 108/236 (45%), Gaps = 31/236 (13%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG----- 72 ++QS LT A Y + +KR+LY V+ +++ L E + + + + +FG Sbjct: 8 LIQSYILTTAKYDYTAYEKRILYRVVELMQE----LTEEKKLNQKYSVQ-TNLFGDVDIQ 62 Query: 73 LTSAEASKD--------IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 + + KD ++ALKS K++ + D K ++ F I+R + Sbjct: 63 MPVSSFLKDENDQNYGIAKKALKSLNSKQIEY-------EDNKVWKLFN-LIERPVIDKK 114 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G + ++P + F+ F ++ L + + YAMR YE + KP ++ Sbjct: 115 GYVTFRLHPIIASVFLDFSKGFRKYELKTAMQFESVYAMRFYELMSGQEKP-----LTYL 169 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 ID + +++L YQR+ DF R+ + V E++ ++P Y K+G++ I F Sbjct: 170 IDDLKNKFKLENKYQRINDFFRKVIDVAKRELDKKSPYSFEYKINKQGKKFHSITF 225 >UniRef50_B1BR22 Initiator RepB protein family n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BR22_CLOPE Length = 443 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I QSN L + YSLS + ++++ + ++ D +E E + ++I ++ Sbjct: 11 ITQSNKLAYSKYSLSLNAQKLIMILAAHVQPDDEDFKE----IEFKAIELSKILDISVDN 66 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 +D+ K K +V ++ +D D+ + F+ A G + +P + P Sbjct: 67 IYRDLPNITKELVSK-LVLFKSTDDFKDKNFIQG--TFLSTAEYRD-GKVLLEFSPKVKP 122 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ- 196 + + L+ F++F+L T + Y+MR Y+ L + G I+ ++ + E L Q Sbjct: 123 YLLALKRCFSKFKLESTLNFKSKYSMRFYQ-LFKANYIKGEFII--EVSELRELLNLTQK 179 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 SY + F+ R L V V EIN+ T + +S+ K R+T + F Sbjct: 180 SYLKYYTFKNRVLNVAVEEINTHTDLNVSFEPIKFKRETVKLKF 223 >UniRef50_B5Z4W0 Plasmid replication protein n=1 Tax=Escherichia coli O157:H7 str. EC4115 RepID=B5Z4W0_ECO5E Length = 336 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 24/239 (10%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I QSN +T+ Y ++ D+ R+L L + +I + D + + I ++ E+F + Sbjct: 14 IFQSNAITDGVYKITLDEFRLLNLAISKISRHD----KPEKRIRITTKEFVEVFNIKDKN 69 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS---PSRGLYSVHINPY 134 + GK + Y ++D+G +K W + + + + Sbjct: 70 VKNRLSAIADGLLGKTIDTYSFDQDSG-KKTKRRRLWLSEVEYDIEGEENVFLEIVFSTE 128 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRK-----------PDGSGIVSL 183 + L++ FT F L T+P++ R+Y LC+YR D + Sbjct: 129 ISDLLFQLKDNFTLFALRAISAFTSPHSFRIYAWLCKYRNMYNYRKGELITTDTISVYDF 188 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 K+ L +SY+ +++ ++ +NEINS T + + E K R+ I FSF Sbjct: 189 KV-----MLGLEKSYEEYKFLKQKVIERSINEINSSTDISVVLNEYKASRKVIAISFSF 242 >UniRef50_C6QRE9 Initiator RepB protein n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRE9_9BACI Length = 391 Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 14/223 (6%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + +SN L EA Y L +++++ I D Q + + ++ E+ G S Sbjct: 16 VSKSNSLVEARYKLGTMEQKVIAAIASNISPDDKDFQTYT----FSIKEFKELIGSKSKN 71 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 +I + + +P E W K ++ G +V +P L P Sbjct: 72 IYHEIDKVMTRLM-------QPFNFINAEGKPTKIAWLSKATYNVGEGTVTVRFDPDLKP 124 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 FF+ L +FT+++L + Y++R+YE L Y +G + + + + + Sbjct: 125 FFLFLNEKFTRYKLGNIIHLRRSYSIRIYELLKSY---EGLAERTFTLKELRGKLGVEDK 181 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 Y +FR+R L E+ +T + +Y KKGR + F Sbjct: 182 YPNWINFRQRVLDPAQEELEEKTDIMFTYEPIKKGRSVEKVKF 224 >UniRef50_Q629K5 Replication protein n=2 Tax=Haemophilus somnus 129PT RepID=Q629K5_HAES1 Length = 323 Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 17/230 (7%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N I +S+ + EA Y L+ ++R++ L + K D E+ + ++V YAE F L Sbjct: 2 NDLIIRKSHPIVEAGYKLTIAEQRIILL---SLAKLDNRNIENSNVT-LYVKDYAEAFNL 57 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA-HSPSRGLYSVHIN 132 + A ++ +A K + ++ G+++ E F W R + G S + Sbjct: 58 SETSAYSELERASKRLYDRSIIL------KGEDETTE-FRWIESRTKYHKGEGRISFQFS 110 Query: 133 PYLIPFFIGLQNR--FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 ++P+ L R FTQ+ L + Y++R+YE K G ++ID + Sbjct: 111 RRVMPYLFELDKRLGFTQYELLSVSGFKSAYSIRMYELAI---KLLGMRNQQVEIDELRR 167 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 QL YQ +R + + NEIN ++ + L+ K+GR+ + F Sbjct: 168 ILQLDDKYQEFKRLKRDVINLACNEINEKSDLLLNIEPVKRGRKIIALEF 217 >UniRef50_C6S581 Putative initiator RepB protein n=1 Tax=Neisseria meningitidis alpha14 RepID=C6S581_NEIML Length = 111 Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 2/103 (1%) Query: 142 LQNRFTQFRLSETKEITNPYAMRLYESLCQY-RKPDGSGIVSLKIDWIIERYQL-PQSYQ 199 ++ RFT + + + ++++ YAMRLYE QY K G G + + + + R+ L P Y Sbjct: 3 IEKRFTVYEIEQVAQLSSGYAMRLYEFFMQYFDKQTGKGWLEVSLVDLRFRFGLLPNEYA 62 Query: 200 RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 R+ +F+ R + +NEIN +T + +Y ++K GR T F F Sbjct: 63 RIGNFKTRVIDYSINEINKKTDLTATYEQRKNGRVITGFRFEF 105 >UniRef50_Q8ETT4 Replication protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8ETT4_OCEIH Length = 279 Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/246 (23%), Positives = 105/246 (42%), Gaps = 20/246 (8%) Query: 10 KKRKNSPRIVQSNDLTEAAY--SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY 67 KKR N ++ QSNDL EA Y L+ + +++ V +I KS V ++ Sbjct: 5 KKRDNKVQVCQSNDLIEAIYEEGLTATEHKIIRYAVAKINKSPDQFPN----VSFTVLEF 60 Query: 68 AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLY 127 GL+ +++ + K++ E D G FPWF + + G+ Sbjct: 61 INAAGLSGNSYHGKVKKIVGELKRKQIRIKPREHDWG-------FPWFKEIIYK--NGMV 111 Query: 128 SVHINPYLIPFFIGL--QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 + N + + I L Q ++T++ + + +PY +RL+E L QY G +K+ Sbjct: 112 HITFNDLIKSYLIYLSEQEKYTKYAFATIGHMQSPYTIRLFELLQQYAMI---GHRKIKL 168 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 + + E + Y+ F+ R LQ E+++ + ++ E K R+ I F + Sbjct: 169 EKLKELLGVKGKYKEYGHFKSRILQSVKKELDNINVLTFTFEEIKMVRRVDEIYFDIKIN 228 Query: 246 TSMTTG 251 + T Sbjct: 229 DDLNTA 234 >UniRef50_Q83Z35 RepB n=4 Tax=Helicobacter pylori RepID=Q83Z35_HELPY Length = 438 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 10/194 (5%) Query: 57 DGICEIHVAKYAEIFGLTSAEASKD----IRQALKSFAGK----EVVFYRPEEDAGDEKG 108 D ++H +EI G + S+D I+ +S + + E + Y P +E+ Sbjct: 64 DKDFQLHEVPISEILGEVLSHESEDNYTYIKNLCRSLSKRILEDESLVYNPV-TKKEEEM 122 Query: 109 YESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYES 168 +E F + + + + +N L P+ +GL FTQ L I + YA+R+Y+ Sbjct: 123 FEVMAIFKRIQYLKRKAVICYQLNDCLKPYLLGLSKNFTQIPLQHILPIRSGYAIRIYQI 182 Query: 169 LCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIE 228 L K + + V L + + + +P+SY DF+ L+ + EIN+ T + SY Sbjct: 183 LLSELKQNRNE-VDLYLINLQDVLCVPKSYYAWKDFKNNVLEPSLKEINATTDILASYRT 241 Query: 229 KKKGRQTTHIVFSF 242 KK+ ++ T IVF Sbjct: 242 KKERQKITQIVFEI 255 >UniRef50_C8Q107 Replication protein n=2 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q107_9GAMM Length = 455 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 106/233 (45%), Gaps = 15/233 (6%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 IV N L A L++D++R + +RK+ + H + +A+ + + Sbjct: 135 IVLQNRLLNAISDLNQDERRFVIFLSPLVRKA-VDINPHQRNFTVVAKDFAKEYDIAEKH 193 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 + +++ KS GK VFY A + + W + G+ V + +I Sbjct: 194 VYEKLKKISKSIHGK--VFYYWNFRANKKANLKGVSWIGTAEYKDREGMVEVSLLDEVIQ 251 Query: 138 FFIGLQ--NRFTQFRLSETKEITN--PYAMRLYE--SLCQYRKPDGSGIVSLKIDWIIER 191 N FT++ E K I N + + L+E S C ++ S +I+++ E+ Sbjct: 252 MLTVFDKSNPFTKY---ERKHIANLGSHGIILFELISSCMHQLFKSK---SYEIEYLREK 305 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 + +Y + +F+R + + +I S TP++++Y +KK G++ T ++FSF D Sbjct: 306 FNCRDTYLPIAEFKRNVIDKAIKDIESNTPLKINYEQKKTGKKVTELLFSFYD 358 >UniRef50_Q9X3R7 Replicase n=2 Tax=Riemerella anatipestifer RepID=Q9X3R7_RIEAN Length = 309 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 28/230 (12%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I Q N +T Y S +LY+ + + K H EI + + Sbjct: 13 IYQHNVITSGRYDYSACMLDILYMVLSGLEKDKLEYNIHVQDIEIITGRKWNL------- 65 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 K +R++ ++ + PE +E F + + G ++V +N +P Sbjct: 66 --KQLRESTENIGSRMFEIETPE-------SFEQLWLFSRVKYLKGTGSFTVKLNDEAMP 116 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL--- 194 +F L+N FT +L ++ YA RLY CQ+R GI +I+ + + L Sbjct: 117 YFFDLKNNFTSMQLKSVLNCSSKYAKRLYAIACQWR---SVGIKRFEIEELKKMLGLIDK 173 Query: 195 --PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQ----TTHI 238 + ++R+ DF++ L V +I+ T + L + KK+GR T HI Sbjct: 174 KGNEQFERISDFKKFVLDVAREQISENTDIELDFELKKRGRSFHWITLHI 223 >UniRef50_B5A7F5 RepA n=2 Tax=Bacteroides RepID=B5A7F5_BACUN Length = 325 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 21/209 (10%) Query: 9 HKKRKNSPRIV--QSNDLTEAAYSLSRDQKRMLYLFVDQIR-----KSDGTLQEHDG-IC 60 KK K IV Q N LT A Y +KR LY + IR +G D I Sbjct: 2 EKKDKKQRDIVLSQDNALTTARYKFDLIEKRALYSIIRNIRAQYIENENGRRDLFDDLII 61 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 IH E+ ++I ALK +++ + +EK + S + H Sbjct: 62 TIHEE---ELKKCGDNTKMQNIYDALKRLRNRDI-------EINNEKMWLSIGFVNYVKH 111 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 ++ + V ++ ++P+++ L FT + ++ + + ++ R YE CQYR +G Sbjct: 112 IKNKSYFEVQVSKEVLPYYVELAQNFTSYSMTVAIALKSTFSQRFYELCCQYR---NAGF 168 Query: 181 VSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 ++ + E + L + Y+R DF+RR L Sbjct: 169 FFYTVEKLREMFMLEKKYKRGCDFKRRVL 197 >UniRef50_A8UX05 Replication initiator protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UX05_9AQUI Length = 333 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 12/222 (5%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 ++ +SN L EA Y L+ ++ R++ ++ I D + I V I L Sbjct: 14 KVTKSNKLIEAKYRLTLNEVRLILAYISLISPVDNGFP----VARIKVKDLKGILELNGE 69 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 + + + L+ + + + EE+ G+ W + ++ +G + ++ L Sbjct: 70 SMYEALSRTLEKLRSRVIKIQKLEEN-----GFIITGWIDRAEYNGRKGELEIVLSKDLE 124 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 P+ + L+ FT ++L + + YA+R+YE L QY K G KID + E Sbjct: 125 PYLLHLRKNFTTYQLRYVLRLRSVYAIRIYELLKQYEK---VGKRVFKIDELKELLGAED 181 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 Y+ F+ + L E+ +T + S+ E K+G++ + Sbjct: 182 KYRLYGHFKNKVLLKAQRELEEKTDISFSFREIKQGKKVVAV 223 >UniRef50_Q6J2B8 Replication protein n=2 Tax=Gammaproteobacteria RepID=Q6J2B8_PSEYM Length = 284 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/235 (21%), Positives = 102/235 (43%), Gaps = 17/235 (7%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I N LT + L+ +KR++ + ++ I+ +YAE FG+ Sbjct: 49 ITMGNALTRSGQGLTLAEKRVVGCALSKMDSRKAVPIGTIPTTRINATEYAEAFGIDLDT 108 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFP------WFIKRAHSPSRGLYSVHI 131 A ++ A + + FY + A +G P W + + G ++ Sbjct: 109 AYNQLQSAANQLYKRSITFY---QAASSRQGKPLPPTRVQMRWVGRVHYQKGEGWVELYW 165 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 P L+P GL+ +FT ++L + + + Y+ RL E L +++ +G + + I+ + Sbjct: 166 WPELLPQLTGLRKKFTSYQLQQASALRSIYSWRLLELLTRFQD---TGWLEITIEDFAQ- 221 Query: 192 YQLPQSYQRMPDF---RRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 + + ++M +F RRR ++ V E+ + + + KKGR+ + F F+ Sbjct: 222 -SMDATEKQMANFAAIRRRIIEPAVKELTEKDGWLIDWRAIKKGRKVAMLRFDFK 275 >UniRef50_UPI0001C42EDF initiator RepB protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42EDF Length = 398 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 21/243 (8%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 AE +++ K + QSN L E L+ +KR++ ++ D + H Sbjct: 3 AEQLILSDSKVSPEYLVTQSNSLIETPQDLTLQEKRIILTLASLVQPGDDNFRIH----R 58 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 I V A+I G+ + ++ K V E+ + W + Sbjct: 59 IKVKDLADIIGIKEKNFYTKVENVIEKLQNKMVTI-------ETERSKLNMHWLSSSEYF 111 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 +G + + L PF + L+ +T F+L + + Y +R+YE L QY K V Sbjct: 112 KGQGYVELEFSEKLRPFLLELKQNYTPFKLRNVLRLRSEYYIRIYELLKQYEK------V 165 Query: 182 SLKIDWIIE-RYQL---PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 ++ + E RY L P Y++ + R + E+ +T + + E+K+GR+ Sbjct: 166 KKRVFSLEELRYHLNIPPDKYKQYAHLKNRIILRAQEELKEKTDLIFEFQEQKEGRKVVG 225 Query: 238 IVF 240 + F Sbjct: 226 VAF 228 >UniRef50_A9VVF2 Initiator RepB protein n=14 Tax=Bacillus cereus group RepID=A9VVF2_BACWK Length = 404 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/226 (21%), Positives = 99/226 (43%), Gaps = 14/226 (6%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + +SN L EA L+ ++++L I +D + + + + ++ GL + Sbjct: 15 VSKSNTLIEANSRLNLVEQKILLCLASNIEPNDRDFKTYT----FPIKHFHDLLGLNGST 70 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 ++ + K K V+ R E W ++ ++G + +P L P Sbjct: 71 KYSELSKITKELLSK-VIEIRTGEVLI------QVSWLSSAIYNRNKGTIDMRFDPLLKP 123 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 F + L ++FT +RL+ ++ + YA+R+YE L QY I + + ++ + Sbjct: 124 FLLELSSKFTSYRLANVVKLKSTYAIRIYELLKQYEDLKERTISLENLRYYLDAMDI--- 180 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 Y +F++R L+ E++ +T + + E K GR+ I F R Sbjct: 181 YPNYANFKQRVLKPSQKELDQKTDISFEFEEIKLGRKVQKIKFIIR 226 >UniRef50_D2QUY6 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QUY6_9SPHI Length = 323 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 4/121 (3%) Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 S+G+ +V +N +L+P+ I L +T+ +L + + YA LY LC++ + Sbjct: 111 SKGVLTVEVNKHLVPYMIDLSKGYTKLQLQAALSLNSQYAQNLYTRLCKFLDTGIWRVSV 170 Query: 183 LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 + + I++ Q Y R +F++ L + EIN +T + + EK++GR T ++F+ Sbjct: 171 IDLKDILD----AQQYVRWSNFKQTVLARAMEEINQKTDIEVFVNEKREGRFITTLIFTI 226 Query: 243 R 243 + Sbjct: 227 K 227 >UniRef50_Q52204 Putative plasmid replication protein n=2 Tax=plasmids RepID=Q52204_9ZZZZ Length = 294 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 18/230 (7%) Query: 17 RIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 ++V++N++ + A L +++ V +++ D E+ + +Y ++ G+ Sbjct: 40 KVVKANEIIQRAQCDLGLLEQKTFCYAVSKVKPDDIAGTEY----TFSINEYCDVCGINR 95 Query: 76 AEAS--KDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + ++++ ALK K FY +E+ Y W K SP G + + Sbjct: 96 NDGRTIENVKSALKRLRDKS--FYLQDENGN----YVLIGWLGKARVSPKSGKIKIKFDE 149 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 + + GL N +TQ+ L + + Y++RLYE L Y +G+ + + + + Sbjct: 150 DMQKYLTGLYNNYTQYSLLCVLPMKSAYSIRLYELLKSY-----AGLHRKEFEIESLKAK 204 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 L Y + RR+ L V V EIN T + +S+ KGR+ I F + Sbjct: 205 LCAPYSDFYEVRRKVLDVAVREINLYTDLEVSWQPINKGRKVVKIHFDIK 254 >UniRef50_C4B6A3 Putative replication protein n=3 Tax=Clostridium botulinum RepID=C4B6A3_CLOBO Length = 348 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 114/255 (44%), Gaps = 34/255 (13%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 +IN+K+++ ++++N L EA Y+L+ + R+ L + + +K G + C + Sbjct: 1 MINNKEKQ--KILIKNNILIEAKYNLNLVENRIFTLLLYKFQKEKGKVLT----CTLSYE 54 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 ++ + + I LKS K+++ +E++ + W+ +++ G Sbjct: 55 EFKNVIKNKNENTINGIINILKSLQRKQIIIKERKENSKNT------IWY---SYNLING 105 Query: 126 LY------------SVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR 173 Y + I L +F+ N +T +S + N YA RLYE L R Sbjct: 106 FYFDDEHNIFIIEATARIYKLLQEYFV---NGYTPINISILLGLNNYYAQRLYEIL---R 159 Query: 174 KPDGS-GIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKG 232 G+ I++ ID + E Q+ Y DF+RR + + E+N ++ + E KKG Sbjct: 160 LWSGTKSILNYTIDELKELLQIKDLYSLYGDFKRRVIVPAIKELNKTGFFQIDFKEIKKG 219 Query: 233 RQTTHIVFSFRDITS 247 R+ I F +D+ + Sbjct: 220 RKVISIDFLVKDLDT 234 >UniRef50_B2UKE3 Initiator RepB protein n=2 Tax=Ralstonia pickettii RepID=B2UKE3_RALPJ Length = 251 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 15/232 (6%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGT-----LQEHDGICEIHVAKYAEIFG 72 + SN LT AA+SL+ +KR++ I K+D +E + A+YAE FG Sbjct: 21 VTMSNALTRAAHSLTLAEKRLI---AACIAKNDSIPFVELRREGAWRVRLSAAEYAEAFG 77 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + A + ++ A S + V R +E F W + G + Sbjct: 78 VDANTAYEQLQGASDSLFNRYVRTVRETRRGPEEF---KFRWVGSAKYHKGEGWIELVWF 134 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 ++P GL+ FT ++L + + + YA RL+E C ++ +G + I+ Sbjct: 135 QEVVPHLFGLRQEFTTYKLRQAAALRSVYAWRLFE--C-FKSWAATGRYTPTIEEFHRAM 191 Query: 193 QLPQSYQR-MPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 +S ++ D RRR ++ V E+ + + + + + GR+ + F FR Sbjct: 192 DASESQRKNFKDLRRRVIEPAVKELREKNGLHIEWEPETAGRKVVKLDFRFR 243 >UniRef50_Q0QVZ7 Putative replication initiator protein n=2 Tax=Neisseria lactamica RepID=Q0QVZ7_NEILA Length = 245 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 105/228 (46%), Gaps = 16/228 (7%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +V +N +T+A L+ +KR+++ I K G + + G ++ ++Y+ + + Sbjct: 20 VVMANAITQAGQGLNLAEKRIIFAV---IAKMSGKI-DSSGFVKLTASEYSATYNIPVDL 75 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGY--ESFPWFIKRAHSPSRGLYSVHINPYL 135 A ++ A + + + ED D KG F W + G + + ++ Sbjct: 76 AYTQLKSASEGLFNRYISL---RED--DAKGVLVSRFRWLDACKYHDGCGFVIISFSKHV 130 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 IP+ I L +FT+++L + + + Y+ RL E L K + + + ID + ++ P Sbjct: 131 IPYLIDLDEKFTKYKLQQACALRSVYSWRLLELL----KQQSNCWLHISIDDLHYAFETP 186 Query: 196 QSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 S + R + ++ V E+ ++ R+ + +K+GR+ ++F F Sbjct: 187 ASIRNNFGKLRSKIIEPAVRELTAKDGWRIEWEAQKEGRRVASLLFKF 234 >UniRef50_C9A1Q4 Replication protein n=8 Tax=Lactobacillales RepID=C9A1Q4_ENTGA Length = 244 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 5/155 (3%) Query: 97 YRPEEDAGD-EKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETK 155 YR +E D ++ + F F + S+ V +NP L GL ++F+LS Sbjct: 83 YRTDEINEDGDRVIKRFVLFTGFEINVSKMFVDVSVNPKLDYIINGLTTEVSRFKLSAFT 142 Query: 156 EITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNE 215 I + YA L+ L QYR +G ++I+ ER +P+SY++M ++ LQ + E Sbjct: 143 SIRSTYAKTLFRLLMQYR---STGYYIVRIEDFKERMDIPESYRQMGQIDQKVLQPALRE 199 Query: 216 I-NSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 + N + ++++ I+ KKG + + F+F + + T Sbjct: 200 LQNYFSDLKVAKIKAKKGNKIAKLEFTFSGLKTDT 234 >UniRef50_Q45152 RepA protein n=3 Tax=Bacteroides RepID=Q45152_BACFR Length = 331 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 103/237 (43%), Gaps = 31/237 (13%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQ-----------EHDGICEIHVAK 66 ++QS +T A Y + +KR++Y V+ + G LQ EHD I++ Sbjct: 8 LIQSYIMTTAKYDFNVYEKRIIYRLVEM---AQGELQGIKFANNCQKIEHDLFSCINIT- 63 Query: 67 YAEIFGLTSAEASKD---IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 I L + E K+ +++AL+S K +F +++ + P+ KR+ Sbjct: 64 -MPIACLLNGEEDKNYARVKEALQSLQRK--IFEYEDDEVWQSISIIALPYIRKRS---- 116 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 + S ++P + + + ++ L + ++MR YE L + P + Sbjct: 117 -SVISFQVHPRVWDCILNFSKGYRKYELKAAMSFKSQFSMRFYELLSNQKTP-----LIY 170 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 ID + E + + Y+R+ DF R+ ++ E++ +P + K GR+ T I F Sbjct: 171 SIDQLKEMFCVADKYKRVNDFMRKVVEAAKKELDEVSPYTFEFTPLKSGRKITAIKF 227 >UniRef50_C4GNB8 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GNB8_9NEIS Length = 337 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/228 (22%), Positives = 106/228 (46%), Gaps = 13/228 (5%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +V+SN+L A+Y+++ +++R+L + QI S TL ++ + + V + ++F + Sbjct: 11 VVKSNELITASYAMTVNEQRLLLACIGQI-DSRTTL-DNGAVFRLSVEQARDLFYTKGDQ 68 Query: 78 --ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKR-AHSPSRGLYSVHINPY 134 A +D++ A + ++V PE+ E F++ P G + Sbjct: 69 RHAYRDMQDACERLFERKVRIALPEKQ-------ELLTRFVQSIVFDPENGTADLRFAYE 121 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 ++P+ L+ FT++RLS ++T+ +A+R+YE + + G ++ID E L Sbjct: 122 ILPYLSQLEANFTKYRLSNIVQLTSSHAVRIYELIVSW-ATQGQYYKEIEIDAFRELLGL 180 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 + Y++ + + R + +IN T L +K R I F Sbjct: 181 GEKYKQNSELKARVTIPAMQQINESTDFELDISFRKSKRTFKWIQLRF 228 >UniRef50_D0U573 Replication initiation protein RepB-like protein n=1 Tax=Psychrobacter sp. J466 RepID=D0U573_9GAMM Length = 309 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 22/225 (9%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQI-RKSDGTLQEHDGICEIHVAKYAEIF--GLT 74 +VQSN+L AAY+++ +K++L + +I + D + V + A+IF T Sbjct: 6 VVQSNELVLAAYTMTTKEKQLLLTCISRIDSRPDAPNITKQTKFTVTVEEVAKIFYTDST 65 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A +D+ QA +EV+ A ++ + + P+ ++ Sbjct: 66 KKNAFRDLEQASNRLFDREVLI------ALEDNKTLRTRFVSGVLYDPNGEQITITFAED 119 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLC------QYRKPDGSGIVSLKIDWI 188 ++P+ L+ FT++RL E E+++ ++MRLYE + QY K S+ +D Sbjct: 120 VLPYLTQLKANFTKYRLMEVSELSSIHSMRLYELIVCWVGQYQYTK-------SMDLDDF 172 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 + Y++ R R ++ ++E+N T +++ KK R Sbjct: 173 RYVMGIKGKYKQFGQLRERVIETAIDEVNESTNYKITVEYHKKSR 217 >UniRef50_Q4HN85 Initiator RepB protein family n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HN85_CAMUP Length = 370 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 108/230 (46%), Gaps = 30/230 (13%) Query: 24 LTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIR 83 LTEA L+ + ++ Y V I+ SD +E+ EI + K+AE L + R Sbjct: 25 LTEARSKLTALEYKIFYQIVTLIQMSDEEFKEY----EIDILKFAEALNLPTTN-----R 75 Query: 84 QALKS--FAGKEVVFYRPEEDAGDEKGYESFPWF--IKRAHSPSRGL--YSVHINPYLIP 137 + LK+ + + VFYR D K ++ F K H + + +S I PYL+ Sbjct: 76 EFLKNTCLSLAKQVFYRD----YDNKNFDVINIFQSFKYRHKEQKIIIKFSEDIKPYLLQ 131 Query: 138 FFIGLQNRFTQF-RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 +FT+ ++ K + YA+R Y L YR+ ++ + + +LP+ Sbjct: 132 L-----KQFTKIHQIKYIKSFDSKYAIRFYTLLKDYRQMTYR---EFSVEALCKMLELPK 183 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIE--KKKGRQTTHIVFSFRD 244 SY+ D + ++ + EI++++ + ++ E KK G++ TH SF++ Sbjct: 184 SYKSFSDIYKYVIEPALREIDAKSDLEITNYEITKKIGKKITHFKISFKN 233 >UniRef50_O68836 RepA n=3 Tax=Francisella RepID=O68836_FRATU Length = 339 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/234 (22%), Positives = 102/234 (43%), Gaps = 25/234 (10%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I SN L YSL+++++ +++L +++ D + +I ++ + G+ Sbjct: 13 IAMSNTLVAGKYSLTKEEQNLIFLVASMVKREDKEFHRY----KISLSDLEKATGVKHNR 68 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 ++Q + S K V + + + WF P + L+P Sbjct: 69 VR--LKQLMHSIMSKPVWLNKEQTKIAN--------WFAYIEADPKSSALICEFHWSLMP 118 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS-----LKIDWIIERY 192 I LQ FT+ + Y+ RLY L + + + +G + L +D +I + Sbjct: 119 HMIQLQEYFTKAERQLLFSFKSKYSSRLY-LLLKSKLGEQAGYANIVDCVLYVDDMINDF 177 Query: 193 QLPQSY-QRMPDFRRRFLQVCVNEINSRTPMRLSYIEK----KKGRQTTHIVFS 241 LP+SY R +F+ +FL + EIN + + ++Y +K K GR+ T+I F+ Sbjct: 178 DLPKSYSNRYSNFKNKFLLPALEEINQLSDIFVTYDDKDHHRKHGRKITNIKFT 231 >UniRef50_Q83XW3 RepA n=1 Tax=Flavobacterium psychrophilum RepID=Q83XW3_FLAPS Length = 314 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/216 (22%), Positives = 92/216 (42%), Gaps = 23/216 (10%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 +I+ SN +T + ++ Q +L++ + + K+D +E+ + +I LT Sbjct: 11 KIMMSNSITSGRFDVTACQLDILFMLLSSLEKNDAVDKEY-------IISALDIEALTKK 63 Query: 77 EAS-KDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 + + + +R++ + F + + DEK + + K + + G + V INP Sbjct: 64 KWNYQQLRKSTEDFGSRMF-------EIEDEKSLKQIWLWSKVEYYHNTGAFGVLINPIA 116 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL- 194 +F L++ FT +L T+ YA RLY CQYR + +D + L Sbjct: 117 RQYFFELKDNFTSLQLKSVLNCTSKYAKRLYSIACQYR---NMKFNPMPLDEFKKMLGLI 173 Query: 195 ----PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSY 226 +Y+ ++ L V +IN T +R Y Sbjct: 174 DKNGKDTYENATALKKNVLDVAKKQINENTDIRFDY 209 >UniRef50_Q1PHH6 PCZ2.1 n=1 Tax=Planococcus sp. ZOYM RepID=Q1PHH6_9BACL Length = 391 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 18/230 (7%) Query: 18 IVQSNDLTEAAYS--LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 + QSN L +A Y LS Q++++ V +I+ D + I E+ + + E+ GL Sbjct: 7 VTQSNSLVDARYHEPLSARQQKIVLSVVSKIQIDDEDFK----IYEVRIRDFHEMLGLEG 62 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKG-YESFPWFIKRAHSPSRGLYSVHINPY 134 ++++ + K + R EKG + WF + G +P Sbjct: 63 EPKYTEMKKITEELLKKSLEITR-------EKGRFLQVNWFSSIEYFEHEGRIEFSFDPK 115 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 L P+ + L+ +T +RLS +++ ++RLYE + +K + G + I+ + +R + Sbjct: 116 LKPYLLDLKKAYTSYRLSNILSLSSASSIRLYELM---KKWEYLGKWEITIEKLKDRLGI 172 Query: 195 PQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 Q SY +F+ R + +NE+N +T +++S+ E K GR+ F+ R Sbjct: 173 KQQSYNVYGNFKNRIIVPSINELNEKTDIQISFKEIKTGRKVVGFEFTIR 222 >UniRef50_B1FHX4 Initiator RepB protein n=2 Tax=Burkholderia ambifaria RepID=B1FHX4_9BURK Length = 283 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 4/129 (3%) Query: 114 WFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR 173 W K + G + +P L P LQ RF ++L + + + Y+ RL E L + R Sbjct: 142 WVWKAIYHEREGWAEISFSPDLTPHIFMLQRRFVSYQLEFARGLQSLYSWRLLELLMRER 201 Query: 174 KPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 G + + ++ ++P +Y R D +RR ++ VNE+N++ + +S+ K GR Sbjct: 202 D---RGRLLITLEDFRSVLEIPSTY-RFADIKRRVIETAVNELNAKADLVVSWTPVKLGR 257 Query: 234 QTTHIVFSF 242 + F F Sbjct: 258 AVNSLDFQF 266 >UniRef50_Q46088 Replicase n=2 Tax=Bacteria RepID=Q46088_CAMHY Length = 337 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/234 (20%), Positives = 104/234 (44%), Gaps = 19/234 (8%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG- 72 N + QSN + A Y L+ +++++ L + Q+ D + G +I + + + G Sbjct: 11 NRQIMAQSNKVITAKYELTEAEQKIILLAIAQV---DSIKDKKFGTYKITIPELEQKIGS 67 Query: 73 -LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 + A+ + R+ ++ VV+ + K ++ F W + I Sbjct: 68 KIKQAQLKETCRRLMQR-----VVYIE------NGKNWKMFHWISTAEYIDGENTIKFKI 116 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 + + PF + L+ FT+ L + Y +R Y+ C + + + ++ + E Sbjct: 117 SDEMKPFLLQLKGNFTKIELENALKFNGKYTLRFYQ-FCMQMQNQATKKRTFELSKLYEI 175 Query: 192 YQLPQSY-QRMPDFRRRFLQVCVNEINSRTPMRLSY-IEKKKGRQTTHIVFSFR 243 QLP+S F+ + ++ +NEIN+++ ++ ++ I KK G++ I +F+ Sbjct: 176 LQLPESLTTSFARFKLKVIEPSINEINTKSDIKANWEISKKIGKKIVEIELNFK 229 >UniRef50_B9VWK0 Putative replication protein n=1 Tax=Pseudomonas sp. CG21 RepID=B9VWK0_9PSED Length = 311 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 10/116 (8%) Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G V + +P+F L++ FT +L T+ YA R+Y CQYR G Sbjct: 103 GTVKVRLTEKAVPYFFDLKSNFTSLQLKAILSCTSKYAKRIYALACQYR---VMGTKRFT 159 Query: 185 IDWIIERYQL-------PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 ID E L P+ ++R+ ++ L V +IN T + Y KK+GR Sbjct: 160 IDEFKEMLYLKDPKGKAPEQFERISSLKKDVLDVAKKQINEHTDIHFDYELKKRGR 215 >UniRef50_D2QW11 Initiator RepB protein n=2 Tax=Spirosoma linguale DSM 74 RepID=D2QW11_9SPHI Length = 331 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 33/240 (13%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 S I Q N +T A Y S Q + + + +RK + DG+ EI V ++ LT Sbjct: 16 SVSIRQHNAITTARYEYSELQLDLFFYLLSILRKD-----KTDGVYEIVVK---DLSTLT 67 Query: 75 SAEASKD-IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 E +++A + + P K YE F + + G V ++ Sbjct: 68 GKEYKYGYLKKATEEMGSRMFEVSTP-------KSYEQLWMFQRVKYVIGEGRIEVRLSD 120 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ----------YRKPDGSGIVSL 183 + P+ L++ FT F L + + YA RLY +LC Y+ P+ ++SL Sbjct: 121 DIKPYLFDLKDNFTSFELYAALRLGSKYAKRLY-TLCSQWNDKGETPVYKIPELKKMLSL 179 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 D + + Y+++ +F+R L +IN T +++ Y K+GR + F+ + Sbjct: 180 LDD------KGNEQYKQIGEFKRFVLDEAKKQINEHTDLQIDYTLYKRGRSFQSVSFTIK 233 >UniRef50_Q3HYC5 Rep n=1 Tax=Actinobacillus pleuropneumoniae RepID=Q3HYC5_ACTPL Length = 337 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 3/128 (2%) Query: 117 KRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPD 176 +R+++ +G + + + ++P+ ++N +T L + + Y+++LYE L ++ Sbjct: 106 RRSYTKGKGSFMIEFHEDVMPYLAEIKNNYTSMLLDTFGSLKSEYSLKLYEILSRWA--- 162 Query: 177 GSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTT 236 G VS+K+D + + Y R +F +R L V EIN++T + +S + GR + Sbjct: 163 FKGFVSIKLDELKILLDVVGMYDRYNNFSQRVLTPAVKEINAKTNLIVSVKPIRTGRAIS 222 Query: 237 HIVFSFRD 244 + F D Sbjct: 223 ELEFKIFD 230 >UniRef50_C8PV51 Replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV51_9GAMM Length = 319 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/231 (20%), Positives = 105/231 (45%), Gaps = 16/231 (6%) Query: 22 NDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKD 81 N L A +L +++R++ +F+ + + + + + V + + +G+ S ++ Sbjct: 3 NRLLNAISNLELNERRLI-MFLSPLVRKEVDKNPYQSTFIVRVKDFQDEYGIKSKAYYQE 61 Query: 82 IRQALKSFAGKEVVFYRPEEDAGDEKGYES---FPWFIKRAHSPSRGLYSVHINPYLIPF 138 + S K F+ + K Y+S W K + ++G + ++ +I Sbjct: 62 LENICNSLQHKTYEFW----NFSANKKYKSKVKVTWITKGDYKDNQGEVHIDLHNDVIEM 117 Query: 139 FIGLQ--NRFTQFRLSETKEITNPYAMRLYE--SLCQYRKPDGSGIVSLKIDWIIERYQL 194 N FT+++ ++ Y + L+E S C ++K I+++ E++ Sbjct: 118 LTVFDKTNPFTKYQRQMIVKL-GCYGIILFELISSCLHQKNKTKAYT---IEYLREKFNC 173 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 +Y + +F+R L + +I TP+R++Y + KKGR T IVF+F ++ Sbjct: 174 IDTYPVISEFKRNVLDKAIMDIEKHTPLRITYTQVKKGRVVTEIVFAFENL 224 >UniRef50_Q19N19 Replication initiation protein n=2 Tax=Campylobacter RepID=Q19N19_CAMJE Length = 358 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/245 (20%), Positives = 112/245 (45%), Gaps = 10/245 (4%) Query: 3 ETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 +T+ +KKR + Q+N A Y ++ ++ +M V QI +L + +CE+ Sbjct: 2 QTSKKTNKKRIQKAVVTQNNRFVYAKYDMNTNELKMFMWIVAQINSQKDSLFQ---VCEM 58 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVV--FYRPEEDAGDE-KGYESFPWFIKRA 119 +++ E+ S E I+ + + K + F +E E + + P F Sbjct: 59 PLSEIFEVLNHQSEENYTYIKNLIDNMGKKTYIEDFKLLDEMTMKEVEIHRVMPLFQFIE 118 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESL-CQYRKPDGS 178 + S +N L+ + + + FTQ + ++ +++ + Y++R+Y L C+ ++ S Sbjct: 119 YKKGASSISYRLNDSLMQYLLDQKRDFTQLKFNDIQQMKSAYSIRIYNMLVCELKQNKQS 178 Query: 179 GIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK-KKGRQTTH 237 ++L + + ++P++ F + L+ +IN ++ + L I+ K GR+ T Sbjct: 179 LKINLAV--LQNLLEVPKTLLEYKHFNVKVLKQAEKDINGKSNLVLLEIKTYKTGRKITD 236 Query: 238 IVFSF 242 + F F Sbjct: 237 LEFIF 241 >UniRef50_Q3ZR50 Putative uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei RepID=Q3ZR50_LACPA Length = 246 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/239 (20%), Positives = 108/239 (45%), Gaps = 29/239 (12%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDG-------TLQEHDGICEIH 63 K++ P I S + +A + L+ + +++ V ++R+ D T++E + + E Sbjct: 25 KQQGYPVIKASQLVQKARHQLTAKELKLIDFMVSKVRRDDSGFRPLQTTIKEINQVME-- 82 Query: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 FG ++ + ++L S + K F + E+ + +++ A Sbjct: 83 -------FG-RGTKSLTETSKSLLSLSNKGFWFQKDEDTI-------TIARWLQTAEIKK 127 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 G ++ ++ L P+ + L Q+ LS+ + + Y++ LY+ L +R GS V+ Sbjct: 128 DGSATLELDEKLAPWLLKLVGSRAQYSLSDIVALRSKYSLMLYQLLMSWR---GSMGVNG 184 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 D +E + + + F R+LQ ++EIN +T +++ Y +K GR + + F Sbjct: 185 TPDEFLEFF--GHTNMKWWQFNGRYLQPAIDEINQKTGIKVHYAARKSGRTISEVEIDF 241 >UniRef50_UPI0001BCE2A8 replication protein B n=1 Tax=Campylobacter fetus subsp. venerealis str. Azul-94 RepID=UPI0001BCE2A8 Length = 267 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 16/138 (11%) Query: 118 RAH-SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPD 176 R H R SV ++ F L N FT+F L+E ++ Y +Y L QYR Sbjct: 95 RVHIDKKREFLSVRVSEAFAYIFNSLMNNFTRFELAEFVNLSGKYTKTIYRLLKQYR--- 151 Query: 177 GSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINS--------RTPMR-LSY- 226 +GI ++ + E +P+SY+RM D L+ + E++S RTP + L+Y Sbjct: 152 STGIFKIEFERFKEILDIPKSYKRMSDIESDILKPAIKELSSERSLFDQIRTPFKNLTYE 211 Query: 227 --IEKKKGRQTTHIVFSF 242 K KG + TH++F F Sbjct: 212 KGKTKGKGNKITHLIFKF 229 >UniRef50_Q0HPE2 Initiator RepB protein n=2 Tax=Gammaproteobacteria RepID=Q0HPE2_SHESR Length = 230 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/228 (19%), Positives = 109/228 (47%), Gaps = 15/228 (6%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + +SN L +A+Y L+ ++++ + +I + E ++ +++E+ G+ Sbjct: 7 VTKSNLLIDASYRLNVQAQKLVLACLSKIDSRPDS--EPKKEIKLTAIEFSELMGIDIKN 64 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI--NPYL 135 A +++ +A + K + R E + E+ ++I++ RG +V + + + Sbjct: 65 AHRELYKAADALF-KSSILLRNEHE-------ETELYWIQKKVKKLRGEGAVTLVWSDEV 116 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 + + L++ FT ++L + + +++RLYE L ++ + I +D L Sbjct: 117 LRYICQLKSHFTSYKLRNIASLQSGHSIRLYELLMRFNATNSRVIA---LDDFRSALGLE 173 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 + Y + + + ++ V E+N R+ + ++Y KKGR T + F+F+ Sbjct: 174 EKYPQFKELNKFVIKFAVEELNQRSDLVITYETLKKGRTVTALAFTFK 221 >UniRef50_Q4L2Y4 Replication protein Rep n=48 Tax=Staphylococcus RepID=Q4L2Y4_STAHJ Length = 288 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 5/137 (3%) Query: 107 KGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLY 166 + +E F F S+ IN L + FT+F L E + + YA ++ Sbjct: 86 RSFEKFILFTSYKVDLDEECLSISINSDLKHILNSITADFTKFELKEMTHLKSTYAKNMF 145 Query: 167 ESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINS-RTPMRLS 225 L QY+ +G V + +D R +P++YQ M D +R L+ +NE++ + ++ Sbjct: 146 RILKQYK---HTGYVKMNLDDFKNRLDVPKTYQ-MNDITKRVLKPIINELSQIFNNLHIN 201 Query: 226 YIEKKKGRQTTHIVFSF 242 I+ KKGR+ + F+F Sbjct: 202 KIKAKKGRKIEWLEFTF 218 >UniRef50_C7UIY7 Initiator Replication protein n=9 Tax=Lactobacillales RepID=C7UIY7_ENTFA Length = 242 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 7/147 (4%) Query: 97 YRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKE 156 YR E D D+ + F F + + V INP L GL F++F LS Sbjct: 83 YRDEYD--DDGSFRRFVLFTSFDVNVKKQTVEVSINPKLEGILNGLTTEFSKFELSAFTS 140 Query: 157 ITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEI 216 + + YA L+ L QYR +G + I+ E +P YQ M + ++ L+ + E+ Sbjct: 141 LRSTYAKTLFRLLMQYR---STGYYVVNIEEFRELLNIPDYYQ-MGNIDQKVLKPAMKEL 196 Query: 217 NSR-TPMRLSYIEKKKGRQTTHIVFSF 242 N+ + ++ I+ KKG + + F+F Sbjct: 197 NNYFEDLEITKIKAKKGNKIAKLEFTF 223 >UniRef50_Q0SW56 Initiator RepB protein family n=4 Tax=Clostridium perfringens RepID=Q0SW56_CLOPS Length = 320 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/219 (20%), Positives = 96/219 (43%), Gaps = 16/219 (7%) Query: 24 LTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIR 83 + ++Y LS ++++++ ++ +D + + ++ + E+ G+ + +I Sbjct: 14 IMNSSYDLSLEEQKIILTLASMVQPNDEEFKPYI----FKISDFMELLGVNTKTKYTEIP 69 Query: 84 QALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQ 143 + K K VF E+D + W + G+ + +P L P+ + L Sbjct: 70 KITKDLMKK--VFEIEEDDVIIQTA-----WLSSATYKKGSGIVELEFSPKLKPYMLKLN 122 Query: 144 NRFTQFRLSETKEITNPYAMRLYESL-C-QYRKPDGSGIVSLKIDWIIERYQLPQSYQRM 201 + FTQ++L+ + + Y+ R+YE L C +++K V +KI + + Y Sbjct: 123 SMFTQYKLANILSMKSKYSPRIYEILKCNEFKK---QNFVEIKITELRRLLKAENIYPLY 179 Query: 202 PDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 DF+R + E+ + + + E K GR+ T I F Sbjct: 180 SDFKRYIIIRTKKELKKLSDIWFEFEEIKTGRKVTSIRF 218 >UniRef50_B0V3W3 Putative replication protein n=2 Tax=Acinetobacter RepID=B0V3W3_ACIBY Length = 316 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 14/224 (6%) Query: 22 NDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKD 81 N +TE S+S D+KR+L + R D + E D I I ++A+ G+ A K Sbjct: 20 NKVTECFKSMSVDEKRILIMASPIARNVDAS--EQDQIL-ISAQQFADDCGIKVNSAYKQ 76 Query: 82 IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPF-FI 140 I A K + + +++G + + ++ A G+ + L+ + Sbjct: 77 IENASKKLVDRSFSYV-------NDRGKKVYSNWVIDATYEDAGISLRFTSIVLVMLKIL 129 Query: 141 GLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQR 200 N +T+++ ++ Y++ Y + + +G L +D + + LP+SY+ Sbjct: 130 DKYNPYTRYKKDVVLKLKKDYSIDFYHLAKKNQAKNG---FELTLDEMFTEFGLPESYRD 186 Query: 201 MPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 + + +RR L+ ++EIN T + + Y KKGR F+ ++ Sbjct: 187 LRNLKRRVLKSSLDEINEFTDVTVDYSPVKKGRSVVGFKFTVKE 230 >UniRef50_C9MTU8 Initiator RepB protein n=2 Tax=Bacteroidales RepID=C9MTU8_9BACT Length = 325 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 20/236 (8%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 K + +QS T A Y S +KR++Y V+ + + D + +I + Sbjct: 6 KGNELAIQSYIFTTAKYDFSAYEKRIMYRLVELAQDEIKGIMIRDNMHKIEPTLFGREIT 65 Query: 73 LTSAEASKD--------IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 + A+ +D ++A KS A K V + DEK ++ + + Sbjct: 66 MPVADILRDEKDQNYTIAKKAFKSLAQKGVEY-------EDEKIWQYTSIISSPKINKIK 118 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G + + + + ++ L + Y+MR+YE + ++P LK Sbjct: 119 GSVVFQVADDIWRCLLDFTKGYRKYELITAMGFKSVYSMRMYELMSGQKRPLEFTFEDLK 178 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 +R++L Y ++ DF+R L + E++ +P +YIE K+GR+ F Sbjct: 179 -----QRFKLKDKYSKVNDFKRWVLDIAKKELDESSPYSFNYIEVKEGRRVVSFKF 229 >UniRef50_Q93NB4 RepB n=11 Tax=Lactobacillales RepID=Q93NB4_9LACT Length = 275 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/230 (21%), Positives = 101/230 (43%), Gaps = 24/230 (10%) Query: 18 IVQSNDL-TEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT-S 75 +V+SNDL ++A + L+ +Q +++ + +I+ D +E E + + + + S Sbjct: 28 VVESNDLISKAKHDLTTNQLKIIDFLISKIKPDDKDFEE----LETSMYELTNVLEIKRS 83 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 I L KEV Y E ++ G+ S + K G + + L Sbjct: 84 GRTYNQIANTLDDLRKKEVTIYNQERESIVRTGWVSSAEYFKN------GKVILSFDKKL 137 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK------IDWII 189 P+ + L ++Q+ L +T ++ + YA+ LY+ + + + +G I L+ DW+ Sbjct: 138 APYLLDLSKNYSQYLLIDTVKLKSKYAILLYKLMREADRDNGKSITILQGTPEEFKDWL- 196 Query: 190 ERYQLPQSYQRMPDFRRRFLQVCVNEINSRT-PMRLSYIEKKKGRQTTHI 238 P++Y + L+ + EIN + M L ++ + GR+ + Sbjct: 197 ---GAPKNYN-YGRLKENVLKKAIEEINLKIDDMNLEILQGRYGRKVVQV 242 >UniRef50_A6TSD9 Initiator RepB protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSD9_ALKMQ Length = 240 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 23/211 (10%) Query: 20 QSNDLTE--AAYSLSRD-----QKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 +SNDL+E A L ++ + ++ + IRK D L+E+ EI ++++ ++ G Sbjct: 13 KSNDLSEWMATKILLKNPFTVMELKLFTCVLSMIRKDDD-LKEY----EISISQFMKMPG 67 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 TS I+QA + K V R GD + + ++ G V + Sbjct: 68 TTSKNVYDQIQQAGERLMQKIVTIQR-----GDRRIRVALMSSVETKMGG--GTVKVSFD 120 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P + P I LQ ++T++ L + + + +RLYE Q PDG +L +D I Sbjct: 121 PKIKPELITLQEKYTEYTLGNIMALRSTHTIRLYELFKQCL-PDGER--TLTVDEIKSHL 177 Query: 193 QL-PQSYQRMPDFRRRFLQVCVNEINSRTPM 222 + P SY+R D + + + + EI T + Sbjct: 178 TIAPDSYKRTNDLKEKVVDKSLEEIGELTDI 208 >UniRef50_A6DT85 Replication initiator protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT85_9BACT Length = 477 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/231 (21%), Positives = 100/231 (43%), Gaps = 22/231 (9%) Query: 18 IVQSNDLTEAAYSL---SRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + + NDL EA S+ +R++K + Y+ V I D +E+ + + + F + Sbjct: 13 VAKGNDLVEAKRSMHLTTRERKLVAYM-VSCISPYDDDFKEY----RFPIEDFIQFFSIK 67 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFP--WFIKRAHSPSRGLYSVHIN 132 A K+ + K E E F W + + + +++ Sbjct: 68 DKNAPKEYERIAHGIMSKPFTV---------ENDVERFTATWLSEAKYHKKQKIFTFRFT 118 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P L + I L+ +T++++ + N Y+ +YE L QY + G S+ ++ + Sbjct: 119 PSLKRYLIQLKKFYTRYKMINLIHMENCYSESVYELLKQY---ETIGKRSVSMEKMRTML 175 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 L + Y +FR + L+ V EIN + + ++Y E K+GR+ + + F + Sbjct: 176 GLERKYPLYSNFRVKVLEPAVEEINKYSDINIAYQEVKEGRKISGLNFEIK 226 >UniRef50_D1PH89 Initiator RepB protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PH89_9BACT Length = 421 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 22/213 (10%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I Q ND+T+A +LS ++ + I+K+ H ++ + + + ++ Sbjct: 51 ISQPNDVTQAISNLSAVERNCWLQILRGIQKNKDLPDGHPEKYQLTLTRSQLLECVSGHS 110 Query: 78 ASKDIR-QALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS-PSRGLYSVHINPYL 135 ++ D ALK+ + VF+ + G+ + + P + Y+V I P L Sbjct: 111 SNLDYAFNALKNITDSKKVFHSKD-------GHRIYAGLLSYVDEHPDQETYTVGITPVL 163 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL- 194 +P+F L + FT F + + Y+ R YE CQYR + I + + I + + L Sbjct: 164 LPYFTNLSSEFTVFDMYIEMSFKSVYSQRFYEFCCQYRNKEDK-IFFMTVHDIKKMFNLL 222 Query: 195 -----------PQSYQRMPDFRRRFLQVCVNEI 216 + Y+ DF++R L N+I Sbjct: 223 EIKDEKGNIIQKEQYKNGSDFKKRVLDKAKNDI 255 >UniRef50_A7ZGH9 Putative pNL871104_p1 n=1 Tax=Campylobacter concisus 13826 RepID=A7ZGH9_CAMC1 Length = 319 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 74/146 (50%), Gaps = 10/146 (6%) Query: 106 EKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRL 165 EK +E++P + + G N Y+ P+ + + FT++++ +T+ Y++R+ Sbjct: 81 EKVWEAYPIYQVFKYDKDTGEIKFKFNDYMRPYLLKIVESFTKYQIKNIINMTSKYSIRI 140 Query: 166 YESLCQYRKPDGSGIVSLK--IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMR 223 Y+ L R L+ DW+ ++P++ +R + + L++ EIN T ++ Sbjct: 141 YQILKDLRNITRQKEFELEEFCDWL----EVPKNKRRWGNLQFDILELAKKEINELTDIK 196 Query: 224 L--SYIEKKKGRQTTHIVFSFRDITS 247 + Y E+KKG++ + FS + ITS Sbjct: 197 ILGIYPERKKGKKV--LSFSIKFITS 220 >UniRef50_Q02V81 Replication initiator protein n=74 Tax=root RepID=Q02V81_LACLS Length = 443 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 15/121 (12%) Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLC----QYRKPDGSG----------- 179 ++P+ I L+ FTQ+ LS+ E+ + Y++ LY+ L QY G Sbjct: 139 IMPYLIELKKNFTQYALSDVMELNSKYSIILYKWLSMNYNQYEHYSAKGGRRVNQVESYR 198 Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 S+ + + E Y+ M +F +R L + EIN T ++Y + KKGR IV Sbjct: 199 NPSITVKELREITDTIHEYKDMSNFTKRVLDNSLKEINHHTSFNVTYDKIKKGRSIDSIV 258 Query: 240 F 240 F Sbjct: 259 F 259 >UniRef50_D2U1L9 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2U1L9_9ENTR Length = 212 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 4/136 (2%) Query: 110 ESFPWFIKRA-HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYES 168 E W ++A + G + + Y+IP+ L ++FT+ + ++ + Y++R+YE Sbjct: 61 EEIRWIQRKAKYFTGEGKIEISFSDYIIPYLTQLHDQFTKIVVKNVSKLKSTYSIRVYEL 120 Query: 169 LCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIE 228 L Q++ G +KID L Y R ++ + EIN+++ + +S Sbjct: 121 LMQFK---AIGDRVIKIDDFRSMLGLDDKYSDFKILNRAVIKPSLKEINAKSDINVSIDL 177 Query: 229 KKKGRQTTHIVFSFRD 244 K+GR+ + F F + Sbjct: 178 VKQGRKVVALHFHFEE 193 >UniRef50_C5H432 Initiator RepB protein family n=1 Tax=Arcobacter butzleri RepID=C5H432_9PROT Length = 326 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 25/235 (10%) Query: 18 IVQSNDLTEAA-YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 + + NDL A YSLS D +++ + + IR D T QE+ I V+ +A++ G S Sbjct: 14 VKKHNDLVNKARYSLSEDGIKLVSMLIAMIRTDDETFQEY----HIKVSDFAKLKGSNSK 69 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 + + + +K + G + + I+ L Sbjct: 70 NNYESVHKIIKELLSCPIKI-----------GNLQANFIASGEYKEGTATAVFEISQKLK 118 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ-------YRKPDGSGIVSLKIDWII 189 P+ + L+ F ++ L + + + Y +RLYE + Q Y K S I+ + Sbjct: 119 PYLLELKKDFLEYDLKDILSLKSGYVIRLYEMIVQQWREYKHYNKNAKSFTFDFDIEEMR 178 Query: 190 ERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 +++P SY R D +R + + +T + Y E K GR + + R+ Sbjct: 179 TLFEIPDSY-RYNDV-KRIIDKAQQQFKEKTNITFDYEEYKIGRAVKRLKITVRE 231 >UniRef50_Q1CR19 Replication initiation protein A n=18 Tax=Helicobacter RepID=Q1CR19_HELPH Length = 543 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 18/187 (9%) Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAG----DEKGYESFPWFIKRAHSPSRGL- 126 LT+ + + ++ L + G R + G D Y F F R H P++ + Sbjct: 153 NLTNRQLLQILKNLLDNIGGANFWIIREHVENGEIYEDHTSYMLFKQFEIRIHKPTQTIE 212 Query: 127 -YSVHINP---YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 V +N YL+ +G+ ++T F+L E + + YA LY L QY+ +GI+S Sbjct: 213 YLEVQLNDSYQYLLNN-LGMGGQYTSFKLLEFQRVRGKYAKTLYRLLKQYK---STGILS 268 Query: 183 LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPM-RLSYIEKKKG---RQTTHI 238 ++ E +P+ Y +M + ++ L E+ P LSY +++K R+ THI Sbjct: 269 VEWSQFRELLDIPKDY-KMENIDQKVLTPAFKELRKIYPFEHLSYKKERKSHDKRKVTHI 327 Query: 239 VFSFRDI 245 F F + Sbjct: 328 DFYFEQL 334 >UniRef50_A0R878 Initiator RepB protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R878_PELPD Length = 274 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/232 (18%), Positives = 101/232 (43%), Gaps = 19/232 (8%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 S +V +N L +A SLS +KR+++ ++ + G + +H ++YAE F + Sbjct: 51 SKNVVVANTLVRSAQSLSLAEKRIVFAAAAKMGNNFGEVI-------LHASEYAETFDMP 103 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFP--WFIKRAHSPSRGLYSVHIN 132 +A + ++ A++ + P D +G + W K + + + Sbjct: 104 VKQAYEQLKNAVEGMRTRYFTLAVP-----DREGVMIWKINWLQKIGYDDGKARVGLRFC 158 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 ++P+ L FT+++L + + + ++ RL E Q SG +++KI+ Sbjct: 159 EDVLPYLCDLTKEFTKYKLKQACALRSVHSWRLLELFEQ----QSSGWLAIKIEDFHHAM 214 Query: 193 QLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 + S + +R+ ++ + E+ + + + K GR+ + F+F+ Sbjct: 215 ESNDSCRNNFAQLKRKIIEPAIKELREKDNWLIDFSFTKAGRKVDLLKFTFK 266 >UniRef50_Q97TD7 Replication protein, repA n=1 Tax=Clostridium acetobutylicum RepID=Q97TD7_CLOAB Length = 336 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 14/225 (6%) Query: 24 LTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIR 83 L EA Y+L+ + ++ + ++ I K DG +H + +I + KY +F S +DI+ Sbjct: 13 LIEARYNLTSKENDIIDMILNTI-KDDG---KH--VYKIDIEKYKNLFVSGSTNVYRDIK 66 Query: 84 QALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQ 143 +A K K F ++ AG E F WF ++ G I L + ++ Sbjct: 67 KATKDLFTKHNKFIIKDKTAGKE---FYFTWFSMLNYNDKDGSIYFEIGETLKAALLEMK 123 Query: 144 NRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPD 203 R + L T + Y+ R+Y L + +G ID + + P SY+ Sbjct: 124 KRI-YYELQYTLNFRSIYSKRIYYMLKSFS---DTGWRIDNIDELQYKLNCPPSYKNYAV 179 Query: 204 FRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 F+ + L EIN + + + K G++ T I F +D ++ Sbjct: 180 FKNKVLVQAQKEING-SDISFDFTPIKTGKKVTGIKFLIKDSNTV 223 >UniRef50_Q3T4G0 RepA n=1 Tax=Capnocytophaga ochracea RepID=Q3T4G0_CAPOC Length = 372 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 39/251 (15%) Query: 5 AVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLY--------LFVDQIRKSDGTLQEH 56 AVI +K+ ++QS LT A Y + +KR++Y L + Q K ++ + Sbjct: 2 AVIKNKE------VLQSYILTTAKYDFTIYEKRIMYRQIEIEQELLLGQSIKPGVIIETN 55 Query: 57 ---DGICEIHVAKYAEIFGLTSAEASKD---IRQALKSFAGKEVVFYRPEEDAGDEKGYE 110 D I V + L + E K+ +++A ++ K++++ P+ E Sbjct: 56 LWKDKKYTIPVN-----WLLPNGEKDKNHAQVKKAFEALMSKKIIYETPD-------AIE 103 Query: 111 SFPWFIKRAHSPSRG-LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESL 169 FP I+R +G + + ++ + F ++ L E + YAMR YE L Sbjct: 104 GFP-LIQRFKVDKKGETVTWQVPKEIVDVIVNFAKGFRKYELKTAMEFESVYAMRFYELL 162 Query: 170 CQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK 229 + P ++ I+ + + +++ Y+ DF R ++ E+++++P Y Sbjct: 163 SGQKNP-----LTYTIEQLKDMFKIQDKYKLTADFLRYVIEPAKKELDAKSPYSFEYKIN 217 Query: 230 KKGRQTTHIVF 240 K GR+ I F Sbjct: 218 KSGRKFHSITF 228 >UniRef50_C6ZBN9 Replication protein n=1 Tax=Bacteroides sp. 4_3_47FAA RepID=C6ZBN9_9BACE Length = 340 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 26/249 (10%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQI---RKSDGT-LQEHDG--ICEIHVA 65 + S I QSN T A Y + +K +LY +Q R+++ +EH+G I + HV+ Sbjct: 6 KTQSKDIQQSNYFTTAKYDYTLQEKIILYRVAEQAFEYREANKEWFKEHEGEYIAKDHVS 65 Query: 66 KYAEIFGLTSAE--------ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIK 117 I + E D+ A KS K + F K SF + Sbjct: 66 FRLPITHFMTKEQRADGSGKCYDDVVAAFKSLTSKRIEF--------QTKDAFSFGALLN 117 Query: 118 RA-HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPD 176 A P G+ ++ ++ + FT+ L E+ + Y+MR YE R+ Sbjct: 118 SADREPGEGIIYFTVHKFVWQSALDFTKGFTKLDLVVAMELKSAYSMRFYEIA---RRWS 174 Query: 177 GSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTT 236 + I + ++ + + + Y D +R + E++ P SY + K GR+ Sbjct: 175 DTKIWKISVEDFRDLFGCKEKYPAFNDMKRYIIDNAKEELDRVAPWSFSYEQHKVGRKVE 234 Query: 237 HIVFSFRDI 245 F F +I Sbjct: 235 SFTFYFYEI 243 >UniRef50_C3RRC7 Putative uncharacterized protein n=1 Tax=Mollicutes bacterium D7 RepID=C3RRC7_9MOLU Length = 256 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 99/237 (41%), Gaps = 31/237 (13%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 +I QSN+L A + + Q R+ + Q + G L + E++ E G Sbjct: 6 KIKQSNNLILATHKMDIQQMRLFFYACSQYK---GDLDIKISLEEVNRV-LTENTGNRGG 61 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 + IR+ + + +V DEKG E + ++R+ + + Sbjct: 62 NQRERIRETIPTLMRNAIVHIE------DEKG-EEWCSALRRSRLNKD-------DTVIF 107 Query: 137 PFFIGLQNRFTQFR------LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 F +Q + R LS +T+ Y++RLYE G+ S K D+ I Sbjct: 108 TFDKSIQKELEELRGYTWMYLSNLTGMTSTYSVRLYEFFAMRL---GNANKSSKFDYDIN 164 Query: 191 RYQL----PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 + +L + Y+ DF +R L EIN ++ + +SY + K GR T I+F+F+ Sbjct: 165 KLRLYLDCTKKYKDFRDFNKRVLAQAEKEINEKSNIHMSYKKIKTGRSITSILFTFK 221 >UniRef50_C9KZX8 Initiator RepB protein n=4 Tax=Bacteroides RepID=C9KZX8_9BACE Length = 334 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 27/234 (11%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQ-----------EHDGICEIHVAK- 66 +QS +T A Y S +KR+LY V+ + G LQ EH +H+ Sbjct: 20 IQSYIMTTAKYDFSVYEKRILYRIVEM---AQGELQGVRFATDCKKIEHTLFDTVHITMP 76 Query: 67 YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 A + S E ++QAL S K +F +E + P KR+ + Sbjct: 77 IASLLNGESDENYTRVKQALLSLQKK--IFTYEDEKEWISISIIALPKIKKRS-----SV 129 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID 186 S I+ ++ + F ++ L+ + + Y+MR YE L + + LK Sbjct: 130 VSFQIDSHIWDCCLDFSKGFRKYELATAMKFKSVYSMRFYELLSGQKTKLIYPLEQLK-- 187 Query: 187 WIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 E +++ Y + DF R+ ++ NE++ +P + K+G++ F Sbjct: 188 ---EMFKVQDKYAKTNDFVRKVIEPAKNELDELSPYTFEWSANKEGKKIVSFNF 238 >UniRef50_P22308 Replication initiation protein n=12 Tax=root RepID=REPY_ECOLX Length = 316 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/227 (19%), Positives = 94/227 (41%), Gaps = 16/227 (7%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + ++N+L + Y L+ + +++ V + + + +YA++ ++ Sbjct: 6 VFKANELAISRYDLTEHETKLILCCVALLNPTIENPTRKERTVSFTYNQYAQMMNISREN 65 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPW--FIKRAHSPSRGLYSVHINPYL 135 A + +A + + V P KG+E F W + K + ++S I PYL Sbjct: 66 AYGVLAKATRELMTRTVEIRNPLV-----KGFEIFQWTNYAKFSSEKLELVFSEEILPYL 120 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ--YRKPDGSGIVSLKIDWIIERYQ 193 +F ++ L K N Y+MR+YE L + +K + + +D Sbjct: 121 FQL-----KKFIKYNLEHVKSFENKYSMRIYEWLLKELTQKKTHKANIEISLDEFKFMLM 175 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 L +Y + L+ ++N+ + M+L + K+GR T ++F Sbjct: 176 LENNYHEFKRLNQWVLKPISKDLNTYSNMKL--VVDKRGRPTDTLIF 220 >UniRef50_Q6R586 Replication protein A n=1 Tax=Ornithobacterium rhinotracheale RepID=Q6R586_9FLAO Length = 325 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 33/243 (13%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRK-------SDGTLQEHDGICEIHVAK 66 N+ ++QS +T A Y + ++KR+LY ++ ++K ++ L D + Sbjct: 4 NNKDLIQSYVITTARYDFNVNEKRVLYRIIEHLQKYTTGLKLNEKYLINKDLFGDYLFQM 63 Query: 67 YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA-HSP--- 122 F + +A ++ A K+ F ++D+ W I R SP Sbjct: 64 DLNTFLIDNANHYDRVKDAFLRLNDKKFEF--QDDDS----------WSIIRIIESPEIV 111 Query: 123 -----SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG 177 + ++ + F+ + ++ + E + Y+MR YE ++P Sbjct: 112 GLSTQGNSIVRFRLHKRIFDAFLDFSKGYRKYEIKVAMEFKSEYSMRFYELFSGKKEPII 171 Query: 178 SGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 I LK + +++ YQ+ DF +R + E+ + P Y K GR+ TH Sbjct: 172 YDIEELK-----KMFKIDGKYQKSSDFIKRVIDTAQKELTEKAPYSFKYETIKTGRRFTH 226 Query: 238 IVF 240 I F Sbjct: 227 IKF 229 >UniRef50_A6XA85 Rep n=1 Tax=Bifidobacterium bifidum RepID=A6XA85_9BIFI Length = 289 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 22/225 (9%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAE---IFGLT 74 ++QS +T + Y S +KR+LY V+ ++ + + G+ I Y + + ++ Sbjct: 10 VIQSYLMTVSKYDFSVYEKRILYRLVEAMQCEIEGKKLYPGL-RIEKTLYDDRVVLMPIS 68 Query: 75 SAEASKD------IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 + A+ D +++AL K F D + ++ K + RG Sbjct: 69 AFLANDDDENYTRVKKALLDLRNKSFEF-------DDGQIWKVIGIIEKPQFNYKRGWVR 121 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 I P + + F ++ L E T+ Y+MR YE + +P I LKI Sbjct: 122 FEIQPEVYNAVLNFSKGFRKYELKTAMEFTSQYSMRFYELMSGQERPLIYTIEDLKI--- 178 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 + + Y+R PDF +R + E+++++P Y K+GR Sbjct: 179 --MFGVQDKYKRNPDFIKRIIVPAKEELDAKSPYSFEYKILKEGR 221 >UniRef50_C0QUY9 Putative replication initiation protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUY9_PERMH Length = 516 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 19/122 (15%) Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID----------W 187 F L+N+F + L + + Y++RLYE L QY K G + ID + Sbjct: 144 FLFELRNKFIAYHLKNIMPMRSKYSIRLYELLKQYEKI---GERTFDIDEFREKIGTRVF 200 Query: 188 IIERYQ-----LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIE-KKKGRQTTHIVFS 241 +I++ L Y+ D RRR ++ V E+N T + ++ +E +KGR+ I F Sbjct: 201 VIDKKTKKKKLLSDDYKDFLDLRRRVIEKAVEEVNKYTDIEITDVEYHRKGRRIGFITFY 260 Query: 242 FR 243 F+ Sbjct: 261 FK 262 >UniRef50_D0UIP0 Replication initiator protein n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=D0UIP0_AGGAD Length = 325 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 7/226 (3%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + +SN L + Y L+ + +++ + ++ + + D I +YAE G++ Sbjct: 6 VYKSNGLVVSRYDLTEQETKLISYGIAKLNPTLTNPTKEDRTAIIPYKEYAEFMGISDEL 65 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 + ++ A+ + + + P A K F W K + + + + P Sbjct: 66 SWHNLNNAISNLMSRTIEIVNPNPQAEISKII--FQWVNKAEFNQQNQCVELTFSEEIKP 123 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG--SGIVSLKIDWIIERYQLP 195 + L N F +++L K + N Y+ R YE L + G V L + E L Sbjct: 124 YLFNL-NEFVKYKLVHIKSLNNKYSTRFYEILLKLLGEKGKVKADVELSLAEFKEMLVLD 182 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 +Y F +R L++ VN++N+ + + +S+ KGR +VFS Sbjct: 183 ANYPTYKQFNQRILKMIVNDVNNNSNLNVSFT--TKGRPVDTLVFS 226 >UniRef50_Q2A086 Putative replication protein n=1 Tax=Sodalis phage phiSG1 RepID=Q2A086_9VIRU Length = 329 Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 54/249 (21%), Positives = 102/249 (40%), Gaps = 17/249 (6%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 M+ + H+K IVQ NDL A Y L D R+L L + ++ + ++ G+ Sbjct: 1 MSHRPLALHEKESKQQVIVQHNDLITARYILGIDGLRLLLLLLSKVNQRG----DNPGLI 56 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 +I + ++ E FG+ + + I A+ + + Y +E K W + + Sbjct: 57 KITIREFQEAFGIPNKNVYRCINNAISALWEGSIEIYVQKERM---KALRISRWITDQTY 113 Query: 121 SPSRG---LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR---- 173 G + + +NP L PF + FT + I + + RLY L + Sbjct: 114 IKEDGKHVVIEITLNPKLDPFLFNMATNFTWTNFEFIQNIRSVTSFRLYMYLISCKNHPL 173 Query: 174 -KPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKG 232 K +G VS+ ID + + R D +++ + + +IN+ + + + K+G Sbjct: 174 CKRNGFFEVSILIDDF--KTLFSTNCARFFDLKKKSIDPAIQDINTYSNISVHCKTVKEG 231 Query: 233 RQTTHIVFS 241 R + F Sbjct: 232 RSVVALRFG 240 >UniRef50_Q06362 ORF195 n=1 Tax=Desulfovibrio desulfuricans RepID=Q06362_DESDE Length = 195 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 27/199 (13%) Query: 18 IVQSNDLTEAAYS-LSRDQKRMLYLFVDQIRKSDGTLQEH----DGICEIHVAKYAEIFG 72 + +SN L A +S S + RM+ L +R+ D QE+ +C+ E+ Sbjct: 13 VKKSNALARAKWSPKSVWEPRMVALVASMVRQDDADFQEYRFPVSTLCDEQ-----EL-- 65 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 S + KDI+ A+++ V+ EE K Y ++ F K + G+ + Sbjct: 66 --SGKRYKDIKAAVENVMKAYVMI---EEG----KNYVAYSIFSKCGYE--NGVMVAAFH 114 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY-RKPDGSGIVSLKIDWIIER 191 P L P F+GLQ +FT++ L E + + Y+ R++E L + KP+ + + + + W + Sbjct: 115 PDLKPHFLGLQKQFTRYSLMEFLVLPSTYSQRVFEVLRSWDDKPEVTIHLLIFMKWWV-- 172 Query: 192 YQLPQSYQRMPDFRRRFLQ 210 +L + P F RFL+ Sbjct: 173 -RLLLCGRSTPTFAVRFLR 190 >UniRef50_UPI00004A2E9C replication protein n=1 Tax=Moraxella bovis Epp63 RepID=UPI00004A2E9C Length = 533 Score = 46.6 bits (109), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 50/236 (21%), Positives = 100/236 (42%), Gaps = 13/236 (5%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I+ N L A L+ +++R++ LF+ I + ++ + ++V + +G+ S + Sbjct: 122 IIIQNRLLHAISHLTLNERRLI-LFLSPIVRKQVEKNPNNRVFYVYVQDFVNEYGIKSKK 180 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 ++ + S K F+ ++ +KG W + + + V ++ +I Sbjct: 181 YYGELEKIADSIVEKAFFFWYKTQNGKAKKG---VSWVSECDYIENEAKIKVKLDDTVIE 237 Query: 138 FFIGLQNRFTQFRLSETKE-ITN--PYAMRLYE----SLCQYRKPDGSGIVSLKIDWIIE 190 F KE I N Y + + E S + D G S I+ + E Sbjct: 238 MLTVFDKTTGNFWTQYQKEWIINLGTYGIIMLELVLSSFDNSFEKDKKGKYS--IEHLRE 295 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 ++ ++Y R DF+ ++ + EI+ TP+R+SY K GR + FS+ D + Sbjct: 296 KFDCIETYPRFSDFKLYVIEKSIKEIHKHTPIRISYQVHKFGRSVQGVSFSYIDTS 351 >UniRef50_UPI0001B43BA0 replication protein n=1 Tax=Listeria monocytogenes FSL J1-208 RepID=UPI0001B43BA0 Length = 238 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 22/229 (9%) Query: 18 IVQSNDLTEAA-YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI--FGLT 74 I +S DL + A +SLS + ++ V ++ ++D L + +A+ E+ FG Sbjct: 13 ITKSKDLIQKARHSLSAKELTLVDFMVSKLEETDKDL----FFVDTTIAEINEVCNFGQG 68 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A A +AL + A K F+ ED G +IK + R + PY Sbjct: 69 GA-AHSSTEKALLNLANKG--FWMLLEDGTKTIGRWLEKPYIKAGQT--RLKLDSDMAPY 123 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 L+ G ++RF + K I YA +LYESL Y++ + + V+ +I + + L Sbjct: 124 LLNLVDGKKSRFFFKDIINLKSI---YAKKLYESLRSYQEEEITMSVN-EIKILFNKEDL 179 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 + R+ + R+ N+IN+ T + +SY+ K+GR+T I F + Sbjct: 180 E--WYRVLAYLRK----AKNDINNFTTIEVSYLTVKEGRETVAIQFKIK 222 >UniRef50_Q1PHH9 PCZ1.1 n=3 Tax=Bacillales RepID=Q1PHH9_9BACL Length = 338 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 29/237 (12%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYS--LSRDQKRMLYLFVDQIRKSDGTLQEHDGI 59 ++T +I+H+ NS I +SN+L+ A + L+ +Q ++L + + +G+ Sbjct: 6 SKTQLISHE---NS--IKKSNELSMAKLNQGLTLNQMQLLAFSI--------YCTQQNGV 52 Query: 60 CEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 E H + + FG+T + ++D R+ + + PE+D D W I R Sbjct: 53 TEFHKIDFEKKFGITKYK-TEDARKDSDKVTSVKFSQWNPEKDYFD-------FWNIFRG 104 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYE---SLCQYRKPD 176 + +G+++ +IP + L+ ++ L+ + + ++ LY+ +L Y Sbjct: 105 MNYHKGIFNFTWAEEMIPHILELKEKYITTDLTIASKFKSSFSWTLYDYIKALHGYWHKQ 164 Query: 177 GSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 S +K+ + +E + QS + R+ L + + EIN T + +SY +K+GR Sbjct: 165 ISKDELMKL-FAVENKKAYQSNTSL--LRQYVLDIAIEEINEHTELEVSYNVEKEGR 218 >UniRef50_D2QVZ6 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVZ6_9SPHI Length = 317 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 8/156 (5%) Query: 20 QSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEAS 79 Q+N +T A Y + +KR++YL + ++ K T+Q DGI + + ++F + Sbjct: 9 QTNAITGARYDYTTTEKRLVYLSLIEVMK---TVQ--DGITDDFFNRDLDLFIMEDQMKK 63 Query: 80 KDIRQALKSFAGKEVVFYRPEEDAGDE-KGYESFPWFIKRA-HSPSRGLYSVHINPYLIP 137 D K VV R ++ + DE G + F+ R + ++GL V I+ ++P Sbjct: 64 SDPNDNRFRDYRKAVVSLRKKDFSIDETDGSWTETGFVTRGKYKKNKGL-EVSISRDVLP 122 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR 173 + L RFT + + + ++ R YE CQ+R Sbjct: 123 YLYELTKRFTVLDATVVMTLASKFSQRFYEWCCQWR 158 >UniRef50_UPI000197AD3E hypothetical protein BACCOPRO_01779 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197AD3E Length = 327 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%) Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKP-----DGSG 179 G+ + H+ + + F ++ L + + YAMR YE + P +GS Sbjct: 118 GVATFHVYEPVWRAALDFTKGFKKYELVTAMKFKSVYAMRFYELMSGQTTPLFVPLEGS- 176 Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQT 235 D + ER+ L Y+R+ DFRR+ + V E++ +P E+K+G++ Sbjct: 177 ------DGLRERFNLQGKYERVNDFRRKVIDVAKKELDKFSPYSFVAKEEKEGKKV 226 >UniRef50_B5TTF0 Putative uncharacterized protein rep n=3 Tax=environmental samples RepID=B5TTF0_9BACT Length = 401 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 101/249 (40%), Gaps = 31/249 (12%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE---IHVAKYAEIFG-L 73 +V ND A YS+ + ++++Y + +RK++ LQ I I+V+ +E FG L Sbjct: 26 VVTRNDFPTARYSIDLNLEKLMYCAMIIVRKNE--LQNKTSITHDDFIYVS--SENFGEL 81 Query: 74 TSAEASKDI----------RQALKSFAGKEVVFYRPEEDAGDEKGYE--SFPWFIKRAHS 121 TS A K++ R A + F P D + E P + Sbjct: 82 TSPMARKEVLTATDKREIQRNAETALKRIYTKFDNPTMLVKDGESDEPAKVPMMTYCHYD 141 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQ----FRLSETKEI---TNPYAMRLYESLCQYRK 174 + V +F L + + F E K I + Y++RLY L Y Sbjct: 142 KATKCIKVRFAKEFFEYFYDLVKKVDEKTKSFSSHELKHIILFNSSYSLRLYRILMSYMW 201 Query: 175 PDGSGIVSLK-IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 + L+ + W++E Y+ + +F+ R L V +EIN + + +S+ K G+ Sbjct: 202 RTSEVTIDLEELRWMLE---CEDKYKELANFKSRVLNVAQDEINELSNINVSFENVKNGK 258 Query: 234 QTTHIVFSF 242 + I F F Sbjct: 259 EVVAIKFIF 267 >UniRef50_D1PMT8 Putative replication initiator protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMT8_9FIRM Length = 575 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 25/216 (11%) Query: 29 YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEAS--KDIRQAL 86 Y+L+ Q++++ I+ SD L + E+ + ++ ++ G+ S +++ + Sbjct: 2 YNLTLSQQKLMLHIFAMIKPSDTELPRY----EMSIYEFLKLCGVDPHNGSMYNQVKKNI 57 Query: 87 KSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRF 146 A V + R E G +K F W G ++ ++P+L P I L+ + Sbjct: 58 SDIASTPVQWIRIE---GTQK-ITMFRWIDGSTIDKRTGKITLTLSPFLKPHLIQLKEFY 113 Query: 147 TQFRLSETKEITNPYAMRLYESLCQ-------YRKPDGSGIVSLKIDWIIE--RYQLPQS 197 T ++ + + Y++R+YE LC+ K G +V W I+ R Q+ S Sbjct: 114 TTMDVTYIMLMKSQYSVRIYE-LCKSYQNLYLQNKAKGKPLV-----WDIDNLRKQVDCS 167 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 RR L +EIN T + Y KK + Sbjct: 168 ATNWAHIRRTVLDKAKSEINGHTDILFDYAVYKKAK 203 >UniRef50_O87353 Replication protein Rep n=2 Tax=Staphylococcus RepID=O87353_STAAU Length = 211 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 5/138 (3%) Query: 106 EKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRL 165 E + F F K S + +P L + + FT+F L E + + Y+ + Sbjct: 11 ETKIKKFVLFYKYEIDISEKYLEIATSPDLKYILNSITDNFTKFELKEMTHLKSTYSKNM 70 Query: 166 YESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSR-TPMRL 224 + L QY+ +G + +KI+ ER +P+SY RM + + L + E++ + + + Sbjct: 71 FRLLKQYK---HTGYMKIKIEDFRERLDIPESY-RMSNINQFVLTPIIKELSPIFSNLNI 126 Query: 225 SYIEKKKGRQTTHIVFSF 242 + ++ KKGR+ + F+F Sbjct: 127 NKVKAKKGRKIEWLEFTF 144 >UniRef50_B0V3Y6 Putative replication protein n=2 Tax=Acinetobacter RepID=B0V3Y6_ACIBY Length = 390 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%) Query: 118 RAHSPSRGLYSVHINPYLIPFFIGLQN-RFTQFRLSETKEITNPYAMRLYESLCQ----Y 172 R ++ + ++P+F L N FT ++L + + + +M LY + Y Sbjct: 135 RWEDDAKNALQIRFTSEVLPYFTRLANGNFTTYQLKDLFALDSVTSMSLYSYFIKNEFKY 194 Query: 173 RKPDGSGIVSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 D S V L ++ I + + Y R DFRR L + EIN RT ++L Y KK Sbjct: 195 ANQD-SYEVELSLENIKALIDIGEKKYDRWVDFRRYVLDKIIEEINERTSLQLEYDTIKK 253 Query: 232 GRQTTHIVF 240 GR + F Sbjct: 254 GRPIVGVRF 262 >UniRef50_B6YS87 Replication protein A n=4 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YS87_AZOPC Length = 532 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/241 (21%), Positives = 107/241 (44%), Gaps = 25/241 (10%) Query: 3 ETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 ET V+N + ++ ++QS LT A Y LS +KR+LY V+ + ++ T ++ D I Sbjct: 14 ETIVLN--RTLSNKDVIQSYILTTARYDLSVYEKRILYGIVECFQ-AELTGKKIDKDFSI 70 Query: 63 HVAKYAEI-----FGLTSAEASK----DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFP 113 + ++ F L + I++AL S K+++ +++ +E+F Sbjct: 71 SPEMFGDVLIEMSFSLLLVDGDDKNHYQIKKALYSLLDKKIL-------RDNDREWEAFT 123 Query: 114 WFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR 173 +K + + ++ + + + ++ L + Y+MR YE L + Sbjct: 124 LIVKPKINKYDRIIRFRLHEEVYEALLDFSKGYRKYELKTAMAFNSIYSMRFYELLSGQK 183 Query: 174 KPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSY-IEKKKG 232 KP I LK ++L + Y+ + FR R + E++ ++P +Y +E +K Sbjct: 184 KPLTYSIEDLKA-----MFRLEKKYKDVGVFRSRVIDPAQRELDLKSPYSFTYQLEHEKE 238 Query: 233 R 233 R Sbjct: 239 R 239 >UniRef50_D2QVG7 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVG7_9SPHI Length = 367 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 3/143 (2%) Query: 105 DEKG-YESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAM 163 DE G Y + F + P +G+ + + +IP F+ L + + Q+ + +++ YA Sbjct: 129 DESGKYTNVVVFPMAEYWPKKGVIELTMYHAVIPVFLYLGSGYAQYGYEDALILSSEYAQ 188 Query: 164 RLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMR 223 L+ +L ++R I +++ +I ++ +SY FR R + + + +IN T + Sbjct: 189 LLFTNLARFRNTGIWRIGLVELRQLIGAHE--KSYANYSAFRTRVIDLSLRQINEHTNLI 246 Query: 224 LSYIEKKKGRQTTHIVFSFRDIT 246 ++Y +GR I F + T Sbjct: 247 VTYEPVMQGRAVVGIEFRIQSKT 269 >UniRef50_Q8VQM9 Replication protein n=2 Tax=Prevotella RepID=Q8VQM9_PREIN Length = 326 Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 5/95 (5%) Query: 146 FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFR 205 + ++ L + + Y+MR+YE + ++P LKI R+ + Y+ + F+ Sbjct: 140 YRKYELVTAMQFKSVYSMRMYELMSGQKRPLEFTFEDLKI-----RFGVKDKYKLVGHFK 194 Query: 206 RRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 R L + E++ +P +YIE K GR+ F Sbjct: 195 TRVLDIAKKELDESSPYSFNYIEVKGGRKVIGFKF 229 >UniRef50_Q8GN68 RepB n=6 Tax=Bifidobacterium longum RepID=Q8GN68_BIFLD Length = 297 Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 8/133 (6%) Query: 112 FPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ 171 F F K P +V +N L ++FT+F L+E ++ + YA Y Q Sbjct: 92 FALFTKFVTDPQEATLAVGVNEEFAFLLNDLTSQFTRFELAEFADLKSKYAKEFYRRAKQ 151 Query: 172 YRKPDGSGIVSLKIDWIIERYQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK 230 YR SGI + D +P+S +++ D +R L+ + E P+ IE++ Sbjct: 152 YR---SSGIWKISRDEFCRLLSVPKSTAEQVRDLNKRVLKPIIEECG---PLLGLKIERQ 205 Query: 231 -KGRQTTHIVFSF 242 R+ + VF+F Sbjct: 206 YVKRRLSGFVFTF 218 >UniRef50_B7LJA1 PI protein (Replication initiation protein) n=1 Tax=Escherichia coli UMN026 RepID=B7LJA1_ECOLU Length = 333 Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 16/139 (11%) Query: 119 AHSPSRGL----YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ-YR 173 A+SP+ G ++ I+PY I IG +N+FT L+ ++ Y+ LY+ + + Y Sbjct: 157 AYSPNEGYVVLKFTHTIHPY-ISNLIGGENKFTTQLLTSAMRLSGQYSWALYQLIRKNYS 215 Query: 174 KPDGSGIVSLKID--------WIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRL- 224 K S+ ++ + IE ++ Y P F+R + + EI +T + Sbjct: 216 KFRTKNYFSIHLNELKDELIAYTIEDDEVVYKYPEFPIFKREVINKAIKEIKEKTEIEFL 275 Query: 225 -SYIEKKKGRQTTHIVFSF 242 IE K+GR+ + + F F Sbjct: 276 SCLIESKEGRKVSVLRFEF 294 >UniRef50_Q9LAL2 Putative uncharacterized protein n=1 Tax=Moraxella catarrhalis RepID=Q9LAL2_MORCA Length = 429 Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust. Identities = 57/257 (22%), Positives = 102/257 (39%), Gaps = 30/257 (11%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQI-RKSDGTLQEHDGICEIHVAK-----YA-EI 70 I +SN L E A+ LS + ++ L ++++ + G Q E +A YA E+ Sbjct: 19 IFKSNALVEGAFDLSPAEHDLMTLAINKLFSQGVGGKQVFISAKEFAIANQINENYAYEV 78 Query: 71 FGLTSAE------ASKDIRQALKSFAGKEVVF--YRPEEDAGDEKGYESFP----WFIKR 118 T+ +K + LK G+E + RP+ D YE W Sbjct: 79 LAETAKRLQKRTFKAKIYKDGLKKLVGEEDPYSVARPKGD------YELLDLHANWVQAV 132 Query: 119 AHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ---YRKP 175 A+ G + + L +T++ +T ++ + RLYE C+ + P Sbjct: 133 AYQEKSGFIYLMFSDVLAYLIQKTGEAYTKYPYEKTIDLKRFHTKRLYELCCKRAGSKPP 192 Query: 176 DGSGI--VSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 G V++ +D + + Y + DF+R L + EIN + L++ ++K G+ Sbjct: 193 HGKKYPKVTMVVDEWKDFFGCINKYGAVNDFKRYVLTPVIKEINEQGEFELTFEQEKIGK 252 Query: 234 QTTHIVFSFRDITSMTT 250 TH D + T Sbjct: 253 IITHFTLIINDKRTKTA 269 >UniRef50_A1ZVZ5 Initiator RepB protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZVZ5_9SPHI Length = 317 Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust. Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 20/229 (8%) Query: 29 YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKS 88 + LS + + YL V QIR+ D L+E+ V ++ LT K + Sbjct: 23 FLLSEMEINIFYLLVSQIRQDDDDLKEY-------VINLKDLELLTGRTQKKGTLLKVCE 75 Query: 89 FAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH--INPYLIPFFIGLQNRF 146 K+ + + D K YE + A + + I+P + F+I L+ + Sbjct: 76 KLKKQTIVLKDVVSVTDGKEYEFIVENLIGAIKKPKNKQEIRTTISPDVRQFYINLKKHY 135 Query: 147 TQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWII--------ERYQLPQSY 198 +F+L ++ ++ RLY LC ++ +G ID ++ E Q+ Sbjct: 136 NKFQLKNLLQLKGRHSKRLYMILCAFQ---DTGWYYASIDELLNIFASKVGEDGQIEVKK 192 Query: 199 QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 ++ L EI T +R EKK GR+ F+ + S Sbjct: 193 YTAGSLKKHILGKAKEEIEDVTELRFEIEEKKSGRKVVGYKFNIISVDS 241 >UniRef50_C0EYN5 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EYN5_9FIRM Length = 267 Score = 41.2 bits (95), Expect = 0.037, Method: Compositional matrix adjust. Identities = 50/238 (21%), Positives = 100/238 (42%), Gaps = 37/238 (15%) Query: 13 KNSPRIVQSNDLTEAA--YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 K S R V SN A +S +++LY+ + Q +K+D E+ EI V ++A++ Sbjct: 8 KESVRTVTSNQFITACGLEGISLKARKLLYIAISQSKKTDTEFYEY----EIGVKEFADL 63 Query: 71 FGLTSA----EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 G+ EA + ++ F + E++ + Y+ F G Sbjct: 64 MGIAPTHVYQEADVVTDELMRGFVKIQ------EKNNKSWRKYQLFDM----CQYTENGS 113 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI------ 180 I+ + F + L F+Q L + ++ +PY+M ++ + K G+ Sbjct: 114 IRFEISKQMTDFLLNLTGNFSQPLLYDFLKMRSPYSMAIWHLMQMKMKSKKLGVTATTSF 173 Query: 181 -VSL----KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 +SL K+ I++ +++ +F++R L + EI ++++Y K GR Sbjct: 174 DISLAELRKVTGCIDK------LKQVGEFKKRVLDKALREIFDCAGVKITYQNIKVGR 225 >UniRef50_UPI0001979AA2 putative pNL871104_p1 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001979AA2 Length = 373 Score = 40.8 bits (94), Expect = 0.048, Method: Compositional matrix adjust. Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 33/241 (13%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFV---DQIRKSDGTLQEHDGICEIHVAKYAEIF- 71 P IVQ ND + A +++S + ++L + D + +S+ QE + + AEI Sbjct: 26 PVIVQLNDFSYARFNMSVSEFKILLAMLATLDSVNQSEFIEQE------VTTRELAEILQ 79 Query: 72 ---GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 + + DI Q L E ++ D G+ F +IK+ + Sbjct: 80 HEKNINNESYLYDIMQKLA-----EKTYF---SDNGESAIAVPFFKYIKK--QDDKAFLK 129 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW- 187 N L PFF+ L+ F +F +E K++ + Y++RLY L + + ++ ID+ Sbjct: 130 FKFNDTLKPFFLELRRGFVKFNYTEIKDLRSFYSIRLYIMLLTELRQNRQCLI---IDYK 186 Query: 188 -IIERYQLPQSYQRMPDFRRRFLQVCVN-----EINSRTPMRLSYIEKKKGRQTTHIVFS 241 + + LP+ DF ++ N +N+ L +K G++ ++F+ Sbjct: 187 TLCDTLGLPRHRAERKDFGVFNQKILTNFRKDMLLNAFNVELLDIQTEKVGKKVDELIFT 246 Query: 242 F 242 F Sbjct: 247 F 247 >UniRef50_B9ECE7 Plasmid replication initiation protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9ECE7_MACCJ Length = 301 Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 S G+ ++ INP L L+ ++TQ+ L E ++ + Y+ ++ L Q+R +G + Sbjct: 115 STGIVAIKINPELRHILNDLE-QWTQYSLEEFIKLKSTYSKTIFRLLKQFR---TTGYLK 170 Query: 183 LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINS 218 L ++ E+ +P SY RM ++ + V E+N+ Sbjct: 171 LSVEEFREQLDIPNSY-RMSHINQKVISVAEKELNA 205 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P62538 Replication initiation protein n=30 Tax=root Rep... 298 1e-79 UniRef50_Q46146 RepA n=3 Tax=root RepID=Q46146_9GAMM 252 9e-66 UniRef50_Q2LA81 Replication initiator-like protein n=1 Tax=Larib... 251 1e-65 UniRef50_A3MAB7 DNA replication protein n=29 Tax=cellular organi... 243 3e-63 UniRef50_C8Q373 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b... 243 5e-63 UniRef50_P95424 Replication initiator protein n=3 Tax=Pseudomona... 239 7e-62 UniRef50_D0WD49 Initiator RepB protein n=3 Tax=Neisseria RepID=D... 233 3e-60 UniRef50_D0SRM6 Replicase n=2 Tax=Acinetobacter RepID=D0SRM6_ACIJU 232 9e-60 UniRef50_Q6XUP4 RepA n=4 Tax=Pseudomonas RepID=Q6XUP4_9PSED 232 1e-59 UniRef50_C5SD11 Initiator RepB protein n=2 Tax=Allochromatium vi... 232 1e-59 UniRef50_C8PWL8 DNA replication protein n=1 Tax=Enhydrobacter ae... 231 2e-59 UniRef50_C6RK77 DNA replication protein n=2 Tax=Acinetobacter ra... 226 5e-58 UniRef50_C5SDE1 Initiator RepB protein n=1 Tax=Allochromatium vi... 223 4e-57 UniRef50_C9S245 Initiator RepB protein n=7 Tax=Geobacillus RepID... 