BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (96 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P68662 Uncharacterized protein ybcO n=57 Tax=root RepID...   198   4e-50
UniRef50_B4ESM1 Phage protein n=32 Tax=root RepID=B4ESM1_PROMH        131   7e-30
UniRef50_D0FSB7 Conserved bacteriophage protein n=3 Tax=Enteroba...   115   4e-25
UniRef50_UPI0001AF4584 hypothetical protein Psyrpo1_28777 n=2 Ta...    78   1e-13
UniRef50_Q1GIK2 Putative uncharacterized protein n=1 Tax=Ruegeri...    75   8e-13
UniRef50_A2P365 Gp66 n=1 Tax=Vibrio cholerae 1587 RepID=A2P365_V...    67   2e-10
UniRef50_D0Z7P2 Putative uncharacterized protein n=3 Tax=Enterob...    65   8e-10
UniRef50_A6F0L5 Putative uncharacterized protein n=2 Tax=root Re...    53   4e-06
UniRef50_A4JWC7 Putative uncharacterized protein n=1 Tax=Burkhol...    45   5e-04
UniRef50_C5CJN8 Putative uncharacterized protein n=1 Tax=Variovo...    42   0.007

>UniRef50_P68662 Uncharacterized protein ybcO n=57 Tax=root RepID=YBCO_BP82
          Length = 96

 Score =  198 bits (504), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60
          MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE
Sbjct: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60

Query: 61 IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA 96
          IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
Sbjct: 61 IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA 96


>UniRef50_B4ESM1 Phage protein n=32 Tax=root RepID=B4ESM1_PROMH
          Length = 96

 Score =  131 bits (329), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 70/95 (73%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60
          M +LR  A+GRECQ+RIP VCNGN ET VLAH R++GLCG G K  DL    ACSACHDE
Sbjct: 1  MMNLRNEAKGRECQIRIPSVCNGNSETVVLAHYRMSGLCGAGIKSHDLFGAWACSACHDE 60

Query: 61 IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIK 95
          +DRRT F D  YAK+C LEG+ RTQ I ++EG + 
Sbjct: 61 VDRRTRFTDMEYAKQCHLEGVLRTQAILIQEGKLN 95


>UniRef50_D0FSB7 Conserved bacteriophage protein n=3 Tax=Enterobacteriaceae
           RepID=D0FSB7_ERWPY
          Length = 159

 Score =  115 bits (288), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/94 (61%), Positives = 65/94 (69%), Gaps = 2/94 (2%)

Query: 3   DLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEID 62
           DLRK ARGRECQVRIPG CNGNPET VLAH R+ G CGTG KP D  A IAC+ CHD ID
Sbjct: 66  DLRKKARGRECQVRIPGYCNGNPETCVLAHYRMAGTCGTGYKPDDQQAAIACNGCHDAID 125

Query: 63  RRTHFVDAGYAKECAL--EGMARTQVIWLKEGVI 94
            RT   D  + +   +  EG+ RTQ IW +EG I
Sbjct: 126 GRTKTTDYTHDELRLMHAEGVLRTQAIWRREGFI 159


>UniRef50_UPI0001AF4584 hypothetical protein Psyrpo1_28777 n=2 Tax=Pseudomonas syringae
           group RepID=UPI0001AF4584
          Length = 101

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 4   LRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDR 63
           L  AAR RECQ+R PG C+    T+VLAH RL G CG G KP DL A  AC+ CHD  D 
Sbjct: 7   LTNAARDRECQIRYPG-CSSESSTTVLAHYRLAGTCGMGIKPNDLQAAWACAYCHDIADG 65

Query: 64  RTHFVDAGYAKECAL---EGMARTQVIWLKEGVIK 95
           R         +E  L   EG+ RTQ   ++EG++K
Sbjct: 66  RLRAPAVLSREEVRLFHAEGVMRTQDALIREGMVK 100


