18/01/2012 11:36:55 : INFO  : Run start: Wed Jan 18 11:36:53 GMT 2012
18/01/2012 11:37:05 : INFO  : Initialised job
18/01/2012 11:37:08 : INFO  : Renaming log file 'phyre2_20120118_113652.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/d5ba5a3d4429c50a/phyre_20120118_113652.log'
18/01/2012 11:37:11 : INFO  : Initialised job:
Sequence
>batch____
MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQAL
ADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPK
PVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKA
REIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADC
DGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSKFKRNP

18/01/2012 11:37:13 : INFO  : Checked sequence
18/01/2012 11:37:19 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 11:37:21 : INFO  : PSI-BLAST 3 iterations
18/01/2012 11:40:04 : INFO  : PSI-BLAST 5 iterations
18/01/2012 11:43:55 : INFO  : Finished PSI-BLAST
18/01/2012 11:44:00 : INFO  : Running Buildali to generate a3m file
18/01/2012 12:14:37 : INFO  : Converting to HMM
18/01/2012 12:14:44 : INFO  : Calibrating HMM
18/01/2012 12:15:08 : INFO  : Searching HMM database
18/01/2012 12:22:25 : INFO  : Finished buildali
18/01/2012 12:22:29 : INFO  : Predicting secondary structure
18/01/2012 12:22:47 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 12:22:51 : INFO  : Predicting Disordered regions
18/01/2012 12:23:01 : INFO  : Predicted Disorder (Disopred)
18/01/2012 12:23:05 : INFO  : Running memsat_svm check
18/01/2012 12:28:40 : INFO  : Running memsat_svm full
18/01/2012 12:37:39 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd5ba5a3d4429c50a'
18/01/2012 12:37:42 : INFO  : Initialising fold library search
18/01/2012 12:37:49 : INFO  : Initialised search input
18/01/2012 12:37:54 : INFO  : Building Ensemble models
18/01/2012 12:38:01 : INFO  : Building hh.c2iexA_.model.1.pdb
18/01/2012 12:38:35 : INFO  : Building hh.c3h02F_.model.2.pdb
18/01/2012 12:39:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d5ba5a3d4429c50a/hh.c3h02F_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d5ba5a3d4429c50a/c3h02F_.44.pdb
18/01/2012 12:39:11 : INFO  : Building c2iexA_.1.pdb
18/01/2012 12:39:41 : INFO  : Building c3g64A_.2.pdb
18/01/2012 12:40:15 : INFO  : Building c3moyA_.3.pdb
18/01/2012 12:40:49 : INFO  : Building c3kqfC_.4.pdb
18/01/2012 12:41:24 : INFO  : Building d1wz8a1.5.pdb
18/01/2012 12:41:56 : INFO  : Building d1q52a_.6.pdb
18/01/2012 12:42:28 : INFO  : Building c3r0oA_.7.pdb
18/01/2012 12:42:59 : INFO  : Building c3bptA_.8.pdb
18/01/2012 12:43:33 : INFO  : Building c3i47A_.9.pdb
18/01/2012 12:44:04 : INFO  : Building c3h81A_.10.pdb
18/01/2012 12:44:36 : INFO  : Building c2qq3F_.11.pdb
18/01/2012 12:45:08 : INFO  : Building d1dcia_.12.pdb
18/01/2012 12:45:40 : INFO  : Building c2vx2D_.13.pdb
18/01/2012 12:46:12 : INFO  : Building c2hw5F_.14.pdb
18/01/2012 12:46:44 : INFO  : Building d1nzya_.15.pdb
18/01/2012 12:47:16 : INFO  : Building c3mybA_.16.pdb
18/01/2012 12:47:49 : INFO  : Building d1hzda_.17.pdb
18/01/2012 12:48:21 : INFO  : Building c2ej5B_.18.pdb
18/01/2012 12:48:53 : INFO  : Building c3p5mB_.19.pdb
18/01/2012 12:49:26 : INFO  : Building c3hrxD_.20.pdb
18/01/2012 12:51:10 : INFO  : Finished HH model building
18/01/2012 12:51:14 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 12:52:35 : INFO  : html domain output complete ID 'd5ba5a3d4429c50a'
18/01/2012 14:07:17 : INFO  : Run end  : Wed Jan 18 14:07:15 GMT 2012