223 5e-57 UniRef50_C8PV39 DNA replication protein n=1 Tax=Enhydrobacter ae... 220 4e-56 UniRef50_C6RSQ0 Replicase n=4 Tax=Acinetobacter RepID=C6RSQ0_ACIRA 218 1e-55 UniRef50_B2UKE3 Initiator RepB protein n=2 Tax=Ralstonia pickett... 218 1e-55 UniRef50_UPI00004A2E95 putative replication initiator protein n=... 218 1e-55 UniRef50_C0VLN3 Replication protein n=6 Tax=Acinetobacter RepID=... 218 1e-55 UniRef50_Q6J2B8 Replication protein n=2 Tax=Gammaproteobacteria ... 215 8e-55 UniRef50_B0VVG2 Replication protein n=4 Tax=Acinetobacter RepID=... 212 7e-54 UniRef50_Q6TV38 Putative replication initiator protein n=1 Tax=B... 212 1e-53 UniRef50_Q0QVX3 PNL18.2_p1 n=2 Tax=Neisseria lactamica RepID=Q0Q... 211 2e-53 UniRef50_A0R878 Initiator RepB protein n=1 Tax=Pelobacter propio... 210 3e-53 UniRef50_Q1Q7S1 Initiator RepB protein n=3 Tax=Bacteria RepID=Q1... 209 7e-53 UniRef50_A7M7E8 RepA n=5 Tax=Enterobacteriaceae RepID=A7M7E8_9ENTR 208 1e-52 UniRef50_C6QRE9 Initiator RepB protein n=1 Tax=Geobacillus sp. Y... 207 3e-52 UniRef50_C5S4L5 Replication protein n=3 Tax=Pasteurellaceae RepI... 203 3e-51 UniRef50_D0V0D3 RepA n=1 Tax=Moraxella bovis RepID=D0V0D3_MORBO 203 4e-51 UniRef50_B0VVF3 DNA replication protein n=7 Tax=Acinetobacter Re... 203 5e-51 UniRef50_Q0QVZ7 Putative replication initiator protein n=2 Tax=N... 202 1e-50 UniRef50_P17492 Replication protein n=8 Tax=Proteobacteria RepID... 202 1e-50 UniRef50_Q2RYM1 Initiator replication protein RepB n=1 Tax=Salin... 202 1e-50 UniRef50_A0S0J1 Rep n=2 Tax=Acinetobacter RepID=A0S0J1_9GAMM 202 1e-50 UniRef50_C8PXW7 DNA replication protein n=1 Tax=Enhydrobacter ae... 200 4e-50 UniRef50_B3AF43 Plasmid replication protein n=4 Tax=Enterobacter... 199 9e-50 UniRef50_A0A1K9 Replication protein n=7 Tax=Enterobacteriaceae R... 199 9e-50 UniRef50_D0SHJ5 DNA replication protein n=1 Tax=Acinetobacter jo... 198 1e-49 UniRef50_UPI0001C42EDF initiator RepB protein n=1 Tax=Bacillus p... 198 2e-49 UniRef50_D0T0I0 DNA replication protein n=4 Tax=Acinetobacter Re... 198 2e-49 UniRef50_A7FCM5 Plasmid replication protein n=1 Tax=Yersinia pse... 197 3e-49 UniRef50_D2TVA4 Plasmid replication protein n=2 Tax=Enterobacter... 196 7e-49 UniRef50_C4GNB8 Putative uncharacterized protein n=1 Tax=Kingell... 195 1e-48 UniRef50_A9VVF2 Initiator RepB protein n=14 Tax=Bacillus cereus ... 194 2e-48 UniRef50_Q6LPZ0 Hypothetical replication initiation protein n=1 ... 193 4e-48 UniRef50_B0VVD6 Putative replication protein n=1 Tax=Acinetobact... 193 4e-48 UniRef50_A8UX05 Replication initiator protein n=1 Tax=Hydrogeniv... 191 2e-47 UniRef50_Q2B8G7 Replication initiator protein n=1 Tax=Bacillus s... 190 3e-47 UniRef50_Q0HPE2 Initiator RepB protein n=2 Tax=Gammaproteobacter... 190 3e-47 UniRef50_Q629K5 Replication protein n=2 Tax=Haemophilus somnus 1... 190 3e-47 UniRef50_A6DT85 Replication initiator protein n=1 Tax=Lentisphae... 189 8e-47 UniRef50_UPI0001AF0368 DNA replication protein n=1 Tax=Acinetoba... 189 9e-47 UniRef50_B5EWH3 Plasmid replication protein n=2 Tax=Enterobacter... 188 1e-46 UniRef50_B1FHX4 Initiator RepB protein n=2 Tax=Burkholderia ambi... 187 4e-46 UniRef50_Q52204 Putative plasmid replication protein n=2 Tax=pla... 184 3e-45 UniRef50_Q3IEM2 Putative RepA n=1 Tax=Pseudoalteromonas haloplan... 182 7e-45 UniRef50_A1U7R0 Initiator RepB protein n=1 Tax=Marinobacter aqua... 180 3e-44 UniRef50_Q2A086 Putative replication protein n=1 Tax=Sodalis pha... 180 5e-44 UniRef50_Q0SW56 Initiator RepB protein family n=4 Tax=Clostridiu... 178 2e-43 UniRef50_A7GJQ6 RepB family protein n=1 Tax=Clostridium botulinu... 176 6e-43 UniRef50_D2QW11 Initiator RepB protein n=2 Tax=Spirosoma lingual... 175 1e-42 UniRef50_Q1PHH6 PCZ2.1 n=1 Tax=Planococcus sp. ZOYM RepID=Q1PHH6... 174 3e-42 UniRef50_D0U573 Replication initiation protein RepB-like protein... 173 6e-42 UniRef50_C8PV51 Replication protein n=1 Tax=Enhydrobacter aerosa... 171 2e-41 UniRef50_B5Z4W0 Plasmid replication protein n=1 Tax=Escherichia ... 168 2e-40 UniRef50_Q3HYC5 Rep n=1 Tax=Actinobacillus pleuropneumoniae RepI... 166 8e-40 UniRef50_D2QW27 Initiator RepB protein n=1 Tax=Spirosoma lingual... 166 9e-40 UniRef50_UPI00004A2E9C replication protein n=1 Tax=Moraxella bov... 165 1e-39 UniRef50_A8V5F5 Replication initiator protein (Fragment) n=2 Tax... 165 2e-39 UniRef50_B9VWK0 Putative replication protein n=1 Tax=Pseudomonas... 163 6e-39 UniRef50_C9MTU8 Initiator RepB protein n=2 Tax=Bacteroidales Rep... 163 6e-39 UniRef50_C8Q107 Replication protein n=2 Tax=Enhydrobacter aerosa... 163 7e-39 UniRef50_D2U1L9 Phage transcriptional regulator n=1 Tax=Arsenoph... 162 1e-38 UniRef50_Q8ETT4 Replication protein n=1 Tax=Oceanobacillus iheye... 161 2e-38 UniRef50_B1BR22 Initiator RepB protein family n=1 Tax=Clostridiu... 161 2e-38 UniRef50_C5H432 Initiator RepB protein family n=1 Tax=Arcobacter... 161 2e-38 UniRef50_Q3ZR50 Putative uncharacterized protein n=1 Tax=Lactoba... 160 5e-38 UniRef50_Q46088 Replicase n=2 Tax=Bacteria RepID=Q46088_CAMHY 160 5e-38 UniRef50_Q97TD7 Replication protein, repA n=1 Tax=Clostridium ac... 160 6e-38 UniRef50_P18351 Uncharacterized 27.6 kDa protein n=19 Tax=root R... 159 8e-38 UniRef50_P22308 Replication initiation protein n=12 Tax=root Rep... 158 2e-37 UniRef50_Q45152 RepA protein n=3 Tax=Bacteroides RepID=Q45152_BACFR 156 7e-37 UniRef50_Q9X3R7 Replicase n=2 Tax=Riemerella anatipestifer RepID... 155 1e-36 UniRef50_C9KZX8 Initiator RepB protein n=4 Tax=Bacteroides RepID... 155 2e-36 UniRef50_C6ZBN9 Replication protein n=1 Tax=Bacteroides sp. 4_3_... 155 2e-36 UniRef50_Q83Z35 RepB n=4 Tax=Helicobacter pylori RepID=Q83Z35_HELPY 154 3e-36 UniRef50_A6XA85 Rep n=1 Tax=Bifidobacterium bifidum RepID=A6XA85... 153 4e-36 UniRef50_O68836 RepA n=3 Tax=Francisella RepID=O68836_FRATU 153 5e-36 UniRef50_A6TSD9 Initiator RepB protein n=1 Tax=Alkaliphilus meta... 153 7e-36 UniRef50_Q3T4G0 RepA n=1 Tax=Capnocytophaga ochracea RepID=Q3T4G... 150 5e-35 UniRef50_B0V3W3 Putative replication protein n=2 Tax=Acinetobact... 148 1e-34 UniRef50_Q02V81 Replication initiator protein n=74 Tax=root RepI... 148 2e-34 UniRef50_B6D407 RepA n=1 Tax=Capnocytophaga canimorsus RepID=B6D... 148 2e-34 UniRef50_Q6R586 Replication protein A n=1 Tax=Ornithobacterium r... 147 3e-34 UniRef50_Q83XW3 RepA n=1 Tax=Flavobacterium psychrophilum RepID=... 146 8e-34 UniRef50_Q93NB4 RepB n=11 Tax=Lactobacillales RepID=Q93NB4_9LACT 145 9e-34 UniRef50_D0UIP0 Replication initiator protein n=1 Tax=Aggregatib... 145 1e-33 UniRef50_Q19N19 Replication initiation protein n=2 Tax=Campyloba... 143 5e-33 UniRef50_C3RRC7 Putative uncharacterized protein n=1 Tax=Mollicu... 143 5e-33 UniRef50_B5A7F5 RepA n=2 Tax=Bacteroides RepID=B5A7F5_BACUN 143 5e-33 UniRef50_A7ZGH9 Putative pNL871104_p1 n=1 Tax=Campylobacter conc... 142 1e-32 UniRef50_Q4HN85 Initiator RepB protein family n=1 Tax=Campylobac... 142 1e-32 UniRef50_C4B6A3 Putative replication protein n=3 Tax=Clostridium... 134 2e-30 UniRef50_C0QUY9 Putative replication initiation protein n=1 Tax=... 133 4e-30 UniRef50_D2QUY6 Initiator RepB protein n=1 Tax=Spirosoma lingual... 130 3e-29 UniRef50_Q06362 ORF195 n=1 Tax=Desulfovibrio desulfuricans RepID... 127 4e-28 UniRef50_Q1PHH9 PCZ1.1 n=3 Tax=Bacillales RepID=Q1PHH9_9BACL 121 2e-26 UniRef50_D1PH89 Initiator RepB protein n=1 Tax=Prevotella copri ... 121 3e-26 UniRef50_C7UIY7 Initiator Replication protein n=9 Tax=Lactobacil... 119 1e-25 UniRef50_UPI0001B43BA0 replication protein n=1 Tax=Listeria mono... 118 1e-25 UniRef50_C6S581 Putative initiator RepB protein n=1 Tax=Neisseri... 113 8e-24 UniRef50_C9A1Q4 Replication protein n=8 Tax=Lactobacillales RepI... 112 1e-23 UniRef50_Q4L2Y4 Replication protein Rep n=48 Tax=Staphylococcus ... 103 8e-21 UniRef50_C5K6V2 Putative uncharacterized protein n=1 Tax=Perkins... 99 6e-20 UniRef50_Q1CR19 Replication initiation protein A n=18 Tax=Helico... 96 1e-18 UniRef50_UPI0001BCE2A8 replication protein B n=1 Tax=Campylobact... 89 1e-16 Sequences not found previously or not previously below threshold: UniRef50_Q2A6M6 Replication protein B n=3 Tax=Pasteurellaceae Re... 170 6e-41 UniRef50_Q8VQM9 Replication protein n=2 Tax=Prevotella RepID=Q8V... 156 7e-37 UniRef50_B6YS87 Replication protein A n=4 Tax=Candidatus Azobact... 142 8e-33 UniRef50_D1PMT8 Putative replication initiator protein n=1 Tax=S... 138 2e-31 UniRef50_UPI000197AD3E hypothetical protein BACCOPRO_01779 n=1 T... 133 8e-30 UniRef50_B5TTF0 Putative uncharacterized protein rep n=3 Tax=env... 131 2e-29 UniRef50_Q9LAL2 Putative uncharacterized protein n=1 Tax=Moraxel... 130 5e-29 UniRef50_C0EYN5 Putative uncharacterized protein n=1 Tax=Eubacte... 129 9e-29 UniRef50_D0SGM0 Putative uncharacterized protein n=1 Tax=Acineto... 121 1e-26 UniRef50_D2QW12 Initiator RepB protein n=1 Tax=Spirosoma lingual... 120 4e-26 UniRef50_D0SHA2 Replication protein n=1 Tax=Acinetobacter johnso... 120 5e-26 UniRef50_A8EVY6 Replication protein n=1 Tax=Arcobacter butzleri ... 119 6e-26 UniRef50_B0V3Y6 Putative replication protein n=2 Tax=Acinetobact... 119 8e-26 UniRef50_O69393 Replication protein n=1 Tax=Ruminococcus albus R... 117 4e-25 UniRef50_B6YSC3 Replication protein A n=1 Tax=Candidatus Azobact... 114 3e-24 UniRef50_C0BF49 Putative uncharacterized protein n=1 Tax=Coproco... 112 1e-23 UniRef50_B7LJA1 PI protein (Replication initiation protein) n=1 ... 110 5e-23 UniRef50_D2QVZ6 Initiator RepB protein n=1 Tax=Spirosoma lingual... 109 1e-22 UniRef50_D2QVG7 Initiator RepB protein n=1 Tax=Spirosoma lingual... 109 1e-22 UniRef50_B6YSE0 Replication protein A n=1 Tax=Candidatus Azobact... 109 1e-22 UniRef50_A1ZVZ5 Initiator RepB protein n=1 Tax=Microscilla marin... 108 2e-22 UniRef50_C3S7V4 Rep n=1 Tax=Streptococcus parasanguinis RepID=C3... 104 2e-21 UniRef50_A0R7R9 Initiator RepB protein n=1 Tax=Pelobacter propio... 104 2e-21 UniRef50_Q6AI77 Related to replication protein RepA n=1 Tax=Desu... 103 5e-21 UniRef50_B5KF63 Initiator RepB protein n=1 Tax=Octadecabacter an... 103 6e-21 UniRef50_B1BQZ4 Initiator RepB protein n=1 Tax=Clostridium perfr... 101 2e-20 UniRef50_UPI00016C5BA2 putative replication protein n=1 Tax=Clos... 99 1e-19 UniRef50_A0R7S0 Initiator RepB protein n=1 Tax=Pelobacter propio... 99 1e-19 UniRef50_A9M4V2 Replication initiation protein RepB n=1 Tax=Vibr... 98 2e-19 UniRef50_B4RHW9 Replication initiator protein n=2 Tax=Alphaprote... 98 3e-19 UniRef50_C2F289 Replication initiator protein n=6 Tax=Lactobacil... 98 4e-19 UniRef50_C3Q8A6 RepA n=20 Tax=Bacteroides RepID=C3Q8A6_9BACE 97 5e-19 UniRef50_B6J9Q7 Plasmid replication initiation protein n=12 Tax=... 96 1e-18 UniRef50_O87353 Replication protein Rep n=2 Tax=Staphylococcus R... 96 1e-18 UniRef50_C5B575 Putative uncharacterized protein n=1 Tax=Methylo... 95 2e-18 UniRef50_A4JWE3 Initiator RepB protein n=1 Tax=Burkholderia viet... 95 2e-18 UniRef50_Q1ENI4 RepB n=2 Tax=Lactobacillus RepID=Q1ENI4_LACPL 95 2e-18 UniRef50_B6YSB4 Replication protein A n=2 Tax=Candidatus Azobact... 94 3e-18 UniRef50_C8KXR0 Replication protein n=1 Tax=Actinobacillus minor... 93 1e-17 UniRef50_UPI0001979AA2 putative pNL871104_p1 n=1 Tax=Helicobacte... 92 1e-17 UniRef50_A9M546 Replication initiation protein n=19 Tax=Vibrio R... 92 1e-17 UniRef50_C6BQ44 Initiator RepB protein n=1 Tax=Ralstonia pickett... 92 2e-17 UniRef50_C9NQ31 Replication protein n=3 Tax=Vibrio RepID=C9NQ31_... 92 2e-17 UniRef50_B2JUN4 Initiator RepB protein n=1 Tax=Burkholderia phym... 92 2e-17 UniRef50_Q8GN68 RepB n=6 Tax=Bifidobacterium longum RepID=Q8GN68... 91 3e-17 UniRef50_A1BC50 Initiator RepB protein n=1 Tax=Paracoccus denitr... 91 4e-17 UniRef50_Q68BL4 Replication protein n=2 Tax=Lactobacillus RepID=... 91 5e-17 UniRef50_B0ZE01 PI protein n=10 Tax=Gammaproteobacteria RepID=B0... 90 5e-17 UniRef50_C9KLS3 Initiator RepB protein n=1 Tax=Mitsuokella multa... 90 6e-17 UniRef50_A5VGG8 Initiator RepB protein n=1 Tax=Sphingomonas witt... 90 6e-17 UniRef50_D2MK96 Plasmid replication initiation protein n=6 Tax=C... 89 1e-16 UniRef50_UPI0001BCE2AC putative RepE n=1 Tax=Campylobacter fetus... 89 2e-16 UniRef50_B2TSF7 Replication initation protein Pi n=2 Tax=Enterob... 88 2e-16 UniRef50_B0S461 Replication protein n=1 Tax=Finegoldia magna ATC... 88 3e-16 UniRef50_Q52180 RepA n=1 Tax=Lactobacillus acidophilus RepID=Q52... 88 3e-16 UniRef50_C6BQP5 Replication protein n=3 Tax=Ralstonia RepID=C6BQ... 88 3e-16 UniRef50_C7C2U9 Plasmid replication protein n=1 Tax=Staphylococc... 87 5e-16 UniRef50_P03067 PI protein n=4 Tax=root RepID=PIR_ECOLX 87 5e-16 UniRef50_D0DD73 Initiator RepB protein n=2 Tax=Rhodobacteraceae ... 87 5e-16 UniRef50_D0I2S1 Replication protein n=1 Tax=Grimontia hollisae C... 86 9e-16 UniRef50_A3PQH1 Plasmid replication initiation protein n=18 Tax=... 86 1e-15 UniRef50_A2SMS3 Putative uncharacterized protein n=1 Tax=Methyli... 85 2e-15 UniRef50_Q9EZ86 Replication protein B n=7 Tax=Campylobacter RepI... 85 2e-15 UniRef50_C9N206 Putative replication protein rep n=1 Tax=Leptotr... 85 2e-15 UniRef50_Q93PC9 MS100, putative replicase RepA n=1 Tax=Microscil... 85 3e-15 UniRef50_Q2T2N9 Plasmid replication protein, putative n=76 Tax=B... 84 4e-15 UniRef50_C4QRD6 Replication protein , putative (Fragment) n=1 Ta... 84 5e-15 UniRef50_D0QMK6 Pi protein n=1 Tax=Escherichia coli RepID=D0QMK6... 83 6e-15 UniRef50_B1F975 Plasmid replication initiation protein n=1 Tax=B... 83 6e-15 UniRef50_B9ECE7 Plasmid replication initiation protein n=1 Tax=M... 83 8e-15 UniRef50_Q8GN33 Probable replication protein rep n=12 Tax=Bacter... 83 1e-14 UniRef50_B3E5E7 Initiator RepB protein n=1 Tax=Geobacter lovleyi... 83 1e-14 UniRef50_C8WG51 Initiator RepB protein n=1 Tax=Zymomonas mobilis... 82 1e-14 UniRef50_Q5CZF6 Putative replication protein n=8 Tax=Bacteroides... 82 2e-14 UniRef50_D2U4L0 Pi protein (Replication initiation protein) n=1 ... 82 2e-14 UniRef50_O85801 Replication protein A n=8 Tax=Helicobacter pylor... 81 3e-14 UniRef50_A2A225 Putative DNA Initiator replication protein RepB ... 81 3e-14 UniRef50_UPI00017427F0 replication initiator protein n=1 Tax=can... 81 3e-14 UniRef50_A4U0D9 Putative uncharacterized protein n=1 Tax=Magneto... 80 9e-14 UniRef50_B5ZM92 Initiator RepB protein n=1 Tax=Gluconacetobacter... 80 9e-14 UniRef50_Q9RHE5 RepA n=1 Tax=Erysipelothrix rhusiopathiae RepID=... 79 2e-13 UniRef50_Q5I3A2 Replication protein (Fragment) n=1 Tax=Vibrio ch... 79 2e-13 UniRef50_C9L0X5 Initiator RepB protein n=4 Tax=Bacteroides RepID... 79 2e-13 UniRef50_Q9ZN83 Replication protein n=2 Tax=Lactobacillales RepI... 78 2e-13 UniRef50_C6XEL6 Initiator RepB protein n=1 Tax=Methylovorus sp. ... 78 2e-13 UniRef50_A1VWT1 Initiator RepB protein n=1 Tax=Polaromonas napht... 78 2e-13 UniRef50_D1XV24 Initiator RepB protein n=1 Tax=Prevotella bivia ... 78 4e-13 UniRef50_UPI0001BCA79F replication-like protein n=1 Tax=Fusobact... 77 5e-13 UniRef50_C3XLI9 Replication protein n=1 Tax=Helicobacter wingham... 76 9e-13 UniRef50_A7HZC8 Putative RepE n=2 Tax=Campylobacter RepID=A7HZC8... 76 1e-12 UniRef50_D0I2R4 Replication protein n=1 Tax=Grimontia hollisae C... 76 1e-12 UniRef50_D1XZR3 Initiator RepB protein n=2 Tax=Prevotella RepID=... 76 1e-12 UniRef50_C5VLR9 Initiator RepB protein n=3 Tax=Prevotella RepID=... 76 1e-12 UniRef50_Q03N27 Plasmid replication initiation protein n=22 Tax=... 76 1e-12 UniRef50_A4JUI4 Putative uncharacterized protein n=1 Tax=Burkhol... 75 2e-12 UniRef50_P72243 ORF1 n=1 Tax=Prevotella ruminicola RepID=P72243_... 75 3e-12 UniRef50_Q58AT2 Replication protein n=2 Tax=Cupriavidus metallid... 75 3e-12 UniRef50_C5NND2 RepB initiator protein n=1 Tax=Photobacterium da... 75 3e-12 UniRef50_D0Z5I8 Putative uncharacterized protein n=1 Tax=Photoba... 73 8e-12 UniRef50_B9B6L3 Initiator RepB protein n=17 Tax=Burkholderia Rep... 73 9e-12 UniRef50_UPI0001742AD8 putative RepE n=1 Tax=candidate division ... 73 1e-11 UniRef50_D1ARP8 Initiator RepB protein n=2 Tax=Fusobacteriaceae ... 72 2e-11 UniRef50_Q02VJ2 Replication initiator protein n=1 Tax=Lactococcu... 71 4e-11 UniRef50_C9CGX5 Plasmid replication protein n=5 Tax=Enterococcus... 71 4e-11 UniRef50_A8UD54 Replication protein n=1 Tax=Carnobacterium sp. A... 71 5e-11 UniRef50_C5SZF3 Initiator RepB protein n=1 Tax=Acidovorax delafi... 71 5e-11 UniRef50_Q7WWW9 Putative replication protein n=1 Tax=Ralstonia e... 70 5e-11 UniRef50_Q3BZT2 Putative replication protein n=1 Tax=Xanthomonas... 70 6e-11 UniRef50_B9ECF4 Plasmid replication initiation protein n=1 Tax=M... 70 6e-11 UniRef50_C3X132 Putative uncharacterized protein n=1 Tax=Fusobac... 70 8e-11 UniRef50_A6DEU9 Putative uncharacterized protein n=1 Tax=Caminib... 70 8e-11 UniRef50_A0L312 Initiator RepB protein n=1 Tax=Shewanella sp. AN... 69 1e-10 UniRef50_Q8GI69 Replication protein n=4 Tax=Alphaproteobacteria ... 69 1e-10 UniRef50_B9D168 Putative RepE replication protein n=1 Tax=Campyl... 69 1e-10 UniRef50_D0R6F1 Replication initiation protein n=1 Tax=Lactobaci... 69 2e-10 UniRef50_B9ZQ30 Putative uncharacterized protein n=1 Tax=Thioalk... 68 2e-10 UniRef50_Q46019 RepB protein n=1 Tax=Campylobacter coli RepID=Q4... 68 3e-10 UniRef50_C4IXH5 Putative replication protein n=1 Tax=Clostridium... 68 4e-10 UniRef50_Q46503 ORF135 n=1 Tax=Desulfovibrio desulfuricans RepID... 67 7e-10 UniRef50_A9KCY2 Putative uncharacterized protein n=1 Tax=Coxiell... 66 7e-10 UniRef50_A1VV49 Initiator RepB protein n=1 Tax=Polaromonas napht... 66 8e-10 UniRef50_D1AFD6 Putative uncharacterized protein n=1 Tax=Sebalde... 65 2e-09 UniRef50_Q11ZC6 Initiator RepB protein n=1 Tax=Polaromonas sp. J... 64 3e-09 UniRef50_Q21QA3 Putative uncharacterized protein n=2 Tax=Comamon... 64 4e-09 UniRef50_C3EDF6 Initiator RepB protein n=1 Tax=Bacillus thuringi... 64 5e-09 UniRef50_UPI0001660050 hypothetical protein pPS41_00035 n=1 Tax=... 64 6e-09 UniRef50_D1AQA4 Putative uncharacterized protein n=1 Tax=Sebalde... 64 6e-09 UniRef50_D0GP72 Initiator RepB protein n=2 Tax=Leptotrichia good... 62 1e-08 UniRef50_A1X019 RepE replication protein, putative n=1 Tax=Campy... 62 2e-08 UniRef50_D1ANW6 Initiator RepB protein n=1 Tax=Sebaldella termit... 61 3e-08 UniRef50_Q4A151 Putative replication protein RepA n=1 Tax=Staphy... 61 4e-08 UniRef50_B1Z6C2 Putative uncharacterized protein n=3 Tax=Burkhol... 60 7e-08 UniRef50_C5D170 Putative replication protein n=1 Tax=Variovorax ... 60 8e-08 UniRef50_C5EXK6 RepA n=1 Tax=Helicobacter pullorum MIT 98-5489 R... 59 1e-07 >UniRef50_P62538 Replication initiation protein n=30 Tax=root RepID=REPE2_ECOLX Length = 251 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 236/249 (94%), Positives = 243/249 (97%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 MAE AVINHKKRKNSPRIVQSN+LTEAAYSLSRDQKR+LYLFV QIRKSDG+LQEHDGIC Sbjct: 1 MAEIAVINHKKRKNSPRIVQSNELTEAAYSLSRDQKRLLYLFVHQIRKSDGSLQEHDGIC 60 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 EIHVAKYAE FGLTSAEASKDIRQALK FAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH Sbjct: 61 EIHVAKYAETFGLTSAEASKDIRQALKGFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG+ Sbjct: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGV 180 Query: 181 VSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 VSLKIDWI+ERYQLPQSYQRMPDFRRRFL+ V+EINSRTPMRLSYIEKKKGRQTTHIVF Sbjct: 181 VSLKIDWIMERYQLPQSYQRMPDFRRRFLKASVDEINSRTPMRLSYIEKKKGRQTTHIVF 240 Query: 241 SFRDITSMT 249 SFRDITSMT Sbjct: 241 SFRDITSMT 249 >UniRef50_Q46146 RepA n=3 Tax=root RepID=Q46146_9GAMM Length = 289 Score = 252 bits (644), Expect = 9e-66, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 116/237 (48%), Gaps = 5/237 (2%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N P++ +SN L EA+Y L+ ++R++ + Q+R+ E + + VA YA + G Sbjct: 2 NEPQVYKSNALVEASYRLTPAEQRIMLGCITQVRRDQPLTDE--VMYSVSVADYAALVGT 59 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 S K++ A +EV G W A+ S G + Sbjct: 60 DSHSTYKELADAALRLKRREVWLREYPNGQGKRPKTLVTSWVQSIAYVESEGRVELRFTK 119 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++P+ L +FT++ L + ++T+ +AMRLYE LCQ+R G+G + + W+ E +Q Sbjct: 120 DMLPYLTQLTEQFTRYALEDVAKMTSGHAMRLYELLCQWR---GAGEREVPVAWLREAFQ 176 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 L Y + D +R ++ +IN +P+ + + ++K G + +H+VF+F + T Sbjct: 177 LDGKYPAIKDLKRWVIEPATAQINEHSPLWVKWDQRKTGDRVSHLVFTFGEKAQKGT 233 >UniRef50_Q2LA81 Replication initiator-like protein n=1 Tax=Laribacter hongkongensis RepID=Q2LA81_9NEIS Length = 255 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 7/243 (2%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 + H+ +I S+ LT AA L+ +KR++ V ++ G + Sbjct: 8 KQQVRPAHELPTGKLQITMSHALTTAAQGLTLAEKRVMMYAVAKLDSFKADGGTPSGAVK 67 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 + YAE FG+ A +RQA K + + F+ P + +E W +S Sbjct: 68 LVAHDYAEQFGVDPDTAYTQLRQAGKGIFNRYIRFFEPGKKGPEE---VMVRWVSSARYS 124 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 P G ++ P + P + L+N+FT+++L++ + + Y+ RL E L QY+ +G Sbjct: 125 PGTGTVTLRFTPEIAPHLLQLKNQFTKYKLAQASALRSIYSWRLLELLSQYQ---STGWR 181 Query: 182 SLKIDWIIERYQLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 +++D + P Y+ D RR ++ V E+ + + + K GR+ T + F Sbjct: 182 QIELDEFHHAMETPAGYKANFKDCRRWVIEPAVKELREKDGWLIDWTPIKSGRKVTALHF 241 Query: 241 SFR 243 F+ Sbjct: 242 EFK 244 >UniRef50_A3MAB7 DNA replication protein n=29 Tax=cellular organisms RepID=A3MAB7_ACIBT Length = 316 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 113/236 (47%), Gaps = 6/236 (2%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 +V+ N L A+Y+L ++R++ L + + R+S + +D + E+H Y FG+ Sbjct: 4 LVVKDNALINASYNLDLVEQRLILLAIVEARESGKGINANDPL-EVHADSYINQFGVHRN 62 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 A + ++ A K ++ + + + W + A++ + + P ++ Sbjct: 63 TAYQALKDACKDLFARQFSYQEKKANGNIRN--VMSRWVSQIAYNDNEATVDLIFAPAVV 120 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ-LP 195 PF L+ +FT++ L + +++ YA+RLYE L Q+R + ++++ ++ L Sbjct: 121 PFITRLEEQFTKYELQQVSSLSSAYAIRLYELLIQWRSTGKTP--TIELQEFRKKLGVLD 178 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 Y RM + R L++ + +IN T + + Y + K+GR + F+F+ + Sbjct: 179 NEYLRMAHLKERVLELSIKQINEHTDITVKYEQHKRGRSISGFSFTFKQKKKDSPS 234 >UniRef50_C8Q373 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q373_9ENTR Length = 248 Score = 243 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 123/230 (53%), Positives = 165/230 (71%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 S I QSN++TEAAY L+RDQKR+L+L V +IR + + G+CE VA+YA+++ L Sbjct: 18 SKIIAQSNEMTEAAYHLTRDQKRILFLAVGRIRNATKGGDKSAGLCEFTVAEYADMYNLP 77 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 S EASKDIR AL FA KEV +RPEED G+EKG E +PW IK+A+SP RG Y VH+NPY Sbjct: 78 STEASKDIRNALAGFAAKEVCIFRPEEDEGNEKGSEVYPWMIKKAYSPRRGTYIVHLNPY 137 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 L+PFF L+ RFT+ ++ + ITNPYA+RLYESLCQY+ +GSG L ++W+IERY L Sbjct: 138 LMPFFTSLEKRFTKIKIKDVAGITNPYAIRLYESLCQYKNAEGSGFAVLGVEWMIERYGL 197 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 P+SY +M +F+R FL V EI +T M ++Y EKK G + TH F+++ Sbjct: 198 PKSYLKMAEFKRGFLVKAVKEIKEKTHMTITYSEKKSGNRITHFQFTYQQ 247 >UniRef50_P95424 Replication initiator protein n=3 Tax=Pseudomonas RepID=P95424_PSEAC Length = 237 Score = 239 bits (610), Expect = 7e-62, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 102/234 (43%), Gaps = 11/234 (4%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 ++ QSN L EA+++L+ ++KR++ I + DG I +A++FGL Sbjct: 6 DNKVTQSNRLVEASHTLTLNEKRLVLCAASLIDPRKPLPK--DGYLTIRADAFADVFGLD 63 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A + + A ++ Y K E W + +G + +P Sbjct: 64 VRHAYEALDDAASRLFRADIRRY------SKGKIVERMRWVFHVKYREGQGCVELGFSPT 117 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 ++P L FT ++L + +++ YA+RLYE + Q+ K G +D + + L Sbjct: 118 VLPHLTMLNREFTSYQLKQIGSLSSFYAVRLYELMSQFLKL---GQRECTLDQLRQMLDL 174 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 YQ + + R R L + E+N+ T + ++ +++GR+ F+ + Sbjct: 175 GDKYQDVKNLRVRVLDPALKELNAGTDLAVTAEPRRQGRKIVGFSFTITKNDQL 228 >UniRef50_D0WD49 Initiator RepB protein n=3 Tax=Neisseria RepID=D0WD49_NEILA Length = 369 Score = 233 bits (596), Expect = 3e-60, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 103/229 (44%), Gaps = 7/229 (3%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 +V+ N L A+Y+L ++R++ L + + R + + +D + I + Y F Sbjct: 4 KNLVVKDNALINASYNLELVEQRLILLSIIEARTTGKGITANDRL-TITASSYMNNFHTN 62 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A K ++ A + ++ F E + W + A+ + + P Sbjct: 63 RNTAYKALKDACNNLFERQFSFI---EKTPKGEKVVRTRWVSQVAYIEQQATVELVFAPN 119 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 + P L+ FT + L + +++ YA+RLYE + +R + + S + ER + Sbjct: 120 VAPLITMLEKNFTSYELDQVSSLSSKYAVRLYEIIISWRAAGKTPMFSTM--ELRERLGV 177 Query: 195 -PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 P YQ+M F+R+ L V +IN +T + ++Y + K+GR+ FS Sbjct: 178 MPDEYQKMELFKRKVLDFAVKQINDKTDISITYEQHKEGRKIVGFTFSI 226 >UniRef50_D0SRM6 Replicase n=2 Tax=Acinetobacter RepID=D0SRM6_ACIJU Length = 334 Score = 232 bits (592), Expect = 9e-60, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 104/232 (44%), Gaps = 6/232 (2%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 +V+ N L A+Y+L ++R++ L + + R++ + +D + IH + Y + F + Sbjct: 2 LVVKDNALINASYNLELVEQRLILLAIIEARETGKGINANDAL-TIHASSYIQNFNVQKH 60 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 A ++ A + ++ + ++ W + + G + P ++ Sbjct: 61 TAYGALKDACRDLFSRQFSYQELSPKGN--VINQTSRWVSQIGYIQEEGSVQLIFAPAVV 118 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP- 195 P L+ +FT + L + + + YA RLYE L +R + + + ++ + + L Sbjct: 119 PLITQLEQQFTSYDLEQVSTLKSKYATRLYEILISWRSVGKTPM--IGLEELRGKLGLGV 176 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 Y+ + +F+ R L++ + +IN T + + Y + KKGR F F+ Sbjct: 177 NDYKLLANFKLRVLELALEQINEHTDIFVKYEQHKKGRSIIGFSFKFKQKQQ 228 >UniRef50_Q6XUP4 RepA n=4 Tax=Pseudomonas RepID=Q6XUP4_9PSED Length = 288 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 111/232 (47%), Gaps = 14/232 (6%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 R+ +SN L A+Y L+ +++R++ + ++ ++ + Y++I+G+ Sbjct: 16 RVTKSNTLITASYRLTLNEQRLILAAISKLDPRRPMPKK----VSVSAVDYSDIYGVQLR 71 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 A + ++ A +++ + D G E W + + G + +++ Sbjct: 72 HAYEQMKVAADELYERDIKTF-------DGSGMERKRWVDRAKYLDGEGRVELSFTIHVM 124 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 P+ L ++ T + L + + ++ RL+E L Q+RK +G ++++ + L Sbjct: 125 PYLTMLYSKVTSYDLRRVACLDSSHSFRLFEMLMQFRK---TGWAYIEVEALRVALGLSD 181 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 +YQR + R+R + V E+ +++ + +SY +++GR+ I F+F D+ + Sbjct: 182 AYQRFNNLRQRVIDPAVEELKTKSNLDVSYELRREGRKVIAIKFTFCDLAQL 233 >UniRef50_C5SD11 Initiator RepB protein n=2 Tax=Allochromatium vinosum DSM 180 RepID=C5SD11_CHRVI Length = 285 Score = 232 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 111/228 (48%), Gaps = 6/228 (2%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + ++N L EA Y L+ ++R+L L + ++ + I A+ +F + Sbjct: 5 QLTVTKANSLVEATYHLTLAEQRLLLLVISRLDSRVEL--DSRIPHTITAAEVMTVFQVG 62 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 + A + + +A + + V + P+ + W + P G + Sbjct: 63 ESRAYQILEEAAERLYTRSVTIHEPDPRQPKSDRLVT-RWVAAVNYKPGTGAIELFFAQP 121 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 ++PF L+ RF Q+ L+ +++ YA+RLYE L Q+R +G +++DW+ ER+ L Sbjct: 122 IMPFISQLKARFCQYHLANIVPMSSVYAVRLYELLIQWRD---AGTRRVELDWLRERFLL 178 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 Q Y + DF+R LQ+ +++IN+ + + + + + K+GR + F+F Sbjct: 179 GQKYASIRDFKRYVLQIAIDQINTHSDLWVKWEQHKRGRVVHALTFTF 226 >UniRef50_C8PWL8 DNA replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWL8_9GAMM Length = 310 Score = 231 bits (589), Expect = 2e-59, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 107/239 (44%), Gaps = 9/239 (3%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 IV+ N L A+YSL ++R++ L + + R++ H+ + Y F + Sbjct: 2 KKELIVKDNALINASYSLELTEQRIILLAILKARENK---TPHNQELIVTAQSYITAFNV 58 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A K ++ A + ++ + R + E W ++ + + Sbjct: 59 HRNTAYKTLKTACDNLFTRQFTYQRYNSNGNVE--VVKTRWVQSVIYAENESYIKIKFTD 116 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++P L+ FT + L + + + +++RLYE L QYR G + + +D + + Sbjct: 117 EILPLVTMLEKHFTSYELQQVSSLKSVHSIRLYELLIQYRTV---GKIEISLDDLRLKLG 173 Query: 194 LPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 + +S Y RM +F+ R L V + +IN + + + Y + K GRQ T +F+F+ S T Sbjct: 174 INESEYPRMDNFKNRVLDVGIQQINEHSDITVKYNQVKTGRQITGFIFTFKQKPSKATA 232 >UniRef50_C6RK77 DNA replication protein n=2 Tax=Acinetobacter radioresistens RepID=C6RK77_ACIRA Length = 313 Score = 226 bits (577), Expect = 5e-58, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 110/235 (46%), Gaps = 6/235 (2%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 +V+ N L A+Y+L ++R++ L + + R+S + +D + +H Y F + Sbjct: 2 RELVVKDNALINASYNLDLVEQRLILLAIVEARESGKGINANDPLV-VHAESYINQFNVH 60 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A + ++ A ++ + + + E + W + + + + + P Sbjct: 61 RNTAYQALKDACHDLFVRQFSYQKVNDRGNVE--HYRSRWVSEIGYVDNEAIVKLIFAPA 118 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ- 193 ++P L+ +FT++ L + ++T+ YA+RLYE L +R + + +++ +R Sbjct: 119 IVPLITRLEEQFTKYELQQVSQLTSAYAVRLYELLIAWRSTGKTPV--IELADFRKRIGI 176 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 L Y+RM F+ L++ +N+IN T + ++Y + KKGR F+F Sbjct: 177 LETEYKRMERFKTSVLELAINQINEHTDINVAYEQHKKGRSIVGFSFNFSQKEKK 231 >UniRef50_C5SDE1 Initiator RepB protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SDE1_CHRVI Length = 281 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 6/227 (2%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGT-LQEHDGICEIHVAKYAEIFGLTSA 76 + +SN L EA YSLS + R+L + QI G D +H + A++F + S Sbjct: 9 VTKSNSLVEACYSLSLAELRILLATIAQIDSRPGAAPISSDTPFPLHASDLAKLFRVPSK 68 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 +A + +R ++V+ Y W + G ++ P ++ Sbjct: 69 QAYELLRDGASRLYERDVII--DAATTAHPNKYTKSRWVSAITYVEDEGYVDLYFAPKVL 126 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 PF L + FT++++ +++ YA+RLYE L Q+ K G L ID I + Sbjct: 127 PFLTNLASEFTRYQIKHVAPMSSVYAIRLYELLKQWVKI---GERQLSIDEIKTMLMIDN 183 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 +Y + + +R + V +IN + ++++ ++K+GR T ++F Sbjct: 184 AYSSVTELKRWVVTPAVQQINKHSDLKVTMEQRKRGRTITALIFKIE 230 >UniRef50_C9S245 Initiator RepB protein n=7 Tax=Geobacillus RepID=C9S245_GEOSY Length = 383 Score = 223 bits (568), Expect = 5e-57, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 105/228 (46%), Gaps = 14/228 (6%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + + +SN L EA Y LS +++++ + QIRK D + + ++ + +++E+ G Sbjct: 11 NSAVTKSNALIEANYKLSTIEQKIILYIISQIRKDDADFK----MYKLPIQEFSELLGYR 66 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 + ++R+ K+ K + + + W + G S+ +P Sbjct: 67 GSPKYTELREITKNLMRKVLEIRE-------GQKLKQLSWVSYVEYDEHSGYVSLAFDPR 119 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 L P+ + L+ FT +RL E+ + Y++R+YE L +++ G V +++D + Sbjct: 120 LKPYLLQLKREFTTYRLKNVMELKSSYSIRMYELLKRWQ---YMGEVVIRLDDLRMMVGA 176 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 Y +F++R L EI+ +T + +Y E ++ R+ I F Sbjct: 177 GDKYSEYHNFKKRVLNPAKKEISEKTDIMFTYEEIREKRKVAAIRFQI 224 >UniRef50_C8PV39 DNA replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV39_9GAMM Length = 341 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 6/240 (2%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSD---GTLQEHDGICEIHVAKYA 68 +K +V+SN L EA+YSL+ + R+L + + + D L I +YA Sbjct: 2 KKPQDMVVKSNTLIEASYSLTVQEIRLLDIALADLATYDECEKDLLTMHEFVHIRADEYA 61 Query: 69 EIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 +I+ + A +R+A ++ + + E + + W A+ +GL Sbjct: 62 KIYDVDMKTAYTALREASENLFTRYFTYSVQSEKFPTHQEHRKARWVWNIAYVEGQGLVK 121 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 + P LI L+ F+++ L + +T+ YA RLYE + Q+RK + S+ + + Sbjct: 122 LAFTPDLIKLAGKLKGDFSRYHLKQKAPLTSVYAHRLYEMMMQWRK--SKTVPSVSYNEL 179 Query: 189 IERYQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 R+ + Y+R+ +F+ R L + +IN T + +SY + K+GR+ +F F Sbjct: 180 RHRFDIDDKEYKRIANFKARALDPAIKQINEHTDIIVSYEQYKEGRKVAGFIFKFNFKDK 239 >UniRef50_C6RSQ0 Replicase n=4 Tax=Acinetobacter RepID=C6RSQ0_ACIRA Length = 327 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 122/237 (51%), Gaps = 6/237 (2%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 I + N+L EA+Y+L+ ++R++ + + R+ + L D + IH ++Y + F L Sbjct: 15 NLIYKDNNLIEASYALTLSEQRLILVAIIAAREIEKELT-SDTLLTIHASEYMKHFNLGR 73 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 A + ++ A + + + + + G Y+S W K + + P + Sbjct: 74 QAAYEALQGACDNLFERRLTYKAIDPVTGKPAVYKS-RWVSKVGYVKEAACAQLIFAPDI 132 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ-L 194 + F+ L+ +FT++ L + ++++ YA+RLYE L ++R G + + + + ++ L Sbjct: 133 LQLFVKLEEKFTRYELKQISQLSSVYAIRLYELLIRWR---SKGKLYISMVELRDKLGLL 189 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 Y+ M DF++R L V +++IN T + +SY +KK+GR THI FSF S+ Sbjct: 190 ENEYKTMGDFKKRVLTVAIDQINKLTDIDVSYEQKKEGRTITHIEFSFNQKASLIVS 246 >UniRef50_B2UKE3 Initiator RepB protein n=2 Tax=Ralstonia pickettii RepID=B2UKE3_RALPJ Length = 251 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 9/232 (3%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSD--GTLQEHDGICEIHVAKYAEIFG 72 + SN LT AA+SL+ +KR++ + + +E + A+YAE FG Sbjct: 18 ERNVTMSNALTRAAHSLTLAEKRLIAACIAKNDSIPFVELRREGAWRVRLSAAEYAEAFG 77 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + A + ++ A S + V R +E F W + G + Sbjct: 78 VDANTAYEQLQGASDSLFNRYVRTVRETRRGPEE---FKFRWVGSAKYHKGEGWIELVWF 134 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 ++P GL+ FT ++L + + + YA RL+E + +G + I+ Sbjct: 135 QEVVPHLFGLRQEFTTYKLRQAAALRSVYAWRLFECFKSW---AATGRYTPTIEEFHRAM 191 Query: 193 QLPQSY-QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 +S + D RRR ++ V E+ + + + + + GR+ + F FR Sbjct: 192 DASESQRKNFKDLRRRVIEPAVKELREKNGLHIEWEPETAGRKVVKLDFRFR 243 >UniRef50_UPI00004A2E95 putative replication initiator protein n=3 Tax=cellular organisms RepID=UPI00004A2E95 Length = 392 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 101/235 (42%), Gaps = 6/235 (2%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N +V+ N L A+Y+L ++R++ L V + R+++ ++ D I Y FG+ Sbjct: 2 NKNLVVKDNALINASYNLELVEQRLILLAVVEARRTNQEIK-SDDFLTICAENYINEFGV 60 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A + ++ A + + + E + W ++ + + + + Sbjct: 61 HRNVAYQALKDACSHLFERRFTYQKLTPKGNKETI--TSRWVQSVSYVENEAIVRLKFSD 118 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 + P L+ FT + L + +T+ YA+RLYE + +R + + ID + R Sbjct: 119 DVAPLITLLEKNFTSYELEQVAGLTSKYAVRLYEIIIAWRTKGRTPM--FDIDELRNRLG 176 Query: 194 -LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + Y RM +R+ + V ++N +T + ++Y + K GR+ F + Sbjct: 177 VINDEYPRMETLKRKVIDFAVKQVNDKTDIDITYEQHKNGRKIVGFTFVVTQKSK 231 >UniRef50_C0VLN3 Replication protein n=6 Tax=Acinetobacter RepID=C0VLN3_9GAMM Length = 309 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 119/237 (50%), Gaps = 13/237 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N +V+SN + EA+Y LS ++R++ + +I K+ D + + V + ++ G+ Sbjct: 18 NKNHVVKSNQVIEASYQLSAVEQRIVLAAISRIPKNQPITD--DELYPVSVDELKQL-GV 74 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A +D+++ + + + ++ W + S+ + + + Sbjct: 75 HEKTAYRDLKEGINRLYERSINLSIDDKSI-------KMRWVQEIQFLDSQSVIGIRFSK 127 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++PF L FT++ LS+ I + Y +R+YE L QYR+ G + ++ + + Sbjct: 128 PILPFISNLSREFTKYALSDIAGINSGYGIRIYELLVQYRQI---GKREISVESLRTMLE 184 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 L + Y DF++R + +++IN +P++++Y +KK GR+ THI+FSF++ + T Sbjct: 185 LGKKYPLFADFKKRVIDTAIDQINEYSPLKVTYEQKKTGRKVTHIIFSFKEKSKSIT 241 >UniRef50_Q6J2B8 Replication protein n=2 Tax=Gammaproteobacteria RepID=Q6J2B8_PSEYM Length = 284 Score = 215 bits (549), Expect = 8e-55, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 99/251 (39%), Gaps = 7/251 (2%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 +E + ++ I N LT + L+ +KR++ + ++ Sbjct: 33 SENYDASIERVPGERWITMGNALTRSGQGLTLAEKRVVGCALSKMDSRKAVPIGTIPTTR 92 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYR---PEEDAGDEKGYESFPWFIKR 118 I+ +YAE FG+ A ++ A + + FY+ + W + Sbjct: 93 INATEYAEAFGIDLDTAYNQLQSAANQLYKRSITFYQAASSRQGKPLPPTRVQMRWVGRV 152 Query: 119 AHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 + G ++ P L+P GL+ +FT ++L + + + Y+ RL E L +++ + Sbjct: 153 HYQKGEGWVELYWWPELLPQLTGLRKKFTSYQLQQASALRSIYSWRLLELLTRFQD---T 209 Query: 179 GIVSLKIDWIIERYQLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 G + + I+ + + RRR ++ V E+ + + + KKGR+ Sbjct: 210 GWLEITIEDFAQSMDATEKQMANFAAIRRRIIEPAVKELTEKDGWLIDWRAIKKGRKVAM 269 Query: 238 IVFSFRDITSM 248 + F F+ + Sbjct: 270 LRFDFKKNNQL 280 >UniRef50_B0VVG2 Replication protein n=4 Tax=Acinetobacter RepID=B0VVG2_ACIBS Length = 303 Score = 212 bits (541), Expect = 7e-54, Method: Composition-based stats. Identities = 55/244 (22%), Positives = 112/244 (45%), Gaps = 13/244 (5%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 I +V+SN + EA+Y LS ++R++ + +I +++ D I + + Sbjct: 2 EIKMMSPSKKELVVKSNQVIEASYQLSSTEQRIVLAAISKISRAEDITD--DEIYRVTID 59 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 ++ G+ A +D++ + + + +E W S+ Sbjct: 60 DLKKL-GVHEKTAYRDLKDGVNRLYDRSINLAINDESI-------KMRWIQSIRFLESKS 111 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 + + + ++PF L FT++ LS+ +++ YA+R+YE L QYR G + I Sbjct: 112 VVGIRFSKEILPFISNLSREFTKYSLSDIAGMSSAYAIRIYELLSQYR---SIGKREIPI 168 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 + + +L + Y D +R + V++IN +P+ +SY + K GR+ THI F+F++ Sbjct: 169 ESLRSMLELGKRYPLSADLKRWVIDTAVDQINEHSPLNVSYQQIKTGRKVTHIQFTFKEK 228 Query: 246 TSMT 249 + Sbjct: 229 SKNI 232 >UniRef50_Q6TV38 Putative replication initiator protein n=1 Tax=Bacillus methanolicus RepID=Q6TV38_BACMT Length = 420 Score = 212 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 14/232 (6%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 + K S + +SN L EA Y L +++++ IR +D + + + V ++ ++ Sbjct: 16 ETKTSNFVTKSNKLIEANYKLGVVEQKIILCLASNIRPTDSDFKTY----TLPVKEFNKL 71 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 GL + ++R+ K K K W A++ S G + Sbjct: 72 LGLKGSPKYTELRKITKELMQKVFEVR-------INKKVIQVAWLSYVAYNESEGTIDIR 124 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 +P+L P+ + L+ FT ++L ++ + YA+R+YE L QY K + +D + + Sbjct: 125 FDPFLRPYLLELKKEFTSYKLENVVKLKSSYAIRIYELLKQYEKLQ---ERTFLLDDLRK 181 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 Y +F++R L E+ +T + E K GR+ I F Sbjct: 182 MLGAEDIYPAYGNFKQRVLMPAQKELKKKTDISFEIEEIKVGRRVNKIKFLI 233 >UniRef50_Q0QVX3 PNL18.2_p1 n=2 Tax=Neisseria lactamica RepID=Q0QVX3_NEILA Length = 257 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 114/244 (46%), Gaps = 12/244 (4%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 V+ K S +V SN +T +A +L+ +KR+L + ++ +G ++ + Sbjct: 18 VVKQSKDLGSRNVVISNYITRSAQTLNLVEKRILMAGIAKLGGVNGEIK-------LTAQ 70 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 +YA+ +G+ A +++ A+ + + + + + G + G + W + G Sbjct: 71 EYADTYGVDIRTAYNELKGAVHTLMKRTLSWQITD---GKKIGTRTTIWVQGYDYFKDEG 127 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR-KPDGSGIVSLK 184 L + Y+ PF L+ FT+++L + + + Y+ RL E Q + K DGSG +S+ Sbjct: 128 LVKFRFSEYVFPFLFELEREFTKYQLQQAAALRSIYSWRLLELFEQMKDKTDGSGWLSMS 187 Query: 185 IDWIIERYQLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 I+ + +SY+ R+R ++ + E+ + + + +K+GR+ ++F F+ Sbjct: 188 IEEFWHAMEATESYRANFQLLRKRVIEPAIKELTEKDNWLIEWEARKRGRKVATLLFKFQ 247 Query: 244 DITS 247 Sbjct: 248 RNPQ 251 >UniRef50_A0R878 Initiator RepB protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R878_PELPD Length = 274 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 98/235 (41%), Gaps = 15/235 (6%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 S +V +N L +A SLS +KR+++ ++ + G +H ++YAE F + Sbjct: 50 QSKNVVVANTLVRSAQSLSLAEKRIVFAAAAKMGNNFGE-------VILHASEYAETFDM 102 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 +A + ++ A++ + P+ + W K + + + Sbjct: 103 PVKQAYEQLKNAVEGMRTRYFTLAVPDREG---VMIWKINWLQKIGYDDGKARVGLRFCE 159 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++P+ L FT+++L + + + ++ RL E Q SG +++KI+ + Sbjct: 160 DVLPYLCDLTKEFTKYKLKQACALRSVHSWRLLELFEQ----QSSGWLAIKIEDFHHAME 215 Query: 194 LPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 S + +R+ ++ + E+ + + + K GR+ + F+F+ Sbjct: 216 SNDSCRNNFAQLKRKIIEPAIKELREKDNWLIDFSFTKAGRKVDLLKFTFKKNPQ 270 >UniRef50_Q1Q7S1 Initiator RepB protein n=3 Tax=Bacteria RepID=Q1Q7S1_PSYCK Length = 315 Score = 209 bits (532), Expect = 7e-53, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 5/228 (2%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 N I + N L A+YSL ++R+++L + + R+ L + G+ I Y E F Sbjct: 2 SNKQLIAKDNKLIGASYSLGIPEQRLIFLAIIEARE-QKQLIDAKGVLNIRAKSYQEQFK 60 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + ++ A + E G ++ W K ++ G+ + Sbjct: 61 VEKHTSYDALKSATSGLFDAHFEYEDIHEKTG-KQARHVIRWVQKISYIDDAGMVELQFT 119 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 +IP L ++T++ L + E+ + Y++RLYE + Q++ + + +D + + Sbjct: 120 DAVIPLITRLSEQYTEYELKQVSELQSEYSIRLYELMMQWKAVGKT--NKISVDDLRRKL 177 Query: 193 QL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 + P+ Y++M +F+ R L +N+IN T ++ Y + K GR Sbjct: 178 GVEPKQYKKMNNFKARVLDHAINQINEHTDIQAEYDQYKDGRAIAGFT 225 >UniRef50_A7M7E8 RepA n=5 Tax=Enterobacteriaceae RepID=A7M7E8_9ENTR Length = 329 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 12/237 (5%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +VQ NDL E AY ++ D+ R+L L + QI D + D + ++ Y I+G+ Sbjct: 8 VVQGNDLLEGAYGVTLDEMRLLNLALAQI---DSRKPQPDMLYTLYPRDYQRIYGVNPTS 64 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH--SPSRGLYSVHINPYL 135 + + +R A S K V Y+ ED + WF + + + + + Sbjct: 65 SHRQLRDAADSLMKKPVTIYK--EDRNGKVRTVQLSWFSRLEYVSNDDHSAVVLRFGQDV 122 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR-----KPDGSGIVSLKIDWIIE 190 P+ L+ FT+ + P+++RLY L + R + G+ V+L+I+W+ E Sbjct: 123 APYLFELKESFTKLDFINLARLDTPFSIRLYSWLVKARNLTRYRSHGTIEVTLEIEWMRE 182 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + L YQ DFR++ LQ ++ IN+ T + + + K GR I F++ D ++ Sbjct: 183 KANLQGKYQDYRDFRQKLLQPSLDRINASTDISVIWEPVKIGRSVHAIKFTYVDEST 239 >UniRef50_C6QRE9 Initiator RepB protein n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRE9_9BACI Length = 391 Score = 207 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 14/235 (5%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 + +SN L EA Y L +++++ I D Q + + ++ E+ G S Sbjct: 14 NLVSKSNSLVEARYKLGTMEQKVIAAIASNISPDDKDFQTY----TFSIKEFKELIGSKS 69 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 +I + + +P E W K ++ G +V +P L Sbjct: 70 KNIYHEIDKVMTRLM-------QPFNFINAEGKPTKIAWLSKATYNVGEGTVTVRFDPDL 122 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 PFF+ L +FT+++L + Y++R+YE L Y +G + + + + + Sbjct: 123 KPFFLFLNEKFTRYKLGNIIHLRRSYSIRIYELLKSY---EGLAERTFTLKELRGKLGVE 179 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 Y +FR+R L E+ +T + +Y KKGR + F + T Sbjct: 180 DKYPNWINFRQRVLDPAQEELEEKTDIMFTYEPIKKGRSVEKVKFIIKPNPKNKT 234 >UniRef50_C5S4L5 Replication protein n=3 Tax=Pasteurellaceae RepID=C5S4L5_9PAST Length = 321 Score = 203 bits (518), Expect = 3e-51, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 116/236 (49%), Gaps = 10/236 (4%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 + +V+SND EA+Y ++ D+ R+L L + QI + Q H E VA++AE F Sbjct: 2 SKNLIVVKSNDFVEASYKITLDEMRVLLLTIGQI---NSKAQNHRRDFEFTVAEFAERFN 58 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 A +++A+ G+ V + ++ + ++A+ G + + ++ Sbjct: 59 TDEKSAYAQVQRAVDMLGGRWAVIEK------NKNIERKVTFLTEQAYFKGEGRFQIILH 112 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 L+PF +Q +FT++ L ++ +A+R+YE + QYR ++ + + E Sbjct: 113 EKLMPFLSDIQGKFTEYNLKYIARFSSFHAIRIYEIITQYRNSKEK-ERTVLVSELKEWL 171 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 Q+ Y R +F+ R L+ ++EIN ++ + +S+ + K+GR I F + ++ Sbjct: 172 QVADKYPRWDNFKARVLEPAISEINEKSDLLVSFKQIKQGRSIHAIKFLIKQNKTI 227 >UniRef50_D0V0D3 RepA n=1 Tax=Moraxella bovis RepID=D0V0D3_MORBO Length = 386 Score = 203 bits (517), Expect = 4e-51, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 9/236 (3%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 IV++NDL A Y L+ +++R++ + +I + EI ++++ F + Sbjct: 3 KDLIVKANDLVVAGYELTANEQRLILTAIAKISPTQLDPNTG---YEITAKEFSKRFNIH 59 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESF---PWFIKRAHSPSRGLYSVHI 131 A +++R+A + +V E+ P+F + Sbjct: 60 PKTAYRELREAASRLYERSIVIKTKEQTLKARWADMIILDNPYFEDVMKDEDWKRVVIWF 119 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 +P +IPF I L FT+++LSE E ++ Y+ R+YE + Q++ +G + + I + ER Sbjct: 120 SPQVIPFLINLTENFTKYKLSEIAEFSSSYSFRIYEFMMQFQ---STGYIKISIKDLRER 176 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 QL Y D + ++ V EIN ++P ++ Y K G++ TH+ F+ Sbjct: 177 LQLGDKYPASKDLKLWVIETAVKEINEKSPYKVDYNLIKTGKKFTHLELRFKQKEK 232 >UniRef50_B0VVF3 DNA replication protein n=7 Tax=Acinetobacter RepID=B0VVF3_ACIBS Length = 326 Score = 203 bits (517), Expect = 5e-51, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 114/250 (45%), Gaps = 18/250 (7%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + ++++N L +A+Y+LS ++R++ L + + + D + IH +YA+ F + Sbjct: 3 NDLVIKNNALIDASYTLSLVEQRLIGLALVKANNQHQEIT-SDTVLTIHAGEYAQQFNVD 61 Query: 75 SAEASKDIRQALKSFAGKEVVF--------------YRPEEDAGDEKGYESFPWFIKRAH 120 + A + +++A + + + + GD W K + Sbjct: 62 GSVAYRALKEASERLFLRYFSYTLYGLDFGKEYTLKRPKKLKDGDIPTIMKSRWVQKVGY 121 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + S GL + ++ + FT + LS+T E T+ YA RL+E L +++ Sbjct: 122 TESEGLLHFQLTSDVVRLVANSKEYFTSYYLSQTTEFTSTYATRLFELLMKWKNVGHIPF 181 Query: 181 VSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 ++I+ + + + P+ Y+ + +F+ R L V V ++N + ++ Y + K+GR T Sbjct: 182 --IEIEQLRGQLGVEPKQYKIISNFKLRVLDVAVEQVNQYSDYKIEYEQHKQGRTITGFS 239 Query: 240 FSFRDITSMT 249 F F+ + T Sbjct: 240 FKFQPKATKT 249 >UniRef50_Q0QVZ7 Putative replication initiator protein n=2 Tax=Neisseria lactamica RepID=Q0QVZ7_NEILA Length = 245 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 102/236 (43%), Gaps = 12/236 (5%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 +V +N +T+A L+ +KR+++ + ++ + G ++ ++Y+ + + Sbjct: 18 KNVVMANAITQAGQGLNLAEKRIIFAVIAKM----SGKIDSSGFVKLTASEYSATYNIPV 73 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 A ++ A + + + ED F W + G + + ++ Sbjct: 74 DLAYTQLKSASEGLFNRYISLR---EDDAKGVLVSRFRWLDACKYHDGCGFVIISFSKHV 130 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 IP+ I L +FT+++L + + + Y+ RL E L Q + + + ID + ++ P Sbjct: 131 IPYLIDLDEKFTKYKLQQACALRSVYSWRLLELLKQ----QSNCWLHISIDDLHYAFETP 186 Query: 196 QSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 S + R + ++ V E+ ++ R+ + +K+GR+ ++F F T Sbjct: 187 ASIRNNFGKLRSKIIEPAVRELTAKDGWRIEWEAQKEGRRVASLLFKFEKAAQRET 242 >UniRef50_P17492 Replication protein n=8 Tax=Proteobacteria RepID=REPA_NEIGO Length = 328 Score = 202 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 16/230 (6%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF-G 72 N +V++N L EA Y LS D+ R+L L + + + + I + VA + F Sbjct: 3 NDLVVVKANSLIEANYRLSIDEIRILALTIGTMDP-----KSNQKIFDFTVADFVREFPE 57 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 ++ A K I+ A+K + V D+ F W R + G + + + Sbjct: 58 ISQDNAYKQIQAAIKRIYDRSV-------KTEDKDRVTEFRWVSSRTYFKKEGRFRIAMT 110 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 ++P+ L+ +FTQ++L + +++R+YE + QYR G + ++ + E Sbjct: 111 DEVMPYLTQLKGQFTQYQLKHIAYFNSVHSIRIYELITQYRSV---GSREITVEKLKEWL 167 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 Q+ Y R +R L+ + EIN ++ + + + K+GR + F Sbjct: 168 QVENKYPRFNSLNQRVLEPAITEINEKSDLVVEVEQIKRGRTIHSLNFVI 217 >UniRef50_Q2RYM1 Initiator replication protein RepB n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYM1_SALRD Length = 336 Score = 202 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 105/235 (44%), Gaps = 9/235 (3%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 + R+V+SN L ++ + ++ + R++ + + Q+ K D +E +++ A++ G Sbjct: 8 DDQARVVKSNRLVQSKMNWTKLEHRVVAMLIAQLEKDDKEFEEQ----RVYIKDIADLSG 63 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + +++ +D + Y+ + + G N Sbjct: 64 RNGKSLYDQAEEICQKLLDQKIHIRTQTDDG--RRRYKGYNCMSSCEYVEGSGYIEAKFN 121 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 + PF + L+ RFTQ+ L ++++ ++MR+YE L +G + L I+ + E Sbjct: 122 DDMQPFLLQLKRRFTQYNLKCFMQLSSQHSMRIYELLKM---REGIKYLRLGIEELREVL 178 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 SY+R DF+R L+ E+ +T + +Y +++G+ I F ++ S Sbjct: 179 SCEHSYERFADFKRWVLERARGELWDKTDIYFNYQVEREGQTPVRINFVIKENDS 233 >UniRef50_A0S0J1 Rep n=2 Tax=Acinetobacter RepID=A0S0J1_9GAMM Length = 307 Score = 202 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 108/231 (46%), Gaps = 8/231 (3%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N+ +V+ N L +A+++LS ++R++ L + R+S D E+ V+ Y F + Sbjct: 4 NNKLVVKDNALIDASFNLSLIEQRIMLLAIVGARESSNL--TPDTPIEVLVSDYIHQFKV 61 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 S A +R+A K+ +E + + + + W K + S GL ++++ Sbjct: 62 DSNNAYGLLREAAKTLKRREFSYL---DRYKGLEALTTANWVNKVTYVDSSGLIVLYLSK 118 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 +I L +FT++ + + + + Y++RLYE L ++ + I+ + + Sbjct: 119 EVISLISRLSEQFTKYHIEQVSDFRSKYSIRLYELLIKWLNVAKT--EKYSINDLRSKLG 176 Query: 194 LPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 L Y M +F+ L V+EIN T + + Y + KKGR T I F + Sbjct: 177 LDATEYSTMSNFKSNVLDRAVSEINKHTNITVEYDQFKKGRVITDIQFRIK 227 >UniRef50_C8PXW7 DNA replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PXW7_9GAMM Length = 321 Score = 200 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 117/230 (50%), Gaps = 5/230 (2%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 +P++V+SN+L +A+YS+ + R++ L + R+S+ L++ + + I YA+IF ++ Sbjct: 6 NPKVVKSNELIKASYSMDLVEHRLIGLAIYTARESNKGLRKFEHLV-IKPNTYAKIFNVS 64 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A K ++ A + ++V F E ++ W + A+ ++ + P Sbjct: 65 LDAAYKALKDAAEKLFERQVTFRDTYEGDPRKR---KTRWVSEIAYIENKAELQLIFAPA 121 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 ++ L+ +FT++ L T + Y+ RL+E + Q+ I + + + E++ L Sbjct: 122 IVDEITKLEEQFTEYYLKMTANFDSQYSYRLFELVKQWNLNKVKEIPNFDLSTLREQFGL 181 Query: 195 PQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 + Y+R+ +F+++ L V EIN T + +SY + K GR T F+ + Sbjct: 182 EKHEYERLDNFKKKVLDKAVKEINDHTDINISYSQIKSGRVITGFKFNVK 231 >UniRef50_B3AF43 Plasmid replication protein n=4 Tax=Enterobacteriaceae RepID=B3AF43_ECO57 Length = 334 Score = 199 bits (506), Expect = 9e-50, Method: Composition-based stats. Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 13/251 (5%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 MA + + Q N L E AY ++ + R+LYL + +I D + Sbjct: 1 MALRNNKRNDCNDVQSLLTQGNQLLEGAYDITLIEMRLLYLALTKI---DSRKPQPASEY 57 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 + +Y + F L S + ++ A S K +V Y E + F WF + Sbjct: 58 TLFAKEYRDAFSLDSKNCYEQLKSAASSLGSKPIVTYEWNETKKRIDAVKRF-WFSSIRY 116 Query: 121 SPS--RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 ++ + + + L++ FTQ L ++ P++ RLY L +Y+ + Sbjct: 117 GVGNSESDITLRFSDSVSQYLYELKSEFTQMNLEHMVKLDTPFSFRLYSWLYKYKNLSRN 176 Query: 179 GIVS-------LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 S + I+W+ ER L Y DF++R L V+ IN+ T + ++Y K Sbjct: 177 KKESGVISTDPITIEWMKERTGLTGKYPVYKDFKKRVLDPAVDIINANTNLSVTYEGIKS 236 Query: 232 GRQTTHIVFSF 242 G++ +VF++ Sbjct: 237 GKRIESVVFTY 247 >UniRef50_A0A1K9 Replication protein n=7 Tax=Enterobacteriaceae RepID=A0A1K9_ECOLX Length = 233 Score = 199 bits (506), Expect = 9e-50, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 106/229 (46%), Gaps = 13/229 (5%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRK-SDGTLQEHDGICEIHVAKYAEIF-GLTSA 76 +SN L EA+Y L+ ++R L L + +++ SD E + +Y + F + Sbjct: 7 YKSNALVEASYKLTLQEQRFLLLCIGRLKSGSDAESTELQKTMTVTAEEYFDSFPDMGRK 66 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA-HSPSRGLYSVHINPYL 135 A +++A+ + ++ D++ E F W RA ++ G + + + Sbjct: 67 NAEVQLQEAIDRLWDRSIIL-------KDDEKREEFRWIQYRAQYAKGEGKAQITFSDAV 119 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 +P+ L+ +FT+ + ++ Y++R+YE L Q+R +G + +D + Sbjct: 120 MPYLTQLKGQFTRVVIKNISNLSRSYSIRIYELLQQFR---STGERIIALDDFRSMLDIE 176 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 YQ ++ L+ CV+E+N ++ + ++ KKGR + F F++ Sbjct: 177 HKYQTYKSLNQQLLRPCVDELNQKSDLAVTLETIKKGRTVVALHFRFKE 225 >UniRef50_D0SHJ5 DNA replication protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SHJ5_ACIJO Length = 311 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 110/230 (47%), Gaps = 10/230 (4%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 K S +V+ N L +A+++LS ++R++ + + + R+ D ++ V Y + F Sbjct: 2 SKESRLVVKDNSLIDASFNLSLVEQRIMLMAIVEARELPKL--TFDTPIKVSVKSYIDQF 59 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 + S+ A + ++ A+ + ++ +Y P D W K ++ +G + Sbjct: 60 KVASSTAYESLQDAVDTLFERQFSYYDPVMDE-----RFKERWIYKASYIDDKGHVVMFF 114 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 P +I L FTQ+ + E + + Y++RLYE L +Y++ S ID + Sbjct: 115 TPTVISMISRLYKNFTQYLIDEVSDFKSKYSVRLYELLIKYKELGSSK--KYTIDELRSL 172 Query: 192 YQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 + Y+ M F+ L V EIN++T +++ Y + K+GR +HI+F Sbjct: 173 LGVENTEYKTMSLFKVNVLDKAVKEINTKTDIQIKYDQFKEGRTISHILF 222 >UniRef50_UPI0001C42EDF initiator RepB protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42EDF Length = 398 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 15/248 (6%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 AE +++ K + QSN L E L+ +KR++ ++ D + H Sbjct: 3 AEQLILSDSKVSPEYLVTQSNSLIETPQDLTLQEKRIILTLASLVQPGDDNFRIH----R 58 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 I V A+I G+ + ++ K V E+ + W + Sbjct: 59 IKVKDLADIIGIKEKNFYTKVENVIEKLQNKMVTIET-------ERSKLNMHWLSSSEYF 111 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 +G + + L PF + L+ +T F+L + + Y +R+YE L QY K Sbjct: 112 KGQGYVELEFSEKLRPFLLELKQNYTPFKLRNVLRLRSEYYIRIYELLKQYEKVKK---R 168 Query: 182 SLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 ++ + + P Y++ + R + E+ +T + + E+K+GR+ + F Sbjct: 169 VFSLEELRYHLNIPPDKYKQYAHLKNRIILRAQEELKEKTDLIFEFQEQKEGRKVVGVAF 228 Query: 241 SFRDITSM 248 + ++ Sbjct: 229 YIKKNRTL 236 >UniRef50_D0T0I0 DNA replication protein n=4 Tax=Acinetobacter RepID=D0T0I0_ACILW Length = 327 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 114/251 (45%), Gaps = 18/251 (7%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + +V++N L +A+Y+LS ++R++ L + + + D + IH +YAE F + Sbjct: 3 NDLVVKNNALIDASYTLSLIEQRLIGLALVKANNQHQEIT-SDTVLTIHAGEYAEQFKVD 61 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYE--------------SFPWFIKRAH 120 S+ A + +++A + + + + G E + W K + Sbjct: 62 SSVAYRALKEASERLFLRYFSYTLYGLEFGKEYTLKPPKKLRDCDIPTTMKSRWVQKIGY 121 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + S GL + ++ + FT + LS+T E T+ YA RL+E L +++ I Sbjct: 122 TESEGLLHFQLTSDVVLLVANSKEYFTSYYLSQTTEFTSTYATRLFELLMKWKNVGH--I 179 Query: 181 VSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 + I+ + + + P+ Y+ + +F+ R L V V ++N + + Y + K+GR Sbjct: 180 PLIPIEQLRGQLGVEPKQYKIISNFKLRVLDVAVEQVNQHSDYTIKYKQHKQGRTIIGFS 239 Query: 240 FSFRDITSMTT 250 F+ + T+ Sbjct: 240 FTLKPKVDKTS 250 >UniRef50_A7FCM5 Plasmid replication protein n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCM5_YERP3 Length = 342 Score = 197 bits (501), Expect = 3e-49, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 113/239 (47%), Gaps = 10/239 (4%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + +VQSN L +AAYSL+ D+ R++Y+ + +I + ++ E F + Sbjct: 17 NGVVVQSNSLIDAAYSLTIDEMRLVYIAMLKIDSKVKLENGLMPEINVTTLEFREAFNIK 76 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL--YSVHIN 132 S + Q + K ++ + +E+ + + WF ++ + ++ + Sbjct: 77 SHTMYNRLNQLGDALLVKPIITFEYDEEKQETVKRKRV-WFTSVSYVDDQESKAINLRFS 135 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRK----PDGSGIVS---LKI 185 P L+PF L++ FT+ + E+ +P+AMRLY+ L +YR+ G G+V + Sbjct: 136 PELLPFLYALKDNFTKVDFTYLAELDSPFAMRLYQWLQKYRRMKKYNKGDGLVETEPFSL 195 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 + I R L Y F+R L +++IN T + ++Y KKG+ I+F++ + Sbjct: 196 EEIKNRTGLSSKYPEYKIFKRDVLDPAIHKINRVTDISVTYKPVKKGKTIIAIIFAYVE 254 >UniRef50_D2TVA4 Plasmid replication protein n=2 Tax=Enterobacteriaceae RepID=D2TVA4_CITRO Length = 335 Score = 196 bits (498), Expect = 7e-49, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 108/250 (43%), Gaps = 17/250 (6%) Query: 6 VINHKKRKNSPRI----VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 V+ + K + + Q N L E AY ++ + R+LYL + +I D + Sbjct: 2 VLKNNKNSDCNDVQSLLAQGNQLLEGAYDITLIEMRLLYLALTKI---DSRKPQPANEYT 58 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 + +Y + F L S + ++ A S K +V Y E + F WF + Sbjct: 59 LFAKEYRDTFSLDSKNCYEQLKSAASSLGSKPIVTYEWNEAKKRIDAVKRF-WFSSIRYG 117 Query: 122 PS--RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 ++ + + + L++ FTQ L ++ P++ RLY L +Y+ + + Sbjct: 118 VGNSESDITLRFSDSVSQYLYELKSEFTQMNLEHMVKLDTPFSFRLYSWLYKYKNLNRNK 177 Query: 180 IVS-------LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKG 232 S + I+W+ ER L Y DF++R L V+ IN+ T + ++Y K G Sbjct: 178 KHSGVISTDPITIEWMKERTGLTGKYPVYKDFKKRVLDPAVDIINANTNLSVTYEGIKSG 237 Query: 233 RQTTHIVFSF 242 R+ +VF++ Sbjct: 238 RKIESVVFTY 247 >UniRef50_C4GNB8 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GNB8_9NEIS Length = 337 Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 102/235 (43%), Gaps = 11/235 (4%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + +V+SN+L A+Y+++ +++R+L + QI T ++ + + V + ++F Sbjct: 5 DLKNNLVVKSNELITASYAMTVNEQRLLLACIGQI--DSRTTLDNGAVFRLSVEQARDLF 62 Query: 72 GLTSAE--ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSV 129 + A +D++ A + ++V P EK + P G + Sbjct: 63 YTKGDQRHAYRDMQDACERLFERKVRIALP------EKQELLTRFVQSIVFDPENGTADL 116 Query: 130 HINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWII 189 ++P+ L+ FT++RLS ++T+ +A+R+YE + + G ++ID Sbjct: 117 RFAYEILPYLSQLEANFTKYRLSNIVQLTSSHAVRIYELIVSW-ATQGQYYKEIEIDAFR 175 Query: 190 ERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 E L + Y++ + + R + +IN T L +K R I F Sbjct: 176 ELLGLGEKYKQNSELKARVTIPAMQQINESTDFELDISFRKSKRTFKWIQLRFNQ 230 >UniRef50_A9VVF2 Initiator RepB protein n=14 Tax=Bacillus cereus group RepID=A9VVF2_BACWK Length = 404 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 98/231 (42%), Gaps = 14/231 (6%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 K + + +SN L EA L+ ++++L I +D + + + + ++ G Sbjct: 10 KENNIVSKSNTLIEANSRLNLVEQKILLCLASNIEPNDRDFKTY----TFPIKHFHDLLG 65 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 L + ++ + K K + E W ++ ++G + + Sbjct: 66 LNGSTKYSELSKITKELLSKVIEIRTGE-------VLIQVSWLSSAIYNRNKGTIDMRFD 118 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P L PF + L ++FT +RL+ ++ + YA+R+YE L QY ++ ++ + Sbjct: 119 PLLKPFLLELSSKFTSYRLANVVKLKSTYAIRIYELLKQYEDLK---ERTISLENLRYYL 175 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 Y +F++R L+ E++ +T + + E K GR+ I F R Sbjct: 176 DAMDIYPNYANFKQRVLKPSQKELDQKTDISFEFEEIKLGRKVQKIKFIIR 226 >UniRef50_Q6LPZ0 Hypothetical replication initiation protein n=1 Tax=Photobacterium profundum RepID=Q6LPZ0_PHOPR Length = 246 Score = 193 bits (492), Expect = 4e-48, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 136/243 (55%), Gaps = 8/243 (3%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI-CEIHVAKYAEI 70 +K+ I Q+N LT AAY+L+R++KR++Y+ +D I E +I+ YA I Sbjct: 6 KKSDIIIRQANALTSAAYNLTRNEKRLVYIALDDIINKRIQCNEFGQYPVKINHIDYASI 65 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 F S +DI + S KEV+FYRP+ED G ++ W KR++ S G +V Sbjct: 66 FEDDSENIGQDILKLTASLNKKEVIFYRPDEDIGKN-ALDAISWTTKRSYRASLGATTVF 124 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 N L+ + FT+F + E + +PYAMRLYESL Q+ V+L++DW+IE Sbjct: 125 FNAELVNIITKVDTNFTRFLMGEAGRLNSPYAMRLYESLQQWPDQQS---VTLEVDWMIE 181 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIE---KKKGRQTTHIVFSFRDITS 247 RY+LP+SY+RM DFRRRFL+ V EIN T + + Y E K + + I F++ + T Sbjct: 182 RYELPESYRRMSDFRRRFLKPAVKEINEHTSIMIDYEEVADKIRSNRIAAITFNYSNRTE 241 Query: 248 MTT 250 T Sbjct: 242 KAT 244 >UniRef50_B0VVD6 Putative replication protein n=1 Tax=Acinetobacter baumannii SDF RepID=B0VVD6_ACIBS Length = 339 Score = 193 bits (492), Expect = 4e-48, Method: Composition-based stats. Identities = 49/257 (19%), Positives = 111/257 (43%), Gaps = 21/257 (8%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 +I + + +V++N++ EA+Y LS +++R++ + I K + + + Sbjct: 6 LITRNTKMSKLLVVKANNIIEASYQLSLNEQRLILAAIACIPKGEEVTD--NTGYCVTRE 63 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFI--------- 116 + E+ G+ AS++IR+A + + + + Sbjct: 64 SFIEL-GVNPKTASREIREACDRLFNRVITITTEAGTFKTRWVQDIMKYNSDWALANPEF 122 Query: 117 ------KRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLC 170 ++ L ++ + ++PF L + FTQ+ L + +++ Y++R YE + Sbjct: 123 IQEVAGSDPYAEDYILAAIRFSKSVLPFISNLSSNFTQYFLQDIAGVSSGYSVRFYELMM 182 Query: 171 QYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK 230 Q++ +G +++D + L Y D +R + ++E+N ++P+ + Y K Sbjct: 183 QFK---STGYRKIRLDDLRNMLDLNNKYPLTADLKRWVIDTAIDELNEKSPITIKYKLLK 239 Query: 231 KGRQTTHIVFSFRDITS 247 GR+ THI F+ S Sbjct: 240 TGRKFTHIELKFKQKLS 256 >UniRef50_A8UX05 Replication initiator protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UX05_9AQUI Length = 333 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 12/229 (5%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 ++ +SN L EA Y L+ ++ R++ ++ I D + I V I L Sbjct: 12 DNKVTKSNKLIEAKYRLTLNEVRLILAYISLISPVDNGFP----VARIKVKDLKGILELN 67 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 + + + L+ + + + EE+ G+ W + ++ +G + ++ Sbjct: 68 GESMYEALSRTLEKLRSRVIKIQKLEEN-----GFIITGWIDRAEYNGRKGELEIVLSKD 122 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 L P+ + L+ FT ++L + + YA+R+YE L QY K G KID + E Sbjct: 123 LEPYLLHLRKNFTTYQLRYVLRLRSVYAIRIYELLKQYEKV---GKRVFKIDELKELLGA 179 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 Y+ F+ + L E+ +T + S+ E K+G++ + + Sbjct: 180 EDKYRLYGHFKNKVLLKAQRELEEKTDISFSFREIKQGKKVVAVELIIK 228 >UniRef50_Q2B8G7 Replication initiator protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8G7_9BACI Length = 422 Score = 190 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 108/234 (46%), Gaps = 16/234 (6%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 + + I +SN + E+ Y L+ ++R+L + +++ SD + + + V + Sbjct: 11 EIDSKDWITKSNTIIESQYKLTLQEQRILLITASKVQPSDEDFKPY----KFRVTDLVDK 66 Query: 71 FGLTSAEA-SKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSV 129 G++S + I+ +K GK V F + + W + ++ G + Sbjct: 67 IGISSQTSMYSYIKSVVKGLQGKTVEFKKDNKTI-------VANWLVTSIYAEQEGTVIL 119 Query: 130 HINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWII 189 NP L FF+ L+ RFT ++L ++ + Y++R+YE L QY + + ID + Sbjct: 120 KFNPDLKEFFLQLKERFTSYQLENVIQLNSVYSIRIYELLKQY---ESLRKRTFTIDELR 176 Query: 190 ERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 E+ + + Y++ + R + E+ +T + ++ E KKGR+ T I+F Sbjct: 177 EKLGIEKSKYKQYGHLKDRVINAAKQELAEKTDISFTFQEVKKGRKVTGIIFQI 230 >UniRef50_Q0HPE2 Initiator RepB protein n=2 Tax=Gammaproteobacteria RepID=Q0HPE2_SHESR Length = 230 Score = 190 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 103/231 (44%), Gaps = 11/231 (4%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + +SN L +A+Y L+ ++++ + +I + E ++ +++E+ G+ Sbjct: 7 VTKSNLLIDASYRLNVQAQKLVLACLSKIDSRPDS--EPKKEIKLTAIEFSELMGIDIKN 64 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A +++ +A + ++ E+ E + K G ++ + ++ Sbjct: 65 AHRELYKAADALFKSSILLRNEHEET------ELYWIQKKVKKLRGEGAVTLVWSDEVLR 118 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 + L++ FT ++L + + +++RLYE L ++ + + +D L + Sbjct: 119 YICQLKSHFTSYKLRNIASLQSGHSIRLYELLMRFNATNS---RVIALDDFRSALGLEEK 175 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 Y + + + ++ V E+N R+ + ++Y KKGR T + F+F+ + Sbjct: 176 YPQFKELNKFVIKFAVEELNQRSDLVITYETLKKGRTVTALAFTFKQNKQL 226 >UniRef50_Q629K5 Replication protein n=2 Tax=Haemophilus somnus 129PT RepID=Q629K5_HAES1 Length = 323 Score = 190 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 99/232 (42%), Gaps = 17/232 (7%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N I +S+ + EA Y L+ ++R++ L + ++ + + ++V YAE F L Sbjct: 2 NDLIIRKSHPIVEAGYKLTIAEQRIILLSLAKLDNRNIE----NSNVTLYVKDYAEAFNL 57 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWF-IKRAHSPSRGLYSVHIN 132 + A ++ +A K + ++ +E F W + + G S + Sbjct: 58 SETSAYSELERASKRLYDRSIILKGEDETTE-------FRWIESRTKYHKGEGRISFQFS 110 Query: 133 PYLIPFFIGLQNR--FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 ++P+ L R FTQ+ L + Y++R+YE K G ++ID + Sbjct: 111 RRVMPYLFELDKRLGFTQYELLSVSGFKSAYSIRMYELAI---KLLGMRNQQVEIDELRR 167 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 QL YQ +R + + NEIN ++ + L+ K+GR+ + F Sbjct: 168 ILQLDDKYQEFKRLKRDVINLACNEINEKSDLLLNIEPVKRGRKIIALEFQI 219 >UniRef50_A6DT85 Replication initiator protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT85_9BACT Length = 477 Score = 189 bits (480), Expect = 8e-47, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 98/235 (41%), Gaps = 16/235 (6%) Query: 11 KRKNSPRIVQSNDLTEAA--YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYA 68 K + + + NDL EA L+ +++++ V I D +E+ + + Sbjct: 6 KSRKDRYVAKGNDLVEAKRSMHLTTRERKLVAYMVSCISPYDDDFKEY----RFPIEDFI 61 Query: 69 EIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 + F + A K+ + K E + W + + + +++ Sbjct: 62 QFFSIKDKNAPKEYERIAHGIMSKPFTVENDVERF-------TATWLSEAKYHKKQKIFT 114 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 P L + I L+ +T++++ + N Y+ +YE L QY + G S+ ++ + Sbjct: 115 FRFTPSLKRYLIQLKKFYTRYKMINLIHMENCYSESVYELLKQY---ETIGKRSVSMEKM 171 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 L + Y +FR + L+ V EIN + + ++Y E K+GR+ + + F + Sbjct: 172 RTMLGLERKYPLYSNFRVKVLEPAVEEINKYSDINIAYQEVKEGRKISGLNFEIK 226 >UniRef50_UPI0001AF0368 DNA replication protein n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF0368 Length = 373 Score = 189 bits (480), Expect = 9e-47, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 107/242 (44%), Gaps = 13/242 (5%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + + ++N L A+Y+L ++R++ L + R + L + I EI + YA+ F T Sbjct: 7 NSDVYKANALINASYALDTAEQRIILLAILVSRNKNADLTA-ETIIEIPASLYAQKFNTT 65 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 + A K +++A + + + + W + ++ L ++ + P Sbjct: 66 VSAAYKTLKEAEDTLFERRFSY---TTMRNGKIEVVRSRWVSRVSYVKDDALLTITLAPD 122 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ- 193 +IP L+ FT++ + +++T+ Y +RLYE + ++ D + + Sbjct: 123 VIPLVTKLEGTFTKYAIDNLRDVTSKYGIRLYELVASWKNSDIRKTPVYDFEDFRAKMGL 182 Query: 194 LPQSYQ--------RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 LP Y+ M +F +R L+ +++INS T + ++ + K GR T I F Sbjct: 183 LPHEYRDKKNPESTDMTNFNKRVLKPAIDQINSFTDLFITEKKIKTGRNITGIYFEVSLK 242 Query: 246 TS 247 T Sbjct: 243 TD 244 >UniRef50_B5EWH3 Plasmid replication protein n=2 Tax=Enterobacteriaceae RepID=B5EWH3_SALA4 Length = 354 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 12/238 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 ++ I Q N L E +Y ++ + R+L+L + +I Q + +Y+ ++ L Sbjct: 20 DNKVITQGNQLIEGSYDINLAEIRLLWLALSKI--DSKNPQPEGAEIVLTAPEYSAMYDL 77 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL-YSVHIN 132 A ++ ++ + K + Y E + WF + ++G ++ + Sbjct: 78 ELANSAHQLQSVSLTLGSKPIYTYEWNERKKRVDAVARY-WFSAITYGANKGADITLSFS 136 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV--------SLK 184 P + PF L+N FTQ + ++ P+A RLY L +YRK D + Sbjct: 137 PKIAPFLYDLKNEFTQMNVFAMAKLDTPFAFRLYSWLSRYRKLDKYKNPKTGVISTEKIS 196 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 IDW+ +R L Y +FR R L V+ IN T + + Y GR+ TH++F++ Sbjct: 197 IDWMKDRSGLTGKYADFKNFRVRVLNPAVDAINRTTDLTVRYETVTTGRKVTHLIFNY 254 >UniRef50_B1FHX4 Initiator RepB protein n=2 Tax=Burkholderia ambifaria RepID=B1FHX4_9BURK Length = 283 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 22/245 (8%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF------ 71 + S L A L+ ++KR++ + I G + V A+ F Sbjct: 42 VAMSRALVNAQQGLTLNEKRVMMAALRCIDSKKSPYLHSKGNGYVSVRVRADEFAALAAL 101 Query: 72 ----GLTSAEA-SKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 G A A + +++ S +++ + D W K + G Sbjct: 102 APRSGEKQATAAYEGLKEGCASLQKRQLTY-------MDGPRKVVLNWVWKAIYHEREGW 154 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID 186 + +P L P LQ RF ++L + + + Y+ RL E L + R G + + ++ Sbjct: 155 AEISFSPDLTPHIFMLQRRFVSYQLEFARGLQSLYSWRLLELLMRERD---RGRLLITLE 211 Query: 187 WIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 ++P +Y R D +RR ++ VNE+N++ + +S+ K GR + F F Sbjct: 212 DFRSVLEIPSTY-RFADIKRRVIETAVNELNAKADLVVSWTPVKLGRAVNSLDFQFVQNP 270 Query: 247 SMTTG 251 Sbjct: 271 QSRLA 275 >UniRef50_Q52204 Putative plasmid replication protein n=2 Tax=plasmids RepID=Q52204_9ZZZZ Length = 294 Score = 184 bits (467), Expect = 3e-45, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 18/236 (7%) Query: 15 SPRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 ++V++N++ + A L +++ V +++ D E+ + +Y ++ G+ Sbjct: 38 DYKVVKANEIIQRAQCDLGLLEQKTFCYAVSKVKPDDIAGTEY----TFSINEYCDVCGI 93 Query: 74 TSAEAS--KDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 + ++++ ALK K FY +E+ Y W K SP G + Sbjct: 94 NRNDGRTIENVKSALKRLRDKS--FYLQDENGN----YVLIGWLGKARVSPKSGKIKIKF 147 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 + + + GL N +TQ+ L + + Y++RLYE L Y +I+ + + Sbjct: 148 DEDMQKYLTGLYNNYTQYSLLCVLPMKSAYSIRLYELLKSYAGLHRK---EFEIESLKAK 204 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 P Y + RR+ L V V EIN T + +S+ KGR+ I F + S Sbjct: 205 LCAP--YSDFYEVRRKVLDVAVREINLYTDLEVSWQPINKGRKVVKIHFDIKQRNS 258 >UniRef50_Q3IEM2 Putative RepA n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IEM2_PSEHT Length = 320 Score = 182 bits (463), Expect = 7e-45, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 18/239 (7%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 KNSP+IV +N L A YSL +++R++ L + +I + + G I+ +YA+ F Sbjct: 3 SKNSPKIVFANKLLHAGYSLEINEQRLINLALSKINSK----KSNPGQIVIYPTEYAKCF 58 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR---GLYS 128 GL + + + A++S K V D+ S PW + + + Sbjct: 59 GLRKSSVYEQLSSAVESLKDKFVSI------LDDKGEAVSIPWVSNATYEKLKNQGSFIT 112 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR-----KPDGSGIVSL 183 + + + P+ ++ FT+ T ++ + + RLY L + R K G +V+ Sbjct: 113 LEFSKEIEPYIFNIEKNFTRLFFHNTVKLNSLASFRLYALLNRVRNYHNYKRKGEVVVNF 172 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 ++ + ++ L +SY DF+ R L + +IN+ T + +++ KK G T I F++ Sbjct: 173 QLPEMKQKLFLSESYGAWRDFKNRVLLPAIEKINAHTDICVTFKPKKMGNCITAIEFAY 231 >UniRef50_A1U7R0 Initiator RepB protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7R0_MARAV Length = 409 Score = 180 bits (458), Expect = 3e-44, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 107/254 (42%), Gaps = 20/254 (7%) Query: 3 ETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 + +I + ++ +SN L EA Y LS + ++L + + +IRK + E Sbjct: 10 QLDLIVVDENTTKLKVAKSNALVEAQYELSGKEHKLLLVAMAEIRKDQTSFYEQ----VF 65 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 V AE+ + + A ++ + K+V + G+E + W K Sbjct: 66 SVQDLAELLDFSKSSAYSELDRLSTGLMRKQVEIRNDQTG-----GWEKYQWVTKA--YC 118 Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG----- 177 G + + + L PF +GL RFT + LS ++ + YA+RLYE L Q+ + Sbjct: 119 RNGQFGIRFSEELKPFLLGLVGRFTLYELSRVLKMNSNYAIRLYELLKQFERFGKRTFSL 178 Query: 178 --SGIVSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPM-RLSYIEKKKGR 233 + + P+SY R + +R L ++++ T +++ + R Sbjct: 179 DPKMTSKEDWESFPKLMGYNPKSYARFSNLNQRVLSPAISQVEQYTEFRSVNFSVIRYNR 238 Query: 234 QTTHIVFSFRDITS 247 + +VFS++ + + Sbjct: 239 KPVALVFSWKTVDT 252 >UniRef50_Q2A086 Putative replication protein n=1 Tax=Sodalis phage phiSG1 RepID=Q2A086_9VIRU Length = 329 Score = 180 bits (456), Expect = 5e-44, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 17/248 (6%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 M+ + H+K IVQ NDL A Y L D R+L L + ++ + + G+ Sbjct: 1 MSHRPLALHEKESKQQVIVQHNDLITARYILGIDGLRLLLLLLSKVNQRGD----NPGLI 56 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 +I + ++ E FG+ + + I A+ + + Y +E K W + + Sbjct: 57 KITIREFQEAFGIPNKNVYRCINNAISALWEGSIEIYVQKERM---KALRISRWITDQTY 113 Query: 121 SPSRG---LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR---- 173 G + + +NP L PF + FT + I + + RLY L + Sbjct: 114 IKEDGKHVVIEITLNPKLDPFLFNMATNFTWTNFEFIQNIRSVTSFRLYMYLISCKNHPL 173 Query: 174 -KPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKG 232 K +G VS+ ID + + R D +++ + + +IN+ + + + K+G Sbjct: 174 CKRNGFFEVSILIDDFKTLF--STNCARFFDLKKKSIDPAIQDINTYSNISVHCKTVKEG 231 Query: 233 RQTTHIVF 240 R + F Sbjct: 232 RSVVALRF 239 >UniRef50_Q0SW56 Initiator RepB protein family n=4 Tax=Clostridium perfringens RepID=Q0SW56_CLOPS Length = 320 Score = 178 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 91/234 (38%), Gaps = 13/234 (5%) Query: 14 NSPRIVQSNDLT-EAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 + + +SN ++Y LS ++++++ ++ +D + + ++ + E+ G Sbjct: 3 KNYLVTKSNYFIMNSSYDLSLEEQKIILTLASMVQPNDEEFKPYI----FKISDFMELLG 58 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + +I + K K + W + G+ + + Sbjct: 59 VNTKTKYTEIPKITKDLMKKVFEIEEDD-------VIIQTAWLSSATYKKGSGIVELEFS 111 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P L P+ + L + FTQ++L+ + + Y+ R+YE L + V +KI + Sbjct: 112 PKLKPYMLKLNSMFTQYKLANILSMKSKYSPRIYEILK-CNEFKKQNFVEIKITELRRLL 170 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 + Y DF+R + E+ + + + E K GR+ T I F Sbjct: 171 KAENIYPLYSDFKRYIIIRTKKELKKLSDIWFEFEEIKTGRKVTSIRFYIYSNN 224 >UniRef50_A7GJQ6 RepB family protein n=1 Tax=Clostridium botulinum F str. Langeland RepID=A7GJQ6_CLOBL Length = 337 Score = 176 bits (447), Expect = 6e-43, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 109/239 (45%), Gaps = 16/239 (6%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 + NH + + I QSN L EA+Y+L+ +++++ L I+K D +E+ + Sbjct: 1 MKNHIESAKNNWIYQSNKLIEASYTLTVIEQKLIRLLASMIKKDDTDFKEY----KFKTK 56 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 +I + + +DI + + +E + W + +G Sbjct: 57 DLIKILNTSDSRFYRDIDNITDLLMQRIIKIKDISNGE-----FEKYHWVDVAKY--KKG 109 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 + + IN L PF++ L +T+++ + + Y+ R+YE L QY K G + I Sbjct: 110 VLILKINKDLKPFYLSLD-WYTKYQFKNIMQFKSTYSFRMYELLKQYEKI---GHRIITI 165 Query: 186 DWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 + I + + Y + + +++ ++V +NEIN+ T + + Y E K+ R+ T I F + Sbjct: 166 NEIRSMLDIKKNKYPKYANLKQKVIKVSINEINTNTDLFIDYEEVKESRKITSIKFYIK 224 >UniRef50_D2QW11 Initiator RepB protein n=2 Tax=Spirosoma linguale DSM 74 RepID=D2QW11_9SPHI Length = 331 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 94/236 (39%), Gaps = 21/236 (8%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 S I Q N +T A Y S Q + + + +RK DG+ EI V + + G Sbjct: 14 SQSVSIRQHNAITTARYEYSELQLDLFFYLLSILRKDKT-----DGVYEIVVKDLSTLTG 68 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 +++A + + P K YE F + + G V ++ Sbjct: 69 --KEYKYGYLKKATEEMGSRMFEVSTP-------KSYEQLWMFQRVKYVIGEGRIEVRLS 119 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 + P+ L++ FT F L + + YA RLY Q+ + + KI + + Sbjct: 120 DDIKPYLFDLKDNFTSFELYAALRLGSKYAKRLYTLCSQWNDKGETPV--YKIPELKKML 177 Query: 193 QL-----PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 L + Y+++ +F+R L +IN T +++ Y K+GR + F+ + Sbjct: 178 SLLDDKGNEQYKQIGEFKRFVLDEAKKQINEHTDLQIDYTLYKRGRSFQSVSFTIK 233 >UniRef50_Q1PHH6 PCZ2.1 n=1 Tax=Planococcus sp. ZOYM RepID=Q1PHH6_9BACL Length = 391 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 108/238 (45%), Gaps = 16/238 (6%) Query: 14 NSPRIVQSNDLTEAAYS--LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + + QSN L +A Y LS Q++++ V +I+ D + I E+ + + E+ Sbjct: 3 KNHLVTQSNSLVDARYHEPLSARQQKIVLSVVSKIQIDDEDFK----IYEVRIRDFHEML 58 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 GL ++++ + K + R + + WF + G Sbjct: 59 GLEGEPKYTEMKKITEELLKKSLEITREKGR------FLQVNWFSSIEYFEHEGRIEFSF 112 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 +P L P+ + L+ +T +RLS +++ ++RLYE + ++ + G + I+ + +R Sbjct: 113 DPKLKPYLLDLKKAYTSYRLSNILSLSSASSIRLYELMKKW---EYLGKWEITIEKLKDR 169 Query: 192 YQLP-QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 + QSY +F+ R + +NE+N +T +++S+ E K GR+ F+ R Sbjct: 170 LGIKQQSYNVYGNFKNRIIVPSINELNEKTDIQISFKEIKTGRKVVGFEFTIRHSPEK 227 >UniRef50_D0U573 Replication initiation protein RepB-like protein n=1 Tax=Psychrobacter sp. J466 RepID=D0U573_9GAMM Length = 309 Score = 173 bits (438), Expect = 6e-42, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 107/244 (43%), Gaps = 14/244 (5%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIR-KSDGTLQEHDGICEIHVAKYAEIFGL 73 + +VQSN+L AAY+++ +K++L + +I + D + V + A+IF Sbjct: 3 NNLVVQSNELVLAAYTMTTKEKQLLLTCISRIDSRPDAPNITKQTKFTVTVEEVAKIFYT 62 Query: 74 TS--AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 S A +D+ QA +EV+ + + + P+ ++ Sbjct: 63 DSTKKNAFRDLEQASNRLFDREVLIALEDNKT------LRTRFVSGVLYDPNGEQITITF 116 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 ++P+ L+ FT++RL E E+++ ++MRLYE + + S+ +D Sbjct: 117 AEDVLPYLTQLKANFTKYRLMEVSELSSIHSMRLYELIVCW-VGQYQYTKSMDLDDFRYV 175 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR----QTTHIVFSFRDITS 247 + Y++ R R ++ ++E+N T +++ KK R + + F + + Sbjct: 176 MGIKGKYKQFGQLRERVIETAIDEVNESTNYKITVEYHKKSRGKGYEGLTLKFHRKTLDK 235 Query: 248 MTTG 251 +T+ Sbjct: 236 LTSA 239 >UniRef50_C8PV51 Replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV51_9GAMM Length = 319 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 95/230 (41%), Gaps = 6/230 (2%) Query: 20 QSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEAS 79 N L A +L +++R++ +RK + + V + + +G+ S Sbjct: 1 MQNRLLNAISNLELNERRLIMFLSPLVRKE-VDKNPYQSTFIVRVKDFQDEYGIKSKAYY 59 Query: 80 KDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFF 139 +++ S K F+ + K W K + ++G + ++ +I Sbjct: 60 QELENICNSLQHKTYEFWNFSAN-KKYKSKVKVTWITKGDYKDNQGEVHIDLHNDVIEML 118 Query: 140 IGLQN--RFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 FT+++ ++ Y + L+E + + I+++ E++ + Sbjct: 119 TVFDKTNPFTKYQRQMIVKL-GCYGIILFELISSCLHQKNKTK-AYTIEYLREKFNCIDT 176 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 Y + +F+R L + +I TP+R++Y + KKGR T IVF+F ++ Sbjct: 177 YPVISEFKRNVLDKAIMDIEKHTPLRITYTQVKKGRVVTEIVFAFENLDD 226 >UniRef50_Q2A6M6 Replication protein B n=3 Tax=Pasteurellaceae RepID=Q2A6M6_PASTR Length = 372 Score = 170 bits (430), Expect = 6e-41, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 96/232 (41%), Gaps = 15/232 (6%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF-GLTS 75 + QSN L E +S ++R++Y + +I ++ + V +A+ F + S Sbjct: 28 LVQQSNALIETTQKMSLVERRLMYHVLSRINP-----KKPQQEYVLRVEDFAQDFPQMGS 82 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 ++ A+ S + + + + F ++ + G + + Sbjct: 83 GTIYNQLKDAVVSLFKRSIQLLT------ERGTTKIFYLLQEQEYKDGEGYLRMKFSDST 136 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 +P L+ +FT L K + + ++++LYE L QY+ G + ++ + + Sbjct: 137 MPLIFDLKEKFTTMVLENFKFLDSVHSLKLYELLYQYK---SQGWREITVEDLRFFFGCE 193 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 +Y F+++ ++ + EI+ ++ + + + GR T + F F + T Sbjct: 194 DTYPDFKLFKQKVIEPAMKEISEKSDLLVQAEYLRTGRFVTSVKFIFVEKTD 245 >UniRef50_B5Z4W0 Plasmid replication protein n=1 Tax=Escherichia coli O157:H7 str. EC4115 RepID=B5Z4W0_ECO5E Length = 336 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 98/235 (41%), Gaps = 14/235 (5%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 I QSN +T+ Y ++ D+ R+L L + +I + D + I ++ E+F + Sbjct: 13 LIFQSNAITDGVYKITLDEFRLLNLAISKISRHDK----PEKRIRITTKEFVEVFNIKDK 68 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS---PSRGLYSVHINP 133 + GK + Y ++D+G + W + + + + Sbjct: 69 NVKNRLSAIADGLLGKTIDTYSFDQDSGKKTKRRRL-WLSEVEYDIEGEENVFLEIVFST 127 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR------KPDGSGIVSLKIDW 187 + L++ FT F L T+P++ R+Y LC+YR K + ++ + Sbjct: 128 EISDLLFQLKDNFTLFALRAISAFTSPHSFRIYAWLCKYRNMYNYRKGELITTDTISVYD 187 Query: 188 IIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 L +SY+ +++ ++ +NEINS T + + E K R+ I FSF Sbjct: 188 FKVMLGLEKSYEEYKFLKQKVIERSINEINSSTDISVVLNEYKASRKVIAISFSF 242 >UniRef50_Q3HYC5 Rep n=1 Tax=Actinobacillus pleuropneumoniae RepID=Q3HYC5_ACTPL Length = 337 Score = 166 bits (420), Expect = 8e-40, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 104/245 (42%), Gaps = 16/245 (6%) Query: 10 KKRKNSPRIVQSNDLTEAAY--SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY 67 + + P +SN+L +A + L+ + R+ L V ++ + E V ++ Sbjct: 2 SENTSKPISTKSNNLIDAGFFKKLNGMEMRIFNLAVSRLNPMRTL--NQNRRFEFSVKEF 59 Query: 68 AEIFG---LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 E F A ++++ A+ + V D D +R+++ + Sbjct: 60 LE-FNSGITDQMHAYENVKNAVLNLGKIWVEV-----DPIDGYDKTEVSLLTRRSYTKGK 113 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G + + + ++P+ ++N +T L + + Y+++LYE L ++ G VS+K Sbjct: 114 GSFMIEFHEDVMPYLAEIKNNYTSMLLDTFGSLKSEYSLKLYEILSRW---AFKGFVSIK 170 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 +D + + Y R +F +R L V EIN++T + +S + GR + + F D Sbjct: 171 LDELKILLDVVGMYDRYNNFSQRVLTPAVKEINAKTNLIVSVKPIRTGRAISELEFKIFD 230 Query: 245 ITSMT 249 + Sbjct: 231 KSKAI 235 >UniRef50_D2QW27 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QW27_9SPHI Length = 308 Score = 166 bits (420), Expect = 9e-40, Method: Composition-based stats. Identities = 53/240 (22%), Positives = 94/240 (39%), Gaps = 22/240 (9%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 + I Q N LT A Y ++ +K +LY+ V +RK D + ++ V + AE+ G Sbjct: 2 SKNIEIWQDNVLTTARYEMTEAEKNLLYMVVASVRKDD----PPTKMYQVSVKEMAEVTG 57 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + +QA + + D + + G+ + ++ Sbjct: 58 -QAELKFETYKQATRKLMSRVFETTLTNGD------VLQASFIASALYRKGTGIIQIELS 110 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS-----LKIDW 187 + PF++ L RFT+ +L + + YA R+YE LC Y+ + W Sbjct: 111 QMVRPFYVDLNTRFTKMQLVAAISLNSTYAKRIYELLCMYKNMKDKTFRRGLTELKTMLW 170 Query: 188 IIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK-----KKGRQ-TTHIVFS 241 II+ SY F + L+V EIN T + +Y +GR+ + F Sbjct: 171 IIDPKTGRDSYTNWTRFEKAVLEVAAKEINGHTDITFNYKPIYGDRPGRGRKPVVEVEFE 230 >UniRef50_UPI00004A2E9C replication protein n=1 Tax=Moraxella bovis Epp63 RepID=UPI00004A2E9C Length = 533 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 97/239 (40%), Gaps = 11/239 (4%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 I+ N L A L+ +++R++ + I + ++ + ++V + +G+ Sbjct: 119 EDLIIIQNRLLHAISHLTLNERRLILF-LSPIVRKQVEKNPNNRVFYVYVQDFVNEYGIK 177 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 S + ++ + S K F+ ++ +KG W + + + V ++ Sbjct: 178 SKKYYGELEKIADSIVEKAFFFWYKTQNGKAKKG---VSWVSECDYIENEAKIKVKLDDT 234 Query: 135 LIPFFIGLQN---RF-TQFRLSETKEITNPYAMRLYES-LCQYRKP-DGSGIVSLKIDWI 188 +I F TQ++ + Y + + E L + + I+ + Sbjct: 235 VIEMLTVFDKTTGNFWTQYQKEWIINL-GTYGIIMLELVLSSFDNSFEKDKKGKYSIEHL 293 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 E++ ++Y R DF+ ++ + EI+ TP+R+SY K GR + FS+ D + Sbjct: 294 REKFDCIETYPRFSDFKLYVIEKSIKEIHKHTPIRISYQVHKFGRSVQGVSFSYIDTSE 352 >UniRef50_A8V5F5 Replication initiator protein (Fragment) n=2 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V5F5_9AQUI Length = 225 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 11/220 (5%) Query: 4 TAVINHKKRKNSPRI-VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 + K N I NDL +A + LS ++ R++ + I+ D +++ +I Sbjct: 15 VEEMKEVKEINKNAIATIHNDLIQARHKLSLEEIRLMDTIISFIQPEDKDFKKY----KI 70 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 VA + ++FG + +++A++ K + + E ++ ++ F + + Sbjct: 71 PVAVFKDLFGTQRKDIYDVVKRAVEGLLSKPIKIEKKNERG--KRYFKMFNFIRYGEYEE 128 Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 G + V I P P+ + L+ F++ + T + + YA+RLYE L QY + +G Sbjct: 129 GAGCFYVSIAPEFKPYLLQLKEFFSKIPIKYTYVLNSRYAIRLYELLKQY---ENTGFRV 185 Query: 183 LKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTP 221 + + E + P Y R +F +R L+ V EIN +T Sbjct: 186 DYLPELREMLGVEPNEYIRFDNFEKRVLKQAVKEINEKTD 225 >UniRef50_B9VWK0 Putative replication protein n=1 Tax=Pseudomonas sp. CG21 RepID=B9VWK0_9PSED Length = 311 Score = 163 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 26/232 (11%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 I+Q N +T Y S + ++++ + + + IH++ +I + Sbjct: 9 DKLIIQHNAITSGRYDFSACELDIMFMILANLNPGED-------TYSIHISDIEDI--TS 59 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A + +++A + + E + F + G V + Sbjct: 60 RAWNYQQLKEATELMLSRVYQIETAE-------AFTQLVLFQYFDYMKGTGTVKVRLTEK 112 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 +P+F L++ FT +L T+ YA R+Y CQYR G ID E L Sbjct: 113 AVPYFFDLKSNFTSLQLKAILSCTSKYAKRIYALACQYR---VMGTKRFTIDEFKEMLYL 169 Query: 195 -------PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 P+ ++R+ ++ L V +IN T + Y KK+GR I+ Sbjct: 170 KDPKGKAPEQFERISSLKKDVLDVAKKQINEHTDIHFDYELKKRGRSFHWII 221 >UniRef50_C9MTU8 Initiator RepB protein n=2 Tax=Bacteroidales RepID=C9MTU8_9BACT Length = 325 Score = 163 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 100/247 (40%), Gaps = 22/247 (8%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY----- 67 K + +QS T A Y S +KR++Y V+ + + D + +I + Sbjct: 6 KGNELAIQSYIFTTAKYDFSAYEKRIMYRLVELAQDEIKGIMIRDNMHKIEPTLFGREIT 65 Query: 68 ---AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 A+I + ++A KS A K V + DEK ++ + + Sbjct: 66 MPVADILRDEKDQNYTIAKKAFKSLAQKGVEY-------EDEKIWQYTSIISSPKINKIK 118 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G + + + + ++ L + Y+MR+YE + ++P + Sbjct: 119 GSVVFQVADDIWRCLLDFTKGYRKYELITAMGFKSVYSMRMYELMSGQKRP-----LEFT 173 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF--SF 242 + + +R++L Y ++ DF+R L + E++ +P +YIE K+GR+ F +F Sbjct: 174 FEDLKQRFKLKDKYSKVNDFKRWVLDIAKKELDESSPYSFNYIEVKEGRRVVSFKFFPTF 233 Query: 243 RDITSMT 249 + T Sbjct: 234 KPDNKDT 240 >UniRef50_C8Q107 Replication protein n=2 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q107_9GAMM Length = 455 Score = 163 bits (412), Expect = 7e-39, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 102/239 (42%), Gaps = 7/239 (2%) Query: 10 KKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAE 69 K IV N L A L++D++R + +RK+ + H + +A+ Sbjct: 127 SKIYGENWIVLQNRLLNAISDLNQDERRFVIFLSPLVRKA-VDINPHQRNFTVVAKDFAK 185 Query: 70 IFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSV 129 + + + +++ KS GK VFY A + + W + G+ V Sbjct: 186 EYDIAEKHVYEKLKKISKSIHGK--VFYYWNFRANKKANLKGVSWIGTAEYKDREGMVEV 243 Query: 130 HINPYLIPFFIGLQN--RFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW 187 + +I FT++ + + + + L+E + S +I++ Sbjct: 244 SLLDEVIQMLTVFDKSNPFTKYERKHIANLGS-HGIILFELISSCMHQLFKSK-SYEIEY 301 Query: 188 IIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 + E++ +Y + +F+R + + +I S TP++++Y +KK G++ T ++FSF D + Sbjct: 302 LREKFNCRDTYLPIAEFKRNVIDKAIKDIESNTPLKINYEQKKTGKKVTELLFSFYDSS 360 >UniRef50_D2U1L9 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2U1L9_9ENTR Length = 212 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 86/209 (41%), Gaps = 12/209 (5%) Query: 45 QIRKSDGTLQEHDGICEIHVAKYAEIF-GLTSAEASKDIRQALKSFAGKEVVFYRPEEDA 103 I K + + + +I ++ F + A + +++A+ A + + Y + Sbjct: 2 CIGKINPIAENPERTFQITANEFYMSFPDMGRKHAERRLQEAIDRLAERWIRIYWKDNK- 60 Query: 104 GDEKGYESFPWFI-KRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYA 162 E W K + G + + Y+IP+ L ++FT+ + ++ + Y+ Sbjct: 61 ------EEIRWIQRKAKYFTGEGKIEISFSDYIIPYLTQLHDQFTKIVVKNVSKLKSTYS 114 Query: 163 MRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPM 222 +R+YE L Q++ G +KID L Y R ++ + EIN+++ + Sbjct: 115 IRVYELLMQFKAI---GDRVIKIDDFRSMLGLDDKYSDFKILNRAVIKPSLKEINAKSDI 171 Query: 223 RLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 +S K+GR+ + F F + + Sbjct: 172 NVSIDLVKQGRKVVALHFHFEEKNKKQSS 200 >UniRef50_Q8ETT4 Replication protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8ETT4_OCEIH Length = 279 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 20/250 (8%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYS--LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIH 63 + KKR N ++ QSNDL EA Y L+ + +++ V +I KS Sbjct: 1 MAEKKKRDNKVQVCQSNDLIEAIYEEGLTATEHKIIRYAVAKINKSPDQFPN----VSFT 56 Query: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 V ++ GL+ +++ + K++ E D G FPWF + + Sbjct: 57 VLEFINAAGLSGNSYHGKVKKIVGELKRKQIRIKPREHDWG-------FPWFKEIIY--K 107 Query: 124 RGLYSVHINPYLIPFFIGLQNR--FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 G+ + N + + I L + +T++ + + +PY +RL+E L QY G Sbjct: 108 NGMVHITFNDLIKSYLIYLSEQEKYTKYAFATIGHMQSPYTIRLFELLQQYAMI---GHR 164 Query: 182 SLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 +K++ + E + Y+ F+ R LQ E+++ + ++ E K R+ I F Sbjct: 165 KIKLEKLKELLGVKGKYKEYGHFKSRILQSVKKELDNINVLTFTFEEIKMVRRVDEIYFD 224 Query: 242 FRDITSMTTG 251 + + T Sbjct: 225 IKINDDLNTA 234 >UniRef50_B1BR22 Initiator RepB protein family n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BR22_CLOPE Length = 443 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 12/232 (5%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 K + I QSN L + YSLS + ++++ + ++ D +E E + ++I Sbjct: 4 KNCKNYIITQSNKLAYSKYSLSLNAQKLIMILAAHVQPDDEDFKE----IEFKAIELSKI 59 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 ++ +D+ K K V+F ++ +K + + + G + Sbjct: 60 LDISVDNIYRDLPNITKELVSKLVLFKSTDD--FKDKNFIQGTFLSTAEYRD--GKVLLE 115 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 +P + P+ + L+ F++F+L T + Y+MR Y+ ++ G +++ + E Sbjct: 116 FSPKVKPYLLALKRCFSKFKLESTLNFKSKYSMRFYQL---FKANYIKGEFIIEVSELRE 172 Query: 191 RYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 L +SY + F+ R L V V EIN+ T + +S+ K R+T + F Sbjct: 173 LLNLTQKSYLKYYTFKNRVLNVAVEEINTHTDLNVSFEPIKFKRETVKLKFY 224 >UniRef50_C5H432 Initiator RepB protein family n=1 Tax=Arcobacter butzleri RepID=C5H432_9PROT Length = 326 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 25/249 (10%) Query: 7 INHKKRKNSPRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 I K + + + NDL A YSLS D +++ + + IR D T QE+ I V+ Sbjct: 3 IVEVKDNKNCIVKKHNDLVNKARYSLSEDGIKLVSMLIAMIRTDDETFQEY----HIKVS 58 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 +A++ G S + + + +K + G + + Sbjct: 59 DFAKLKGSNSKNNYESVHKIIKELLSCPIKI-----------GNLQANFIASGEYKEGTA 107 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ-------YRKPDGS 178 I+ L P+ + L+ F ++ L + + + Y +RLYE + Q Y K S Sbjct: 108 TAVFEISQKLKPYLLELKKDFLEYDLKDILSLKSGYVIRLYEMIVQQWREYKHYNKNAKS 167 Query: 179 GIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 I+ + +++P SY R D + R + + +T + Y E K GR + Sbjct: 168 FTFDFDIEEMRTLFEIPDSY-RYNDVK-RIIDKAQQQFKEKTNITFDYEEYKIGRAVKRL 225 Query: 239 VFSFRDITS 247 + R+ Sbjct: 226 KITVRENNK 234 >UniRef50_Q3ZR50 Putative uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei RepID=Q3ZR50_LACPA Length = 246 Score = 160 bits (404), Expect = 5e-38, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 101/233 (43%), Gaps = 17/233 (7%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 K++ P I S + +A + L+ + +++ V ++R+ D + + + + ++ Sbjct: 25 KQQGYPVIKASQLVQKARHQLTAKELKLIDFMVSKVRRDDSGFRP----LQTTIKEINQV 80 Query: 71 FGL-TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSV 129 ++ + ++L S + K F + DE W G ++ Sbjct: 81 MEFGRGTKSLTETSKSLLSLSNKGFWFQK------DEDTITIARWLQTAE-IKKDGSATL 133 Query: 130 HINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWII 189 ++ L P+ + L Q+ LS+ + + Y++ LY+ L +R GS V+ D + Sbjct: 134 ELDEKLAPWLLKLVGSRAQYSLSDIVALRSKYSLMLYQLLMSWR---GSMGVNGTPDEFL 190 Query: 190 ERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 E + + + F R+LQ ++EIN +T +++ Y +K GR + + F Sbjct: 191 EFFG--HTNMKWWQFNGRYLQPAIDEINQKTGIKVHYAARKSGRTISEVEIDF 241 >UniRef50_Q46088 Replicase n=2 Tax=Bacteria RepID=Q46088_CAMHY Length = 337 Score = 160 bits (404), Expect = 5e-38, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 102/241 (42%), Gaps = 15/241 (6%) Query: 10 KKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAE 69 K N + QSN + A Y L+ +++++ L + Q+ D + G +I + + + Sbjct: 7 KNIANRQIMAQSNKVITAKYELTEAEQKIILLAIAQV---DSIKDKKFGTYKITIPELEQ 63 Query: 70 IFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSV 129 G +A +++ + + V + K ++ F W + Sbjct: 64 KIGSKIKQA--QLKETCRRLMQRVVYI-------ENGKNWKMFHWISTAEYIDGENTIKF 114 Query: 130 HINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWII 189 I+ + PF + L+ FT+ L + Y +R Y+ Q + + + ++ + Sbjct: 115 KISDEMKPFLLQLKGNFTKIELENALKFNGKYTLRFYQFCMQMQN-QATKKRTFELSKLY 173 Query: 190 ERYQLPQSY-QRMPDFRRRFLQVCVNEINSRTPMRLSYIE-KKKGRQTTHIVFSFRDITS 247 E QLP+S F+ + ++ +NEIN+++ ++ ++ KK G++ I +F+ Sbjct: 174 EILQLPESLTTSFARFKLKVIEPSINEINTKSDIKANWEISKKIGKKIVEIELNFKSKER 233 Query: 248 M 248 + Sbjct: 234 L 234 >UniRef50_Q97TD7 Replication protein, repA n=1 Tax=Clostridium acetobutylicum RepID=Q97TD7_CLOAB Length = 336 Score = 160 bits (404), Expect = 6e-38, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 14/226 (6%) Query: 23 DLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDI 82 L EA Y+L+ + ++ + ++ I+ + +I + KY +F S +DI Sbjct: 12 KLIEARYNLTSKENDIIDMILNTIKDDGK------HVYKIDIEKYKNLFVSGSTNVYRDI 65 Query: 83 RQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGL 142 ++A K K F ++ AG E F WF ++ G I L + + Sbjct: 66 KKATKDLFTKHNKFIIKDKTAGKE---FYFTWFSMLNYNDKDGSIYFEIGETLKAALLEM 122 Query: 143 QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMP 202 + R + L T + Y+ R+Y L + +G ID + + P SY+ Sbjct: 123 KKR-IYYELQYTLNFRSIYSKRIYYMLKSF---SDTGWRIDNIDELQYKLNCPPSYKNYA 178 Query: 203 DFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 F+ + L EIN + + + K G++ T I F +D ++ Sbjct: 179 VFKNKVLVQAQKEING-SDISFDFTPIKTGKKVTGIKFLIKDSNTV 223 >UniRef50_P18351 Uncharacterized 27.6 kDa protein n=19 Tax=root RepID=YPC1_ECOLX Length = 239 Score = 159 bits (402), Expect = 8e-38, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 119/239 (49%), Gaps = 15/239 (6%) Query: 9 HKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFV------DQIRKSDGTLQ-EHDGICE 61 K ++ QSN+LTEAAY LS KR+L+L + + + D + D + Sbjct: 2 DKLLNKKIKVKQSNELTEAAYYLSLKAKRVLWLCLMQTYFTASVSEDDDEMAVLGDSTFK 61 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 + VA Y +IF ++ +A KD+++ + + V+FY E + PW + Sbjct: 62 VKVADYQQIFQVSRNQAIKDVKEGVFELSRSAVIFYPKEGSFD----CVARPWLTEAGSR 117 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 +RG++ + N L+ + GL N+FT + L + + NP +RLYESL Q++ SG+ Sbjct: 118 SARGIWEIEFNHKLLRYIYGLTNQFTTYSLRDCGSLRNPRTIRLYESLAQFK---SSGLW 174 Query: 182 SLKIDWIIERYQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 W+ +R+ LP+S + + + +R FL + +IN +TP+ Y G+ I+ Sbjct: 175 VTTHAWLNDRFLLPESQQKNLAELKRSFLDPALKQINEKTPLLAKYSIDDSGKFLFSII 233 >UniRef50_P22308 Replication initiation protein n=12 Tax=root RepID=REPY_ECOLX Length = 316 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 12/229 (5%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 + ++N+L + Y L+ + +++ V + + + +YA++ ++ Sbjct: 5 VVFKANELAISRYDLTEHETKLILCCVALLNPTIENPTRKERTVSFTYNQYAQMMNISRE 64 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 A + +A + + V P KG+E F W S + + + ++ Sbjct: 65 NAYGVLAKATRELMTRTVEIRNPL-----VKGFEIFQWTNYAKFSSEK--LELVFSEEIL 117 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY--RKPDGSGIVSLKIDWIIERYQL 194 P+ L+ F ++ L K N Y+MR+YE L + +K + + +D L Sbjct: 118 PYLFQLKK-FIKYNLEHVKSFENKYSMRIYEWLLKELTQKKTHKANIEISLDEFKFMLML 176 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 +Y + L+ ++N+ + M+L K+GR T ++F Sbjct: 177 ENNYHEFKRLNQWVLKPISKDLNTYSNMKLVVD--KRGRPTDTLIFQVE 223 >UniRef50_Q45152 RepA protein n=3 Tax=Bacteroides RepID=Q45152_BACFR Length = 331 Score = 156 bits (395), Expect = 7e-37, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 96/236 (40%), Gaps = 21/236 (8%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQ--------EHDGICEIHVAK 66 + ++QS +T A Y + +KR++Y V+ + ++ EHD I++ Sbjct: 5 NKDLIQSYIMTTAKYDFNVYEKRIIYRLVEMAQGELQGIKFANNCQKIEHDLFSCINITM 64 Query: 67 -YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 A + + +++AL+S K + D++ ++S Sbjct: 65 PIACLLNGEEDKNYARVKEALQSLQRKIFEY-------EDDEVWQSISIIALPYIRKRSS 117 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 + S ++P + + + ++ L + ++MR YE L + P + I Sbjct: 118 VISFQVHPRVWDCILNFSKGYRKYELKAAMSFKSQFSMRFYELLSNQKTP-----LIYSI 172 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 D + E + + Y+R+ DF R+ ++ E++ +P + K GR+ T I F Sbjct: 173 DQLKEMFCVADKYKRVNDFMRKVVEAAKKELDEVSPYTFEFTPLKSGRKITAIKFY 228 >UniRef50_Q8VQM9 Replication protein n=2 Tax=Prevotella RepID=Q8VQM9_PREIN Length = 326 Score = 156 bits (394), Expect = 7e-37, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 92/236 (38%), Gaps = 20/236 (8%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY----- 67 K + +QS T A Y + +KR++Y V+ + + D + +I + Sbjct: 6 KGNELAIQSYIFTTAKYDFNAYEKRIMYRLVEFAQDEIKGIMIRDHMHKITPTLFGREIT 65 Query: 68 ---AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 A+I + ++A +S A K V + D++ ++ + Sbjct: 66 MPVADILRNEKDQNYTIAKKAFRSLAQKGVEY-------EDDEIWQYTSIISSPKIDKIK 118 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G + + + + ++ L + + Y+MR+YE + ++P + Sbjct: 119 GYVVFTVLDDIWRCLLDFTKGYRKYELVTAMQFKSVYSMRMYELMSGQKRP-----LEFT 173 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 + + R+ + Y+ + F+ R L + E++ +P +YIE K GR+ F Sbjct: 174 FEDLKIRFGVKDKYKLVGHFKTRVLDIAKKELDESSPYSFNYIEVKGGRKVIGFKF 229 >UniRef50_Q9X3R7 Replicase n=2 Tax=Riemerella anatipestifer RepID=Q9X3R7_RIEAN Length = 309 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 94/238 (39%), Gaps = 24/238 (10%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 ++ I Q N +T Y S +LY+ + + K H EI Sbjct: 7 KEEDKLIYQHNVITSGRYDYSACMLDILYMVLSGLEKDKLEYNIHVQDIEII-------- 58 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 K +R++ ++ + PE +E F + + G ++V + Sbjct: 59 -TGRKWNLKQLRESTENIGSRMFEIETPE-------SFEQLWLFSRVKYLKGTGSFTVKL 110 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 N +P+F L+N FT +L ++ YA RLY CQ+R GI +I+ + + Sbjct: 111 NDEAMPYFFDLKNNFTSMQLKSVLNCSSKYAKRLYAIACQWRSV---GIKRFEIEELKKM 167 Query: 192 YQLPQS-----YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 L ++R+ DF++ L V +I+ T + L + KK+GR I + Sbjct: 168 LGLIDKKGNEQFERISDFKKFVLDVAREQISENTDIELDFELKKRGRSFHWITLHINN 225 >UniRef50_C9KZX8 Initiator RepB protein n=4 Tax=Bacteroides RepID=C9KZX8_9BACE Length = 334 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 95/250 (38%), Gaps = 21/250 (8%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKS--------DGT 52 M N+ + +QS +T A Y S +KR+LY V+ + D Sbjct: 2 MKTKQQKNNSVTVVNKDQIQSYIMTTAKYDFSVYEKRILYRIVEMAQGELQGVRFATDCK 61 Query: 53 LQEHDGICEIHVAK-YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYES 111 EH +H+ A + S E ++QAL S K + DEK + S Sbjct: 62 KIEHTLFDTVHITMPIASLLNGESDENYTRVKQALLSLQKKIFTY-------EDEKEWIS 114 Query: 112 FPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ 171 + S I+ ++ + F ++ L+ + + Y+MR YE L Sbjct: 115 ISIIALPKIKKRSSVVSFQIDSHIWDCCLDFSKGFRKYELATAMKFKSVYSMRFYELLSG 174 Query: 172 YRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 + + ++ + E +++ Y + DF R+ ++ NE++ +P + K+ Sbjct: 175 QKTK-----LIYPLEQLKEMFKVQDKYAKTNDFVRKVIEPAKNELDELSPYTFEWSANKE 229 Query: 232 GRQTTHIVFS 241 G++ F Sbjct: 230 GKKIVSFNFY 239 >UniRef50_C6ZBN9 Replication protein n=1 Tax=Bacteroides sp. 4_3_47FAA RepID=C6ZBN9_9BACE Length = 340 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 93/250 (37%), Gaps = 24/250 (9%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQI---RKSDGT-LQEHDGIC------- 60 + S I QSN T A Y + +K +LY +Q R+++ +EH+G Sbjct: 6 KTQSKDIQQSNYFTTAKYDYTLQEKIILYRVAEQAFEYREANKEWFKEHEGEYIAKDHVS 65 Query: 61 -EIHVAKYA--EIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIK 117 + + + E S + D+ A KS K + F + + Sbjct: 66 FRLPITHFMTKEQRADGSGKCYDDVVAAFKSLTSKRIEFQTKDAFSFG-------ALLNS 118 Query: 118 RAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG 177 P G+ ++ ++ + FT+ L E+ + Y+MR YE ++ Sbjct: 119 ADREPGEGIIYFTVHKFVWQSALDFTKGFTKLDLVVAMELKSAYSMRFYEIARRW---SD 175 Query: 178 SGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 + I + ++ + + + Y D +R + E++ P SY + K GR+ Sbjct: 176 TKIWKISVEDFRDLFGCKEKYPAFNDMKRYIIDNAKEELDRVAPWSFSYEQHKVGRKVES 235 Query: 238 IVFSFRDITS 247 F F +I Sbjct: 236 FTFYFYEIPK 245 >UniRef50_Q83Z35 RepB n=4 Tax=Helicobacter pylori RepID=Q83Z35_HELPY Length = 438 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 54/242 (22%), Positives = 100/242 (41%), Gaps = 11/242 (4%) Query: 11 KRKNSPRIVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRK-SDGTLQEHDGICEIHVAKYA 68 K+ I Q N A Y + ++ + Y + ++ SD Q H E+ +++ Sbjct: 23 KKSQKYLITQDNRFIYAKYGDTTANELKFFYYVISKLNSISDKDFQLH----EVPISEIL 78 Query: 69 -EIFGLTSAEASKDIRQALKSFAGKEVV---FYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 E+ S + I+ +S + + + +E+ +E F + + + Sbjct: 79 GEVLSHESEDNYTYIKNLCRSLSKRILEDESLVYNPVTKKEEEMFEVMAIFKRIQYLKRK 138 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 + +N L P+ +GL FTQ L I + YA+R+Y+ L V L Sbjct: 139 AVICYQLNDCLKPYLLGLSKNFTQIPLQHILPIRSGYAIRIYQILLS-ELKQNRNEVDLY 197 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 + + + +P+SY DF+ L+ + EIN+ T + SY KK+ ++ T IVF Sbjct: 198 LINLQDVLCVPKSYYAWKDFKNNVLEPSLKEINATTDILASYRTKKERQKITQIVFEICY 257 Query: 245 IT 246 Sbjct: 258 KD 259 >UniRef50_A6XA85 Rep n=1 Tax=Bifidobacterium bifidum RepID=A6XA85_9BIFI Length = 289 Score = 153 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 92/236 (38%), Gaps = 20/236 (8%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI--------CEIH 63 + + ++QS +T + Y S +KR+LY V+ ++ + + G+ + Sbjct: 4 KITNKDVIQSYLMTVSKYDFSVYEKRILYRLVEAMQCEIEGKKLYPGLRIEKTLYDDRVV 63 Query: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 + + E +++AL K F D + ++ K + Sbjct: 64 LMPISAFLANDDDENYTRVKKALLDLRNKSFEF-------DDGQIWKVIGIIEKPQFNYK 116 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 RG I P + + F ++ L E T+ Y+MR YE + +P + Sbjct: 117 RGWVRFEIQPEVYNAVLNFSKGFRKYELKTAMEFTSQYSMRFYELMSGQERP-----LIY 171 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 I+ + + + Y+R PDF +R + E+++++P Y K+GR + Sbjct: 172 TIEDLKIMFGVQDKYKRNPDFIKRIIVPAKEELDAKSPYSFEYKILKEGRSFHSLK 227 >UniRef50_O68836 RepA n=3 Tax=Francisella RepID=O68836_FRATU Length = 339 Score = 153 bits (387), Expect = 5e-36, Method: Composition-based stats. Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 30/258 (11%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 M E +N K I SN L YSL+++++ +++L +++ D + Sbjct: 1 MKEVKNVNAGKE-----IAMSNTLVAGKYSLTKEEQNLIFLVASMVKREDKEFHRY---- 51 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 +I ++ + G+ ++Q + S K V +++ + WF Sbjct: 52 KISLSDLEKATGVKHNRV--RLKQLMHSIMSKPVWL--------NKEQTKIANWFAYIEA 101 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 P + L+P I LQ FT+ + Y+ RLY L + + + +G Sbjct: 102 DPKSSALICEFHWSLMPHMIQLQEYFTKAERQLLFSFKSKYSSRLY-LLLKSKLGEQAGY 160 Query: 181 VSL-----KIDWIIERYQLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEK----K 230 ++ +D +I + LP+SY R +F+ +FL + EIN + + ++Y +K K Sbjct: 161 ANIVDCVLYVDDMINDFDLPKSYSNRYSNFKNKFLLPALEEINQLSDIFVTYDDKDHHRK 220 Query: 231 KGRQTTHIVFSFRDITSM 248 GR+ T+I F+ + Sbjct: 221 HGRKITNIKFTVSKVAET 238 >UniRef50_A6TSD9 Initiator RepB protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSD9_ALKMQ Length = 240 Score = 153 bits (386), Expect = 7e-36, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 92/233 (39%), Gaps = 24/233 (10%) Query: 19 VQSNDLTE--AAYSL-----SRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 +SNDL+E A L + + ++ + IRK D + EI ++++ ++ Sbjct: 12 KKSNDLSEWMATKILLKNPFTVMELKLFTCVLSMIRKDDDLKE-----YEISISQFMKMP 66 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 G TS I+QA + K V R + G V Sbjct: 67 GTTSKNVYDQIQQAGERLMQKIVTIQRGDRRI-------RVALMSSVETKMGGGTVKVSF 119 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 +P + P I LQ ++T++ L + + + +RLYE Q G +L +D I Sbjct: 120 DPKIKPELITLQEKYTEYTLGNIMALRSTHTIRLYELFKQCLPD---GERTLTVDEIKSH 176 Query: 192 YQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYI-EKKKGRQTTHIVFSF 242 + P SY+R D + + + + EI T + ++ ++GR+ F Sbjct: 177 LTIAPDSYKRTNDLKEKVVDKSLEEIGELTDIVVNIKHANREGRKIIGWTFVI 229 >UniRef50_Q3T4G0 RepA n=1 Tax=Capnocytophaga ochracea RepID=Q3T4G0_CAPOC Length = 372 Score = 150 bits (378), Expect = 5e-35, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 95/238 (39%), Gaps = 25/238 (10%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLY--------LFVDQIRKSDGTLQEH---DGICEI 62 + ++QS LT A Y + +KR++Y L + Q K ++ + D I Sbjct: 5 KNKEVLQSYILTTAKYDFTIYEKRIMYRQIEIEQELLLGQSIKPGVIIETNLWKDKKYTI 64 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 V + + +++A ++ K++++ P+ E FP + Sbjct: 65 PVNWL--LPNGEKDKNHAQVKKAFEALMSKKIIYETPD-------AIEGFPLIQRFKVDK 115 Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 + + ++ + F ++ L E + YAMR YE L + P ++ Sbjct: 116 KGETVTWQVPKEIVDVIVNFAKGFRKYELKTAMEFESVYAMRFYELLSGQKNP-----LT 170 Query: 183 LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 I+ + + +++ Y+ DF R ++ E+++++P Y K GR+ I F Sbjct: 171 YTIEQLKDMFKIQDKYKLTADFLRYVIEPAKKELDAKSPYSFEYKINKSGRKFHSITF 228 >UniRef50_B0V3W3 Putative replication protein n=2 Tax=Acinetobacter RepID=B0V3W3_ACIBY Length = 316 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 99/243 (40%), Gaps = 18/243 (7%) Query: 9 HKKRKNSPRIVQS--NDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAK 66 + K+ P + N +TE S+S D+KR+L + R D + Q+ I + Sbjct: 5 NSYDKSYPVTTMAIQNKVTECFKSMSVDEKRILIMASPIARNVDASEQDQ---ILISAQQ 61 Query: 67 YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 +A+ G+ A K I A K + + D W I + Sbjct: 62 FADDCGIKVNSAYKQIENASKKLVDRSFSY------VNDRGKKVYSNWVIDATYED--AG 113 Query: 127 YSVHINPYLIPFF--IGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 S+ ++ + N +T+++ ++ Y++ Y + + +G L Sbjct: 114 ISLRFTSIVLVMLKILDKYNPYTRYKKDVVLKLKKDYSIDFYHLAKKNQAKNG---FELT 170 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 +D + + LP+SY+ + + +RR L+ ++EIN T + + Y KKGR F+ ++ Sbjct: 171 LDEMFTEFGLPESYRDLRNLKRRVLKSSLDEINEFTDVTVDYSPVKKGRSVVGFKFTVKE 230 Query: 245 ITS 247 + Sbjct: 231 KSK 233 >UniRef50_Q02V81 Replication initiator protein n=74 Tax=root RepID=Q02V81_LACLS Length = 443 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 97/251 (38%), Gaps = 20/251 (7%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 K +IV+ NDL + + + ++ L V I D D + + Sbjct: 20 KEIEKRKIVEHNDLITSVAKMDKTPLKIFELAVSCI---DTENLPKDNTIYLSKEELFTF 76 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 F ++ ++A+K + F+ E+AG ++S + + Sbjct: 77 FDVSDNGKHTRFKEAIKVMQKEA--FFEIREEAGKGFKFKSIVPIPYVEWTDYHDEVKIE 134 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLC----QYRKPDGSGIV----- 181 + ++P+ I L+ FTQ+ LS+ E+ + Y++ LY+ L QY G Sbjct: 135 FHREIMPYLIELKKNFTQYALSDVMELNSKYSIILYKWLSMNYNQYEHYSAKGGRRVNQV 194 Query: 182 ------SLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQT 235 S+ + + E Y+ M +F +R L + EIN T ++Y + KKGR Sbjct: 195 ESYRNPSITVKELREITDTIHEYKDMSNFTKRVLDNSLKEINHHTSFNVTYDKIKKGRSI 254 Query: 236 THIVFSFRDIT 246 IVF Sbjct: 255 DSIVFHIEKKP 265 >UniRef50_B6D407 RepA n=1 Tax=Capnocytophaga canimorsus RepID=B6D407_9FLAO Length = 357 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 27/238 (11%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI-----------CEIH 63 + ++QS LT A Y + +KR+LY V+ +++ + + ++ Sbjct: 5 NKDLIQSYILTTAKYDYTAYEKRILYRVVELMQELTEEKKLNQKYSVQTNLFGDVDIQMP 64 Query: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 V+ + + + ++ALKS K++ + D K ++ F I+R Sbjct: 65 VSSFLKDEN---DQNYGIAKKALKSLNSKQIEY-------EDNKVWKLFN-LIERPVIDK 113 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 +G + ++P + F+ F ++ L + + YAMR YE + KP ++ Sbjct: 114 KGYVTFRLHPIIASVFLDFSKGFRKYELKTAMQFESVYAMRFYELMSGQEKP-----LTY 168 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 ID + +++L YQR+ DF R+ + V E++ ++P Y K+G++ I F Sbjct: 169 LIDDLKNKFKLENKYQRINDFFRKVIDVAKRELDKKSPYSFEYKINKQGKKFHSITFY 226 >UniRef50_Q6R586 Replication protein A n=1 Tax=Ornithobacterium rhinotracheale RepID=Q6R586_9FLAO Length = 325 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 93/241 (38%), Gaps = 23/241 (9%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRK-------SDGTLQEHDGICEIHV 64 + N+ ++QS +T A Y + ++KR+LY ++ ++K ++ L D + Sbjct: 2 KINNKDLIQSYVITTARYDFNVNEKRVLYRIIEHLQKYTTGLKLNEKYLINKDLFGDYLF 61 Query: 65 AKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA----H 120 F + +A ++ A K+ F D+ + Sbjct: 62 QMDLNTFLIDNANHYDRVKDAFLRLNDKKFEFQ-------DDDSWSIIRIIESPEIVGLS 114 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + + ++ + F+ + ++ + E + Y+MR YE ++P Sbjct: 115 TQGNSIVRFRLHKRIFDAFLDFSKGYRKYEIKVAMEFKSEYSMRFYELFSGKKEP----- 169 Query: 181 VSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 + I+ + + +++ YQ+ DF +R + E+ + P Y K GR+ THI F Sbjct: 170 IIYDIEELKKMFKIDGKYQKSSDFIKRVIDTAQKELTEKAPYSFKYETIKTGRRFTHIKF 229 Query: 241 S 241 Sbjct: 230 K 230 >UniRef50_Q83XW3 RepA n=1 Tax=Flavobacterium psychrophilum RepID=Q83XW3_FLAPS Length = 314 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 22/234 (9%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 +I+ SN +T + ++ Q +L++ + + K+D +E+ I + Sbjct: 9 DKKIMMSNSITSGRFDVTACQLDILFMLLSSLEKNDAVDKEYI----ISALDIEAL--TK 62 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 + +R++ + F + DEK + + K + + G + V INP Sbjct: 63 KKWNYQQLRKSTEDFGSRMFEI-------EDEKSLKQIWLWSKVEYYHNTGAFGVLINPI 115 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 +F L++ FT +L T+ YA RLY CQYR + + +D + L Sbjct: 116 ARQYFFELKDNFTSLQLKSVLNCTSKYAKRLYSIACQYRNMKFNP---MPLDEFKKMLGL 172 Query: 195 -----PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK-KGRQTTHIVFSF 242 +Y+ ++ L V +IN T +R Y K + R I Sbjct: 173 IDKNGKDTYENATALKKNVLDVAKKQINENTDIRFDYKLTKVRSRSYNTIHLYI 226 >UniRef50_Q93NB4 RepB n=11 Tax=Lactobacillales RepID=Q93NB4_9LACT Length = 275 Score = 145 bits (367), Expect = 9e-34, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 16/234 (6%) Query: 11 KRKNSPRIVQSNDLT-EAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAE 69 +++ +V+SNDL +A + L+ +Q +++ + +I+ D +E E + + Sbjct: 21 EQQQYYYVVESNDLISKAKHDLTTNQLKIIDFLISKIKPDDKDFEE----LETSMYELTN 76 Query: 70 IFGLTSA-EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 + + + I L KEV Y E + W + + G Sbjct: 77 VLEIKRSGRTYNQIANTLDDLRKKEVTIYNQERE-----SIVRTGWVSSAEYFKN-GKVI 130 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL--KID 186 + + L P+ + L ++Q+ L +T ++ + YA+ LY+ + + + +G I L + Sbjct: 131 LSFDKKLAPYLLDLSKNYSQYLLIDTVKLKSKYAILLYKLMREADRDNGKSITILQGTPE 190 Query: 187 WIIERYQLPQSYQRMPDFRRRFLQVCVNEINSR-TPMRLSYIEKKKGRQTTHIV 239 + P++Y + L+ + EIN + M L ++ + GR+ + Sbjct: 191 EFKDWLGAPKNY-NYGRLKENVLKKAIEEINLKIDDMNLEILQGRYGRKVVQVE 243 >UniRef50_D0UIP0 Replication initiator protein n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=D0UIP0_AGGAD Length = 325 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 96/229 (41%), Gaps = 7/229 (3%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 + +SN L + Y L+ + +++ + ++ + + D I +YAE G++ Sbjct: 5 IVYKSNGLVVSRYDLTEQETKLISYGIAKLNPTLTNPTKEDRTAIIPYKEYAEFMGISDE 64 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 + ++ A+ + + + P A K F W K + + + + Sbjct: 65 LSWHNLNNAISNLMSRTIEIVNPNPQAEISKII--FQWVNKAEFNQQNQCVELTFSEEIK 122 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY--RKPDGSGIVSLKIDWIIERYQL 194 P+ L N F +++L K + N Y+ R YE L + K V L + E L Sbjct: 123 PYLFNL-NEFVKYKLVHIKSLNNKYSTRFYEILLKLLGEKGKVKADVELSLAEFKEMLVL 181 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 +Y F +R L++ VN++N+ + + +S+ KGR +VFS Sbjct: 182 DANYPTYKQFNQRILKMIVNDVNNNSNLNVSFTT--KGRPVDTLVFSIE 228 >UniRef50_Q19N19 Replication initiation protein n=2 Tax=Campylobacter RepID=Q19N19_CAMJE Length = 358 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 103/244 (42%), Gaps = 8/244 (3%) Query: 3 ETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 +T+ +KKR + Q+N A Y ++ ++ +M V QI +L +CE+ Sbjct: 2 QTSKKTNKKRIQKAVVTQNNRFVYAKYDMNTNELKMFMWIVAQINSQKDSL---FQVCEM 58 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVV--FYRPEEDAGDE-KGYESFPWFIKRA 119 +++ E+ S E I+ + + K + F +E E + + P F Sbjct: 59 PLSEIFEVLNHQSEENYTYIKNLIDNMGKKTYIEDFKLLDEMTMKEVEIHRVMPLFQFIE 118 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 + S +N L+ + + + FTQ + ++ +++ + Y++R+Y L Sbjct: 119 YKKGASSISYRLNDSLMQYLLDQKRDFTQLKFNDIQQMKSAYSIRIYNMLV-CELKQNKQ 177 Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPM-RLSYIEKKKGRQTTHI 238 + + + + ++P++ F + L+ +IN ++ + L K GR+ T + Sbjct: 178 SLKINLAVLQNLLEVPKTLLEYKHFNVKVLKQAEKDINGKSNLVLLEIKTYKTGRKITDL 237 Query: 239 VFSF 242 F F Sbjct: 238 EFIF 241 >UniRef50_C3RRC7 Putative uncharacterized protein n=1 Tax=Mollicutes bacterium D7 RepID=C3RRC7_9MOLU Length = 256 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 13/236 (5%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 ++ +I QSN+L A + + Q R+ + Q + + + + E G Sbjct: 2 QSDLKIKQSNNLILATHKMDIQQMRLFFYACSQYKGDLDIKISLEEVNRV----LTENTG 57 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + IR+ + + +V E+ E + ++R+ + Sbjct: 58 NRGGNQRERIRETIPTLMRNAIVHIEDEKG-------EEWCSALRRSRLNKDDTVIFTFD 110 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESL-CQYRKPDGSGIVSLKIDWIIER 191 + L +T LS +T+ Y++RLYE + + S I+ + Sbjct: 111 KSIQKELEEL-RGYTWMYLSNLTGMTSTYSVRLYEFFAMRLGNANKSSKFDYDINKLRLY 169 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + Y+ DF +R L EIN ++ + +SY + K GR T I+F+F+ T Sbjct: 170 LDCTKKYKDFRDFNKRVLAQAEKEINEKSNIHMSYKKIKTGRSITSILFTFKWKTK 225 >UniRef50_B5A7F5 RepA n=2 Tax=Bacteroides RepID=B5A7F5_BACUN Length = 325 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 55/251 (21%), Positives = 104/251 (41%), Gaps = 23/251 (9%) Query: 9 HKKRKNSPRIV--QSNDLTEAAYSLSRDQKRMLYLFVDQIR----KSDGTLQEHDGICEI 62 KK K IV Q N LT A Y +KR LY + IR +++ ++ I Sbjct: 2 EKKDKKQRDIVLSQDNALTTARYKFDLIEKRALYSIIRNIRAQYIENENGRRDLFDDLII 61 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 + + E+ ++I ALK +++ +EK + S + H Sbjct: 62 TIHE-EELKKCGDNTKMQNIYDALKRLRNRDIEI-------NNEKMWLSIGFVNYVKHIK 113 Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 ++ + V ++ ++P+++ L FT + ++ + + ++ R YE CQYR +G Sbjct: 114 NKSYFEVQVSKEVLPYYVELAQNFTSYSMTVAIALKSTFSQRFYELCCQYRN---AGFFF 170 Query: 183 LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRT-----PMRLSYIEKK-KGRQTT 236 ++ + E + L + Y+R DF+RR L E+ + + K KG++ T Sbjct: 171 YTVEKLREMFMLEKKYKRGCDFKRRVLDDPQKELRELYNAGQCDLYFEFEPKSYKGKEVT 230 Query: 237 HIVFSFRDITS 247 F + Sbjct: 231 EYKFYVYTRQT 241 >UniRef50_B6YS87 Replication protein A n=4 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YS87_AZOPC Length = 532 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 110/269 (40%), Gaps = 42/269 (15%) Query: 1 MAETAVINHKKRK---------NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDG 51 M + VI +K+ ++ ++QS LT A Y LS +KR+LY V+ + ++ Sbjct: 1 MKDLKVIGQEKKIETIVLNRTLSNKDVIQSYILTTARYDLSVYEKRILYGIVECFQ-AEL 59 Query: 52 TLQEHDGICEIHVAKYAEIF----------GLTSAEASKDIRQALKSFAGKEVVFYRPEE 101 T ++ D I + ++ I++AL S K+++ Sbjct: 60 TGKKIDKDFSISPEMFGDVLIEMSFSLLLVDGDDKNHY-QIKKALYSLLDKKIL------ 112 Query: 102 DAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPY 161 +++ +E+F +K + + ++ + + + ++ L + Y Sbjct: 113 -RDNDREWEAFTLIVKPKINKYDRIIRFRLHEEVYEALLDFSKGYRKYELKTAMAFNSIY 171 Query: 162 AMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTP 221 +MR YE L +KP ++ I+ + ++L + Y+ + FR R + E++ ++P Sbjct: 172 SMRFYELLSGQKKP-----LTYSIEDLKAMFRLEKKYKDVGVFRSRVIDPAQRELDLKSP 226 Query: 222 MRLSYIEK--------KKGR-QTTHIVFS 241 +Y + K GR + I F+ Sbjct: 227 YSFTYQLEHEKERTNPKGGRKKVVAITFT 255 >UniRef50_A7ZGH9 Putative pNL871104_p1 n=1 Tax=Campylobacter concisus 13826 RepID=A7ZGH9_CAMC1 Length = 319 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 106/238 (44%), Gaps = 22/238 (9%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIR-KSDGTLQEHDGICEIHVAKYAEIF 71 KN IV S+ +T+ L+ + ++ + I K+D +E + + E Sbjct: 2 KNRNIIVHSDKITKGRSKLNLSEMKVFLATITTIDAKNDDEFKE----ITLDRQDFCEDT 57 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 L + ++ ++ + EK +E++P + + G Sbjct: 58 NLD----FRTVKSVCRTLLKQVYEIET-------EKVWEAYPIYQVFKYDKDTGEIKFKF 106 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 N Y+ P+ + + FT++++ +T+ Y++R+Y+ L R + + +++ + Sbjct: 107 NDYMRPYLLKIVESFTKYQIKNIINMTSKYSIRIYQILKDLR--NITRQKEFELEEFCDW 164 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRL--SYIEKKKGRQTTHIVFSFRDITS 247 ++P++ +R + + L++ EIN T +++ Y E+KKG++ + FS + ITS Sbjct: 165 LEVPKNKRRWGNLQFDILELAKKEINELTDIKILGIYPERKKGKKV--LSFSIKFITS 220 >UniRef50_Q4HN85 Initiator RepB protein family n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HN85_CAMUP Length = 370 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 52/252 (20%), Positives = 110/252 (43%), Gaps = 18/252 (7%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 T +I K+ ++ LTEA L+ + ++ Y V I+ SD +E+ E Sbjct: 3 KNTEIIELKEGFTRNQVRTHPILTEARSKLTALEYKIFYQIVTLIQMSDEEFKEY----E 58 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 I + K+AE L + + ++ S A + D K ++ F + Sbjct: 59 IDILKFAEALNLPTTN-REFLKNTCLSLAKQVF------YRDYDNKNFDVINIFQSFKYR 111 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQF-RLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + + + P+ + L+ +FT+ ++ K + YA+R Y L YR+ Sbjct: 112 HKEQKIIIKFSEDIKPYLLQLK-QFTKIHQIKYIKSFDSKYAIRFYTLLKDYRQ---MTY 167 Query: 181 VSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLS-YI-EKKKGRQTTHI 238 ++ + + +LP+SY+ D + ++ + EI++++ + ++ Y KK G++ TH Sbjct: 168 REFSVEALCKMLELPKSYKSFSDIYKYVIEPALREIDAKSDLEITNYEITKKIGKKITHF 227 Query: 239 VFSFRDITSMTT 250 SF++ + + Sbjct: 228 KISFKNKSEKMS 239 >UniRef50_D1PMT8 Putative replication initiator protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMT8_9FIRM Length = 575 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 18/231 (7%) Query: 29 YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE--ASKDIRQAL 86 Y+L+ Q++++ I+ SD L + E+ + ++ ++ G+ +++ + Sbjct: 2 YNLTLSQQKLMLHIFAMIKPSDTELPRY----EMSIYEFLKLCGVDPHNGSMYNQVKKNI 57 Query: 87 KSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRF 146 A V + R E + F W G ++ ++P+L P I L+ + Sbjct: 58 SDIASTPVQWIRIE----GTQKITMFRWIDGSTIDKRTGKITLTLSPFLKPHLIQLKEFY 113 Query: 147 TQFRLSETKEITNPYAMRLYESLCQYRK----PDGSGIVSL-KIDWIIERYQLPQSYQRM 201 T ++ + + Y++R+YE Y+ G + ID + ++ + Sbjct: 114 TTMDVTYIMLMKSQYSVRIYELCKSYQNLYLQNKAKGKPLVWDIDNLRKQVDCSAT--NW 171 Query: 202 PDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR-QTTHIVFSFRDITSMTTG 251 RR L +EIN T + Y KK + + I + Sbjct: 172 AHIRRTVLDKAKSEINGHTDILFDYAVYKKAKSKVVEISVQIEQVEQTEAA 222 >UniRef50_C4B6A3 Putative replication protein n=3 Tax=Clostridium botulinum RepID=C4B6A3_CLOBO Length = 348 Score = 134 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 105/245 (42%), Gaps = 10/245 (4%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 +IN+K++ ++++N L EA Y+L+ + R+ L + + +K G + C + Sbjct: 1 MINNKEK--QKILIKNNILIEAKYNLNLVENRIFTLLLYKFQKEKGKV----LTCTLSYE 54 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 ++ + + I LKS K+++ +E++ + + S+ Sbjct: 55 EFKNVIKNKNENTINGIINILKSLQRKQIIIKERKENSKNT-IWYSYNLINGFYFDDEHN 113 Query: 126 LYSVHINPYLIPFFIG-LQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 ++ + + N +T +S + N YA RLYE L + I++ Sbjct: 114 IFIIEATARIYKLLQEYFVNGYTPINISILLGLNNYYAQRLYEILRLW--SGTKSILNYT 171 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 ID + E Q+ Y DF+RR + + E+N ++ + E KKGR+ I F +D Sbjct: 172 IDELKELLQIKDLYSLYGDFKRRVIVPAIKELNKTGFFQIDFKEIKKGRKVISIDFLVKD 231 Query: 245 ITSMT 249 + + Sbjct: 232 LDTRI 236 >UniRef50_C0QUY9 Putative replication initiation protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUY9_PERMH Length = 516 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 92/259 (35%), Gaps = 27/259 (10%) Query: 9 HKKRKNSPRIVQSNDLTEAAYSLSRDQK-RMLYLFVDQIRKSDGTLQEH----DGICEIH 63 K+ + + N L E +++ +K +++ L + QI D + + Sbjct: 7 EIKQFRGEIVKKDNLLNEGIHTIDTAEKYKLMLLMIAQIATQDEKPTSPEEIANRTYSFN 66 Query: 64 VAKYAEIFGLTSAEASKD-IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 V Y + + +D + + + +D G Y + F Sbjct: 67 VEDYINLKQVKDKYFMEDYVMDMAEYLRDNSAITITEFDDEGRLTRYRTIWIFEDVDFKK 126 Query: 123 SRG--LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + + F L+N+F + L + + Y++RLYE L QY K G Sbjct: 127 TTNGWKVVYKFTYSISSFLFELRNKFIAYHLKNIMPMRSKYSIRLYELLKQYEKI---GE 183 Query: 181 VSLKIDWIIERYQ---------------LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLS 225 + ID E+ L Y+ D RRR ++ V E+N T + ++ Sbjct: 184 RTFDIDEFREKIGTRVFVIDKKTKKKKLLSDDYKDFLDLRRRVIEKAVEEVNKYTDIEIT 243 Query: 226 -YIEKKKGRQTTHIVFSFR 243 +KGR+ I F F+ Sbjct: 244 DVEYHRKGRRIGFITFYFK 262 >UniRef50_UPI000197AD3E hypothetical protein BACCOPRO_01779 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197AD3E Length = 327 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 89/236 (37%), Gaps = 17/236 (7%) Query: 10 KKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAK--- 66 + + + QS T A Y S +KR++Y ++ + ++ D + +I Sbjct: 2 SENLPNKAVFQSYIWTCAKYDFSPYEKRIIYRLIEFAQHWLEGVKIKDHMHKIEPTDCGV 61 Query: 67 -----YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 A+I + + A S + K + D++ + Sbjct: 62 NITMPVADILRDETDNNYAKAKAAFTSLSKKGAEY-------EDDEIWFYTAIIEHPKIK 114 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 G+ + H+ + + F ++ L + + YAMR YE + P + Sbjct: 115 KGTGVATFHVYEPVWRAALDFTKGFKKYELVTAMKFKSVYAMRFYELMSGQTTPLFVPLE 174 Query: 182 SLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 D + ER+ L Y+R+ DFRR+ + V E++ +P E+K+G++ Sbjct: 175 GS--DGLRERFNLQGKYERVNDFRRKVIDVAKKELDKFSPYSFVAKEEKEGKKVIG 228 >UniRef50_B5TTF0 Putative uncharacterized protein rep n=3 Tax=environmental samples RepID=B5TTF0_9BACT Length = 401 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 98/262 (37%), Gaps = 27/262 (10%) Query: 8 NHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKS---DGTLQEHDGICEIHV 64 ++ + K + +V ND A YS+ + ++++Y + +RK+ + T HD + Sbjct: 16 SNTRAKLTDLVVTRNDFPTARYSIDLNLEKLMYCAMIIVRKNELQNKTSITHDDFIYVSS 75 Query: 65 AKYAEIFG----------LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYE--SF 112 + E+ E ++ ALK K F P D + E Sbjct: 76 ENFGELTSPMARKEVLTATDKREIQRNAETALKRIYTK---FDNPTMLVKDGESDEPAKV 132 Query: 113 PWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNR-------FTQFRLSETKEITNPYAMRL 165 P + + V +F L + F+ L + Y++RL Sbjct: 133 PMMTYCHYDKATKCIKVRFAKEFFEYFYDLVKKVDEKTKSFSSHELKHIILFNSSYSLRL 192 Query: 166 YESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLS 225 Y L Y + V++ ++ + + Y+ + +F+ R L V +EIN + + +S Sbjct: 193 YRILMSY--MWRTSEVTIDLEELRWMLECEDKYKELANFKSRVLNVAQDEINELSNINVS 250 Query: 226 YIEKKKGRQTTHIVFSFRDITS 247 + K G++ I F F T Sbjct: 251 FENVKNGKEVVAIKFIFNLKTE 272 >UniRef50_D2QUY6 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QUY6_9SPHI Length = 323 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 95/228 (41%), Gaps = 19/228 (8%) Query: 23 DLTEAAYSLSRDQKRMLYLFVDQIRKSD-------GTLQEHDGICEIHVAKYAEIFGLTS 75 L + + ++R+ +L + I++ TL +I + ++ +S Sbjct: 12 RLLLSRNNFDLLERRVYWLILRHIKQLQTLRPAEVETLPSEFPAFKIPITDL-QLPNSSS 70 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 ++ + +++ P + + K G+ +V +N +L Sbjct: 71 EVNYSTYKRVAQRLTSRQLYLDSPAQHEFTSVVVFPMARYSK-------GVLTVEVNKHL 123 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 +P+ I L +T+ +L + + YA LY LC++ +GI + + + + Sbjct: 124 VPYMIDLSKGYTKLQLQAALSLNSQYAQNLYTRLCKFLD---TGIWRVSVIDLKDILDA- 179 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 Q Y R +F++ L + EIN +T + + EK++GR T ++F+ + Sbjct: 180 QQYVRWSNFKQTVLARAMEEINQKTDIEVFVNEKREGRFITTLIFTIK 227 >UniRef50_Q9LAL2 Putative uncharacterized protein n=1 Tax=Moraxella catarrhalis RepID=Q9LAL2_MORCA Length = 429 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 89/258 (34%), Gaps = 26/258 (10%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 I +SN L E A+ LS + ++ L ++++ ++ I ++A + Sbjct: 15 KEIEIFKSNALVEGAFDLSPAEHDLMTLAINKLFSQGVGGKQ----VFISAKEFAIANQI 70 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYE-----------------SFPWFI 116 A + + + K + ++ G E W Sbjct: 71 NENYAYEVLAETAKRLQKRTFKAKIYKDGLKKLVGEEDPYSVARPKGDYELLDLHANWVQ 130 Query: 117 KRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR--- 173 A+ G + + L +T++ +T ++ + RLYE C+ Sbjct: 131 AVAYQEKSGFIYLMFSDVLAYLIQKTGEAYTKYPYEKTIDLKRFHTKRLYELCCKRAGSK 190 Query: 174 --KPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 V++ +D + + Y + DF+R L + EIN + L++ ++K Sbjct: 191 PPHGKKYPKVTMVVDEWKDFFGCINKYGAVNDFKRYVLTPVIKEINEQGEFELTFEQEKI 250 Query: 232 GRQTTHIVFSFRDITSMT 249 G+ TH D + T Sbjct: 251 GKIITHFTLIINDKRTKT 268 >UniRef50_C0EYN5 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EYN5_9FIRM Length = 267 Score = 129 bits (324), Expect = 9e-29, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 94/235 (40%), Gaps = 17/235 (7%) Query: 13 KNSPRIVQSNDLTEAA--YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 K S R V SN A +S +++LY+ + Q +K+D E+ EI V ++A++ Sbjct: 8 KESVRTVTSNQFITACGLEGISLKARKLLYIAISQSKKTDTEFYEY----EIGVKEFADL 63 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 G+ ++ V + K + + F ++ + G Sbjct: 64 MGIAPTHVYQEADVVTDELMRGFVKIQEK-----NNKSWRKYQLFDMCQYTEN-GSIRFE 117 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI-----VSLKI 185 I+ + F + L F+Q L + ++ +PY+M ++ + K G+ + + Sbjct: 118 ISKQMTDFLLNLTGNFSQPLLYDFLKMRSPYSMAIWHLMQMKMKSKKLGVTATTSFDISL 177 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 + + +++ +F++R L + EI ++++Y K GR F Sbjct: 178 AELRKVTGCIDKLKQVGEFKKRVLDKALREIFDCAGVKITYQNIKVGRTVEGFRF 232 >UniRef50_Q06362 ORF195 n=1 Tax=Desulfovibrio desulfuricans RepID=Q06362_DESDE Length = 195 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 17/194 (8%) Query: 17 RIVQSNDLTEAAYS-LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 + +SN L A +S S + RM+ L +R+ D QE+ V+ + L+ Sbjct: 12 IVKKSNALARAKWSPKSVWEPRMVALVASMVRQDDADFQEY----RFPVSTLCDEQELSG 67 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 KDI+ A+++ V+ K Y ++ F K + G+ +P L Sbjct: 68 KR-YKDIKAAVENVMKAYVMIEE-------GKNYVAYSIFSKCGYE--NGVMVAAFHPDL 117 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY-RKPDGSGIVSLKIDWIIERYQL 194 P F+GLQ +FT++ L E + + Y+ R++E L + KP+ + + + + W + Sbjct: 118 KPHFLGLQKQFTRYSLMEFLVLPSTYSQRVFEVLRSWDDKPEVTIHLLIFMKWWVRLLLC 177 Query: 195 PQSYQRMP-DFRRR 207 +S F RR Sbjct: 178 GRSTPTFAVRFLRR 191 >UniRef50_D0SGM0 Putative uncharacterized protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SGM0_ACIJO Length = 433 Score = 121 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 91/245 (37%), Gaps = 23/245 (9%) Query: 22 NDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQ---EHDGICEIHVAKYAEIFG------ 72 ND+T A YS ++++++Y + +RK++ + D + I A + E+ Sbjct: 36 NDMTTANYSYEANEEKLVYCAMVAVRKNELNKNMRFDPDELITISAANFGELISEKDLDK 95 Query: 73 --LTSAEASKDIRQALKSFAGKEVVFYRPEE--DAGDEKGYESFPWFIKRAHSPSRGLYS 128 +T++E + R K+ + D+ P I +S Sbjct: 96 DVVTASELYEIHRYGEKALQRVYDSYKPKVMLIKKKDDPTPIKVPMIIYCHYSKETKCMQ 155 Query: 129 VHINPYLIPFFIGLQNR------FTQFRLSETKEITNPYAMRLYESLCQ----YRKPDGS 178 + +F L N F+ ++ + + YAMR+Y L Sbjct: 156 IRFAREFYNYFYNLINPTGMTHSFSTHQIRYVMRMRSNYAMRIYRILNSELWKAESLGIQ 215 Query: 179 GIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 I + ++ + + Y+ + + + R L V +IN + + + Y K G+ I Sbjct: 216 QIHDISLERLRFALDIEDKYKLIDNLKSRVLNVAKTQINKLSNLEIDYETIKNGKFVVGI 275 Query: 239 VFSFR 243 F+++ Sbjct: 276 RFTYK 280 >UniRef50_Q1PHH9 PCZ1.1 n=3 Tax=Bacillales RepID=Q1PHH9_9BACL Length = 338 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 108/255 (42%), Gaps = 29/255 (11%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAA--YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI 59 ++T +I+H+ I +SN+L+ A L+ +Q ++L + + +G+ Sbjct: 6 SKTQLISHE-----NSIKKSNELSMAKLNQGLTLNQMQLLAFSI--------YCTQQNGV 52 Query: 60 CEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 E H + + FG+T + +D R+ + + PE+D D W I R Sbjct: 53 TEFHKIDFEKKFGITKYKT-EDARKDSDKVTSVKFSQWNPEKDYFD-------FWNIFRG 104 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 + +G+++ +IP + L+ ++ L+ + + ++ LY+ + + G Sbjct: 105 MNYHKGIFNFTWAEEMIPHILELKEKYITTDLTIASKFKSSFSWTLYDYI---KALHGYW 161 Query: 180 IVSLKIDWIIERYQLPQS--YQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTT 236 + D +++ + + YQ R+ L + + EIN T + +SY +K+GR Sbjct: 162 HKQISKDELMKLFAVENKKAYQSNTSLLRQYVLDIAIEEINEHTELEVSYNVEKEGRAIV 221 Query: 237 HIVFSFRDITSMTTG 251 + + + + Sbjct: 222 GFDLIWSNGEKIASA 236 >UniRef50_D1PH89 Initiator RepB protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PH89_9BACT Length = 421 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 94/252 (37%), Gaps = 27/252 (10%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 I Q ND+T+A +LS ++ + I+K+ H ++ + + + ++ Sbjct: 51 ISQPNDVTQAISNLSAVERNCWLQILRGIQKNKDLPDGHPEKYQLTLTRSQLLECVSGHS 110 Query: 78 ASKDIR-QALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 ++ D ALK+ + VF+ + P + Y+V I P L+ Sbjct: 111 SNLDYAFNALKNITDSKKVFHSKD------GHRIYAGLLSYVDEHPDQETYTVGITPVLL 164 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL-- 194 P+F L + FT F + + Y+ R YE CQYR + I + + I + + L Sbjct: 165 PYFTNLSSEFTVFDMYIEMSFKSVYSQRFYEFCCQYRNKEDK-IFFMTVHDIKKMFNLLE 223 Query: 195 ----------PQSYQRMPDFRRRFLQVCVNEINSRT-----PMRLSYIEK-KKGR-QTTH 237 + Y+ DF++R L N+I + Y K K R T Sbjct: 224 IKDEKGNIIQKEQYKNGSDFKKRVLDKAKNDIRKLYEKGLCDVCFDYKVKSKNSRGAVTA 283 Query: 238 IVFSFRDITSMT 249 F + Sbjct: 284 YYFIIETNGNTA 295 >UniRef50_D2QW12 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QW12_9SPHI Length = 320 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 87/237 (36%), Gaps = 26/237 (10%) Query: 22 NDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKD 81 N L A +LS+ Q+ + Y+ QI+ + I EI + E G Sbjct: 13 NSLNRIAVNLSKLQRNLFYMVCSQIQPD----HTAETIYEISAIELMERTGDKIN--YAR 66 Query: 82 IRQALKSFAG-KEVVF--YRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPF 138 +RQ KE R +++ K F + G + I+ ++ PF Sbjct: 67 LRQQTLQLIHPKEFEMPSNRVDKEGKPRKNVLQTGLFASALYLEGEGTVQLTISAHVRPF 126 Query: 139 FIGLQN-----RFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 + F+Q + + + Y +Y+ L Q+R G + +D + Sbjct: 127 ILNFSEKLKGGNFSQLDVDLVLALRSKYGQAMYQQLTQWRFHADKGHM-YPLDELKTLLG 185 Query: 194 LP-----QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK---KKGR--QTTHIVF 240 + Y + +F + L+ ++ +T ++ +Y ++GR + TH+ F Sbjct: 186 VMNKDGFDKYSKWGEFDAKVLKPAKRDL-EKTDLQFTYEPMPAPRRGRGHKVTHVKF 241 >UniRef50_D0SHA2 Replication protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SHA2_ACIJO Length = 392 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 88/245 (35%), Gaps = 18/245 (7%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIR-----KSDGTLQEHDGICEIHVAKY 67 + + + SN L LS ++ + L + +D + E I ++ Sbjct: 22 RQNGVVSTSNRLIRPI-ELSANEYKALLYAMAVANYGEKNNADKEITEQTYIY-LYKDDL 79 Query: 68 AEIFGLTSAEASK-DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH-----S 121 A++ GL+ + I + K + + F E K + + Sbjct: 80 ADLLGLSKRNSINVAIDRIYKELSSRVAHFVIEEPVDDGRKKTKKVHSVVPIIRELRWED 139 Query: 122 PSRGLYSVHINPYLIPFFIGLQN-RFTQFRLSETKEITNPYAMRLYESLCQYR---KPDG 177 S+ + ++P+F L FT ++L + + +M LY + Sbjct: 140 DSKNALQIRFTSEVLPYFTQLAGGNFTTYQLKHLFALDSVASMSLYTYFIKNEFKFNTQE 199 Query: 178 SGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTT 236 + V L ++ + + + Y R DFRR L V EIN T ++L Y KKGR Sbjct: 200 TYEVPLLLENLKALIDINETKYDRWVDFRRYVLDKIVAEINENTDLQLEYETVKKGRPIV 259 Query: 237 HIVFS 241 + F Sbjct: 260 GVKFK 264 >UniRef50_A8EVY6 Replication protein n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EVY6_ARCB4 Length = 264 Score = 119 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 91/239 (38%), Gaps = 27/239 (11%) Query: 10 KKRKNSPRIVQSNDLTEA--AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY 67 K + +V+ N L A Y ++ +++ + I + D +I Sbjct: 16 SKVEKENLVVKHNALINATTKYKYETNELKLICTLISNID------NQKDKSFDIKYMNL 69 Query: 68 AEI-FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 ++ F + I +S K G F WF + G+ Sbjct: 70 RDLNFSEKDITNVEYITNLCESIMSKPFKI-----------GKGVFNWFSGLVYDD--GV 116 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID 186 + L P+ + L++ FT++ +S ++ + Y+++++E L QY+ G ++ ID Sbjct: 117 IEYAFDKRLKPYLLELKDNFTRYNISNILKLRSAYSIQVFELLTQYKTI---GNRTITID 173 Query: 187 WIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 + ++P +Y D R ++ ++ T ++ + KK G+ I F D Sbjct: 174 EFRKLLKIPNTYTN-KDIRV-MIESVQKDLKKNTTIKFEFSFKKLGKSFHSIDFQICDN 230 >UniRef50_B0V3Y6 Putative replication protein n=2 Tax=Acinetobacter RepID=B0V3Y6_ACIBY Length = 390 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 16/243 (6%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQI----RKSDGTLQEHDGICEIHVAKYAEI 70 + + SN L LS ++ + L + + + +H E+ Sbjct: 23 NGVVSTSNRLIRPI-ELSSNEYKALLYAMAVANYGEKNNQDREITEQTYIYLHKDDLGEL 81 Query: 71 FGLTSAEASK-DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH-----SPSR 124 GL + I + K + + F E +++ + + ++ Sbjct: 82 LGLDKKNSINVAIDRIYKELSSRVAHFVIEEPVDDNKRKVKKVHSVVPIIRELRWEDDAK 141 Query: 125 GLYSVHINPYLIPFFIGLQN-RFTQFRLSETKEITNPYAMRLYESLCQYR---KPDGSGI 180 + ++P+F L N FT ++L + + + +M LY + S Sbjct: 142 NALQIRFTSEVLPYFTRLANGNFTTYQLKDLFALDSVTSMSLYSYFIKNEFKYANQDSYE 201 Query: 181 VSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 V L ++ I + + Y R DFRR L + EIN RT ++L Y KKGR + Sbjct: 202 VELSLENIKALIDIGEKKYDRWVDFRRYVLDKIIEEINERTSLQLEYDTIKKGRPIVGVR 261 Query: 240 FSF 242 F Sbjct: 262 FKI 264 >UniRef50_C7UIY7 Initiator Replication protein n=9 Tax=Lactobacillales RepID=C7UIY7_ENTFA Length = 242 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 13/220 (5%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + + + + R D L + E+ A K L S Sbjct: 22 KFNAKEMDLFFALCA--RMKDKGLNN----IVFSFEELKELSDY-RTTAIKAFTDDLDSL 74 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 K + +E D+ + F F + + V INP L GL F++F Sbjct: 75 YSKMLQLTYRDE-YDDDGSFRRFVLFTSFDVNVKKQTVEVSINPKLEGILNGLTTEFSKF 133 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 LS + + YA L+ L QYR +G + I+ E +P Y +M + ++ L Sbjct: 134 ELSAFTSLRSTYAKTLFRLLMQYR---STGYYVVNIEEFRELLNIPD-YYQMGNIDQKVL 189 Query: 210 QVCVNEINSR-TPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 + + E+N+ + ++ I+ KKG + + F+F + + Sbjct: 190 KPAMKELNNYFEDLEITKIKAKKGNKIAKLEFTFTGLKTT 229 >UniRef50_UPI0001B43BA0 replication protein n=1 Tax=Listeria monocytogenes FSL J1-208 RepID=UPI0001B43BA0 Length = 238 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 105/236 (44%), Gaps = 22/236 (9%) Query: 16 PRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL- 73 I +S DL + A +SLS + ++ V ++ ++D L + +A+ E+ Sbjct: 11 KLITKSKDLIQKARHSLSAKELTLVDFMVSKLEETDKDL----FFVDTTIAEINEVCNFG 66 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A +AL + A K F+ ED G +IK G + ++ Sbjct: 67 QGGAAHSSTEKALLNLANKG--FWMLLEDGTKTIGRWLEKPYIKA------GQTRLKLDS 118 Query: 134 YLIPFFIGL-QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 + P+ + L + ++F + + + YA +LYESL Y++ + + V+ +I + + Sbjct: 119 DMAPYLLNLVDGKKSRFFFKDIINLKSIYAKKLYESLRSYQEEEITMSVN-EIKILFNKE 177 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 L + R+ + R+ N+IN+ T + +SY+ K+GR+T I F + + Sbjct: 178 DLE--WYRVLAYLRK----AKNDINNFTTIEVSYLTVKEGRETVAIQFKIKQKDQV 227 >UniRef50_O69393 Replication protein n=1 Tax=Ruminococcus albus RepID=O69393_RUMAL Length = 285 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 83/227 (36%), Gaps = 22/227 (9%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 +S + ++L++ + Q+ D + + V + A + +D+ S Sbjct: 1 MSLREAQLLFIAIAQVVHDDKDFKTYTT----TVPELATFMEIDENSLYRDLEGICTSLC 56 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 + V E+A K ++ F W + G ++ ++ + P+ + L+ + Q Sbjct: 57 SQVVKIQVGGENAKKGKKWKIFHWVSSAMY--DNGKLTLRLSDDIKPYLLELEAHYAQPF 114 Query: 151 LSETKEITNPYAMRLYESLCQ--YRKPDGSGIVSLKIDWIIERYQ----------LPQSY 198 L + YA RLY+ L K + + + + +Q + + Y Sbjct: 115 LGTLMTFRSYYATRLYQYLLADIGAKWGKIYEWNFTCEQLRDLFQPYVKDDKGNVIKELY 174 Query: 199 QRMPDFRRRFLQVCVNEINSRTPMRL-SYIEKK---KGRQTTHIVFS 241 R D R ++ + E+ + + Y E + +GR + F Sbjct: 175 PRNYDLVRFTIKPALEELGASDFAYVWDYEEHRAKTRGRPLQSVSFK 221 >UniRef50_B6YSC3 Replication protein A n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YSC3_AZOPC Length = 439 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 27/245 (11%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 +S I+QS +T A Y S +KR+LY ++ ++ D I Y + Sbjct: 18 STSSKDIIQSYIVTTARYDFSVHEKRILYRIIECLQYQLKGKHL-DKNFMISPDLYGMVR 76 Query: 72 GL---------TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 S+D+++ALK+ K + + ED G K + I++ Sbjct: 77 VTLPLSYLNPKKGKHISEDVKEALKTLQKKMIQY----EDNGQCKEVKLIEPPIEQPLIL 132 Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 R S ++ + F ++ L E + YAMR YE L +KP ++ Sbjct: 133 GR-EVSFLLHQDAYELLLNFPKGFKRYELKTAMEFNSVYAMRFYELLSGQKKP-----LT 186 Query: 183 LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK------KKGR-QT 235 + + +L Y+ + F R + E++ ++P +Y + +KGR + Sbjct: 187 YSTEKLKTMLKLENKYRDIRTFISRIIDHSKKELDQKSPYTFTYELEHEKERNQKGRKKI 246 Query: 236 THIVF 240 ++I F Sbjct: 247 SNIKF 251 >UniRef50_C6S581 Putative initiator RepB protein n=1 Tax=Neisseria meningitidis alpha14 RepID=C6S581_NEIML Length = 111 Score = 113 bits (282), Expect = 8e-24, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%) Query: 141 GLQNRFTQFRLSETKEITNPYAMRLYESLCQY-RKPDGSGIVSLKIDWIIERYQL-PQSY 198 ++ RFT + + + ++++ YAMRLYE QY K G G + + + + R+ L P Y Sbjct: 2 EIEKRFTVYEIEQVAQLSSGYAMRLYEFFMQYFDKQTGKGWLEVSLVDLRFRFGLLPNEY 61 Query: 199 QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 R+ +F+ R + +NEIN +T + +Y ++K GR T F F Sbjct: 62 ARIGNFKTRVIDYSINEINKKTDLTATYEQRKNGRVITGFRFEF 105 >UniRef50_C9A1Q4 Replication protein n=8 Tax=Lactobacillales RepID=C9A1Q4_ENTGA Length = 244 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 94/223 (42%), Gaps = 13/223 (5%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + + + + ++++ + E+ + + L++ Sbjct: 22 EFNAKEMDLFFALCARMKERGLD------NVRFSFEELKELSEYKFTGNDRFVHD-LENV 74 Query: 90 AGKEVVFYRPEEDAGDE--KGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFT 147 K + ++ ++ + + F F + S+ V +NP L GL + Sbjct: 75 YQKMISMSYRTDEINEDGDRVIKRFVLFTGFEINVSKMFVDVSVNPKLDYIINGLTTEVS 134 Query: 148 QFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRR 207 +F+LS I + YA L+ L QYR +G ++I+ ER +P+SY++M ++ Sbjct: 135 RFKLSAFTSIRSTYAKTLFRLLMQYR---STGYYIVRIEDFKERMDIPESYRQMGQIDQK 191 Query: 208 FLQVCVNEI-NSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 LQ + E+ N + ++++ I+ KKG + + F+F + + T Sbjct: 192 VLQPALRELQNYFSDLKVAKIKAKKGNKIAKLEFTFSGLKTDT 234 >UniRef50_C0BF49 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BF49_9FIRM Length = 410 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 94/289 (32%), Gaps = 54/289 (18%) Query: 1 MAETAVINHKKRK-NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI 59 M ET +K+ + + +SN L E+ S S ++++L + + + DG L I Sbjct: 1 MKETQKKPKEKQLLDHDTVSRSNVLIESKSSTSLFERKLLNIAIAKAYVEDGEL-----I 55 Query: 60 CEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 ++ +T +++ K G V E++ + F K Sbjct: 56 AKVSTKDVKNYLHITGNSIYSRLKEVSKETLGHVVSIEDDEKE-----NFIMFNVVNKCE 110 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLC-QYRKPDGS 178 + G+++ + P L+ +T+ L + + R+YE L QY + D Sbjct: 111 YRD--GVFTTRFTKEMKPHIYNLKKDYTRMSLDVLCSFKSLFTTRVYEILRTQYYRFDRE 168 Query: 179 ----------GIVSLKIDWIIERYQLPQ--------------------------SYQRMP 202 I + + ++ Sbjct: 169 QCDQLIVPRPPKNPYTIAELKFTLNVVDANASKAVKRLVEQGRFEEALAEIKDAPFEDWR 228 Query: 203 DFRRRFLQVCVNEIN--SRTPMRLSYIEKKKGR--QTTHIVFSFRDITS 247 +FRR+ L+V E+ + + Y K G+ + T I F + Sbjct: 229 NFRRKVLEVAKKELEESEYSEICFDYEPVKSGKGGKVTGIRFFVKKNPK 277 >UniRef50_B7LJA1 PI protein (Replication initiation protein) n=1 Tax=Escherichia coli UMN026 RepID=B7LJA1_ECOLU Length = 333 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 96/267 (35%), Gaps = 27/267 (10%) Query: 10 KKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAE 69 +K +I N++ + L KR+L L + + E I +I Y Sbjct: 39 RKISEKTKIRHRNEINKTLAQLPLSAKRVLCLALVSV--DTKKPLEPGMIFKITADTYTS 96 Query: 70 IFGLTSAEASKDIRQALKSFAGKEVVFYRPE-----------EDAGDEKGYESFPWFIKR 118 I + + A + +++ + ++ + + Sbjct: 97 ITKVKPSVAYRQLKEGAELLNTSKLSLSSDDILALSTELGLPDAMRKSLERLDMGITDYC 156 Query: 119 AHSPSRGLYSVHINPYLIPFFIGL---QNRFTQFRLSETKEITNPYAMRLYESLCQ-YRK 174 A+SP+ G + + P+ L +N+FT L+ ++ Y+ LY+ + + Y K Sbjct: 157 AYSPNEGYVVLKFTHTIHPYISNLIGGENKFTTQLLTSAMRLSGQYSWALYQLIRKNYSK 216 Query: 175 PDGSGIVSLKIDWIIERY--------QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLS- 225 S+ ++ + + ++ Y P F+R + + EI +T + Sbjct: 217 FRTKNYFSIHLNELKDELIAYTIEDDEVVYKYPEFPIFKREVINKAIKEIKEKTEIEFLS 276 Query: 226 -YIEKKKGRQTTHIVFSFRDITSMTTG 251 IE K+GR+ + + F F TG Sbjct: 277 CLIESKEGRKVSVLRFEFLVSEDKFTG 303 >UniRef50_D2QVZ6 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVZ6_9SPHI Length = 317 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 84/218 (38%), Gaps = 21/218 (9%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI---CEIHVAKYAEIFGLTS 75 Q+N +T A Y + +KR++YL + ++ K+ D ++ + + + Sbjct: 8 KQTNAITGARYDYTTTEKRLVYLSLIEVMKTVQDGITDDFFNRDLDLFIMEDQMKKSDPN 67 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 +D R+A+ S K+ + + + + + ++G V I+ + Sbjct: 68 DNRFRDYRKAVVSLRKKDFSIDETD------GSWTETGFVTRGKYKKNKG-LEVSISRDV 120 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 +P+ L RFT + + + ++ R YE CQ+R G D + + + Sbjct: 121 LPYLYELTKRFTVLDATVVMTLASKFSQRFYEWCCQWRSV---GKFEFTPDNLRDVLCIK 177 Query: 196 QSYQRMPDFRRRFLQVCVNEI-----NSRTPMRLSYIE 228 +R ++V E+ + + + +Y E Sbjct: 178 ---LLTAQLKRDVVEVAQAELMKMYEDGISDIYFTYSE 212 >UniRef50_D2QVG7 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVG7_9SPHI Length = 367 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 98/231 (42%), Gaps = 21/231 (9%) Query: 23 DLTEAAYSLSRDQKRMLYLFVDQIRK----SDGTLQEHDGI-CEIHVAKYAEIFGLTSAE 77 L + ++R+ +L + +IR ++ ++ + H ++ + Sbjct: 55 KLLTSTTEFGFFERRLYWLVLREIRNIQAVDKVKIKPYEELKFRFHYSEVIK------GH 108 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 + I++ ++ +++ E+++G FP + P +G+ + + +IP Sbjct: 109 PNSSIKKVVELIQKRKI---NWEDESGKYTNVVVFP---MAEYWPKKGVIELTMYHAVIP 162 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL-PQ 196 F+ L + + Q+ + +++ YA L+ +L ++R +GI + + + + + Sbjct: 163 VFLYLGSGYAQYGYEDALILSSEYAQLLFTNLARFRN---TGIWRIGLVELRQLIGAHEK 219 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 SY FR R + + + +IN T + ++Y +GR I F + T Sbjct: 220 SYANYSAFRTRVIDLSLRQINEHTNLIVTYEPVMQGRAVVGIEFRIQSKTP 270 >UniRef50_B6YSE0 Replication protein A n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YSE0_AZOPC Length = 373 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 54/268 (20%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL-TSAE 77 V+ N L + + LS + +RML + + ++ K T +++ + V+ + + FG+ Sbjct: 21 VKKNALLRSIFDLSTNAQRMLAMALARLPKEPKTPEDY--RVKFSVSDFFKTFGIERGTN 78 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA------------------ 119 ++ I A A + P+ D + FPW + Sbjct: 79 TNRLILNASDECASSVLKIESPDGDE-----LQKFPWLSECTLRKYIVFIPDRETHVSKL 133 Query: 120 -HSPSRG-------------LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRL 165 + + NP L + T L+ ++ + YA+R Sbjct: 134 NYHEDNAKTVKNPPALYQWDTVVMEFNPKLWETLKEFKGWST-VELNVLGKLQSKYAIRF 192 Query: 166 YESLCQYR-------KPDGSGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEIN 217 YE ++ P G +++ I E+ +P+ Y+ + +F+R +++ + E+N Sbjct: 193 YEWAMSWKGKAGKDGNPPGKYWFEMRLADIREKLAIPKSKYKAVKEFKRNVIKLPIEELN 252 Query: 218 SRTPM--RLSYIEKKKGR--QTTHIVFS 241 + + R+ K+G+ + I F Sbjct: 253 N-ADIGVRIDIAPFKRGQGVKLDLIRFD 279 >UniRef50_A1ZVZ5 Initiator RepB protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZVZ5_9SPHI Length = 317 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 23/244 (9%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 R+ SN LS + + YL V QIR+ D L+E+ I++ + G Sbjct: 12 TQDARVTLSNKFL-----LSEMEINIFYLLVSQIRQDDDDLKEY----VINLKDLELLTG 62 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRP-EEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 T + + + + + +V G E + ++ I Sbjct: 63 RTQKK--GTLLKVCEKLKKQTIVLKDVVSVTDGKEYEFIVENLIGAIKKPKNKQEIRTTI 120 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 +P + F+I L+ + +F+L ++ ++ RLY LC ++ +G ID ++ Sbjct: 121 SPDVRQFYINLKKHYNKFQLKNLLQLKGRHSKRLYMILCAFQD---TGWYYASIDELLNI 177 Query: 192 Y--------QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 + Q+ ++ L EI T +R EKK GR+ F+ Sbjct: 178 FASKVGEDGQIEVKKYTAGSLKKHILGKAKEEIEDVTELRFEIEEKKSGRKVVGYKFNII 237 Query: 244 DITS 247 + S Sbjct: 238 SVDS 241 >UniRef50_C3S7V4 Rep n=1 Tax=Streptococcus parasanguinis RepID=C3S7V4_STRPA Length = 270 Score = 104 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 8/242 (3%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + + +VQ+NDL +A +L + ++L + K + +H + F Sbjct: 16 SRQNYLVVQANDLAKAFGNLKAFEHKVLDYCFSSVTKDSRVGD----VFTVHSLDIMKHF 71 Query: 72 GLTSA-EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 GLT + + I +A Y PE + F + GL Sbjct: 72 GLTKNGQNYRRIAEAFSRLNENT-ALYIPETLPDGRRSIIMTQLFSRIRFIED-GLVEFK 129 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG-SGIVSLKIDWII 189 + P L+ + F L E + + Y++ L + YR + + ++ Sbjct: 130 FSEDAGPLVFELKRNYYSFHLDELGNVKSKYSLILMKLWEAYRLGNREYTTIKGSLEEWQ 189 Query: 190 ERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 + + + F+R L V E+ + + KKGR+ RD T Sbjct: 190 DWFLGEEKSWPAGLFKRNALMVACEELEMKFNADIDLTTVKKGRKVIGYEMVIRDRRMPT 249 Query: 250 TG 251 T Sbjct: 250 TA 251 >UniRef50_A0R7R9 Initiator RepB protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7R9_PELPD Length = 440 Score = 104 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 86/238 (36%), Gaps = 13/238 (5%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIR-KSDGTLQEHDGICEIHVAKYAEIFGL 73 + + N + ++ + ++++ + R + + DG + + + F Sbjct: 38 DYILKKHNAIIHRTHASTPTEEKVFSALLMVARAQMKSGIVPPDGKFQTSIK-FLRNFTR 96 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 T A + ++ AL S + + ED E + SF + G + P Sbjct: 97 TRATHNHLLKNALTSLQERPWQYDMFHEDKFQE--WRSFVPISEAR-INRFGCVTFFFAP 153 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 + + +TQ L + + + Y++ LYE ++ + Sbjct: 154 TINEALNN-PSIYTQIDLKIIRGLKSLYSIALYEL----GVTHIDEHREFSLEEFRDYMG 208 Query: 194 LP-QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQ--TTHIVFSFRDITSM 248 L Y D RR ++ VNE+N +T +R+ K+G + T F+F I + Sbjct: 209 LKVGEYSAPTDLRRHVVEPAVNEVNEKTDVRVEVRLLKRGNRGALTGFDFTFSRIEEV 266 >UniRef50_Q6AI77 Related to replication protein RepA n=1 Tax=Desulfotalea psychrophila RepID=Q6AI77_DESPS Length = 445 Score = 103 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 80/234 (34%), Gaps = 10/234 (4%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 + +S + Y + + + + L + + +++ AE + + Sbjct: 18 LVRKSTKMLSKNYCFTEREGKFIDLMIAVSDGNAEDFDS----LRFSISQLAEYYKIKPD 73 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 A K I++ K E+ + + ++ +G V +P + Sbjct: 74 GAYKAIQEITAGLITKGFQLTTTSEEGA--IIVSQSSFLCQADYNKGKGTVDVRFSPIMK 131 Query: 137 PFFIGLQ-NRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 + + + + + E+ R YE + Y +V ID + L Sbjct: 132 KYLLSASLKSYIAYPIGMRNEVVGGNVWRFYEIIRLYSFLGKKTLV---IDELKVLMGLT 188 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 Y++ DF + ++ + EI +T M SY +K GR+T + D + Sbjct: 189 SKYKQPTDFIKYVIEKAMVEIPLKTEMYFSYKTRKLGRKTHFLDLIIIDKDAQA 242 >UniRef50_B5KF63 Initiator RepB protein n=1 Tax=Octadecabacter antarcticus 238 RepID=B5KF63_9RHOB Length = 455 Score = 103 bits (257), Expect = 6e-21, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 94/253 (37%), Gaps = 26/253 (10%) Query: 5 AVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHV 64 + K K+ + + LS Q++++ + T +EH +I Sbjct: 2 KMKPEKYSKDKQILKKHVAAIHIGAKLSLLQRKLVNALLYNAYDQLLTAKEH----KISA 57 Query: 65 AKYAEIFGLTSAE-ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIK-----R 118 + E+ G S A ++ ALK V F E+D + K Sbjct: 58 SVLCEMIGFDSHNSAY--LKGALKGLMETVVEFDVLEDDGKTSWEAMVLLPYAKLKGGVC 115 Query: 119 AHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 + + L +P + +++ LS +E+ + +A+ LYE+ +Y + Sbjct: 116 TYRYEQSLAEKLYHPDV----------YSKINLSVLREMKSAHALVLYENCYRYVDIAHT 165 Query: 179 GIVSLKIDWIIERYQLPQ--SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTT 236 +D + + Q SY++ R +Q + E+N + ++L K+KGR T Sbjct: 166 PWWD--VDVFRKLMSVDQMISYKQFKLLNRAVIQPAMKEVNELSNIQLELETKRKGRTVT 223 Query: 237 HIVFSFRDITSMT 249 + F R ++ Sbjct: 224 GLRFIIRPNPQLS 236 >UniRef50_Q4L2Y4 Replication protein Rep n=48 Tax=Staphylococcus RepID=Q4L2Y4_STAHJ Length = 288 Score = 103 bits (256), Expect = 8e-21, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 15/214 (7%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + + + + +++++ D I A+ + + + I L+ Sbjct: 19 RFTSTEVDLFFTLCNKLKEQD------TRKVTIPFAELKYLSNYYTRSQERFIND-LEHV 71 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 K + E + + +E F F S+ IN L + FT+F Sbjct: 72 YDKMLNLTYIERNG---RSFEKFILFTSYKVDLDEECLSISINSDLKHILNSITADFTKF 128 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 L E + + YA ++ L QY+ +G V + +D R +P++YQ M D +R L Sbjct: 129 ELKEMTHLKSTYAKNMFRILKQYKH---TGYVKMNLDDFKNRLDVPKTYQ-MNDITKRVL 184 Query: 210 QVCVNEINS-RTPMRLSYIEKKKGRQTTHIVFSF 242 + +NE++ + ++ I+ KKGR+ + F+F Sbjct: 185 KPIINELSQIFNNLHINKIKAKKGRKIEWLEFTF 218 >UniRef50_B1BQZ4 Initiator RepB protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BQZ4_CLOPE Length = 358 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 90/245 (36%), Gaps = 15/245 (6%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 K NS I++ N+L Y+ ++++ LY ++K++ + + Y I Sbjct: 5 KHVNSADIIKHNNLIVCKYNAQVNEQKFLYKLFQFVQKNNIETNKLTIPFDDFFYDYKSI 64 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 + KD + + EE+ + + WF + + Sbjct: 65 --VNKKIGRKDFLNLILQVQRNIITIISTEEN-----NFITTVWFKIKGELNFEN-VELI 116 Query: 131 INPYLIPFF-IGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL--KIDW 187 ++P + + FT ++ + + Y MR+YE L ++ I+ Sbjct: 117 LDPDVFKYIKYQNGGEFTIIS-TDVYSLNSFYTMRIYEILKRWLAYCIKTKTPYIQNINQ 175 Query: 188 IIERYQLPQS--YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK-KGRQTTHIVFSFRD 244 + E L S Y +F R+ L+ + EIN++T + ++Y K + R+ + F Sbjct: 176 LKEILMLEDSKTYAEFKNFNRKILKPSIEEINNKTDILVTYNSVKGRKRKVESLEFFIEP 235 Query: 245 ITSMT 249 Sbjct: 236 NPKKN 240 >UniRef50_C5K6V2 Putative uncharacterized protein n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5K6V2_9ALVE Length = 151 Score = 99 bits (248), Expect = 6e-20, Method: Composition-based stats. Identities = 78/78 (100%), Positives = 78/78 (100%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC Sbjct: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 Query: 61 EIHVAKYAEIFGLTSAEA 78 EIHVAKYAEIFGLTSAEA Sbjct: 61 EIHVAKYAEIFGLTSAEA 78 Score = 94.9 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 72/72 (100%), Positives = 72/72 (100%) Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV Sbjct: 80 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 139 Query: 240 FSFRDITSMTTG 251 FSFRDITSMTTG Sbjct: 140 FSFRDITSMTTG 151 >UniRef50_UPI00016C5BA2 putative replication protein n=1 Tax=Clostridium difficile QCD-63q42 RepID=UPI00016C5BA2 Length = 395 Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 91/239 (38%), Gaps = 13/239 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 ++Q N+L ++ Y + + ++ Y + +K + + I + Sbjct: 3 KKEILMQPNNLIKSKYDFTNVENKLFYKILFNAQKQQNS----SYVTTISKEELKVFMKN 58 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + K+I++ L F + F EE G K + + +Y++ ++ Sbjct: 59 NNDYEHKNIKEILNMFQQSVLEFDYIEETTGKLKTF-GSGLINTYELDHTDQIYTIMMHE 117 Query: 134 YLIPFFIGL------QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW 187 L +N +T LS Y RLY + + + + K+D Sbjct: 118 VLYNHITDFVKMQKKKNGYTAINLSVLFNFRGAYTQRLYTLFRLWSRENKEVEIKYKLDE 177 Query: 188 IIERYQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK-KGRQTTHIVFSFRD 244 + +L + Y F++ L+ +NEIN + M +S E+K K R+ I+FS D Sbjct: 178 LRFYLKLKDNVYPEYKYFKQNVLKRAMNEINKKGNMVVSIKEEKRKNRKIDEIIFSVID 236 >UniRef50_A0R7S0 Initiator RepB protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7S0_PELPD Length = 399 Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 92/230 (40%), Gaps = 11/230 (4%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 +S + + + +T+ + +S Q++ L + R+ + +++ K I G Sbjct: 17 DSSYELKKHSAVTQISNRISLMQRKSYNLLLYFARE-QALKNPDLEMYSVNINKLRSIGG 75 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + IR++L+ G +K + + + + + + Sbjct: 76 VLIKDTKH-IRESLRELM----TVVVDHNILGKDKQGDWGAFVLLPEVNVKNSEITFALP 130 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P + + + + L+ T+ +++ YA+ LYE Y I + + + Sbjct: 131 PSIKNALLN-PRMYARINLAITRGLSSKYALALYEMARDY---IAVTIPRMTLKTFRKLM 186 Query: 193 QLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 + S Y PD RRR ++ + EIN++T +R+ K GR+ I F+ Sbjct: 187 GVEDSLYVNFPDLRRRVIEPAMKEINTKTDLRIEIEYIKDGRKILGIQFT 236 >UniRef50_A9M4V2 Replication initiation protein RepB n=1 Tax=Vibrio sp. 0908 RepID=A9M4V2_9VIBR Length = 345 Score = 98.4 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 90/250 (36%), Gaps = 36/250 (14%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSD-----GTLQEHDGICEIHVAKYAEIFGL 73 +S+ L + SLS + + L + ++ K E + F + Sbjct: 32 KKSHALVFSRLSLSPVEHDIFALLLSRLHKDQWEDFMAGKTPMSPSYEFKSKVLCDWFCV 91 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + + + + AGK++ + ++ P F + + G ++ N Sbjct: 92 EKEDLYNILYKPSERLAGKKIGV------TQEGNSFDFIPLFKRVKY--QNGTLTIKPND 143 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 LI ++G+ Q ++I + RLY LC+++ P + + I+ + + Sbjct: 144 ELITEYLGISQGHAQIPHKSFRKIKTEHGKRLYTMLCRFKSP-HTELHPQTIEDLHGFFG 202 Query: 194 LPQS--------YQRMPDFRRRFLQVCVNE-----------INSRT-PMRLSYIEKKKGR 233 L Y +F +R ++ + E I+ +T SY K+GR Sbjct: 203 LLDKKGTLLKKTYAVNANFIKRIIKPAIQEIDDKEPSICFLIDEKTGNYGFSY--IKEGR 260 Query: 234 QTTHIVFSFR 243 + + F F+ Sbjct: 261 KVVGLKFLFQ 270 >UniRef50_B4RHW9 Replication initiator protein n=2 Tax=Alphaproteobacteria RepID=B4RHW9_PHEZH Length = 361 Score = 97.6 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 62/220 (28%), Gaps = 19/220 (8%) Query: 29 YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKS 88 SLS R+L L + H ++ + + ++ I L+ Sbjct: 30 QSLSLTASRLLALMILTAGGDAWRPVAH----KMRKSDIR-----RGHKGNERIADMLEE 80 Query: 89 FAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR-----GLYSVHINPYLIPFFIGLQ 143 + K + FP G P Sbjct: 81 LHRTLFAI--DDLSWRGRKATKRFPLIQSSREEVEEDGGERGWIEWEFTPDARRLIKE-S 137 Query: 144 NRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL-PQSYQRMP 202 + + YA+RLYE + R + + + + P+ Y+ Sbjct: 138 ETYAVLNRQAVLGFRSTYALRLYE-MGALRIHRRQSTWRGDMTALRAAFGIAPELYKDFA 196 Query: 203 DFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 RR+ L+ EI+ + + E ++GR I F F Sbjct: 197 QLRRKVLERAKAEIDQLAHFTVDWREIRRGRAVVEIEFFF 236 >UniRef50_C2F289 Replication initiator protein n=6 Tax=Lactobacillus RepID=C2F289_LACRE Length = 276 Score = 97.6 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 97/253 (38%), Gaps = 17/253 (6%) Query: 5 AVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHV 64 I++ + + + Q+NDL + +L+ + ++L ++ D D + + Sbjct: 29 KTISNLLSRQNYLVTQANDLARSFGNLTTFEHKVLDYCFSFVKAED----TSDHTYTVQM 84 Query: 65 AKYAEIFGLTSA-EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 GL S+ + + + +A ++ K ++ R ++ + G F Sbjct: 85 IDIIRHLGLNSSGKNYQRVGEAFRALNTKTAIYLRTYKNGMN--GILMTSLFDYIEIVED 142 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYES-----LCQYRKPDGS 178 G + + PF L+ + F+LSE + + Y + L + + + +K Sbjct: 143 -GKIEFQFSKKVAPFVFELKQNYYSFKLSELATVRSKYTLTLLKLWNANSMGKLQKATIR 201 Query: 179 GIVSLKIDWII--ERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSY-IEKKKGRQT 235 G ++ W + + P+ + FR+R L V + E+ P + Y +KKGR+ Sbjct: 202 GSITEWQSWFLGTDDDGKPRKWSA-GRFRQRVLGVSLKELGELYPKTIFYLTTEKKGRKV 260 Query: 236 THIVFSFRDITSM 248 + + Sbjct: 261 VGYTLDITPVKTT 273 >UniRef50_C3Q8A6 RepA n=20 Tax=Bacteroides RepID=C3Q8A6_9BACE Length = 343 Score = 96.8 bits (240), Expect = 5e-19, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 92/258 (35%), Gaps = 42/258 (16%) Query: 13 KNSPRIVQSNDLTEA-------AYSLSRDQKRMLYLFVDQIRKSDGTLQEHD-------- 57 K I ++ D+ + +S ++R++ ++ + ++ D Sbjct: 2 KKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAELKGVKLKDYAGTKRKF 61 Query: 58 --GICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWF 115 G+ ++ + + S +I AL S AG+ + EE + + Sbjct: 62 EHGLWDVDAQMHVSDV-IFSGRDYNEIIAALDSLAGRFFTYEDDEE-------WWKCGFI 113 Query: 116 IKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKP 175 + G+ + ++ L F + +F L++ + Y++R Y + P Sbjct: 114 SNPKYKKHTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRFYMLMSGQVYP 173 Query: 176 DGSGIVSLKIDWIIERYQLP-QSYQ------RMPDFRRRFLQVCVNEINSRTPMRLSYIE 228 + + +D + ER +P Y+ R+ +F R L+ ++ P +Y++ Sbjct: 174 -----LDISLDNLKERLGIPADKYKDKNGKDRIDNFEERVLKPAKAALDESCPYTFNYVK 228 Query: 229 KKKG-----RQTTHIVFS 241 ++ + T F Sbjct: 229 VRENPNNKRSKVTGFRFY 246 >UniRef50_B6J9Q7 Plasmid replication initiation protein n=12 Tax=Legionellales RepID=B6J9Q7_COXB1 Length = 438 Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 82/218 (37%), Gaps = 11/218 (5%) Query: 25 TEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQ 84 + +L+ Q+++ + H +I V ++ G S + ++ Sbjct: 29 IHCSNNLTLVQRKLFNALLFNAYPE----LPHKPKFQISVKDLCKLIGYNSND-YGKLKM 83 Query: 85 ALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQN 144 AL + + G EK +++ + G+ + + + Sbjct: 84 ALLGLITTAIEWNLINCGTGKEKNWKASSILSAAQ--LAEGVCTYEYSHIMKELLFQ-PE 140 Query: 145 RFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ-LPQSYQRMPD 203 + + + + + Y + LYE+ +Y++ + +D + L Y D Sbjct: 141 IYGRIDVKTMSKFKSSYGLALYENCIRYQRLSQTPW--FPLDVFRKLMGVLGGKYTSFKD 198 Query: 204 FRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 F++R L + VNE+N+ + +++ +++ ++ T I F Sbjct: 199 FKKRVLNIAVNEVNNLSQIQVLPEIERQNQKVTKIRFK 236 >UniRef50_O87353 Replication protein Rep n=2 Tax=Staphylococcus RepID=O87353_STAAU Length = 211 Score = 95.7 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 5/138 (3%) Query: 106 EKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRL 165 E + F F K S + +P L + + FT+F L E + + Y+ + Sbjct: 11 ETKIKKFVLFYKYEIDISEKYLEIATSPDLKYILNSITDNFTKFELKEMTHLKSTYSKNM 70 Query: 166 YESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINS-RTPMRL 224 + L QY+ +G + +KI+ ER +P+SY RM + + L + E++ + + + Sbjct: 71 FRLLKQYKH---TGYMKIKIEDFRERLDIPESY-RMSNINQFVLTPIIKELSPIFSNLNI 126 Query: 225 SYIEKKKGRQTTHIVFSF 242 + ++ KKGR+ + F+F Sbjct: 127 NKVKAKKGRKIEWLEFTF 144 >UniRef50_Q1CR19 Replication initiation protein A n=18 Tax=Helicobacter RepID=Q1CR19_HELPH Length = 543 Score = 95.7 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 91/237 (38%), Gaps = 26/237 (10%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDI----RQA 85 LS + +L+ +++ + + + + + S ++ + + Sbjct: 113 KLSEREANLLFAIFQRLK------DQGNTLIRFEPQDLKRMIMVKSNLTNRQLLQILKNL 166 Query: 86 LKSFAGKEVVFYRPE----EDAGDEKGYESFPWFIKRAHSPSR--GLYSVHINPYLIPFF 139 L + G R E D Y F F R H P++ V +N Sbjct: 167 LDNIGGANFWIIREHVENGEIYEDHTSYMLFKQFEIRIHKPTQTIEYLEVQLNDSYQYLL 226 Query: 140 IGLQ--NRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 L ++T F+L E + + YA LY L QY+ +GI+S++ E +P+ Sbjct: 227 NNLGMGGQYTSFKLLEFQRVRGKYAKTLYRLLKQYK---STGILSVEWSQFRELLDIPKD 283 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPM-RLSYIEKKKG---RQTTHIVFSFRDITSMTT 250 Y+ M + ++ L E+ P LSY +++K R+ THI F F + T Sbjct: 284 YK-MENIDQKVLTPAFKELRKIYPFEHLSYKKERKSHDKRKVTHIDFYFEQLPQGET 339 >UniRef50_C5B575 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B575_METEA Length = 363 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 72/224 (32%), Gaps = 15/224 (6%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 L+ +++ + + + H + V + G A D+ +L+ Sbjct: 34 DLNIADQKLFDYLLWLAHDALTSRPVHS----VAVRDVLQYLGSGVRLA--DLEDSLRRL 87 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 V + + G +P L+ F + + Sbjct: 88 GNVNVEITYKNDGQEHT---VFVHFLSADLCRAENGELRYAFDPILLTFLNQ-PSVYAAI 143 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 + + A RLYE Y K + + +D + + Y R +FR++ L Sbjct: 144 NMMHVRSFRRIGAKRLYEHALLYVKRYH-PVWQVPLDDLRRVCDVSDGYPRFDNFRKKVL 202 Query: 210 QVCVNEINSRTPMRLSYIEKKKG--RQTTHIVF--SFRDITSMT 249 + V E+N+ L Y E G R+ THI F + +T Sbjct: 203 EPAVAEVNAIAGFVLEYKEVTAGDSRKVTHIRFEPRLKTKDELT 246 >UniRef50_A4JWE3 Initiator RepB protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JWE3_BURVG Length = 402 Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 13/219 (5%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 SLS +++++ + + T +EH E G S+ K + +A ++ Sbjct: 39 SLSLVERKIVNVLLLHAYDDLLTKREHTMSVRF----LCEAIGWDSSNDHKKLAEAAENI 94 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 V + + + ++ G + +L F Sbjct: 95 MRNIVTVNMFSDGSEE---WKKTALVSSVGV--KNGRVTYAYIEWLAERLAR-PEVFAAI 148 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS-YQRMPDFRRRF 208 + + + YA+ LYE+ +++ + +D E Y+ F Sbjct: 149 DIKIQRRFKSGYALALYENCIRFKGVGQTRYA--PVDTWKEILGATGKMYEEYRHFSNHV 206 Query: 209 LQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 L+ + EIN + + KK GR+ I F ++ Sbjct: 207 LKTAIKEINDVADIDVDLRVKKDGRRIVEIQFGVKEKAQ 245 >UniRef50_Q1ENI4 RepB n=2 Tax=Lactobacillus RepID=Q1ENI4_LACPL Length = 270 Score = 94.9 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 13/230 (5%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + +VQ NDL A +LS + R+L + K D ++ Sbjct: 18 SRQDYLVVQGNDLARAFGNLSAFEHRVLDYCFSFVTKDSK----PDEEYSVNAIDILHHL 73 Query: 72 GLT-SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 GLT S + + +A K+ K ++ R EE+ KG F + G Sbjct: 74 GLTASGRDYERVAKAFKALNEKTALYLRIEENG--VKGIRMTQLFSHIDFFQN-GSVKFL 130 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK---IDW 187 + P+ L+ + F+L E + + Y++ + + L + + G V++K DW Sbjct: 131 FSTESAPYIFDLRKNYYSFKLRELARVKSKYSLIMLK-LIEANQIGGQNPVTIKGAMEDW 189 Query: 188 IIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 + + F R + V ++E+ + + + K R Sbjct: 190 QGWFLGANRRWPA-GRFMRDTINVAIDELYQKMGLVFTVTTLKHKRSVVG 238 >UniRef50_B6YSB4 Replication protein A n=2 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YSB4_AZOPC Length = 328 Score = 94.2 bits (233), Expect = 3e-18, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 79/231 (34%), Gaps = 20/231 (8%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEA 78 +QS L+ + S +K +LY V+ I+ + + + L E Sbjct: 27 IQSYLLSASKRPFSEGEKNVLYRLVECIQLDKEDQHMDSFLRKNPNGEVDIALFLKDGED 86 Query: 79 SKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPF 138 I+++L + + + E + + +K S S ++ + + Sbjct: 87 LMQIKKSLDELQKRTIHY-------EAEGVWTTIHLLLKPRMSQSNRTVTLRLYQEVYEA 139 Query: 139 FIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSY 198 + L + L + Y R YE L + ++ I + Y Sbjct: 140 LLHLPYKEQMKELEAIMSFRSIYTKRFYELLKGQNNS-----IHYNMENIRTLLGVENKY 194 Query: 199 QRMPDFRRRFLQVCVNEINSRTPMRLSYI---EKK---KG--RQTTHIVFS 241 ++ +F R + + E+N + +Y EKK KG ++ I+ + Sbjct: 195 KKTNNFLTRVIDTAMKELNQKGTFSFTYQLEYEKKHNPKGGNKKVIGIIIT 245 >UniRef50_C8KXR0 Replication protein n=1 Tax=Actinobacillus minor 202 RepID=C8KXR0_9PAST Length = 323 Score = 92.6 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 37/236 (15%), Positives = 82/236 (34%), Gaps = 25/236 (10%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGT----LQEHDGICE 61 + K R++ N+L + L++ QK +++ + I++ D LQ Sbjct: 7 IAKQNKALAEQRVIFRNELNTYSSKLTKLQKSLIFFALSSIKQEDRDNLSALQLSQKPIL 66 Query: 62 IHVAKYAEIFGL---TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIK- 117 I V + + + KDI + K + + + + ++ K Sbjct: 67 IKVQDFLTVCNIDPKKQKNIYKDIETEILDLQKKPITYVDKHGAVHNISWFTKTSYYSKE 126 Query: 118 --------------RAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAM 163 Y ++ + + L++ F + + N Y+ Sbjct: 127 SVRNYNDDDLIKKDLKFLDGHSYYLIYFTSEIANHLVKLKSNFMSYSFLISHNFDNKYSA 186 Query: 164 RLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSR 219 R+YE L +++ SG + + + + R LP+SY + L+ +IN + Sbjct: 187 RIYELLQEHKN---SGRICVPMKDFVSRLALPKSYMVRSQLKHYVLEKVKEDINGK 239 >UniRef50_UPI0001979AA2 putative pNL871104_p1 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001979AA2 Length = 373 Score = 92.2 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 95/240 (39%), Gaps = 19/240 (7%) Query: 10 KKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRK-SDGTLQEHDGICEIHVAKYA 68 K P IVQ ND + A +++S + ++L + + + E E+ + A Sbjct: 20 KIDLKRPVIVQLNDFSYARFNMSVSEFKILLAMLATLDSVNQSEFIEQ----EVTTRELA 75 Query: 69 EIFGLTSAEASKD-IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLY 127 EI ++ + ++ A K + + + + P+F + Sbjct: 76 EILQHEKNINNESYLYDIMQKLAEKTYF-------SDNGESAIAVPFFKYIKKQDDKAFL 128 Query: 128 SVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW 187 N L PFF+ L+ F +F +E K++ + Y++RLY L + + ++ + Sbjct: 129 KFKFNDTLKPFFLELRRGFVKFNYTEIKDLRSFYSIRLYIMLLTELRQNRQCLI-IDYKT 187 Query: 188 IIERYQLP---QSYQRMPDFRRRFLQVCVNE--INSRTPMRLSYIEKKKGRQTTHIVFSF 242 + + LP + F ++ L + +N+ L +K G++ ++F+F Sbjct: 188 LCDTLGLPRHRAERKDFGVFNQKILTNFRKDMLLNAFNVELLDIQTEKVGKKVDELIFTF 247 >UniRef50_A9M546 Replication initiation protein n=19 Tax=Vibrio RepID=A9M546_9VIBR Length = 358 Score = 92.2 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 29/250 (11%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 I + + L + LS + M L + ++ +D E + +E G+ S Sbjct: 17 KHIKKGHQLVFSRQDLSAREADMFALMIAHMKAND--WDRSTPHYEFTSHQLSEWLGVES 74 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 ++ A +++ E + ++ P F A+ G ++ N L Sbjct: 75 KHIGSNLSPVANRLASRKIGIKV--ETGKGDIEFDYRPLFKHIAY--KNGTLTMVPNDML 130 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 +I F ++ Y+ RLYE L +++ K+D + + L Sbjct: 131 KSEYIEYNQGFALINTRNFFDVKKEYSKRLYELLSRFKDKGFEMHQQ-KLDELKGVFGLL 189 Query: 196 Q----------SYQRMPDFRRRFLQVCVNEINSRTPMRLS------------YIEKKKGR 233 S++ F +R ++ + E+ +R + KKGR Sbjct: 190 DEAGKLKKDKSSFKNNSVFMKRCIRESIKELTEHPQIRKELLFLEGENGEKGFEVIKKGR 249 Query: 234 QTTHIVFSFR 243 T I F FR Sbjct: 250 TITGIKFLFR 259 >UniRef50_C6BQ44 Initiator RepB protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BQ44_RALP1 Length = 419 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 14/215 (6%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 LS Q+R+ V ++ Q ++ +++ + G + + + L S Sbjct: 25 LSVLQQRLFNSCVYFAQR-----QPEFHSWKVLISELEHVIGYKDSSNRRYVMGELLSLM 79 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 + VV+ ++ + H + + +P L + + + Sbjct: 80 KEHVVW--DATTNPLDRKISASTLLADVTHLVDQKAFEFSFSPKLREALLD-PKIWQRIN 136 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY-QLPQS---YQRMPDFRR 206 L ++ + + LYE +Y + + S + + S Y FR Sbjct: 137 LLISQRFRSMGSGPLYEWCKRYERTGITSRWS--WEDFRHAVVGIIDSDSIYAEFKHFRA 194 Query: 207 RFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 + L + E+N T + ++ I K GR + I F Sbjct: 195 KVLNRAIAEVNELTDIEVTLILHKVGRVVSQIQFK 229 >UniRef50_C9NQ31 Replication protein n=3 Tax=Vibrio RepID=C9NQ31_9VIBR Length = 375 Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 99/255 (38%), Gaps = 29/255 (11%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 I + ++L + L+ + + L + +++ D Q + A+ +E GL++ Sbjct: 31 KHIKKGHELVFSQQDLTAREANLFGLMIANMKQEDWDNQTPE--YRFTAAQLSEWLGLSN 88 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 ++Q + A +++ ++ + +E P F K + + ++ N L Sbjct: 89 RAIGSQLKQVVGRLASRKIGIIIEKQG---DTEFEFTPLFKKATYKDR--VLTLIPNDAL 143 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL- 194 +I F+ + Y RLYE L +++ DG+ + +++D + L Sbjct: 144 SKEYIEYNQGFSLINTKSFLGLKREYTKRLYEILSRFK-TDGTSLKPIEVDDLRAFMGLL 202 Query: 195 ---------PQSYQRMPDFRRRFLQVCVNEINS--RTPMRLSYIE---------KKKGRQ 234 S++ F R ++ + E++ +T + ++E K GR Sbjct: 203 NEDGSLKANKTSFKNNSVFISRCIKESIEELSEDPKTRKEILFLESEDGLGLKLHKHGRN 262 Query: 235 TTHIVFSFRDITSMT 249 + F +R I + T Sbjct: 263 IHAVEFLYRWINTTT 277 >UniRef50_B2JUN4 Initiator RepB protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JUN4_BURP8 Length = 433 Score = 91.8 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 88/235 (37%), Gaps = 13/235 (5%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 K + + + + LS ++++ + + + D L + V + Sbjct: 7 KEVRTESVKKHVAAIHTSGELSLLERKLSNVLL--LHSYDNLLTT--RTHRLPVRTLMLV 62 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 G T +E ++ +R+AL+ A V F ++ + + P G+ S Sbjct: 63 LGWTESENTEKLREALRQLATTAVEFNVMDDG---RERWSVMPILSFAEI--RTGVCSYR 117 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 + L + + L ++ + +A+ LYE+ +++K +G + L + + + Sbjct: 118 YDEALAEKLYD-PSIYATVNLGVQRKFSKSHALTLYENCLRFQKVGSTGWIELPV--LRK 174 Query: 191 RYQLPQSYQR-MPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 Q Y + +Q V EIN + + + ++ GR T + F R Sbjct: 175 LLGATQEYYDDFRRLNSKVIQKAVKEINDVSDINVEVEYQRMGRSVTGVKFLIRQ 229 >UniRef50_Q8GN68 RepB n=6 Tax=Bifidobacterium longum RepID=Q8GN68_BIFLD Length = 297 Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 76/230 (33%), Gaps = 16/230 (6%) Query: 15 SPRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + SN A +L ++R+ E + + L Sbjct: 3 NEIVKFSNQFNNVALKKFDAVHLDVLMAIASRVREKG------TATVEFSFEELRGLMRL 56 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 +K + D F F K P +V +N Sbjct: 57 RKNLTNKQL---ADKIVQTNARLLALNYMFEDSGKIIQFALFTKFVTDPQEATLAVGVNE 113 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 L ++FT+F L+E ++ + YA Y QYR SGI + D Sbjct: 114 EFAFLLNDLTSQFTRFELAEFADLKSKYAKEFYRRAKQYR---SSGIWKISRDEFCRLLS 170 Query: 194 LPQSY-QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 +P+S +++ D +R L+ + E +++ K R+ + VF+F Sbjct: 171 VPKSTAEQVRDLNKRVLKPIIEECGPLLGLKIERQYVK--RRLSGFVFTF 218 >UniRef50_A1BC50 Initiator RepB protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BC50_PARDP Length = 340 Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 86/254 (33%), Gaps = 15/254 (5%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAY--SLSRDQKRMLYLFVDQIRKSDGTLQEHDG 58 MAE+A+ + R N+ +++ +L + L+ + +R+ ++ ++ H Sbjct: 1 MAESAIRTVEARPNADSLIKPGELVDLIEVTPLTLNDRRIYNQLLENAWEAIDKPVTHV- 59 Query: 59 ICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKR 118 A+ S ++ + ++L+ V + + + Sbjct: 60 --------IAKSALRGSHNSNDRVGESLERLMSAIVKVAVIWDGEPAIERVQLLG--GNL 109 Query: 119 AHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 S GL I L F + + +++ YA+ LYE + + Sbjct: 110 ESGRSDGLLEYEIPARLRKIIRN-SQVFARLQREVMFALSSKYALTLYEMVQKRGNLRWK 168 Query: 179 GIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 ++ + +P+ + + R + V E+N+ + + K GR TH Sbjct: 169 ASERFTLEALRGIMGVPKGKLSSWSNLKLRAIDPAVAEVNALSDYMVEISPIKTGRAVTH 228 Query: 238 IVFSFRDITSMTTG 251 + + +G Sbjct: 229 VEMRWWRKDGDASG 242 >UniRef50_Q68BL4 Replication protein n=2 Tax=Lactobacillus RepID=Q68BL4_LACCA Length = 270 Score = 90.7 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 30/258 (11%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + + Q+NDL + +LS Q ++L + +D + + + + Sbjct: 10 DRQDYLVTQANDLARSLGNLSTFQHKVLDYCFSYVTANDNA----NTVYHLTTLEIIHHL 65 Query: 72 GLT-SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 GL S ++ K + +A K+ ++ R E G G F G Sbjct: 66 GLNTSGDSYKRVVKAFKALNENTAIYMRTTEPDGKH-GILMTSLFAYIKVIDD-GRVEFK 123 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK------ 184 + + PF L+ +F F LSE + + Y + + + Sbjct: 124 FSATVAPFVFQLKRQFYSFHLSELTRVRSKYTL---SMMKLWNANAIGKWRDQNDPSSLP 180 Query: 185 ---------IDWIIERYQLPQSYQRMP----DFRRRFLQVCVNEINSRTPMR-LSYIEKK 230 DW + + F+++ + V + E+ S P ++ + Sbjct: 181 PAATIKGSLTDWESWFLGSDDDGKPIKWPAGRFKQKAIDVAIKELGSLYPQTMINVLRLT 240 Query: 231 KGRQTTHIVFSFRDITSM 248 GR+ FR I ++ Sbjct: 241 HGRRIEGFQIEFRPIRTV 258 >UniRef50_B0ZE01 PI protein n=10 Tax=Gammaproteobacteria RepID=B0ZE01_ECOLX Length = 278 Score = 90.3 bits (223), Expect = 5e-17, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 88/256 (34%), Gaps = 27/256 (10%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 +I N++ SL +R+L++ + QI + I +YA I Sbjct: 7 TKKTKIRHRNEINSTFSSLPLSARRILFMAMAQIDSREEL--SEGATFRITAREYAFIAD 64 Query: 73 LTSAEASKDIRQALKSFAGKEVVF---------------YRPEEDAGDEKGYESFPWFIK 117 + A + +++ + + + + Sbjct: 65 IDVTGAYRQLKEGAEELQASVIRIPRNQLLTPQGNQSSGHTKKRGKLPSDAVRLMNLTAF 124 Query: 118 RAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG 177 + S G + + + P+ L++ +T L + + + + LY+ + + Sbjct: 125 CDYVESEGYIDIAFSHVIEPYITMLKDSYTTQVLISSVRLADQNSNMLYQFIRKQYSSGK 184 Query: 178 SGIVSLKIDWIIERYQL-----PQS---YQRMPDFRRRFLQVCVNEINSRTPM-RLSYIE 228 +++D + + +L + YQ DF + FLQ + +IN T + L Sbjct: 185 KTFFDIEVDVLKDELELFRIDNGEKVYLYQNFKDFNKVFLQKNIEKINQYTEINHLEVKI 244 Query: 229 K-KKGRQTTHIVFSFR 243 + R+ + + FS++ Sbjct: 245 VERVARRASKLRFSYK 260 >UniRef50_C9KLS3 Initiator RepB protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLS3_9FIRM Length = 461 Score = 90.3 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 94/247 (38%), Gaps = 15/247 (6%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 + V K I Q + A Y+LS++Q + YLF+ + + + E Sbjct: 9 LVHRPVFLIPKDTGPMTIAQ--EFATAKYTLSKNQLKAWYLFIASM--DENHVPEQSTTY 64 Query: 61 EIHVAKYAEIFGLTSAEASKD-IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 ++A+ + + +A + + + + +D G++ Y + + + + Sbjct: 65 VFDALRFADKLNIDARKARGMMVAEIFTKLSQNYIDLRSRGDDNGEQDIYHA-NFISELS 123 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNR-FTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 ++ + V I P L + L+ + + + + +MRL+ L R D Sbjct: 124 YNRKTHILEVSIPPRLNQYLFNLREGTYLSMDIEDILALDTIVSMRLFIYL---RNLDCL 180 Query: 179 GIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRT---PMRLSYIEKKKGRQT 235 I L I+ + +F+R+ L + EI +RT + + GR+ Sbjct: 181 NIHELSIERFRSEIGIYPE-SSYKEFKRKVLTGSIEEIRNRTKYKDFFID-DDGGPGRKA 238 Query: 236 THIVFSF 242 T IVF F Sbjct: 239 TTIVFGF 245 >UniRef50_A5VGG8 Initiator RepB protein n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGG8_SPHWW Length = 371 Score = 89.9 bits (222), Expect = 6e-17, Method: Composition-based stats. Identities = 34/240 (14%), Positives = 82/240 (34%), Gaps = 21/240 (8%) Query: 18 IVQSNDLTEAAY---SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + + +L E+ + SLS ++ L + + G D I + Sbjct: 37 VSKPGELVESEFETGSLSAAGRKAFALMLRKAGPDAGE----DRNFTITKKELR-----G 87 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG--LYSVHIN 132 S + ++ I+ + + +V R G G + + Sbjct: 88 SHKGNERIQPVMDELL-RVIVRIRTTTKKGKPAIMSQSLLSSCVEEISEDGMSVVEYEFS 146 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 + + + + L + + Y++ LY+ C + +V ++++ + R Sbjct: 147 EAFKR-VMQRSDYYARVNLGVMLALQSRYSLTLYDLGC-LIINRQNRVVKMEVEELRRRL 204 Query: 193 QLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK---KGRQTTHIVFSFRDITSM 248 +P+ S++ +FRR L EI+ + + E + +GR + +F + Sbjct: 205 GVPEGSFKNFAEFRRDVLAKSKLEIDQLADFTVEWDEIRGSGRGRPVEAVKLTFSPKDPV 264 >UniRef50_D2MK96 Plasmid replication initiation protein n=6 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK96_9BACT Length = 433 Score = 89.1 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 93/240 (38%), Gaps = 17/240 (7%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N +++++ + ++ Q+R + + H + VA+ A G Sbjct: 5 NINEVIKASPAIQVQGKMTHLQRRAWNVLLANAYNELPDKDIHS----VGVAELASKLGY 60 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 S + +++ L++ +V + ++D ++ G+ + + G+ + P Sbjct: 61 ESNDL-DYLKETLEALGSCQVKWNLLDKDKKEKWGFANLL----ASADIKDGICTYAFAP 115 Query: 134 YLIPFFIGLQNR--FTQFRLSETKEITNPYAMRLYESLCQYRKPD-GSGI-VSLKIDWII 189 +L P L N +T+ L + + YA+ L+E Y D G+G + + Sbjct: 116 HLRP---KLHNPRIYTKLNLRLQNQFKSQYALILWEVCFDYFDTDRGTGETPFIPLGTFK 172 Query: 190 ERYQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 E L ++ Y R ++ + EIN+ T + K+ GR+ + F + + Sbjct: 173 ELMGLDETDYPVFKVLSRDVIKSALKEINALTDYHIEVEHKRLGRRVAELKFHITRVKQL 232 >UniRef50_UPI0001BCE2A8 replication protein B n=1 Tax=Campylobacter fetus subsp. venerealis str. Azul-94 RepID=UPI0001BCE2A8 Length = 267 Score = 89.1 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 14/203 (6%) Query: 15 SPRIVQSNDLTEAAYS-LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + NDL + LS +Q +L+ ++ + I + + + E+ G+ Sbjct: 2 NEVVKYHNDLNNISLGGLSENQINILFTLFAKVE------NKSTEILKFPINQIIELSGI 55 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 ++ KD +A + + D+ G F + R SV ++ Sbjct: 56 STTN--KDYLEAT--IFSQFDKLQNLKIRYNDDDGTAQEVIFPRVHIDKKREFLSVRVSE 111 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 F L N FT+F L+E ++ Y +Y L QYR +GI ++ + E Sbjct: 112 AFAYIFNSLMNNFTRFELAEFVNLSGKYTKTIYRLLKQYR---STGIFKIEFERFKEILD 168 Query: 194 LPQSYQRMPDFRRRFLQVCVNEI 216 +P+SY+RM D L+ + E+ Sbjct: 169 IPKSYKRMSDIESDILKPAIKEL 191 >UniRef50_UPI0001BCE2AC putative RepE n=1 Tax=Campylobacter fetus subsp. venerealis str. Azul-94 RepID=UPI0001BCE2AC Length = 352 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 22/245 (8%) Query: 11 KRKNSPRIVQSNDL-TEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAE 69 ++K + NDL A S S+ + + + + +++ + + + A+ E Sbjct: 3 RQKPKQLVKYHNDLNLIAFKSFSKVENDVFFALMWKLK------NQANKEIRLDFAELRE 56 Query: 70 IFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSV 129 + L + K+I +++ K + E + E+ + + + Sbjct: 57 LIDLRNMTN-KEIEKSISDIGRK-ISSSLIEFETETERQFFTIFQVLAVPKDTDDFYIRA 114 Query: 130 HINPYLIPFFIGLQNR-FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 IN + + FT + L E +T+ Y LY L Q+R I D Sbjct: 115 KINEPFLYILNNFEKGGFTMWELIEFSNLTSKYTQTLYRLLKQFRSTGTVTIFENDWDKF 174 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMR--------LSYIEKK---KGRQTTH 237 +E +P+ Y M D +R L + E++ +T L Y +K+ KGR Sbjct: 175 VEIMDIPKGYA-MSDIDKRILTPAIKELSEKTLFSTDRVIFENLKYEKKRGRSKGRPVVG 233 Query: 238 IVFSF 242 I F F Sbjct: 234 IEFRF 238 >UniRef50_B2TSF7 Replication initation protein Pi n=2 Tax=Enterobacteriaceae RepID=B2TSF7_SHIB3 Length = 290 Score = 88.4 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 30/253 (11%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 ++ N+L +L K++L+L + QI + +H I + VA Y + + Sbjct: 15 KVRHRNELNSTLSTLPMAAKKVLFLAMCQINSKNEFDDDH--IFYVTVADYIKWVQVKPD 72 Query: 77 EASKDIRQALKSFAG-----KEVVFYRPEEDAG------DEKGYESFPWFIKRAHSPSRG 125 A +R K D G + + + + + G Sbjct: 73 AAYLALRDGSNILDTTLLKLKHDEILELSSDLGFKFTKSNVPDSMNLSLTVFSTYYRNEG 132 Query: 126 LYSVHINPYLIPFFIGL---QNRFTQFRLSETKEITNPYAMRLYESLCQ-YRKPDGSGIV 181 + F L + R+T L +T+ A LY+ + + Y + Sbjct: 133 RVGIKFTKEAKRFLCKLIGEEKRYTTQVLLSVVRLTSVNAASLYQLIRKIYSNNSRANSF 192 Query: 182 SLKIDWIIERYQLPQ---------SYQRMPDFRRRFLQVCVNEINSRT---PMRLSYIEK 229 + ID + + L Y P F+R L V EI T + E Sbjct: 193 EMTIDELKDELNLYTIGAGGVKDYKYPDYPAFKRDVLNKSVKEIMKHTEVKNLSFVVSE- 251 Query: 230 KKGRQTTHIVFSF 242 K GR+ + FS+ Sbjct: 252 KIGRKVYKLKFSY 264 >UniRef50_B0S461 Replication protein n=1 Tax=Finegoldia magna ATCC 29328 RepID=B0S461_FINM2 Length = 292 Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 81/216 (37%), Gaps = 21/216 (9%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEA---SKDIRQAL 86 + + + +L ++++ + D I +I + S + +D++ Sbjct: 36 NFNATELNILMYLCSKLKR------QRDKIIDISFEDIKTLTKYGSKDKERFIEDLQSTN 89 Query: 87 KSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRF 146 + + + ++ F S S+G +V +N + +F Sbjct: 90 RKLLDCKFSYETEDDLID-------LVLFTTFKISKSQGKLTVRVNDDFLFLLNDFTEQF 142 Query: 147 TQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRR 206 T+F L+E ++ + Y Y L Q+ +G + ID +P SY RM D R Sbjct: 143 TRFELNEFVDLKSSYTKECYRRLKQF---SDTGHWYVSIDRFRYELDIPDSY-RMYDIDR 198 Query: 207 RFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 R L+ E++ I+KKKG + + F F Sbjct: 199 RVLKPIKEELSELFDY-FKIIKKKKGNKVIGLQFDF 233 >UniRef50_Q52180 RepA n=1 Tax=Lactobacillus acidophilus RepID=Q52180_LACAC Length = 282 Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 77/216 (35%), Gaps = 19/216 (8%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + + + + V ++R + E+ + + + + L+ Sbjct: 19 HFNARELNLFFSIVSRMRDKGTEK------VSFTFNELHELSRYSDHG--ERLVKDLEGV 70 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 K +D + + FP F + +V INP L L N T+F Sbjct: 71 YTKMQNLNMWYDDGNIIEHWVLFPGFQI---NRKETTVTVSINPELKSVLNQLSNW-TRF 126 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 L + + + Y+ L+ L QYR G + + +P+SY + D ++ + Sbjct: 127 SLEQFASLKSTYSKTLFRLLKQYRTV---GKRNFSMQEFRNLLDIPKSY-SVSDIDKKVM 182 Query: 210 QVCVNEINSRTPMRLSYIEKKKGR--QTTHIVFSFR 243 E+ + LS + +KGR + F+++ Sbjct: 183 TPFKKEL-AGIFYGLSIRKLRKGRGGKIVGYTFTWK 217 >UniRef50_C6BQP5 Replication protein n=3 Tax=Ralstonia RepID=C6BQP5_RALP1 Length = 435 Score = 87.6 bits (216), Expect = 3e-16, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 14/217 (6%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA-EASKDIRQALKSF 89 LS Q+R+ + + +E + ++ + + LT+ A I++ KS Sbjct: 41 LSLQQRRIFNALIKNAIEQRLAGRETNNTFQVSIPQMMAALDLTTKDNAY--IKETAKSL 98 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 ++ D + I A + S P + + R+ Sbjct: 99 MR---TVVDWDQLNSDGTSTWTGSTLIAGAKIVG-SVLSYSFAPQISEELLD-PQRYAMI 153 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE----RYQLPQSYQRMPDFR 205 + K Y++ L+E+ ++ + + + + R + Y+ F+ Sbjct: 154 DMRIAKLFRRSYSLALWENTVRFERIGLTA--RIPLATFRNLILGREESETKYKEYKIFK 211 Query: 206 RRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 R L + EIN + + IE K GR I F Sbjct: 212 RAVLTPSIAEINDVSDHEIELIEHKVGRTVGEIQFKI 248 >UniRef50_C7C2U9 Plasmid replication protein n=1 Tax=Staphylococcus aureus subsp. aureus ST398 RepID=C7C2U9_STAAU Length = 271 Score = 87.2 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 73/211 (34%), Gaps = 15/211 (7%) Query: 34 DQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKE 93 + + + + ++R D + E+ + K +A+ + K Sbjct: 22 VEMNIFFGIIAKLRDKD------TRKIIFSTDELREMTDTAGNKNLKRWNKAMIDVSQKV 75 Query: 94 VVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSE 153 E DE+ Y F + ++ ++ + L FT + L E Sbjct: 76 SQLNYYYE---DEERYVLMMLFSMFEVNKKEQTLTIQVSEHFDYVLNQLNATFTSYELRE 132 Query: 154 TKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCV 213 E+ + Y+ +Y L Q+R G +D +P+SY + R+ + Sbjct: 133 FTELRSSYSKSMYRLLKQWRTV---GKKRFSVDEFSILLDVPKSYSK-GMIDRQIINPIT 188 Query: 214 NEI-NSRTPMRL-SYIEKKKGRQTTHIVFSF 242 E+ N +++ E +G TH F++ Sbjct: 189 EELSNFFNNLKVKKIKENTQGNPITHYEFTW 219 >UniRef50_P03067 PI protein n=4 Tax=root RepID=PIR_ECOLX Length = 305 Score = 87.2 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 89/260 (34%), Gaps = 38/260 (14%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 +I N+L L KR++Y+ + I E + +I A + + Sbjct: 11 KKTKIRHRNELNHTLAQLPLPAKRVMYMALAPI--DSKEPLERGRVFKIRAEDLAALAKI 68 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPE-----------EDAGDEKGYESFPWFIKRAHSP 122 T + A + +++ K ++ + A + A+SP Sbjct: 69 TPSLAYRQLKEGGKLLGASKISLRGDDIIALAKELNLPFTAKNSPEELDLNIIEWIAYSP 128 Query: 123 SRGLYSVHINPYLIPFFIGL---QNRFTQFRLSETKEITNPYA------MRLYESLCQYR 173 G S+ + P+ L +N+FT L+ + +++ Y+ +R Y Sbjct: 129 DEGYLSLKFTRTIEPYISSLIGKKNKFTTQLLTASLRLSSQYSSSLYQLIR-----KHYS 183 Query: 174 KPDGSGIVSLKIDWIIERY---------QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRL 224 + +D + E + Y P F+R L + EI +T + Sbjct: 184 NFKKKNYFIISVDELKEELIAYTFDKDGNIEYKYPDFPIFKRDVLNKAIAEIKKKTEISF 243 Query: 225 S-YIEK-KKGRQTTHIVFSF 242 + K+GR+ + + F F Sbjct: 244 VGFTVHEKEGRKISKLKFEF 263 >UniRef50_D0DD73 Initiator RepB protein n=2 Tax=Rhodobacteraceae RepID=D0DD73_9RHOB Length = 342 Score = 86.8 bits (214), Expect = 5e-16, Method: Composition-based stats. Identities = 24/213 (11%), Positives = 65/213 (30%), Gaps = 13/213 (6%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 L+ +R+ ++ + H I + S ++ + + ++ Sbjct: 38 LTLADRRIYNQLLENAWDAIDKPVTH----VISKSDLR-----GSHNSNDRVGETIERLM 88 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 V + + + + GL I L F + + Sbjct: 89 SAIVKVRVTRDGEDAIERVQLLG--GNIETTRRDGLLEYEIPQRLRRIIKD-STVFARLQ 145 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFL 209 +++ YA+ LYE + + ++ + + + + + R + Sbjct: 146 REVMFALSSKYALTLYEMIQKRGNLRYRSSEKFSLEDLRGILGVSKGKLTSWSNLKLRAI 205 Query: 210 QVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 + E+N+ + + K GR+ TH+ + Sbjct: 206 DPALAEVNALSDYVVEIAPLKTGRRVTHVELRW 238 >UniRef50_D0I2S1 Replication protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I2S1_VIBHO Length = 353 Score = 86.1 bits (212), Expect = 9e-16, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 89/261 (34%), Gaps = 35/261 (13%) Query: 9 HKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSD-----GTLQEHDGICEIH 63 + +S++L + LS + M+ LF+ ++ K H Sbjct: 15 NPNELPQQFFKKSHELVFSQLGLSAREHDMMALFLSRLHKDHWTDFLEKRDIHAPRYTFS 74 Query: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 E FGL+S + +R + +G++V +E D P F + + Sbjct: 75 SDVLKEWFGLSSKQLYPTLRPVAERLSGRKVGVNNDKEQEFD-----FIPLFARVKYQKG 129 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 S+ N LI +I Q + + + ++ RLY L +++ + Sbjct: 130 E--LSIVPNSELINAYIDYSAGHAQINHKAFRSLKSEHSKRLYTLLSRFKDKGT--LHPQ 185 Query: 184 KIDWIIERYQ--------LPQSYQRMPDFRRRFLQVCVN----------EINSRTPMR-- 223 I+ + Y L SY++ F R ++ + EI T Sbjct: 186 SIETLHGLYGLLDEKGQLLKNSYRQNKVFIDRCIRKPIKEMMDCPEVSREIEFHTDAETG 245 Query: 224 -LSYIEKKKGRQTTHIVFSFR 243 + + +GR+ I F +R Sbjct: 246 NVGFAPVMRGRRMVAIQFLYR 266 >UniRef50_A3PQH1 Plasmid replication initiation protein n=18 Tax=Rhodobacterales RepID=A3PQH1_RHOS1 Length = 437 Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 87/235 (37%), Gaps = 16/235 (6%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + ++ + L+ Q+++ + + T +H I + G S + Sbjct: 33 VKKNVAAIHVSGKLTLLQRKLSNVLLLNAYDHLITRPKHA----IDARTLCLMIGYNSND 88 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLY-SVHINPYLI 136 + ++ +L+S A E D D+KG + + +++ G +P L Sbjct: 89 M-ETLKASLRSLAE-----TVAEWDMLDQKGRQEWGVSSLLSYAKLSGGICEYAYSPALA 142 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 F L+ + T+ +A+ LYE+ ++ + +G ID + Sbjct: 143 EKLHD-PKVFALINLNIQRRFTSGHALALYENCFRFVRTGSTGWW--PIDIFRRLMGVDD 199 Query: 197 S--YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 S Y+ + ++ V E+N + + ++ +K R T + F ++ + Sbjct: 200 SAYYENFKQLNAKIIKPAVAEVNKSSNIIVTPEFRKMARAVTDVRFLIKENPQLA 254 >UniRef50_A2SMS3 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SMS3_METPP Length = 440 Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 88/239 (36%), Gaps = 14/239 (5%) Query: 19 VQSNDLTEA--AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 ++ ++ A LS +++ + Q+ D EI ++ A++ G S Sbjct: 38 KKAVEIVHALPRQGLSLLSRKVGNCLLRQVVNVGPR---DDAWYEIGISPLAQMAGFDSK 94 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 + + ++ AL++ G + +G+E+ F P G+ +NP L+ Sbjct: 95 DFAH-LKSALRALMGLVFE-WDVVTPVTKRRGWEAASLFPNVKIPPGAGVVRFQVNPELL 152 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL-- 194 P + + ++ + ++ L+E ++ + + + + + Sbjct: 153 PLIVK-PEVYALIDMAVVRRFRRTASLALWEHCVRFERVGATS--EVPWQTLRDILLGQS 209 Query: 195 --PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 ++Y F+ + L + EINS + ++ GR + I F+ R T Sbjct: 210 ADSKTYNEFKYFKAKVLAPAIREINSESNHQVEMRMNYVGRFVSTIAFTIRPKAEATDS 268 >UniRef50_Q9EZ86 Replication protein B n=7 Tax=Campylobacter RepID=Q9EZ86_CAMJE Length = 345 Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 87/242 (35%), Gaps = 39/242 (16%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 S + ++ +L+L +I++ + D + ++ + + + + + + + S Sbjct: 18 SFTEQEQNLLFLIFARIKE-----KGIDNVINLYANDFK--INEKLSNSREYLTENINSL 70 Query: 90 AGKEV------VFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL--------YSVHINPYL 135 K + E +P G ++ INP Sbjct: 71 KYKFFKANFNQIIETKTEVIHKYVNLFETMEIHYVKRNPDDGYDESTLFNRITLKINPDF 130 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 L FT F L E ++ YA LY L Q+R +G + D + +P Sbjct: 131 AYLVNQLTTNFTAFELEEFIALSGKYAKTLYRLLKQFR---TTGKAYFEWDEFCKVMDIP 187 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPM---------RLSYIEKKK-GR----QTTHIVFS 241 Q Y++ + + L+ + E++ + L+Y ++K GR + + I F+ Sbjct: 188 QDYRQ-SEVDKWILKPAIKELSKERNLFDQIRVPFKNLAYEKEKTAGRGRGGKVSGITFT 246 Query: 242 FR 243 F+ Sbjct: 247 FK 248 >UniRef50_C9N206 Putative replication protein rep n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9N206_9FUSO Length = 320 Score = 84.9 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 81/216 (37%), Gaps = 17/216 (7%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + + ++ +L ++++ H K ++ + ++ I+ L+S Sbjct: 30 NFNANELDILMAICSRMKEKGEE------EITFHFDKLKKLINYSDNTSATFIKD-LEST 82 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 K + GDE+ + F F + + + +N L FT F Sbjct: 83 YDKLISIKLK---VGDERRFIKFVLFTRYSVDVDEKTVEIAVNKEFAWVLNELNVTFTAF 139 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 L E + + YA Y + Q++ +G ++ ++ +P +Y RM D L Sbjct: 140 ELKEFISLKSSYAKEFYRRMKQFK---STGKWNISLEDFKRIMDVPVNY-RMCDIDVWVL 195 Query: 210 QVCVNEINSR--TPMRLSYIEKKKGR-QTTHIVFSF 242 + E+ + ++ Y +K +GR + F+F Sbjct: 196 KPIQKELGDKFKLKIKKIYSKKSRGRPSVSGFEFTF 231 >UniRef50_Q93PC9 MS100, putative replicase RepA n=1 Tax=Microscilla sp. PRE1 RepID=Q93PC9_9SPHI Length = 347 Score = 84.5 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 88/246 (35%), Gaps = 21/246 (8%) Query: 12 RKNSPRIVQSNDLT-EAAYSLSRDQKRMLYLFVDQIRK--------------SDGTLQEH 56 ++ P I QSN L E++Y ++ + +L I ++ Sbjct: 4 KRKIPSIYQSNTLVLESSYMVNSFDRNVLNAIQRNINPFNPSVRDFFANFDWDRQSVPTE 63 Query: 57 DGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFI 116 + + A++F + K + + L + V + A + + + Sbjct: 64 YKEVTLSYDEVAKVFDYRMTD-YKRVDERLNALKNIHVGYKNETVQAEGVFVSDVYHYEK 122 Query: 117 KRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPD 176 R G ++ + + F+ N FTQ +++ + Y+ R Y+ L + + Sbjct: 123 DRKWKVLLGDVAI---KHFLAIFLKEHNGFTQIYFAQSNGLKRKYSKRWYDILSALKTRN 179 Query: 177 GSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTT 236 V ++D I +++ ++Q ++R + EI T + SY K G++ Sbjct: 180 FKRTV-FELDQIKYMFKIEDNWQ-WHHIKQRVIDPAFKEIAQSTDVDPSYEIIKSGKRVV 237 Query: 237 HIVFSF 242 + Sbjct: 238 AVEIYI 243 >UniRef50_Q2T2N9 Plasmid replication protein, putative n=76 Tax=Burkholderia RepID=Q2T2N9_BURTA Length = 484 Score = 84.1 bits (207), Expect = 4e-15, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 74/229 (32%), Gaps = 17/229 (7%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 ++ +++ + + +++D + + + VA A F +++ L+ Sbjct: 61 KITLLTRKLFNVLLAVAQQADDSGDTYRALLSDIVANSA--FDSNDTAL---VKEHLRRM 115 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG----LYSVHINPYLIPFFIGLQNR 145 +V + + + P + + + Sbjct: 116 VSVQVEWSTGTSSQKPGRKWGISTLIADAEILEDPATRRVWVEFSFAPKIKKKLLDPV-Q 174 Query: 146 FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY-QLPQS------Y 198 + + L ++ + + LYE +Y + +W P + Sbjct: 175 YARLSLQFQSQLRSSAGLALYEICVRYLTNPSHLTMREPWEWWRPILSGTPDTEAGDEAK 234 Query: 199 QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + F+R +L+ + E+N+ T + + +E ++GR+ I F + Sbjct: 235 REYKYFKRDYLRPAIAEVNAVTNIFVELVEHREGRRVAEIQFRVSERKQ 283 >UniRef50_C4QRD6 Replication protein , putative (Fragment) n=1 Tax=Schistosoma mansoni RepID=C4QRD6_SCHMA Length = 234 Score = 83.7 bits (206), Expect = 5e-15, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 15/228 (6%) Query: 25 TEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQ 84 + ++ Q+++ + + T I + +A+ GL + + I+ Sbjct: 16 IHIQHQMTLLQRQLWLYLLYRAFPQLKT----QDIYTVSLAELKSYLGLKTNN-HQHIKS 70 Query: 85 ALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA--HSPSRGLYSVHINPYLIPFFIG- 141 L+ + D + + + +P+ P + Sbjct: 71 MLEELVS---IRVEWNIFGKDSQVWGIAALLASCSITVTPNSSTVRYSFAPDIRERLSDP 127 Query: 142 LQNRFTQFRLSETKEITNPYAMRLYESLCQY-RKPDGSGIVSLKIDWIIERYQLPQ-SYQ 199 L + + L T+ + +A+ LY Y R D G + ++ + + L Y Sbjct: 128 LM--YAKINLLITRRFKSKHALGLYCLGLDYLRLKDNYGAKTFPVNELRKYLGLEAGQYP 185 Query: 200 RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 DF R L+ EIN + ++L +K R+ R S Sbjct: 186 AAADFYRYVLKKAQTEINQLSDIQLQLTPIRKQREVIAFKLEMRINPS 233 >UniRef50_D0QMK6 Pi protein n=1 Tax=Escherichia coli RepID=D0QMK6_ECOLX Length = 284 Score = 83.4 bits (205), Expect = 6e-15, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 28/238 (11%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 SLS KR+L+L + QI D +D I E+ +++ L A +++ K Sbjct: 26 SLSLSAKRVLFLALCQI---DTKEMLNDDILEVDADFFSKTTTLDKYAAYAALKEGAKVL 82 Query: 90 AGKEVVFYRPE-----------EDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPF 138 A +V R + A+ + + Sbjct: 83 ASTTLVLNRDDLKTLSNELGISTSKNKIPDRLDLNLTEFCAYYDHLATVRIKFTNTAKRY 142 Query: 139 FIGL---QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPD-GSGIVSLKIDWIIERYQL 194 F L +NR+T L + + + LY+ + +Y + S + +D + E L Sbjct: 143 FSKLIGSENRYTTQVLKSVVILNSVNSTNLYQVIRKYYSLNPASKSFEISVDQLKEEMGL 202 Query: 195 PQ--------SYQRMPDFRRRFLQVCVNEINSRTPMR-LSYIEK-KKGRQTTHIVFSF 242 Y + F R + + EI +T +R + + KKGR + F F Sbjct: 203 YNIENGEKVYRYPKYSFFIRDVINKSIREIIEKTEIRDIKFSVAGKKGRMVHMLRFDF 260 >UniRef50_B1F975 Plasmid replication initiation protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1F975_9BURK Length = 408 Score = 83.4 bits (205), Expect = 6e-15, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 74/196 (37%), Gaps = 15/196 (7%) Query: 56 HDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWF 115 + EI V +E+ G S +++ALK + + F +E G + Sbjct: 55 KKSVHEIPVGIMSEMLGFDSKNT-TALKEALKKISTTPIEFDILHAAGDEEWGVTTLL-- 111 Query: 116 IKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSET---KEITNPYAMRLYESLCQY 172 + + G+ + + L + + L K+ + YA+ LYE+ ++ Sbjct: 112 --SSANIRNGIVTYEYSSTLANKLANPE----IYLLININVQKQFSGAYALALYENCLRF 165 Query: 173 RKPDGSGIVSLKIDWIIERYQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 ++ +G + +D + S Y F ++ V E+N+ + + ++ +++ Sbjct: 166 KRTGSTGW--ISVDIWRKLLGAEASTYDEFKHFNSEVIKKAVKEVNTVSNILITPEYERQ 223 Query: 232 GRQTTHIVFSFRDITS 247 R+ I F D Sbjct: 224 NRRVAKIRFLVEDNPQ 239 >UniRef50_B9ECE7 Plasmid replication initiation protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9ECE7_MACCJ Length = 301 Score = 83.0 bits (204), Expect = 8e-15, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 72/201 (35%), Gaps = 23/201 (11%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + ++ + + + +++ + ++ A++ L Sbjct: 18 KFNANEMNLFFSIISKLKDKGED------TVIFSWNELKDLSRYKP-TATQRFVSDLDKT 70 Query: 90 AGKEVVF-YRPEEDAGDEKGYESFPWFIKRAHS----------PSRGLYSVHINPYLIPF 138 K + Y Y F F S G+ ++ INP L Sbjct: 71 YKKMLELNYGQTFVKKKRLTYSRFVLFTSFHIDCDMNDDGDLDASTGIVAIKINPELRHI 130 Query: 139 FIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSY 198 L ++TQ+ L E ++ + Y+ ++ L Q+R +G + L ++ E+ +P SY Sbjct: 131 LNDL-EQWTQYSLEEFIKLKSTYSKTIFRLLKQFRT---TGYLKLSVEEFREQLDIPNSY 186 Query: 199 QRMPDFRRRFLQVCVNEINSR 219 RM ++ + V E+N+ Sbjct: 187 -RMSHINQKVISVAEKELNAH 206 >UniRef50_Q8GN33 Probable replication protein rep n=12 Tax=Bacteria RepID=REP_BIFLO Length = 297 Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 71/230 (30%), Gaps = 16/230 (6%) Query: 15 SPRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + SN A +L ++R+ E + + L Sbjct: 3 NEIVKFSNQFNNVALKKFDAVHLDVLMAIASRVRERG------TATVEFSFEELRGLMRL 56 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 +K + D F F P+ V +N Sbjct: 57 KQNLTNKQL---ADKIVQTNARLLALNYMFEDSGKIIQFALFTVFETDPANQTLEVSVNE 113 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 L ++FT+F L+E ++ + YA Y QYR SGI + D Sbjct: 114 RFAFLLNDLTSQFTRFELAEFADLKSKYAKEFYRRAKQYR---SSGIWKVSRDEFCRLLN 170 Query: 194 LPQSYQR-MPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 + +S + + R L+ V E +++ K R+ + VF+F Sbjct: 171 VSKSTSDSVSNLNRVVLKPIVEECGPLLGLKIERQYAK--RRLSGFVFTF 218 >UniRef50_B3E5E7 Initiator RepB protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E5E7_GEOLS Length = 269 Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 67/212 (31%), Gaps = 14/212 (6%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 LS Q++ML + ++ G + + + +I G+ + + Sbjct: 47 LSETQQKMLAAAIALVK---GEADRRRTCYAMELEQLVQICGIERGNLYESLLNETAKLL 103 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 K V + + WF S G +P + Sbjct: 104 KKGVWIFDE-----ANRSVVRTVWFQSIEF--SAGKIVFQFADKALPLIFRCTSDSPGSD 156 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQ 210 L + + + + ++ + R G G++ I ++++ L + + R L+ Sbjct: 157 LIKGIQYKGKHTLAVFAMIWPCR---GKGVIEYSIPRLMQQLSLEHTRYSYGQLKLRILE 213 Query: 211 VCVNEINSRTP-MRLSYIEKKKGRQTTHIVFS 241 EI SR + + + GR+ + F Sbjct: 214 PAFREIYSRDDAVFVRFRPLFSGRKVEGVRFE 245 >UniRef50_C8WG51 Initiator RepB protein n=1 Tax=Zymomonas mobilis subsp. mobilis NCIMB 11163 RepID=C8WG51_ZYMMN Length = 326 Score = 82.2 bits (202), Expect = 1e-14, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 10/185 (5%) Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 I V++ +I G+ + + ++ Q LK + VV +D G I + Sbjct: 63 ISVSEMQKIKGIKNYNS-TELTQLLKEL--RAVVMEYRAKDRTIITGLLDIAAVIS---N 116 Query: 122 PSRGLYSVH--INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 P G + + T E+T+ Y++RLYE L Sbjct: 117 PDTGYLEIQWKFGESFRDLIAK-SEYWAIVDYRTTLEMTSRYSLRLYEILALRINLKHKN 175 Query: 180 IVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 + + + + +P+ +R D R + + V V EIN RT ++ KK GR + Sbjct: 176 SDTFTLAELRGKLGVPEGKLKRWSDLRDKAINVAVKEINQRTTFAVTAQPKKMGRSVQAV 235 Query: 239 VFSFR 243 F + Sbjct: 236 EFKWE 240 >UniRef50_Q5CZF6 Putative replication protein n=8 Tax=Bacteroides RepID=Q5CZF6_BACFN Length = 385 Score = 81.8 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 85/236 (36%), Gaps = 26/236 (11%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHV--------A 65 N + Q N +T A Q R+L +++++ +H + Sbjct: 43 NPTWLKQPNVVTLMAGDFKTVQIRILIAVIEKLQNVIELSIQHIDKYGTSIPCEQLSLFQ 102 Query: 66 KYAEIFGLT--------SAEASKDIRQALKSFAGKEVVFYRPEEDAGDE----KGYESFP 113 +Y++ + S + K+++ ++ V F + G+E G + Sbjct: 103 EYSDRIRVDIAYRDLGVSPDQYKEVKSMVRKLISIPVEFDVKDPITGEESWAITGLFTKA 162 Query: 114 WFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR 173 K +S +S+ ++ + FI + FT++ + Y +R+Y + ++ Sbjct: 163 NIPKTPYSRG---FSLEMDREVAKVFINVDRGFTRYIKEIALRAQSRYTIRMYMLISSWK 219 Query: 174 KPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK 229 + G S+ +D + +L Y D +R ++ +++ + E Sbjct: 220 EKGG---FSIYVDRFRKFLKLEDKYPEFKDLYKRVIRPVYDDLFEQADCWFEMAEV 272 >UniRef50_D2U4L0 Pi protein (Replication initiation protein) n=1 Tax=Arsenophonus nasoniae RepID=D2U4L0_9ENTR Length = 306 Score = 81.8 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 90/265 (33%), Gaps = 28/265 (10%) Query: 4 TAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIH 63 V+N ++ N+L SL K++L+L + QI + H I + Sbjct: 6 RLVMNKTAVSRLTKVRHRNELNSTLSSLPMSAKKVLFLVLSQINTKNEFDDNH--IFYLT 63 Query: 64 VAKYAEIFGLTSAEASKDIRQ---ALKS--FAGKEVVFYRPEED------AGDEKGYESF 112 Y + + A +++ L + K ++ + + Y + Sbjct: 64 ANDYVKWVNVNIDTAYCSLKEGAIILDNVLLKLKHEEIIELSDELQLPFTSKNAPDYINL 123 Query: 113 PWFIKRAHSPSRGLYSVHINPYLIPFFIGL---QNRFTQFRLSETKEITNPYAMRLYESL 169 A+ + G + + L + ++T L ++++ A +Y+ + Sbjct: 124 SLTEFSAYYKNEGKIGIRFTKSAKQYLCKLVGSEKKYTTQILLSVVKLSSVNASSIYQLI 183 Query: 170 -CQYRKPDGSGIVSLKIDWIIERYQLPQ---------SYQRMPDFRRRFLQVCVNEINSR 219 + + I+ + + L SY P FRR L V EI Sbjct: 184 RKKISNNSRIKFFDISINELKDEMYLYDVDSKGRKVYSYPEYPFFRRDVLNKAVKEIIKC 243 Query: 220 TPMR-LSYIEK-KKGRQTTHIVFSF 242 T ++ L + K GR+ I F+F Sbjct: 244 TEIKDLKFEVIDKIGRKVNKIRFTF 268 >UniRef50_O85801 Replication protein A n=8 Tax=Helicobacter pylori RepID=O85801_HELPY Length = 538 Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 10/131 (7%) Query: 126 LYSVHINPYLIPFFIGL-QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 + +N L ++T F L E + + YA LY L Q + +GI+S++ Sbjct: 53 YLEIQLNDNYQYLLNNLGMGQYTSFNLLEFQRVRGKYAKTLYRLLRQSK---STGILSVE 109 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPM-RLSYIEKKK----GRQTTHIV 239 E +P+ Y+ M + ++ L + E+ P LSY ++++ R+ THI Sbjct: 110 WTQFRELLDIPKDYK-MENIDQKVLTPSLKELRKIYPFEHLSYKKERRNSHDKRKVTHID 168 Query: 240 FSFRDITSMTT 250 F F + T Sbjct: 169 FYFEQLPQSET 179 >UniRef50_A2A225 Putative DNA Initiator replication protein RepB n=1 Tax=uncultured bacterium RepID=A2A225_9BACT Length = 169 Score = 81.1 bits (199), Expect = 3e-14, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 2/119 (1%) Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 RG I P L + F + L + T+ YA+ LYE++ + + Sbjct: 8 KRKRGNLKYSIPPELA-LLLKDSTVFAKLELEVLRAFTSKYALALYEAVARRVRLKHVFT 66 Query: 181 VSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 +D E + P + + ++ + E+N+ + ++ + +K GR+ T + Sbjct: 67 ERFSLDDFRELLGVEPDKLTTYGNLNQYAIKPALLEVNALSDFTVTAMPEKTGRRVTGV 125 >UniRef50_UPI00017427F0 replication initiator protein n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017427F0 Length = 123 Score = 81.1 bits (199), Expect = 3e-14, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 13/130 (10%) Query: 10 KKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAE 69 K N VQSN + + YSL Q++++ L + QI+ +D ++ VA+ E Sbjct: 7 KGLTNRAVAVQSNSMINSKYSLDPTQQKLILLAIAQIKTADEKFFKYSC----SVAELEE 62 Query: 70 IFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSV 129 G+ K R + K + + + ++ F WF + + Sbjct: 63 RLGVQI--QHKQFRDTCEDLFKKPIRI-------NNGRSWKLFNWFSSMQYIDEEARFEF 113 Query: 130 HINPYLIPFF 139 I+ LIP+F Sbjct: 114 KISDDLIPYF 123 >UniRef50_A4U0D9 Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U0D9_9PROT Length = 97 Score = 79.5 bits (195), Expect = 9e-14, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 8/102 (7%) Query: 88 SFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFT 147 +E+ + W + + G+ + + P LIP+ + ++ +T Sbjct: 4 RLRKREIDI-----EDISRNVIIQATWIASAEYQFNEGVVEICLAPALIPYLLDIRKNYT 58 Query: 148 QFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWII 189 L + + YA+RLYE L QY+ G G + I + Sbjct: 59 TVALKYVIGVKSAYAIRLYELLKQYQ---GIGTRVVSIADLR 97 >UniRef50_B5ZM92 Initiator RepB protein n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZM92_GLUDA Length = 223 Score = 79.5 bits (195), Expect = 9e-14, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 4/169 (2%) Query: 80 KDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFF 139 + I +L G + ++ ++ + G I LI Sbjct: 17 ERIEASLLRLMGTIAIVTIRKDGKSYKRRVQLLGP--SDESLEKDGFLHYRIPEELIE-I 73 Query: 140 IGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ-SY 198 + + + + + Y + LYE + + I+ + +P Sbjct: 74 LQNSEVYARLKTQVMYCFESKYTLCLYEMTERRIGLEYKQTEEFTIEELRGLLNVPDGKL 133 Query: 199 QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 +R D + L+V EIN P + + KKGR+ I F + TS Sbjct: 134 ERFADLNKYCLKVATEEINKLCPFYVDFSPIKKGRKVERIAFHWFPKTS 182 >UniRef50_Q9RHE5 RepA n=1 Tax=Erysipelothrix rhusiopathiae RepID=Q9RHE5_ERYRH Length = 217 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + + + + + I++ + D + + + + D+ + K Sbjct: 19 NFTATELDLFFTICANIKEQGTDILTFDFD---KLRELSNYEPTILKRFADDLDKTYKKL 75 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQ-NRFTQ 148 + D +E F F + S + +N L FT+ Sbjct: 76 IELNIRLDYENGD------FERFALFNRYRVSMENKTIEIQVNELFKYILNDLNIGNFTR 129 Query: 149 FRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRF 208 F L+E E+++ Y+ +Y + Q++ G + I+ +P+SY+ M D +R Sbjct: 130 FELAEFTELSSTYSKAIYRLIKQWKTV---GKWEVDINEFRRLLDVPESYK-MGDIDKRI 185 Query: 209 LQVCVNEI 216 L + ++ Sbjct: 186 LNPALKDL 193 >UniRef50_Q5I3A2 Replication protein (Fragment) n=1 Tax=Vibrio cholerae RepID=Q5I3A2_VIBCH Length = 230 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 17/214 (7%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 I + + L + LS + M L V ++ +D + E + +E G+ S Sbjct: 23 KHIKKGHQLVFSRQDLSAREADMFALMVAHMKAAD--WDTNTPHYEFTSHQLSEWLGVES 80 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 ++ A +++ E Y P F A+ G+ ++ N L Sbjct: 81 KHIGSNLSPVANRLASRKIGIKIESRKGDTEFDYR--PLFKHIAY--KNGVLTMVPNDML 136 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL- 194 +I F ++ Y+ RLYE L +++ K+D + + L Sbjct: 137 KSEYIEYNQGFALINTRNFFDVKKEYSKRLYELLSRFKDKGFEMHQQ-KLDELKGVFGLL 195 Query: 195 ---------PQSYQRMPDFRRRFLQVCVNEINSR 219 S++ F +R ++ + E++ Sbjct: 196 NEAGKLKKDKTSFKNNSVFMKRCIRESIKELSEH 229 >UniRef50_C9L0X5 Initiator RepB protein n=4 Tax=Bacteroides RepID=C9L0X5_9BACE Length = 367 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 16/229 (6%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKS-DGTLQEHDGICEIHVAKYAEIFGL 73 ++Q N++T YS++ Q+ +L L DQI++ Q + V + Sbjct: 37 EVMLIQPNNVTFGQYSVTEWQENLLTLISDQIQQHMTREKQLPKDLFNQPVVEIKCDEAG 96 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS-PSRGLYSVHIN 132 SK +++A+ + K F + + E+F I H+ ++ +N Sbjct: 97 GKNNKSKVLKEAI-AMMRKNFSFRWVHPNI--HQTVETFGVVITTVHNIKGTNRVALTLN 153 Query: 133 PYLIPFFIGLQNRF--TQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 P+ IPF + T++ + + Y RLY+ +C R I+ + Sbjct: 154 PWAIPFLLYYGTGVGGTRYGKNIALTLRGNYTKRLYKIICSQRD---RREYYYSIEQFCK 210 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSR-TPMRLSYIEK----KKGRQ 234 ++P SY ++ L+ I + Y KKG++ Sbjct: 211 DLEIPASYSN-AQIDQKVLRPAQTRIKESEADVWFDYKFICKTPKKGQK 258 >UniRef50_Q9ZN83 Replication protein n=2 Tax=Lactobacillales RepID=Q9ZN83_STREI Length = 281 Score = 78.4 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 72/233 (30%), Gaps = 15/233 (6%) Query: 15 SPRIVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + NDL + ++ + + + R D + +A A Sbjct: 3 NEIVKHHNDLNTVIMRKWTAEEMNFFFAIIAKARNQGTKELVFD---KYQLADLANYSLE 59 Query: 74 TSAEASKDIRQALKSFAG-KEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + + + + + + D W S +V I+ Sbjct: 60 HNQRFYETMDNLANNISKLRYIERTSHSVDYMALFTRFKVEW----TEDLSDMKATVSIS 115 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 L+ FTQ+ L E I + YA Y L Q+R G + Sbjct: 116 DKFEYIVNKLEANFTQYELEEFTSIRSTYAKTAYRLLKQWRTI---GKKEFSKEEFKMLM 172 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSR-TPMRL-SYIEKKKGRQTTHIVFSFR 243 P Y ++ D R ++ + E++ +++ K+G F+++ Sbjct: 173 DTP-IYYQVSDIDRLVIKPILKELSQYFMGLKVKKIKSNKRGNPVLGYEFTWK 224 >UniRef50_C6XEL6 Initiator RepB protein n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEL6_METSD Length = 442 Score = 78.4 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 63/198 (31%), Gaps = 9/198 (4%) Query: 59 ICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKR 118 + +I +A+ + + + L+ +V ++ + + G S + Sbjct: 61 VYKIRLAELIANV-SPDSNDYETFKTYLRKMNATQVEWHSTSDGGAENWGVSSLLAEAEV 119 Query: 119 AHSPSRGLY-SVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG 177 +S G P + + +T + + ++ LYE +Y Sbjct: 120 INSKKDGYVLEYSFAPKIKKRLLD-PEVYTHIIFRFQSVLRSNASLALYEICSRYATNPS 178 Query: 178 SGIVSLKIDWIIERY------QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 + + W + Y F+R L+ +NE+N T + + IE K Sbjct: 179 NLTMRHPWQWWRPVLTGTPDQEAEGEYGEYKYFKRDVLKPALNEVNKLTDLDVELIEHKI 238 Query: 232 GRQTTHIVFSFRDITSMT 249 GR+ + F Sbjct: 239 GRRVDEVQFRVTAKAQTN 256 >UniRef50_A1VWT1 Initiator RepB protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWT1_POLNA Length = 476 Score = 78.4 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 33/240 (13%), Positives = 84/240 (35%), Gaps = 28/240 (11%) Query: 30 SLSRDQKR----MLYLFVDQIRKSDGTLQEHDGICEIH---VAKYAEIFGLTSAEASKDI 82 L+ +++ +L Q+R+ + ++ + + + + + Sbjct: 62 KLTAIERKLLNSILLSSARQLREYRALHSQDPSNTHLYSALADELLDPVEVGKSNLKSAL 121 Query: 83 RQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN--PYLIPFFI 140 R+ + + + + P+ +G +E+ + G V P + Sbjct: 122 RKHVLALRRAVINWEAPDAKSG--VVWENLSMLSEARFEIRNGGLYVLWALPPKINEALS 179 Query: 141 GLQN-RFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI------DWIIERYQ 193 Q FT+ L + + + A+ LYE +Y+ +I +W ++ Sbjct: 180 DYQEFHFTKLDLEKISRLKSYTAVALYEICVRYKNNFRKEGKGERITNASPPEWWVDALT 239 Query: 194 --LPQSYQR--------MPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 +P++ + + ++ + EIN+ T + + EKK G+ + + F R Sbjct: 240 NIVPKTNKETGQPVRREWRKVKNEAVKKAIEEINAVTDLDIVLTEKKTGKAVSLVQFEIR 299 >UniRef50_D1XV24 Initiator RepB protein n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1XV24_9BACT Length = 389 Score = 77.6 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 85/256 (33%), Gaps = 33/256 (12%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRK--------------SDGTLQEHDG 58 K+ ++Q +T Y S Q R+L V+ ++ +E D Sbjct: 44 KDETWLIQPIAVTMMRYDYSLIQVRILVSIVENLQAILLGILNNKQSAQLDLFQTKELDE 103 Query: 59 ICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWF--- 115 + + + G+ ++R +LK A V + Y + Sbjct: 104 DGRMPIKLPFKELGVDPNH-YPELRTSLKMLASLPVEIPYKTTEGRKYTKYTNLCDVYIP 162 Query: 116 IKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKP 175 R+++ + +N + + L + + N Y R+Y + + Sbjct: 163 QDRSYNK---YAILKLNRAVAERLVSLDLGYHRLGKQIVFACKNKYTQRIYMFIESWVNK 219 Query: 176 DGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINS-----RTPMRLSYIEK- 229 + I ++ + +L +Y++ DF RR L + E+ Y +K Sbjct: 220 GRTVIKTI---DFRKMLRLEDNYKKFSDFCRRVLDPAMAELKDMAGKGYCDCYFEYEKKY 276 Query: 230 ---KKGRQTTHIVFSF 242 ++G + ++F+ Sbjct: 277 DHGQRGGEPDELIFTI 292 >UniRef50_UPI0001BCA79F replication-like protein n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCA79F Length = 509 Score = 76.8 bits (188), Expect = 5e-13, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 19/230 (8%) Query: 21 SNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASK 80 SN + +L+ ++ ++R D +E + ++ + + + + K Sbjct: 20 SNQII--IKTLNANELNFFMAICSKMR--DKETEEIVFTFK-NLKELVKWTSNDNKDFIK 74 Query: 81 DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFI 140 + + F DE F F + +V +N Sbjct: 75 SLENTNRKLIALNFRF-------EDEIEIVQFVLFPTFTINKDMKTLTVAVNKKFAFLLN 127 Query: 141 GLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQR 200 L + FT+F L + + Y+ LY+ L +++ +G + + I+ + +P Y R Sbjct: 128 NLSSNFTRFELENFTILQSKYSKYLYKELMKFK---STGYMIMSIEEFRNKLDIPIKY-R 183 Query: 201 MPDFRRRFLQVCVNEI-NSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 M + + L+ EI N ++ + KKG+ I F F I T Sbjct: 184 MSEINKFVLKPIEQEIPNVLKGFKID--KIKKGKSIEKIEFCFTPIKKET 231 >UniRef50_C3XLI9 Replication protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLI9_9HELI Length = 327 Score = 76.4 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 16/181 (8%) Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + + Y+ ++ Y +F + V I+ Sbjct: 117 TNRNRFYESLVSFSNKLMSLKAQGYK-SVGINKKRKYSVINFFSVIDIDEDSKTFFVKIS 175 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 L +T+F L E I + YA LY L QY G L + Sbjct: 176 EEASCLINNLFKNYTRFDLKEFCSIDSKYAKNLYRILKQYENL---GHCKLDWESFRNIM 232 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEI--NSRTPM----RLSYIEKK---KGR--QTTHIVFS 241 +P+SY++ D +R L ++++ N+ + L+Y + K KGR + IVF Sbjct: 233 CIPESYEQ-RDVSKRVLNPSISKLNSNNYNGIPYFKDLTYQKIKVSGKGRGGVVSAIVFE 291 Query: 242 F 242 F Sbjct: 292 F 292 >UniRef50_A7HZC8 Putative RepE n=2 Tax=Campylobacter RepID=A7HZC8_CAMHC Length = 376 Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 83/229 (36%), Gaps = 26/229 (11%) Query: 27 AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQAL 86 A +L + + + + V + +++ ++ AE F + SK++ + + Sbjct: 42 AFKNLDKVEANLFFSIVARFNDKGAEK------LKLNFSEIAE-FISDNKYTSKELSKLI 94 Query: 87 KSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQ-NR 145 GK V E + Y F F + IN + + Sbjct: 95 NDGVGKVVQSAIKWEMTPIKTAY--FTLFNEFLVDDENKTLEASINSRFLFMLNNFKDGN 152 Query: 146 FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFR 205 FT L+E + + Y LY L Q+R +G S+K IE +P SY R D Sbjct: 153 FTMLELAEFSSLKSKYTQTLYRLLKQFR---FTGFRSIKWAEFIEIMDIPTSY-RARDID 208 Query: 206 RRFLQVCVNEINSRTPM---------RLSYIEKK---KGRQTTHIVFSF 242 ++ L+ + E+ + +L Y + + +GR I F F Sbjct: 209 KQILKPAIAELTQEADIFNQNNPIFKKLIYKKIRGTGRGRPVELIEFYF 257 >UniRef50_D0I2R4 Replication protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I2R4_VIBHO Length = 307 Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 73/207 (35%), Gaps = 25/207 (12%) Query: 60 CEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 + E G++S+ + +S A + + +P D K ++ F + + Sbjct: 27 YQFKSDVLCEWLGVSSSNLYNTLSGPAESLANRAIGIRQP-----DRKEFDFVSLFKRLS 81 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 + + ++ N L+ ++G+ Q +++ ++ RLY L +++ + Sbjct: 82 YKD--AVLTIIPNDELMKEYLGVSQGHAQVDHHVFRKLKKEHSKRLYPLLSRFKNEAHTL 139 Query: 180 IVSLKIDWIIERYQL--------PQSYQRMPDFRRRFLQVCVNEINSRTP-MRLS----- 225 I+ + + L SY F R ++ + EI P + Sbjct: 140 HPQ-SIEELHGFFGLLNEKGELIKTSYANNKVFIDRCIRQPIEEIAKHDPNIEFQISPEG 198 Query: 226 ---YIEKKKGRQTTHIVFSFRDITSMT 249 Y K GR+ + F +R + Sbjct: 199 TFGYRTMKSGRKIAKVEFLYRWRKPVN 225 >UniRef50_D1XZR3 Initiator RepB protein n=2 Tax=Prevotella RepID=D1XZR3_9BACT Length = 424 Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 85/248 (34%), Gaps = 38/248 (15%) Query: 21 SNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTL----QEHDGICEIHVAKYAEIFGLTSA 76 +N + + + ++R LY + I+ + +++ ++ ++ + Sbjct: 22 NNLILRSPLRYTMMERRFLYKLSEAIKMRYEEMGLTMRDNWQNLIFNMTD-RDLASVGGN 80 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 + ++S A K +V + ED + + F W + S Y+V ++P L Sbjct: 81 THVMRTYKTVRSLAQKAIVQFHENED--KQLVVDYFHWIDAFRWNTSTNDYTVRVSPELY 138 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY------------RKPDGSGIVSLK 184 + I L FT L + + Y+ + YE C Y + ++ + Sbjct: 139 DYVINLTKSFTVLNLHTAILLESKYSQKFYEICCLYSGDFRYIDPTMLNETYKKRVLKMS 198 Query: 185 IDWIIERYQL-------------PQSYQRMPDFRRRFLQVCVNEI-----NSRTPMRLSY 226 ++ + L + YQR + + E+ N++ + + Sbjct: 199 VETFRFTFGLSELHDPKTGELLEKEKYQRFKTMVEKVILPAQRELYELYQNNQCDVWFDF 258 Query: 227 IE-KKKGR 233 + GR Sbjct: 259 EVADRYGR 266 >UniRef50_C5VLR9 Initiator RepB protein n=3 Tax=Prevotella RepID=C5VLR9_9BACT Length = 382 Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 72/243 (29%), Gaps = 27/243 (11%) Query: 23 DLTEAAYSLSRDQKRMLYLFVDQIRK--------------SDGTLQEHDGICEIHVAKYA 68 +T + S Q R+L V+ ++ E D + + Sbjct: 47 AVTMMRHDYSLIQVRILVSIVESLQSILHGILNNKRGFQLDLFHTDELDEDGRMPIKLPF 106 Query: 69 EIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 + G+ +R +LK A V + + Sbjct: 107 KELGVDPNH-YPQLRNSLKMLASIPVEIPYKTAEGRKYTKATNLCDVYIPEDRSYNKYAI 165 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 + ++ + + L + + N Y R+Y + + + I +L Sbjct: 166 LKLDHSVAERLVSLDFGYHRLGKQIVFACKNRYTQRIYMFIESWVDKGRTVIKTL---EF 222 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEINSRT-----PMRLSYIEK----KKGRQTTHIV 239 + +L +Y++ DF RR L + E+ Y +K ++G + ++ Sbjct: 223 RKMLRLENNYKKFSDFCRRVLDPAMQELKELAEKGFCDCHFEYEKKYDHGQRGGEPDELI 282 Query: 240 FSF 242 F Sbjct: 283 FII 285 >UniRef50_Q03N27 Plasmid replication initiation protein n=22 Tax=Lactobacillales RepID=Q03N27_LACBA Length = 311 Score = 75.7 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 87/243 (35%), Gaps = 37/243 (15%) Query: 20 QSNDLTEAAYS----------LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAE 69 SN+L Y + + + + + ++R + D + + Sbjct: 1 MSNELI--KYDPELNTIPLRKFTPIEMNLFFSIISRMR------DKGDQTVRFSFEQLKD 52 Query: 70 IFGLTSAEASK---DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 + ++ DI++ + G + F R + + + + F F + S Sbjct: 53 LSNYKPTANNRFEDDIQRTYEKLMG--LHFGRRSKSGLNREMFVMFTKFSIVGEADSP-Y 109 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID 186 V + +P L ++ L+E +++ + YA + L +R +G L + Sbjct: 110 IDVEVYKDALPLLNNLDTW-VRYALAEFRDLRSSYAKTAFRLLKGFR---TTGYAFLSKE 165 Query: 187 WIIERYQLPQSY-QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK-----GRQTTHIVF 240 E +P+SY ++ D R ++ E+ TP+ +KK G+ F Sbjct: 166 DFFELLDIPKSYWKKSGDIDRYVIKPIKEEL---TPLFRGLAIRKKYGKGRGKPVIGYSF 222 Query: 241 SFR 243 +++ Sbjct: 223 TWK 225 >UniRef50_A4JUI4 Putative uncharacterized protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JUI4_BURVG Length = 423 Score = 74.9 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 68/204 (33%), Gaps = 15/204 (7%) Query: 44 DQIRKSDGTLQEHDGI-CEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEED 102 I+ + +E + E + GL S + ++ + S G F + Sbjct: 41 ALIKNAIEQRKEGERTWFEYSIGDLISDVGLNSKN-REFVKATINSLLG----FVVNWDQ 95 Query: 103 AGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYA 162 + + + S G + + + + + + YA Sbjct: 96 LAAKSEWNASALLAGAKI--SGGTLKYQFSDNISELLLS-PEVYASIDMRIARTFKRGYA 152 Query: 163 MRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ----SYQRMPDFRRRFLQVCVNEINS 218 + L+E++ +Y +G +K++ + + SY F+ R L + EIN Sbjct: 153 LTLWENVVRYEGVGQTG--KMKVNTLRDLLLGMDWGQGSYAEYKIFKSRILVPALREIND 210 Query: 219 RTPMRLSYIEKKKGRQTTHIVFSF 242 + + E+K GR T + F Sbjct: 211 VSDHEIVMKEEKTGRSVTEVRFFI 234 >UniRef50_P72243 ORF1 n=1 Tax=Prevotella ruminicola RepID=P72243_PRERU Length = 246 Score = 74.5 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 19/159 (11%) Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 FG+ A +++AL++ G+ V E + P + ++++ Sbjct: 50 FGIDKEHAYT-VKRALRAIMGEPFVI---SGSMKGNAAVELIAPISYVKYDPDKEVFNIQ 105 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 ++ ++ ++ L N + ++ + Y R YE C++RK G + D I Sbjct: 106 LSELIVNHYLEL-NVYDRYSPLIARSFDGQYTPRFYEWACRWRK---QGFYDIDYDNIRT 161 Query: 191 RYQL-----------PQSYQRMPDFRRRFLQVCVNEINS 218 + L Y+ D ++ + ++EI Sbjct: 162 EFWLNAYTDDKGKKHKAKYRDNGDIMKKIIMPSLDEIRQ 200 >UniRef50_Q58AT2 Replication protein n=2 Tax=Cupriavidus metallidurans CH34 RepID=Q58AT2_RALME Length = 395 Score = 74.5 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 13/181 (7%) Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 F ++ A +++AL+ V + GD + + S P + G Sbjct: 38 FETSNNVAH--LKKALRECQSSSVQVSVERKGGGDPQ-WVSVPLLGSVGIAG--GRVVFK 92 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 ++ + R+T L + + + YA LYE L R + L I+ + + Sbjct: 93 VDEMIRRQLKD-PKRYTYLSLRMSAAL-SQYAYILYERLGALRFMGTTNW--LPIEEVRK 148 Query: 191 --RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK--GRQTTHIVFSFRDIT 246 +S F+R L + +IN T + + Y K R+ I F RD Sbjct: 149 WVNADAVKSLTEYKQFKRLVLDKNIAQINELTDLYVEYETKTAQGSRRVAAIRFKLRDNA 208 Query: 247 S 247 Sbjct: 209 E 209 >UniRef50_C5NND2 RepB initiator protein n=1 Tax=Photobacterium damselae subsp. piscicida RepID=C5NND2_PASPI Length = 254 Score = 74.5 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 80/218 (36%), Gaps = 24/218 (11%) Query: 30 SLSRDQKRMLYLFVDQIRK------------SDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 SL ++ + L + +I K D + E + +F + Sbjct: 17 SLGAAEQDVFALVLCEISKVVGFNSTQIKQCDDFEKKPIPYQFEFSEEELTTLFQCSVDN 76 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 K I A KS +EV + E+G++ F + ++ + + + + P + Sbjct: 77 LRKTIEPAAKSLVKREVSY-------SSERGFDVFSPIARARYNMGQPFF-IEMAPSVAE 128 Query: 138 FFI-GLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 ++ F++ ++ Y RL ++L Q++ V KI + L Sbjct: 129 LLAENVEAGFSEIDFKLFVSLSGRYERRLLKALSQWKHNPSK-EVKFKIQDYRDYIGLED 187 Query: 197 -SYQRMPDFRRRFLQVCVNEINSRT-PMRLSYIEKKKG 232 YQR R+ ++ +++I ++ + +KKG Sbjct: 188 GEYQRTEALVRKTIKKPISDIIEKSEGCWVPTDPEKKG 225 >UniRef50_D0Z5I8 Putative uncharacterized protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z5I8_LISDA Length = 326 Score = 73.3 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 76/256 (29%), Gaps = 45/256 (17%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI------------------ 59 I +S+ L A S + ++ +L L + ++K ++ + Sbjct: 6 ITKSHPLITAKMSFTAKEQDLLNLILVSLKKEANAQKKTSKLKNLPVSDKNDGVHIDKLS 65 Query: 60 --CEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIK 117 E + ++ +T + + +A K P + F + Sbjct: 66 LQYEYTRQELLDLLEVTPKRLTAYLDEATDELMEKVATVRNPNTGEYRKYKLVGFSSW-- 123 Query: 118 RAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG 177 + ++ I+ + + F + N R+ + + +++ Sbjct: 124 -----EANVLTLSIDKEVAEVLLNYSAGFAVIDFKLMFALKNKNEKRILDLISRFKGKKN 178 Query: 178 SGIVSLKIDWIIERYQLP-QSYQRMPDFRRRFLQ-------VCVNEINS-----RTPMRL 224 + +I + E + Y FR L N + +T +++ Sbjct: 179 T-FFKCRIKDLCEMLGVSYGDYANYNSFRIAVLSQPLARIIKASNGLWEYMPDCKTGIKI 237 Query: 225 SYIEKKKGRQTTHIVF 240 KKGR TT F Sbjct: 238 ----YKKGRATTENDF 249 >UniRef50_B9B6L3 Initiator RepB protein n=17 Tax=Burkholderia RepID=B9B6L3_9BURK Length = 438 Score = 73.0 bits (178), Expect = 9e-12, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 72/220 (32%), Gaps = 12/220 (5%) Query: 35 QKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEV 94 Q+R ++ + + + I +A + GL S K ++ + S Sbjct: 45 QQRKMFSSLIKNALRQEAFEPGRTSFSISIAALSHESGLNSNNT-KYVKDTVNSLIS--- 100 Query: 95 VFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSET 154 + A D + A + + + + + + + Sbjct: 101 TVVNWDYLAADRSTVWKASGLLAGAELE-QSVLKYSFSDQIRSELLN-PEIYALIDMRIA 158 Query: 155 KEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY----QLPQSYQRMPDFRRRFLQ 210 +E +++ L+E+ +Y + + + + + QSY+ F+ + L Sbjct: 159 REFRRSHSLALWENTVRYEGIGITA--KIPLPKFRDLILGQDKASQSYKEYKLFKSKVLV 216 Query: 211 VCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 C+ E+N + L IE K GR + F S T Sbjct: 217 PCIQEVNEVSDHTLELIEHKSGRSVEAVQFKVTRKPSADT 256 >UniRef50_UPI0001742AD8 putative RepE n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742AD8 Length = 203 Score = 72.6 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 8/120 (6%) Query: 127 YSVHINPYLIPFFIGLQ-NRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 ++ ++ + +T+F L E + + Y Y + Q+R +G S+ + Sbjct: 1 MTIAVSERFKFLLNEFEPGNWTRFELEEFVRLKSSYTKEFYRRMKQFR---STGFWSVNL 57 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRL--SYIEKKKGRQ-TTHIVFSF 242 D +P +Y RM D + L+ E+ + +++ +Y K +GR + +F+F Sbjct: 58 DEFKRLMDIPVNY-RMCDIDVKVLKPIQKELKEKYGLKIQKTYNTKGRGRPAVSGFIFTF 116 >UniRef50_D1ARP8 Initiator RepB protein n=2 Tax=Fusobacteriaceae RepID=D1ARP8_SEBTE Length = 403 Score = 71.8 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 81/218 (37%), Gaps = 17/218 (7%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 LS ++ + V I L + E+ + ++ L +++ ++F Sbjct: 17 KLSSNENIIFKRIVKHI------LLNNTPYMELSENELNKLIKLDQNN---NLKNFFENF 67 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 K++++ + D +G ++I ++ Y + + F N F + Sbjct: 68 MKKKILYSYNKLDYIKYEGM----FYIISSYRIINQKYYITFSEDFYKVFNKESNDFKVY 123 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 + + + + + + L Q K + + + + + + ++ ++Y R DF + L Sbjct: 124 KFNLLLQFNDSTSRNFFMMLTQ--KNILNNFIDISLTELKKILEIEKNYSRFYDFEKYIL 181 Query: 210 QVCVNEINSRTPMRLSYIEKKKG--RQTTHIVFSFRDI 245 + EI + + + Y + K R+ + +D Sbjct: 182 LPVIKEIKDISNIEIEYEKIKISNNRKIIGLRLYVKDR 219 >UniRef50_Q02VJ2 Replication initiator protein n=1 Tax=Lactococcus lactis subsp. cremoris SK11 RepID=Q02VJ2_LACLS Length = 296 Score = 71.0 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 83/216 (38%), Gaps = 11/216 (5%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 + +KR++ + +++ D + + D + + A ++ + + L+ + Sbjct: 20 FNEREKRIVMALLHEVKGKDTQIVQLD-FHTLRGLTGWDETNHKGANSNAEFVKYLEILS 78 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWF-IKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 K ++ R + D F F V INP + L + FT F Sbjct: 79 DK-IMTLRGTLRSDDGLQIVKFSLFPTFIIDGKKTNTLKVSINPEFK-YLTNLFDMFTAF 136 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 L + ++ Y LY + Q+R +G +K + + +P+SY + R+ Sbjct: 137 ELEDYNKMHTSYGQELYRLIKQFR---TTGFYRVKTEDLRHLLSVPKSYTN-AEMDRKVF 192 Query: 210 -QVCVNEI-NSRTPMRLSYIEKK-KGRQTTHIVFSF 242 + V+++ N+ + ++ +GR F+F Sbjct: 193 SKTTVSDLTNAFSNFKIKQERGTGRGRPIIGYTFTF 228 >UniRef50_C9CGX5 Plasmid replication protein n=5 Tax=Enterococcus faecium RepID=C9CGX5_ENTFC Length = 245 Score = 70.7 bits (172), Expect = 4e-11, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 19/230 (8%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + + + ++++ + E+ L Sbjct: 19 KFTPIDMDLFWGICSKMKRKG------TKEEIFTFKQIKELIDYNINARGDRFANDLIKM 72 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 + K + E DEK YE F K + ++ + FT+F Sbjct: 73 SKKIITLSFIYE---DEKTYEQLNLFQKFKIDKVNETLLIKVSEEFEYILNSIGTNFTRF 129 Query: 150 RLSETKEITNPYAMRLYESLCQYR-KPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRF 208 L + + Y LY L ++ + G +KI+ +P+SY RM D ++ Sbjct: 130 ELENMTNLKSSYVKELYRQLMAHKDRRSKKGHWFVKIEDFRALLAIPESY-RMRDIDKQI 188 Query: 209 LQVCVNE-INSRTP---MRLSYIEKK----KGRQTTHIVFSFRDITSMTT 250 E +N + + ++ KK KG + + F + T Sbjct: 189 FAQAKKEFLNVNSTHPAIFKTFEIKKIKAYKGNKIGSLQIYFEENIPSIT 238 >UniRef50_A8UD54 Replication protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UD54_9LACT Length = 258 Score = 70.7 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 15/188 (7%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + ++ + + +++ ++ E + E+ + +++ + Sbjct: 18 KFNPNELDLFFSICSKLK------DKYTQEIEFSFEQLKELSNYSPTS----VKRFMNDL 67 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 E + F F K + + IN F + FT+F Sbjct: 68 DKTYTKMLGLTYGERTETRIKRFVLFTKFDINADTQTVKIGINNE-FEFLLNDFEMFTKF 126 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 L E EI + Y +Y L Q++ G+G ++ I+ +P+SY RM D RR L Sbjct: 127 ELREFTEINSSYTKTIYRKLKQFK---GTGFYTVSIEEFKRLLDIPESY-RMYDIDRRIL 182 Query: 210 QVCVNEIN 217 + + E+ Sbjct: 183 EKSIKELK 190 >UniRef50_C5SZF3 Initiator RepB protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5SZF3_ACIDE Length = 453 Score = 70.7 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 18/232 (7%) Query: 30 SLSRDQKRMLYLFVDQIRK-------SDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDI 82 +LS +++ + + ++ S I ++ A S + + + Sbjct: 40 NLSLLSRKVFNVMMYHAQEMKVPGLNSPINTPASKKYFWIPLSDLARDAAYDSKDV-QYL 98 Query: 83 RQALKSFAGKEVVFYRPEEDAGD-EKGYESFPWFIKRAHSPSRG--LYSVHINPYLIPFF 139 ++ L+ + E E+ S + G + P + Sbjct: 99 KKQLEEMQN--IKLLMENERQWTSERLVSSVTLVNPAGLNKHSGQVWFGFAFPPEVHEQV 156 Query: 140 IGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ---LPQ 196 + + +T+ + + + A+ LYE +Y + + Sbjct: 157 MA-PSTYTRLSIVYQSSLKSGSALALYEICRRYATNPSKVTFIQTYEHWYGVITGNSISD 215 Query: 197 SYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 S F+R ++ + EIN+ T + + IE K GR+ + F Sbjct: 216 STPPVYKYFKRDTIKPAIAEINALTDISIELIEHKNGRRVEKLQFRVEQTKQ 267 >UniRef50_Q7WWW9 Putative replication protein n=1 Tax=Ralstonia eutropha H16 RepID=Q7WWW9_RALEH Length = 455 Score = 70.3 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 77/224 (34%), Gaps = 16/224 (7%) Query: 21 SNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASK 80 SN + LS +R++ + + + +E+ + V + + TS + Sbjct: 35 SNAFVKII-DLSLAGRRLIDVAYFLVAEDQEVRREY----RVDVGLFKWLLATTSNN-RR 88 Query: 81 DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFI 140 + + ++ + + + + + + P +G + + L Sbjct: 89 HLSKLVREAQKAAIELNEIDVEDPSKDRWGAVPLMGSA--FIEKGEFIFELPERLQRAI- 145 Query: 141 GLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS-YQ 199 +N + LS + ++ LY+ L Q+ + ++ + + + Y Sbjct: 146 --KNPKSSHFLSLRYVFKSVHSKVLYDRLQQFMVEGITPW--FEVQALRAWLECEKKTYD 201 Query: 200 RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK--GRQTTHIVFS 241 FR + L+V ++EI T + + + ++ + F Sbjct: 202 LFKHFRSKVLEVAISEIREVTGLHIEMLTLNVPGSKKIGQVRFR 245 >UniRef50_Q3BZT2 Putative replication protein n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BZT2_XANC5 Length = 436 Score = 70.3 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 70/224 (31%), Gaps = 24/224 (10%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 SL+ Q+++ + I V Y F + ++++L Sbjct: 42 SLTLLQRKVFAALLLNGYDELPNFSIISHQIPIGVLSYLAGFNSKNTPY---LKESLTGL 98 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIG------LQ 143 V + D + + + A G+ +P L L Sbjct: 99 VTSPV---QWNILRSDGRAAWAVSATLASARIED-GVVYYSFSPELRKRLYDPEVSGVLS 154 Query: 144 NRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ--SYQRM 201 T+ + + A+ LYE+ Y + + + + + + +Y Sbjct: 155 ASVTRL-------MKSSPALALYENCMVYAEEGVTP--AFALPDLKGLLGVAGNSTYDDF 205 Query: 202 PDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 F+ + L E+N P++L I + R+ + F+ + + Sbjct: 206 GKFKDKVLNPACREVNRVAPIQLEPILNRSARKVVSVAFAIKIL 249 >UniRef50_B9ECF4 Plasmid replication initiation protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9ECF4_MACCJ Length = 293 Score = 70.3 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 78/215 (36%), Gaps = 12/215 (5%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 ++++ + + ++++ E D + +A+ A + + + + +K+ Sbjct: 19 KWTKEEMDFFFSIISKLKEKGTREIEFD---KYQLAELARYTVTHNKRFEETMERLVKNI 75 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 + + Y E + + S V + LQ FT + Sbjct: 76 SQ---IHYIERTSNSLELMNLFSRFKVTWEDDLSDMTLVVKVTEEFNYVINKLQVEFTSW 132 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 L E I + YA +Y L Q+R G V K+D + +P SY + + L Sbjct: 133 ELEEFTSIRSTYAKTMYRLLKQWRTV---GKVEYKVDVFKQLLDMP-SYYTPSEIDKNVL 188 Query: 210 QVCVNEINS-RTPMRL-SYIEKKKGRQTTHIVFSF 242 Q + E+ S + +++ K+G F+F Sbjct: 189 QPILKELPSFFSNLKIKKIKSNKRGTPVIAYEFTF 223 >UniRef50_C3X132 Putative uncharacterized protein n=1 Tax=Fusobacterium sp. 7_1 RepID=C3X132_9FUSO Length = 475 Score = 69.9 bits (170), Expect = 8e-11, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 65/177 (36%), Gaps = 6/177 (3%) Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 + E+ +++ D + + S +EK F F Sbjct: 18 SFNELKNISNWTNKND-KDFIHSLEMTNKKLIELTFRFENEKEIIMFVLFPTFHIDKDEK 76 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 V +N L N F ++L + + + Y+ LY+ L ++ +G KI Sbjct: 77 TLKVAVNKKFAYLLNNLSNNFNWYQLKDFTSLNSKYSKLLYKELMLFKD---TGYRIFKI 133 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 + ++ +P+ Y RM + +++ L + E + ++ K GR I F+F Sbjct: 134 EDFRKKLDIPEKY-RMTNIKQKVLTP-IEEDFKHIFSKFEIVKIKNGRDIAQIRFNF 188 >UniRef50_A6DEU9 Putative uncharacterized protein n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DEU9_9PROT Length = 564 Score = 69.9 bits (170), Expect = 8e-11, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 74/233 (31%), Gaps = 31/233 (13%) Query: 45 QIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF--------------A 90 I K + +++ +IF K+I + K Sbjct: 68 MIEKWKNNEFTKIISFYLSISELKKIFKDFKHLRKKEIYETFKELEEIKLIKINLLEKDT 127 Query: 91 GKEVVFYRPEEDAGDEKGYES------FPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQN 144 KE++ ++ ++ + + S ++ P + + + Sbjct: 128 KKEIIIQSNSNKIPNDIDFDQVTSVDIIRIISNVKIDYTNDIVSFYLPPISLAYLVA-PK 186 Query: 145 RFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS--------LKIDWIIERYQLPQ 196 +T L +++ Y++ L+E L + + + + + + + Sbjct: 187 MYTNLNLLILNYLSSSYSITLFEFLHDFYENQKRFNQNKDFFETGKISLTKLRQILGAYN 246 Query: 197 SYQRMPDFRRRFLQVCVNEINSRT--PMRLSYIEKKKGRQTTHIVFSFRDITS 247 Y R DF++ L + E+N P + + E KKG++ I F D Sbjct: 247 KYSRYTDFKKWVLNPAIKELNKSDVVPFFIEFQEIKKGKKVEWINFIMEDKPE 299 >UniRef50_A0L312 Initiator RepB protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L312_SHESA Length = 387 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 89/246 (36%), Gaps = 30/246 (12%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEA 78 ++++L + S++ ++ +L LF+ Q++K+ +E I ++ A+ + S Sbjct: 42 KKNHNLIYSRISMTTHEQNLLALFLIQMQKT-EWKEETQLEISIPASRLADWLEVESKSL 100 Query: 79 SKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPF 138 + I+ + V+ P +ES F ++ RG ++ N L F Sbjct: 101 AATIKPVALRLQKRTVLAEHPTTHE-----FESSVLFPTVKYA--RGKLTMVPNYDLRDF 153 Query: 139 FIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS--LKIDWIIERYQLPQ 196 F + ++ + Y+ +Y+ L +++ P+ + + + I Sbjct: 154 FHDASKGYASVNVARFLRLRGKYSKPMYDLLSRFKTPEKQLYKTDVMTLKGIFGLVDDKD 213 Query: 197 SY-------QRMPDFRRRFLQVCVNEINS---------RTPMRLS----YIEKKKGRQTT 236 +Y + F + L + EI T IE K G + T Sbjct: 214 NYLPGKKTMKDTSVFVNQALVKSIEEIEEACSDEVMFFNTDPSGKKRHGIIENKTGNKIT 273 Query: 237 HIVFSF 242 I F + Sbjct: 274 SIEFEY 279 >UniRef50_Q8GI69 Replication protein n=4 Tax=Alphaproteobacteria RepID=Q8GI69_RHOBL Length = 339 Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 69/217 (31%), Gaps = 7/217 (3%) Query: 32 SRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAG 91 S ++++L + + H EI ++ +I G+ + + + + Sbjct: 35 SLAALKLMHLLIGKAGGRMAEPIRH----EIRLSDIRKIDGMKNHD-RASLTPLFAELSA 89 Query: 92 KEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRL 151 + PE+ G F R + L S + + Sbjct: 90 AVLTHDDPEKMVVTIGGLLDFARIDYRHEVSNDLLVSWYFGGAFREM-AEKSCHWAILDR 148 Query: 152 SETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQ 210 +++ Y++ L++ + D + + + +P +R D R L Sbjct: 149 QTVFALSSKYSILLFQHIASLVNLDHVASKTFTVAELRAVLGVPHGKMERWNDVNRFALT 208 Query: 211 VCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + EIN + + L+ K GR + ++ + Sbjct: 209 PAIAEINQTSRLILTATPNKIGRTVASVTITWAEKPP 245 >UniRef50_B9D168 Putative RepE replication protein n=1 Tax=Campylobacter rectus RM3267 RepID=B9D168_WOLRE Length = 260 Score = 68.7 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 12/201 (5%) Query: 52 TLQEHDGICEIHVAKYAEIF--GLTSAEASKDIRQALKS-FAGKEVVFYRPEEDAGDEKG 108 E+ G ++ ++ A + G+ + +I+ + K YR D++ Sbjct: 51 GYTENKGFIDMPYSELARFYEKGINKTRFNDEIKVFIDKVLGRKGSAIYRSITHTEDDEI 110 Query: 109 YESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYES 168 +F ++ + +N + G +F + L + I +A LY Sbjct: 111 LSVGVFFTDIDTFRNKQILRFRMNKRALDVLFG-TLKFMRINLYDFVAIRGKFAKTLYRL 169 Query: 169 LCQYRK----PDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRL 224 L QY DG V+ P+ Y D R +Q +NE+N +L Sbjct: 170 LQQYENIKPDKDGFKCVNFTRSDFENFMSAPECYGS-KDLDCRVIQPSINELNESYFKKL 228 Query: 225 SYIEK---KKGRQTTHIVFSF 242 + ++ K ++ F F Sbjct: 229 IFEKQISNKNKKEVVGYSFKF 249 >UniRef50_D0R6F1 Replication initiation protein n=1 Tax=Lactobacillus johnsonii FI9785 RepID=D0R6F1_LACJF Length = 447 Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 84/198 (42%), Gaps = 16/198 (8%) Query: 53 LQEHDGICEIHVAKYAEIFGLTSAEASKD-IRQALKSFAGKEVVFYRPEEDAGDEKGYES 111 L + D + +I ++K E+ + + I+++ + + E++ GD+K Y + Sbjct: 57 LDQKDNLIKIPISKVKELMYFRKHITNDEFIKKSNDTLKKFMTIQASLEQEDGDKKIYMN 116 Query: 112 FPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ 171 F + ++ + + ++P +F L ++T+F L + + Y+ +L+ L Q Sbjct: 117 VNIFSQ-SYIDTDYNAWIRVSPQATKYFNNLS-QWTRFALEQATRLHTSYSKKLFMYLKQ 174 Query: 172 YRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK- 230 +R G + ++ +P+SY+ ++ L + P +++ K Sbjct: 175 WRTV---GKKTFTLEEFRNALDVPKSYRP-GSIDQKILNPTAEYL---APYFMNFRITKN 227 Query: 231 -----KGRQTTHIVFSFR 243 +GR+ F+FR Sbjct: 228 YSKGIRGRKLIGYTFTFR 245 >UniRef50_B9ZQ30 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ30_9GAMM Length = 412 Score = 68.3 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 78/237 (32%), Gaps = 22/237 (9%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 + + + + L+ ++R+ + + + + +H I+++ A+ S Sbjct: 13 ILYKHTGVIHVSAPLTGLERRIYNVLLRHAQPHLRSHDQHS----INLSHLAQRLEYRSR 68 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLY--------S 128 + +R ++ K V F +D ++ W + + + Sbjct: 69 NRAHLVRSI-EALHTKPVKFNILGKDKKNQD-----QWVAMQGYLLAEIGIGRDDPDICY 122 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYES-LCQYRKPDGSGIVSLKIDW 187 P + +T+ L ++N +A+ L+E L S + + +D Sbjct: 123 YSFGPNMARLLAD-PAIYTRLSLESQNRLSNKHAIALHEFYLAALPAHLHSIRLDVAVDT 181 Query: 188 IIERYQLP-QSYQRMPDFRRRFLQVCVNEINSRTPMRLS-YIEKKKGRQTTHIVFSF 242 E L SY + R R L+ +I+ + + + ++ I Sbjct: 182 YCELLCLSSASYGQYKHLRARVLEPAHRDISENGDIEVEQVDQTRRRNAVVSITVRI 238 >UniRef50_Q46019 RepB protein n=1 Tax=Campylobacter coli RepID=Q46019_CAMCO Length = 253 Score = 67.6 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 17/189 (8%) Query: 39 LYLFVDQIRKSDGT--------LQEHDGICEIHVAKYAEIFGLTSAEA-SKDIRQALKSF 89 +++ + + K I K+ E+ L ++ K+I A+ Sbjct: 26 MFMAIISLTKDKKENTPFLKKFFNPDKRKIIIPQKKFIELCRLNDSKMDYKEIFFAIDDC 85 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 K F + DE+ +F F + + + I + FT F Sbjct: 86 LKKLCNFLVSYQ--KDERTIYNFVCFEEANIIADE--VHITLQSRFYDMIINKKFGFTAF 141 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 L+E E++ Y LY L Q+R +G + + ++P++Y+++ D +R L Sbjct: 142 ELAEFAELSGKYTKTLYRLLKQFRT---TGKAYFEWEEFCRIMKIPENYRQI-DIDQRIL 197 Query: 210 QVCVNEINS 218 + + E++ Sbjct: 198 KPAIKELSK 206 >UniRef50_C4IXH5 Putative replication protein n=1 Tax=Clostridium botulinum RepID=C4IXH5_CLOBO Length = 157 Score = 67.6 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%) Query: 169 LCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIE 228 + + + + I KI+ + Y + +F +R L V E+N M + E Sbjct: 1 MRLWSRTNEYIIKEFKIEDLRFVLATENKYPKYKNFNQRVLSPAVKELNETGNMEIVTTE 60 Query: 229 KKKGRQTTHIVFSFRDITSM 248 K GR+ I F D Sbjct: 61 IKSGRKVAKIQFKILDREPK 80 >UniRef50_Q46503 ORF135 n=1 Tax=Desulfovibrio desulfuricans RepID=Q46503_DESDE Length = 135 Score = 66.8 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 184 KIDWIIERYQLPQSY-QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 + + E P S ++ PDFRR+ L+ +IN T + + K GR I F F Sbjct: 10 SLADLHEMVGTPPSLRKKYPDFRRKVLEKAHKDINRHTALAYEWEAVKNGRSVAGIRFLF 69 Query: 243 RDI 245 Sbjct: 70 AQK 72 >UniRef50_A9KCY2 Putative uncharacterized protein n=1 Tax=Coxiella burnetii Dugway 5J108-111 RepID=A9KCY2_COXBN Length = 313 Score = 66.4 bits (161), Expect = 7e-10, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 65/212 (30%), Gaps = 16/212 (7%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 L+ +R+ + + I + A ++G+ ++++L+ Sbjct: 21 LTLSDRRLYNYLLHNA----LDVLSKRLSFTISMTGLAGVYGVRLPPI-DRLKESLRRLM 75 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 + + + + K + G + + FT R Sbjct: 76 RTLIEYET------APGKWTTISLLDKAELDETEGQLYYCFSVDCRWLYSD---PFTLER 126 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFL 209 Y LYE L G +S++I + Q+ D R L Sbjct: 127 CLIQAHFIQKYTHSLYELLAS-AHYAGQSTLSIEIMDLRGSLQISDNKLINYSDLDRFAL 185 Query: 210 QVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 V EIN+ + Y ++KG + T ++F Sbjct: 186 IPAVKEINAYASFAVKYHTQRKGMKVTKVIFE 217 >UniRef50_A1VV49 Initiator RepB protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV49_POLNA Length = 433 Score = 66.4 bits (161), Expect = 8e-10, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 84/229 (36%), Gaps = 22/229 (9%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 LS Q+++L ++ + T + +G I + G S ++++ ++ Sbjct: 39 LSLVQRKLLN---SWLKNAANTPHDSEGWWAIRIDAVCNEIGFNSNN-RSYLKESSEALM 94 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 + + + A +EK + +R L I+ L + + + Sbjct: 95 R---IIFTWDVLAPEEKRARWKASVLFPEVEITRYLIKYQISSQLQAHILKPE----MYA 147 Query: 151 LSETKEITNPY----AMRLYESLCQYRKPDGSGIVSLKIDWIIER-YQL---PQSYQRMP 202 L + + Y + +YE ++ K + + ++ + + +SY+ Sbjct: 148 LIDQAVLR-KYRRAASAGIYEHCIRFEKINQTP--AIPWQEFRDIILGVSADKKSYKEYK 204 Query: 203 DFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 F+++ L C+ EIN+ +++ E K G+ + F + T Sbjct: 205 SFKQKVLNPCIAEINAEGAIQIELRETKVGKTVEGVFFKVQKPKLAATS 253 >UniRef50_D1AFD6 Putative uncharacterized protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AFD6_SEBTE Length = 429 Score = 64.9 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 88/220 (40%), Gaps = 15/220 (6%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 +++ +K L +++I+ + E + EI V +F + + ++ + + SF Sbjct: 59 KINKREKFFLEFLIEKIKNNFENPNEKTLVFEIEV-----LFKVLNITEKEEFERFMNSF 113 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 + K +++ + + +G + + + + + I+ F +N F + Sbjct: 114 SEKRIIYKCKKFNLLTFEG----SLYPVASFEFNDEKFYIDISEKFYSIFSAEENNFKEL 169 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 + + +L+ L + + + + + +++ E +L +Y R DF + L Sbjct: 170 YFDILLQFDSMIVKKLFLFLINNKSINDT--LEVSEEYLKEYLELSNTYDRFYDFEKNVL 227 Query: 210 QVCVNEINSRTPMRLSYIEKKKG----RQTTHIVFSFRDI 245 + + +I TP+++ Y + K + I F D Sbjct: 228 KKSIAQIEKYTPLKIKYEKIKNKSYLNSKIVGIKFYIIDN 267 >UniRef50_Q11ZC6 Initiator RepB protein n=1 Tax=Polaromonas sp. JS666 RepID=Q11ZC6_POLSJ Length = 431 Score = 64.5 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 78/219 (35%), Gaps = 20/219 (9%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 L+ QK+M ++K++ + + DG + + + S K ++ + + Sbjct: 40 ELTATQKKMFN---HWLKKANSSEPDADGFWTVRIDEMMVAIDFNSKN-RKFLKDSATAL 95 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 V + + + K + + I+ + P + + + Sbjct: 96 QR---VIFAWDVITPEAKRSKWKSSVPFPDVEITSSTIRFRISAEVKPHVVNPE----IY 148 Query: 150 RLSE---TKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP----QSYQRMP 202 L + K+ ++ +YE +++K + IV I + ++Y++ Sbjct: 149 ALVDEAVVKKYRRVGSIGIYEHCVRFQKLGNTAIVPWPI--FRDMILGKSAGRKTYEQYK 206 Query: 203 DFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 F+ + L + E+N+ + + E K G+ + F Sbjct: 207 VFKAKVLNPSIAEVNAEGAISVELRETKVGKTVEGVFFK 245 >UniRef50_Q21QA3 Putative uncharacterized protein n=2 Tax=Comamonadaceae RepID=Q21QA3_RHOFD Length = 505 Score = 64.1 bits (155), Expect = 4e-09, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 69/224 (30%), Gaps = 21/224 (9%) Query: 38 MLYLFVDQIRKSDGTLQEHDGICEIH----VAKYAEIFGLTSAEASKDIRQALKSFAGKE 93 ++ ++R D + I + + G+ K I + L Sbjct: 72 LIAQLDFKLRPRDQVARIKTERISITFETRITDLVRLAGIPGKN-YKRIYEDLDFLFEMI 130 Query: 94 VVFYRPEEDAGDEKGYES-FPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLS 152 + + +EDA +S F + RG +P ++ + N T L Sbjct: 131 LKWNVLDEDAAVAFEMKSHFFTMLGIGVGHKRGAIRFSFHPDVMDIVLEPSNWAT-LSLK 189 Query: 153 ETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSY------------QR 200 + + LY+ +Y SL + I+ P Y Sbjct: 190 AMDGLGTLPSYALYQQTFRYLGTTAKCTASLPTETWIDLLLGPSRYVKTDPATGKKTVTS 249 Query: 201 MPDFRRRFLQVCVNEINSRT--PMRLSYIEKKKGRQTTHIVFSF 242 DF+RR L + +N L EK+ G + + + F F Sbjct: 250 YGDFKRRVLNDAITRVNEAKALNYTLRLDEKRAGNRVSKLQFFF 293 >UniRef50_C3EDF6 Initiator RepB protein n=1 Tax=Bacillus thuringiensis serovar pakistani str. T13001 RepID=C3EDF6_BACTU Length = 244 Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Query: 165 LYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRL 224 +YE L QY + +L + + Y +F++R L+ E+ + T + Sbjct: 1 MYELLKQY---EIVKERTLLLQTLRYYVDAINIYPNYANFKQRILKPVQKELRASTDISF 57 Query: 225 SYIEKKKGRQTTHIVFSF 242 + E KKGR+ I F Sbjct: 58 EFKEIKKGRKVYKIKFYI 75 >UniRef50_UPI0001660050 hypothetical protein pPS41_00035 n=1 Tax=Vibrio sp. 41 RepID=UPI0001660050 Length = 272 Score = 63.7 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 8/135 (5%) Query: 100 EEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITN 159 + A + E K + G+ SV ++P+ I L + +T T Sbjct: 55 KHKAKNSSKVEYINVISKASVE--EGVLSVRFTDDILPYLINLSS-YTTIPFKATVGFNC 111 Query: 160 PYAMRLYE-SLCQYRKPDGSGIVSLKIDWIIERYQLP--QSYQRMPDFRRRFLQVCVNEI 216 Y+ + E L +Y K + + + + +SYQ F++R L + Sbjct: 112 NYSFAMLEHLLKRYTKGGDYPSHDIPLADLHQILGTNTVKSYQVWSSFKKRALDAIEKDF 171 Query: 217 NSRT--PMRLSYIEK 229 + +S+ Sbjct: 172 SLIAGGGYEISFEPV 186 >UniRef50_D1AQA4 Putative uncharacterized protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQA4_SEBTE Length = 393 Score = 63.7 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 11/188 (5%) Query: 67 YAEIFGLTSAEASKDIRQA---LKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 + + L A KD Q + K++ + E D G+ S ++ Sbjct: 49 FFDTENLKKALNYKDDSQIPVFFEKLMSKKIRYTISENDDILYSGFFSI----INSYFHG 104 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 + ++ L F N F+ + + + P +++LYE + +SL Sbjct: 105 NNKTGISVSQELKMSFRE-NNFFSCYNFEKYIFMEEPASLKLYEYINS---TAPRDFLSL 160 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 + + + L +Y R DF + L+ + +IN + +++ Y K + F+ Sbjct: 161 SLTELKDILGLKDAYVRFFDFEKYILKKIIKDINLFSDIKIEYQRHKSSNTLINFFFTKN 220 Query: 244 DITSMTTG 251 + + T Sbjct: 221 ENSIYNTS 228 >UniRef50_D0GP72 Initiator RepB protein n=2 Tax=Leptotrichia goodfellowii F0264 RepID=D0GP72_9FUSO Length = 406 Score = 62.2 bits (150), Expect = 1e-08, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 18/236 (7%) Query: 20 QSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEAS 79 Q N E + +++++K L L +I L+ +I + + + +S Sbjct: 15 QKNINLEFSKKITKNEKTFLKLIFFKIISDFSLLEN----MKIKLEELSNNTEFSSITDY 70 Query: 80 KDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFF 139 +K+ + K + F E + FI + + F Sbjct: 71 SL---FIKNLSEKRIFFSVSSSSEKYEGSFGIISSFI-----LNIDSVLLFFTEEFKSCF 122 Query: 140 IGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQ 199 +N F+ + + ++ ++ LY ++ + + S + L I + Y Sbjct: 123 SNKKNFFSLLEIEKFIFMSESFSFSLYNNIL--KNFENSKEIILPISSLKMYLNSDNKYS 180 Query: 200 RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKG----RQTTHIVFSFRDITSMTTG 251 R DF + L+ V++IN T +SY + K+G + T I F M T Sbjct: 181 RFFDFEKYILKKAVSDINIFTTFNISYKKIKEGTKLTNKITSITFFVEKSKHMNTS 236 >UniRef50_A1X019 RepE replication protein, putative n=1 Tax=Campylobacter jejuni subsp. jejuni 81-176 RepID=A1X019_CAMJJ Length = 278 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 13/176 (7%) Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 +++ + + D + Y +F + + I Sbjct: 68 NKKRFYENVVEFALKLNN--LKTSNLTLDNEGYRIYSVSSFFDEITVNEKEEKIVFKIKE 125 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 + + + +T L +I+N Y LY L Q++ G+G + + Sbjct: 126 KWLDLIVNVVREYTILDLRNFCKISNKYTKNLYRYLSQWQ---GTGEFIIPFEKFNLLLD 182 Query: 194 LPQSYQRMPDFRRRFLQVCV---NEINSRTPMRLSYIEKKK----GRQTTHIVFSF 242 +P SY + +R + + E N + + K G Q T F+F Sbjct: 183 IPASY-DIDKIEQRIIFPSIKLFKENNYFKNLEYIKEKDKTKQGQGGQVTTFTFTF 237 >UniRef50_D1ANW6 Initiator RepB protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ANW6_SEBTE Length = 389 Score = 61.4 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 68/192 (35%), Gaps = 13/192 (6%) Query: 52 TLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYES 111 + ++ L + ++ L K+V++ EEDA G + Sbjct: 40 NFDLASPYISLDSKDLIKVLNLDTDSK---LQDFLHKITDKKVLYSITEEDAVIYSG--A 94 Query: 112 FPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ 171 F + + + L F +N F+ F + + ++ LY L Sbjct: 95 FSPVSS--YFQKKEKIYIFTAEELKLFLTE-ENIFSHFNFKKFIFMEKNLSLILYNHL-- 149 Query: 172 YRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 + +S+ + + E + L SY R+ DF + L+ V IN T + + Y + Sbjct: 150 -NNILPANTLSVTVTELKELFGLEDSYNRIYDFEKYILKKIVKNINKYTDLEVKYEKPAH 208 Query: 232 GRQTTHIVFSFR 243 I F+F+ Sbjct: 209 SGSV--INFTFK 218 >UniRef50_Q4A151 Putative replication protein RepA n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q4A151_STAS1 Length = 170 Score = 61.0 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 5/126 (3%) Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 S+ +NP + F +S+ + + Y+ LY +Y+ + I Sbjct: 44 KLSITLNPDFVYLLNNFDENSICFSMSDFTNLKSIYSKHLYRLFTEYQDES---TYTFSI 100 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK-KKGRQTTHIVFSFRD 244 + E + Y M D + L++ E+N Y + + ++ T I F+F Sbjct: 101 EAFREFLDINSKYPHMKDIDKPVLRMIKEELNQFYQY-FEYKKVLEMPQRVTEIKFNFIK 159 Query: 245 ITSMTT 250 + + T Sbjct: 160 VKNSCT 165 >UniRef50_B1Z6C2 Putative uncharacterized protein n=3 Tax=Burkholderia RepID=B1Z6C2_BURA4 Length = 465 Score = 59.9 bits (144), Expect = 7e-08, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 76/224 (33%), Gaps = 15/224 (6%) Query: 22 NDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKD 81 N L L +R++ + + + +D Y + S+ + Sbjct: 41 NILIR-IVDLGVSARRLIDAAYFIVAQEERVHDLYDVEL-----DYFKWLMRYSSRNNAH 94 Query: 82 IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIG 141 + Q + A K ++ +K + S + + G + + LI G Sbjct: 95 LEQVITE-AQKALIQATTAPTLDGDKPFGSVQLIGRVSF--QGGRFQFRVPTDLISIIRG 151 Query: 142 LQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE-RYQLPQSYQR 200 L T T YA +Y+ L + G+ L +D + + ++ + Sbjct: 152 PGKSH-WLSLRITSLFTLSYARVMYDHLLPFADEGGTDW--LTLDELRGWQGEMGANALV 208 Query: 201 MPDFRRRFLQVCVNEINSRTPMRLSYIEKKK--GRQTTHIVFSF 242 F+R +L+ V +IN + + L Y + + R+ + F Sbjct: 209 FKYFKRDWLEPAVKQINELSDITLEYETRNEPGSRKIGRLRFRI 252 >UniRef50_C5D170 Putative replication protein n=1 Tax=Variovorax paradoxus S110 RepID=C5D170_VARPS Length = 457 Score = 59.9 bits (144), Expect = 8e-08, Method: Composition-based stats. Identities = 28/237 (11%), Positives = 72/237 (30%), Gaps = 19/237 (8%) Query: 15 SPRIVQSNDLTE---AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + ++N+ L+ +R+ + ++ + + + +++ Sbjct: 21 EQSVAKANEAIAIRPKRGRLTLLSRRIYNALLYHSQRQGVD----EPVYRLTLSELIGDA 76 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP-SRGL---Y 127 S + ++ + + K + S RG Sbjct: 77 RFNSNNT-ELLKS---HLRDMQATTIEWSTSSSSLKRWVSSQLLGTVTIEEQGRGRPCMV 132 Query: 128 SVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW 187 + + + +++T+ L + ++ + A LYE +Y G + + W Sbjct: 133 TWRYPDEIKERLVK-PHQYTRVLLEMSSQMRSYSAAVLYEIGARYLTSPGRLSMREDVVW 191 Query: 188 IIERYQLPQSYQ--RMPDFRRRFLQVCVNEINSR-TPMRLSYIEKKKGRQTTHIVFS 241 + +R + + EI++ L IE K+GR+ I F Sbjct: 192 WAAVLTGRSDIKEVDYRFLKRDVISKALAEIDALCEDFGLELIEHKRGRKIEEIQFR 248 >UniRef50_C5EXK6 RepA n=1 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5EXK6_9HELI Length = 232 Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 6/146 (4%) Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 +I + + Y +ED + SF F + + S I+ Sbjct: 67 NKKRFYGNIVEFARKLNSLSTKEYNIDEDGYRKFSINSF--FEQIEVDEKNEILSFRISK 124 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 + + R+T F + + EI Y L+ L Q+ +GSG + + + + Sbjct: 125 KSLYLIYEVFQRYTIFDMKDFCEIKGKYTKNLFRLLKQW---EGSGKFQINYENFLVLFD 181 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSR 219 +P+SY + ++ ++ +N + Sbjct: 182 IPKSYTAFF-IEDKVIKPSIDLLNGK 206 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q46146 RepA n=3 Tax=root RepID=Q46146_9GAMM 217 2e-55 UniRef50_P62538 Replication initiation protein n=30 Tax=root Rep... 214 2e-54 UniRef50_Q2LA81 Replication initiator-like protein n=1 Tax=Larib... 213 4e-54 UniRef50_C5SD11 Initiator RepB protein n=2 Tax=Allochromatium vi... 199 1e-49 UniRef50_P95424 Replication initiator protein n=3 Tax=Pseudomona... 196 5e-49 UniRef50_A3MAB7 DNA replication protein n=29 Tax=cellular organi... 194 3e-48 UniRef50_C8Q373 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b... 189 6e-47 UniRef50_Q6XUP4 RepA n=4 Tax=Pseudomonas RepID=Q6XUP4_9PSED 189 7e-47 UniRef50_Q6J2B8 Replication protein n=2 Tax=Gammaproteobacteria ... 189 8e-47 UniRef50_D0SRM6 Replicase n=2 Tax=Acinetobacter RepID=D0SRM6_ACIJU 188 1e-46 UniRef50_C8PWL8 DNA replication protein n=1 Tax=Enhydrobacter ae... 188 2e-46 UniRef50_D0WD49 Initiator RepB protein n=3 Tax=Neisseria RepID=D... 187 3e-46 UniRef50_C5SDE1 Initiator RepB protein n=1 Tax=Allochromatium vi... 187 4e-46 UniRef50_C9S245 Initiator RepB protein n=7 Tax=Geobacillus RepID... 186 7e-46 UniRef50_B2UKE3 Initiator RepB protein n=2 Tax=Ralstonia pickett... 183 6e-45 UniRef50_C0VLN3 Replication protein n=6 Tax=Acinetobacter RepID=... 181 2e-44 UniRef50_C6RK77 DNA replication protein n=2 Tax=Acinetobacter ra... 179 8e-44 UniRef50_B0VVG2 Replication protein n=4 Tax=Acinetobacter RepID=... 179 9e-44 UniRef50_B3AF43 Plasmid replication protein n=4 Tax=Enterobacter... 177 3e-43 UniRef50_UPI00004A2E95 putative replication initiator protein n=... 177 4e-43 UniRef50_C6QRE9 Initiator RepB protein n=1 Tax=Geobacillus sp. Y... 176 5e-43 UniRef50_C8PV39 DNA replication protein n=1 Tax=Enhydrobacter ae... 176 6e-43 UniRef50_A7M7E8 RepA n=5 Tax=Enterobacteriaceae RepID=A7M7E8_9ENTR 176 7e-43 UniRef50_C6RSQ0 Replicase n=4 Tax=Acinetobacter RepID=C6RSQ0_ACIRA 174 2e-42 UniRef50_Q2RYM1 Initiator replication protein RepB n=1 Tax=Salin... 173 3e-42 UniRef50_Q6TV38 Putative replication initiator protein n=1 Tax=B... 172 8e-42 UniRef50_D0V0D3 RepA n=1 Tax=Moraxella bovis RepID=D0V0D3_MORBO 171 2e-41 UniRef50_B1FHX4 Initiator RepB protein n=2 Tax=Burkholderia ambi... 171 2e-41 UniRef50_C4GNB8 Putative uncharacterized protein n=1 Tax=Kingell... 170 3e-41 UniRef50_A0R878 Initiator RepB protein n=1 Tax=Pelobacter propio... 170 5e-41 UniRef50_D2TVA4 Plasmid replication protein n=2 Tax=Enterobacter... 170 5e-41 UniRef50_B0VVF3 DNA replication protein n=7 Tax=Acinetobacter Re... 169 8e-41 UniRef50_Q0QVX3 PNL18.2_p1 n=2 Tax=Neisseria lactamica RepID=Q0Q... 168 2e-40 UniRef50_C5S4L5 Replication protein n=3 Tax=Pasteurellaceae RepI... 168 2e-40 UniRef50_Q1Q7S1 Initiator RepB protein n=3 Tax=Bacteria RepID=Q1... 167 4e-40 UniRef50_A0S0J1 Rep n=2 Tax=Acinetobacter RepID=A0S0J1_9GAMM 166 8e-40 UniRef50_UPI0001C42EDF initiator RepB protein n=1 Tax=Bacillus p... 165 8e-40 UniRef50_Q0HPE2 Initiator RepB protein n=2 Tax=Gammaproteobacter... 165 1e-39 UniRef50_A0A1K9 Replication protein n=7 Tax=Enterobacteriaceae R... 165 1e-39 UniRef50_D0T0I0 DNA replication protein n=4 Tax=Acinetobacter Re... 165 2e-39 UniRef50_A7FCM5 Plasmid replication protein n=1 Tax=Yersinia pse... 165 2e-39 UniRef50_P17492 Replication protein n=8 Tax=Proteobacteria RepID... 162 1e-38 UniRef50_B0VVD6 Putative replication protein n=1 Tax=Acinetobact... 162 1e-38 UniRef50_Q0QVZ7 Putative replication initiator protein n=2 Tax=N... 161 2e-38 UniRef50_A9VVF2 Initiator RepB protein n=14 Tax=Bacillus cereus ... 160 4e-38 UniRef50_Q2B8G7 Replication initiator protein n=1 Tax=Bacillus s... 160 6e-38 UniRef50_A6DT85 Replication initiator protein n=1 Tax=Lentisphae... 159 8e-38 UniRef50_B5EWH3 Plasmid replication protein n=2 Tax=Enterobacter... 159 8e-38 UniRef50_A1U7R0 Initiator RepB protein n=1 Tax=Marinobacter aqua... 158 2e-37 UniRef50_C8PXW7 DNA replication protein n=1 Tax=Enhydrobacter ae... 158 2e-37 UniRef50_A8UX05 Replication initiator protein n=1 Tax=Hydrogeniv... 158 2e-37 UniRef50_D2QW11 Initiator RepB protein n=2 Tax=Spirosoma lingual... 157 4e-37 UniRef50_D0SHJ5 DNA replication protein n=1 Tax=Acinetobacter jo... 157 5e-37 UniRef50_Q6LPZ0 Hypothetical replication initiation protein n=1 ... 155 1e-36 UniRef50_Q52204 Putative plasmid replication protein n=2 Tax=pla... 155 2e-36 UniRef50_Q2A6M6 Replication protein B n=3 Tax=Pasteurellaceae Re... 154 2e-36 UniRef50_UPI0001AF0368 DNA replication protein n=1 Tax=Acinetoba... 154 2e-36 UniRef50_Q629K5 Replication protein n=2 Tax=Haemophilus somnus 1... 152 1e-35 UniRef50_D0U573 Replication initiation protein RepB-like protein... 149 9e-35 UniRef50_Q1PHH6 PCZ2.1 n=1 Tax=Planococcus sp. ZOYM RepID=Q1PHH6... 149 1e-34 UniRef50_Q45152 RepA protein n=3 Tax=Bacteroides RepID=Q45152_BACFR 148 1e-34 UniRef50_Q0SW56 Initiator RepB protein family n=4 Tax=Clostridiu... 148 2e-34 UniRef50_B5KF63 Initiator RepB protein n=1 Tax=Octadecabacter an... 147 2e-34 UniRef50_C9MTU8 Initiator RepB protein n=2 Tax=Bacteroidales Rep... 145 1e-33 UniRef50_D2QW27 Initiator RepB protein n=1 Tax=Spirosoma lingual... 145 1e-33 UniRef50_C9KZX8 Initiator RepB protein n=4 Tax=Bacteroides RepID... 144 2e-33 UniRef50_Q3HYC5 Rep n=1 Tax=Actinobacillus pleuropneumoniae RepI... 144 3e-33 UniRef50_Q3IEM2 Putative RepA n=1 Tax=Pseudoalteromonas haloplan... 142 9e-33 UniRef50_Q8VQM9 Replication protein n=2 Tax=Prevotella RepID=Q8V... 142 1e-32 UniRef50_B9VWK0 Putative replication protein n=1 Tax=Pseudomonas... 142 1e-32 UniRef50_A7GJQ6 RepB family protein n=1 Tax=Clostridium botulinu... 142 1e-32 UniRef50_B5Z4W0 Plasmid replication protein n=1 Tax=Escherichia ... 141 3e-32 UniRef50_C6ZBN9 Replication protein n=1 Tax=Bacteroides sp. 4_3_... 141 3e-32 UniRef50_A3PQH1 Plasmid replication initiation protein n=18 Tax=... 140 4e-32 UniRef50_A6XA85 Rep n=1 Tax=Bifidobacterium bifidum RepID=A6XA85... 140 5e-32 UniRef50_Q2A086 Putative replication protein n=1 Tax=Sodalis pha... 139 7e-32 UniRef50_A4JWE3 Initiator RepB protein n=1 Tax=Burkholderia viet... 138 2e-31 UniRef50_Q9LAL2 Putative uncharacterized protein n=1 Tax=Moraxel... 138 2e-31 UniRef50_C8PV51 Replication protein n=1 Tax=Enhydrobacter aerosa... 138 2e-31 UniRef50_Q02V81 Replication initiator protein n=74 Tax=root RepI... 138 2e-31 UniRef50_D2U1L9 Phage transcriptional regulator n=1 Tax=Arsenoph... 137 3e-31 UniRef50_A2SMS3 Putative uncharacterized protein n=1 Tax=Methyli... 136 8e-31 UniRef50_A8V5F5 Replication initiator protein (Fragment) n=2 Tax... 136 9e-31 UniRef50_Q3T4G0 RepA n=1 Tax=Capnocytophaga ochracea RepID=Q3T4G... 135 1e-30 UniRef50_B2JUN4 Initiator RepB protein n=1 Tax=Burkholderia phym... 135 1e-30 UniRef50_C5H432 Initiator RepB protein family n=1 Tax=Arcobacter... 135 2e-30 UniRef50_Q46088 Replicase n=2 Tax=Bacteria RepID=Q46088_CAMHY 134 3e-30 UniRef50_Q83Z35 RepB n=4 Tax=Helicobacter pylori RepID=Q83Z35_HELPY 134 3e-30 UniRef50_B1BR22 Initiator RepB protein family n=1 Tax=Clostridiu... 133 4e-30 UniRef50_UPI00004A2E9C replication protein n=1 Tax=Moraxella bov... 133 6e-30 UniRef50_P22308 Replication initiation protein n=12 Tax=root Rep... 132 8e-30 UniRef50_C3S7V4 Rep n=1 Tax=Streptococcus parasanguinis RepID=C3... 132 9e-30 UniRef50_Q9X3R7 Replicase n=2 Tax=Riemerella anatipestifer RepID... 132 1e-29 UniRef50_A6TSD9 Initiator RepB protein n=1 Tax=Alkaliphilus meta... 132 1e-29 UniRef50_C3RRC7 Putative uncharacterized protein n=1 Tax=Mollicu... 132 1e-29 UniRef50_D1PMT8 Putative replication initiator protein n=1 Tax=S... 131 1e-29 UniRef50_A1BC50 Initiator RepB protein n=1 Tax=Paracoccus denitr... 131 1e-29 UniRef50_Q8ETT4 Replication protein n=1 Tax=Oceanobacillus iheye... 131 2e-29 UniRef50_C0EYN5 Putative uncharacterized protein n=1 Tax=Eubacte... 131 2e-29 UniRef50_C8Q107 Replication protein n=2 Tax=Enhydrobacter aerosa... 131 2e-29 UniRef50_UPI000197AD3E hypothetical protein BACCOPRO_01779 n=1 T... 130 3e-29 UniRef50_B5A7F5 RepA n=2 Tax=Bacteroides RepID=B5A7F5_BACUN 130 4e-29 UniRef50_B6YS87 Replication protein A n=4 Tax=Candidatus Azobact... 130 4e-29 UniRef50_D2MK96 Plasmid replication initiation protein n=6 Tax=C... 130 4e-29 UniRef50_A0R7R9 Initiator RepB protein n=1 Tax=Pelobacter propio... 129 8e-29 UniRef50_Q97TD7 Replication protein, repA n=1 Tax=Clostridium ac... 128 2e-28 UniRef50_P18351 Uncharacterized 27.6 kDa protein n=19 Tax=root R... 128 2e-28 UniRef50_C6BQP5 Replication protein n=3 Tax=Ralstonia RepID=C6BQ... 126 5e-28 UniRef50_B6D407 RepA n=1 Tax=Capnocytophaga canimorsus RepID=B6D... 126 6e-28 UniRef50_D2QW12 Initiator RepB protein n=1 Tax=Spirosoma lingual... 126 7e-28 UniRef50_B6J9Q7 Plasmid replication initiation protein n=12 Tax=... 126 9e-28 UniRef50_O68836 RepA n=3 Tax=Francisella RepID=O68836_FRATU 125 1e-27 UniRef50_Q6R586 Replication protein A n=1 Tax=Ornithobacterium r... 125 1e-27 UniRef50_A0R7S0 Initiator RepB protein n=1 Tax=Pelobacter propio... 125 2e-27 UniRef50_Q2T2N9 Plasmid replication protein, putative n=76 Tax=B... 125 2e-27 UniRef50_B5TTF0 Putative uncharacterized protein rep n=3 Tax=env... 125 2e-27 UniRef50_Q93NB4 RepB n=11 Tax=Lactobacillales RepID=Q93NB4_9LACT 124 2e-27 UniRef50_C7UIY7 Initiator Replication protein n=9 Tax=Lactobacil... 124 2e-27 UniRef50_D0UIP0 Replication initiator protein n=1 Tax=Aggregatib... 124 2e-27 UniRef50_Q83XW3 RepA n=1 Tax=Flavobacterium psychrophilum RepID=... 124 3e-27 UniRef50_B0V3W3 Putative replication protein n=2 Tax=Acinetobact... 123 4e-27 UniRef50_Q8GN68 RepB n=6 Tax=Bifidobacterium longum RepID=Q8GN68... 123 4e-27 UniRef50_D2QUY6 Initiator RepB protein n=1 Tax=Spirosoma lingual... 123 6e-27 UniRef50_Q19N19 Replication initiation protein n=2 Tax=Campyloba... 123 7e-27 UniRef50_B1F975 Plasmid replication initiation protein n=1 Tax=B... 121 2e-26 UniRef50_C5B575 Putative uncharacterized protein n=1 Tax=Methylo... 121 2e-26 UniRef50_O69393 Replication protein n=1 Tax=Ruminococcus albus R... 121 2e-26 UniRef50_Q4HN85 Initiator RepB protein family n=1 Tax=Campylobac... 121 2e-26 UniRef50_D0DD73 Initiator RepB protein n=2 Tax=Rhodobacteraceae ... 121 3e-26 UniRef50_Q3ZR50 Putative uncharacterized protein n=1 Tax=Lactoba... 120 3e-26 UniRef50_Q8GN33 Probable replication protein rep n=12 Tax=Bacter... 120 4e-26 UniRef50_C4QRD6 Replication protein , putative (Fragment) n=1 Ta... 120 5e-26 UniRef50_C6XEL6 Initiator RepB protein n=1 Tax=Methylovorus sp. ... 120 6e-26 UniRef50_C4B6A3 Putative replication protein n=3 Tax=Clostridium... 119 7e-26 UniRef50_C6BQ44 Initiator RepB protein n=1 Tax=Ralstonia pickett... 119 8e-26 UniRef50_B4RHW9 Replication initiator protein n=2 Tax=Alphaprote... 119 9e-26 UniRef50_B7LJA1 PI protein (Replication initiation protein) n=1 ... 119 9e-26 UniRef50_A5VGG8 Initiator RepB protein n=1 Tax=Sphingomonas witt... 118 2e-25 UniRef50_D0I2S1 Replication protein n=1 Tax=Grimontia hollisae C... 118 2e-25 UniRef50_C9A1Q4 Replication protein n=8 Tax=Lactobacillales RepI... 118 2e-25 UniRef50_A7ZGH9 Putative pNL871104_p1 n=1 Tax=Campylobacter conc... 116 6e-25 UniRef50_C2F289 Replication initiator protein n=6 Tax=Lactobacil... 116 7e-25 UniRef50_C0QUY9 Putative replication initiation protein n=1 Tax=... 116 9e-25 UniRef50_Q1ENI4 RepB n=2 Tax=Lactobacillus RepID=Q1ENI4_LACPL 115 2e-24 UniRef50_D0SGM0 Putative uncharacterized protein n=1 Tax=Acineto... 115 2e-24 UniRef50_D0SHA2 Replication protein n=1 Tax=Acinetobacter johnso... 114 2e-24 UniRef50_D2QVG7 Initiator RepB protein n=1 Tax=Spirosoma lingual... 114 3e-24 UniRef50_B0V3Y6 Putative replication protein n=2 Tax=Acinetobact... 113 4e-24 UniRef50_D1PH89 Initiator RepB protein n=1 Tax=Prevotella copri ... 113 4e-24 UniRef50_C9NQ31 Replication protein n=3 Tax=Vibrio RepID=C9NQ31_... 113 5e-24 UniRef50_A9M546 Replication initiation protein n=19 Tax=Vibrio R... 113 6e-24 UniRef50_C0BF49 Putative uncharacterized protein n=1 Tax=Coproco... 112 1e-23 UniRef50_Q52180 RepA n=1 Tax=Lactobacillus acidophilus RepID=Q52... 111 2e-23 UniRef50_A9M4V2 Replication initiation protein RepB n=1 Tax=Vibr... 111 2e-23 UniRef50_B9B6L3 Initiator RepB protein n=17 Tax=Burkholderia Rep... 111 2e-23 UniRef50_A1ZVZ5 Initiator RepB protein n=1 Tax=Microscilla marin... 110 3e-23 UniRef50_A4JUI4 Putative uncharacterized protein n=1 Tax=Burkhol... 110 4e-23 UniRef50_Q3BZT2 Putative replication protein n=1 Tax=Xanthomonas... 110 4e-23 UniRef50_B6YSC3 Replication protein A n=1 Tax=Candidatus Azobact... 109 8e-23 UniRef50_B6YSB4 Replication protein A n=2 Tax=Candidatus Azobact... 109 1e-22 UniRef50_Q68BL4 Replication protein n=2 Tax=Lactobacillus RepID=... 109 1e-22 UniRef50_B0ZE01 PI protein n=10 Tax=Gammaproteobacteria RepID=B0... 108 2e-22 UniRef50_C5SZF3 Initiator RepB protein n=1 Tax=Acidovorax delafi... 108 2e-22 UniRef50_D1XV24 Initiator RepB protein n=1 Tax=Prevotella bivia ... 108 2e-22 UniRef50_B9ZQ30 Putative uncharacterized protein n=1 Tax=Thioalk... 106 6e-22 UniRef50_UPI00016C5BA2 putative replication protein n=1 Tax=Clos... 106 6e-22 UniRef50_C5D170 Putative replication protein n=1 Tax=Variovorax ... 106 7e-22 UniRef50_A8EVY6 Replication protein n=1 Tax=Arcobacter butzleri ... 106 9e-22 UniRef50_Q06362 ORF195 n=1 Tax=Desulfovibrio desulfuricans RepID... 105 1e-21 UniRef50_C7C2U9 Plasmid replication protein n=1 Tax=Staphylococc... 105 1e-21 UniRef50_B6YSE0 Replication protein A n=1 Tax=Candidatus Azobact... 105 2e-21 UniRef50_Q6AI77 Related to replication protein RepA n=1 Tax=Desu... 105 2e-21 UniRef50_Q4L2Y4 Replication protein Rep n=48 Tax=Staphylococcus ... 105 2e-21 UniRef50_B5ZM92 Initiator RepB protein n=1 Tax=Gluconacetobacter... 104 2e-21 UniRef50_Q8GI69 Replication protein n=4 Tax=Alphaproteobacteria ... 104 2e-21 UniRef50_C9N206 Putative replication protein rep n=1 Tax=Leptotr... 104 3e-21 UniRef50_UPI0001BCE2AC putative RepE n=1 Tax=Campylobacter fetus... 104 3e-21 UniRef50_C5VLR9 Initiator RepB protein n=3 Tax=Prevotella RepID=... 103 5e-21 UniRef50_A1VV49 Initiator RepB protein n=1 Tax=Polaromonas napht... 103 5e-21 UniRef50_B0S461 Replication protein n=1 Tax=Finegoldia magna ATC... 102 1e-20 UniRef50_Q58AT2 Replication protein n=2 Tax=Cupriavidus metallid... 102 1e-20 UniRef50_Q9ZN83 Replication protein n=2 Tax=Lactobacillales RepI... 102 1e-20 UniRef50_D1TDA5 Putative uncharacterized protein n=1 Tax=Burkhol... 101 3e-20 UniRef50_D2QVZ6 Initiator RepB protein n=1 Tax=Spirosoma lingual... 100 5e-20 UniRef50_B9ECE7 Plasmid replication initiation protein n=1 Tax=M... 100 5e-20 UniRef50_Q5CZF6 Putative replication protein n=8 Tax=Bacteroides... 100 6e-20 UniRef50_D0I2R4 Replication protein n=1 Tax=Grimontia hollisae C... 100 6e-20 UniRef50_Q11ZC6 Initiator RepB protein n=1 Tax=Polaromonas sp. J... 100 6e-20 UniRef50_B2TSF7 Replication initation protein Pi n=2 Tax=Enterob... 100 9e-20 UniRef50_B1Z6C2 Putative uncharacterized protein n=3 Tax=Burkhol... 99 1e-19 UniRef50_Q1CR19 Replication initiation protein A n=18 Tax=Helico... 99 2e-19 UniRef50_Q5I3A2 Replication protein (Fragment) n=1 Tax=Vibrio ch... 99 2e-19 UniRef50_B3E5E7 Initiator RepB protein n=1 Tax=Geobacter lovleyi... 99 2e-19 UniRef50_Q46MZ9 Putative uncharacterized protein n=4 Tax=Burkhol... 98 2e-19 UniRef50_B1BQZ4 Initiator RepB protein n=1 Tax=Clostridium perfr... 98 2e-19 UniRef50_A1VWT1 Initiator RepB protein n=1 Tax=Polaromonas napht... 98 3e-19 UniRef50_A9KCY2 Putative uncharacterized protein n=1 Tax=Coxiell... 98 3e-19 UniRef50_A4JTT6 Putative uncharacterized protein n=1 Tax=Burkhol... 98 3e-19 UniRef50_Q93PC9 MS100, putative replicase RepA n=1 Tax=Microscil... 98 3e-19 UniRef50_Q9RHE5 RepA n=1 Tax=Erysipelothrix rhusiopathiae RepID=... 98 4e-19 UniRef50_Q1PHH9 PCZ1.1 n=3 Tax=Bacillales RepID=Q1PHH9_9BACL 97 4e-19 UniRef50_C3Q8A6 RepA n=20 Tax=Bacteroides RepID=C3Q8A6_9BACE 97 5e-19 UniRef50_Q9EZ86 Replication protein B n=7 Tax=Campylobacter RepI... 97 5e-19 UniRef50_C9L0X5 Initiator RepB protein n=4 Tax=Bacteroides RepID... 96 1e-18 UniRef50_Q02VJ2 Replication initiator protein n=1 Tax=Lactococcu... 95 2e-18 UniRef50_A0L312 Initiator RepB protein n=1 Tax=Shewanella sp. AN... 95 2e-18 UniRef50_Q21QA3 Putative uncharacterized protein n=2 Tax=Comamon... 95 2e-18 UniRef50_UPI0001BCA79F replication-like protein n=1 Tax=Fusobact... 95 2e-18 UniRef50_UPI0001BCE2A8 replication protein B n=1 Tax=Campylobact... 95 2e-18 UniRef50_UPI0001979AA2 putative pNL871104_p1 n=1 Tax=Helicobacte... 95 2e-18 UniRef50_Q03N27 Plasmid replication initiation protein n=22 Tax=... 95 3e-18 UniRef50_Q7WWW9 Putative replication protein n=1 Tax=Ralstonia e... 95 3e-18 UniRef50_P03067 PI protein n=4 Tax=root RepID=PIR_ECOLX 94 3e-18 UniRef50_A2A225 Putative DNA Initiator replication protein RepB ... 94 4e-18 UniRef50_C8KXR0 Replication protein n=1 Tax=Actinobacillus minor... 94 5e-18 UniRef50_D0Z5I8 Putative uncharacterized protein n=1 Tax=Photoba... 93 6e-18 UniRef50_UPI0001B43BA0 replication protein n=1 Tax=Listeria mono... 92 1e-17 UniRef50_C9KLS3 Initiator RepB protein n=1 Tax=Mitsuokella multa... 92 1e-17 UniRef50_C3XLI9 Replication protein n=1 Tax=Helicobacter wingham... 92 2e-17 UniRef50_D0QMK6 Pi protein n=1 Tax=Escherichia coli RepID=D0QMK6... 92 2e-17 UniRef50_A7HZC8 Putative RepE n=2 Tax=Campylobacter RepID=A7HZC8... 92 2e-17 UniRef50_C8WG51 Initiator RepB protein n=1 Tax=Zymomonas mobilis... 92 2e-17 UniRef50_D2U4L0 Pi protein (Replication initiation protein) n=1 ... 91 3e-17 UniRef50_O87353 Replication protein Rep n=2 Tax=Staphylococcus R... 91 3e-17 UniRef50_B9ECF4 Plasmid replication initiation protein n=1 Tax=M... 91 3e-17 UniRef50_C6S581 Putative initiator RepB protein n=1 Tax=Neisseri... 91 4e-17 UniRef50_A2SMS0 Putative uncharacterized protein n=1 Tax=Methyli... 90 6e-17 UniRef50_C9CGX5 Plasmid replication protein n=5 Tax=Enterococcus... 90 6e-17 UniRef50_A8UD54 Replication protein n=1 Tax=Carnobacterium sp. A... 89 2e-16 UniRef50_A1VWH2 Initiator RepB protein n=1 Tax=Polaromonas napht... 88 2e-16 UniRef50_C5NND2 RepB initiator protein n=1 Tax=Photobacterium da... 88 2e-16 UniRef50_O85801 Replication protein A n=8 Tax=Helicobacter pylor... 87 7e-16 UniRef50_D1XZR3 Initiator RepB protein n=2 Tax=Prevotella RepID=... 86 1e-15 UniRef50_D0R6F1 Replication initiation protein n=1 Tax=Lactobaci... 85 2e-15 UniRef50_C3X132 Putative uncharacterized protein n=1 Tax=Fusobac... 85 2e-15 UniRef50_Q1WRF7 Replication protein n=2 Tax=Lactobacillus saliva... 84 4e-15 UniRef50_B2JXX7 Putative uncharacterized protein n=1 Tax=Burkhol... 83 6e-15 UniRef50_B9D168 Putative RepE replication protein n=1 Tax=Campyl... 82 2e-14 UniRef50_D1ARP8 Initiator RepB protein n=2 Tax=Fusobacteriaceae ... 81 4e-14 UniRef50_A1X019 RepE replication protein, putative n=1 Tax=Campy... 80 5e-14 UniRef50_Q46019 RepB protein n=1 Tax=Campylobacter coli RepID=Q4... 80 7e-14 UniRef50_D1AFD6 Putative uncharacterized protein n=1 Tax=Sebalde... 78 3e-13 UniRef50_A6DEU9 Putative uncharacterized protein n=1 Tax=Caminib... 77 7e-13 UniRef50_D1AQA4 Putative uncharacterized protein n=1 Tax=Sebalde... 77 8e-13 UniRef50_UPI0001742AD8 putative RepE n=1 Tax=candidate division ... 76 9e-13 UniRef50_D0GP72 Initiator RepB protein n=2 Tax=Leptotrichia good... 75 2e-12 UniRef50_Q4A151 Putative replication protein RepA n=1 Tax=Staphy... 74 3e-12 UniRef50_D1AQC9 Initiator RepB protein n=1 Tax=Sebaldella termit... 74 4e-12 UniRef50_P72243 ORF1 n=1 Tax=Prevotella ruminicola RepID=P72243_... 73 9e-12 UniRef50_Q4VGL8 Putative Rep n=1 Tax=Campylobacter coli RepID=Q4... 73 1e-11 Sequences not found previously or not previously below threshold: >UniRef50_Q46146 RepA n=3 Tax=root RepID=Q46146_9GAMM Length = 289 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 116/237 (48%), Gaps = 5/237 (2%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N P++ +SN L EA+Y L+ ++R++ + Q+R+ + + + VA YA + G Sbjct: 2 NEPQVYKSNALVEASYRLTPAEQRIMLGCITQVRRDQ--PLTDEVMYSVSVADYAALVGT 59 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 S K++ A +EV G W A+ S G + Sbjct: 60 DSHSTYKELADAALRLKRREVWLREYPNGQGKRPKTLVTSWVQSIAYVESEGRVELRFTK 119 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++P+ L +FT++ L + ++T+ +AMRLYE LCQ+R G+G + + W+ E +Q Sbjct: 120 DMLPYLTQLTEQFTRYALEDVAKMTSGHAMRLYELLCQWR---GAGEREVPVAWLREAFQ 176 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 L Y + D +R ++ +IN +P+ + + ++K G + +H+VF+F + T Sbjct: 177 LDGKYPAIKDLKRWVIEPATAQINEHSPLWVKWDQRKTGDRVSHLVFTFGEKAQKGT 233 >UniRef50_P62538 Replication initiation protein n=30 Tax=root RepID=REPE2_ECOLX Length = 251 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 236/249 (94%), Positives = 243/249 (97%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 MAE AVINHKKRKNSPRIVQSN+LTEAAYSLSRDQKR+LYLFV QIRKSDG+LQEHDGIC Sbjct: 1 MAEIAVINHKKRKNSPRIVQSNELTEAAYSLSRDQKRLLYLFVHQIRKSDGSLQEHDGIC 60 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 EIHVAKYAE FGLTSAEASKDIRQALK FAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH Sbjct: 61 EIHVAKYAETFGLTSAEASKDIRQALKGFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG+ Sbjct: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGV 180 Query: 181 VSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 VSLKIDWI+ERYQLPQSYQRMPDFRRRFL+ V+EINSRTPMRLSYIEKKKGRQTTHIVF Sbjct: 181 VSLKIDWIMERYQLPQSYQRMPDFRRRFLKASVDEINSRTPMRLSYIEKKKGRQTTHIVF 240 Query: 241 SFRDITSMT 249 SFRDITSMT Sbjct: 241 SFRDITSMT 249 >UniRef50_Q2LA81 Replication initiator-like protein n=1 Tax=Laribacter hongkongensis RepID=Q2LA81_9NEIS Length = 255 Score = 213 bits (543), Expect = 4e-54, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 108/247 (43%), Gaps = 7/247 (2%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 + H+ +I S+ LT AA L+ +KR++ V ++ G + Sbjct: 8 KQQVRPAHELPTGKLQITMSHALTTAAQGLTLAEKRVMMYAVAKLDSFKADGGTPSGAVK 67 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 + YAE FG+ A +RQA K + + F+ P + +E W +S Sbjct: 68 LVAHDYAEQFGVDPDTAYTQLRQAGKGIFNRYIRFFEPGKKGPEE---VMVRWVSSARYS 124 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 P G ++ P + P + L+N+FT+++L++ + + Y+ RL E L QY+ +G Sbjct: 125 PGTGTVTLRFTPEIAPHLLQLKNQFTKYKLAQASALRSIYSWRLLELLSQYQ---STGWR 181 Query: 182 SLKIDWIIERYQLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 +++D + P Y+ D RR ++ V E+ + + + K GR+ T + F Sbjct: 182 QIELDEFHHAMETPAGYKANFKDCRRWVIEPAVKELREKDGWLIDWTPIKSGRKVTALHF 241 Query: 241 SFRDITS 247 F+ Sbjct: 242 EFKREPQ 248 >UniRef50_C5SD11 Initiator RepB protein n=2 Tax=Allochromatium vinosum DSM 180 RepID=C5SD11_CHRVI Length = 285 Score = 199 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 55/236 (23%), Positives = 109/236 (46%), Gaps = 6/236 (2%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + ++N L EA Y L+ ++R+L L + ++ + I A+ +F Sbjct: 2 SSRQLTVTKANSLVEATYHLTLAEQRLLLLVISRLDSRVE--LDSRIPHTITAAEVMTVF 59 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 + + A + + +A + + V + P+ W + P G + Sbjct: 60 QVGESRAYQILEEAAERLYTRSVTIHEPDPRQPKSDRLV-TRWVAAVNYKPGTGAIELFF 118 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 ++PF L+ RF Q+ L+ +++ YA+RLYE L Q+R G +++DW+ ER Sbjct: 119 AQPIMPFISQLKARFCQYHLANIVPMSSVYAVRLYELLIQWRDA---GTRRVELDWLRER 175 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + L Q Y + DF+R LQ+ +++IN+ + + + + + K+GR + F+F Sbjct: 176 FLLGQKYASIRDFKRYVLQIAIDQINTHSDLWVKWEQHKRGRVVHALTFTFGPKAE 231 >UniRef50_P95424 Replication initiator protein n=3 Tax=Pseudomonas RepID=P95424_PSEAC Length = 237 Score = 196 bits (499), Expect = 5e-49, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 100/234 (42%), Gaps = 11/234 (4%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 ++ QSN L EA+++L+ ++KR++ I + DG I +A++FGL Sbjct: 6 DNKVTQSNRLVEASHTLTLNEKRLVLCAASLIDPRKPLPK--DGYLTIRADAFADVFGLD 63 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A + + A ++ K E W + +G + +P Sbjct: 64 VRHAYEALDDAASRLFRADIR------RYSKGKIVERMRWVFHVKYREGQGCVELGFSPT 117 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 ++P L FT ++L + +++ YA+RLYE + Q+ K +D + + L Sbjct: 118 VLPHLTMLNREFTSYQLKQIGSLSSFYAVRLYELMSQFLKLGQ---RECTLDQLRQMLDL 174 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 YQ + + R R L + E+N+ T + ++ +++GR+ F+ + Sbjct: 175 GDKYQDVKNLRVRVLDPALKELNAGTDLAVTAEPRRQGRKIVGFSFTITKNDQL 228 >UniRef50_A3MAB7 DNA replication protein n=29 Tax=cellular organisms RepID=A3MAB7_ACIBT Length = 316 Score = 194 bits (493), Expect = 3e-48, Method: Composition-based stats. Identities = 52/238 (21%), Positives = 112/238 (47%), Gaps = 6/238 (2%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 +V+ N L A+Y+L ++R++ L + + R+S + +D E+H Y FG+ Sbjct: 2 RDLVVKDNALINASYNLDLVEQRLILLAIVEARESGKGINANDP-LEVHADSYINQFGVH 60 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A + ++ A K ++ + + + W + A++ + + P Sbjct: 61 RNTAYQALKDACKDLFARQFSYQEKKANGNIRN--VMSRWVSQIAYNDNEATVDLIFAPA 118 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ- 193 ++PF L+ +FT++ L + +++ YA+RLYE L Q+R + ++++ ++ Sbjct: 119 VVPFITRLEEQFTKYELQQVSSLSSAYAIRLYELLIQWRSTGKTP--TIELQEFRKKLGV 176 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 L Y RM + R L++ + +IN T + + Y + K+GR + F+F+ + Sbjct: 177 LDNEYLRMAHLKERVLELSIKQINEHTDITVKYEQHKRGRSISGFSFTFKQKKKDSPS 234 >UniRef50_C8Q373 Initiator RepB protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q373_9ENTR Length = 248 Score = 189 bits (481), Expect = 6e-47, Method: Composition-based stats. Identities = 123/230 (53%), Positives = 165/230 (71%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 S I QSN++TEAAY L+RDQKR+L+L V +IR + + G+CE VA+YA+++ L Sbjct: 18 SKIIAQSNEMTEAAYHLTRDQKRILFLAVGRIRNATKGGDKSAGLCEFTVAEYADMYNLP 77 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 S EASKDIR AL FA KEV +RPEED G+EKG E +PW IK+A+SP RG Y VH+NPY Sbjct: 78 STEASKDIRNALAGFAAKEVCIFRPEEDEGNEKGSEVYPWMIKKAYSPRRGTYIVHLNPY 137 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 L+PFF L+ RFT+ ++ + ITNPYA+RLYESLCQY+ +GSG L ++W+IERY L Sbjct: 138 LMPFFTSLEKRFTKIKIKDVAGITNPYAIRLYESLCQYKNAEGSGFAVLGVEWMIERYGL 197 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 P+SY +M +F+R FL V EI +T M ++Y EKK G + TH F+++ Sbjct: 198 PKSYLKMAEFKRGFLVKAVKEIKEKTHMTITYSEKKSGNRITHFQFTYQQ 247 >UniRef50_Q6XUP4 RepA n=4 Tax=Pseudomonas RepID=Q6XUP4_9PSED Length = 288 Score = 189 bits (480), Expect = 7e-47, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 109/231 (47%), Gaps = 14/231 (6%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 + +SN L A+Y L+ +++R++ + ++ + + Y++I+G+ Sbjct: 17 VTKSNTLITASYRLTLNEQRLILAAISKLDPR----RPMPKKVSVSAVDYSDIYGVQLRH 72 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A + ++ A +++ + D G E W + + G + +++P Sbjct: 73 AYEQMKVAADELYERDIKTF-------DGSGMERKRWVDRAKYLDGEGRVELSFTIHVMP 125 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 + L ++ T + L + + ++ RL+E L Q+RK +G ++++ + L + Sbjct: 126 YLTMLYSKVTSYDLRRVACLDSSHSFRLFEMLMQFRK---TGWAYIEVEALRVALGLSDA 182 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 YQR + R+R + V E+ +++ + +SY +++GR+ I F+F D+ + Sbjct: 183 YQRFNNLRQRVIDPAVEELKTKSNLDVSYELRREGRKVIAIKFTFCDLAQL 233 >UniRef50_Q6J2B8 Replication protein n=2 Tax=Gammaproteobacteria RepID=Q6J2B8_PSEYM Length = 284 Score = 189 bits (480), Expect = 8e-47, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 98/251 (39%), Gaps = 7/251 (2%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 +E + ++ I N LT + L+ +KR++ + ++ Sbjct: 33 SENYDASIERVPGERWITMGNALTRSGQGLTLAEKRVVGCALSKMDSRKAVPIGTIPTTR 92 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFY---RPEEDAGDEKGYESFPWFIKR 118 I+ +YAE FG+ A ++ A + + FY + W + Sbjct: 93 INATEYAEAFGIDLDTAYNQLQSAANQLYKRSITFYQAASSRQGKPLPPTRVQMRWVGRV 152 Query: 119 AHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 + G ++ P L+P GL+ +FT ++L + + + Y+ RL E L +++ + Sbjct: 153 HYQKGEGWVELYWWPELLPQLTGLRKKFTSYQLQQASALRSIYSWRLLELLTRFQD---T 209 Query: 179 GIVSLKIDWIIERYQLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 G + + I+ + + RRR ++ V E+ + + + KKGR+ Sbjct: 210 GWLEITIEDFAQSMDATEKQMANFAAIRRRIIEPAVKELTEKDGWLIDWRAIKKGRKVAM 269 Query: 238 IVFSFRDITSM 248 + F F+ + Sbjct: 270 LRFDFKKNNQL 280 >UniRef50_D0SRM6 Replicase n=2 Tax=Acinetobacter RepID=D0SRM6_ACIJU Length = 334 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 103/233 (44%), Gaps = 6/233 (2%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 +V+ N L A+Y+L ++R++ L + + R++ + +D IH + Y + F + Sbjct: 2 LVVKDNALINASYNLELVEQRLILLAIIEARETGKGINANDA-LTIHASSYIQNFNVQKH 60 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 A ++ A + ++ + ++ W + + G + P ++ Sbjct: 61 TAYGALKDACRDLFSRQFSYQELSPKGN--VINQTSRWVSQIGYIQEEGSVQLIFAPAVV 118 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP- 195 P L+ +FT + L + + + YA RLYE L +R + + + ++ + + L Sbjct: 119 PLITQLEQQFTSYDLEQVSTLKSKYATRLYEILISWRSVGKTPM--IGLEELRGKLGLGV 176 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 Y+ + +F+ R L++ + +IN T + + Y + KKGR F F+ Sbjct: 177 NDYKLLANFKLRVLELALEQINEHTDIFVKYEQHKKGRSIIGFSFKFKQKQQS 229 >UniRef50_C8PWL8 DNA replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PWL8_9GAMM Length = 310 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 107/239 (44%), Gaps = 9/239 (3%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 IV+ N L A+YSL ++R++ L + + R++ H+ + Y F + Sbjct: 2 KKELIVKDNALINASYSLELTEQRIILLAILKARENKT---PHNQELIVTAQSYITAFNV 58 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A K ++ A + ++ + R + E W ++ + + Sbjct: 59 HRNTAYKTLKTACDNLFTRQFTYQRYNSNGNVE--VVKTRWVQSVIYAENESYIKIKFTD 116 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++P L+ FT + L + + + +++RLYE L QYR G + + +D + + Sbjct: 117 EILPLVTMLEKHFTSYELQQVSSLKSVHSIRLYELLIQYRTV---GKIEISLDDLRLKLG 173 Query: 194 LPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 + +S Y RM +F+ R L V + +IN + + + Y + K GRQ T +F+F+ S T Sbjct: 174 INESEYPRMDNFKNRVLDVGIQQINEHSDITVKYNQVKTGRQITGFIFTFKQKPSKATA 232 >UniRef50_D0WD49 Initiator RepB protein n=3 Tax=Neisseria RepID=D0WD49_NEILA Length = 369 Score = 187 bits (475), Expect = 3e-46, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 7/229 (3%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 +V+ N L A+Y+L ++R++ L + + R + + +D I + Y F Sbjct: 4 KNLVVKDNALINASYNLELVEQRLILLSIIEARTTGKGITANDR-LTITASSYMNNFHTN 62 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A K ++ A + ++ F E + W + A+ + + P Sbjct: 63 RNTAYKALKDACNNLFERQFSFI---EKTPKGEKVVRTRWVSQVAYIEQQATVELVFAPN 119 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 + P L+ FT + L + +++ YA+RLYE + +R + + + ER + Sbjct: 120 VAPLITMLEKNFTSYELDQVSSLSSKYAVRLYEIIISWRAAGKTPM--FSTMELRERLGV 177 Query: 195 -PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 P YQ+M F+R+ L V +IN +T + ++Y + K+GR+ FS Sbjct: 178 MPDEYQKMELFKRKVLDFAVKQINDKTDISITYEQHKEGRKIVGFTFSI 226 >UniRef50_C5SDE1 Initiator RepB protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SDE1_CHRVI Length = 281 Score = 187 bits (474), Expect = 4e-46, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 6/238 (2%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKS-DGTLQEHDGICEIHVAKYAEI 70 + + +SN L EA YSLS + R+L + QI D +H + A++ Sbjct: 3 KLKPIYVTKSNSLVEACYSLSLAELRILLATIAQIDSRPGAAPISSDTPFPLHASDLAKL 62 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 F + S +A + +R ++V+ ++ Y W + G ++ Sbjct: 63 FRVPSKQAYELLRDGASRLYERDVIIDAATTAHPNK--YTKSRWVSAITYVEDEGYVDLY 120 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 P ++PF L + FT++++ +++ YA+RLYE L Q+ K G L ID I Sbjct: 121 FAPKVLPFLTNLASEFTRYQIKHVAPMSSVYAIRLYELLKQWVKI---GERQLSIDEIKT 177 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 + +Y + + +R + V +IN + ++++ ++K+GR T ++F Sbjct: 178 MLMIDNAYSSVTELKRWVVTPAVQQINKHSDLKVTMEQRKRGRTITALIFKIEAKREA 235 >UniRef50_C9S245 Initiator RepB protein n=7 Tax=Geobacillus RepID=C9S245_GEOSY Length = 383 Score = 186 bits (472), Expect = 7e-46, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 106/228 (46%), Gaps = 14/228 (6%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + + +SN L EA Y LS +++++ + QIRK D + + ++ + +++E+ G Sbjct: 11 NSAVTKSNALIEANYKLSTIEQKIILYIISQIRKDDADFK----MYKLPIQEFSELLGYR 66 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 + ++R+ K+ K + + + + W + G S+ +P Sbjct: 67 GSPKYTELREITKNLMRKVLEIR-------EGQKLKQLSWVSYVEYDEHSGYVSLAFDPR 119 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 L P+ + L+ FT +RL E+ + Y++R+YE L +++ G V +++D + Sbjct: 120 LKPYLLQLKREFTTYRLKNVMELKSSYSIRMYELLKRWQ---YMGEVVIRLDDLRMMVGA 176 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 Y +F++R L EI+ +T + +Y E ++ R+ I F Sbjct: 177 GDKYSEYHNFKKRVLNPAKKEISEKTDIMFTYEEIREKRKVAAIRFQI 224 >UniRef50_B2UKE3 Initiator RepB protein n=2 Tax=Ralstonia pickettii RepID=B2UKE3_RALPJ Length = 251 Score = 183 bits (464), Expect = 6e-45, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 93/236 (39%), Gaps = 9/236 (3%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSD--GTLQEHDGICEIHVAKYAEIFG 72 + SN LT AA+SL+ +KR++ + + +E + A+YAE FG Sbjct: 18 ERNVTMSNALTRAAHSLTLAEKRLIAACIAKNDSIPFVELRREGAWRVRLSAAEYAEAFG 77 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + A + ++ A S + V R +E F W + G + Sbjct: 78 VDANTAYEQLQGASDSLFNRYVRTVRETRRGPEE---FKFRWVGSAKYHKGEGWIELVWF 134 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 ++P GL+ FT ++L + + + YA RL+E + I+ Sbjct: 135 QEVVPHLFGLRQEFTTYKLRQAAALRSVYAWRLFECFKSWAATGRYTP---TIEEFHRAM 191 Query: 193 QLPQSY-QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 +S + D RRR ++ V E+ + + + + + GR+ + F FR Sbjct: 192 DASESQRKNFKDLRRRVIEPAVKELREKNGLHIEWEPETAGRKVVKLDFRFRVSPQ 247 >UniRef50_C0VLN3 Replication protein n=6 Tax=Acinetobacter RepID=C0VLN3_9GAMM Length = 309 Score = 181 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 119/237 (50%), Gaps = 13/237 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N +V+SN + EA+Y LS ++R++ + +I K+ D + + V + ++ G+ Sbjct: 18 NKNHVVKSNQVIEASYQLSAVEQRIVLAAISRIPKNQ--PITDDELYPVSVDELKQL-GV 74 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A +D+++ + + + ++ W + S+ + + + Sbjct: 75 HEKTAYRDLKEGINRLYERSINLSIDDKS-------IKMRWVQEIQFLDSQSVIGIRFSK 127 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++PF L FT++ LS+ I + Y +R+YE L QYR+ G + ++ + + Sbjct: 128 PILPFISNLSREFTKYALSDIAGINSGYGIRIYELLVQYRQI---GKREISVESLRTMLE 184 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 L + Y DF++R + +++IN +P++++Y +KK GR+ THI+FSF++ + T Sbjct: 185 LGKKYPLFADFKKRVIDTAIDQINEYSPLKVTYEQKKTGRKVTHIIFSFKEKSKSIT 241 >UniRef50_C6RK77 DNA replication protein n=2 Tax=Acinetobacter radioresistens RepID=C6RK77_ACIRA Length = 313 Score = 179 bits (454), Expect = 8e-44, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 110/235 (46%), Gaps = 6/235 (2%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 +V+ N L A+Y+L ++R++ L + + R+S + +D + +H Y F + Sbjct: 2 RELVVKDNALINASYNLDLVEQRLILLAIVEARESGKGINANDPLV-VHAESYINQFNVH 60 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A + ++ A ++ + + + E + W + + + + + P Sbjct: 61 RNTAYQALKDACHDLFVRQFSYQKVNDRGNVE--HYRSRWVSEIGYVDNEAIVKLIFAPA 118 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 ++P L+ +FT++ L + ++T+ YA+RLYE L +R + + +++ +R + Sbjct: 119 IVPLITRLEEQFTKYELQQVSQLTSAYAVRLYELLIAWRSTGKTPV--IELADFRKRIGI 176 Query: 195 -PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 Y+RM F+ L++ +N+IN T + ++Y + KKGR F+F Sbjct: 177 LETEYKRMERFKTSVLELAINQINEHTDINVAYEQHKKGRSIVGFSFNFSQKEKK 231 >UniRef50_B0VVG2 Replication protein n=4 Tax=Acinetobacter RepID=B0VVG2_ACIBS Length = 303 Score = 179 bits (454), Expect = 9e-44, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 112/241 (46%), Gaps = 13/241 (5%) Query: 7 INHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAK 66 I +V+SN + EA+Y LS ++R++ + +I +++ D I + + Sbjct: 3 IKMMSPSKKELVVKSNQVIEASYQLSSTEQRIVLAAISKISRAED--ITDDEIYRVTIDD 60 Query: 67 YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 ++ G+ A +D++ + + + +E W S+ + Sbjct: 61 LKKL-GVHEKTAYRDLKDGVNRLYDRSINLAINDES-------IKMRWIQSIRFLESKSV 112 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID 186 + + ++PF L FT++ LS+ +++ YA+R+YE L QYR G + I+ Sbjct: 113 VGIRFSKEILPFISNLSREFTKYSLSDIAGMSSAYAIRIYELLSQYRSI---GKREIPIE 169 Query: 187 WIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 + +L + Y D +R + V++IN +P+ +SY + K GR+ THI F+F++ + Sbjct: 170 SLRSMLELGKRYPLSADLKRWVIDTAVDQINEHSPLNVSYQQIKTGRKVTHIQFTFKEKS 229 Query: 247 S 247 Sbjct: 230 K 230 >UniRef50_B3AF43 Plasmid replication protein n=4 Tax=Enterobacteriaceae RepID=B3AF43_ECO57 Length = 334 Score = 177 bits (449), Expect = 3e-43, Method: Composition-based stats. Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 13/258 (5%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 MA + + Q N L E AY ++ + R+LYL + +I D + Sbjct: 1 MALRNNKRNDCNDVQSLLTQGNQLLEGAYDITLIEMRLLYLALTKI---DSRKPQPASEY 57 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 + +Y + F L S + ++ A S K +V Y E + F WF + Sbjct: 58 TLFAKEYRDAFSLDSKNCYEQLKSAASSLGSKPIVTYEWNETKKRIDAVKRF-WFSSIRY 116 Query: 121 SPSRGL--YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 ++ + + + L++ FTQ L ++ P++ RLY L +Y+ + Sbjct: 117 GVGNSESDITLRFSDSVSQYLYELKSEFTQMNLEHMVKLDTPFSFRLYSWLYKYKNLSRN 176 Query: 179 GIVS-------LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 S + I+W+ ER L Y DF++R L V+ IN+ T + ++Y K Sbjct: 177 KKESGVISTDPITIEWMKERTGLTGKYPVYKDFKKRVLDPAVDIINANTNLSVTYEGIKS 236 Query: 232 GRQTTHIVFSFRDITSMT 249 G++ +VF++ T Sbjct: 237 GKRIESVVFTYLVENETT 254 >UniRef50_UPI00004A2E95 putative replication initiator protein n=3 Tax=cellular organisms RepID=UPI00004A2E95 Length = 392 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 101/235 (42%), Gaps = 6/235 (2%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N +V+ N L A+Y+L ++R++ L V + R+++ ++ D I Y FG+ Sbjct: 2 NKNLVVKDNALINASYNLELVEQRLILLAVVEARRTNQEIKSDD-FLTICAENYINEFGV 60 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A + ++ A + + + E + W ++ + + + + Sbjct: 61 HRNVAYQALKDACSHLFERRFTYQKLTPKGNKET--ITSRWVQSVSYVENEAIVRLKFSD 118 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 + P L+ FT + L + +T+ YA+RLYE + +R + + + D + R Sbjct: 119 DVAPLITLLEKNFTSYELEQVAGLTSKYAVRLYEIIIAWRTKGRTPMFDI--DELRNRLG 176 Query: 194 -LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + Y RM +R+ + V ++N +T + ++Y + K GR+ F + Sbjct: 177 VINDEYPRMETLKRKVIDFAVKQVNDKTDIDITYEQHKNGRKIVGFTFVVTQKSK 231 >UniRef50_C6QRE9 Initiator RepB protein n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRE9_9BACI Length = 391 Score = 176 bits (447), Expect = 5e-43, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 90/235 (38%), Gaps = 14/235 (5%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 + +SN L EA Y L +++++ I D Q + ++ E+ G S Sbjct: 14 NLVSKSNSLVEARYKLGTMEQKVIAAIASNISPDDKDFQT----YTFSIKEFKELIGSKS 69 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 +I + + P E W K ++ G +V +P L Sbjct: 70 KNIYHEIDKVMTRLMQ-------PFNFINAEGKPTKIAWLSKATYNVGEGTVTVRFDPDL 122 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 PFF+ L +FT+++L + Y++R+YE L Y G + + + + + Sbjct: 123 KPFFLFLNEKFTRYKLGNIIHLRRSYSIRIYELLKSYE---GLAERTFTLKELRGKLGVE 179 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 Y +FR+R L E+ +T + +Y KKGR + F + T Sbjct: 180 DKYPNWINFRQRVLDPAQEELEEKTDIMFTYEPIKKGRSVEKVKFIIKPNPKNKT 234 >UniRef50_C8PV39 DNA replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV39_9GAMM Length = 341 Score = 176 bits (447), Expect = 6e-43, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 111/240 (46%), Gaps = 6/240 (2%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSD---GTLQEHDGICEIHVAKYA 68 +K +V+SN L EA+YSL+ + R+L + + + D L I +YA Sbjct: 2 KKPQDMVVKSNTLIEASYSLTVQEIRLLDIALADLATYDECEKDLLTMHEFVHIRADEYA 61 Query: 69 EIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 +I+ + A +R+A ++ + + E + + W A+ +GL Sbjct: 62 KIYDVDMKTAYTALREASENLFTRYFTYSVQSEKFPTHQEHRKARWVWNIAYVEGQGLVK 121 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 + P LI L+ F+++ L + +T+ YA RLYE + Q+RK + S+ + + Sbjct: 122 LAFTPDLIKLAGKLKGDFSRYHLKQKAPLTSVYAHRLYEMMMQWRK--SKTVPSVSYNEL 179 Query: 189 IERYQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 R+ + Y+R+ +F+ R L + +IN T + +SY + K+GR+ +F F Sbjct: 180 RHRFDIDDKEYKRIANFKARALDPAIKQINEHTDIIVSYEQYKEGRKVAGFIFKFNFKDK 239 >UniRef50_A7M7E8 RepA n=5 Tax=Enterobacteriaceae RepID=A7M7E8_9ENTR Length = 329 Score = 176 bits (446), Expect = 7e-43, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 12/237 (5%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 +VQ NDL E AY ++ D+ R+L L + QI D + D + ++ Y I+G+ Sbjct: 8 VVQGNDLLEGAYGVTLDEMRLLNLALAQI---DSRKPQPDMLYTLYPRDYQRIYGVNPTS 64 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH--SPSRGLYSVHINPYL 135 + + +R A S K V Y +ED + WF + + + + + Sbjct: 65 SHRQLRDAADSLMKKPVTIY--KEDRNGKVRTVQLSWFSRLEYVSNDDHSAVVLRFGQDV 122 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKP-----DGSGIVSLKIDWIIE 190 P+ L+ FT+ + P+++RLY L + R G+ V+L+I+W+ E Sbjct: 123 APYLFELKESFTKLDFINLARLDTPFSIRLYSWLVKARNLTRYRSHGTIEVTLEIEWMRE 182 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + L YQ DFR++ LQ ++ IN+ T + + + K GR I F++ D ++ Sbjct: 183 KANLQGKYQDYRDFRQKLLQPSLDRINASTDISVIWEPVKIGRSVHAIKFTYVDEST 239 >UniRef50_C6RSQ0 Replicase n=4 Tax=Acinetobacter RepID=C6RSQ0_ACIRA Length = 327 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 122/237 (51%), Gaps = 6/237 (2%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 I + N+L EA+Y+L+ ++R++ + + R+ + L D + IH ++Y + F L Sbjct: 15 NLIYKDNNLIEASYALTLSEQRLILVAIIAAREIEKEL-TSDTLLTIHASEYMKHFNLGR 73 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 A + ++ A + + + + + G Y+S W K + + P + Sbjct: 74 QAAYEALQGACDNLFERRLTYKAIDPVTGKPAVYKS-RWVSKVGYVKEAACAQLIFAPDI 132 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL- 194 + F+ L+ +FT++ L + ++++ YA+RLYE L ++R G + + + + ++ L Sbjct: 133 LQLFVKLEEKFTRYELKQISQLSSVYAIRLYELLIRWR---SKGKLYISMVELRDKLGLL 189 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 Y+ M DF++R L V +++IN T + +SY +KK+GR THI FSF S+ Sbjct: 190 ENEYKTMGDFKKRVLTVAIDQINKLTDIDVSYEQKKEGRTITHIEFSFNQKASLIVS 246 >UniRef50_Q2RYM1 Initiator replication protein RepB n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYM1_SALRD Length = 336 Score = 173 bits (440), Expect = 3e-42, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 106/242 (43%), Gaps = 9/242 (3%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 + + R+V+SN L ++ + ++ + R++ + + Q+ K D +E +++ Sbjct: 1 MARQSLFDDQARVVKSNRLVQSKMNWTKLEHRVVAMLIAQLEKDDKEFEEQ----RVYIK 56 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 A++ G + + +++ +D + Y+ + + G Sbjct: 57 DIADLSGRNGKSLYDQAEEICQKLLDQKIHIRTQTDDG--RRRYKGYNCMSSCEYVEGSG 114 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 N + PF + L+ RFTQ+ L ++++ ++MR+YE L +G + L I Sbjct: 115 YIEAKFNDDMQPFLLQLKRRFTQYNLKCFMQLSSQHSMRIYELLKM---REGIKYLRLGI 171 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 + + E SY+R DF+R L+ E+ +T + +Y +++G+ I F ++ Sbjct: 172 EELREVLSCEHSYERFADFKRWVLERARGELWDKTDIYFNYQVEREGQTPVRINFVIKEN 231 Query: 246 TS 247 S Sbjct: 232 DS 233 >UniRef50_Q6TV38 Putative replication initiator protein n=1 Tax=Bacillus methanolicus RepID=Q6TV38_BACMT Length = 420 Score = 172 bits (437), Expect = 8e-42, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 14/239 (5%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 + K S + +SN L EA Y L +++++ IR +D + + V ++ ++ Sbjct: 16 ETKTSNFVTKSNKLIEANYKLGVVEQKIILCLASNIRPTDSDFKT----YTLPVKEFNKL 71 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 GL + ++R+ K K K W A++ S G + Sbjct: 72 LGLKGSPKYTELRKITKELMQKVFEVRI-------NKKVIQVAWLSYVAYNESEGTIDIR 124 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 +P+L P+ + L+ FT ++L ++ + YA+R+YE L QY K + +D + + Sbjct: 125 FDPFLRPYLLELKKEFTSYKLENVVKLKSSYAIRIYELLKQYEKLQ---ERTFLLDDLRK 181 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 Y +F++R L E+ +T + E K GR+ I F Sbjct: 182 MLGAEDIYPAYGNFKQRVLMPAQKELKKKTDISFEIEEIKVGRRVNKIKFLIFPTKKKN 240 >UniRef50_D0V0D3 RepA n=1 Tax=Moraxella bovis RepID=D0V0D3_MORBO Length = 386 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 9/237 (3%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + IV++NDL A Y L+ +++R++ + +I + EI ++++ F + Sbjct: 2 SKDLIVKANDLVVAGYELTANEQRLILTAIAKISPTQLDPNTG---YEITAKEFSKRFNI 58 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESF---PWFIKRAHSPSRGLYSVH 130 A +++R+A + +V E+ P+F + Sbjct: 59 HPKTAYRELREAASRLYERSIVIKTKEQTLKARWADMIILDNPYFEDVMKDEDWKRVVIW 118 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 +P +IPF I L FT+++LSE E ++ Y+ R+YE + Q++ +G + + I + E Sbjct: 119 FSPQVIPFLINLTENFTKYKLSEIAEFSSSYSFRIYEFMMQFQ---STGYIKISIKDLRE 175 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 R QL Y D + ++ V EIN ++P ++ Y K G++ TH+ F+ Sbjct: 176 RLQLGDKYPASKDLKLWVIETAVKEINEKSPYKVDYNLIKTGKKFTHLELRFKQKEK 232 >UniRef50_B1FHX4 Initiator RepB protein n=2 Tax=Burkholderia ambifaria RepID=B1FHX4_9BURK Length = 283 Score = 171 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 22/245 (8%) Query: 18 IVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI----CEIHVAKYAEIFGL 73 + S L A L+ ++KR++ + I G + ++A + L Sbjct: 42 VAMSRALVNAQQGLTLNEKRVMMAALRCIDSKKSPYLHSKGNGYVSVRVRADEFAALAAL 101 Query: 74 TSAE-------ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 A + +++ S +++ + D W K + G Sbjct: 102 APRSGEKQATAAYEGLKEGCASLQKRQLTY-------MDGPRKVVLNWVWKAIYHEREGW 154 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID 186 + +P L P LQ RF ++L + + + Y+ RL E L + R + + ++ Sbjct: 155 AEISFSPDLTPHIFMLQRRFVSYQLEFARGLQSLYSWRLLELLMRERDRGR---LLITLE 211 Query: 187 WIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 ++P +Y R D +RR ++ VNE+N++ + +S+ K GR + F F Sbjct: 212 DFRSVLEIPSTY-RFADIKRRVIETAVNELNAKADLVVSWTPVKLGRAVNSLDFQFVQNP 270 Query: 247 SMTTG 251 Sbjct: 271 QSRLA 275 >UniRef50_C4GNB8 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GNB8_9NEIS Length = 337 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 101/238 (42%), Gaps = 11/238 (4%) Query: 9 HKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYA 68 + +V+SN+L A+Y+++ +++R+L + QI T ++ + + V + Sbjct: 2 KPADLKNNLVVKSNELITASYAMTVNEQRLLLACIGQIDSR--TTLDNGAVFRLSVEQAR 59 Query: 69 EIFGLT--SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 ++F A +D++ A + ++V PE+ + P G Sbjct: 60 DLFYTKGDQRHAYRDMQDACERLFERKVRIALPEKQE------LLTRFVQSIVFDPENGT 113 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID 186 + ++P+ L+ FT++RLS ++T+ +A+R+YE + + G ++ID Sbjct: 114 ADLRFAYEILPYLSQLEANFTKYRLSNIVQLTSSHAVRIYELIVSW-ATQGQYYKEIEID 172 Query: 187 WIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 E L + Y++ + + R + +IN T L +K R I F Sbjct: 173 AFRELLGLGEKYKQNSELKARVTIPAMQQINESTDFELDISFRKSKRTFKWIQLRFNQ 230 >UniRef50_A0R878 Initiator RepB protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R878_PELPD Length = 274 Score = 170 bits (430), Expect = 5e-41, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 15/241 (6%) Query: 8 NHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY 67 + + S +V +N L +A SLS +KR+++ ++ + G +H ++Y Sbjct: 44 SITRGLQSKNVVVANTLVRSAQSLSLAEKRIVFAAAAKMGNN-------FGEVILHASEY 96 Query: 68 AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLY 127 AE F + +A + ++ A++ + P+ + W K + + Sbjct: 97 AETFDMPVKQAYEQLKNAVEGMRTRYFTLAVPDREG---VMIWKINWLQKIGYDDGKARV 153 Query: 128 SVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW 187 + ++P+ L FT+++L + + + ++ RL E Q SG +++KI+ Sbjct: 154 GLRFCEDVLPYLCDLTKEFTKYKLKQACALRSVHSWRLLELFEQ----QSSGWLAIKIED 209 Query: 188 IIERYQLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 + S + +R+ ++ + E+ + + + K GR+ + F+F+ Sbjct: 210 FHHAMESNDSCRNNFAQLKRKIIEPAIKELREKDNWLIDFSFTKAGRKVDLLKFTFKKNP 269 Query: 247 S 247 Sbjct: 270 Q 270 >UniRef50_D2TVA4 Plasmid replication protein n=2 Tax=Enterobacteriaceae RepID=D2TVA4_CITRO Length = 335 Score = 170 bits (430), Expect = 5e-41, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 13/251 (5%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 M N + Q N L E AY ++ + R+LYL + +I D + Sbjct: 1 MVLKNNKNSDCNDVQSLLAQGNQLLEGAYDITLIEMRLLYLALTKI---DSRKPQPANEY 57 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 + +Y + F L S + ++ A S K +V Y E + F WF + Sbjct: 58 TLFAKEYRDTFSLDSKNCYEQLKSAASSLGSKPIVTYEWNEAKKRIDAVKRF-WFSSIRY 116 Query: 121 SPSRGL--YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 ++ + + + L++ FTQ L ++ P++ RLY L +Y+ + + Sbjct: 117 GVGNSESDITLRFSDSVSQYLYELKSEFTQMNLEHMVKLDTPFSFRLYSWLYKYKNLNRN 176 Query: 179 GIVS-------LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 S + I+W+ ER L Y DF++R L V+ IN+ T + ++Y K Sbjct: 177 KKHSGVISTDPITIEWMKERTGLTGKYPVYKDFKKRVLDPAVDIINANTNLSVTYEGIKS 236 Query: 232 GRQTTHIVFSF 242 GR+ +VF++ Sbjct: 237 GRKIESVVFTY 247 >UniRef50_B0VVF3 DNA replication protein n=7 Tax=Acinetobacter RepID=B0VVF3_ACIBS Length = 326 Score = 169 bits (428), Expect = 8e-41, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 114/250 (45%), Gaps = 18/250 (7%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + ++++N L +A+Y+LS ++R++ L + + + D + IH +YA+ F + Sbjct: 3 NDLVIKNNALIDASYTLSLVEQRLIGLALVKANNQHQEI-TSDTVLTIHAGEYAQQFNVD 61 Query: 75 SAEASKDIRQALKSFAGKEVVF--------------YRPEEDAGDEKGYESFPWFIKRAH 120 + A + +++A + + + + GD W K + Sbjct: 62 GSVAYRALKEASERLFLRYFSYTLYGLDFGKEYTLKRPKKLKDGDIPTIMKSRWVQKVGY 121 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + S GL + ++ + FT + LS+T E T+ YA RL+E L +++ Sbjct: 122 TESEGLLHFQLTSDVVRLVANSKEYFTSYYLSQTTEFTSTYATRLFELLMKWKNVGHIPF 181 Query: 181 VSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 ++I+ + + + P+ Y+ + +F+ R L V V ++N + ++ Y + K+GR T Sbjct: 182 --IEIEQLRGQLGVEPKQYKIISNFKLRVLDVAVEQVNQYSDYKIEYEQHKQGRTITGFS 239 Query: 240 FSFRDITSMT 249 F F+ + T Sbjct: 240 FKFQPKATKT 249 >UniRef50_Q0QVX3 PNL18.2_p1 n=2 Tax=Neisseria lactamica RepID=Q0QVX3_NEILA Length = 257 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 113/245 (46%), Gaps = 12/245 (4%) Query: 5 AVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHV 64 V+ K S +V SN +T +A +L+ +KR+L + ++ +G ++ Sbjct: 17 NVVKQSKDLGSRNVVISNYITRSAQTLNLVEKRILMAGIAKLGGVNGE-------IKLTA 69 Query: 65 AKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 +YA+ +G+ A +++ A+ + + + + + G + G + W + Sbjct: 70 QEYADTYGVDIRTAYNELKGAVHTLMKRTLSWQITD---GKKIGTRTTIWVQGYDYFKDE 126 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR-KPDGSGIVSL 183 GL + Y+ PF L+ FT+++L + + + Y+ RL E Q + K DGSG +S+ Sbjct: 127 GLVKFRFSEYVFPFLFELEREFTKYQLQQAAALRSIYSWRLLELFEQMKDKTDGSGWLSM 186 Query: 184 KIDWIIERYQLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 I+ + +SY+ R+R ++ + E+ + + + +K+GR+ ++F F Sbjct: 187 SIEEFWHAMEATESYRANFQLLRKRVIEPAIKELTEKDNWLIEWEARKRGRKVATLLFKF 246 Query: 243 RDITS 247 + Sbjct: 247 QRNPQ 251 >UniRef50_C5S4L5 Replication protein n=3 Tax=Pasteurellaceae RepID=C5S4L5_9PAST Length = 321 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 114/236 (48%), Gaps = 10/236 (4%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 + +V+SND EA+Y ++ D+ R+L L + QI Q H E VA++AE F Sbjct: 2 SKNLIVVKSNDFVEASYKITLDEMRVLLLTIGQINSK---AQNHRRDFEFTVAEFAERFN 58 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 A +++A+ G+ V ++ + ++A+ G + + ++ Sbjct: 59 TDEKSAYAQVQRAVDMLGGRWAVIE------KNKNIERKVTFLTEQAYFKGEGRFQIILH 112 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 L+PF +Q +FT++ L ++ +A+R+YE + QYR ++ + + E Sbjct: 113 EKLMPFLSDIQGKFTEYNLKYIARFSSFHAIRIYEIITQYRNSKEK-ERTVLVSELKEWL 171 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 Q+ Y R +F+ R L+ ++EIN ++ + +S+ + K+GR I F + ++ Sbjct: 172 QVADKYPRWDNFKARVLEPAISEINEKSDLLVSFKQIKQGRSIHAIKFLIKQNKTI 227 >UniRef50_Q1Q7S1 Initiator RepB protein n=3 Tax=Bacteria RepID=Q1Q7S1_PSYCK Length = 315 Score = 167 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 100/228 (43%), Gaps = 5/228 (2%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 N I + N L A+YSL ++R+++L + + R+ + G+ I Y E F Sbjct: 2 SNKQLIAKDNKLIGASYSLGIPEQRLIFLAIIEAREQKQLIDAK-GVLNIRAKSYQEQFK 60 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + ++ A + E G + W K ++ G+ + Sbjct: 61 VEKHTSYDALKSATSGLFDAHFEYEDIHEKTGK-QARHVIRWVQKISYIDDAGMVELQFT 119 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 +IP L ++T++ L + E+ + Y++RLYE + Q++ + + +D + + Sbjct: 120 DAVIPLITRLSEQYTEYELKQVSELQSEYSIRLYELMMQWKAVGKTN--KISVDDLRRKL 177 Query: 193 QL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 + P+ Y++M +F+ R L +N+IN T ++ Y + K GR Sbjct: 178 GVEPKQYKKMNNFKARVLDHAINQINEHTDIQAEYDQYKDGRAIAGFT 225 >UniRef50_A0S0J1 Rep n=2 Tax=Acinetobacter RepID=A0S0J1_9GAMM Length = 307 Score = 166 bits (420), Expect = 8e-40, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 109/233 (46%), Gaps = 8/233 (3%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N+ +V+ N L +A+++LS ++R++ L + R+S D E+ V+ Y F + Sbjct: 4 NNKLVVKDNALIDASFNLSLIEQRIMLLAIVGARESSN--LTPDTPIEVLVSDYIHQFKV 61 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 S A +R+A K+ +E + + + + W K + S GL ++++ Sbjct: 62 DSNNAYGLLREAAKTLKRREFSYL---DRYKGLEALTTANWVNKVTYVDSSGLIVLYLSK 118 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 +I L +FT++ + + + + Y++RLYE L ++ + I+ + + Sbjct: 119 EVISLISRLSEQFTKYHIEQVSDFRSKYSIRLYELLIKWLNVAKTE--KYSINDLRSKLG 176 Query: 194 LPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 L + Y M +F+ L V+EIN T + + Y + KKGR T I F + Sbjct: 177 LDATEYSTMSNFKSNVLDRAVSEINKHTNITVEYDQFKKGRVITDIQFRIKSK 229 >UniRef50_UPI0001C42EDF initiator RepB protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42EDF Length = 398 Score = 165 bits (419), Expect = 8e-40, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 15/248 (6%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 AE +++ K + QSN L E L+ +KR++ ++ D + H Sbjct: 3 AEQLILSDSKVSPEYLVTQSNSLIETPQDLTLQEKRIILTLASLVQPGDDNFRIH----R 58 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 I V A+I G+ + ++ K V E+ + W + Sbjct: 59 IKVKDLADIIGIKEKNFYTKVENVIEKLQNKMVTI-------ETERSKLNMHWLSSSEYF 111 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 +G + + L PF + L+ +T F+L + + Y +R+YE L QY K Sbjct: 112 KGQGYVELEFSEKLRPFLLELKQNYTPFKLRNVLRLRSEYYIRIYELLKQYEKVKK---R 168 Query: 182 SLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 ++ + + P Y++ + R + E+ +T + + E+K+GR+ + F Sbjct: 169 VFSLEELRYHLNIPPDKYKQYAHLKNRIILRAQEELKEKTDLIFEFQEQKEGRKVVGVAF 228 Query: 241 SFRDITSM 248 + ++ Sbjct: 229 YIKKNRTL 236 >UniRef50_Q0HPE2 Initiator RepB protein n=2 Tax=Gammaproteobacteria RepID=Q0HPE2_SHESR Length = 230 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 104/235 (44%), Gaps = 11/235 (4%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + +SN L +A+Y L+ ++++ + +I + E ++ +++E+ G+ Sbjct: 3 SKLTVTKSNLLIDASYRLNVQAQKLVLACLSKIDSRPDS--EPKKEIKLTAIEFSELMGI 60 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 A +++ +A + ++ E+ + K G ++ + Sbjct: 61 DIKNAHRELYKAADALFKSSILLRNEHEETELYWIQK------KVKKLRGEGAVTLVWSD 114 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 ++ + L++ FT ++L + + +++RLYE L ++ + + + +D Sbjct: 115 EVLRYICQLKSHFTSYKLRNIASLQSGHSIRLYELLMRF---NATNSRVIALDDFRSALG 171 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 L + Y + + + ++ V E+N R+ + ++Y KKGR T + F+F+ + Sbjct: 172 LEEKYPQFKELNKFVIKFAVEELNQRSDLVITYETLKKGRTVTALAFTFKQNKQL 226 >UniRef50_A0A1K9 Replication protein n=7 Tax=Enterobacteriaceae RepID=A0A1K9_ECOLX Length = 233 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 48/238 (20%), Positives = 106/238 (44%), Gaps = 13/238 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRK-SDGTLQEHDGICEIHVAKYAEIF- 71 + +SN L EA+Y L+ ++R L L + +++ SD E + +Y + F Sbjct: 2 SDLIAYKSNALVEASYKLTLQEQRFLLLCIGRLKSGSDAESTELQKTMTVTAEEYFDSFP 61 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIK-RAHSPSRGLYSVH 130 + A +++A+ + ++ D++ E F W ++ G + Sbjct: 62 DMGRKNAEVQLQEAIDRLWDRSIIL-------KDDEKREEFRWIQYRAQYAKGEGKAQIT 114 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 + ++P+ L+ +FT+ + ++ Y++R+YE L Q+R +G + +D Sbjct: 115 FSDAVMPYLTQLKGQFTRVVIKNISNLSRSYSIRIYELLQQFR---STGERIIALDDFRS 171 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 + YQ ++ L+ CV+E+N ++ + ++ KKGR + F F++ + Sbjct: 172 MLDIEHKYQTYKSLNQQLLRPCVDELNQKSDLAVTLETIKKGRTVVALHFRFKEDKQI 229 >UniRef50_D0T0I0 DNA replication protein n=4 Tax=Acinetobacter RepID=D0T0I0_ACILW Length = 327 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 114/251 (45%), Gaps = 18/251 (7%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + +V++N L +A+Y+LS ++R++ L + + + D + IH +YAE F + Sbjct: 3 NDLVVKNNALIDASYTLSLIEQRLIGLALVKANNQHQEI-TSDTVLTIHAGEYAEQFKVD 61 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYE--------------SFPWFIKRAH 120 S+ A + +++A + + + + G E + W K + Sbjct: 62 SSVAYRALKEASERLFLRYFSYTLYGLEFGKEYTLKPPKKLRDCDIPTTMKSRWVQKIGY 121 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + S GL + ++ + FT + LS+T E T+ YA RL+E L +++ + Sbjct: 122 TESEGLLHFQLTSDVVLLVANSKEYFTSYYLSQTTEFTSTYATRLFELLMKWKNVGHIPL 181 Query: 181 VSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 + I+ + + + P+ Y+ + +F+ R L V V ++N + + Y + K+GR Sbjct: 182 --IPIEQLRGQLGVEPKQYKIISNFKLRVLDVAVEQVNQHSDYTIKYKQHKQGRTIIGFS 239 Query: 240 FSFRDITSMTT 250 F+ + T+ Sbjct: 240 FTLKPKVDKTS 250 >UniRef50_A7FCM5 Plasmid replication protein n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FCM5_YERP3 Length = 342 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 108/239 (45%), Gaps = 10/239 (4%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + +VQSN L +AAYSL+ D+ R++Y+ + +I + ++ E F + Sbjct: 17 NGVVVQSNSLIDAAYSLTIDEMRLVYIAMLKIDSKVKLENGLMPEINVTTLEFREAFNIK 76 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH--SPSRGLYSVHIN 132 S + Q + K ++ + +E+ + + WF ++ ++ + Sbjct: 77 SHTMYNRLNQLGDALLVKPIITFEYDEEKQETVKRKRV-WFTSVSYVDDQESKAINLRFS 135 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI-------VSLKI 185 P L+PF L++ FT+ + E+ +P+AMRLY+ L +YR+ + Sbjct: 136 PELLPFLYALKDNFTKVDFTYLAELDSPFAMRLYQWLQKYRRMKKYNKGDGLVETEPFSL 195 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 + I R L Y F+R L +++IN T + ++Y KKG+ I+F++ + Sbjct: 196 EEIKNRTGLSSKYPEYKIFKRDVLDPAIHKINRVTDISVTYKPVKKGKTIIAIIFAYVE 254 >UniRef50_P17492 Replication protein n=8 Tax=Proteobacteria RepID=REPA_NEIGO Length = 328 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 16/237 (6%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF-G 72 N +V++N L EA Y LS D+ R+L L + + + + I + VA + F Sbjct: 3 NDLVVVKANSLIEANYRLSIDEIRILALTIGTM-----DPKSNQKIFDFTVADFVREFPE 57 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 ++ A K I+ A+K + V D+ F W R + G + + + Sbjct: 58 ISQDNAYKQIQAAIKRIYDRSVK-------TEDKDRVTEFRWVSSRTYFKKEGRFRIAMT 110 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 ++P+ L+ +FTQ++L + +++R+YE + QYR G + ++ + E Sbjct: 111 DEVMPYLTQLKGQFTQYQLKHIAYFNSVHSIRIYELITQYRSV---GSREITVEKLKEWL 167 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 Q+ Y R +R L+ + EIN ++ + + + K+GR + F Sbjct: 168 QVENKYPRFNSLNQRVLEPAITEINEKSDLVVEVEQIKRGRTIHSLNFVIGSKKRTA 224 >UniRef50_B0VVD6 Putative replication protein n=1 Tax=Acinetobacter baumannii SDF RepID=B0VVD6_ACIBS Length = 339 Score = 162 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 51/260 (19%), Positives = 113/260 (43%), Gaps = 21/260 (8%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 M + +I + + +V++N++ EA+Y LS +++R++ + I K G + Sbjct: 1 MLFSYLITRNTKMSKLLVVKANNIIEASYQLSLNEQRLILAAIACIPK--GEEVTDNTGY 58 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA- 119 + + E+ G+ AS++IR+A + + + + A Sbjct: 59 CVTRESFIEL-GVNPKTASREIREACDRLFNRVITITTEAGTFKTRWVQDIMKYNSDWAL 117 Query: 120 --------------HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRL 165 ++ L ++ + ++PF L + FTQ+ L + +++ Y++R Sbjct: 118 ANPEFIQEVAGSDPYAEDYILAAIRFSKSVLPFISNLSSNFTQYFLQDIAGVSSGYSVRF 177 Query: 166 YESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLS 225 YE + Q++ +G +++D + L Y D +R + ++E+N ++P+ + Sbjct: 178 YELMMQFK---STGYRKIRLDDLRNMLDLNNKYPLTADLKRWVIDTAIDELNEKSPITIK 234 Query: 226 YIEKKKGRQTTHIVFSFRDI 245 Y K GR+ THI F+ Sbjct: 235 YKLLKTGRKFTHIELKFKQK 254 >UniRef50_Q0QVZ7 Putative replication initiator protein n=2 Tax=Neisseria lactamica RepID=Q0QVZ7_NEILA Length = 245 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 101/236 (42%), Gaps = 12/236 (5%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 +V +N +T+A L+ +KR+++ + ++ + G ++ ++Y+ + + Sbjct: 18 KNVVMANAITQAGQGLNLAEKRIIFAVIAKM----SGKIDSSGFVKLTASEYSATYNIPV 73 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 A ++ A + + + ED F W + G + + ++ Sbjct: 74 DLAYTQLKSASEGLFNRYISLR---EDDAKGVLVSRFRWLDACKYHDGCGFVIISFSKHV 130 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 IP+ I L +FT+++L + + + Y+ RL E L Q + + ID + ++ P Sbjct: 131 IPYLIDLDEKFTKYKLQQACALRSVYSWRLLELLKQQSN----CWLHISIDDLHYAFETP 186 Query: 196 QSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 S + R + ++ V E+ ++ R+ + +K+GR+ ++F F T Sbjct: 187 ASIRNNFGKLRSKIIEPAVRELTAKDGWRIEWEAQKEGRRVASLLFKFEKAAQRET 242 >UniRef50_A9VVF2 Initiator RepB protein n=14 Tax=Bacillus cereus group RepID=A9VVF2_BACWK Length = 404 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 97/235 (41%), Gaps = 14/235 (5%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 K + + +SN L EA L+ ++++L I +D + + + ++ G Sbjct: 10 KENNIVSKSNTLIEANSRLNLVEQKILLCLASNIEPNDRDFKT----YTFPIKHFHDLLG 65 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 L + ++ + K K + + W ++ ++G + + Sbjct: 66 LNGSTKYSELSKITKELLSKVIEIRT-------GEVLIQVSWLSSAIYNRNKGTIDMRFD 118 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P L PF + L ++FT +RL+ ++ + YA+R+YE L QY ++ ++ + Sbjct: 119 PLLKPFLLELSSKFTSYRLANVVKLKSTYAIRIYELLKQYEDLK---ERTISLENLRYYL 175 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 Y +F++R L+ E++ +T + + E K GR+ I F R Sbjct: 176 DAMDIYPNYANFKQRVLKPSQKELDQKTDISFEFEEIKLGRKVQKIKFIIRGQKK 230 >UniRef50_Q2B8G7 Replication initiator protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8G7_9BACI Length = 422 Score = 160 bits (404), Expect = 6e-38, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 108/252 (42%), Gaps = 16/252 (6%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 M + + + I +SN + E+ Y L+ ++R+L + +++ SD + Sbjct: 1 MNDKLNAQIYEIDSKDWITKSNTIIESQYKLTLQEQRILLITASKVQPSDEDFKP----Y 56 Query: 61 EIHVAKYAEIFGLT-SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 + V + G++ I+ +K GK V F + W + Sbjct: 57 KFRVTDLVDKIGISSQTSMYSYIKSVVKGLQGKTVEF-------KKDNKTIVANWLVTSI 109 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 ++ G + NP L FF+ L+ RFT ++L ++ + Y++R+YE L QY Sbjct: 110 YAEQEGTVILKFNPDLKEFFLQLKERFTSYQLENVIQLNSVYSIRIYELLKQYESLRK-- 167 Query: 180 IVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 + ID + E+ + + Y++ + R + E+ +T + ++ E KKGR+ T I Sbjct: 168 -RTFTIDELREKLGIEKSKYKQYGHLKDRVINAAKQELAEKTDISFTFQEVKKGRKVTGI 226 Query: 239 VFSFRDITSMTT 250 +F + ++ Sbjct: 227 IFQINSRKNSSS 238 >UniRef50_A6DT85 Replication initiator protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT85_9BACT Length = 477 Score = 159 bits (402), Expect = 8e-38, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 99/244 (40%), Gaps = 16/244 (6%) Query: 6 VINHKKRKNSPRIVQSNDLTEAA--YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIH 63 + K + + + NDL EA L+ +++++ V I D +E Sbjct: 1 MNKVAKSRKDRYVAKGNDLVEAKRSMHLTTRERKLVAYMVSCISPYDDDFKE----YRFP 56 Query: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 + + + F + A K+ + K ++ + W + + Sbjct: 57 IEDFIQFFSIKDKNAPKEYERIAHGIMSKPFTV-------ENDVERFTATWLSEAKYHKK 109 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 + +++ P L + I L+ +T++++ + N Y+ +YE L QY G S+ Sbjct: 110 QKIFTFRFTPSLKRYLIQLKKFYTRYKMINLIHMENCYSESVYELLKQYETI---GKRSV 166 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 ++ + L + Y +FR + L+ V EIN + + ++Y E K+GR+ + + F + Sbjct: 167 SMEKMRTMLGLERKYPLYSNFRVKVLEPAVEEINKYSDINIAYQEVKEGRKISGLNFEIK 226 Query: 244 DITS 247 + Sbjct: 227 PDPN 230 >UniRef50_B5EWH3 Plasmid replication protein n=2 Tax=Enterobacteriaceae RepID=B5EWH3_SALA4 Length = 354 Score = 159 bits (402), Expect = 8e-38, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 12/238 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 ++ I Q N L E +Y ++ + R+L+L + +I Q + +Y+ ++ L Sbjct: 20 DNKVITQGNQLIEGSYDINLAEIRLLWLALSKI--DSKNPQPEGAEIVLTAPEYSAMYDL 77 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL-YSVHIN 132 A ++ ++ + K + Y E + WF + ++G ++ + Sbjct: 78 ELANSAHQLQSVSLTLGSKPIYTYEWNERKKRVDAVARY-WFSAITYGANKGADITLSFS 136 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG--------IVSLK 184 P + PF L+N FTQ + ++ P+A RLY L +YRK D + Sbjct: 137 PKIAPFLYDLKNEFTQMNVFAMAKLDTPFAFRLYSWLSRYRKLDKYKNPKTGVISTEKIS 196 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 IDW+ +R L Y +FR R L V+ IN T + + Y GR+ TH++F++ Sbjct: 197 IDWMKDRSGLTGKYADFKNFRVRVLNPAVDAINRTTDLTVRYETVTTGRKVTHLIFNY 254 >UniRef50_A1U7R0 Initiator RepB protein n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7R0_MARAV Length = 409 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 107/254 (42%), Gaps = 20/254 (7%) Query: 3 ETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 + +I + ++ +SN L EA Y LS + ++L + + +IRK + E Sbjct: 10 QLDLIVVDENTTKLKVAKSNALVEAQYELSGKEHKLLLVAMAEIRKDQTSFYEQ----VF 65 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 V AE+ + + A ++ + K+V + G+E + W K Sbjct: 66 SVQDLAELLDFSKSSAYSELDRLSTGLMRKQVEIRNDQTG-----GWEKYQWVTKA--YC 118 Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG----- 177 G + + + L PF +GL RFT + LS ++ + YA+RLYE L Q+ + Sbjct: 119 RNGQFGIRFSEELKPFLLGLVGRFTLYELSRVLKMNSNYAIRLYELLKQFERFGKRTFSL 178 Query: 178 --SGIVSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPM-RLSYIEKKKGR 233 + + P+SY R + +R L ++++ T +++ + R Sbjct: 179 DPKMTSKEDWESFPKLMGYNPKSYARFSNLNQRVLSPAISQVEQYTEFRSVNFSVIRYNR 238 Query: 234 QTTHIVFSFRDITS 247 + +VFS++ + + Sbjct: 239 KPVALVFSWKTVDT 252 >UniRef50_C8PXW7 DNA replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PXW7_9GAMM Length = 321 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 117/231 (50%), Gaps = 5/231 (2%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 +P++V+SN+L +A+YS+ + R++ L + R+S+ L++ + + I YA+IF ++ Sbjct: 6 NPKVVKSNELIKASYSMDLVEHRLIGLAIYTARESNKGLRKFEHLV-IKPNTYAKIFNVS 64 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 A K ++ A + ++V F E ++ W + A+ ++ + P Sbjct: 65 LDAAYKALKDAAEKLFERQVTFRDTYEGDPRKR---KTRWVSEIAYIENKAELQLIFAPA 121 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 ++ L+ +FT++ L T + Y+ RL+E + Q+ I + + + E++ L Sbjct: 122 IVDEITKLEEQFTEYYLKMTANFDSQYSYRLFELVKQWNLNKVKEIPNFDLSTLREQFGL 181 Query: 195 PQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 + Y+R+ +F+++ L V EIN T + +SY + K GR T F+ + Sbjct: 182 EKHEYERLDNFKKKVLDKAVKEINDHTDINISYSQIKSGRVITGFKFNVKR 232 >UniRef50_A8UX05 Replication initiator protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UX05_9AQUI Length = 333 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 12/230 (5%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 ++ +SN L EA Y L+ ++ R++ ++ I D + I V I L Sbjct: 12 DNKVTKSNKLIEAKYRLTLNEVRLILAYISLISPVDNGF----PVARIKVKDLKGILELN 67 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 + + + L+ + + + EE+ G+ W + ++ +G + ++ Sbjct: 68 GESMYEALSRTLEKLRSRVIKIQKLEEN-----GFIITGWIDRAEYNGRKGELEIVLSKD 122 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 L P+ + L+ FT ++L + + YA+R+YE L QY K G KID + E Sbjct: 123 LEPYLLHLRKNFTTYQLRYVLRLRSVYAIRIYELLKQYEKV---GKRVFKIDELKELLGA 179 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 Y+ F+ + L E+ +T + S+ E K+G++ + + Sbjct: 180 EDKYRLYGHFKNKVLLKAQRELEEKTDISFSFREIKQGKKVVAVELIIKK 229 >UniRef50_D2QW11 Initiator RepB protein n=2 Tax=Spirosoma linguale DSM 74 RepID=D2QW11_9SPHI Length = 331 Score = 157 bits (396), Expect = 4e-37, Method: Composition-based stats. Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 21/239 (8%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 S I Q N +T A Y S Q + + + +RK DG+ EI V + + G Sbjct: 14 SQSVSIRQHNAITTARYEYSELQLDLFFYLLSILRKDKT-----DGVYEIVVKDLSTLTG 68 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 +++A + + P K YE F + + G V ++ Sbjct: 69 KEYK--YGYLKKATEEMGSRMFEVSTP-------KSYEQLWMFQRVKYVIGEGRIEVRLS 119 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 + P+ L++ FT F L + + YA RLY Q+ + + + + + Sbjct: 120 DDIKPYLFDLKDNFTSFELYAALRLGSKYAKRLYTLCSQWNDKGETPVYKIP--ELKKML 177 Query: 193 QL-----PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 L + Y+++ +F+R L +IN T +++ Y K+GR + F+ + Sbjct: 178 SLLDDKGNEQYKQIGEFKRFVLDEAKKQINEHTDLQIDYTLYKRGRSFQSVSFTIKRQP 236 >UniRef50_D0SHJ5 DNA replication protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SHJ5_ACIJO Length = 311 Score = 157 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 111/230 (48%), Gaps = 10/230 (4%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 K S +V+ N L +A+++LS ++R++ + + + R+ D ++ V Y + F Sbjct: 2 SKESRLVVKDNSLIDASFNLSLVEQRIMLMAIVEARELPK--LTFDTPIKVSVKSYIDQF 59 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 + S+ A + ++ A+ + ++ +Y P D W K ++ +G + Sbjct: 60 KVASSTAYESLQDAVDTLFERQFSYYDPVMD-----ERFKERWIYKASYIDDKGHVVMFF 114 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 P +I L FTQ+ + E + + Y++RLYE L +Y++ S ID + Sbjct: 115 TPTVISMISRLYKNFTQYLIDEVSDFKSKYSVRLYELLIKYKELGSSK--KYTIDELRSL 172 Query: 192 YQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 + + Y+ M F+ L V EIN++T +++ Y + K+GR +HI+F Sbjct: 173 LGVENTEYKTMSLFKVNVLDKAVKEINTKTDIQIKYDQFKEGRTISHILF 222 >UniRef50_Q6LPZ0 Hypothetical replication initiation protein n=1 Tax=Photobacterium profundum RepID=Q6LPZ0_PHOPR Length = 246 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 91/243 (37%), Positives = 135/243 (55%), Gaps = 8/243 (3%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI-CEIHVAKYAEI 70 +K+ I Q+N LT AAY+L+R++KR++Y+ +D I E +I+ YA I Sbjct: 6 KKSDIIIRQANALTSAAYNLTRNEKRLVYIALDDIINKRIQCNEFGQYPVKINHIDYASI 65 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 F S +DI + S KEV+FYRP+ED G ++ W KR++ S G +V Sbjct: 66 FEDDSENIGQDILKLTASLNKKEVIFYRPDEDIGKN-ALDAISWTTKRSYRASLGATTVF 124 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 N L+ + FT+F + E + +PYAMRLYESL Q+ V+L++DW+IE Sbjct: 125 FNAELVNIITKVDTNFTRFLMGEAGRLNSPYAMRLYESLQQW---PDQQSVTLEVDWMIE 181 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK---KGRQTTHIVFSFRDITS 247 RY+LP+SY+RM DFRRRFL+ V EIN T + + Y E + + I F++ + T Sbjct: 182 RYELPESYRRMSDFRRRFLKPAVKEINEHTSIMIDYEEVADKIRSNRIAAITFNYSNRTE 241 Query: 248 MTT 250 T Sbjct: 242 KAT 244 >UniRef50_Q52204 Putative plasmid replication protein n=2 Tax=plasmids RepID=Q52204_9ZZZZ Length = 294 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 99/249 (39%), Gaps = 21/249 (8%) Query: 5 AVINHKKRK---NSPRIVQSNDLT-EAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 + N+K ++V++N++ A L +++ V +++ D E Sbjct: 25 EMKNNKYEIAIERDYKVVKANEIIQRAQCDLGLLEQKTFCYAVSKVKPDDIAGTE----Y 80 Query: 61 EIHVAKYAEIFGLTSAE--ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKR 118 + +Y ++ G+ + ++++ ALK K + Y W K Sbjct: 81 TFSINEYCDVCGINRNDGRTIENVKSALKRLRDKSFYLQ------DENGNYVLIGWLGKA 134 Query: 119 AHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 SP G + + + + GL N +TQ+ L + + Y++RLYE L Y Sbjct: 135 RVSPKSGKIKIKFDEDMQKYLTGLYNNYTQYSLLCVLPMKSAYSIRLYELLKSYAGLHRK 194 Query: 179 GIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 +I+ + + P Y + RR+ L V V EIN T + +S+ KGR+ I Sbjct: 195 ---EFEIESLKAKLCAP--YSDFYEVRRKVLDVAVREINLYTDLEVSWQPINKGRKVVKI 249 Query: 239 VFSFRDITS 247 F + S Sbjct: 250 HFDIKQRNS 258 >UniRef50_Q2A6M6 Replication protein B n=3 Tax=Pasteurellaceae RepID=Q2A6M6_PASTR Length = 372 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 96/234 (41%), Gaps = 15/234 (6%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF-GL 73 + QSN L E +S ++R++Y + +I ++ + V +A+ F + Sbjct: 26 RYLVQQSNALIETTQKMSLVERRLMYHVLSRINP-----KKPQQEYVLRVEDFAQDFPQM 80 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 S ++ A+ S + + + + F ++ + G + + Sbjct: 81 GSGTIYNQLKDAVVSLFKRSIQLLT------ERGTTKIFYLLQEQEYKDGEGYLRMKFSD 134 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 +P L+ +FT L K + + ++++LYE L QY+ G + ++ + + Sbjct: 135 STMPLIFDLKEKFTTMVLENFKFLDSVHSLKLYELLYQYK---SQGWREITVEDLRFFFG 191 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 +Y F+++ ++ + EI+ ++ + + + GR T + F F + T Sbjct: 192 CEDTYPDFKLFKQKVIEPAMKEISEKSDLLVQAEYLRTGRFVTSVKFIFVEKTD 245 >UniRef50_UPI0001AF0368 DNA replication protein n=1 Tax=Acinetobacter baumannii AB900 RepID=UPI0001AF0368 Length = 373 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 52/246 (21%), Positives = 108/246 (43%), Gaps = 13/246 (5%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 + + + ++N L A+Y+L ++R++ L + R + L + I EI + YA+ Sbjct: 3 ELIRNSDVYKANALINASYALDTAEQRIILLAILVSRNKNADL-TAETIIEIPASLYAQK 61 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 F T + A K +++A + + + + W + ++ L ++ Sbjct: 62 FNTTVSAAYKTLKEAEDTLFERRFSY---TTMRNGKIEVVRSRWVSRVSYVKDDALLTIT 118 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 + P +IP L+ FT++ + +++T+ Y +RLYE + ++ D + Sbjct: 119 LAPDVIPLVTKLEGTFTKYAIDNLRDVTSKYGIRLYELVASWKNSDIRKTPVYDFEDFRA 178 Query: 191 RYQ-LPQSYQ--------RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 + LP Y+ M +F +R L+ +++INS T + ++ + K GR T I F Sbjct: 179 KMGLLPHEYRDKKNPESTDMTNFNKRVLKPAIDQINSFTDLFITEKKIKTGRNITGIYFE 238 Query: 242 FRDITS 247 T Sbjct: 239 VSLKTD 244 >UniRef50_Q629K5 Replication protein n=2 Tax=Haemophilus somnus 129PT RepID=Q629K5_HAES1 Length = 323 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 17/232 (7%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N I +S+ + EA Y L+ ++R++ L + ++ + + ++V YAE F L Sbjct: 2 NDLIIRKSHPIVEAGYKLTIAEQRIILLSLAKLDNRNIE----NSNVTLYVKDYAEAFNL 57 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWF-IKRAHSPSRGLYSVHIN 132 + A ++ +A K + ++ +E F W + + G S + Sbjct: 58 SETSAYSELERASKRLYDRSIILKGEDETTE-------FRWIESRTKYHKGEGRISFQFS 110 Query: 133 PYLIPFFIGLQN--RFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 ++P+ L FTQ+ L + Y++R+YE K G ++ID + Sbjct: 111 RRVMPYLFELDKRLGFTQYELLSVSGFKSAYSIRMYELAI---KLLGMRNQQVEIDELRR 167 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 QL YQ +R + + NEIN ++ + L+ K+GR+ + F Sbjct: 168 ILQLDDKYQEFKRLKRDVINLACNEINEKSDLLLNIEPVKRGRKIIALEFQI 219 >UniRef50_D0U573 Replication initiation protein RepB-like protein n=1 Tax=Psychrobacter sp. J466 RepID=D0U573_9GAMM Length = 309 Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 104/245 (42%), Gaps = 14/245 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQ-EHDGICEIHVAKYAEIFG 72 + +VQSN+L AAY+++ +K++L + +I + V + A+IF Sbjct: 2 ENNLVVQSNELVLAAYTMTTKEKQLLLTCISRIDSRPDAPNITKQTKFTVTVEEVAKIFY 61 Query: 73 LT--SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 A +D+ QA +EV+ + + + P+ ++ Sbjct: 62 TDSTKKNAFRDLEQASNRLFDREVLIALEDNKT------LRTRFVSGVLYDPNGEQITIT 115 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 ++P+ L+ FT++RL E E+++ ++MRLYE + + S+ +D Sbjct: 116 FAEDVLPYLTQLKANFTKYRLMEVSELSSIHSMRLYELIVCWV-GQYQYTKSMDLDDFRY 174 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR----QTTHIVFSFRDIT 246 + Y++ R R ++ ++E+N T +++ KK R + + F + + Sbjct: 175 VMGIKGKYKQFGQLRERVIETAIDEVNESTNYKITVEYHKKSRGKGYEGLTLKFHRKTLD 234 Query: 247 SMTTG 251 +T+ Sbjct: 235 KLTSA 239 >UniRef50_Q1PHH6 PCZ2.1 n=1 Tax=Planococcus sp. ZOYM RepID=Q1PHH6_9BACL Length = 391 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 16/239 (6%) Query: 14 NSPRIVQSNDLTEAAYS--LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + + QSN L +A Y LS Q++++ V +I+ D + I E+ + + E+ Sbjct: 3 KNHLVTQSNSLVDARYHEPLSARQQKIVLSVVSKIQIDDEDFK----IYEVRIRDFHEML 58 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 GL ++++ + K + R ++ + WF + G Sbjct: 59 GLEGEPKYTEMKKITEELLKKSLEITR------EKGRFLQVNWFSSIEYFEHEGRIEFSF 112 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 +P L P+ + L+ +T +RLS +++ ++RLYE + ++ G + I+ + +R Sbjct: 113 DPKLKPYLLDLKKAYTSYRLSNILSLSSASSIRLYELMKKWEYL---GKWEITIEKLKDR 169 Query: 192 YQLP-QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 + QSY +F+ R + +NE+N +T +++S+ E K GR+ F+ R Sbjct: 170 LGIKQQSYNVYGNFKNRIIVPSINELNEKTDIQISFKEIKTGRKVVGFEFTIRHSPEKE 228 >UniRef50_Q45152 RepA protein n=3 Tax=Bacteroides RepID=Q45152_BACFR Length = 331 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 96/236 (40%), Gaps = 21/236 (8%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQ--------EHDGICEIHVAK 66 + ++QS +T A Y + +KR++Y V+ + ++ EHD I++ Sbjct: 5 NKDLIQSYIMTTAKYDFNVYEKRIIYRLVEMAQGELQGIKFANNCQKIEHDLFSCINITM 64 Query: 67 -YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 A + + +++AL+S K + D++ ++S Sbjct: 65 PIACLLNGEEDKNYARVKEALQSLQRKIFEY-------EDDEVWQSISIIALPYIRKRSS 117 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 + S ++P + + + ++ L + ++MR YE L + P + I Sbjct: 118 VISFQVHPRVWDCILNFSKGYRKYELKAAMSFKSQFSMRFYELLSNQKTP-----LIYSI 172 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 D + E + + Y+R+ DF R+ ++ E++ +P + K GR+ T I F Sbjct: 173 DQLKEMFCVADKYKRVNDFMRKVVEAAKKELDEVSPYTFEFTPLKSGRKITAIKFY 228 >UniRef50_Q0SW56 Initiator RepB protein family n=4 Tax=Clostridium perfringens RepID=Q0SW56_CLOPS Length = 320 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 90/234 (38%), Gaps = 13/234 (5%) Query: 14 NSPRIVQSNDLT-EAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 + + +SN ++Y LS ++++++ ++ +D + ++ + E+ G Sbjct: 3 KNYLVTKSNYFIMNSSYDLSLEEQKIILTLASMVQPNDEEFKP----YIFKISDFMELLG 58 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + +I + K K + W + G+ + + Sbjct: 59 VNTKTKYTEIPKITKDLMKKVFEIEEDD-------VIIQTAWLSSATYKKGSGIVELEFS 111 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P L P+ + L + FTQ++L+ + + Y+ R+YE L + V +KI + Sbjct: 112 PKLKPYMLKLNSMFTQYKLANILSMKSKYSPRIYEILK-CNEFKKQNFVEIKITELRRLL 170 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 + Y DF+R + E+ + + + E K GR+ T I F Sbjct: 171 KAENIYPLYSDFKRYIIIRTKKELKKLSDIWFEFEEIKTGRKVTSIRFYIYSNN 224 >UniRef50_B5KF63 Initiator RepB protein n=1 Tax=Octadecabacter antarcticus 238 RepID=B5KF63_9RHOB Length = 455 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 93/246 (37%), Gaps = 14/246 (5%) Query: 5 AVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHV 64 + K K+ + + LS Q++++ + T +EH +I Sbjct: 2 KMKPEKYSKDKQILKKHVAAIHIGAKLSLLQRKLVNALLYNAYDQLLTAKEH----KISA 57 Query: 65 AKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 + E+ G S + ++ ALK V F E+D +E+ Sbjct: 58 SVLCEMIGFDSHNS-AYLKGALKGLMETVVEFDVLEDDGKT--SWEAMVLLPYAK--LKG 112 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G+ + L + +++ LS +E+ + +A+ LYE+ +Y + + Sbjct: 113 GVCTYRYEQSLAEKLYH-PDVYSKINLSVLREMKSAHALVLYENCYRYVDIAHTPWWDVD 171 Query: 185 IDWIIERYQLPQ--SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 + + + Q SY++ R +Q + E+N + ++L K+KGR T + F Sbjct: 172 V--FRKLMSVDQMISYKQFKLLNRAVIQPAMKEVNELSNIQLELETKRKGRTVTGLRFII 229 Query: 243 RDITSM 248 R + Sbjct: 230 RPNPQL 235 >UniRef50_C9MTU8 Initiator RepB protein n=2 Tax=Bacteroidales RepID=C9MTU8_9BACT Length = 325 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 100/247 (40%), Gaps = 22/247 (8%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY----- 67 K + +QS T A Y S +KR++Y V+ + + D + +I + Sbjct: 6 KGNELAIQSYIFTTAKYDFSAYEKRIMYRLVELAQDEIKGIMIRDNMHKIEPTLFGREIT 65 Query: 68 ---AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 A+I + ++A KS A K V + DEK ++ + + Sbjct: 66 MPVADILRDEKDQNYTIAKKAFKSLAQKGVEY-------EDEKIWQYTSIISSPKINKIK 118 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G + + + + ++ L + Y+MR+YE + ++P + Sbjct: 119 GSVVFQVADDIWRCLLDFTKGYRKYELITAMGFKSVYSMRMYELMSGQKRP-----LEFT 173 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF--SF 242 + + +R++L Y ++ DF+R L + E++ +P +YIE K+GR+ F +F Sbjct: 174 FEDLKQRFKLKDKYSKVNDFKRWVLDIAKKELDESSPYSFNYIEVKEGRRVVSFKFFPTF 233 Query: 243 RDITSMT 249 + T Sbjct: 234 KPDNKDT 240 >UniRef50_D2QW27 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QW27_9SPHI Length = 308 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 92/242 (38%), Gaps = 24/242 (9%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 + I Q N LT A Y ++ +K +LY+ V +RK D + ++ V + AE+ G Sbjct: 2 SKNIEIWQDNVLTTARYEMTEAEKNLLYMVVASVRKDD----PPTKMYQVSVKEMAEVTG 57 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + +QA + + D + + G+ + ++ Sbjct: 58 -QAELKFETYKQATRKLMSRVFETTLTNGD------VLQASFIASALYRKGTGIIQIELS 110 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 + PF++ L RFT+ +L + + YA R+YE LC Y+ + + Sbjct: 111 QMVRPFYVDLNTRFTKMQLVAAISLNSTYAKRIYELLCMYKNMKDKTFRR-GLTELKTML 169 Query: 193 QL------PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK-----KGRQ-TTHIVF 240 + SY F + L+V EIN T + +Y +GR+ + F Sbjct: 170 WIIDPKTGRDSYTNWTRFEKAVLEVAAKEINGHTDITFNYKPIYGDRPGRGRKPVVEVEF 229 Query: 241 SF 242 Sbjct: 230 EV 231 >UniRef50_C9KZX8 Initiator RepB protein n=4 Tax=Bacteroides RepID=C9KZX8_9BACE Length = 334 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 94/256 (36%), Gaps = 21/256 (8%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKS--------DGT 52 M N+ + +QS +T A Y S +KR+LY V+ + D Sbjct: 2 MKTKQQKNNSVTVVNKDQIQSYIMTTAKYDFSVYEKRILYRIVEMAQGELQGVRFATDCK 61 Query: 53 LQEHDGICEIHVAK-YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYES 111 EH +H+ A + S E ++QAL S K + DEK + S Sbjct: 62 KIEHTLFDTVHITMPIASLLNGESDENYTRVKQALLSLQKKIFTY-------EDEKEWIS 114 Query: 112 FPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ 171 + S I+ ++ + F ++ L+ + + Y+MR YE L Sbjct: 115 ISIIALPKIKKRSSVVSFQIDSHIWDCCLDFSKGFRKYELATAMKFKSVYSMRFYELLS- 173 Query: 172 YRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 + ++ + E +++ Y + DF R+ ++ NE++ +P + K+ Sbjct: 174 ----GQKTKLIYPLEQLKEMFKVQDKYAKTNDFVRKVIEPAKNELDELSPYTFEWSANKE 229 Query: 232 GRQTTHIVFSFRDITS 247 G++ F Sbjct: 230 GKKIVSFNFYPIFKPE 245 >UniRef50_Q3HYC5 Rep n=1 Tax=Actinobacillus pleuropneumoniae RepID=Q3HYC5_ACTPL Length = 337 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 14/244 (5%) Query: 10 KKRKNSPRIVQSNDLTEA--AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY 67 + + P +SN+L +A L+ + R+ L V ++ + E V ++ Sbjct: 2 SENTSKPISTKSNNLIDAGFFKKLNGMEMRIFNLAVSRLNPMRT--LNQNRRFEFSVKEF 59 Query: 68 AEIFG--LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 E A ++++ A+ + V + E +R+++ +G Sbjct: 60 LEFNSGITDQMHAYENVKNAVLNLGKIWVEVDPIDGYDKTE-----VSLLTRRSYTKGKG 114 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 + + + ++P+ ++N +T L + + Y+++LYE L ++ G VS+K+ Sbjct: 115 SFMIEFHEDVMPYLAEIKNNYTSMLLDTFGSLKSEYSLKLYEILSRW---AFKGFVSIKL 171 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 D + + Y R +F +R L V EIN++T + +S + GR + + F D Sbjct: 172 DELKILLDVVGMYDRYNNFSQRVLTPAVKEINAKTNLIVSVKPIRTGRAISELEFKIFDK 231 Query: 246 TSMT 249 + Sbjct: 232 SKAI 235 >UniRef50_Q3IEM2 Putative RepA n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IEM2_PSEHT Length = 320 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 18/239 (7%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 KNSP+IV +N L A YSL +++R++ L + +I + + G I+ +YA+ F Sbjct: 3 SKNSPKIVFANKLLHAGYSLEINEQRLINLALSKINS----KKSNPGQIVIYPTEYAKCF 58 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG---LYS 128 GL + + + A++S K V D+ S PW + + + Sbjct: 59 GLRKSSVYEQLSSAVESLKDKFVSI------LDDKGEAVSIPWVSNATYEKLKNQGSFIT 112 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG-----IVSL 183 + + + P+ ++ FT+ T ++ + + RLY L + R +V+ Sbjct: 113 LEFSKEIEPYIFNIEKNFTRLFFHNTVKLNSLASFRLYALLNRVRNYHNYKRKGEVVVNF 172 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 ++ + ++ L +SY DF+ R L + +IN+ T + +++ KK G T I F++ Sbjct: 173 QLPEMKQKLFLSESYGAWRDFKNRVLLPAIEKINAHTDICVTFKPKKMGNCITAIEFAY 231 >UniRef50_Q8VQM9 Replication protein n=2 Tax=Prevotella RepID=Q8VQM9_PREIN Length = 326 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 95/247 (38%), Gaps = 22/247 (8%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY----- 67 K + +QS T A Y + +KR++Y V+ + + D + +I + Sbjct: 6 KGNELAIQSYIFTTAKYDFNAYEKRIMYRLVEFAQDEIKGIMIRDHMHKITPTLFGREIT 65 Query: 68 ---AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 A+I + ++A +S A K V + D++ ++ + Sbjct: 66 MPVADILRNEKDQNYTIAKKAFRSLAQKGVEY-------EDDEIWQYTSIISSPKIDKIK 118 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G + + + + ++ L + + Y+MR+YE + ++P + Sbjct: 119 GYVVFTVLDDIWRCLLDFTKGYRKYELVTAMQFKSVYSMRMYELMSGQKRP-----LEFT 173 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF--SF 242 + + R+ + Y+ + F+ R L + E++ +P +YIE K GR+ F +F Sbjct: 174 FEDLKIRFGVKDKYKLVGHFKTRVLDIAKKELDESSPYSFNYIEVKGGRKVIGFKFFPTF 233 Query: 243 RDITSMT 249 T Sbjct: 234 NPDNKDT 240 >UniRef50_B9VWK0 Putative replication protein n=1 Tax=Pseudomonas sp. CG21 RepID=B9VWK0_9PSED Length = 311 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 26/245 (10%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + I+Q N +T Y S + ++++ + + + IH++ +I Sbjct: 8 SDKLIIQHNAITSGRYDFSACELDIMFMILANL-------NPGEDTYSIHISDIEDIT-- 58 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + A + +++A + + E + F + G V + Sbjct: 59 SRAWNYQQLKEATELMLSRVYQIETAE-------AFTQLVLFQYFDYMKGTGTVKVRLTE 111 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY- 192 +P+F L++ FT +L T+ YA R+Y CQYR ID E Sbjct: 112 KAVPYFFDLKSNFTSLQLKAILSCTSKYAKRIYALACQYRVMGTK---RFTIDEFKEMLY 168 Query: 193 ------QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 + P+ ++R+ ++ L V +IN T + Y KK+GR I+ Sbjct: 169 LKDPKGKAPEQFERISSLKKDVLDVAKKQINEHTDIHFDYELKKRGRSFHWIIIHVDKQK 228 Query: 247 SMTTG 251 + Sbjct: 229 TPQLA 233 >UniRef50_A7GJQ6 RepB family protein n=1 Tax=Clostridium botulinum F str. Langeland RepID=A7GJQ6_CLOBL Length = 337 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 108/244 (44%), Gaps = 16/244 (6%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 + NH + + I QSN L EA+Y+L+ +++++ L I+K D +E + Sbjct: 1 MKNHIESAKNNWIYQSNKLIEASYTLTVIEQKLIRLLASMIKKDDTDFKE----YKFKTK 56 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 +I + + +DI + + +E + W + +G Sbjct: 57 DLIKILNTSDSRFYRDIDNITDLLMQRIIKIKDISNG-----EFEKYHWVDVAKY--KKG 109 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 + + IN L PF++ L +T+++ + + Y+ R+YE L QY K G + I Sbjct: 110 VLILKINKDLKPFYLSLD-WYTKYQFKNIMQFKSTYSFRMYELLKQYEKI---GHRIITI 165 Query: 186 DWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 + I + + Y + + +++ ++V +NEIN+ T + + Y E K+ R+ T I F + Sbjct: 166 NEIRSMLDIKKNKYPKYANLKQKVIKVSINEINTNTDLFIDYEEVKESRKITSIKFYIKS 225 Query: 245 ITSM 248 Sbjct: 226 KVQD 229 >UniRef50_B5Z4W0 Plasmid replication protein n=1 Tax=Escherichia coli O157:H7 str. EC4115 RepID=B5Z4W0_ECO5E Length = 336 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 97/243 (39%), Gaps = 14/243 (5%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 I QSN +T+ Y ++ D+ R+L L + +I + D + I ++ E+F + Sbjct: 12 ELIFQSNAITDGVYKITLDEFRLLNLAISKISRHDK----PEKRIRITTKEFVEVFNIKD 67 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS---PSRGLYSVHIN 132 + GK + Y ++D+G + W + + + + Sbjct: 68 KNVKNRLSAIADGLLGKTIDTYSFDQDSGKKTKRRRL-WLSEVEYDIEGEENVFLEIVFS 126 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS------GIVSLKID 186 + L++ FT F L T+P++ R+Y LC+YR ++ + Sbjct: 127 TEISDLLFQLKDNFTLFALRAISAFTSPHSFRIYAWLCKYRNMYNYRKGELITTDTISVY 186 Query: 187 WIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 L +SY+ +++ ++ +NEINS T + + E K R+ I FSF Sbjct: 187 DFKVMLGLEKSYEEYKFLKQKVIERSINEINSSTDISVVLNEYKASRKVIAISFSFVRED 246 Query: 247 SMT 249 T Sbjct: 247 HPT 249 >UniRef50_C6ZBN9 Replication protein n=1 Tax=Bacteroides sp. 4_3_47FAA RepID=C6ZBN9_9BACE Length = 340 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 91/250 (36%), Gaps = 24/250 (9%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRK----SDGTLQEHDGIC------- 60 + S I QSN T A Y + +K +LY +Q + + +EH+G Sbjct: 6 KTQSKDIQQSNYFTTAKYDYTLQEKIILYRVAEQAFEYREANKEWFKEHEGEYIAKDHVS 65 Query: 61 -EIHVAKY--AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIK 117 + + + E S + D+ A KS K + F + + Sbjct: 66 FRLPITHFMTKEQRADGSGKCYDDVVAAFKSLTSKRIEFQTKD-------AFSFGALLNS 118 Query: 118 RAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG 177 P G+ ++ ++ + FT+ L E+ + Y+MR YE ++ Sbjct: 119 ADREPGEGIIYFTVHKFVWQSALDFTKGFTKLDLVVAMELKSAYSMRFYEIARRW---SD 175 Query: 178 SGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 + I + ++ + + + Y D +R + E++ P SY + K GR+ Sbjct: 176 TKIWKISVEDFRDLFGCKEKYPAFNDMKRYIIDNAKEELDRVAPWSFSYEQHKVGRKVES 235 Query: 238 IVFSFRDITS 247 F F +I Sbjct: 236 FTFYFYEIPK 245 >UniRef50_A3PQH1 Plasmid replication initiation protein n=18 Tax=Rhodobacterales RepID=A3PQH1_RHOS1 Length = 437 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 83/237 (35%), Gaps = 14/237 (5%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + ++ + L+ Q+++ + + T +H I + G Sbjct: 30 RESVKKNVAAIHVSGKLTLLQRKLSNVLLLNAYDHLITRPKHA----IDARTLCLMIGYN 85 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 S + + ++ +L+S A + ++ E G S G+ +P Sbjct: 86 SNDM-ETLKASLRSLAETVAEWDMLDQKGRQEWGV--SSLLSYAK--LSGGICEYAYSPA 140 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 L F L+ + T+ +A+ LYE+ ++ + +G + I + Sbjct: 141 LAEKLHD-PKVFALINLNIQRRFTSGHALALYENCFRFVRTGSTGWWPIDI--FRRLMGV 197 Query: 195 PQS--YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 S Y+ + ++ V E+N + + ++ +K R T + F ++ + Sbjct: 198 DDSAYYENFKQLNAKIIKPAVAEVNKSSNIIVTPEFRKMARAVTDVRFLIKENPQLA 254 >UniRef50_A6XA85 Rep n=1 Tax=Bifidobacterium bifidum RepID=A6XA85_9BIFI Length = 289 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 92/238 (38%), Gaps = 20/238 (8%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC--------EIH 63 + + ++QS +T + Y S +KR+LY V+ ++ + + G+ + Sbjct: 4 KITNKDVIQSYLMTVSKYDFSVYEKRILYRLVEAMQCEIEGKKLYPGLRIEKTLYDDRVV 63 Query: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 + + E +++AL K F D + ++ K + Sbjct: 64 LMPISAFLANDDDENYTRVKKALLDLRNKSFEF-------DDGQIWKVIGIIEKPQFNYK 116 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 RG I P + + F ++ L E T+ Y+MR YE + +P + Sbjct: 117 RGWVRFEIQPEVYNAVLNFSKGFRKYELKTAMEFTSQYSMRFYELMSGQERP-----LIY 171 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 I+ + + + Y+R PDF +R + E+++++P Y K+GR + Sbjct: 172 TIEDLKIMFGVQDKYKRNPDFIKRIIVPAKEELDAKSPYSFEYKILKEGRSFHSLKLY 229 >UniRef50_Q2A086 Putative replication protein n=1 Tax=Sodalis phage phiSG1 RepID=Q2A086_9VIRU Length = 329 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 11/245 (4%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 M+ + H+K IVQ NDL A Y L D R+L L + ++ + G+ Sbjct: 1 MSHRPLALHEKESKQQVIVQHNDLITARYILGIDGLRLLLLLLSKVNQRGDNP----GLI 56 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 +I + ++ E FG+ + + I A+ + + Y +E + Sbjct: 57 KITIREFQEAFGIPNKNVYRCINNAISALWEGSIEIYVQKERMKALRISRWITDQTYIKE 116 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKP----- 175 + + +NP L PF + FT + I + + RLY L + Sbjct: 117 DGKHVVIEITLNPKLDPFLFNMATNFTWTNFEFIQNIRSVTSFRLYMYLISCKNHPLCKR 176 Query: 176 DGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQT 235 +G VS+ ID + + R D +++ + + +IN+ + + + K+GR Sbjct: 177 NGFFEVSILIDDFKTLF--STNCARFFDLKKKSIDPAIQDINTYSNISVHCKTVKEGRSV 234 Query: 236 THIVF 240 + F Sbjct: 235 VALRF 239 >UniRef50_A4JWE3 Initiator RepB protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JWE3_BURVG Length = 402 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 34/239 (14%), Positives = 77/239 (32%), Gaps = 13/239 (5%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + + + + + SLS +++++ + + T +EH E Sbjct: 21 KLDERELRKHVATIHVSGSLSLVERKIVNVLLLHAYDDLLTKREHTMSVRF----LCEAI 76 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 G S+ K + +A ++ V + + + ++ G + Sbjct: 77 GWDSSNDHKKLAEAAENIMRNIVTVNMFSDGSEE---WKKTALVSSVGV--KNGRVTYAY 131 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 +L F + + + YA+ LYE+ +++ + +D E Sbjct: 132 IEWLAERLAR-PEVFAAIDIKIQRRFKSGYALALYENCIRFKGVGQTRYA--PVDTWKEI 188 Query: 192 YQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 Y+ F L+ + EIN + + KK GR+ I F ++ Sbjct: 189 LGATGKMYEEYRHFSNHVLKTAIKEINDVADIDVDLRVKKDGRRIVEIQFGVKEKAQAE 247 >UniRef50_Q9LAL2 Putative uncharacterized protein n=1 Tax=Moraxella catarrhalis RepID=Q9LAL2_MORCA Length = 429 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 89/258 (34%), Gaps = 26/258 (10%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 I +SN L E A+ LS + ++ L ++++ ++ I ++A + Sbjct: 15 KEIEIFKSNALVEGAFDLSPAEHDLMTLAINKLFSQGVGGKQ----VFISAKEFAIANQI 70 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYES-----------------FPWFI 116 A + + + K + ++ G E W Sbjct: 71 NENYAYEVLAETAKRLQKRTFKAKIYKDGLKKLVGEEDPYSVARPKGDYELLDLHANWVQ 130 Query: 117 KRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR--- 173 A+ G + + L +T++ +T ++ + RLYE C+ Sbjct: 131 AVAYQEKSGFIYLMFSDVLAYLIQKTGEAYTKYPYEKTIDLKRFHTKRLYELCCKRAGSK 190 Query: 174 --KPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK 231 V++ +D + + Y + DF+R L + EIN + L++ ++K Sbjct: 191 PPHGKKYPKVTMVVDEWKDFFGCINKYGAVNDFKRYVLTPVIKEINEQGEFELTFEQEKI 250 Query: 232 GRQTTHIVFSFRDITSMT 249 G+ TH D + T Sbjct: 251 GKIITHFTLIINDKRTKT 268 >UniRef50_C8PV51 Replication protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV51_9GAMM Length = 319 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 96/230 (41%), Gaps = 6/230 (2%) Query: 20 QSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEAS 79 N L A +L +++R++ +RK + + V + + +G+ S Sbjct: 1 MQNRLLNAISNLELNERRLIMFLSPLVRKE-VDKNPYQSTFIVRVKDFQDEYGIKSKAYY 59 Query: 80 KDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFF 139 +++ S K F+ + K W K + ++G + ++ +I Sbjct: 60 QELENICNSLQHKTYEFWNFSAN-KKYKSKVKVTWITKGDYKDNQGEVHIDLHNDVIEML 118 Query: 140 --IGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 N FT+++ ++ Y + L+E + + I+++ E++ + Sbjct: 119 TVFDKTNPFTKYQRQMIVKL-GCYGIILFELISSCLHQKNKTK-AYTIEYLREKFNCIDT 176 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 Y + +F+R L + +I TP+R++Y + KKGR T IVF+F ++ Sbjct: 177 YPVISEFKRNVLDKAIMDIEKHTPLRITYTQVKKGRVVTEIVFAFENLDD 226 >UniRef50_Q02V81 Replication initiator protein n=74 Tax=root RepID=Q02V81_LACLS Length = 443 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 96/251 (38%), Gaps = 20/251 (7%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 K +IV+ NDL + + + ++ L V I D D + + Sbjct: 20 KEIEKRKIVEHNDLITSVAKMDKTPLKIFELAVSCI---DTENLPKDNTIYLSKEELFTF 76 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 F ++ ++A+K + F+ E+AG ++S + + Sbjct: 77 FDVSDNGKHTRFKEAIKVMQKEA--FFEIREEAGKGFKFKSIVPIPYVEWTDYHDEVKIE 134 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLC----QYRKPDGSGIVS---- 182 + ++P+ I L+ FTQ+ LS+ E+ + Y++ LY+ L QY G Sbjct: 135 FHREIMPYLIELKKNFTQYALSDVMELNSKYSIILYKWLSMNYNQYEHYSAKGGRRVNQV 194 Query: 183 -------LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQT 235 + + + E Y+ M +F +R L + EIN T ++Y + KKGR Sbjct: 195 ESYRNPSITVKELREITDTIHEYKDMSNFTKRVLDNSLKEINHHTSFNVTYDKIKKGRSI 254 Query: 236 THIVFSFRDIT 246 IVF Sbjct: 255 DSIVFHIEKKP 265 >UniRef50_D2U1L9 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2U1L9_9ENTR Length = 212 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 83/208 (39%), Gaps = 10/208 (4%) Query: 45 QIRKSDGTLQEHDGICEIHVAKYAEIF-GLTSAEASKDIRQALKSFAGKEVVFYRPEEDA 103 I K + + + +I ++ F + A + +++A+ A + + Y + Sbjct: 2 CIGKINPIAENPERTFQITANEFYMSFPDMGRKHAERRLQEAIDRLAERWIRIYWKDNKE 61 Query: 104 GDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAM 163 K + G + + Y+IP+ L ++FT+ + ++ + Y++ Sbjct: 62 EIRWIQR------KAKYFTGEGKIEISFSDYIIPYLTQLHDQFTKIVVKNVSKLKSTYSI 115 Query: 164 RLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMR 223 R+YE L Q++ +KID L Y R ++ + EIN+++ + Sbjct: 116 RVYELLMQFKAIGD---RVIKIDDFRSMLGLDDKYSDFKILNRAVIKPSLKEINAKSDIN 172 Query: 224 LSYIEKKKGRQTTHIVFSFRDITSMTTG 251 +S K+GR+ + F F + + Sbjct: 173 VSIDLVKQGRKVVALHFHFEEKNKKQSS 200 >UniRef50_A2SMS3 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SMS3_METPP Length = 440 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 88/239 (36%), Gaps = 14/239 (5%) Query: 19 VQSNDLTEA--AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 ++ ++ A LS +++ + Q+ D EI ++ A++ G S Sbjct: 38 KKAVEIVHALPRQGLSLLSRKVGNCLLRQVVNVG---PRDDAWYEIGISPLAQMAGFDSK 94 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 + + ++ AL++ G + +G+E+ F P G+ +NP L+ Sbjct: 95 DFAH-LKSALRALMGLVFEWDVVTPVT-KRRGWEAASLFPNVKIPPGAGVVRFQVNPELL 152 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL-- 194 P + + ++ + ++ L+E ++ + + + + + Sbjct: 153 PLIVK-PEVYALIDMAVVRRFRRTASLALWEHCVRFERVGATS--EVPWQTLRDILLGQS 209 Query: 195 --PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 ++Y F+ + L + EINS + ++ GR + I F+ R T Sbjct: 210 ADSKTYNEFKYFKAKVLAPAIREINSESNHQVEMRMNYVGRFVSTIAFTIRPKAEATDS 268 >UniRef50_A8V5F5 Replication initiator protein (Fragment) n=2 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V5F5_9AQUI Length = 225 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 96/218 (44%), Gaps = 10/218 (4%) Query: 5 AVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHV 64 + K+ + NDL +A + LS ++ R++ + I+ D ++ +I V Sbjct: 17 EMKEVKEINKNAIATIHNDLIQARHKLSLEEIRLMDTIISFIQPEDKDFKK----YKIPV 72 Query: 65 AKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 A + ++FG + +++A++ K + + E ++ F + + Sbjct: 73 AVFKDLFGTQRKDIYDVVKRAVEGLLSKPIKIEKKNERGKRY--FKMFNFIRYGEYEEGA 130 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G + V I P P+ + L+ F++ + T + + YA+RLYE L QY +G Sbjct: 131 GCFYVSIAPEFKPYLLQLKEFFSKIPIKYTYVLNSRYAIRLYELLKQYEN---TGFRVDY 187 Query: 185 IDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTP 221 + + E + P Y R +F +R L+ V EIN +T Sbjct: 188 LPELREMLGVEPNEYIRFDNFEKRVLKQAVKEINEKTD 225 >UniRef50_Q3T4G0 RepA n=1 Tax=Capnocytophaga ochracea RepID=Q3T4G0_CAPOC Length = 372 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 93/245 (37%), Gaps = 25/245 (10%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEH-----------DGICEI 62 + ++QS LT A Y + +KR++Y ++ ++ D I Sbjct: 5 KNKEVLQSYILTTAKYDFTIYEKRIMYRQIEIEQELLLGQSIKPGVIIETNLWKDKKYTI 64 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 V + + +++A ++ K++++ P+ E FP + Sbjct: 65 PVNWL--LPNGEKDKNHAQVKKAFEALMSKKIIYETPD-------AIEGFPLIQRFKVDK 115 Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 + + ++ + F ++ L E + YAMR YE L + P ++ Sbjct: 116 KGETVTWQVPKEIVDVIVNFAKGFRKYELKTAMEFESVYAMRFYELLSGQKNP-----LT 170 Query: 183 LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 I+ + + +++ Y+ DF R ++ E+++++P Y K GR+ I F Sbjct: 171 YTIEQLKDMFKIQDKYKLTADFLRYVIEPAKKELDAKSPYSFEYKINKSGRKFHSITFIP 230 Query: 243 RDITS 247 + Sbjct: 231 KFQPQ 235 >UniRef50_B2JUN4 Initiator RepB protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JUN4_BURP8 Length = 433 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 88/241 (36%), Gaps = 13/241 (5%) Query: 8 NHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY 67 K + + + + LS ++++ + + + T + H + V Sbjct: 4 TLPKEVRTESVKKHVAAIHTSGELSLLERKLSNVLLLHSYDNLLTTRTH----RLPVRTL 59 Query: 68 AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLY 127 + G T +E ++ +R+AL+ A V F ++ + + P G+ Sbjct: 60 MLVLGWTESENTEKLREALRQLATTAVEFNVMDDG---RERWSVMPILSFAEI--RTGVC 114 Query: 128 SVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW 187 S + L + L ++ + +A+ LYE+ +++K +G + L + Sbjct: 115 SYRYDEALAEKLYDPS-IYATVNLGVQRKFSKSHALTLYENCLRFQKVGSTGWIELPV-- 171 Query: 188 IIERYQLPQSYQR-MPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 + + Q Y + +Q V EIN + + + ++ GR T + F R Sbjct: 172 LRKLLGATQEYYDDFRRLNSKVIQKAVKEINDVSDINVEVEYQRMGRSVTGVKFLIRQGA 231 Query: 247 S 247 Sbjct: 232 Q 232 >UniRef50_C5H432 Initiator RepB protein family n=1 Tax=Arcobacter butzleri RepID=C5H432_9PROT Length = 326 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 25/249 (10%) Query: 7 INHKKRKNSPRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 I K + + + NDL A YSLS D +++ + + IR D T QE I V+ Sbjct: 3 IVEVKDNKNCIVKKHNDLVNKARYSLSEDGIKLVSMLIAMIRTDDETFQE----YHIKVS 58 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 +A++ G S + + + +K + G + + Sbjct: 59 DFAKLKGSNSKNNYESVHKIIKELLSCPIKI-----------GNLQANFIASGEYKEGTA 107 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ-------YRKPDGS 178 I+ L P+ + L+ F ++ L + + + Y +RLYE + Q Y K S Sbjct: 108 TAVFEISQKLKPYLLELKKDFLEYDLKDILSLKSGYVIRLYEMIVQQWREYKHYNKNAKS 167 Query: 179 GIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 I+ + +++P SY R D +R + + +T + Y E K GR + Sbjct: 168 FTFDFDIEEMRTLFEIPDSY-RYNDVKR-IIDKAQQQFKEKTNITFDYEEYKIGRAVKRL 225 Query: 239 VFSFRDITS 247 + R+ Sbjct: 226 KITVRENNK 234 >UniRef50_Q46088 Replicase n=2 Tax=Bacteria RepID=Q46088_CAMHY Length = 337 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 106/250 (42%), Gaps = 18/250 (7%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 M +T + N N + QSN + A Y L+ +++++ L + Q+ D + G Sbjct: 1 MKKTEIKNI---ANRQIMAQSNKVITAKYELTEAEQKIILLAIAQV---DSIKDKKFGTY 54 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 +I + + + G +A +++ + + V + K ++ F W + Sbjct: 55 KITIPELEQKIGSKIKQA--QLKETCRRLMQRVVYI-------ENGKNWKMFHWISTAEY 105 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 I+ + PF + L+ FT+ L + Y +R Y+ Q + + Sbjct: 106 IDGENTIKFKISDEMKPFLLQLKGNFTKIELENALKFNGKYTLRFYQFCMQMQN-QATKK 164 Query: 181 VSLKIDWIIERYQLPQSY-QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK-GRQTTHI 238 + ++ + E QLP+S F+ + ++ +NEIN+++ ++ ++ KK G++ I Sbjct: 165 RTFELSKLYEILQLPESLTTSFARFKLKVIEPSINEINTKSDIKANWEISKKIGKKIVEI 224 Query: 239 VFSFRDITSM 248 +F+ + Sbjct: 225 ELNFKSKERL 234 >UniRef50_Q83Z35 RepB n=4 Tax=Helicobacter pylori RepID=Q83Z35_HELPY Length = 438 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 98/241 (40%), Gaps = 9/241 (3%) Query: 11 KRKNSPRIVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAK-YA 68 K+ I Q N A Y + ++ + Y + ++ + + E+ +++ Sbjct: 23 KKSQKYLITQDNRFIYAKYGDTTANELKFFYYVISKLNS---ISDKDFQLHEVPISEILG 79 Query: 69 EIFGLTSAEASKDIRQALKSFAGKEVV---FYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 E+ S + I+ +S + + + +E+ +E F + + + Sbjct: 80 EVLSHESEDNYTYIKNLCRSLSKRILEDESLVYNPVTKKEEEMFEVMAIFKRIQYLKRKA 139 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 + +N L P+ +GL FTQ L I + YA+R+Y+ L V L + Sbjct: 140 VICYQLNDCLKPYLLGLSKNFTQIPLQHILPIRSGYAIRIYQILLS-ELKQNRNEVDLYL 198 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 + + +P+SY DF+ L+ + EIN+ T + SY KK+ ++ T IVF Sbjct: 199 INLQDVLCVPKSYYAWKDFKNNVLEPSLKEINATTDILASYRTKKERQKITQIVFEICYK 258 Query: 246 T 246 Sbjct: 259 D 259 >UniRef50_B1BR22 Initiator RepB protein family n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BR22_CLOPE Length = 443 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 103/238 (43%), Gaps = 12/238 (5%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 K + I QSN L + YSLS + ++++ + ++ D +E E + ++I Sbjct: 4 KNCKNYIITQSNKLAYSKYSLSLNAQKLIMILAAHVQPDDEDFKE----IEFKAIELSKI 59 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 ++ +D+ K K V+F ++ +K + + + G + Sbjct: 60 LDISVDNIYRDLPNITKELVSKLVLFKSTDD--FKDKNFIQGTFLSTAEY--RDGKVLLE 115 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 +P + P+ + L+ F++F+L T + Y+MR Y+ ++ G +++ + E Sbjct: 116 FSPKVKPYLLALKRCFSKFKLESTLNFKSKYSMRFYQL---FKANYIKGEFIIEVSELRE 172 Query: 191 RYQLP-QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 L +SY + F+ R L V V EIN+ T + +S+ K R+T + F Sbjct: 173 LLNLTQKSYLKYYTFKNRVLNVAVEEINTHTDLNVSFEPIKFKRETVKLKFYVNKKEK 230 >UniRef50_UPI00004A2E9C replication protein n=1 Tax=Moraxella bovis Epp63 RepID=UPI00004A2E9C Length = 533 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 100/251 (39%), Gaps = 11/251 (4%) Query: 3 ETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 +T + I+ N L A L+ +++R++ +RK ++ + + Sbjct: 107 KTKKREMTYANSEDLIIIQNRLLHAISHLTLNERRLILFLSPIVRKQ-VEKNPNNRVFYV 165 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 +V + +G+ S + ++ + S K F+ ++ +KG W + + Sbjct: 166 YVQDFVNEYGIKSKKYYGELEKIADSIVEKAFFFWYKTQNGKAKKGV---SWVSECDYIE 222 Query: 123 SRGLYSVHINPYLIPFFIGLQ----NRFTQFRLSETKEITNPYAMRLYES-LCQYRKPDG 177 + V ++ +I N +TQ++ + Y + + E L + Sbjct: 223 NEAKIKVKLDDTVIEMLTVFDKTTGNFWTQYQKEWIINL-GTYGIIMLELVLSSFDNSFE 281 Query: 178 SGIV-SLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTT 236 I+ + E++ ++Y R DF+ ++ + EI+ TP+R+SY K GR Sbjct: 282 KDKKGKYSIEHLREKFDCIETYPRFSDFKLYVIEKSIKEIHKHTPIRISYQVHKFGRSVQ 341 Query: 237 HIVFSFRDITS 247 + FS+ D + Sbjct: 342 GVSFSYIDTSE 352 >UniRef50_P22308 Replication initiation protein n=12 Tax=root RepID=REPY_ECOLX Length = 316 Score = 132 bits (333), Expect = 8e-30, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 93/232 (40%), Gaps = 12/232 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + ++N+L + Y L+ + +++ V + + + +YA++ + Sbjct: 2 SELVVFKANELAISRYDLTEHETKLILCCVALLNPTIENPTRKERTVSFTYNQYAQMMNI 61 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + A + +A + + V P KG+E F W S + + + Sbjct: 62 SRENAYGVLAKATRELMTRTVEIRNP-----LVKGFEIFQWTNYAKFSSEK--LELVFSE 114 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY--RKPDGSGIVSLKIDWIIER 191 ++P+ L+ F ++ L K N Y+MR+YE L + +K + + +D Sbjct: 115 EILPYLFQLKK-FIKYNLEHVKSFENKYSMRIYEWLLKELTQKKTHKANIEISLDEFKFM 173 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 L +Y + L+ ++N+ + M+L K+GR T ++F Sbjct: 174 LMLENNYHEFKRLNQWVLKPISKDLNTYSNMKLVVD--KRGRPTDTLIFQVE 223 >UniRef50_C3S7V4 Rep n=1 Tax=Streptococcus parasanguinis RepID=C3S7V4_STRPA Length = 270 Score = 132 bits (333), Expect = 9e-30, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 84/252 (33%), Gaps = 8/252 (3%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 + + + + +VQ+NDL +A +L + ++L + K + Sbjct: 6 KSSKIYEELASRQNYLVVQANDLAKAFGNLKAFEHKVLDYCFSSVTKDSRVGD----VFT 61 Query: 62 IHVAKYAEIFGLTSA-EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 +H + FGLT + + I +A Y PE + F + Sbjct: 62 VHSLDIMKHFGLTKNGQNYRRIAEAFSRLNENTA-LYIPETLPDGRRSIIMTQLFSRIRF 120 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG-SG 179 GL + P L+ + F L E + + Y++ L + YR + Sbjct: 121 I-EDGLVEFKFSEDAGPLVFELKRNYYSFHLDELGNVKSKYSLILMKLWEAYRLGNREYT 179 Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 + ++ + + + F+R L V E+ + + KKGR+ Sbjct: 180 TIKGSLEEWQDWFLGEEKSWPAGLFKRNALMVACEELEMKFNADIDLTTVKKGRKVIGYE 239 Query: 240 FSFRDITSMTTG 251 RD TT Sbjct: 240 MVIRDRRMPTTA 251 >UniRef50_Q9X3R7 Replicase n=2 Tax=Riemerella anatipestifer RepID=Q9X3R7_RIEAN Length = 309 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 92/240 (38%), Gaps = 24/240 (10%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 ++ I Q N +T Y S +LY+ + + K H EI Sbjct: 7 KEEDKLIYQHNVITSGRYDYSACMLDILYMVLSGLEKDKLEYNIHVQDIEII-------- 58 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 K +R++ ++ + PE +E F + + G ++V + Sbjct: 59 -TGRKWNLKQLRESTENIGSRMFEIETPE-------SFEQLWLFSRVKYLKGTGSFTVKL 110 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 N +P+F L+N FT +L ++ YA RLY CQ+R +I+ + + Sbjct: 111 NDEAMPYFFDLKNNFTSMQLKSVLNCSSKYAKRLYAIACQWRSVGIK---RFEIEELKKM 167 Query: 192 YQLPQS-----YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 L ++R+ DF++ L V +I+ T + L + KK+GR I + Sbjct: 168 LGLIDKKGNEQFERISDFKKFVLDVAREQISENTDIELDFELKKRGRSFHWITLHINNQK 227 >UniRef50_A6TSD9 Initiator RepB protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSD9_ALKMQ Length = 240 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 24/248 (9%) Query: 13 KNSPRIVQSNDL-------TEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 +SNDL + + ++ + IRK D EI ++ Sbjct: 6 TEEDEFKKSNDLSEWMATKILLKNPFTVMELKLFTCVLSMIRKDDDLK-----EYEISIS 60 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 ++ ++ G TS I+QA + K V R + G Sbjct: 61 QFMKMPGTTSKNVYDQIQQAGERLMQKIVTIQRGD-------RRIRVALMSSVETKMGGG 113 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 V +P + P I LQ ++T++ L + + + +RLYE Q G +L + Sbjct: 114 TVKVSFDPKIKPELITLQEKYTEYTLGNIMALRSTHTIRLYELFKQCLPD---GERTLTV 170 Query: 186 DWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYI-EKKKGRQTTHIVFSFR 243 D I + P SY+R D + + + + EI T + ++ ++GR+ F Sbjct: 171 DEIKSHLTIAPDSYKRTNDLKEKVVDKSLEEIGELTDIVVNIKHANREGRKIIGWTFVIG 230 Query: 244 DITSMTTG 251 + Sbjct: 231 SNKNADNS 238 >UniRef50_C3RRC7 Putative uncharacterized protein n=1 Tax=Mollicutes bacterium D7 RepID=C3RRC7_9MOLU Length = 256 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 85/237 (35%), Gaps = 13/237 (5%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 ++ +I QSN+L A + + Q R+ + Q + + + + E G Sbjct: 2 QSDLKIKQSNNLILATHKMDIQQMRLFFYACSQYKGDLDIKISLEEVNRV----LTENTG 57 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + IR+ + + +V E+ + Sbjct: 58 NRGGNQRERIRETIPTLMRNAIVHIEDEKGEEWCSALRRSRL-------NKDDTVIFTFD 110 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESL-CQYRKPDGSGIVSLKIDWIIER 191 + L +T LS +T+ Y++RLYE + + S I+ + Sbjct: 111 KSIQKELEEL-RGYTWMYLSNLTGMTSTYSVRLYEFFAMRLGNANKSSKFDYDINKLRLY 169 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 + Y+ DF +R L EIN ++ + +SY + K GR T I+F+F+ T Sbjct: 170 LDCTKKYKDFRDFNKRVLAQAEKEINEKSNIHMSYKKIKTGRSITSILFTFKWKTKA 226 >UniRef50_D1PMT8 Putative replication initiator protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMT8_9FIRM Length = 575 Score = 131 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 18/231 (7%) Query: 29 YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE--ASKDIRQAL 86 Y+L+ Q++++ I+ SD L E+ + ++ ++ G+ +++ + Sbjct: 2 YNLTLSQQKLMLHIFAMIKPSDTEL----PRYEMSIYEFLKLCGVDPHNGSMYNQVKKNI 57 Query: 87 KSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRF 146 A V + R E F W G ++ ++P+L P I L+ + Sbjct: 58 SDIASTPVQWIRIEGTQK----ITMFRWIDGSTIDKRTGKITLTLSPFLKPHLIQLKEFY 113 Query: 147 TQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS-----LKIDWIIERYQLPQSYQRM 201 T ++ + + Y++R+YE Y+ ID + ++ + Sbjct: 114 TTMDVTYIMLMKSQYSVRIYELCKSYQNLYLQNKAKGKPLVWDIDNLRKQVDCSAT--NW 171 Query: 202 PDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR-QTTHIVFSFRDITSMTTG 251 RR L +EIN T + Y KK + + I + Sbjct: 172 AHIRRTVLDKAKSEINGHTDILFDYAVYKKAKSKVVEISVQIEQVEQTEAA 222 >UniRef50_A1BC50 Initiator RepB protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BC50_PARDP Length = 340 Score = 131 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 86/254 (33%), Gaps = 15/254 (5%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAA--YSLSRDQKRMLYLFVDQIRKSDGTLQEHDG 58 MAE+A+ + R N+ +++ +L + L+ + +R+ ++ ++ H Sbjct: 1 MAESAIRTVEARPNADSLIKPGELVDLIEVTPLTLNDRRIYNQLLENAWEAIDKPVTHV- 59 Query: 59 ICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKR 118 A+ S ++ + ++L+ V + + + Sbjct: 60 --------IAKSALRGSHNSNDRVGESLERLMSAIVKVAVIWDGEPAIERVQLLG--GNL 109 Query: 119 AHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 S GL I L F + + +++ YA+ LYE + + Sbjct: 110 ESGRSDGLLEYEIPARLRKIIRN-SQVFARLQREVMFALSSKYALTLYEMVQKRGNLRWK 168 Query: 179 GIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 ++ + +P+ + + R + V E+N+ + + K GR TH Sbjct: 169 ASERFTLEALRGIMGVPKGKLSSWSNLKLRAIDPAVAEVNALSDYMVEISPIKTGRAVTH 228 Query: 238 IVFSFRDITSMTTG 251 + + +G Sbjct: 229 VEMRWWRKDGDASG 242 >UniRef50_Q8ETT4 Replication protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8ETT4_OCEIH Length = 279 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 105/250 (42%), Gaps = 20/250 (8%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYS--LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIH 63 + KKR N ++ QSNDL EA Y L+ + +++ V +I KS Sbjct: 1 MAEKKKRDNKVQVCQSNDLIEAIYEEGLTATEHKIIRYAVAKINKSPDQF----PNVSFT 56 Query: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 V ++ GL+ +++ + K++ E D G FPWF + + Sbjct: 57 VLEFINAAGLSGNSYHGKVKKIVGELKRKQIRIKPREHDWG-------FPWFKEIIY--K 107 Query: 124 RGLYSVHINPYLIPFFIGLQNR--FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 G+ + N + + I L + +T++ + + +PY +RL+E L QY G Sbjct: 108 NGMVHITFNDLIKSYLIYLSEQEKYTKYAFATIGHMQSPYTIRLFELLQQYAMI---GHR 164 Query: 182 SLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 +K++ + E + Y+ F+ R LQ E+++ + ++ E K R+ I F Sbjct: 165 KIKLEKLKELLGVKGKYKEYGHFKSRILQSVKKELDNINVLTFTFEEIKMVRRVDEIYFD 224 Query: 242 FRDITSMTTG 251 + + T Sbjct: 225 IKINDDLNTA 234 >UniRef50_C0EYN5 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EYN5_9FIRM Length = 267 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 91/242 (37%), Gaps = 17/242 (7%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAY--SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIH 63 + K S R V SN A +S +++LY+ + Q +K+D E EI Sbjct: 1 MKRELNTKESVRTVTSNQFITACGLEGISLKARKLLYIAISQSKKTDTEFYE----YEIG 56 Query: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 V ++A++ G+ ++ V + K + + F + Sbjct: 57 VKEFADLMGIAPTHVYQEADVVTDELMRGFVKIQE-----KNNKSWRKYQLFDMCQY-TE 110 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG-----S 178 G I+ + F + L F+Q L + ++ +PY+M ++ + K + Sbjct: 111 NGSIRFEISKQMTDFLLNLTGNFSQPLLYDFLKMRSPYSMAIWHLMQMKMKSKKLGVTAT 170 Query: 179 GIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 + + + + +++ +F++R L + EI ++++Y K GR Sbjct: 171 TSFDISLAELRKVTGCIDKLKQVGEFKKRVLDKALREIFDCAGVKITYQNIKVGRTVEGF 230 Query: 239 VF 240 F Sbjct: 231 RF 232 >UniRef50_C8Q107 Replication protein n=2 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q107_9GAMM Length = 455 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 101/239 (42%), Gaps = 7/239 (2%) Query: 8 NHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY 67 K IV N L A L++D++R + +RK+ + H + + Sbjct: 125 KISKIYGENWIVLQNRLLNAISDLNQDERRFVIFLSPLVRKA-VDINPHQRNFTVVAKDF 183 Query: 68 AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLY 127 A+ + + + +++ KS GK FY A + + W + G+ Sbjct: 184 AKEYDIAEKHVYEKLKKISKSIHGKV--FYYWNFRANKKANLKGVSWIGTAEYKDREGMV 241 Query: 128 SVHINPYLIPFF--IGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 V + +I N FT++ + + + + L+E + S +I Sbjct: 242 EVSLLDEVIQMLTVFDKSNPFTKYERKHIANLGS-HGIILFELISSCMHQLFKSK-SYEI 299 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 +++ E++ +Y + +F+R + + +I S TP++++Y +KK G++ T ++FSF D Sbjct: 300 EYLREKFNCRDTYLPIAEFKRNVIDKAIKDIESNTPLKINYEQKKTGKKVTELLFSFYD 358 >UniRef50_UPI000197AD3E hypothetical protein BACCOPRO_01779 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197AD3E Length = 327 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 91/241 (37%), Gaps = 23/241 (9%) Query: 10 KKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAK--- 66 + + + QS T A Y S +KR++Y ++ + ++ D + +I Sbjct: 2 SENLPNKAVFQSYIWTCAKYDFSPYEKRIIYRLIEFAQHWLEGVKIKDHMHKIEPTDCGV 61 Query: 67 -----YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 A+I + + A S + K + D++ + Sbjct: 62 NITMPVADILRDETDNNYAKAKAAFTSLSKKGAEY-------EDDEIWFYTAIIEHPKIK 114 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 G+ + H+ + + F ++ L + + YAMR YE + + + Sbjct: 115 KGTGVATFHVYEPVWRAALDFTKGFKKYELVTAMKFKSVYAMRFYELMS-----GQTTPL 169 Query: 182 SLKI---DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHI 238 + + D + ER+ L Y+R+ DFRR+ + V E++ +P E+K+G++ Sbjct: 170 FVPLEGSDGLRERFNLQGKYERVNDFRRKVIDVAKKELDKFSPYSFVAKEEKEGKKVIGW 229 Query: 239 V 239 Sbjct: 230 T 230 >UniRef50_B5A7F5 RepA n=2 Tax=Bacteroides RepID=B5A7F5_BACUN Length = 325 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 103/252 (40%), Gaps = 21/252 (8%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIR----KSDGTLQEHDGICE 61 + K++ + Q N LT A Y +KR LY + IR +++ ++ Sbjct: 1 MEKKDKKQRDIVLSQDNALTTARYKFDLIEKRALYSIIRNIRAQYIENENGRRDLFDDLI 60 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 I + + E+ ++I ALK +++ +EK + S + H Sbjct: 61 ITIHE-EELKKCGDNTKMQNIYDALKRLRNRDIEIN-------NEKMWLSIGFVNYVKHI 112 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 ++ + V ++ ++P+++ L FT + ++ + + ++ R YE CQYR G Sbjct: 113 KNKSYFEVQVSKEVLPYYVELAQNFTSYSMTVAIALKSTFSQRFYELCCQYRNA---GFF 169 Query: 182 SLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSR-----TPMRLSYIEKK-KGRQT 235 ++ + E + L + Y+R DF+RR L E+ + + K KG++ Sbjct: 170 FYTVEKLREMFMLEKKYKRGCDFKRRVLDDPQKELRELYNAGQCDLYFEFEPKSYKGKEV 229 Query: 236 THIVFSFRDITS 247 T F + Sbjct: 230 TEYKFYVYTRQT 241 >UniRef50_B6YS87 Replication protein A n=4 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YS87_AZOPC Length = 532 Score = 130 bits (327), Expect = 4e-29, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 101/259 (38%), Gaps = 33/259 (12%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 + I + ++ ++QS LT A Y LS +KR+LY V+ + + D Sbjct: 11 KKIETIVLNRTLSNKDVIQSYILTTARYDLSVYEKRILYGIVECFQAELTGKKI-DKDFS 69 Query: 62 IHVAKYAEIF----------GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYES 111 I + ++ I++AL S K++ +++ +E+ Sbjct: 70 ISPEMFGDVLIEMSFSLLLVDGDDKNHY-QIKKALYSLLDKKI-------LRDNDREWEA 121 Query: 112 FPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQ 171 F +K + + ++ + + + ++ L + Y+MR YE L Sbjct: 122 FTLIVKPKINKYDRIIRFRLHEEVYEALLDFSKGYRKYELKTAMAFNSIYSMRFYELLSG 181 Query: 172 YRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK-- 229 +KP ++ I+ + ++L + Y+ + FR R + E++ ++P +Y + Sbjct: 182 QKKP-----LTYSIEDLKAMFRLEKKYKDVGVFRSRVIDPAQRELDLKSPYSFTYQLEHE 236 Query: 230 ------KKGR-QTTHIVFS 241 K GR + I F+ Sbjct: 237 KERTNPKGGRKKVVAITFT 255 >UniRef50_D2MK96 Plasmid replication initiation protein n=6 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK96_9BACT Length = 433 Score = 130 bits (327), Expect = 4e-29, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 88/238 (36%), Gaps = 13/238 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 N +++++ + ++ Q+R + + H + VA+ A G Sbjct: 5 NINEVIKASPAIQVQGKMTHLQRRAWNVLLANAYNELPDKDIHS----VGVAELASKLGY 60 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 S + +++ L++ +V + ++D ++ G+ + + G+ + P Sbjct: 61 ESNDL-DYLKETLEALGSCQVKWNLLDKDKKEKWGFANLL----ASADIKDGICTYAFAP 115 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG--IVSLKIDWIIER 191 +L P +T+ L + + YA+ L+E Y D + + E Sbjct: 116 HLRPKLHN-PRIYTKLNLRLQNQFKSQYALILWEVCFDYFDTDRGTGETPFIPLGTFKEL 174 Query: 192 YQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 L ++ Y R ++ + EIN+ T + K+ GR+ + F + + Sbjct: 175 MGLDETDYPVFKVLSRDVIKSALKEINALTDYHIEVEHKRLGRRVAELKFHITRVKQL 232 >UniRef50_A0R7R9 Initiator RepB protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7R9_PELPD Length = 440 Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 82/240 (34%), Gaps = 13/240 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKS-DGTLQEHDGICEIHVAKYAEIFG 72 + + N + ++ + ++++ + R + DG + + Sbjct: 37 EDYILKKHNAIIHRTHASTPTEEKVFSALLMVARAQMKSGIVPPDGKFQTSIKFLRNFTR 96 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + ++ AL S + + ED E + SF + + G + Sbjct: 97 TRATHNH-LLKNALTSLQERPWQYDMFHEDKFQE--WRSFVPISEARIN-RFGCVTFFFA 152 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P + +TQ L + + + Y++ LYE + ++ + Sbjct: 153 PTINEALNNPS-IYTQIDLKIIRGLKSLYSIALYELGVTHIDE----HREFSLEEFRDYM 207 Query: 193 QLP-QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQ--TTHIVFSFRDITSMT 249 L Y D RR ++ VNE+N +T +R+ K+G + T F+F I + Sbjct: 208 GLKVGEYSAPTDLRRHVVEPAVNEVNEKTDVRVEVRLLKRGNRGALTGFDFTFSRIEEVE 267 >UniRef50_Q97TD7 Replication protein, repA n=1 Tax=Clostridium acetobutylicum RepID=Q97TD7_CLOAB Length = 336 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 14/226 (6%) Query: 23 DLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDI 82 L EA Y+L+ + ++ + ++ I+ + +I + KY +F S +DI Sbjct: 12 KLIEARYNLTSKENDIIDMILNTIKDDGK------HVYKIDIEKYKNLFVSGSTNVYRDI 65 Query: 83 RQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGL 142 ++A K K F ++ AG E F WF ++ G I L + + Sbjct: 66 KKATKDLFTKHNKFIIKDKTAGKE---FYFTWFSMLNYNDKDGSIYFEIGETLKAALLEM 122 Query: 143 QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMP 202 + R + L T + Y+ R+Y L + +G ID + + P SY+ Sbjct: 123 KKR-IYYELQYTLNFRSIYSKRIYYMLKSF---SDTGWRIDNIDELQYKLNCPPSYKNYA 178 Query: 203 DFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 F+ + L EIN + + + K G++ T I F +D ++ Sbjct: 179 VFKNKVLVQAQKEING-SDISFDFTPIKTGKKVTGIKFLIKDSNTV 223 >UniRef50_P18351 Uncharacterized 27.6 kDa protein n=19 Tax=root RepID=YPC1_ECOLX Length = 239 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 118/245 (48%), Gaps = 19/245 (7%) Query: 9 HKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFV-------DQIRKSDGTLQEHDGICE 61 K ++ QSN+LTEAAY LS KR+L+L + D D + Sbjct: 2 DKLLNKKIKVKQSNELTEAAYYLSLKAKRVLWLCLMQTYFTASVSEDDDEMAVLGDSTFK 61 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 + VA Y +IF ++ +A KD+++ + + V+FY E + PW + Sbjct: 62 VKVADYQQIFQVSRNQAIKDVKEGVFELSRSAVIFYPKEGSFD----CVARPWLTEAGSR 117 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 +RG++ + N L+ + GL N+FT + L + + NP +RLYESL Q++ SG+ Sbjct: 118 SARGIWEIEFNHKLLRYIYGLTNQFTTYSLRDCGSLRNPRTIRLYESLAQFK---SSGLW 174 Query: 182 SLKIDWIIERYQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 W+ +R+ LP+S + + + +R FL + +IN +TP+ Y G+ +F Sbjct: 175 VTTHAWLNDRFLLPESQQKNLAELKRSFLDPALKQINEKTPLLAKYSIDDSGK----FLF 230 Query: 241 SFRDI 245 S D Sbjct: 231 SIIDK 235 >UniRef50_C6BQP5 Replication protein n=3 Tax=Ralstonia RepID=C6BQP5_RALP1 Length = 435 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 71/219 (32%), Gaps = 12/219 (5%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 LS Q+R+ + + +E + ++ + + LT+ + I++ KS Sbjct: 41 LSLQQRRIFNALIKNAIEQRLAGRETNNTFQVSIPQMMAALDLTTKDN-AYIKETAKSLM 99 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 V + + D + + S P + + R+ Sbjct: 100 RTVVDWDQLNSDG--TSTWTGSTLIAGAKIVG--SVLSYSFAPQISEELLD-PQRYAMID 154 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY----QLPQSYQRMPDFRR 206 + K Y++ L+E+ ++ + + + + + Y+ F+R Sbjct: 155 MRIAKLFRRSYSLALWENTVRFERIGLTA--RIPLATFRNLILGREESETKYKEYKIFKR 212 Query: 207 RFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 L + EIN + + IE K GR I F Sbjct: 213 AVLTPSIAEINDVSDHEIELIEHKVGRTVGEIQFKISRK 251 >UniRef50_B6D407 RepA n=1 Tax=Capnocytophaga canimorsus RepID=B6D407_9FLAO Length = 357 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 104/238 (43%), Gaps = 27/238 (11%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEH-----------DGICEIH 63 + ++QS LT A Y + +KR+LY V+ +++ + + D ++ Sbjct: 5 NKDLIQSYILTTAKYDYTAYEKRILYRVVELMQELTEEKKLNQKYSVQTNLFGDVDIQMP 64 Query: 64 VAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 V+ + + + ++ALKS K++ + D K ++ F + Sbjct: 65 VSSFLKDEN---DQNYGIAKKALKSLNSKQIEY-------EDNKVWKLFNLIERPVID-K 113 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 +G + ++P + F+ F ++ L + + YAMR YE + KP ++ Sbjct: 114 KGYVTFRLHPIIASVFLDFSKGFRKYELKTAMQFESVYAMRFYELMSGQEKP-----LTY 168 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 ID + +++L YQR+ DF R+ + V E++ ++P Y K+G++ I F Sbjct: 169 LIDDLKNKFKLENKYQRINDFFRKVIDVAKRELDKKSPYSFEYKINKQGKKFHSITFY 226 >UniRef50_D2QW12 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QW12_9SPHI Length = 320 Score = 126 bits (316), Expect = 7e-28, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 90/247 (36%), Gaps = 26/247 (10%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + ++ N L A +LS+ Q+ + Y+ QI+ + I EI + E Sbjct: 3 KVKPTMVLFENSLNRIAVNLSKLQRNLFYMVCSQIQPD----HTAETIYEISAIELMERT 58 Query: 72 GLTSAEASKDIRQALKSFAG-KEVVF--YRPEEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 G +RQ KE R +++ K F + G Sbjct: 59 GDKIN--YARLRQQTLQLIHPKEFEMPSNRVDKEGKPRKNVLQTGLFASALYLEGEGTVQ 116 Query: 129 VHINPYLIPFFIGLQN-----RFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 + I+ ++ PF + F+Q + + + Y +Y+ L Q+R G + Sbjct: 117 LTISAHVRPFILNFSEKLKGGNFSQLDVDLVLALRSKYGQAMYQQLTQWRFHADKGHM-Y 175 Query: 184 KIDWIIERYQLP-----QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK---KKGR-- 233 +D + + Y + +F + L+ ++ +T ++ +Y ++GR Sbjct: 176 PLDELKTLLGVMNKDGFDKYSKWGEFDAKVLKPAKRDL-EKTDLQFTYEPMPAPRRGRGH 234 Query: 234 QTTHIVF 240 + TH+ F Sbjct: 235 KVTHVKF 241 >UniRef50_B6J9Q7 Plasmid replication initiation protein n=12 Tax=Legionellales RepID=B6J9Q7_COXB1 Length = 438 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 88/246 (35%), Gaps = 11/246 (4%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 + E + + + + + +L+ Q+++ + H Sbjct: 5 LMEKRMNLAVATDKRVELKKHVNAIHCSNNLTLVQRKLFNALLFNAYPEL----PHKPKF 60 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 +I V ++ G S + ++ AL + + G EK +++ Sbjct: 61 QISVKDLCKLIGYNSND-YGKLKMALLGLITTAIEWNLINCGTGKEKNWKASSILSAAQ- 118 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + G+ + + + + + + + + Y + LYE+ +Y++ + Sbjct: 119 -LAEGVCTYEYSHIMKELLFQ-PEIYGRIDVKTMSKFKSSYGLALYENCIRYQRLSQTPW 176 Query: 181 VSLKIDWIIERYQ-LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 +D + L Y DF++R L + VNE+N+ + +++ +++ ++ T I Sbjct: 177 --FPLDVFRKLMGVLGGKYTSFKDFKKRVLNIAVNEVNNLSQIQVLPEIERQNQKVTKIR 234 Query: 240 FSFRDI 245 F Sbjct: 235 FKLNKK 240 >UniRef50_O68836 RepA n=3 Tax=Francisella RepID=O68836_FRATU Length = 339 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 56/259 (21%), Positives = 107/259 (41%), Gaps = 30/259 (11%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 M E +N K I SN L YSL+++++ +++L +++ D Sbjct: 1 MKEVKNVNAGKE-----IAMSNTLVAGKYSLTKEEQNLIFLVASMVKREDKEFHR----Y 51 Query: 61 EIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH 120 +I ++ + G+ ++Q + S K V +++ + WF Sbjct: 52 KISLSDLEKATGVKHNRV--RLKQLMHSIMSKPVWL--------NKEQTKIANWFAYIEA 101 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 P + L+P I LQ FT+ + Y+ RLY L + + +G Sbjct: 102 DPKSSALICEFHWSLMPHMIQLQEYFTKAERQLLFSFKSKYSSRLYLLLKS-KLGEQAGY 160 Query: 181 VSL-----KIDWIIERYQLPQSYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEK----K 230 ++ +D +I + LP+SY R +F+ +FL + EIN + + ++Y +K K Sbjct: 161 ANIVDCVLYVDDMINDFDLPKSYSNRYSNFKNKFLLPALEEINQLSDIFVTYDDKDHHRK 220 Query: 231 KGRQTTHIVFSFRDITSMT 249 GR+ T+I F+ + Sbjct: 221 HGRKITNIKFTVSKVAETE 239 >UniRef50_Q6R586 Replication protein A n=1 Tax=Ornithobacterium rhinotracheale RepID=Q6R586_9FLAO Length = 325 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 89/241 (36%), Gaps = 23/241 (9%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIH-------V 64 + N+ ++QS +T A Y + ++KR+LY ++ ++K L+ ++ Sbjct: 2 KINNKDLIQSYVITTARYDFNVNEKRVLYRIIEHLQKYTTGLKLNEKYLINKDLFGDYLF 61 Query: 65 AKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH---- 120 F + +A ++ A K+ F D+ + Sbjct: 62 QMDLNTFLIDNANHYDRVKDAFLRLNDKKFEFQ-------DDDSWSIIRIIESPEIVGLS 114 Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + + ++ + F+ + ++ + E + Y+MR YE Sbjct: 115 TQGNSIVRFRLHKRIFDAFLDFSKGYRKYEIKVAMEFKSEYSMRFYELFS-----GKKEP 169 Query: 181 VSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVF 240 + I+ + + +++ YQ+ DF +R + E+ + P Y K GR+ THI F Sbjct: 170 IIYDIEELKKMFKIDGKYQKSSDFIKRVIDTAQKELTEKAPYSFKYETIKTGRRFTHIKF 229 Query: 241 S 241 Sbjct: 230 K 230 >UniRef50_A0R7S0 Initiator RepB protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7S0_PELPD Length = 399 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 94/230 (40%), Gaps = 11/230 (4%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 +S + + + +T+ + +S Q++ L + R+ + +++ K I G Sbjct: 17 DSSYELKKHSAVTQISNRISLMQRKSYNLLLYFAREQ-ALKNPDLEMYSVNINKLRSIGG 75 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + K IR++L+ V +D + G + + + + + Sbjct: 76 VLIKDT-KHIRESLRELMTVVVDHNILGKDKQGDWG----AFVLLPEVNVKNSEITFALP 130 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 P + + + + L+ T+ +++ YA+ LYE Y I + + + Sbjct: 131 PSIKNALLN-PRMYARINLAITRGLSSKYALALYEMARDYIAV---TIPRMTLKTFRKLM 186 Query: 193 QLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 + S Y PD RRR ++ + EIN++T +R+ K GR+ I F+ Sbjct: 187 GVEDSLYVNFPDLRRRVIEPAMKEINTKTDLRIEIEYIKDGRKILGIQFT 236 >UniRef50_Q2T2N9 Plasmid replication protein, putative n=76 Tax=Burkholderia RepID=Q2T2N9_BURTA Length = 484 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 23/233 (9%), Positives = 73/233 (31%), Gaps = 17/233 (7%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 ++ +++ + + +++D + + + + S + +++ L+ Sbjct: 61 KITLLTRKLFNVLLAVAQQADDSGDTYRALL----SDIVANSAFDSNDT-ALVKEHLRRM 115 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG----LYSVHINPYLIPFFIGLQNR 145 +V + + + P + + + Sbjct: 116 VSVQVEWSTGTSSQKPGRKWGISTLIADAEILEDPATRRVWVEFSFAPKIKKKLLDPV-Q 174 Query: 146 FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY-QLPQS------Y 198 + + L ++ + + LYE +Y + +W P + Sbjct: 175 YARLSLQFQSQLRSSAGLALYEICVRYLTNPSHLTMREPWEWWRPILSGTPDTEAGDEAK 234 Query: 199 QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 + F+R +L+ + E+N+ T + + +E ++GR+ I F + Sbjct: 235 REYKYFKRDYLRPAIAEVNAVTNIFVELVEHREGRRVAEIQFRVSERKQPMLA 287 >UniRef50_B5TTF0 Putative uncharacterized protein rep n=3 Tax=environmental samples RepID=B5TTF0_9BACT Length = 401 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 99/264 (37%), Gaps = 21/264 (7%) Query: 3 ETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKS---DGTLQEHDGI 59 E ++ + K + +V ND A YS+ + ++++Y + +RK+ + T HD Sbjct: 11 EDYTQSNTRAKLTDLVVTRNDFPTARYSIDLNLEKLMYCAMIIVRKNELQNKTSITHDDF 70 Query: 60 CEIHVAKYAEIFG-------LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYE-- 110 + + E+ LT+ + + R A + F P D + E Sbjct: 71 IYVSSENFGELTSPMARKEVLTATDKREIQRNAETALKRIYTKFDNPTMLVKDGESDEPA 130 Query: 111 SFPWFIKRAHSPSRGLYSVHINPYLIPFFIGL-------QNRFTQFRLSETKEITNPYAM 163 P + + V +F L F+ L + Y++ Sbjct: 131 KVPMMTYCHYDKATKCIKVRFAKEFFEYFYDLVKKVDEKTKSFSSHELKHIILFNSSYSL 190 Query: 164 RLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMR 223 RLY L Y + V++ ++ + + Y+ + +F+ R L V +EIN + + Sbjct: 191 RLYRILMSYM--WRTSEVTIDLEELRWMLECEDKYKELANFKSRVLNVAQDEINELSNIN 248 Query: 224 LSYIEKKKGRQTTHIVFSFRDITS 247 +S+ K G++ I F F T Sbjct: 249 VSFENVKNGKEVVAIKFIFNLKTE 272 >UniRef50_Q93NB4 RepB n=11 Tax=Lactobacillales RepID=Q93NB4_9LACT Length = 275 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 98/247 (39%), Gaps = 16/247 (6%) Query: 9 HKKRKNSPRIVQSNDLT-EAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY 67 +++ +V+SNDL +A + L+ +Q +++ + +I+ D +E E + + Sbjct: 19 KYEQQQYYYVVESNDLISKAKHDLTTNQLKIIDFLISKIKPDDKDFEE----LETSMYEL 74 Query: 68 AEIFGLTSA-EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 + + + I L KEV Y E + W + G Sbjct: 75 TNVLEIKRSGRTYNQIANTLDDLRKKEVTIYNQE-----RESIVRTGWVSSAEYF-KNGK 128 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL--K 184 + + L P+ + L ++Q+ L +T ++ + YA+ LY+ + + + +G I L Sbjct: 129 VILSFDKKLAPYLLDLSKNYSQYLLIDTVKLKSKYAILLYKLMREADRDNGKSITILQGT 188 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRT-PMRLSYIEKKKGRQTTHIVFSFR 243 + + P++Y + L+ + EIN + M L ++ + GR+ + Sbjct: 189 PEEFKDWLGAPKNY-NYGRLKENVLKKAIEEINLKIDDMNLEILQGRYGRKVVQVEIHNN 247 Query: 244 DITSMTT 250 T Sbjct: 248 WTVQRAT 254 >UniRef50_C7UIY7 Initiator Replication protein n=9 Tax=Lactobacillales RepID=C7UIY7_ENTFA Length = 242 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 14/243 (5%) Query: 11 KRKNSPRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAE 69 K+ + N+L + + + + +++ + E Sbjct: 2 KKDTELTVKYRNELNMITLKKFNAKEMDLFFALCARMKDKGLN------NIVFSFEELKE 55 Query: 70 IFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSV 129 + A K L S K + +E D+ + F F + + V Sbjct: 56 LSDYR-TTAIKAFTDDLDSLYSKMLQLTYRDE-YDDDGSFRRFVLFTSFDVNVKKQTVEV 113 Query: 130 HINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWII 189 INP L GL F++F LS + + YA L+ L QYR +G + I+ Sbjct: 114 SINPKLEGILNGLTTEFSKFELSAFTSLRSTYAKTLFRLLMQYR---STGYYVVNIEEFR 170 Query: 190 ERYQLPQSYQRMPDFRRRFLQVCVNEINS-RTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 E +P Y +M + ++ L+ + E+N+ + ++ I+ KKG + + F+F + + Sbjct: 171 ELLNIPD-YYQMGNIDQKVLKPAMKELNNYFEDLEITKIKAKKGNKIAKLEFTFTGLKTT 229 Query: 249 TTG 251 Sbjct: 230 KPS 232 >UniRef50_D0UIP0 Replication initiator protein n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=D0UIP0_AGGAD Length = 325 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 49/238 (20%), Positives = 97/238 (40%), Gaps = 7/238 (2%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + +SN L + Y L+ + +++ + ++ + + D I +YAE G+ Sbjct: 2 SELIVYKSNGLVVSRYDLTEQETKLISYGIAKLNPTLTNPTKEDRTAIIPYKEYAEFMGI 61 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + + ++ A+ + + + P A K F W K + + + Sbjct: 62 SDELSWHNLNNAISNLMSRTIEIVNPNPQAEISKII--FQWVNKAEFNQQNQCVELTFSE 119 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY--RKPDGSGIVSLKIDWIIER 191 + P+ L N F +++L K + N Y+ R YE L + K V L + E Sbjct: 120 EIKPYLFNL-NEFVKYKLVHIKSLNNKYSTRFYEILLKLLGEKGKVKADVELSLAEFKEM 178 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 L +Y F +R L++ VN++N+ + + +S+ KGR +VFS Sbjct: 179 LVLDANYPTYKQFNQRILKMIVNDVNNNSNLNVSFTT--KGRPVDTLVFSIEKQEQKE 234 >UniRef50_Q83XW3 RepA n=1 Tax=Flavobacterium psychrophilum RepID=Q83XW3_FLAPS Length = 314 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 88/234 (37%), Gaps = 22/234 (9%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 +I+ SN +T + ++ Q +L++ + + K+D D I + Sbjct: 9 DKKIMMSNSITSGRFDVTACQLDILFMLLSSLEKNDAV----DKEYIISALDIEALT--K 62 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 + +R++ + F + DEK + + K + + G + V INP Sbjct: 63 KKWNYQQLRKSTEDFGSRMFEI-------EDEKSLKQIWLWSKVEYYHNTGAFGVLINPI 115 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 +F L++ FT +L T+ YA RLY CQYR + + +D + L Sbjct: 116 ARQYFFELKDNFTSLQLKSVLNCTSKYAKRLYSIACQYRNMKFNP---MPLDEFKKMLGL 172 Query: 195 PQS-----YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK-KGRQTTHIVFSF 242 Y+ ++ L V +IN T +R Y K + R I Sbjct: 173 IDKNGKDTYENATALKKNVLDVAKKQINENTDIRFDYKLTKVRSRSYNTIHLYI 226 >UniRef50_B0V3W3 Putative replication protein n=2 Tax=Acinetobacter RepID=B0V3W3_ACIBY Length = 316 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 97/245 (39%), Gaps = 18/245 (7%) Query: 7 INHKKRKNSPRIVQS--NDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHV 64 + K+ P + N +TE S+S D+KR+L + R D + Q+ I Sbjct: 3 KENSYDKSYPVTTMAIQNKVTECFKSMSVDEKRILIMASPIARNVDASEQDQ---ILISA 59 Query: 65 AKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 ++A+ G+ A K I A K + + D W I + Sbjct: 60 QQFADDCGIKVNSAYKQIENASKKLVDRSFSYVN------DRGKKVYSNWVIDATY--ED 111 Query: 125 GLYSVHINPYLIPFF--IGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 S+ ++ + N +T+++ ++ Y++ Y +K Sbjct: 112 AGISLRFTSIVLVMLKILDKYNPYTRYKKDVVLKLKKDYSIDFYHLA---KKNQAKNGFE 168 Query: 183 LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF 242 L +D + + LP+SY+ + + +RR L+ ++EIN T + + Y KKGR F+ Sbjct: 169 LTLDEMFTEFGLPESYRDLRNLKRRVLKSSLDEINEFTDVTVDYSPVKKGRSVVGFKFTV 228 Query: 243 RDITS 247 ++ + Sbjct: 229 KEKSK 233 >UniRef50_Q8GN68 RepB n=6 Tax=Bifidobacterium longum RepID=Q8GN68_BIFLD Length = 297 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 80/241 (33%), Gaps = 17/241 (7%) Query: 14 NSPRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 ++ + SN A +L ++R+ E + + Sbjct: 2 SNEIVKFSNQFNNVALKKFDAVHLDVLMAIASRVREKG------TATVEFSFEELRGLMR 55 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 L +K + D F F K P +V +N Sbjct: 56 LRKNLTNKQL---ADKIVQTNARLLALNYMFEDSGKIIQFALFTKFVTDPQEATLAVGVN 112 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 L ++FT+F L+E ++ + YA Y QYR SGI + D Sbjct: 113 EEFAFLLNDLTSQFTRFELAEFADLKSKYAKEFYRRAKQYR---SSGIWKISRDEFCRLL 169 Query: 193 QLPQSY-QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF-RDITSMTT 250 +P+S +++ D +R L+ + E +++ K R+ + VF+F R+ + Sbjct: 170 SVPKSTAEQVRDLNKRVLKPIIEECGPLLGLKIERQYVK--RRLSGFVFTFARETPPVID 227 Query: 251 G 251 Sbjct: 228 A 228 >UniRef50_D2QUY6 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QUY6_9SPHI Length = 323 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 99/228 (43%), Gaps = 19/228 (8%) Query: 24 LTEAAYSLSRDQKRMLYLFVDQIRK-------SDGTLQEHDGICEIHVAKYAEIFGLTSA 76 L + + ++R+ +L + I++ TL +I + ++ +S Sbjct: 13 LLLSRNNFDLLERRVYWLILRHIKQLQTLRPAEVETLPSEFPAFKIPITDL-QLPNSSSE 71 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 ++ + +++ P + + S F + S+G+ +V +N +L+ Sbjct: 72 VNYSTYKRVAQRLTSRQLYLDSPAQH-----EFTSVVVFPMARY--SKGVLTVEVNKHLV 124 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 P+ I L +T+ +L + + YA LY LC++ +GI + + + + Q Sbjct: 125 PYMIDLSKGYTKLQLQAALSLNSQYAQNLYTRLCKFLD---TGIWRVSVIDLKDILDA-Q 180 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 Y R +F++ L + EIN +T + + EK++GR T ++F+ + Sbjct: 181 QYVRWSNFKQTVLARAMEEINQKTDIEVFVNEKREGRFITTLIFTIKR 228 >UniRef50_Q19N19 Replication initiation protein n=2 Tax=Campylobacter RepID=Q19N19_CAMJE Length = 358 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 103/250 (41%), Gaps = 8/250 (3%) Query: 3 ETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 +T+ +KKR + Q+N A Y ++ ++ +M V QI +L + +CE+ Sbjct: 2 QTSKKTNKKRIQKAVVTQNNRFVYAKYDMNTNELKMFMWIVAQINSQKDSLFQ---VCEM 58 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVV--FYRPEEDAGDEKGY-ESFPWFIKRA 119 +++ E+ S E I+ + + K + F +E E P F Sbjct: 59 PLSEIFEVLNHQSEENYTYIKNLIDNMGKKTYIEDFKLLDEMTMKEVEIHRVMPLFQFIE 118 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 + S +N L+ + + + FTQ + ++ +++ + Y++R+Y L Sbjct: 119 YKKGASSISYRLNDSLMQYLLDQKRDFTQLKFNDIQQMKSAYSIRIYNMLV-CELKQNKQ 177 Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPM-RLSYIEKKKGRQTTHI 238 + + + + ++P++ F + L+ +IN ++ + L K GR+ T + Sbjct: 178 SLKINLAVLQNLLEVPKTLLEYKHFNVKVLKQAEKDINGKSNLVLLEIKTYKTGRKITDL 237 Query: 239 VFSFRDITSM 248 F F + Sbjct: 238 EFIFDYKNND 247 >UniRef50_B1F975 Plasmid replication initiation protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1F975_9BURK Length = 408 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 83/237 (35%), Gaps = 13/237 (5%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 S + + L +++ + + + + EI V +E+ Sbjct: 15 NVPSSELRKHVGTVHVGGDLGLLGRKLSNVLLLNAYDNLLKK----SVHEIPVGIMSEML 70 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 G S +++ALK + + F +E G + + G+ + Sbjct: 71 GFDSKNT-TALKEALKKISTTPIEFDILHAAGDEEWGVTT--LLSSA--NIRNGIVTYEY 125 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 + L + ++ K+ + YA+ LYE+ ++++ +G + +D + Sbjct: 126 SSTLANKLAN-PEIYLLININVQKQFSGAYALALYENCLRFKRTGSTGW--ISVDIWRKL 182 Query: 192 YQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 S Y F ++ V E+N+ + + ++ +++ R+ I F D Sbjct: 183 LGAEASTYDEFKHFNSEVIKKAVKEVNTVSNILITPEYERQNRRVAKIRFLVEDNPQ 239 >UniRef50_C5B575 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B575_METEA Length = 363 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 73/236 (30%), Gaps = 17/236 (7%) Query: 20 QSNDLTEAA--YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 ++ + A L+ +++ + + + V + G Sbjct: 22 KAIEAVTAKPMGDLNIADQKLFDYLLWLAH----DALTSRPVHSVAVRDVLQYLGSGVRL 77 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 A D+ +L+ V + + G +P L+ Sbjct: 78 A--DLEDSLRRLGNVNVEITYKNDGQEHT---VFVHFLSADLCRAENGELRYAFDPILLT 132 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 F + + + A RLYE Y K + + +D + + Sbjct: 133 FLNQPS-VYAAINMMHVRSFRRIGAKRLYEHALLYVKRYH-PVWQVPLDDLRRVCDVSDG 190 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKG--RQTTHIVF--SFRDITSMT 249 Y R +FR++ L+ V E+N+ L Y E G R+ THI F + +T Sbjct: 191 YPRFDNFRKKVLEPAVAEVNAIAGFVLEYKEVTAGDSRKVTHIRFEPRLKTKDELT 246 >UniRef50_O69393 Replication protein n=1 Tax=Ruminococcus albus RepID=O69393_RUMAL Length = 285 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 84/237 (35%), Gaps = 25/237 (10%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 +S + ++L++ + Q+ D + V + A + +D+ S Sbjct: 1 MSLREAQLLFIAIAQVVHDDKDFKT----YTTTVPELATFMEIDENSLYRDLEGICTSLC 56 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 + V E+A K ++ F W + G ++ ++ + P+ + L+ + Q Sbjct: 57 SQVVKIQVGGENAKKGKKWKIFHWVSSAMY--DNGKLTLRLSDDIKPYLLELEAHYAQPF 114 Query: 151 LSETKEITNPYAMRLYESLCQ--YRKPDGSGIVSLKIDWIIERYQ----------LPQSY 198 L + YA RLY+ L K + + + + +Q + + Y Sbjct: 115 LGTLMTFRSYYATRLYQYLLADIGAKWGKIYEWNFTCEQLRDLFQPYVKDDKGNVIKELY 174 Query: 199 QRMPDFRRRFLQVCVNEINSRTPMRL-SYIEKK---KGRQTTHIVFS---FRDITSM 248 R D R ++ + E+ + + Y E + +GR + F F + Sbjct: 175 PRNYDLVRFTIKPALEELGASDFAYVWDYEEHRAKTRGRPLQSVSFKAILFENKEKK 231 >UniRef50_Q4HN85 Initiator RepB protein family n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HN85_CAMUP Length = 370 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 50/251 (19%), Positives = 105/251 (41%), Gaps = 16/251 (6%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 T +I K+ ++ LTEA L+ + ++ Y V I+ SD +E E Sbjct: 3 KNTEIIELKEGFTRNQVRTHPILTEARSKLTALEYKIFYQIVTLIQMSDEEFKE----YE 58 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 I + K+AE L + + ++ S A + D K ++ F + Sbjct: 59 IDILKFAEALNLPTTN-REFLKNTCLSLAKQVF------YRDYDNKNFDVINIFQSFKYR 111 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 + + + P+ + L+ ++ K + YA+R Y L YR+ Sbjct: 112 HKEQKIIIKFSEDIKPYLLQLKQFTKIHQIKYIKSFDSKYAIRFYTLLKDYRQM---TYR 168 Query: 182 SLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLS-YIEKKK-GRQTTHIV 239 ++ + + +LP+SY+ D + ++ + EI++++ + ++ Y KK G++ TH Sbjct: 169 EFSVEALCKMLELPKSYKSFSDIYKYVIEPALREIDAKSDLEITNYEITKKIGKKITHFK 228 Query: 240 FSFRDITSMTT 250 SF++ + + Sbjct: 229 ISFKNKSEKMS 239 >UniRef50_D0DD73 Initiator RepB protein n=2 Tax=Rhodobacteraceae RepID=D0DD73_9RHOB Length = 342 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 29/259 (11%), Positives = 79/259 (30%), Gaps = 20/259 (7%) Query: 1 MAETAV-----INHKKRKNSPRIVQSNDLTE--AAYSLSRDQKRMLYLFVDQIRKSDGTL 53 MA+ + R N+ +++ +L + L+ +R+ ++ + Sbjct: 1 MAQRPASPKPYRTIEARPNAESLIKPGELVDLVEVTPLTLADRRIYNQLLENAWDAIDKP 60 Query: 54 QEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFP 113 H I + S ++ + + ++ V + + + Sbjct: 61 VTH----VISKSDLR-----GSHNSNDRVGETIERLMSAIVKVRVTRDGEDAIERVQLLG 111 Query: 114 WFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR 173 + GL I L F + + +++ YA+ LYE + + Sbjct: 112 --GNIETTRRDGLLEYEIPQRLRRIIKD-STVFARLQREVMFALSSKYALTLYEMIQKRG 168 Query: 174 KPDGSGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKG 232 ++ + + + + + R + + E+N+ + + K G Sbjct: 169 NLRYRSSEKFSLEDLRGILGVSKGKLTSWSNLKLRAIDPALAEVNALSDYVVEIAPLKTG 228 Query: 233 RQTTHIVFSFRDITSMTTG 251 R+ TH+ + + Sbjct: 229 RRVTHVELRWWRKDEGGSA 247 >UniRef50_Q3ZR50 Putative uncharacterized protein n=1 Tax=Lactobacillus paracasei subsp. paracasei RepID=Q3ZR50_LACPA Length = 246 Score = 120 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 100/237 (42%), Gaps = 17/237 (7%) Query: 8 NHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKY 67 + K++ P I S + +A + L+ + +++ V ++R+ D + + + Sbjct: 22 SIDKQQGYPVIKASQLVQKARHQLTAKELKLIDFMVSKVRRDDSGFRPLQT----TIKEI 77 Query: 68 AEIFGL-TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 ++ ++ + ++L S + K F DE W G Sbjct: 78 NQVMEFGRGTKSLTETSKSLLSLSNKGFWFQ------KDEDTITIARWLQTAEIK-KDGS 130 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID 186 ++ ++ L P+ + L Q+ LS+ + + Y++ LY+ L +R GS V+ D Sbjct: 131 ATLELDEKLAPWLLKLVGSRAQYSLSDIVALRSKYSLMLYQLLMSWR---GSMGVNGTPD 187 Query: 187 WIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 +E + + + F R+LQ ++EIN +T +++ Y +K GR + + F Sbjct: 188 EFLEFFG--HTNMKWWQFNGRYLQPAIDEINQKTGIKVHYAARKSGRTISEVEIDFT 242 >UniRef50_Q8GN33 Probable replication protein rep n=12 Tax=Bacteria RepID=REP_BIFLO Length = 297 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 75/241 (31%), Gaps = 17/241 (7%) Query: 14 NSPRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 ++ + SN A +L ++R+ E + + Sbjct: 2 SNEIVKFSNQFNNVALKKFDAVHLDVLMAIASRVRERG------TATVEFSFEELRGLMR 55 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 L +K + D F F P+ V +N Sbjct: 56 LKQNLTNKQL---ADKIVQTNARLLALNYMFEDSGKIIQFALFTVFETDPANQTLEVSVN 112 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 L ++FT+F L+E ++ + YA Y QYR SGI + D Sbjct: 113 ERFAFLLNDLTSQFTRFELAEFADLKSKYAKEFYRRAKQYR---SSGIWKVSRDEFCRLL 169 Query: 193 QLPQSYQR-MPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSF-RDITSMTT 250 + +S + + R L+ V E +++ K R+ + VF+F R+ + Sbjct: 170 NVSKSTSDSVSNLNRVVLKPIVEECGPLLGLKIERQYAK--RRLSGFVFTFARETPPVID 227 Query: 251 G 251 Sbjct: 228 A 228 >UniRef50_C4QRD6 Replication protein , putative (Fragment) n=1 Tax=Schistosoma mansoni RepID=C4QRD6_SCHMA Length = 234 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 75/231 (32%), Gaps = 13/231 (5%) Query: 21 SNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASK 80 + + ++ Q+++ + + T I + +A+ GL + + Sbjct: 12 HSAAIHIQHQMTLLQRQLWLYLLYRAFPQLKTQD----IYTVSLAELKSYLGLKTNN-HQ 66 Query: 81 DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS--PSRGLYSVHINPYLIPF 138 I+ L+ V + D + + + + P+ P + Sbjct: 67 HIKSMLEELVSIRVEWNIF---GKDSQVWGIAALLASCSITVTPNSSTVRYSFAPDIRER 123 Query: 139 FIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY-RKPDGSGIVSLKIDWIIERYQLPQ- 196 + + L T+ + +A+ LY Y R D G + ++ + + L Sbjct: 124 LSD-PLMYAKINLLITRRFKSKHALGLYCLGLDYLRLKDNYGAKTFPVNELRKYLGLEAG 182 Query: 197 SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 Y DF R L+ EIN + ++L +K R+ R S Sbjct: 183 QYPAAADFYRYVLKKAQTEINQLSDIQLQLTPIRKQREVIAFKLEMRINPS 233 >UniRef50_C6XEL6 Initiator RepB protein n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEL6_METSD Length = 442 Score = 120 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 81/262 (30%), Gaps = 19/262 (7%) Query: 1 MAETAVINHKK---RKNSPRIVQSNDLTE---AAYSLSRDQKRMLYLFVDQIRKSDGTLQ 54 M++ + K R+ ++ + ++ ++ + + Q + Sbjct: 1 MSDKNIKKQPLPALSKPDFRLKKAVEAIAIRPTRGRITMLVRKSFNVLLHQAMEQGTDK- 59 Query: 55 EHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPW 114 + +I +A+ + + + L+ +V ++ + + G S Sbjct: 60 ---EVYKIRLAELIANVS-PDSNDYETFKTYLRKMNATQVEWHSTSDGGAENWGVSSLLA 115 Query: 115 FIKRAHSPSRGLY-SVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR 173 + +S G P + + +T + + ++ LYE +Y Sbjct: 116 EAEVINSKKDGYVLEYSFAPKIKKRLLD-PEVYTHIIFRFQSVLRSNASLALYEICSRYA 174 Query: 174 KPDGSGIVSLKIDWIIERY------QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYI 227 + + W + Y F+R L+ +NE+N T + + I Sbjct: 175 TNPSNLTMRHPWQWWRPVLTGTPDQEAEGEYGEYKYFKRDVLKPALNEVNKLTDLDVELI 234 Query: 228 EKKKGRQTTHIVFSFRDITSMT 249 E K GR+ + F Sbjct: 235 EHKIGRRVDEVQFRVTAKAQTN 256 >UniRef50_C4B6A3 Putative replication protein n=3 Tax=Clostridium botulinum RepID=C4B6A3_CLOBO Length = 348 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 8/242 (3%) Query: 9 HKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYA 68 ++ ++++N L EA Y+L+ + R+ L + + +K G + C + ++ Sbjct: 2 INNKEKQKILIKNNILIEAKYNLNLVENRIFTLLLYKFQKEKGKVLT----CTLSYEEFK 57 Query: 69 EIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 + + I LKS K+++ +E++ + + S+ ++ Sbjct: 58 NVIKNKNENTINGIINILKSLQRKQIIIKERKENSKN-TIWYSYNLINGFYFDDEHNIFI 116 Query: 129 VHINPYLIPFFIG-LQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW 187 + + N +T +S + N YA RLYE L + I++ ID Sbjct: 117 IEATARIYKLLQEYFVNGYTPINISILLGLNNYYAQRLYEILRLW--SGTKSILNYTIDE 174 Query: 188 IIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + E Q+ Y DF+RR + + E+N ++ + E KKGR+ I F +D+ + Sbjct: 175 LKELLQIKDLYSLYGDFKRRVIVPAIKELNKTGFFQIDFKEIKKGRKVISIDFLVKDLDT 234 Query: 248 MT 249 Sbjct: 235 RI 236 >UniRef50_C6BQ44 Initiator RepB protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BQ44_RALP1 Length = 419 Score = 119 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 14/219 (6%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 LS Q+R+ V ++ ++ +++ + G + + + L S Sbjct: 25 LSVLQQRLFNSCVYFAQRQPE-----FHSWKVLISELEHVIGYKDSSNRRYVMGELLSLM 79 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 + VV+ ++ + H + + +P L + + + Sbjct: 80 KEHVVW--DATTNPLDRKISASTLLADVTHLVDQKAFEFSFSPKLREALLD-PKIWQRIN 136 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE-RYQLPQS---YQRMPDFRR 206 L ++ + + LYE +Y + + + + S Y FR Sbjct: 137 LLISQRFRSMGSGPLYEWCKRYERTGITSRW--SWEDFRHAVVGIIDSDSIYAEFKHFRA 194 Query: 207 RFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI 245 + L + E+N T + ++ I K GR + I F Sbjct: 195 KVLNRAIAEVNELTDIEVTLILHKVGRVVSQIQFKVDRK 233 >UniRef50_B4RHW9 Replication initiator protein n=2 Tax=Alphaproteobacteria RepID=B4RHW9_PHEZH Length = 361 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 66/237 (27%), Gaps = 23/237 (9%) Query: 20 QSNDLTEAA----YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 + +L E SLS R+L L + H ++ + Sbjct: 17 KPGNLVEVRFVKGQSLSLTASRLLALMILTAGGDAWRPVAH----KMRKSDIR-----RG 67 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR-----GLYSVH 130 + ++ I L+ K + FP G Sbjct: 68 HKGNERIADMLEELHRTLFAIDDLSWRG--RKATKRFPLIQSSREEVEEDGGERGWIEWE 125 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 P I + + YA+RLYE + R + + Sbjct: 126 FTPDARR-LIKESETYAVLNRQAVLGFRSTYALRLYE-MGALRIHRRQSTWRGDMTALRA 183 Query: 191 RYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 + + P+ Y+ RR+ L+ EI+ + + E ++GR I F F Sbjct: 184 AFGIAPELYKDFAQLRRKVLERAKAEIDQLAHFTVDWREIRRGRAVVEIEFFFLPKD 240 >UniRef50_B7LJA1 PI protein (Replication initiation protein) n=1 Tax=Escherichia coli UMN026 RepID=B7LJA1_ECOLU Length = 333 Score = 119 bits (298), Expect = 9e-26, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 97/270 (35%), Gaps = 27/270 (10%) Query: 7 INHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAK 66 + +K +I N++ + L KR+L L + + E I +I Sbjct: 36 MPIRKISEKTKIRHRNEINKTLAQLPLSAKRVLCLALVSV--DTKKPLEPGMIFKITADT 93 Query: 67 YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPE-----------EDAGDEKGYESFPWF 115 Y I + + A + +++ + ++ + + Sbjct: 94 YTSITKVKPSVAYRQLKEGAELLNTSKLSLSSDDILALSTELGLPDAMRKSLERLDMGIT 153 Query: 116 IKRAHSPSRGLYSVHINPYLIPFFIGL---QNRFTQFRLSETKEITNPYAMRLYESLCQ- 171 A+SP+ G + + P+ L +N+FT L+ ++ Y+ LY+ + + Sbjct: 154 DYCAYSPNEGYVVLKFTHTIHPYISNLIGGENKFTTQLLTSAMRLSGQYSWALYQLIRKN 213 Query: 172 YRKPDGSGIVSLKIDWIIERY--------QLPQSYQRMPDFRRRFLQVCVNEINSRTPMR 223 Y K S+ ++ + + ++ Y P F+R + + EI +T + Sbjct: 214 YSKFRTKNYFSIHLNELKDELIAYTIEDDEVVYKYPEFPIFKREVINKAIKEIKEKTEIE 273 Query: 224 LS--YIEKKKGRQTTHIVFSFRDITSMTTG 251 IE K+GR+ + + F F TG Sbjct: 274 FLSCLIESKEGRKVSVLRFEFLVSEDKFTG 303 >UniRef50_A5VGG8 Initiator RepB protein n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGG8_SPHWW Length = 371 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 86/252 (34%), Gaps = 21/252 (8%) Query: 6 VINHKKRKNSPRIVQSNDLTEA---AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 V + +R++ + + +L E+ SLS ++ L + + G D I Sbjct: 25 VADVIRRRDLDFVSKPGELVESEFETGSLSAAGRKAFALMLRKAGPDAGE----DRNFTI 80 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 + S + ++ I+ + + +V R G Sbjct: 81 TKKELR-----GSHKGNERIQPVMDELL-RVIVRIRTTTKKGKPAIMSQSLLSSCVEEIS 134 Query: 123 SRG--LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 G + + + + + + L + + Y++ LY+ C + Sbjct: 135 EDGMSVVEYEFSEAFKR-VMQRSDYYARVNLGVMLALQSRYSLTLYDLGCLIINRQNR-V 192 Query: 181 VSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK---KGRQTT 236 V ++++ + R +P+ S++ +FRR L EI+ + + E + +GR Sbjct: 193 VKMEVEELRRRLGVPEGSFKNFAEFRRDVLAKSKLEIDQLADFTVEWDEIRGSGRGRPVE 252 Query: 237 HIVFSFRDITSM 248 + +F + Sbjct: 253 AVKLTFSPKDPV 264 >UniRef50_D0I2S1 Replication protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I2S1_VIBHO Length = 353 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 94/267 (35%), Gaps = 35/267 (13%) Query: 8 NHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKS-----DGTLQEHDGICEI 62 + +S++L + LS + M+ LF+ ++ K H Sbjct: 14 ENPNELPQQFFKKSHELVFSQLGLSAREHDMMALFLSRLHKDHWTDFLEKRDIHAPRYTF 73 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 E FGL+S + +R + +G++V E+ ++ P F + + Sbjct: 74 SSDVLKEWFGLSSKQLYPTLRPVAERLSGRKVGVNN-----DKEQEFDFIPLFARVKYQ- 127 Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 +G S+ N LI +I Q + + + ++ RLY L +++ + Sbjct: 128 -KGELSIVPNSELINAYIDYSAGHAQINHKAFRSLKSEHSKRLYTLLSRFKDKG--TLHP 184 Query: 183 LKIDWIIERYQ--------LPQSYQRMPDFRRRFLQVCVN----------EINSRTPMR- 223 I+ + Y L SY++ F R ++ + EI T Sbjct: 185 QSIETLHGLYGLLDEKGQLLKNSYRQNKVFIDRCIRKPIKEMMDCPEVSREIEFHTDAET 244 Query: 224 --LSYIEKKKGRQTTHIVFSFRDITSM 248 + + +GR+ I F +R T + Sbjct: 245 GNVGFAPVMRGRRMVAIQFLYRWQTDI 271 >UniRef50_C9A1Q4 Replication protein n=8 Tax=Lactobacillales RepID=C9A1Q4_ENTGA Length = 244 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 100/242 (41%), Gaps = 14/242 (5%) Query: 12 RKNSPRIVQSNDLT-EAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 +K + N+L + + + + ++++ + E+ Sbjct: 3 KKTDLAVRYQNELNLVPLKEFNAKEMDLFFALCARMKERGLD------NVRFSFEELKEL 56 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDE--KGYESFPWFIKRAHSPSRGLYS 128 + + L++ K + ++ ++ + + F F + S+ Sbjct: 57 SEYKFTGNDRFVHD-LENVYQKMISMSYRTDEINEDGDRVIKRFVLFTGFEINVSKMFVD 115 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 V +NP L GL ++F+LS I + YA L+ L QYR +G ++I+ Sbjct: 116 VSVNPKLDYIINGLTTEVSRFKLSAFTSIRSTYAKTLFRLLMQYR---STGYYIVRIEDF 172 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEI-NSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 ER +P+SY++M ++ LQ + E+ N + ++++ I+ KKG + + F+F + + Sbjct: 173 KERMDIPESYRQMGQIDQKVLQPALRELQNYFSDLKVAKIKAKKGNKIAKLEFTFSGLKT 232 Query: 248 MT 249 T Sbjct: 233 DT 234 >UniRef50_A7ZGH9 Putative pNL871104_p1 n=1 Tax=Campylobacter concisus 13826 RepID=A7ZGH9_CAMC1 Length = 319 Score = 116 bits (291), Expect = 6e-25, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 94/238 (39%), Gaps = 18/238 (7%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 KN IV S+ +T+ L+ + ++ + I + + + E Sbjct: 2 KNRNIIVHSDKITKGRSKLNLSEMKVFLATITTIDAKNDDEF---KEITLDRQDFCEDTN 58 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 L ++ ++ + EK +E++P + + G N Sbjct: 59 LDFRT----VKSVCRTLLKQVYEI-------ETEKVWEAYPIYQVFKYDKDTGEIKFKFN 107 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 Y+ P+ + + FT++++ +T+ Y++R+Y+ L R +++ + Sbjct: 108 DYMRPYLLKIVESFTKYQIKNIINMTSKYSIRIYQILKDLRNITRQK--EFELEEFCDWL 165 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRL--SYIEKKKGRQTTHIVFSFRDITSM 248 ++P++ +R + + L++ EIN T +++ Y E+KKG++ F + Sbjct: 166 EVPKNKRRWGNLQFDILELAKKEINELTDIKILGIYPERKKGKKVLSFSIKFITSEEL 223 >UniRef50_C2F289 Replication initiator protein n=6 Tax=Lactobacillus RepID=C2F289_LACRE Length = 276 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 96/253 (37%), Gaps = 17/253 (6%) Query: 5 AVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHV 64 I++ + + + Q+NDL + +L+ + ++L ++ D D + + Sbjct: 29 KTISNLLSRQNYLVTQANDLARSFGNLTTFEHKVLDYCFSFVKAED----TSDHTYTVQM 84 Query: 65 AKYAEIFGLTSA-EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 GL S+ + + + +A ++ K ++ R ++ + G F Sbjct: 85 IDIIRHLGLNSSGKNYQRVGEAFRALNTKTAIYLRTYKNGMN--GILMTSLFDYIEI-VE 141 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLC-----QYRKPDGS 178 G + + PF L+ + F+LSE + + Y + L + + +K Sbjct: 142 DGKIEFQFSKKVAPFVFELKQNYYSFKLSELATVRSKYTLTLLKLWNANSMGKLQKATIR 201 Query: 179 GIVSLKIDWII--ERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSY-IEKKKGRQT 235 G ++ W + + P+ + FR+R L V + E+ P + Y +KKGR+ Sbjct: 202 GSITEWQSWFLGTDDDGKPRKWSA-GRFRQRVLGVSLKELGELYPKTIFYLTTEKKGRKV 260 Query: 236 THIVFSFRDITSM 248 + + Sbjct: 261 VGYTLDITPVKTT 273 >UniRef50_C0QUY9 Putative replication initiation protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUY9_PERMH Length = 516 Score = 116 bits (290), Expect = 9e-25, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 91/261 (34%), Gaps = 27/261 (10%) Query: 9 HKKRKNSPRIVQSNDLTEAAYSLSRDQK-RMLYLFVDQIRKSDGTLQEHD----GICEIH 63 K+ + + N L E +++ +K +++ L + QI D + + Sbjct: 7 EIKQFRGEIVKKDNLLNEGIHTIDTAEKYKLMLLMIAQIATQDEKPTSPEEIANRTYSFN 66 Query: 64 VAKYAEIFGLTSAEASKD-IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 V Y + + +D + + + +D G Y + F Sbjct: 67 VEDYINLKQVKDKYFMEDYVMDMAEYLRDNSAITITEFDDEGRLTRYRTIWIFEDVDFKK 126 Query: 123 SRG--LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 + + F L+N+F + L + + Y++RLYE L QY K G Sbjct: 127 TTNGWKVVYKFTYSISSFLFELRNKFIAYHLKNIMPMRSKYSIRLYELLKQYEKI---GE 183 Query: 181 VSLKIDWIIERYQ---------------LPQSYQRMPDFRRRFLQVCVNEINSRTPMRL- 224 + ID E+ L Y+ D RRR ++ V E+N T + + Sbjct: 184 RTFDIDEFREKIGTRVFVIDKKTKKKKLLSDDYKDFLDLRRRVIEKAVEEVNKYTDIEIT 243 Query: 225 SYIEKKKGRQTTHIVFSFRDI 245 +KGR+ I F F+ Sbjct: 244 DVEYHRKGRRIGFITFYFKPK 264 >UniRef50_Q1ENI4 RepB n=2 Tax=Lactobacillus RepID=Q1ENI4_LACPL Length = 270 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 13/240 (5%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + +VQ NDL A +LS + R+L + K D ++ Sbjct: 18 SRQDYLVVQGNDLARAFGNLSAFEHRVLDYCFSFVTKDSK----PDEEYSVNAIDILHHL 73 Query: 72 GLTSA-EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 GLT++ + + +A K+ K ++ R EE+ KG F G Sbjct: 74 GLTASGRDYERVAKAFKALNEKTALYLRIEENG--VKGIRMTQLFSHIDFFQ-NGSVKFL 130 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK---IDW 187 + P+ L+ + F+L E + + Y++ + + + + G V++K DW Sbjct: 131 FSTESAPYIFDLRKNYYSFKLRELARVKSKYSLIMLKLIEA-NQIGGQNPVTIKGAMEDW 189 Query: 188 IIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + + F R + V ++E+ + + + K R + Sbjct: 190 QGWFLGANRRWPA-GRFMRDTINVAIDELYQKMGLVFTVTTLKHKRSVVGYMIEVTKPEE 248 >UniRef50_D0SGM0 Putative uncharacterized protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SGM0_ACIJO Length = 433 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 93/255 (36%), Gaps = 23/255 (9%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQ---EHDGICEIHVAKYAEIFG 72 + ND+T A YS ++++++Y + +RK++ + D + I A + E+ Sbjct: 30 DLVATRNDMTTANYSYEANEEKLVYCAMVAVRKNELNKNMRFDPDELITISAANFGELIS 89 Query: 73 --------LTSAEASKDIRQALKSFAGKEVVFYRPEE--DAGDEKGYESFPWFIKRAHSP 122 +T++E + R K+ + D+ P I +S Sbjct: 90 EKDLDKDVVTASELYEIHRYGEKALQRVYDSYKPKVMLIKKKDDPTPIKVPMIIYCHYSK 149 Query: 123 SRGLYSVHINPYLIPFFIGL------QNRFTQFRLSETKEITNPYAMRLYESL----CQY 172 + +F L + F+ ++ + + YAMR+Y L + Sbjct: 150 ETKCMQIRFAREFYNYFYNLINPTGMTHSFSTHQIRYVMRMRSNYAMRIYRILNSELWKA 209 Query: 173 RKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKG 232 I + ++ + + Y+ + + + R L V +IN + + + Y K G Sbjct: 210 ESLGIQQIHDISLERLRFALDIEDKYKLIDNLKSRVLNVAKTQINKLSNLEIDYETIKNG 269 Query: 233 RQTTHIVFSFRDITS 247 + I F+++ Sbjct: 270 KFVVGIRFTYKMKEE 284 >UniRef50_D0SHA2 Replication protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SHA2_ACIJO Length = 392 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 85/246 (34%), Gaps = 16/246 (6%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQI----RKSDGTLQEHDGICEIHVAK 66 + + + SN L LS ++ + L + + + ++ Sbjct: 20 NIRQNGVVSTSNRLIRPI-ELSANEYKALLYAMAVANYGEKNNADKEITEQTYIYLYKDD 78 Query: 67 YAEIFGLTSAEASK-DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAH----- 120 A++ GL+ + I + K + + F E K + + Sbjct: 79 LADLLGLSKRNSINVAIDRIYKELSSRVAHFVIEEPVDDGRKKTKKVHSVVPIIRELRWE 138 Query: 121 SPSRGLYSVHINPYLIPFFIGL-QNRFTQFRLSETKEITNPYAMRLYESLCQYR---KPD 176 S+ + ++P+F L FT ++L + + +M LY + Sbjct: 139 DDSKNALQIRFTSEVLPYFTQLAGGNFTTYQLKHLFALDSVASMSLYTYFIKNEFKFNTQ 198 Query: 177 GSGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQT 235 + V L ++ + + + Y R DFRR L V EIN T ++L Y KKGR Sbjct: 199 ETYEVPLLLENLKALIDINETKYDRWVDFRRYVLDKIVAEINENTDLQLEYETVKKGRPI 258 Query: 236 THIVFS 241 + F Sbjct: 259 VGVKFK 264 >UniRef50_D2QVG7 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVG7_9SPHI Length = 367 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 23 DLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDI 82 L + ++R+ +L + +IR + E + + + I Sbjct: 55 KLLTSTTEFGFFERRLYWLVLREIRNIQAVDKVKIKPYE-ELKFRFHYSEVIKGHPNSSI 113 Query: 83 RQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGL 142 ++ ++ +++ + + Y + F + P +G+ + + +IP F+ L Sbjct: 114 KKVVELIQKRKINWE------DESGKYTNVVVFPMAEYWPKKGVIELTMYHAVIPVFLYL 167 Query: 143 QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL-PQSYQRM 201 + + Q+ + +++ YA L+ +L ++R +GI + + + + +SY Sbjct: 168 GSGYAQYGYEDALILSSEYAQLLFTNLARFRN---TGIWRIGLVELRQLIGAHEKSYANY 224 Query: 202 PDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 FR R + + + +IN T + ++Y +GR I F + T Sbjct: 225 SAFRTRVIDLSLRQINEHTNLIVTYEPVMQGRAVVGIEFRIQSKTPPN 272 >UniRef50_B0V3Y6 Putative replication protein n=2 Tax=Acinetobacter RepID=B0V3Y6_ACIBY Length = 390 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 86/243 (35%), Gaps = 16/243 (6%) Query: 15 SPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQI----RKSDGTLQEHDGICEIHVAKYAEI 70 + + SN L LS ++ + L + + + +H E+ Sbjct: 23 NGVVSTSNRLIRPI-ELSSNEYKALLYAMAVANYGEKNNQDREITEQTYIYLHKDDLGEL 81 Query: 71 FGLTSAEASK-DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS-----R 124 GL + I + K + + F E +++ + + + Sbjct: 82 LGLDKKNSINVAIDRIYKELSSRVAHFVIEEPVDDNKRKVKKVHSVVPIIRELRWEDDAK 141 Query: 125 GLYSVHINPYLIPFFIGLQN-RFTQFRLSETKEITNPYAMRLYESLCQYR---KPDGSGI 180 + ++P+F L N FT ++L + + + +M LY + S Sbjct: 142 NALQIRFTSEVLPYFTRLANGNFTTYQLKDLFALDSVTSMSLYSYFIKNEFKYANQDSYE 201 Query: 181 VSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 V L ++ I + + Y R DFRR L + EIN RT ++L Y KKGR + Sbjct: 202 VELSLENIKALIDIGEKKYDRWVDFRRYVLDKIIEEINERTSLQLEYDTIKKGRPIVGVR 261 Query: 240 FSF 242 F Sbjct: 262 FKI 264 >UniRef50_D1PH89 Initiator RepB protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PH89_9BACT Length = 421 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 46/257 (17%), Positives = 89/257 (34%), Gaps = 25/257 (9%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 I Q ND+T+A +LS ++ + I+K+ H ++ + + + Sbjct: 45 ENPHYFISQPNDVTQAISNLSAVERNCWLQILRGIQKNKDLPDGHPEKYQLTLTRSQLLE 104 Query: 72 GLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHI 131 ++ ++ + A + + + + P + Y+V I Sbjct: 105 CVSGHSSN--LDYAFNALKN---ITDSKKVFHSKDGHRIYAGLLSYVDEHPDQETYTVGI 159 Query: 132 NPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 P L+P+F L + FT F + + Y+ R YE CQYR + + + I + Sbjct: 160 TPVLLPYFTNLSSEFTVFDMYIEMSFKSVYSQRFYEFCCQYRNKEDKIFF-MTVHDIKKM 218 Query: 192 YQL------------PQSYQRMPDFRRRFLQVCVNEINS-----RTPMRLSYI-EKKKGR 233 + L + Y+ DF++R L N+I + Y + K R Sbjct: 219 FNLLEIKDEKGNIIQKEQYKNGSDFKKRVLDKAKNDIRKLYEKGLCDVCFDYKVKSKNSR 278 Query: 234 -QTTHIVFSFRDITSMT 249 T F + Sbjct: 279 GAVTAYYFIIETNGNTA 295 >UniRef50_C9NQ31 Replication protein n=3 Tax=Vibrio RepID=C9NQ31_9VIBR Length = 375 Score = 113 bits (283), Expect = 5e-24, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 104/272 (38%), Gaps = 31/272 (11%) Query: 1 MAETAVINHKKRKNS--PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDG 58 + +T + + I + ++L + L+ + + L + +++ D Q + Sbjct: 14 LKQTKLYGMSTSPKNLPKHIKKGHELVFSQQDLTAREANLFGLMIANMKQEDWDNQTPE- 72 Query: 59 ICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKR 118 A+ +E GL++ ++Q + A +++ ++ + +E P F K Sbjct: 73 -YRFTAAQLSEWLGLSNRAIGSQLKQVVGRLASRKIGIIIEKQG---DTEFEFTPLFKKA 128 Query: 119 AHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 + + ++ N L +I F+ + Y RLYE L +++ DG+ Sbjct: 129 TYKDR--VLTLIPNDALSKEYIEYNQGFSLINTKSFLGLKREYTKRLYEILSRFKT-DGT 185 Query: 179 GIVSLKIDWIIERYQL----------PQSYQRMPDFRRRFLQVCVNEINS--RTPMRLSY 226 + +++D + L S++ F R ++ + E++ +T + + Sbjct: 186 SLKPIEVDDLRAFMGLLNEDGSLKANKTSFKNNSVFISRCIKESIEELSEDPKTRKEILF 245 Query: 227 IE---------KKKGRQTTHIVFSFRDITSMT 249 +E K GR + F +R I + T Sbjct: 246 LESEDGLGLKLHKHGRNIHAVEFLYRWINTTT 277 >UniRef50_A9M546 Replication initiation protein n=19 Tax=Vibrio RepID=A9M546_9VIBR Length = 358 Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 29/253 (11%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 I + + L + LS + M L + ++ +D E + +E G+ S Sbjct: 17 KHIKKGHQLVFSRQDLSAREADMFALMIAHMKAND--WDRSTPHYEFTSHQLSEWLGVES 74 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 ++ A +++ E + ++ P F A+ G ++ N L Sbjct: 75 KHIGSNLSPVANRLASRKIGIKV--ETGKGDIEFDYRPLFKHIAY--KNGTLTMVPNDML 130 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL- 194 +I F ++ Y+ RLYE L +++ K+D + + L Sbjct: 131 KSEYIEYNQGFALINTRNFFDVKKEYSKRLYELLSRFKDKGFEMHQQ-KLDELKGVFGLL 189 Query: 195 ---------PQSYQRMPDFRRRFLQVCVNEINSRTPMRLS------------YIEKKKGR 233 S++ F +R ++ + E+ +R + KKGR Sbjct: 190 DEAGKLKKDKSSFKNNSVFMKRCIRESIKELTEHPQIRKELLFLEGENGEKGFEVIKKGR 249 Query: 234 QTTHIVFSFRDIT 246 T I F FR I Sbjct: 250 TITGIKFLFRWIK 262 >UniRef50_C0BF49 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BF49_9FIRM Length = 410 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 94/289 (32%), Gaps = 54/289 (18%) Query: 1 MAETAVINHKKRK-NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI 59 M ET +K+ + + +SN L E+ S S ++++L + + + DG L Sbjct: 1 MKETQKKPKEKQLLDHDTVSRSNVLIESKSSTSLFERKLLNIAIAKAYVEDGELIA---- 56 Query: 60 CEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 ++ +T +++ K G V + +++ + F K Sbjct: 57 -KVSTKDVKNYLHITGNSIYSRLKEVSKETLGHVVSI-----EDDEKENFIMFNVVNKCE 110 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLC-QYRKPDGS 178 + G+++ + P L+ +T+ L + + R+YE L QY + D Sbjct: 111 Y--RDGVFTTRFTKEMKPHIYNLKKDYTRMSLDVLCSFKSLFTTRVYEILRTQYYRFDRE 168 Query: 179 ----------GIVSLKIDWIIERYQLPQ--------------------------SYQRMP 202 I + + ++ Sbjct: 169 QCDQLIVPRPPKNPYTIAELKFTLNVVDANASKAVKRLVEQGRFEEALAEIKDAPFEDWR 228 Query: 203 DFRRRFLQVCVNEIN--SRTPMRLSYIEKKKGR--QTTHIVFSFRDITS 247 +FRR+ L+V E+ + + Y K G+ + T I F + Sbjct: 229 NFRRKVLEVAKKELEESEYSEICFDYEPVKSGKGGKVTGIRFFVKKNPK 277 >UniRef50_Q52180 RepA n=1 Tax=Lactobacillus acidophilus RepID=Q52180_LACAC Length = 282 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 83/238 (34%), Gaps = 20/238 (8%) Query: 15 SPRIVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + N L ++ + + + + V ++R + E+ Sbjct: 3 NEIVKYENQLNSVSFRHFNARELNLFFSIVSRMRDKGTEK------VSFTFNELHELSRY 56 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + + + + L+ K +D + + FP F + +V INP Sbjct: 57 SDHG--ERLVKDLEGVYTKMQNLNMWYDDGNIIEHWVLFPGFQ---INRKETTVTVSINP 111 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 L L N T+F L + + + Y+ L+ L QYR G + + Sbjct: 112 ELKSVLNQLSNW-TRFSLEQFASLKSTYSKTLFRLLKQYRTV---GKRNFSMQEFRNLLD 167 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR--QTTHIVFSFRDITSMT 249 +P+SY + D ++ + E+ + LS + +KGR + F+++ Sbjct: 168 IPKSYS-VSDIDKKVMTPFKKEL-AGIFYGLSIRKLRKGRGGKIVGYTFTWKSERKNA 223 >UniRef50_A9M4V2 Replication initiation protein RepB n=1 Tax=Vibrio sp. 0908 RepID=A9M4V2_9VIBR Length = 345 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 91/250 (36%), Gaps = 32/250 (12%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGT-----LQEHDGICEIHVAKYAEIFGL 73 +S+ L + SLS + + L + ++ K E + F + Sbjct: 32 KKSHALVFSRLSLSPVEHDIFALLLSRLHKDQWEDFMAGKTPMSPSYEFKSKVLCDWFCV 91 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + + + + AGK++ + ++ P F + + G ++ N Sbjct: 92 EKEDLYNILYKPSERLAGKKIGV------TQEGNSFDFIPLFKRVKYQ--NGTLTIKPND 143 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 LI ++G+ Q ++I + RLY LC+++ P + + I+ + + Sbjct: 144 ELITEYLGISQGHAQIPHKSFRKIKTEHGKRLYTMLCRFKSP-HTELHPQTIEDLHGFFG 202 Query: 194 --------LPQSYQRMPDFRRRFLQVCVNEINSRTPM----------RLSYIEKKKGRQT 235 L ++Y +F +R ++ + EI+ + P + K+GR+ Sbjct: 203 LLDKKGTLLKKTYAVNANFIKRIIKPAIQEIDDKEPSICFLIDEKTGNYGFSYIKEGRKV 262 Query: 236 THIVFSFRDI 245 + F F+ Sbjct: 263 VGLKFLFQWK 272 >UniRef50_B9B6L3 Initiator RepB protein n=17 Tax=Burkholderia RepID=B9B6L3_9BURK Length = 438 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 13/227 (5%) Query: 28 AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALK 87 + + Q++M + + I +A + GL S K ++ + Sbjct: 39 SGKIGLQQRKMFSSLIKNA-LRQEAFEPGRTSFSISIAALSHESGLNSNNT-KYVKDTVN 96 Query: 88 SFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFT 147 S V + D +++ + + + + + + Sbjct: 97 SLISTVVNWDYLAADRST--VWKASGLLAGAE--LEQSVLKYSFSDQIRSELLN-PEIYA 151 Query: 148 QFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY----QLPQSYQRMPD 203 + +E +++ L+E+ +Y + + + + + QSY+ Sbjct: 152 LIDMRIAREFRRSHSLALWENTVRYEGIGITA--KIPLPKFRDLILGQDKASQSYKEYKL 209 Query: 204 FRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 F+ + L C+ E+N + L IE K GR + F S T Sbjct: 210 FKSKVLVPCIQEVNEVSDHTLELIEHKSGRSVEAVQFKVTRKPSADT 256 >UniRef50_A1ZVZ5 Initiator RepB protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZVZ5_9SPHI Length = 317 Score = 110 bits (276), Expect = 3e-23, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 23/254 (9%) Query: 3 ETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 E R+ SN LS + + YL V QIR+ D L+E I Sbjct: 2 ELLEKYKSSITQDARVTLSNKFL-----LSEMEINIFYLLVSQIRQDDDDLKE----YVI 52 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFY-RPEEDAGDEKGYESFPWFIKRAHS 121 ++ + G T + + + + + +V G E + Sbjct: 53 NLKDLELLTGRTQKK--GTLLKVCEKLKKQTIVLKDVVSVTDGKEYEFIVENLIGAIKKP 110 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 ++ I+P + F+I L+ + +F+L ++ ++ RLY LC ++ +G Sbjct: 111 KNKQEIRTTISPDVRQFYINLKKHYNKFQLKNLLQLKGRHSKRLYMILCAFQD---TGWY 167 Query: 182 SLKIDWIIERY--------QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR 233 ID ++ + Q+ ++ L EI T +R EKK GR Sbjct: 168 YASIDELLNIFASKVGEDGQIEVKKYTAGSLKKHILGKAKEEIEDVTELRFEIEEKKSGR 227 Query: 234 QTTHIVFSFRDITS 247 + F+ + S Sbjct: 228 KVVGYKFNIISVDS 241 >UniRef50_A4JUI4 Putative uncharacterized protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JUI4_BURVG Length = 423 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 32/223 (14%), Positives = 70/223 (31%), Gaps = 16/223 (7%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 +S Q + + + + E + GL S + ++ + S Sbjct: 31 ISLQQAKTWNALIKNAIEQRKEGE--RTWFEYSIGDLISDVGLNSKN-REFVKATINSLL 87 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 G V + + + + + S G + + + + Sbjct: 88 GFVVNW----DQLAAKSEWNASALLAGAKISG--GTLKYQFSDNISELLLS-PEVYASID 140 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ----SYQRMPDFRR 206 + + YA+ L+E++ +Y +G +K++ + + SY F+ Sbjct: 141 MRIARTFKRGYALTLWENVVRYEGVGQTG--KMKVNTLRDLLLGMDWGQGSYAEYKIFKS 198 Query: 207 RFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 R L + EIN + + E+K GR T + F Sbjct: 199 RILVPALREINDVSDHEIVMKEEKTGRSVTEVRFFITPKRKSE 241 >UniRef50_Q3BZT2 Putative replication protein n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BZT2_XANC5 Length = 436 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 31/244 (12%), Positives = 77/244 (31%), Gaps = 12/244 (4%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 + K + + + + SL+ Q+++ + + D + Sbjct: 14 SHQDRNECDKAPANMIVRKHVGAIQIFNSLTLLQRKVFAALL--LNGYDELPNFSIISHQ 71 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 I + + + G S ++++L V + D + + Sbjct: 72 IPIGVLSYLAGFNSKNT-PYLKESLTGLVTSPVQWNILRSDGRAAWAVSATL----ASAR 126 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIV 181 G+ +P L S T+ + + A+ LYE+ Y + + Sbjct: 127 IEDGVVYYSFSPELRKRLYD-PEVSGVLSASVTRLMKSSPALALYENCMVYAEEGVTP-- 183 Query: 182 SLKIDWIIERYQL--PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 + + + + +Y F+ + L E+N P++L I + R+ + Sbjct: 184 AFALPDLKGLLGVAGNSTYDDFGKFKDKVLNPACREVNRVAPIQLEPILNRSARKVVSVA 243 Query: 240 FSFR 243 F+ + Sbjct: 244 FAIK 247 >UniRef50_B6YSC3 Replication protein A n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YSC3_AZOPC Length = 439 Score = 109 bits (273), Expect = 8e-23, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 96/248 (38%), Gaps = 27/248 (10%) Query: 9 HKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYA 68 + +S I+QS +T A Y S +KR+LY ++ ++ D I Y Sbjct: 15 NPFSTSSKDIIQSYIVTTARYDFSVHEKRILYRIIECLQYQLKGKHL-DKNFMISPDLYG 73 Query: 69 EIFGL---------TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 + S+D+++ALK+ K + + ED G K + I++ Sbjct: 74 MVRVTLPLSYLNPKKGKHISEDVKEALKTLQKKMIQY----EDNGQCKEVKLIEPPIEQP 129 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 R S ++ + F ++ L E + YAMR YE L +KP Sbjct: 130 LILGR-EVSFLLHQDAYELLLNFPKGFKRYELKTAMEFNSVYAMRFYELLSGQKKP---- 184 Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK-------KKG 232 ++ + + +L Y+ + F R + E++ ++P +Y + K Sbjct: 185 -LTYSTEKLKTMLKLENKYRDIRTFISRIIDHSKKELDQKSPYTFTYELEHEKERNQKGR 243 Query: 233 RQTTHIVF 240 ++ ++I F Sbjct: 244 KKISNIKF 251 >UniRef50_B6YSB4 Replication protein A n=2 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YSB4_AZOPC Length = 328 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 78/231 (33%), Gaps = 20/231 (8%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEA 78 +QS L+ + S +K +LY V+ I+ + + + L E Sbjct: 27 IQSYLLSASKRPFSEGEKNVLYRLVECIQLDKEDQHMDSFLRKNPNGEVDIALFLKDGED 86 Query: 79 SKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPF 138 I+++L + + + E + + +K S S ++ + + Sbjct: 87 LMQIKKSLDELQKRTIHY-------EAEGVWTTIHLLLKPRMSQSNRTVTLRLYQEVYEA 139 Query: 139 FIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSY 198 + L + L + Y R YE L + + ++ I + Y Sbjct: 140 LLHLPYKEQMKELEAIMSFRSIYTKRFYELLK-----GQNNSIHYNMENIRTLLGVENKY 194 Query: 199 QRMPDFRRRFLQVCVNEINSRTPMRLSY--IEKKK------GRQTTHIVFS 241 ++ +F R + + E+N + +Y +KK ++ I+ + Sbjct: 195 KKTNNFLTRVIDTAMKELNQKGTFSFTYQLEYEKKHNPKGGNKKVIGIIIT 245 >UniRef50_Q68BL4 Replication protein n=2 Tax=Lactobacillus RepID=Q68BL4_LACCA Length = 270 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 87/258 (33%), Gaps = 30/258 (11%) Query: 12 RKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF 71 + + Q+NDL + +LS Q ++L + +D + + + + Sbjct: 10 DRQDYLVTQANDLARSLGNLSTFQHKVLDYCFSYVTANDNA----NTVYHLTTLEIIHHL 65 Query: 72 GLTSA-EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH 130 GL ++ ++ K + +A K+ ++ R E G G F G Sbjct: 66 GLNTSGDSYKRVVKAFKALNENTAIYMRTTEPDGKH-GILMTSLFAYIKVI-DDGRVEFK 123 Query: 131 INPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK------ 184 + + PF L+ +F F LSE + + Y + + + + Sbjct: 124 FSATVAPFVFQLKRQFYSFHLSELTRVRSKYTLSMMKL---WNANAIGKWRDQNDPSSLP 180 Query: 185 ---------IDWIIERYQLPQSYQRMP----DFRRRFLQVCVNEINSRTPMR-LSYIEKK 230 DW + + F+++ + V + E+ S P ++ + Sbjct: 181 PAATIKGSLTDWESWFLGSDDDGKPIKWPAGRFKQKAIDVAIKELGSLYPQTMINVLRLT 240 Query: 231 KGRQTTHIVFSFRDITSM 248 GR+ FR I ++ Sbjct: 241 HGRRIEGFQIEFRPIRTV 258 >UniRef50_B0ZE01 PI protein n=10 Tax=Gammaproteobacteria RepID=B0ZE01_ECOLX Length = 278 Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 37/262 (14%), Positives = 88/262 (33%), Gaps = 27/262 (10%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 +I N++ SL +R+L++ + QI + I +YA I Sbjct: 7 TKKTKIRHRNEINSTFSSLPLSARRILFMAMAQIDSREE--LSEGATFRITAREYAFIAD 64 Query: 73 LTSAEASKDIRQALKSFAGKEVVF---------------YRPEEDAGDEKGYESFPWFIK 117 + A + +++ + + + + Sbjct: 65 IDVTGAYRQLKEGAEELQASVIRIPRNQLLTPQGNQSSGHTKKRGKLPSDAVRLMNLTAF 124 Query: 118 RAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDG 177 + S G + + + P+ L++ +T L + + + + LY+ + + Sbjct: 125 CDYVESEGYIDIAFSHVIEPYITMLKDSYTTQVLISSVRLADQNSNMLYQFIRKQYSSGK 184 Query: 178 SGIVSLKIDWIIERYQL-----PQS---YQRMPDFRRRFLQVCVNEINSRTPMR-LSYIE 228 +++D + + +L + YQ DF + FLQ + +IN T + L Sbjct: 185 KTFFDIEVDVLKDELELFRIDNGEKVYLYQNFKDFNKVFLQKNIEKINQYTEINHLEVKI 244 Query: 229 K-KKGRQTTHIVFSFRDITSMT 249 + R+ + + FS++ Sbjct: 245 VERVARRASKLRFSYKIDKESE 266 >UniRef50_C5SZF3 Initiator RepB protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5SZF3_ACIDE Length = 453 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 70/233 (30%), Gaps = 18/233 (7%) Query: 30 SLSRDQKRMLYLFVDQIRKSD-------GTLQEHDGICEIHVAKYAEIFGLTSAEASKDI 82 +LS +++ + + ++ I ++ A S + + + Sbjct: 40 NLSLLSRKVFNVMMYHAQEMKVPGLNSPINTPASKKYFWIPLSDLARDAAYDSKDV-QYL 98 Query: 83 RQALKSFAGKEVVFYRPEEDAGD-EKGYESFPWFIKRAHSPSRG--LYSVHINPYLIPFF 139 ++ L+ + E E+ S + G + P + Sbjct: 99 KKQLEEMQN--IKLLMENERQWTSERLVSSVTLVNPAGLNKHSGQVWFGFAFPPEVHEQV 156 Query: 140 IGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ---LPQ 196 + +T+ + + + A+ LYE +Y + + Sbjct: 157 MAPST-YTRLSIVYQSSLKSGSALALYEICRRYATNPSKVTFIQTYEHWYGVITGNSISD 215 Query: 197 SYQ-RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 S F+R ++ + EIN+ T + + IE K GR+ + F Sbjct: 216 STPPVYKYFKRDTIKPAIAEINALTDISIELIEHKNGRRVEKLQFRVEQTKQA 268 >UniRef50_D1XV24 Initiator RepB protein n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1XV24_9BACT Length = 389 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 81/253 (32%), Gaps = 27/253 (10%) Query: 13 KNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRK--------------SDGTLQEHDG 58 K+ ++Q +T Y S Q R+L V+ ++ +E D Sbjct: 44 KDETWLIQPIAVTMMRYDYSLIQVRILVSIVENLQAILLGILNNKQSAQLDLFQTKELDE 103 Query: 59 ICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKR 118 + + + G+ ++R +LK A V + Y + Sbjct: 104 DGRMPIKLPFKELGVDPNH-YPELRTSLKMLASLPVEIPYKTTEGRKYTKYTNLCDVYIP 162 Query: 119 AHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 + +N + + L + + N Y R+Y + + + Sbjct: 163 QDRSYNKYAILKLNRAVAERLVSLDLGYHRLGKQIVFACKNKYTQRIYMFIESWVNKGRT 222 Query: 179 GIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINS-----RTPMRLSYIEK---- 229 I ++ + +L +Y++ DF RR L + E+ Y +K Sbjct: 223 VIKTI---DFRKMLRLEDNYKKFSDFCRRVLDPAMAELKDMAGKGYCDCYFEYEKKYDHG 279 Query: 230 KKGRQTTHIVFSF 242 ++G + ++F+ Sbjct: 280 QRGGEPDELIFTI 292 >UniRef50_B9ZQ30 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ30_9GAMM Length = 412 Score = 106 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 78/238 (32%), Gaps = 12/238 (5%) Query: 17 RIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 + + + + L+ ++R+ + + + + +H I+++ A+ S Sbjct: 13 ILYKHTGVIHVSAPLTGLERRIYNVLLRHAQPHLRSHDQHS----INLSHLAQRLEYRSR 68 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFP--WFIKRAHSPSRGLY-SVHINP 133 + +++++ K V F +D ++ + + + P Sbjct: 69 N-RAHLVRSIEALHTKPVKFNILGKDKKNQDQWVAMQGYLLAEIGIGRDDPDICYYSFGP 127 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYE-SLCQYRKPDGSGIVSLKIDWIIERY 192 + +T+ L ++N +A+ L+E L S + + +D E Sbjct: 128 NMARLLAD-PAIYTRLSLESQNRLSNKHAIALHEFYLAALPAHLHSIRLDVAVDTYCELL 186 Query: 193 QLP-QSYQRMPDFRRRFLQVCVNEINSRTPMRLS-YIEKKKGRQTTHIVFSFRDITSM 248 L SY + R R L+ +I+ + + + ++ I Sbjct: 187 CLSSASYGQYKHLRARVLEPAHRDISENGDIEVEQVDQTRRRNAVVSITVRIARKARD 244 >UniRef50_UPI00016C5BA2 putative replication protein n=1 Tax=Clostridium difficile QCD-63q42 RepID=UPI00016C5BA2 Length = 395 Score = 106 bits (265), Expect = 6e-22, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 13/239 (5%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 ++Q N+L ++ Y + + ++ Y + +K + + I + Sbjct: 3 KKEILMQPNNLIKSKYDFTNVENKLFYKILFNAQKQQNS----SYVTTISKEELKVFMKN 58 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + K+I++ L F + F EE G K + S + +Y++ ++ Sbjct: 59 NNDYEHKNIKEILNMFQQSVLEFDYIEETTGKLKTFGS-GLINTYELDHTDQIYTIMMHE 117 Query: 134 YLIPFFIGL------QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW 187 L +N +T LS Y RLY + + + + K+D Sbjct: 118 VLYNHITDFVKMQKKKNGYTAINLSVLFNFRGAYTQRLYTLFRLWSRENKEVEIKYKLDE 177 Query: 188 IIERYQLPQS-YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK-KGRQTTHIVFSFRD 244 + +L + Y F++ L+ +NEIN + M +S E+K K R+ I+FS D Sbjct: 178 LRFYLKLKDNVYPEYKYFKQNVLKRAMNEINKKGNMVVSIKEEKRKNRKIDEIIFSVID 236 >UniRef50_C5D170 Putative replication protein n=1 Tax=Variovorax paradoxus S110 RepID=C5D170_VARPS Length = 457 Score = 106 bits (265), Expect = 7e-22, Method: Composition-based stats. Identities = 29/244 (11%), Positives = 74/244 (30%), Gaps = 19/244 (7%) Query: 14 NSPRIVQSNDLTEAA---YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 + ++N+ L+ +R+ + ++ + + + +++ Sbjct: 20 EEQSVAKANEAIAIRPKRGRLTLLSRRIYNALLYHSQRQGVD----EPVYRLTLSELIGD 75 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS-PSRGL--- 126 S + ++ L+ + + K + S RG Sbjct: 76 ARFNSNNT-ELLKSHLRDMQATTIEWSTSSSSL---KRWVSSQLLGTVTIEEQGRGRPCM 131 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID 186 + + + +++T+ L + ++ + A LYE +Y G + + Sbjct: 132 VTWRYPDEIKERLVK-PHQYTRVLLEMSSQMRSYSAAVLYEIGARYLTSPGRLSMREDVV 190 Query: 187 WIIERYQLPQSYQ--RMPDFRRRFLQVCVNEINSRT-PMRLSYIEKKKGRQTTHIVFSFR 243 W + +R + + EI++ L IE K+GR+ I F Sbjct: 191 WWAAVLTGRSDIKEVDYRFLKRDVISKALAEIDALCEDFGLELIEHKRGRKIEEIQFRVV 250 Query: 244 DITS 247 Sbjct: 251 PKVQ 254 >UniRef50_A8EVY6 Replication protein n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EVY6_ARCB4 Length = 264 Score = 106 bits (264), Expect = 9e-22, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 89/241 (36%), Gaps = 27/241 (11%) Query: 8 NHKKRKNSPRIVQSNDLTEA--AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 K + +V+ N L A Y ++ +++ + I D +I Sbjct: 14 KMSKVEKENLVVKHNALINATTKYKYETNELKLICTLISNIDNQK------DKSFDIKYM 67 Query: 66 KYAEI-FGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 ++ F + I +S K G F WF + Sbjct: 68 NLRDLNFSEKDITNVEYITNLCESIMSKPFKI-----------GKGVFNWFSGLVY--DD 114 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 G+ + L P+ + L++ FT++ +S ++ + Y+++++E L QY+ ++ Sbjct: 115 GVIEYAFDKRLKPYLLELKDNFTRYNISNILKLRSAYSIQVFELLTQYKTIGN---RTIT 171 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRD 244 ID + ++P +Y D R ++ ++ T ++ + KK G+ I F D Sbjct: 172 IDEFRKLLKIPNTYTN-KDI-RVMIESVQKDLKKNTTIKFEFSFKKLGKSFHSIDFQICD 229 Query: 245 I 245 Sbjct: 230 N 230 >UniRef50_Q06362 ORF195 n=1 Tax=Desulfovibrio desulfuricans RepID=Q06362_DESDE Length = 195 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 16/189 (8%) Query: 16 PRIVQSNDLTEAAYS-LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + +SN L A +S S + RM+ L +R+ D QE V+ + L+ Sbjct: 11 EIVKKSNALARAKWSPKSVWEPRMVALVASMVRQDDADFQE----YRFPVSTLCDEQELS 66 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 KDI+ A+++ V+ + K Y ++ F K + G+ +P Sbjct: 67 GKR-YKDIKAAVENVMKAYVMI-------EEGKNYVAYSIFSKCGY--ENGVMVAAFHPD 116 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY-RKPDGSGIVSLKIDWIIERYQ 193 L P F+GLQ +FT++ L E + + Y+ R++E L + KP+ + + + + W + Sbjct: 117 LKPHFLGLQKQFTRYSLMEFLVLPSTYSQRVFEVLRSWDDKPEVTIHLLIFMKWWVRLLL 176 Query: 194 LPQSYQRMP 202 +S Sbjct: 177 CGRSTPTFA 185 >UniRef50_C7C2U9 Plasmid replication protein n=1 Tax=Staphylococcus aureus subsp. aureus ST398 RepID=C7C2U9_STAAU Length = 271 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 78/235 (33%), Gaps = 16/235 (6%) Query: 16 PRIVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + NDL S + + + + ++R D + E+ Sbjct: 3 EVVKYHNDLNTVVMRSWKPVEMNIFFGIIAKLRDKD------TRKIIFSTDELREMTDTA 56 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPY 134 + K +A+ + K E DE+ Y F + ++ ++ + Sbjct: 57 GNKNLKRWNKAMIDVSQKVSQLNYYYE---DEERYVLMMLFSMFEVNKKEQTLTIQVSEH 113 Query: 135 LIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 L FT + L E E+ + Y+ +Y L Q+R +D + Sbjct: 114 FDYVLNQLNATFTSYELREFTELRSSYSKSMYRLLKQWRTVGKK---RFSVDEFSILLDV 170 Query: 195 PQSYQRMPDFRRRFLQVCVNEI-NSRTPMRL-SYIEKKKGRQTTHIVFSFRDITS 247 P+SY + R+ + E+ N +++ E +G TH F++ + Sbjct: 171 PKSYSK-GMIDRQIINPITEELSNFFNNLKVKKIKENTQGNPITHYEFTWIPEKT 224 >UniRef50_B6YSE0 Replication protein A n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YSE0_AZOPC Length = 373 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 99/264 (37%), Gaps = 42/264 (15%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL-TSAE 77 V+ N L + + LS + +RML + + ++ K T +++ + V+ + + FG+ Sbjct: 21 VKKNALLRSIFDLSTNAQRMLAMALARLPKEPKTPEDYR--VKFSVSDFFKTFGIERGTN 78 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPW--------------FIKRAHSPS 123 ++ I A A + P+ D + + S K + Sbjct: 79 TNRLILNASDECASSVLKIESPDGDELQKFPWLSECTLRKYIVFIPDRETHVSKLNYHED 138 Query: 124 RG-------------LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLC 170 + NP L + T L+ ++ + YA+R YE Sbjct: 139 NAKTVKNPPALYQWDTVVMEFNPKLWETLKEFKGWST-VELNVLGKLQSKYAIRFYEWAM 197 Query: 171 QYR-------KPDGSGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSR-TP 221 ++ P G +++ I E+ +P+ Y+ + +F+R +++ + E+N+ Sbjct: 198 SWKGKAGKDGNPPGKYWFEMRLADIREKLAIPKSKYKAVKEFKRNVIKLPIEELNNADIG 257 Query: 222 MRLSYIEKKKGR--QTTHIVFSFR 243 +R+ K+G+ + I F Sbjct: 258 VRIDIAPFKRGQGVKLDLIRFDVT 281 >UniRef50_Q6AI77 Related to replication protein RepA n=1 Tax=Desulfotalea psychrophila RepID=Q6AI77_DESPS Length = 445 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 10/232 (4%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 + +S + Y + + + + L + + +++ AE + + Sbjct: 17 TLVRKSTKMLSKNYCFTEREGKFIDLMIAVSDGNAEDFDS----LRFSISQLAEYYKIKP 72 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 A K I++ K E+ + + ++ +G V +P + Sbjct: 73 DGAYKAIQEITAGLITKGFQLTTTSEEGAI--IVSQSSFLCQADYNKGKGTVDVRFSPIM 130 Query: 136 IPFFIGLQ-NRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL 194 + + + + + E+ R YE + Y +V ID + L Sbjct: 131 KKYLLSASLKSYIAYPIGMRNEVVGGNVWRFYEIIRLYSFLGKKTLV---IDELKVLMGL 187 Query: 195 PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 Y++ DF + ++ + EI +T M SY +K GR+T + D Sbjct: 188 TSKYKQPTDFIKYVIEKAMVEIPLKTEMYFSYKTRKLGRKTHFLDLIIIDKD 239 >UniRef50_Q4L2Y4 Replication protein Rep n=48 Tax=Staphylococcus RepID=Q4L2Y4_STAHJ Length = 288 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 83/214 (38%), Gaps = 15/214 (7%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + + + + +++++ D I A+ + + + + Sbjct: 19 RFTSTEVDLFFTLCNKLKEQD------TRKVTIPFAELKYLSNYYTRSQ----ERFINDL 68 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 + + +E F F S+ IN L + FT+F Sbjct: 69 EHVYDKMLNLTYIERNGRSFEKFILFTSYKVDLDEECLSISINSDLKHILNSITADFTKF 128 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 L E + + YA ++ L QY+ +G V + +D R +P++Y +M D +R L Sbjct: 129 ELKEMTHLKSTYAKNMFRILKQYK---HTGYVKMNLDDFKNRLDVPKTY-QMNDITKRVL 184 Query: 210 QVCVNEINS-RTPMRLSYIEKKKGRQTTHIVFSF 242 + +NE++ + ++ I+ KKGR+ + F+F Sbjct: 185 KPIINELSQIFNNLHINKIKAKKGRKIEWLEFTF 218 >UniRef50_B5ZM92 Initiator RepB protein n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZM92_GLUDA Length = 223 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 4/171 (2%) Query: 79 SKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPF 138 ++ I +L G + ++ ++ + G I LI Sbjct: 16 NERIEASLLRLMGTIAIVTIRKDGKSYKRRVQLLGP--SDESLEKDGFLHYRIPEELIEI 73 Query: 139 FIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ-S 197 + + + + Y + LYE + + I+ + +P Sbjct: 74 LQN-SEVYARLKTQVMYCFESKYTLCLYEMTERRIGLEYKQTEEFTIEELRGLLNVPDGK 132 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 +R D + L+V EIN P + + KKGR+ I F + TS Sbjct: 133 LERFADLNKYCLKVATEEINKLCPFYVDFSPIKKGRKVERIAFHWFPKTSS 183 >UniRef50_Q8GI69 Replication protein n=4 Tax=Alphaproteobacteria RepID=Q8GI69_RHOBL Length = 339 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 29/217 (13%), Positives = 67/217 (30%), Gaps = 7/217 (3%) Query: 32 SRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAG 91 S ++++L + + H EI ++ +I G+ + + Sbjct: 35 SLAALKLMHLLIGKAGGRMAEPIRH----EIRLSDIRKIDGMK-NHDRASLTPLFAELSA 89 Query: 92 KEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRL 151 + PE+ G F R + L S + + Sbjct: 90 AVLTHDDPEKMVVTIGGLLDFARIDYRHEVSNDLLVSWYFGGAFREM-AEKSCHWAILDR 148 Query: 152 SETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFLQ 210 +++ Y++ L++ + D + + + +P +R D R L Sbjct: 149 QTVFALSSKYSILLFQHIASLVNLDHVASKTFTVAELRAVLGVPHGKMERWNDVNRFALT 208 Query: 211 VCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + EIN + + L+ K GR + ++ + Sbjct: 209 PAIAEINQTSRLILTATPNKIGRTVASVTITWAEKPP 245 >UniRef50_C9N206 Putative replication protein rep n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9N206_9FUSO Length = 320 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 87/247 (35%), Gaps = 18/247 (7%) Query: 4 TAVINHKKRKNSPRIVQSNDLTEAA-YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 +I K+ + + +N+ + + + ++ +L ++++ Sbjct: 3 NDIIRKKEVFMNEVVKYNNNFNNISLRNFNANELDILMAICSRMKEKGEE------EITF 56 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 H K ++ + ++ I+ + GDE+ + F F + + Sbjct: 57 HFDKLKKLINYSDNTSATFIKD----LESTYDKLISIKLKVGDERRFIKFVLFTRYSVDV 112 Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 + +N L FT F L E + + YA Y + Q++ +G + Sbjct: 113 DEKTVEIAVNKEFAWVLNELNVTFTAFELKEFISLKSSYAKEFYRRMKQFK---STGKWN 169 Query: 183 LKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSR--TPMRLSYIEKKKGRQ-TTHIV 239 + ++ +P +Y RM D L+ E+ + ++ Y +K +GR + Sbjct: 170 ISLEDFKRIMDVPVNY-RMCDIDVWVLKPIQKELGDKFKLKIKKIYSKKSRGRPSVSGFE 228 Query: 240 FSFRDIT 246 F+F Sbjct: 229 FTFSKEK 235 >UniRef50_UPI0001BCE2AC putative RepE n=1 Tax=Campylobacter fetus subsp. venerealis str. Azul-94 RepID=UPI0001BCE2AC Length = 352 Score = 104 bits (259), Expect = 3e-21, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 22/245 (8%) Query: 11 KRKNSPRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAE 69 ++K + NDL A S S+ + + + + +++ D + + + Sbjct: 3 RQKPKQLVKYHNDLNLIAFKSFSKVENDVFFALMWKLKNQANKEIRLDFA---ELRELID 59 Query: 70 IFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSV 129 + +T+ E K I + + + F E + + + + Sbjct: 60 LRNMTNKEIEKSISDIGRKISSSLIEFETETE-----RQFFTIFQVLAVPKDTDDFYIRA 114 Query: 130 HINPYLIPFFIGLQNR-FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 IN + + FT + L E +T+ Y LY L Q+R I D Sbjct: 115 KINEPFLYILNNFEKGGFTMWELIEFSNLTSKYTQTLYRLLKQFRSTGTVTIFENDWDKF 174 Query: 189 IERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPM--------RLSYIEKK---KGRQTTH 237 +E +P+ Y M D +R L + E++ +T L Y +K+ KGR Sbjct: 175 VEIMDIPKGYA-MSDIDKRILTPAIKELSEKTLFSTDRVIFENLKYEKKRGRSKGRPVVG 233 Query: 238 IVFSF 242 I F F Sbjct: 234 IEFRF 238 >UniRef50_C5VLR9 Initiator RepB protein n=3 Tax=Prevotella RepID=C5VLR9_9BACT Length = 382 Score = 103 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 33/258 (12%), Positives = 74/258 (28%), Gaps = 27/258 (10%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRK--------------SDGTLQEHDGI 59 ++Q +T + S Q R+L V+ ++ E D Sbjct: 38 EETWLLQPIAVTMMRHDYSLIQVRILVSIVESLQSILHGILNNKRGFQLDLFHTDELDED 97 Query: 60 CEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 + + + G+ +R +LK A V + + Sbjct: 98 GRMPIKLPFKELGVDPNH-YPQLRNSLKMLASIPVEIPYKTAEGRKYTKATNLCDVYIPE 156 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 + ++ + + L + + N Y R+Y + + + Sbjct: 157 DRSYNKYAILKLDHSVAERLVSLDFGYHRLGKQIVFACKNRYTQRIYMFIESWVDKGRT- 215 Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINS-----RTPMRLSYIEK----K 230 +K + +L +Y++ DF RR L + E+ Y +K + Sbjct: 216 --VIKTLEFRKMLRLENNYKKFSDFCRRVLDPAMQELKELAEKGFCDCHFEYEKKYDHGQ 273 Query: 231 KGRQTTHIVFSFRDITSM 248 +G + ++F Sbjct: 274 RGGEPDELIFIIHRTKDK 291 >UniRef50_A1VV49 Initiator RepB protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV49_POLNA Length = 433 Score = 103 bits (257), Expect = 5e-21, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 81/225 (36%), Gaps = 14/225 (6%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 LS Q+++L ++ + T + +G I + G S ++++ ++ Sbjct: 39 LSLVQRKLLN---SWLKNAANTPHDSEGWWAIRIDAVCNEIGFNSNN-RSYLKESSEALM 94 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 + + +++ F + +R L I+ L + + Sbjct: 95 RIIFTWDVLAPE-EKRARWKASVLFPEVEI--TRYLIKYQISSQLQAHILK-PEMYALID 150 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER-YQL---PQSYQRMPDFRR 206 + ++ + +YE ++ K + + ++ + + +SY+ F++ Sbjct: 151 QAVLRKYRRAASAGIYEHCIRFEKINQTP--AIPWQEFRDIILGVSADKKSYKEYKSFKQ 208 Query: 207 RFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 + L C+ EIN+ +++ E K G+ + F + T Sbjct: 209 KVLNPCIAEINAEGAIQIELRETKVGKTVEGVFFKVQKPKLAATS 253 >UniRef50_B0S461 Replication protein n=1 Tax=Finegoldia magna ATCC 29328 RepID=B0S461_FINM2 Length = 292 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 15/217 (6%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + + + +L +++ ++ D I +I + S + + ++ Sbjct: 36 NFNATELNILMYLCSKLK------RQRDKIIDISFEDIKTLTKYGSKDK----ERFIEDL 85 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 + E F S S+G +V +N + +FT+F Sbjct: 86 QSTNRKLLDCKFSYETEDDLIDLVLFTTFKISKSQGKLTVRVNDDFLFLLNDFTEQFTRF 145 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 L+E ++ + Y Y L Q+ +G + ID +P SY RM D RR L Sbjct: 146 ELNEFVDLKSSYTKECYRRLKQF---SDTGHWYVSIDRFRYELDIPDSY-RMYDIDRRVL 201 Query: 210 QVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 + E++ I+KKKG + + F F Sbjct: 202 KPIKEELSELFDY-FKIIKKKKGNKVIGLQFDFTREN 237 >UniRef50_Q58AT2 Replication protein n=2 Tax=Cupriavidus metallidurans CH34 RepID=Q58AT2_RALME Length = 395 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 16/221 (7%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 +S +R + + ++ +I + + + ++ +++AL+ Sbjct: 1 MSLVARRAINALWLTVSENPDLEH-----YDIELGYFKWLAKFETSNNVAHLKKALRECQ 55 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 V + GD + S P + G ++ + R+T Sbjct: 56 SSSVQVSVERKGGGD-PQWVSVPLLGSVGIAG--GRVVFKVDEMIRRQLKD-PKRYTYLS 111 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP--QSYQRMPDFRRRF 208 L + + + YA LYE L R + L I+ + + +S F+R Sbjct: 112 LRMSAAL-SQYAYILYERLGALRFMGTTNW--LPIEEVRKWVNADAVKSLTEYKQFKRLV 168 Query: 209 LQVCVNEINSRTPMRLSYIEKKK--GRQTTHIVFSFRDITS 247 L + +IN T + + Y K R+ I F RD Sbjct: 169 LDKNIAQINELTDLYVEYETKTAQGSRRVAAIRFKLRDNAE 209 >UniRef50_Q9ZN83 Replication protein n=2 Tax=Lactobacillales RepID=Q9ZN83_STREI Length = 281 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 15/237 (6%) Query: 15 SPRIVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + NDL + ++ + + + R D + +A A Sbjct: 3 NEIVKHHNDLNTVIMRKWTAEEMNFFFAIIAKARNQGTKELVFD---KYQLADLANYSLE 59 Query: 74 TSAEASKDIRQALKSFAG-KEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 + + + + + + + D W S +V I+ Sbjct: 60 HNQRFYETMDNLANNISKLRYIERTSHSVDYMALFTRFKVEWTE----DLSDMKATVSIS 115 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 L+ FTQ+ L E I + YA Y L Q+R + Sbjct: 116 DKFEYIVNKLEANFTQYELEEFTSIRSTYAKTAYRLLKQWRTIGKK---EFSKEEFKMLM 172 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINS-RTPMRL-SYIEKKKGRQTTHIVFSFRDITS 247 P Y ++ D R ++ + E++ +++ K+G F+++ + Sbjct: 173 DTP-IYYQVSDIDRLVIKPILKELSQYFMGLKVKKIKSNKRGNPVLGYEFTWKPEKT 228 >UniRef50_D1TDA5 Putative uncharacterized protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TDA5_9BURK Length = 514 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 74/244 (30%), Gaps = 16/244 (6%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 N Q ND ++ +R L + + ++D Y + Sbjct: 81 NEANREIGYQRNDFFTEIVNMGLPARRFLDAAYFIVAQEPEQRDQYDVELN-----YFKW 135 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRP--EEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 + K +R +V + D ++ + RG Sbjct: 136 LMRYDSRNLKHLRTIADEAQNAKVRVTNTPADRDPNEDDLWVQVQLIGMVGFH--RGRMR 193 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 ++P L+P Q L + T A +Y+ + + ++++ + Sbjct: 194 FDVHPRLVPHIRDPQKSH-WLSLRISTAFTRSLARAIYDKVLPNVPAGRTDW--IQLEEM 250 Query: 189 IERYQ-LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK---KKGRQTTHIVFSFRD 244 + + F+R +L+ V EIN + + +SY + ++ I F + Sbjct: 251 RNWPGKMGANAAIFKYFKRDWLEPAVREINEVSDVEMSYETRTASTTSKKIDRIRFLLKR 310 Query: 245 ITSM 248 + Sbjct: 311 KDTA 314 >UniRef50_D2QVZ6 Initiator RepB protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QVZ6_9SPHI Length = 317 Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 84/219 (38%), Gaps = 21/219 (9%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI---CEIHVAKYAEIFGLTS 75 Q+N +T A Y + +KR++YL + ++ K+ D ++ + + + Sbjct: 8 KQTNAITGARYDYTTTEKRLVYLSLIEVMKTVQDGITDDFFNRDLDLFIMEDQMKKSDPN 67 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 +D R+A+ S K+ + + + + + ++G V I+ + Sbjct: 68 DNRFRDYRKAVVSLRKKDFSIDETD------GSWTETGFVTRGKYKKNKG-LEVSISRDV 120 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 +P+ L RFT + + + ++ R YE CQ+R G D + + + Sbjct: 121 LPYLYELTKRFTVLDATVVMTLASKFSQRFYEWCCQWRSV---GKFEFTPDNLRDVLCIK 177 Query: 196 QSYQRMPDFRRRFLQVCVNEINS-----RTPMRLSYIEK 229 +R ++V E+ + + +Y E+ Sbjct: 178 ---LLTAQLKRDVVEVAQAELMKMYEDGISDIYFTYSEE 213 >UniRef50_B9ECE7 Plasmid replication initiation protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9ECE7_MACCJ Length = 301 Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 26/248 (10%) Query: 16 PRIVQSNDLTEA-AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + N+L + ++ + + + +++ + ++ Sbjct: 3 DLVKYHNNLNSVVFGKFNANEMNLFFSIISKLKDKGED------TVIFSWNELKDLSRYK 56 Query: 75 SAEASKDIRQALKSFAGKEVVFYR-PEEDAGDEKGYESFPWFIKRAHSPS---------- 123 A++ L K + Y F F Sbjct: 57 P-TATQRFVSDLDKTYKKMLELNYGQTFVKKKRLTYSRFVLFTSFHIDCDMNDDGDLDAS 115 Query: 124 RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL 183 G+ ++ INP L L ++TQ+ L E ++ + Y+ ++ L Q+R +G + L Sbjct: 116 TGIVAIKINPELRHILNDL-EQWTQYSLEEFIKLKSTYSKTIFRLLKQFRT---TGYLKL 171 Query: 184 KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTP--MRLSYIEKKKGRQTTHIVFS 241 ++ E+ +P SY RM ++ + V E+N+ KKKG I F Sbjct: 172 SVEEFREQLDIPNSY-RMSHINQKVISVAEKELNAHFKNLKINKIKAKKKGAPVVAIEFR 230 Query: 242 FRDITSMT 249 + + T Sbjct: 231 WSPEKTGT 238 >UniRef50_Q5CZF6 Putative replication protein n=8 Tax=Bacteroides RepID=Q5CZF6_BACFN Length = 385 Score = 100 bits (248), Expect = 6e-20, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 87/244 (35%), Gaps = 22/244 (9%) Query: 4 TAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIH 63 + + +N + Q N +T A Q R+L +++++ +H Sbjct: 33 RTNLPVELPENPTWLKQPNVVTLMAGDFKTVQIRILIAVIEKLQNVIELSIQHIDKYGTS 92 Query: 64 V--------AKYAEIFGLTSA--------EASKDIRQALKSFAGKEVVFYRPEEDAGDEK 107 + +Y++ + A + K+++ ++ V F + G+E Sbjct: 93 IPCEQLSLFQEYSDRIRVDIAYRDLGVSPDQYKEVKSMVRKLISIPVEFDVKDPITGEE- 151 Query: 108 GYESFPWFIKRAHSPS--RGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRL 165 + F K + +S+ ++ + FI + FT++ + Y +R+ Sbjct: 152 SWAITGLFTKANIPKTPYSRGFSLEMDREVAKVFINVDRGFTRYIKEIALRAQSRYTIRM 211 Query: 166 YESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLS 225 Y + +++ G S+ +D + +L Y D +R ++ +++ + Sbjct: 212 YMLISSWKEKGG---FSIYVDRFRKFLKLEDKYPEFKDLYKRVIRPVYDDLFEQADCWFE 268 Query: 226 YIEK 229 E Sbjct: 269 MAEV 272 >UniRef50_D0I2R4 Replication protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I2R4_VIBHO Length = 307 Score = 100 bits (248), Expect = 6e-20, Method: Composition-based stats. Identities = 30/233 (12%), Positives = 76/233 (32%), Gaps = 30/233 (12%) Query: 39 LYLFVDQIRKS-----DGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKE 93 + L + ++ + + E G++S+ + +S A + Sbjct: 1 MALLLSRLHQEHWQSFIDGTAIRAPAYQFKSDVLCEWLGVSSSNLYNTLSGPAESLANRA 60 Query: 94 VVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSE 153 + D K ++ F + ++ + ++ N L+ ++G+ Q Sbjct: 61 IGI-----RQPDRKEFDFVSLFKRLSY--KDAVLTIIPNDELMKEYLGVSQGHAQVDHHV 113 Query: 154 TKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ--------LPQSYQRMPDFR 205 +++ ++ RLY L +++ + I+ + + + SY F Sbjct: 114 FRKLKKEHSKRLYPLLSRFKNEAHTLHPQ-SIEELHGFFGLLNEKGELIKTSYANNKVFI 172 Query: 206 RRFLQVCVNEINSRT-PMRLS--------YIEKKKGRQTTHIVFSFRDITSMT 249 R ++ + EI + Y K GR+ + F +R + Sbjct: 173 DRCIRQPIEEIAKHDPNIEFQISPEGTFGYRTMKSGRKIAKVEFLYRWRKPVN 225 >UniRef50_Q11ZC6 Initiator RepB protein n=1 Tax=Polaromonas sp. JS666 RepID=Q11ZC6_POLSJ Length = 431 Score = 100 bits (248), Expect = 6e-20, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 82/237 (34%), Gaps = 16/237 (6%) Query: 19 VQSNDLTEA--AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 + + A L+ QK+M ++K++ + + DG + + + S Sbjct: 27 RKPVQIVHAMPQVELTATQKKMFN---HWLKKANSSEPDADGFWTVRIDEMMVAIDFNSK 83 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 K ++ + + + +A ++S F + I+ + Sbjct: 84 N-RKFLKDSATALQRVIFAWDVITPEA-KRSKWKSSVPFPDVEI--TSSTIRFRISAEVK 139 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP- 195 P + + + K+ ++ +YE +++K + IV I + Sbjct: 140 PHVVN-PEIYALVDEAVVKKYRRVGSIGIYEHCVRFQKLGNTAIVPWPI--FRDMILGKS 196 Query: 196 ---QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 ++Y++ F+ + L + E+N+ + + E K G+ + F + T Sbjct: 197 AGRKTYEQYKVFKAKVLNPSIAEVNAEGAISVELRETKVGKTVEGVFFKVTPGRTTT 253 >UniRef50_B2TSF7 Replication initation protein Pi n=2 Tax=Enterobacteriaceae RepID=B2TSF7_SHIB3 Length = 290 Score = 99.6 bits (247), Expect = 9e-20, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 82/255 (32%), Gaps = 30/255 (11%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 ++ N+L +L K++L+L + QI + + D I + VA Y + + Sbjct: 14 TKVRHRNELNSTLSTLPMAAKKVLFLAMCQINSKNE--FDDDHIFYVTVADYIKWVQVKP 71 Query: 76 AEASKDIRQALKSFAGKEVVFYRPE-----------EDAGDEKGYESFPWFIKRAHSPSR 124 A +R + E + + + + + Sbjct: 72 DAAYLALRDGSNILDTTLLKLKHDEILELSSDLGFKFTKSNVPDSMNLSLTVFSTYYRNE 131 Query: 125 GLYSVHINPYLIPFFIGL---QNRFTQFRLSETKEITNPYAMRLYESLCQ-YRKPDGSGI 180 G + F L + R+T L +T+ A LY+ + + Y + Sbjct: 132 GRVGIKFTKEAKRFLCKLIGEEKRYTTQVLLSVVRLTSVNAASLYQLIRKIYSNNSRANS 191 Query: 181 VSLKIDWIIERYQL---------PQSYQRMPDFRRRFLQVCVNEINSRT---PMRLSYIE 228 + ID + + L Y P F+R L V EI T + E Sbjct: 192 FEMTIDELKDELNLYTIGAGGVKDYKYPDYPAFKRDVLNKSVKEIMKHTEVKNLSFVVSE 251 Query: 229 KKKGRQTTHIVFSFR 243 K GR+ + FS+ Sbjct: 252 -KIGRKVYKLKFSYT 265 >UniRef50_B1Z6C2 Putative uncharacterized protein n=3 Tax=Burkholderia RepID=B1Z6C2_BURA4 Length = 465 Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 15/228 (6%) Query: 22 NDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKD 81 N L L +R++ + + + +D Y + S+ + Sbjct: 41 NILIR-IVDLGVSARRLIDAAYFIVAQEERVHDLYDVEL-----DYFKWLMRYSSRNNAH 94 Query: 82 IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIG 141 + Q + A K ++ +K + S + + G + + LI G Sbjct: 95 LEQVITE-AQKALIQATTAPTLDGDKPFGSVQLIGRVSFQG--GRFQFRVPTDLISIIRG 151 Query: 142 LQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ-LPQSYQR 200 L T T YA +Y+ L + G+ L +D + + + Sbjct: 152 PGKSH-WLSLRITSLFTLSYARVMYDHLLPFADEGGTDW--LTLDELRGWQGEMGANALV 208 Query: 201 MPDFRRRFLQVCVNEINSRTPMRLSYIEKKK--GRQTTHIVFSFRDIT 246 F+R +L+ V +IN + + L Y + + R+ + F Sbjct: 209 FKYFKRDWLEPAVKQINELSDITLEYETRNEPGSRKIGRLRFRIARKD 256 >UniRef50_Q1CR19 Replication initiation protein A n=18 Tax=Helicobacter RepID=Q1CR19_HELPH Length = 543 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 90/237 (37%), Gaps = 26/237 (10%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 LS + +L+ +++ + + + + + S ++ + Q LK+ Sbjct: 113 KLSEREANLLFAIFQRLK------DQGNTLIRFEPQDLKRMIMVKSNLTNRQLLQILKNL 166 Query: 90 AGKE-----VVFYRPEEDAGDEKGYESFPWFIKRAHSPSR-----GLYSVHINPYLIPFF 139 + E+ + + S+ F + + V +N Sbjct: 167 LDNIGGANFWIIREHVENGEIYEDHTSYMLFKQFEIRIHKPTQTIEYLEVQLNDSYQYLL 226 Query: 140 IGLQ--NRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 L ++T F+L E + + YA LY L QY+ +GI+S++ E +P+ Sbjct: 227 NNLGMGGQYTSFKLLEFQRVRGKYAKTLYRLLKQYK---STGILSVEWSQFRELLDIPKD 283 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMR-LSYIEKKKG---RQTTHIVFSFRDITSMTT 250 Y+ M + ++ L E+ P LSY +++K R+ THI F F + T Sbjct: 284 YK-MENIDQKVLTPAFKELRKIYPFEHLSYKKERKSHDKRKVTHIDFYFEQLPQGET 339 >UniRef50_Q5I3A2 Replication protein (Fragment) n=1 Tax=Vibrio cholerae RepID=Q5I3A2_VIBCH Length = 230 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 17/214 (7%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 I + + L + LS + M L V ++ +D + E + +E G+ S Sbjct: 23 KHIKKGHQLVFSRQDLSAREADMFALMVAHMKAAD--WDTNTPHYEFTSHQLSEWLGVES 80 Query: 76 AEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYL 135 ++ A +++ E Y P F A+ G+ ++ N L Sbjct: 81 KHIGSNLSPVANRLASRKIGIKIESRKGDTEFDYR--PLFKHIAY--KNGVLTMVPNDML 136 Query: 136 IPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL- 194 +I F ++ Y+ RLYE L +++ K+D + + L Sbjct: 137 KSEYIEYNQGFALINTRNFFDVKKEYSKRLYELLSRFKDKGFEMHQQ-KLDELKGVFGLL 195 Query: 195 ---------PQSYQRMPDFRRRFLQVCVNEINSR 219 S++ F +R ++ + E++ Sbjct: 196 NEAGKLKKDKTSFKNNSVFMKRCIRESIKELSEH 229 >UniRef50_B3E5E7 Initiator RepB protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E5E7_GEOLS Length = 269 Score = 98.9 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 14/214 (6%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 LS Q++ML + ++ + + + + +I G+ + + Sbjct: 47 LSETQQKMLAAAIALVKGEADRRRT---CYAMELEQLVQICGIERGNLYESLLNETAKLL 103 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 K V + + WF S G +P + Sbjct: 104 KKGVWIF-----DEANRSVVRTVWFQSIEFSA--GKIVFQFADKALPLIFRCTSDSPGSD 156 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQ 210 L + + + + ++ + R G G++ I ++++ L + + R L+ Sbjct: 157 LIKGIQYKGKHTLAVFAMIWPCR---GKGVIEYSIPRLMQQLSLEHTRYSYGQLKLRILE 213 Query: 211 VCVNEINSRTP-MRLSYIEKKKGRQTTHIVFSFR 243 EI SR + + + GR+ + F Sbjct: 214 PAFREIYSRDDAVFVRFRPLFSGRKVEGVRFEVT 247 >UniRef50_Q46MZ9 Putative uncharacterized protein n=4 Tax=Burkholderiaceae RepID=Q46MZ9_RALEJ Length = 468 Score = 98.5 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 74/244 (30%), Gaps = 16/244 (6%) Query: 11 KRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEI 70 N Q N+ ++ +R L + + ++D Y + Sbjct: 34 NEANREIGYQRNNFFTEIVNMGLAARRFLDAAYFIVAQDPDIPDQYDVELN-----YFKW 88 Query: 71 FGLTSAEASKDIRQALKSFAGKEVVFYRP--EEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 + K +R ++ + + + + A RG Sbjct: 89 LMRYDSRNLKHLRTIADEAQNAKIRVTNTPSDREPDENDIWIQVQLIGMVAMH--RGRVR 146 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 ++ LIP + L + T A +Y+ + + +K++ + Sbjct: 147 FDVHHSLIPHIRDPRKSH-WLSLRISTAFTRSLARAIYDKVLPSVPNGRTDW--IKLEEM 203 Query: 189 IERYQ-LPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK---GRQTTHIVFSFRD 244 + + F+R +L+ V EIN + + LSY K + ++ I F + Sbjct: 204 RTWPGKMGANASIFKYFKRDWLEPAVREINEISDVELSYETKTESTSSKKVDRIRFLLKR 263 Query: 245 ITSM 248 + Sbjct: 264 KDTA 267 >UniRef50_B1BQZ4 Initiator RepB protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BQZ4_CLOPE Length = 358 Score = 98.1 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 13/248 (5%) Query: 7 INHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAK 66 + K NS I++ N+L Y+ ++++ LY ++K++ + + Sbjct: 1 MPKNKHVNSADIIKHNNLIVCKYNAQVNEQKFLYKLFQFVQKNNIETNKLTIPFDDFFYD 60 Query: 67 YAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 Y I + KD + + EE+ + K + Sbjct: 61 YKSI--VNKKIGRKDFLNLILQVQRNIITIISTEENNFITTVWF------KIKGELNFEN 112 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSL--K 184 + ++P + + ++ + + Y MR+YE L ++ Sbjct: 113 VELILDPDVFKYIKYQNGGEFTIISTDVYSLNSFYTMRIYEILKRWLAYCIKTKTPYIQN 172 Query: 185 IDWIIERYQLPQS--YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK-KGRQTTHIVFS 241 I+ + E L S Y +F R+ L+ + EIN++T + ++Y K + R+ + F Sbjct: 173 INQLKEILMLEDSKTYAEFKNFNRKILKPSIEEINNKTDILVTYNSVKGRKRKVESLEFF 232 Query: 242 FRDITSMT 249 Sbjct: 233 IEPNPKKN 240 >UniRef50_A1VWT1 Initiator RepB protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWT1_POLNA Length = 476 Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 86/244 (35%), Gaps = 28/244 (11%) Query: 30 SLSRDQKRMLYLFV----DQIRKSDGTLQE---HDGICEIHVAKYAEIFGLTSAEASKDI 82 L+ ++++L + Q+R+ + + + + + + + + Sbjct: 62 KLTAIERKLLNSILLSSARQLREYRALHSQDPSNTHLYSALADELLDPVEVGKSNLKSAL 121 Query: 83 RQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG--LYSVHINPYLIPFFI 140 R+ + + + + P+ +G +E+ + G + P + Sbjct: 122 RKHVLALRRAVINWEAPDAKSG--VVWENLSMLSEARFEIRNGGLYVLWALPPKINEALS 179 Query: 141 GLQN-RFTQFRLSETKEITNPYAMRLYESLCQYRKP---DGSGIVSL---KIDWIIERYQ 193 Q FT+ L + + + A+ LYE +Y+ +G G +W ++ Sbjct: 180 DYQEFHFTKLDLEKISRLKSYTAVALYEICVRYKNNFRKEGKGERITNASPPEWWVDALT 239 Query: 194 --LPQSYQR--------MPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFR 243 +P++ + + ++ + EIN+ T + + EKK G+ + + F R Sbjct: 240 NIVPKTNKETGQPVRREWRKVKNEAVKKAIEEINAVTDLDIVLTEKKTGKAVSLVQFEIR 299 Query: 244 DITS 247 Sbjct: 300 LKKP 303 >UniRef50_A9KCY2 Putative uncharacterized protein n=1 Tax=Coxiella burnetii Dugway 5J108-111 RepID=A9KCY2_COXBN Length = 313 Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 67/220 (30%), Gaps = 16/220 (7%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 L+ +R+ + + I + A ++G+ ++++L+ Sbjct: 21 LTLSDRRLYNYLLHNA----LDVLSKRLSFTISMTGLAGVYGVRLPPI-DRLKESLRRLM 75 Query: 91 GKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFR 150 + + + + K + G + + FT R Sbjct: 76 RTLIEYET------APGKWTTISLLDKAELDETEGQLYYCFSVDCRWLYSDP---FTLER 126 Query: 151 LSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRFL 209 Y LYE L G +S++I + Q+ D R L Sbjct: 127 CLIQAHFIQKYTHSLYELLAS-AHYAGQSTLSIEIMDLRGSLQISDNKLINYSDLDRFAL 185 Query: 210 QVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 V EIN+ + Y ++KG + T ++F ++ Sbjct: 186 IPAVKEINAYASFAVKYHTQRKGMKVTKVIFEMTTKRNIA 225 >UniRef50_A4JTT6 Putative uncharacterized protein n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JTT6_BURVG Length = 474 Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 83/247 (33%), Gaps = 9/247 (3%) Query: 3 ETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEI 62 E A + RK I+ N + ++ Q++ V +K+ + E+ Sbjct: 29 EEAETPVELRKAPETIIIRN--MSSNGEITYLQRKAYNAMVHIAQKNRKG---DEVTFEV 83 Query: 63 HVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSP 122 VA++A + G + + ++Q + A F + G+ + S Sbjct: 84 SVAEFASLCGQNTPNSRDYLKQMAREVASIRAEFDFRGDSKSGRSGWGVANMIAEVYISD 143 Query: 123 SRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR-KPDGSGIV 181 L + + + + T+ A+ L+E +Y P+ Sbjct: 144 DGQSIKFSFPSELAKRVLD-PEIYNRIDMRMQNVFTSHSALTLWEITTRYWGSPNRRTFR 202 Query: 182 SLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSR-TPMRLSYIEKKKGRQTTHIVF 240 W + + + + DF + L ++++N+ + ++ K+GR+ + F Sbjct: 203 EHWTTWSVILSGQKEPHAQFRDFNK-MLVRALDQVNAHESRFKVIPHLSKQGRKMDELWF 261 Query: 241 SFRDITS 247 D Sbjct: 262 VLEDQEQ 268 >UniRef50_Q93PC9 MS100, putative replicase RepA n=1 Tax=Microscilla sp. PRE1 RepID=Q93PC9_9SPHI Length = 347 Score = 97.7 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 88/246 (35%), Gaps = 21/246 (8%) Query: 12 RKNSPRIVQSNDLT-EAAYSLSRDQKRMLYLFVDQIRK--------------SDGTLQEH 56 ++ P I QSN L E++Y ++ + +L I ++ Sbjct: 4 KRKIPSIYQSNTLVLESSYMVNSFDRNVLNAIQRNINPFNPSVRDFFANFDWDRQSVPTE 63 Query: 57 DGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFI 116 + + A++F + K + + L + V + A + + + Sbjct: 64 YKEVTLSYDEVAKVFDYRMTD-YKRVDERLNALKNIHVGYKNETVQAEGVFVSDVYHYEK 122 Query: 117 KRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPD 176 R G ++ + + F+ N FTQ +++ + Y+ R Y+ L + + Sbjct: 123 DRKWKVLLGDVAIK---HFLAIFLKEHNGFTQIYFAQSNGLKRKYSKRWYDILSALKTRN 179 Query: 177 GSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTT 236 V ++D I +++ ++ + ++R + EI T + SY K G++ Sbjct: 180 FKRTV-FELDQIKYMFKIEDNW-QWHHIKQRVIDPAFKEIAQSTDVDPSYEIIKSGKRVV 237 Query: 237 HIVFSF 242 + Sbjct: 238 AVEIYI 243 >UniRef50_Q9RHE5 RepA n=1 Tax=Erysipelothrix rhusiopathiae RepID=Q9RHE5_ERYRH Length = 217 Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 81/222 (36%), Gaps = 16/222 (7%) Query: 18 IVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSA 76 + +ND+ + + + + + + I++ + D + + + Sbjct: 6 VRYNNDMNTIPFRNFTATELDLFFTICANIKEQGTDILTFDFD---KLRELSNYEPTILK 62 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 + D+ + K + D +E F F + S + +N Sbjct: 63 RFADDLDKTYKKLIELNIRLDYENGD------FERFALFNRYRVSMENKTIEIQVNELFK 116 Query: 137 PFFIGLQ-NRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP 195 L FT+F L+E E+++ Y+ +Y + Q++ G + I+ +P Sbjct: 117 YILNDLNIGNFTRFELAEFTELSSTYSKAIYRLIKQWKTV---GKWEVDINEFRRLLDVP 173 Query: 196 QSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTH 237 +SY+ M D +R L + +++ +L + + ++ + Sbjct: 174 ESYK-MGDIDKRILNPALKDLSPYFD-KLKIKKLDRNKRASG 213 >UniRef50_Q1PHH9 PCZ1.1 n=3 Tax=Bacillales RepID=Q1PHH9_9BACL Length = 338 Score = 97.3 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 107/255 (41%), Gaps = 29/255 (11%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAA--YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI 59 ++T +I+H+ I +SN+L+ A L+ +Q ++L + +++ G+ Sbjct: 6 SKTQLISHENS-----IKKSNELSMAKLNQGLTLNQMQLLAFSIYCTQQN--------GV 52 Query: 60 CEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 E H + + FG+T ++D R+ + + PE+D D W I R Sbjct: 53 TEFHKIDFEKKFGIT-KYKTEDARKDSDKVTSVKFSQWNPEKDYFD-------FWNIFRG 104 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 + +G+++ +IP + L+ ++ L+ + + ++ LY+ + + G Sbjct: 105 MNYHKGIFNFTWAEEMIPHILELKEKYITTDLTIASKFKSSFSWTLYDYI---KALHGYW 161 Query: 180 IVSLKIDWIIERYQLPQS---YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTT 236 + D +++ + + R+ L + + EIN T + +SY +K+GR Sbjct: 162 HKQISKDELMKLFAVENKKAYQSNTSLLRQYVLDIAIEEINEHTELEVSYNVEKEGRAIV 221 Query: 237 HIVFSFRDITSMTTG 251 + + + + Sbjct: 222 GFDLIWSNGEKIASA 236 >UniRef50_C3Q8A6 RepA n=20 Tax=Bacteroides RepID=C3Q8A6_9BACE Length = 343 Score = 97.3 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 92/258 (35%), Gaps = 42/258 (16%) Query: 13 KNSPRIVQSNDLTEA-------AYSLSRDQKRMLYLFVDQIRKSDGTLQEHD-------- 57 K I ++ D+ + +S ++R++ ++ + ++ D Sbjct: 2 KKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAELKGVKLKDYAGTKRKF 61 Query: 58 --GICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWF 115 G+ ++ + + S +I AL S AG+ + D++ + + Sbjct: 62 EHGLWDVDAQMHVSDV-IFSGRDYNEIIAALDSLAGRFFTY-------EDDEEWWKCGFI 113 Query: 116 IKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKP 175 + G+ + ++ L F + +F L++ + Y++R Y + Sbjct: 114 SNPKYKKHTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRFYMLMS----- 168 Query: 176 DGSGIVSLKIDWIIERYQLP-QSYQ------RMPDFRRRFLQVCVNEINSRTPMRLSYIE 228 + + +D + ER +P Y+ R+ +F R L+ ++ P +Y++ Sbjct: 169 GQVYPLDISLDNLKERLGIPADKYKDKNGKDRIDNFEERVLKPAKAALDESCPYTFNYVK 228 Query: 229 KKKG-----RQTTHIVFS 241 ++ + T F Sbjct: 229 VRENPNNKRSKVTGFRFY 246 >UniRef50_Q9EZ86 Replication protein B n=7 Tax=Campylobacter RepID=Q9EZ86_CAMJE Length = 345 Score = 96.9 bits (240), Expect = 5e-19, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 89/261 (34%), Gaps = 40/261 (15%) Query: 15 SPRIVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 S + ND + S + ++ +L+L +I++ + + + + Sbjct: 2 SEIVKYHNDFNKIQLPSFTEQEQNLLFLIFARIKEKGIDNVINLYANDFKINE------- 54 Query: 74 TSAEASKDIRQALKSFAGKEVV------FYRPEEDAGDEKGYESFPWFIKRAHSPSRGL- 126 + + + + + + S K E +P G Sbjct: 55 KLSNSREYLTENINSLKYKFFKANFNQIIETKTEVIHKYVNLFETMEIHYVKRNPDDGYD 114 Query: 127 -------YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 ++ INP L FT F L E ++ YA LY L Q+R +G Sbjct: 115 ESTLFNRITLKINPDFAYLVNQLTTNFTAFELEEFIALSGKYAKTLYRLLKQFRT---TG 171 Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPM---------RLSYIEKK 230 + D + +PQ Y++ + + L+ + E++ + L+Y ++K Sbjct: 172 KAYFEWDEFCKVMDIPQDYRQ-SEVDKWILKPAIKELSKERNLFDQIRVPFKNLAYEKEK 230 Query: 231 -----KGRQTTHIVFSFRDIT 246 +G + + I F+F+ Sbjct: 231 TAGRGRGGKVSGITFTFKPEN 251 >UniRef50_C9L0X5 Initiator RepB protein n=4 Tax=Bacteroides RepID=C9L0X5_9BACE Length = 367 Score = 95.8 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 83/245 (33%), Gaps = 17/245 (6%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKS-DGTLQEHDGICEIHVAKYAEIFG 72 ++Q N++T YS++ Q+ +L L DQI++ Q + V + Sbjct: 36 EEVMLIQPNNVTFGQYSVTEWQENLLTLISDQIQQHMTREKQLPKDLFNQPVVEIKCDEA 95 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 SK +++A+ + K F + + ++ +N Sbjct: 96 GGKNNKSKVLKEAI-AMMRKNFSFRWVHPNIHQTVETFGVV-ITTVHNIKGTNRVALTLN 153 Query: 133 PYLIPFFIGLQNRF--TQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIE 190 P+ IPF + T++ + + Y RLY+ +C R I+ + Sbjct: 154 PWAIPFLLYYGTGVGGTRYGKNIALTLRGNYTKRLYKIICSQRD---RREYYYSIEQFCK 210 Query: 191 RYQLPQSYQRMPDFRRRFLQVCVNEINSR-TPMRLSYIEK----KKGRQTTH---IVFSF 242 ++P SY ++ L+ I + Y KKG++ I+F Sbjct: 211 DLEIPASYSN-AQIDQKVLRPAQTRIKESEADVWFDYKFICKTPKKGQKPKADTIILFIH 269 Query: 243 RDITS 247 Sbjct: 270 ARNPQ 274 >UniRef50_Q02VJ2 Replication initiator protein n=1 Tax=Lactococcus lactis subsp. cremoris SK11 RepID=Q02VJ2_LACLS Length = 296 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 88/236 (37%), Gaps = 10/236 (4%) Query: 16 PRIVQSNDLTEA-AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLT 74 + ND + +KR++ + +++ D + + D + + Sbjct: 4 EIVQYHNDFNTVPLRGFNEREKRIVMALLHEVKGKDTQIVQLD-FHTLRGLTGWDETNHK 62 Query: 75 SAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR-GLYSVHINP 133 A ++ + + L+ + K ++ R + D F F + V INP Sbjct: 63 GANSNAEFVKYLEILSDK-IMTLRGTLRSDDGLQIVKFSLFPTFIIDGKKTNTLKVSINP 121 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 + L + FT F L + ++ Y LY + Q+R +G +K + + Sbjct: 122 EFK-YLTNLFDMFTAFELEDYNKMHTSYGQELYRLIKQFRT---TGFYRVKTEDLRHLLS 177 Query: 194 LPQSYQRMPDFRRRFLQVCVNEI-NSRTPMRLSYIEKK-KGRQTTHIVFSFRDITS 247 +P+SY R+ F + V+++ N+ + ++ +GR F+F + Sbjct: 178 VPKSYTNAEMDRKVFSKTTVSDLTNAFSNFKIKQERGTGRGRPIIGYTFTFDKEKT 233 >UniRef50_A0L312 Initiator RepB protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L312_SHESA Length = 387 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 91/251 (36%), Gaps = 30/251 (11%) Query: 19 VQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEA 78 ++++L + S++ ++ +L LF+ Q++K+ +E I ++ A+ + S Sbjct: 42 KKNHNLIYSRISMTTHEQNLLALFLIQMQKT-EWKEETQLEISIPASRLADWLEVESKSL 100 Query: 79 SKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPF 138 + I+ + V+ P +ES F ++ RG ++ N L F Sbjct: 101 AATIKPVALRLQKRTVLAEHPTTH-----EFESSVLFPTVKYA--RGKLTMVPNYDLRDF 153 Query: 139 FIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS--LKIDWIIERYQLPQ 196 F + ++ + Y+ +Y+ L +++ P+ + + + I Sbjct: 154 FHDASKGYASVNVARFLRLRGKYSKPMYDLLSRFKTPEKQLYKTDVMTLKGIFGLVDDKD 213 Query: 197 SY-------QRMPDFRRRFLQVCVNEINSRTPMRLSY-------------IEKKKGRQTT 236 +Y + F + L + EI + + IE K G + T Sbjct: 214 NYLPGKKTMKDTSVFVNQALVKSIEEIEEACSDEVMFFNTDPSGKKRHGIIENKTGNKIT 273 Query: 237 HIVFSFRDITS 247 I F + I Sbjct: 274 SIEFEYLWIDQ 284 >UniRef50_Q21QA3 Putative uncharacterized protein n=2 Tax=Comamonadaceae RepID=Q21QA3_RHOFD Length = 505 Score = 95.0 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 73/245 (29%), Gaps = 27/245 (11%) Query: 32 SRDQKRMLYLFV------DQIRKSDGTLQEHDGICEIH----VAKYAEIFGLTSAEASKD 81 + ++ + ++R D + I + + G+ K Sbjct: 60 TLHTSKLFDACILIAQLDFKLRPRDQVARIKTERISITFETRITDLVRLAGIPGKN-YKR 118 Query: 82 IRQALKSFAGKEVVFYRPEEDAGDEKGYES-FPWFIKRAHSPSRGLYSVHINPYLIPFFI 140 I + L + + +EDA +S F + RG +P ++ + Sbjct: 119 IYEDLDFLFEMILKWNVLDEDAAVAFEMKSHFFTMLGIGVGHKRGAIRFSFHPDVMDIVL 178 Query: 141 GLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSY-- 198 N T L + + LY+ +Y SL + I+ P Y Sbjct: 179 EPSNWAT-LSLKAMDGLGTLPSYALYQQTFRYLGTTAKCTASLPTETWIDLLLGPSRYVK 237 Query: 199 ----------QRMPDFRRRFLQVCVNEINSRT--PMRLSYIEKKKGRQTTHIVFSFRDIT 246 DF+RR L + +N L EK+ G + + + F F Sbjct: 238 TDPATGKKTVTSYGDFKRRVLNDAITRVNEAKALNYTLRLDEKRAGNRVSKLQFFFIPKK 297 Query: 247 SMTTG 251 + G Sbjct: 298 QASLG 302 >UniRef50_UPI0001BCA79F replication-like protein n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCA79F Length = 509 Score = 95.0 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 17/237 (7%) Query: 15 SPRIVQSNDLTE--AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 + + NDL+ +L+ ++ ++R + E+ Sbjct: 10 NEIVKYHNDLSNQIIIKTLNANELNFFMAICSKMRDKETE------EIVFTFKNLKELVK 63 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 TS + + +KS DE F F + +V +N Sbjct: 64 WTSNDN----KDFIKSLENTNRKLIALNFRFEDEIEIVQFVLFPTFTINKDMKTLTVAVN 119 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 L + FT+F L + + Y+ LY+ L +++ +G + + I+ + Sbjct: 120 KKFAFLLNNLSSNFTRFELENFTILQSKYSKYLYKELMKFK---STGYMIMSIEEFRNKL 176 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMT 249 +P Y RM + + L+ EI + + KKG+ I F F I T Sbjct: 177 DIPIKY-RMSEINKFVLKPIEQEIPNVLK-GFKIDKIKKGKSIEKIEFCFTPIKKET 231 >UniRef50_UPI0001BCE2A8 replication protein B n=1 Tax=Campylobacter fetus subsp. venerealis str. Azul-94 RepID=UPI0001BCE2A8 Length = 267 Score = 95.0 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 14/203 (6%) Query: 15 SPRIVQSNDLTEAA-YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + NDL + LS +Q +L+ ++ + + + + E+ G+ Sbjct: 2 NEVVKYHNDLNNISLGGLSENQINILFTLFAKVENKSTEI------LKFPINQIIELSGI 55 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 ++ KD +A + + D+ G F + R SV ++ Sbjct: 56 STTN--KDYLEAT--IFSQFDKLQNLKIRYNDDDGTAQEVIFPRVHIDKKREFLSVRVSE 111 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 F L N FT+F L+E ++ Y +Y L QYR +GI ++ + E Sbjct: 112 AFAYIFNSLMNNFTRFELAEFVNLSGKYTKTIYRLLKQYR---STGIFKIEFERFKEILD 168 Query: 194 LPQSYQRMPDFRRRFLQVCVNEI 216 +P+SY+RM D L+ + E+ Sbjct: 169 IPKSYKRMSDIESDILKPAIKEL 191 >UniRef50_UPI0001979AA2 putative pNL871104_p1 n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI0001979AA2 Length = 373 Score = 94.6 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 90/242 (37%), Gaps = 15/242 (6%) Query: 9 HKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYA 68 K P IVQ ND + A +++S + ++L + + + + E+ + A Sbjct: 19 KKIDLKRPVIVQLNDFSYARFNMSVSEFKILLAMLATLDSVNQSEFIEQ---EVTTRELA 75 Query: 69 EIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYS 128 EI ++ + + + + P+F + Sbjct: 76 EILQHEKNINNESY------LYDIMQKLAEKTYFSDNGESAIAVPFFKYIKKQDDKAFLK 129 Query: 129 VHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWI 188 N L PFF+ L+ F +F +E K++ + Y++RLY L + + + + + Sbjct: 130 FKFNDTLKPFFLELRRGFVKFNYTEIKDLRSFYSIRLYIMLLTELRQNRQC-LIIDYKTL 188 Query: 189 IERYQLPQ---SYQRMPDFRRRFLQVCVNE--INSRTPMRLSYIEKKKGRQTTHIVFSFR 243 + LP+ + F ++ L + +N+ L +K G++ ++F+F Sbjct: 189 CDTLGLPRHRAERKDFGVFNQKILTNFRKDMLLNAFNVELLDIQTEKVGKKVDELIFTFD 248 Query: 244 DI 245 Sbjct: 249 YK 250 >UniRef50_Q03N27 Plasmid replication initiation protein n=22 Tax=Lactobacillales RepID=Q03N27_LACBA Length = 311 Score = 94.6 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 77/224 (34%), Gaps = 19/224 (8%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASK---DIRQAL 86 + + + + + ++R D + ++ ++ DI++ Sbjct: 19 KFTPIEMNLFFSIISRMRDKG------DQTVRFSFEQLKDLSNYKPTANNRFEDDIQRTY 72 Query: 87 KSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRF 146 + G + F R + + + + F F V + +P L Sbjct: 73 EKLMG--LHFGRRSKSGLNREMFVMFTKFSIVG-EADSPYIDVEVYKDALPLLNNLDTW- 128 Query: 147 TQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSY-QRMPDFR 205 ++ L+E +++ + YA + L +R +G L + E +P+SY ++ D Sbjct: 129 VRYALAEFRDLRSSYAKTAFRLLKGFRT---TGYAFLSKEDFFELLDIPKSYWKKSGDID 185 Query: 206 RRFLQVCVNEINS-RTPMRLSYIEKK-KGRQTTHIVFSFRDITS 247 R ++ E+ + + K +G+ F+++ Sbjct: 186 RYVIKPIKEELTPLFRGLAIRKKYGKGRGKPVIGYSFTWKPEKK 229 >UniRef50_Q7WWW9 Putative replication protein n=1 Tax=Ralstonia eutropha H16 RepID=Q7WWW9_RALEH Length = 455 Score = 94.6 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 27/232 (11%), Positives = 75/232 (32%), Gaps = 16/232 (6%) Query: 21 SNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASK 80 SN + LS +R++ + + + +E + V + + TS + Sbjct: 35 SNAFVKII-DLSLAGRRLIDVAYFLVAEDQEVRRE----YRVDVGLFKWLLATTSNN-RR 88 Query: 81 DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFI 140 + + ++ + + + + + + P +G + + L Sbjct: 89 HLSKLVREAQKAAIELNEIDVEDPSKDRWGAVPLMGSA--FIEKGEFIFELPERLQRAIK 146 Query: 141 GLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS-YQ 199 + + LS + ++ LY+ L Q+ + ++ + + + Y Sbjct: 147 NPK---SSHFLSLRYVFKSVHSKVLYDRLQQFMVEGITPW--FEVQALRAWLECEKKTYD 201 Query: 200 RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK--GRQTTHIVFSFRDITSMT 249 FR + L+V ++EI T + + + ++ + F Sbjct: 202 LFKHFRSKVLEVAISEIREVTGLHIEMLTLNVPGSKKIGQVRFRLNVTEQPN 253 >UniRef50_P03067 PI protein n=4 Tax=root RepID=PIR_ECOLX Length = 305 Score = 94.2 bits (233), Expect = 3e-18, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 90/255 (35%), Gaps = 28/255 (10%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 +I N+L L KR++Y+ + I E + +I A + + Sbjct: 11 KKTKIRHRNELNHTLAQLPLPAKRVMYMALAPI--DSKEPLERGRVFKIRAEDLAALAKI 68 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPE-----------EDAGDEKGYESFPWFIKRAHSP 122 T + A + +++ K ++ + A + A+SP Sbjct: 69 TPSLAYRQLKEGGKLLGASKISLRGDDIIALAKELNLPFTAKNSPEELDLNIIEWIAYSP 128 Query: 123 SRGLYSVHINPYLIPFFIGL---QNRFTQFRLSETKEITNPYAMRLYESL-CQYRKPDGS 178 G S+ + P+ L +N+FT L+ + +++ Y+ LY+ + Y Sbjct: 129 DEGYLSLKFTRTIEPYISSLIGKKNKFTTQLLTASLRLSSQYSSSLYQLIRKHYSNFKKK 188 Query: 179 GIVSLKIDWIIERY---------QLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEK 229 + +D + E + Y P F+R L + EI +T + Sbjct: 189 NYFIISVDELKEELIAYTFDKDGNIEYKYPDFPIFKRDVLNKAIAEIKKKTEISFVGFTV 248 Query: 230 --KKGRQTTHIVFSF 242 K+GR+ + + F F Sbjct: 249 HEKEGRKISKLKFEF 263 >UniRef50_A2A225 Putative DNA Initiator replication protein RepB n=1 Tax=uncultured bacterium RepID=A2A225_9BACT Length = 169 Score = 93.9 bits (232), Expect = 4e-18, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 2/127 (1%) Query: 121 SPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGI 180 RG I P L + F + L + T+ YA+ LYE++ + + Sbjct: 8 KRKRGNLKYSIPPELA-LLLKDSTVFAKLELEVLRAFTSKYALALYEAVARRVRLKHVFT 66 Query: 181 VSLKIDWIIERYQL-PQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIV 239 +D E + P + + ++ + E+N+ + ++ + +K GR+ T ++ Sbjct: 67 ERFSLDDFRELLGVEPDKLTTYGNLNQYAIKPALLEVNALSDFTVTAMPEKTGRRVTGVL 126 Query: 240 FSFRDIT 246 + Sbjct: 127 IGWGAKD 133 >UniRef50_C8KXR0 Replication protein n=1 Tax=Actinobacillus minor 202 RepID=C8KXR0_9PAST Length = 323 Score = 93.9 bits (232), Expect = 5e-18, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 80/238 (33%), Gaps = 25/238 (10%) Query: 4 TAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGT----LQEHDGI 59 + K R++ N+L + L++ QK +++ + I++ D LQ Sbjct: 5 KEIAKQNKALAEQRVIFRNELNTYSSKLTKLQKSLIFFALSSIKQEDRDNLSALQLSQKP 64 Query: 60 CEIHVAKYAEIFGL---TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFI 116 I V + + + KDI + K + + + + ++ Sbjct: 65 ILIKVQDFLTVCNIDPKKQKNIYKDIETEILDLQKKPITYVDKHGAVHNISWFTKTSYYS 124 Query: 117 K---------------RAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPY 161 K Y ++ + + L++ F + + N Y Sbjct: 125 KESVRNYNDDDLIKKDLKFLDGHSYYLIYFTSEIANHLVKLKSNFMSYSFLISHNFDNKY 184 Query: 162 AMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSR 219 + R+YE L +++ + + + + R LP+SY + L+ +IN + Sbjct: 185 SARIYELLQEHKNSGR---ICVPMKDFVSRLALPKSYMVRSQLKHYVLEKVKEDINGK 239 >UniRef50_D0Z5I8 Putative uncharacterized protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z5I8_LISDA Length = 326 Score = 93.5 bits (231), Expect = 6e-18, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 72/256 (28%), Gaps = 37/256 (14%) Query: 14 NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRK--------------------SDGTL 53 I +S+ L A S + ++ +L L + ++K + Sbjct: 2 KPTTITKSHPLITAKMSFTAKEQDLLNLILVSLKKEANAQKKTSKLKNLPVSDKNDGVHI 61 Query: 54 QEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFP 113 + E + ++ +T + + +A K P + F Sbjct: 62 DKLSLQYEYTRQELLDLLEVTPKRLTAYLDEATDELMEKVATVRNPNTGEYRKYKLVGFS 121 Query: 114 WFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYR 173 + + ++ I+ + + F + N R+ + + +++ Sbjct: 122 SWEA-------NVLTLSIDKEVAEVLLNYSAGFAVIDFKLMFALKNKNEKRILDLISRFK 174 Query: 174 KPDGSGIVSLKIDWIIERYQLP-QSYQRMPDFRRRFLQVCVNEINSRT--------PMRL 224 + +I + E + Y FR L + I + + Sbjct: 175 GKKNT-FFKCRIKDLCEMLGVSYGDYANYNSFRIAVLSQPLARIIKASNGLWEYMPDCKT 233 Query: 225 SYIEKKKGRQTTHIVF 240 KKGR TT F Sbjct: 234 GIKIYKKGRATTENDF 249 >UniRef50_UPI0001B43BA0 replication protein n=1 Tax=Listeria monocytogenes FSL J1-208 RepID=UPI0001B43BA0 Length = 238 Score = 92.3 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 102/247 (41%), Gaps = 24/247 (9%) Query: 6 VINHKKRKNSPRIVQSNDLTE-AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHV 64 + I +S DL + A +SLS + ++ V ++ ++D L + + Sbjct: 1 MQKKXXXXKVKLITKSKDLIQKARHSLSAKELTLVDFMVSKLEETDKDL----FFVDTTI 56 Query: 65 AKYAEIFGLTSA-EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPS 123 A+ E+ A +AL + A K + E+ + P+ Sbjct: 57 AEINEVCNFGQGGAAHSSTEKALLNLANKGF-WMLLEDGTKTIGRWLEKPYI-------K 108 Query: 124 RGLYSVHINPYLIPFFIGL-QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVS 182 G + ++ + P+ + L + ++F + + + YA +LYESL Y++ + + Sbjct: 109 AGQTRLKLDSDMAPYLLNLVDGKKSRFFFKDIINLKSIYAKKLYESLRSYQEEEIT---- 164 Query: 183 LKIDWIIERYQLPQ-SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS 241 + ++ I + + R+ +L+ N+IN+ T + +SY+ K+GR+T I F Sbjct: 165 MSVNEIKILFNKEDLEWYRVL----AYLRKAKNDINNFTTIEVSYLTVKEGRETVAIQFK 220 Query: 242 FRDITSM 248 + + Sbjct: 221 IKQKDQV 227 >UniRef50_C9KLS3 Initiator RepB protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLS3_9FIRM Length = 461 Score = 92.3 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 96/254 (37%), Gaps = 13/254 (5%) Query: 1 MAETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGIC 60 + V K I Q + A Y+LS++Q + YLF+ + ++ + E Sbjct: 9 LVHRPVFLIPKDTGPMTIAQ--EFATAKYTLSKNQLKAWYLFIASMDEN--HVPEQSTTY 64 Query: 61 EIHVAKYAEIFGLTSAEASKD-IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 ++A+ + + +A + + + + +D G++ Y + + + + Sbjct: 65 VFDALRFADKLNIDARKARGMMVAEIFTKLSQNYIDLRSRGDDNGEQDIYHA-NFISELS 123 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNR-FTQFRLSETKEITNPYAMRLYESLCQYRKPDGS 178 ++ + V I P L + L+ + + + + +MRL+ L R D Sbjct: 124 YNRKTHILEVSIPPRLNQYLFNLREGTYLSMDIEDILALDTIVSMRLFIYL---RNLDCL 180 Query: 179 GIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMR--LSYIEKKKGRQTT 236 I L I+ + +F+R+ L + EI +RT + + GR+ T Sbjct: 181 NIHELSIERFRSEIGIYPE-SSYKEFKRKVLTGSIEEIRNRTKYKDFFIDDDGGPGRKAT 239 Query: 237 HIVFSFRDITSMTT 250 IVF F T Sbjct: 240 TIVFGFTKQAIADT 253 >UniRef50_C3XLI9 Replication protein n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XLI9_9HELI Length = 327 Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 78/252 (30%), Gaps = 18/252 (7%) Query: 10 KKRKNSPRIVQSNDLTEAAYS-LSRDQKRMLYLFVDQIRKS-DGTLQEHDGICEIHVAKY 67 + +P + NDL ++ + + + + D TL + V Sbjct: 52 EAEFKNPMVEFHNDLNSIVFTAFNEIDFNIFFALCFIFKNRLDKTLSLTFEEVRLLVELN 111 Query: 68 AEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLY 127 + + + ++ Y +F + Sbjct: 112 DNHKTTNRNRFYESLVSFSNKLMSLKAQ-GYKSVGINKKRKYSVINFFSVIDIDEDSKTF 170 Query: 128 SVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDW 187 V I+ L +T+F L E I + YA LY L QY G L + Sbjct: 171 FVKISEEASCLINNLFKNYTRFDLKEFCSIDSKYAKNLYRILKQYENL---GHCKLDWES 227 Query: 188 IIERYQLPQSYQRMPDFRRRFLQVCVNEINSR------TPMRLSYIEKK-----KGRQTT 236 +P+SY++ D +R L ++++NS L+Y + K +G + Sbjct: 228 FRNIMCIPESYEQ-RDVSKRVLNPSISKLNSNNYNGIPYFKDLTYQKIKVSGKGRGGVVS 286 Query: 237 HIVFSFRDITSM 248 IVF F Sbjct: 287 AIVFEFVPKNKA 298 >UniRef50_D0QMK6 Pi protein n=1 Tax=Escherichia coli RepID=D0QMK6_ECOLX Length = 284 Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 88/262 (33%), Gaps = 30/262 (11%) Query: 16 PRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTS 75 ++ N++ SLS KR+L+L + QI D +D I E+ +++ L Sbjct: 12 TKVRHRNEVGVTLASLSLSAKRVLFLALCQI---DTKEMLNDDILEVDADFFSKTTTLDK 68 Query: 76 AEASKDIRQALKSFAGKEVVFYRPE-----------EDAGDEKGYESFPWFIKRAHSPSR 124 A +++ K A +V R + A+ Sbjct: 69 YAAYAALKEGAKVLASTTLVLNRDDLKTLSNELGISTSKNKIPDRLDLNLTEFCAYYDHL 128 Query: 125 GLYSVHINPYLIPFFIGL---QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPD-GSGI 180 + +F L +NR+T L + + + LY+ + +Y + S Sbjct: 129 ATVRIKFTNTAKRYFSKLIGSENRYTTQVLKSVVILNSVNSTNLYQVIRKYYSLNPASKS 188 Query: 181 VSLKIDWIIERYQLPQ--------SYQRMPDFRRRFLQVCVNEINSRT---PMRLSYIEK 229 + +D + E L Y + F R + + EI +T ++ S Sbjct: 189 FEISVDQLKEEMGLYNIENGEKVYRYPKYSFFIRDVINKSIREIIEKTEIRDIKFSVA-G 247 Query: 230 KKGRQTTHIVFSFRDITSMTTG 251 KKGR + F F ++ Sbjct: 248 KKGRMVHMLRFDFSLNEDISLS 269 >UniRef50_A7HZC8 Putative RepE n=2 Tax=Campylobacter RepID=A7HZC8_CAMHC Length = 376 Score = 91.5 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 26/229 (11%) Query: 27 AAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQAL 86 A +L + + + + V + +++ ++ AE F + SK++ + + Sbjct: 42 AFKNLDKVEANLFFSIVARFNDKGAEK------LKLNFSEIAE-FISDNKYTSKELSKLI 94 Query: 87 KSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQN-R 145 GK V E + Y F F + IN + ++ Sbjct: 95 NDGVGKVVQSAIKWEMTPIKTAY--FTLFNEFLVDDENKTLEASINSRFLFMLNNFKDGN 152 Query: 146 FTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFR 205 FT L+E + + Y LY L Q+R +G S+K IE +P SY R D Sbjct: 153 FTMLELAEFSSLKSKYTQTLYRLLKQFR---FTGFRSIKWAEFIEIMDIPTSY-RARDID 208 Query: 206 RRFLQVCVNEINSRTPM---------RLSYIEKK---KGRQTTHIVFSF 242 ++ L+ + E+ + +L Y + + +GR I F F Sbjct: 209 KQILKPAIAELTQEADIFNQNNPIFKKLIYKKIRGTGRGRPVELIEFYF 257 >UniRef50_C8WG51 Initiator RepB protein n=1 Tax=Zymomonas mobilis subsp. mobilis NCIMB 11163 RepID=C8WG51_ZYMMN Length = 326 Score = 91.5 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 14/218 (6%) Query: 32 SRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAG 91 S ++ L + K + + I V++ +I G+ S ++ Q LK Sbjct: 37 SLAALKLYELLI----KYAAYNIDKNIWHNISVSEMQKIKGIK-NYNSTELTQLLKELRA 91 Query: 92 KEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVH--INPYLIPFFIGLQNRFTQF 149 + + A D +P G + + Sbjct: 92 VVMEY-----RAKDRTIITGLLDIAAVISNPDTGYLEIQWKFGESFRDLIAK-SEYWAIV 145 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ-SYQRMPDFRRRF 208 T E+T+ Y++RLYE L + + + + +P+ +R D R + Sbjct: 146 DYRTTLEMTSRYSLRLYEILALRINLKHKNSDTFTLAELRGKLGVPEGKLKRWSDLRDKA 205 Query: 209 LQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDIT 246 + V V EIN RT ++ KK GR + F + Sbjct: 206 INVAVKEINQRTTFAVTAQPKKMGRSVQAVEFKWERKE 243 >UniRef50_D2U4L0 Pi protein (Replication initiation protein) n=1 Tax=Arsenophonus nasoniae RepID=D2U4L0_9ENTR Length = 306 Score = 91.2 bits (225), Expect = 3e-17, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 88/274 (32%), Gaps = 28/274 (10%) Query: 2 AETAVINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 V+N ++ N+L SL K++L+L + QI + H I Sbjct: 4 KMRLVMNKTAVSRLTKVRHRNELNSTLSSLPMSAKKVLFLVLSQINTKNEFDDNH--IFY 61 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPE-----------EDAGDEKGYE 110 + Y + + A +++ + E + + Y Sbjct: 62 LTANDYVKWVNVNIDTAYCSLKEGAIILDNVLLKLKHEEIIELSDELQLPFTSKNAPDYI 121 Query: 111 SFPWFIKRAHSPSRGLYSVHINPYLIPFFIGL---QNRFTQFRLSETKEITNPYAMRLYE 167 + A+ + G + + L + ++T L ++++ A +Y+ Sbjct: 122 NLSLTEFSAYYKNEGKIGIRFTKSAKQYLCKLVGSEKKYTTQILLSVVKLSSVNASSIYQ 181 Query: 168 SL-CQYRKPDGSGIVSLKIDWIIERYQLPQ---------SYQRMPDFRRRFLQVCVNEIN 217 + + + I+ + + L SY P FRR L V EI Sbjct: 182 LIRKKISNNSRIKFFDISINELKDEMYLYDVDSKGRKVYSYPEYPFFRRDVLNKAVKEII 241 Query: 218 SRTPMR-LSYIEK-KKGRQTTHIVFSFRDITSMT 249 T ++ L + K GR+ I F+F T Sbjct: 242 KCTEIKDLKFEVIDKIGRKVNKIRFTFFIKEYDT 275 >UniRef50_O87353 Replication protein Rep n=2 Tax=Staphylococcus RepID=O87353_STAAU Length = 211 Score = 91.2 bits (225), Expect = 3e-17, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 5/139 (3%) Query: 105 DEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMR 164 E + F F K S + +P L + + FT+F L E + + Y+ Sbjct: 10 TETKIKKFVLFYKYEIDISEKYLEIATSPDLKYILNSITDNFTKFELKEMTHLKSTYSKN 69 Query: 165 LYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINS-RTPMR 223 ++ L QY+ +G + +KI+ ER +P+SY RM + + L + E++ + + Sbjct: 70 MFRLLKQYK---HTGYMKIKIEDFRERLDIPESY-RMSNINQFVLTPIIKELSPIFSNLN 125 Query: 224 LSYIEKKKGRQTTHIVFSF 242 ++ ++ KKGR+ + F+F Sbjct: 126 INKVKAKKGRKIEWLEFTF 144 >UniRef50_B9ECF4 Plasmid replication initiation protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9ECF4_MACCJ Length = 293 Score = 91.2 bits (225), Expect = 3e-17, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 15/239 (6%) Query: 15 SPRIVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + NDL ++++ + + ++++ E D + AE+ Sbjct: 3 NETVKYHNDLNTVPMRKWTKEEMDFFFSIISKLKEKGTREIEFDKY------QLAELARY 56 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFI-KRAHSPSRGLYSVHIN 132 T K + ++ + E + + F F S V + Sbjct: 57 TVTHN-KRFEETMERLVKNISQIHYIERTSNSLELMNLFSRFKVTWEDDLSDMTLVVKVT 115 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERY 192 LQ FT + L E I + YA +Y L Q+R G V K+D + Sbjct: 116 EEFNYVINKLQVEFTSWELEEFTSIRSTYAKTMYRLLKQWRTV---GKVEYKVDVFKQLL 172 Query: 193 QLPQSYQRMPDFRRRFLQVCVNEI-NSRTPMRL-SYIEKKKGRQTTHIVFSFRDITSMT 249 +P SY + + LQ + E+ + + +++ K+G F+F + T Sbjct: 173 DMP-SYYTPSEIDKNVLQPILKELPSFFSNLKIKKIKSNKRGTPVIAYEFTFSPEKTGT 230 >UniRef50_C6S581 Putative initiator RepB protein n=1 Tax=Neisseria meningitidis alpha14 RepID=C6S581_NEIML Length = 111 Score = 90.8 bits (224), Expect = 4e-17, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Query: 141 GLQNRFTQFRLSETKEITNPYAMRLYESLCQY-RKPDGSGIVSLKIDWIIERYQL-PQSY 198 ++ RFT + + + ++++ YAMRLYE QY K G G + + + + R+ L P Y Sbjct: 2 EIEKRFTVYEIEQVAQLSSGYAMRLYEFFMQYFDKQTGKGWLEVSLVDLRFRFGLLPNEY 61 Query: 199 QRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 R+ +F+ R + +NEIN +T + +Y ++K GR T F F Sbjct: 62 ARIGNFKTRVIDYSINEINKKTDLTATYEQRKNGRVITGFRFEFTRKQQ 110 >UniRef50_A2SMS0 Putative uncharacterized protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SMS0_METPP Length = 455 Score = 90.4 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%) Query: 31 LSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG---LTSAEASKDIRQALK 87 L+R + L + + DG +++ + +G S I Q Sbjct: 32 LTRTARMAYNLMIFIAQNMREDE---DGGYTAPMSEIVKGYGGTTRDSGRVRGYIEQMCT 88 Query: 88 SFAGKEVVFYRPEEDAGDEKGYE-------------SFPWFIKRAH--SPSRGLYSVHIN 132 + + R +E+ + + F + + + Sbjct: 89 TLV-RWFPLSRSDEEQANTQVTIAGLPDPPESAECRVFSLLSEARFTRRGGEQWLTWYFP 147 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRK-PDGSGIVSLKIDWIIER 191 P + + Q + E ++++ ++ L+E +Y+ P G + + W+ Sbjct: 148 PTIRETVVHPVRW-AQVDIQEMSQLSHYASVALFEICSRYKDVPGGLTNRAAPVFWVRAL 206 Query: 192 YQLPQ---SYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 P+ + F+ L+ + EIN +T + + IE +G+ T + FS R S+ Sbjct: 207 RGEPEERSKVREWRKFKNESLKPALAEINQKTSLNVELIEVLRGKTTVEVQFSVRRKPSV 266 >UniRef50_C9CGX5 Plasmid replication protein n=5 Tax=Enterococcus faecium RepID=C9CGX5_ENTFC Length = 245 Score = 90.0 bits (222), Expect = 6e-17, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 74/247 (29%), Gaps = 20/247 (8%) Query: 14 NSPRIVQSNDLTEA-AYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 ++ + +N L + + + ++++ + + E+ Sbjct: 2 SNDIVRYNNGLNSVPLRKFTPIDMDLFWGICSKMKRKGTKEE------IFTFKQIKELID 55 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 L + K + E DEK YE F K + ++ Sbjct: 56 YNINARGDRFANDLIKMSKKIITLSFIYE---DEKTYEQLNLFQKFKIDKVNETLLIKVS 112 Query: 133 PYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRK-PDGSGIVSLKIDWIIER 191 + FT+F L + + Y LY L ++ G +KI+ Sbjct: 113 EEFEYILNSIGTNFTRFELENMTNLKSSYVKELYRQLMAHKDRRSKKGHWFVKIEDFRAL 172 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNE-INSRTPM-----RLSYIEKK--KGRQTTHIVFSFR 243 +P+SY RM D ++ E +N + + K KG + + F Sbjct: 173 LAIPESY-RMRDIDKQIFAQAKKEFLNVNSTHPAIFKTFEIKKIKAYKGNKIGSLQIYFE 231 Query: 244 DITSMTT 250 + T Sbjct: 232 ENIPSIT 238 >UniRef50_A8UD54 Replication protein n=1 Tax=Carnobacterium sp. AT7 RepID=A8UD54_9LACT Length = 258 Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 86/236 (36%), Gaps = 17/236 (7%) Query: 15 SPRIVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGL 73 + + N L + ++ + ++ + + +++ ++ E + E+ Sbjct: 2 NEIVKYENSLNDVSFRKFNPNELDLFFSICSKLK------DKYTQEIEFSFEQLKELSNY 55 Query: 74 TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINP 133 + +++ + E + F F K + + IN Sbjct: 56 SPTS----VKRFMNDLDKTYTKMLGLTYGERTETRIKRFVLFTKFDINADTQTVKIGINN 111 Query: 134 YLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQ 193 F + FT+F L E EI + Y +Y L Q++ G+G ++ I+ Sbjct: 112 EF-EFLLNDFEMFTKFELREFTEINSSYTKTIYRKLKQFK---GTGFYTVSIEEFKRLLD 167 Query: 194 LPQSYQRMPDFRRRFLQVCVNEINS-RTPMRLSYIEKKKGRQTTHIVFSFRDITSM 248 +P+SY RM D RR L+ + E+ + + KKG + I F F + + Sbjct: 168 IPESY-RMYDIDRRILEKSIKELKPFFKSLSYKKEKAKKGNKIERISFIFEEKKQV 222 >UniRef50_A1VWH2 Initiator RepB protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWH2_POLNA Length = 471 Score = 88.5 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 74/226 (32%), Gaps = 16/226 (7%) Query: 21 SNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASK 80 +N E LS +R L + + + + E+ + + + +S+ K Sbjct: 39 NNIFVE-IEDLSLATRRALDAAYFIVSQKEAVCKT----YEVDLNFFQWLMAYSSSN-RK 92 Query: 81 DIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFI 140 R + + + D + + + +G ++ L Sbjct: 93 HFRALMVEAQKAVIQVQDTDPDDDQDDRWGAVQMLGAVKIY--KGKIVFEVHDSLQRAI- 149 Query: 141 GLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLP-QSYQ 199 +N + LS ++ +A L++ L G+ + I + ++Y Sbjct: 150 --KNPVSSHFLSLRLIFSSLHAKILHDRLLPVVTEGGTPW--IPIQELRRWLSCTTKTYD 205 Query: 200 RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKG--RQTTHIVFSFR 243 +R L+ + +INS + + +S + ++ + F + Sbjct: 206 EFKYIKRDVLEPAIKQINSLSSIAVSLDTRNLPGTKKIGEVRFRVK 251 >UniRef50_C5NND2 RepB initiator protein n=1 Tax=Photobacterium damselae subsp. piscicida RepID=C5NND2_PASPI Length = 254 Score = 88.5 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 80/218 (36%), Gaps = 24/218 (11%) Query: 30 SLSRDQKRMLYLFVDQI------------RKSDGTLQEHDGICEIHVAKYAEIFGLTSAE 77 SL ++ + L + +I + D + E + +F + Sbjct: 17 SLGAAEQDVFALVLCEISKVVGFNSTQIKQCDDFEKKPIPYQFEFSEEELTTLFQCSVDN 76 Query: 78 ASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 K I A KS +EV + E+G++ F + ++ + + + + P + Sbjct: 77 LRKTIEPAAKSLVKREVSYSS-------ERGFDVFSPIARARYNMGQPFF-IEMAPSVAE 128 Query: 138 FFI-GLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQ 196 ++ F++ ++ Y RL ++L Q++ V KI + L Sbjct: 129 LLAENVEAGFSEIDFKLFVSLSGRYERRLLKALSQWKHNPSK-EVKFKIQDYRDYIGLED 187 Query: 197 -SYQRMPDFRRRFLQVCVNEINSRT-PMRLSYIEKKKG 232 YQR R+ ++ +++I ++ + +KKG Sbjct: 188 GEYQRTEALVRKTIKKPISDIIEKSEGCWVPTDPEKKG 225 >UniRef50_O85801 Replication protein A n=8 Tax=Helicobacter pylori RepID=O85801_HELPY Length = 538 Score = 86.5 bits (213), Expect = 7e-16, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 15/150 (10%) Query: 112 FPWFIKRAHSPSR-----GLYSVHINPYLIPFFIGLQ-NRFTQFRLSETKEITNPYAMRL 165 + F + ++ + +N L ++T F L E + + YA L Sbjct: 34 YMLFSRCKIELNKPSKDLKYLEIQLNDNYQYLLNNLGMGQYTSFNLLEFQRVRGKYAKTL 93 Query: 166 YESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMR-L 224 Y L Q +GI+S++ E +P+ Y+ M + ++ L + E+ P L Sbjct: 94 YRLLRQ---SKSTGILSVEWTQFRELLDIPKDYK-MENIDQKVLTPSLKELRKIYPFEHL 149 Query: 225 SYIEKKKG----RQTTHIVFSFRDITSMTT 250 SY ++++ R+ THI F F + T Sbjct: 150 SYKKERRNSHDKRKVTHIDFYFEQLPQSET 179 >UniRef50_D1XZR3 Initiator RepB protein n=2 Tax=Prevotella RepID=D1XZR3_9BACT Length = 424 Score = 85.8 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 82/241 (34%), Gaps = 37/241 (15%) Query: 21 SNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTL----QEHDGICEIHVAKYAEIFGLTSA 76 +N + + + ++R LY + I+ + +++ ++ ++ + Sbjct: 22 NNLILRSPLRYTMMERRFLYKLSEAIKMRYEEMGLTMRDNWQNLIFNMTD-RDLASVGGN 80 Query: 77 EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLI 136 + ++S A K +V + ED + + F W + S Y+V ++P L Sbjct: 81 THVMRTYKTVRSLAQKAIVQFHENED--KQLVVDYFHWIDAFRWNTSTNDYTVRVSPELY 138 Query: 137 PFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQY------------RKPDGSGIVSLK 184 + I L FT L + + Y+ + YE C Y + ++ + Sbjct: 139 DYVINLTKSFTVLNLHTAILLESKYSQKFYEICCLYSGDFRYIDPTMLNETYKKRVLKMS 198 Query: 185 IDWIIERYQL-------------PQSYQRMPDFRRRFLQVCVNEI-----NSRTPMRLSY 226 ++ + L + YQR + + E+ N++ + + Sbjct: 199 VETFRFTFGLSELHDPKTGELLEKEKYQRFKTMVEKVILPAQRELYELYQNNQCDVWFDF 258 Query: 227 I 227 Sbjct: 259 E 259 >UniRef50_D0R6F1 Replication initiation protein n=1 Tax=Lactobacillus johnsonii FI9785 RepID=D0R6F1_LACJF Length = 447 Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 92/247 (37%), Gaps = 21/247 (8%) Query: 11 KRKNSPRIVQSNDLT-----EAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 +K S + NDL + + + Q+ L + D + +I ++ Sbjct: 16 NKKLSTIVKMDNDLLVKGFPNFSKKWTPFDIDWWNIIDSQV------LDQKDNLIKIPIS 69 Query: 66 KYAEIFGLTSA-EASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSR 124 K E+ + I+++ + + E++ GD+K Y + F + ++ + Sbjct: 70 KVKELMYFRKHITNDEFIKKSNDTLKKFMTIQASLEQEDGDKKIYMNVNIFSQ-SYIDTD 128 Query: 125 GLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLK 184 + ++P +F L T+F L + + Y+ +L+ L Q+R + Sbjct: 129 YNAWIRVSPQATKYFNNLSQW-TRFALEQATRLHTSYSKKLFMYLKQWRTVGKK---TFT 184 Query: 185 IDWIIERYQLPQSYQRMPDFRRRFLQVCVNEI---NSRTPMRLSYIEKKKGRQTTHIVFS 241 ++ +P+SY R ++ L + + +Y + +GR+ F+ Sbjct: 185 LEEFRNALDVPKSY-RPGSIDQKILNPTAEYLAPYFMNFRITKNYSKGIRGRKLIGYTFT 243 Query: 242 FRDITSM 248 FR + Sbjct: 244 FRPESKT 250 >UniRef50_C3X132 Putative uncharacterized protein n=1 Tax=Fusobacterium sp. 7_1 RepID=C3X132_9FUSO Length = 475 Score = 85.0 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 9/193 (4%) Query: 51 GTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYE 110 + + + I T+ + + S +EK Sbjct: 6 KVRDKKEDEVIFSFNELKNISNWTNKND----KDFIHSLEMTNKKLIELTFRFENEKEII 61 Query: 111 SFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLC 170 F F V +N L N F ++L + + + Y+ LY+ L Sbjct: 62 MFVLFPTFHIDKDEKTLKVAVNKKFAYLLNNLSNNFNWYQLKDFTSLNSKYSKLLYKELM 121 Query: 171 QYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKK 230 ++ +G KI+ ++ +P+ Y RM + +++ L + E + ++ K Sbjct: 122 LFKD---TGYRIFKIEDFRKKLDIPEKY-RMTNIKQKVLTP-IEEDFKHIFSKFEIVKIK 176 Query: 231 KGRQTTHIVFSFR 243 GR I F+F Sbjct: 177 NGRDIAQIRFNFT 189 >UniRef50_Q1WRF7 Replication protein n=2 Tax=Lactobacillus salivarius RepID=Q1WRF7_LACS1 Length = 254 Score = 84.2 bits (207), Expect = 4e-15, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 79/234 (33%), Gaps = 20/234 (8%) Query: 14 NSPRIVQSNDLTEAAYSL-SRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFG 72 N+ + N+L + ++ + + + Q++++ + + + A Sbjct: 17 NTKEVRYDNELNRIPIGFMNESEQNIFFAILSQVKETSERKTKLSFT---QIRELASFQK 73 Query: 73 LTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHIN 132 ++ E K + A V +++ F F ++ +V +N Sbjct: 74 TSNKELIKSLDNMTTKLASLNVRI-------HNQQQIIKFTLFPTFQIDGNQQTLTVAVN 126 Query: 133 PYLIPFFIGLQNRF-TQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER 191 L F T F + E I + YA + ++ + + + E Sbjct: 127 EDFRYIVNDLAKGFVTNFDIEEFTSIKSKYAKTAFRLAREHENE----VFDVVLKDFKEL 182 Query: 192 YQLPQSYQRMPDFRRRFLQVCVNEINS-RTPMRLSYIEKKKGR--QTTHIVFSF 242 + +P+SY R D R L + T ++ ++ +KG+ + F+ Sbjct: 183 FSIPKSY-RPTDINRLILTKVSKILQEYFTVFEITPVQDEKGKAHRIIAYRFNI 235 >UniRef50_B2JXX7 Putative uncharacterized protein n=1 Tax=Burkholderia phymatum STM815 RepID=B2JXX7_BURP8 Length = 468 Score = 83.5 bits (205), Expect = 6e-15, Method: Composition-based stats. Identities = 24/230 (10%), Positives = 75/230 (32%), Gaps = 7/230 (3%) Query: 21 SNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA-KYAEIFGLTSAEAS 79 N++ L +R+L + + D + Y + + Sbjct: 39 RNNIFTRVGGLGIAARRVLDAAYFIVATNSPDELVDDKVYTFTADVNYFKWLMRYDSRNH 98 Query: 80 KDIRQALKSFAGKEVVFYR--PEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIP 137 + +++ A V E+ ++ + + R + + ++ +I Sbjct: 99 SHLIAQMRAAAKARVEIMTAPSIEELTEKDSWGTISLLGDC--YIERNVVCILLSGRVIK 156 Query: 138 FFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQS 197 + I L + + A +Y+ L + + + + + ++ +S Sbjct: 157 YLISPYKAH-WLSLRASTAFSLSLARAIYDRLIPCEGHGVTEWFAYE-EVLEWPGKVGES 214 Query: 198 YQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITS 247 + + +F++RFL+ + ++N + +++ + + FR Sbjct: 215 RKEVKEFKKRFLEPAMLQLNEVSDFDVNWEPNTERTPPEKLKIRFRFTKK 264 >UniRef50_B9D168 Putative RepE replication protein n=1 Tax=Campylobacter rectus RM3267 RepID=B9D168_WOLRE Length = 260 Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 14/230 (6%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIF--GLTSAEASKDIRQALK 87 + + + + ++ E+ G ++ ++ A + G+ + +I+ + Sbjct: 31 NFTARDYDIFFTICWYAKEM--GYTENKGFIDMPYSELARFYEKGINKTRFNDEIKVFID 88 Query: 88 S-FAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRF 146 K YR D++ +F ++ + +N + G +F Sbjct: 89 KVLGRKGSAIYRSITHTEDDEILSVGVFFTDIDTFRNKQILRFRMNKRALDVLFG-TLKF 147 Query: 147 TQFRLSETKEITNPYAMRLYESLCQYRKPD----GSGIVSLKIDWIIERYQLPQSYQRMP 202 + L + I +A LY L QY G V+ P+ Y Sbjct: 148 MRINLYDFVAIRGKFAKTLYRLLQQYENIKPDKDGFKCVNFTRSDFENFMSAPECYGS-K 206 Query: 203 DFRRRFLQVCVNEINSRTPMRLSYIE---KKKGRQTTHIVFSFRDITSMT 249 D R +Q +NE+N +L + + K ++ F F Sbjct: 207 DLDCRVIQPSINELNESYFKKLIFEKQISNKNKKEVVGYSFKFILNEKTE 256 >UniRef50_D1ARP8 Initiator RepB protein n=2 Tax=Fusobacteriaceae RepID=D1ARP8_SEBTE Length = 403 Score = 80.8 bits (198), Expect = 4e-14, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 80/225 (35%), Gaps = 17/225 (7%) Query: 23 DLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDI 82 LS ++ + V I L + E+ + ++ L + Sbjct: 10 IFISFNKKLSSNENIIFKRIVKHI------LLNNTPYMELSENELNKLIKLDQNNN---L 60 Query: 83 RQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGL 142 + ++F K++++ + D +G ++I ++ Y + + F Sbjct: 61 KNFFENFMKKKILYSYNKLDYIKYEGM----FYIISSYRIINQKYYITFSEDFYKVFNKE 116 Query: 143 QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMP 202 N F ++ + + + + + L Q K + + + + + + ++ ++Y R Sbjct: 117 SNDFKVYKFNLLLQFNDSTSRNFFMMLTQ--KNILNNFIDISLTELKKILEIEKNYSRFY 174 Query: 203 DFRRRFLQVCVNEINSRTPMRLSYIEKK--KGRQTTHIVFSFRDI 245 DF + L + EI + + + Y + K R+ + +D Sbjct: 175 DFEKYILLPVIKEIKDISNIEIEYEKIKISNNRKIIGLRLYVKDR 219 >UniRef50_A1X019 RepE replication protein, putative n=1 Tax=Campylobacter jejuni subsp. jejuni 81-176 RepID=A1X019_CAMJJ Length = 278 Score = 80.4 bits (197), Expect = 5e-14, Method: Composition-based stats. Identities = 34/243 (13%), Positives = 74/243 (30%), Gaps = 17/243 (6%) Query: 10 KKRKNSPRIVQSNDLT-EAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYA 68 K K + +V NDL + + + ++ T + + + + Sbjct: 2 TKDKINNNLVYHNDLNCFTFKNFKAVDYNLFFTICYYASQNIKTSK-NIIPISLSFEQLR 60 Query: 69 EIFGL--TSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGL 126 + +++ + + D + Y +F + + Sbjct: 61 DFLPQEKNKKRFYENVVEFALKLNN--LKTSNLTLDNEGYRIYSVSSFFDEITVNEKEEK 118 Query: 127 YSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKID 186 I + + + +T L +I+N Y LY L Q++ G+G + + Sbjct: 119 IVFKIKEKWLDLIVNVVREYTILDLRNFCKISNKYTKNLYRYLSQWQ---GTGEFIIPFE 175 Query: 187 WIIERYQLPQSYQRMPDFRRRFLQVCV---NEINSRTPMRLSYIEKKK----GRQTTHIV 239 +P SY + +R + + E N + + K G Q T Sbjct: 176 KFNLLLDIPASY-DIDKIEQRIIFPSIKLFKENNYFKNLEYIKEKDKTKQGQGGQVTTFT 234 Query: 240 FSF 242 F+F Sbjct: 235 FTF 237 >UniRef50_Q46019 RepB protein n=1 Tax=Campylobacter coli RepID=Q46019_CAMCO Length = 253 Score = 80.0 bits (196), Expect = 7e-14, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 17/218 (7%) Query: 15 SPRIVQSNDLTEAAY-SLSRDQKRMLYLFVDQIRKSDGT-------LQEHDGICEIHVAK 66 S + +ND L Q M + + I K Sbjct: 2 SEIVKYNNDFNLLPMPELKAIQMDMFMAIISLTKDKKENTPFLKKFFNPDKRKIIIPQKK 61 Query: 67 YAEIFGLTSAEA-SKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 + E+ L ++ K+I A+ K F + DE+ +F F + Sbjct: 62 FIELCRLNDSKMDYKEIFFAIDDCLKKLCNFLVSYQ--KDERTIYNFVCFEEANIIADE- 118 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 + + I + FT F L+E E++ Y LY L Q+R +G + Sbjct: 119 -VHITLQSRFYDMIINKKFGFTAFELAEFAELSGKYTKTLYRLLKQFRT---TGKAYFEW 174 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMR 223 + ++P++Y+++ D +R L+ + E++ + Sbjct: 175 EEFCRIMKIPENYRQI-DIDQRILKPAIKELSKERNLF 211 >UniRef50_D1AFD6 Putative uncharacterized protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AFD6_SEBTE Length = 429 Score = 77.7 bits (190), Expect = 3e-13, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 96/256 (37%), Gaps = 16/256 (6%) Query: 1 MAETAVINHKKRKNSPRIVQSND-LTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGI 59 + + K K + Q D + +++ +K L +++I+ + E + Sbjct: 29 LTKLGEKMEKNSKKNQFFFQEYDIFIDFHKKINKREKFFLEFLIEKIKNNFENPNEKTLV 88 Query: 60 CEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRA 119 EI V +F + + ++ + + SF+ K +++ + + +G + + Sbjct: 89 FEIEV-----LFKVLNITEKEEFERFMNSFSEKRIIYKCKKFNLLTFEG----SLYPVAS 139 Query: 120 HSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSG 179 + + + I+ F +N F + + + +L+ L + + + Sbjct: 140 FEFNDEKFYIDISEKFYSIFSAEENNFKELYFDILLQFDSMIVKKLFLFLINNKSINDT- 198 Query: 180 IVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKK----GRQT 235 + + +++ E +L +Y R DF + L+ + +I TP+++ Y + K + Sbjct: 199 -LEVSEEYLKEYLELSNTYDRFYDFEKNVLKKSIAQIEKYTPLKIKYEKIKNKSYLNSKI 257 Query: 236 THIVFSFRDITSMTTG 251 I F D Sbjct: 258 VGIKFYIIDNVRSNLS 273 >UniRef50_A6DEU9 Putative uncharacterized protein n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DEU9_9PROT Length = 564 Score = 76.5 bits (187), Expect = 7e-13, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 73/233 (31%), Gaps = 31/233 (13%) Query: 45 QIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAG-KEVVFYRPEEDA 103 I K + +++ +IF K+I + K K + E+D Sbjct: 68 MIEKWKNNEFTKIISFYLSISELKKIFKDFKHLRKKEIYETFKELEEIKLIKINLLEKDT 127 Query: 104 GDE-------------------KGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQN 144 E + + + S ++ P + + + Sbjct: 128 KKEIIIQSNSNKIPNDIDFDQVTSVDIIRIISNVKIDYTNDIVSFYLPPISLAYLVA-PK 186 Query: 145 RFTQFRLSETKEITNPYAMRLYESLCQY--------RKPDGSGIVSLKIDWIIERYQLPQ 196 +T L +++ Y++ L+E L + + D + + + + Sbjct: 187 MYTNLNLLILNYLSSSYSITLFEFLHDFYENQKRFNQNKDFFETGKISLTKLRQILGAYN 246 Query: 197 SYQRMPDFRRRFLQVCVNEINSRT--PMRLSYIEKKKGRQTTHIVFSFRDITS 247 Y R DF++ L + E+N P + + E KKG++ I F D Sbjct: 247 KYSRYTDFKKWVLNPAIKELNKSDVVPFFIEFQEIKKGKKVEWINFIMEDKPE 299 >UniRef50_D1AQA4 Putative uncharacterized protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQA4_SEBTE Length = 393 Score = 76.5 bits (187), Expect = 8e-13, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 73/222 (32%), Gaps = 18/222 (8%) Query: 30 SLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSF 89 + S+++K+ L + + I + Sbjct: 25 NFSKNEKKFLEILYFN-------FDSDSLYLFFDTENLKKALNYKDDS---QIPVFFEKL 74 Query: 90 AGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQF 149 K++ + E D G+ S ++ + ++ L F N F+ + Sbjct: 75 MSKKIRYTISENDDILYSGFFSI----INSYFHGNNKTGISVSQELKMSFRE-NNFFSCY 129 Query: 150 RLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFL 209 + + P +++LYE + +SL + + + L +Y R DF + L Sbjct: 130 NFEKYIFMEEPASLKLYEYI---NSTAPRDFLSLSLTELKDILGLKDAYVRFFDFEKYIL 186 Query: 210 QVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTTG 251 + + +IN + +++ Y K + F+ + + T Sbjct: 187 KKIIKDINLFSDIKIEYQRHKSSNTLINFFFTKNENSIYNTS 228 >UniRef50_UPI0001742AD8 putative RepE n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742AD8 Length = 203 Score = 76.1 bits (186), Expect = 9e-13, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Query: 127 YSVHINPYLIPFFIGL-QNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 ++ ++ +T+F L E + + Y Y + Q+R +G S+ + Sbjct: 1 MTIAVSERFKFLLNEFEPGNWTRFELEEFVRLKSSYTKEFYRRMKQFR---STGFWSVNL 57 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR---QTTHIVFSF 242 D +P +Y RM D + L+ E+ + +++ KGR + +F+F Sbjct: 58 DEFKRLMDIPVNY-RMCDIDVKVLKPIQKELKEKYGLKIQKTYNTKGRGRPAVSGFIFTF 116 >UniRef50_D0GP72 Initiator RepB protein n=2 Tax=Leptotrichia goodfellowii F0264 RepID=D0GP72_9FUSO Length = 406 Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 18/236 (7%) Query: 20 QSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEAS 79 Q N E + +++++K L L +I L +I + + + +S Sbjct: 15 QKNINLEFSKKITKNEKTFLKLIFFKIISDFSLL----ENMKIKLEELSNNTEFSSITDY 70 Query: 80 KDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFF 139 +K+ + K + F E + FI + + F Sbjct: 71 SL---FIKNLSEKRIFFSVSSSSEKYEGSFGIISSFI-----LNIDSVLLFFTEEFKSCF 122 Query: 140 IGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQ 199 +N F+ + + ++ ++ LY ++ + + S + L I + Y Sbjct: 123 SNKKNFFSLLEIEKFIFMSESFSFSLYNNIL--KNFENSKEIILPISSLKMYLNSDNKYS 180 Query: 200 RMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKG----RQTTHIVFSFRDITSMTTG 251 R DF + L+ V++IN T +SY + K+G + T I F M T Sbjct: 181 RFFDFEKYILKKAVSDINIFTTFNISYKKIKEGTKLTNKITSITFFVEKSKHMNTS 236 >UniRef50_Q4A151 Putative replication protein RepA n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q4A151_STAS1 Length = 170 Score = 74.2 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 4/169 (2%) Query: 82 IRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIG 141 + + L+ ++ + K F K S+ +NP + Sbjct: 1 MNRTLQILLKRQKSLNFSVYSEFESKQLSMFND-DKTMIDFEGKKLSITLNPDFVYLLNN 59 Query: 142 LQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRM 201 F +S+ + + Y+ LY +Y+ + I+ E + Y M Sbjct: 60 FDENSICFSMSDFTNLKSIYSKHLYRLFTEYQDES---TYTFSIEAFREFLDINSKYPHM 116 Query: 202 PDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDITSMTT 250 D + L++ E+N + ++ T I F+F + + T Sbjct: 117 KDIDKPVLRMIKEELNQFYQYFEYKKVLEMPQRVTEIKFNFIKVKNSCT 165 >UniRef50_D1AQC9 Initiator RepB protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQC9_SEBTE Length = 398 Score = 74.2 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 39/248 (15%), Positives = 92/248 (37%), Gaps = 18/248 (7%) Query: 6 VINHKKRKNSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVA 65 ++N + + + N SL++ +K+ L G + +++ Sbjct: 1 MLNIYNSQQFNFLKKHNFSVFTNKSLNKKEKKFLKTLYISC----GIIDKNNSEISYKTE 56 Query: 66 KYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHSPSRG 125 I + + + L + K V + E D K ++ + I ++S +G Sbjct: 57 DILSILNYD---SIARLEKFLNNIISKRVFYRIEE----DNKLLQNGSFGIINSYSVYKG 109 Query: 126 LYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKI 185 ++ ++ F+ + F+ ++ + + ++ LY L V++++ Sbjct: 110 KVYFLLSEEILLSFVE-KTLFSYLKIDKFIFMEENFSYNLYLYLIPL--FYNQKEVNIEL 166 Query: 186 DWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGR----QTTHIVFS 241 D + SY+R DF + L+ + +I + + LSY + K G+ + T I F Sbjct: 167 DKLKNILNAETSYERFYDFEKYILKKAIEDIVTFSKYNLSYYKMKTGKNINNKVTAIKFI 226 Query: 242 FRDITSMT 249 + Sbjct: 227 LNNKKPGN 234 >UniRef50_P72243 ORF1 n=1 Tax=Prevotella ruminicola RepID=P72243_PRERU Length = 246 Score = 73.1 bits (178), Expect = 9e-12, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 71/220 (32%), Gaps = 37/220 (16%) Query: 44 DQIRKSDGTLQEHDGICEIHVAKYAEI------FGLTSAEASKDIRQALKSFAGKEVVFY 97 Q K + ++ FG+ A +++AL++ G+ V Sbjct: 17 YQAIKDQVSPNLFGEHDRFTLSPLLNYDITNSEFGIDKEHAY-TVKRALRAIMGEPFVI- 74 Query: 98 RPEEDAGDEKGYESFPWFIKRAHSPSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEI 157 E + P + ++++ ++ ++ ++ L N + ++ + Sbjct: 75 --SGSMKGNAAVELIAPISYVKYDPDKEVFNIQLSELIVNHYLEL-NVYDRYSPLIARSF 131 Query: 158 TNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIERYQL-----------PQSYQRMPDFRR 206 Y R YE C++RK G + D I + L Y+ D + Sbjct: 132 DGQYTPRFYEWACRWRK---QGFYDIDYDNIRTEFWLNAYTDDKGKKHKAKYRDNGDIMK 188 Query: 207 RFLQVCVNEI-----NSRTPMRLSYIEK-------KKGRQ 234 + + ++EI N L E ++GR Sbjct: 189 KIIMPSLDEIRQAVQNGTCDFWLRLEELPDNPQVGRRGRP 228 >UniRef50_Q4VGL8 Putative Rep n=1 Tax=Campylobacter coli RepID=Q4VGL8_CAMCO Length = 257 Score = 72.7 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 21/242 (8%) Query: 3 ETAVINHKKRKNSPRIVQSNDLT-EAAYSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICE 61 + + ++RK SND + ++++ + K D + + + I Sbjct: 8 KRQLEKLEQRKIQTHQKISNDFIDNTISKNNLVCLKVMFYLSTVLEKEDLSTFDDENIMC 67 Query: 62 IHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYRPEEDAGDEKGYESFPWFIKRAHS 121 + V + + S KDIR LK + F +E+ E Sbjct: 68 VFVDTKQMLEYIGSNV--KDIRNNLKQMQETSISFVDEKEN-----IVEGMNLLPLFKIE 120 Query: 122 PSRGLYSVHINPYLIPFFIGLQNRFTQFRLSETKEITNPYAMR----LYESLCQYRKPDG 177 + +H+ + +G+ +T +I N +R LYE + Y K G Sbjct: 121 YGKNRTEIHLFKRIANMIVGVSKNYTFLNTKLLMDIKNKNTLRMAPLLYE-INGYDKHTG 179 Query: 178 SGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIE-----KKKG 232 + +D + + + +Y+R+ D + LQ E++ + + +Y K G Sbjct: 180 KRKR-MDLDALNDFFG--TTYKRIIDIEKNILQPVKKELDLVSKLSFTYQVNFDTLNKVG 236 Query: 233 RQ 234 R Sbjct: 237 RP 238 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.146 0.355 Lambda K H 0.267 0.0444 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,440,283,599 Number of Sequences: 3077464 Number of extensions: 61096095 Number of successful extensions: 214282 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 555 Number of HSP's successfully gapped in prelim test: 409 Number of HSP's that attempted gapping in prelim test: 212032 Number of HSP's gapped (non-prelim): 1188 length of query: 251 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 125 effective length of database: 652,635,892 effective search space: 81579486500 effective search space used: 81579486500 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 92 (39.9 bits)