>UniRef50_Q1GIK2 Putative uncharacterized protein n=1 Tax=Ruegeria sp. TM1040
          RepID=Q1GIK2_SILST
          Length = 101

 Score = 74.7 bits (182), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60
          M  LR AA+G+ C +R+P  CN NPET+ L HIR  G  GT  KP D +A  ACS CHD 
Sbjct: 8  MTKLRTAAKGQPCTLRLP-CCNNNPETTSLCHIRAFGWAGTSEKPMDFLAVFACSDCHDA 66

Query: 61 IDRR 64
          +DRR
Sbjct: 67 LDRR 70


>UniRef50_A2P365 Gp66 n=1 Tax=Vibrio cholerae 1587 RepID=A2P365_VIBCH
          Length = 95

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 6/91 (6%)

Query: 4  LRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDR 63
          + ++ARG++C +R+ G+CN NPET+V AH+ +    G G K  D +   ACSACH EID 
Sbjct: 8  IMQSARGKQCTLRLVGICNFNPETTVAAHVGVRR--GMGIKCGDNMVVYACSACHAEIDS 65

Query: 64 RTHFVDAGYAKECALEGMARTQVIWLKEGVI 94
           +      YA +  L G+  TQ I ++EG+ 
Sbjct: 66 SSR---ESYAAD-KLRGIEETQEILVEEGLF 92


>UniRef50_D0Z7P2 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae
          RepID=D0Z7P2_EDWTE
          Length = 100

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 4  LRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDR 63
           R++ARG+ C ++IPG+CNG+P+T VL H+  + + G G K  D  A   CSACHD +D 
Sbjct: 12 WRESARGQGCTLQIPGICNGDPQTVVLCHLP-SPMHGMGYKSDDFWAVYGCSACHDALDG 70

Query: 64 RTHF 67
          R  +
Sbjct: 71 RAPY 74


>UniRef50_A6F0L5 Putative uncharacterized protein n=2 Tax=root RepID=A6F0L5_9ALTE
          Length = 110

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 4  LRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDR 63
          +R AARG+ C ++I GVC+G+  T+VLAH+      G   K  DL A  AC ACH  ID 
Sbjct: 13 IRDAARGQPCTLQIVGVCSGDWSTTVLAHLPDESH-GIARKSDDLSACFACDACHSVIDG 71

Query: 64 RTHF 67
          R  +
Sbjct: 72 RAKW 75


>UniRef50_A4JWC7 Putative uncharacterized protein n=1 Tax=Burkholderia
          vietnamiensis G4 RepID=A4JWC7_BURVG
          Length = 190

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIR-LTGLCGTGTK--PPDLIATIACSAC 57
          M+ +  +ARG  C +R+PGVCN +PET+V AH   + G    G K    D I   AC +C
Sbjct: 1  MSKITDSARGETCALRLPGVCNRDPETTVWAHGNDVEGGKAKGKKLLRYDHIGCYACYSC 60

Query: 58 HDEID 62
          H  +D
Sbjct: 61 HMVLD 65


>UniRef50_C5CJN8 Putative uncharacterized protein n=1 Tax=Variovorax paradoxus S110
           RepID=C5CJN8_VARPS
          Length = 164

 Score = 41.6 bits (96), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 4   LRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGT--GTKPPDLIATIACSACHDEI 61
           L   ARG+ C +R+  VCN +P T V AH  L G+ G     K  D     ACSACH  +
Sbjct: 45  LLSMARGQSCVLRVEEVCNRDPATVVAAHSNL-GIHGKAGARKADDQYHVHACSACHQWL 103

Query: 62  DR 63
           D+
Sbjct: 104 DQ 105


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_B4ESM1 Phage protein n=32 Tax=root RepID=B4ESM1_PROMH        142   2e-33
UniRef50_P68662 Uncharacterized protein ybcO n=57 Tax=root RepID...   142   3e-33
UniRef50_D0FSB7 Conserved bacteriophage protein n=3 Tax=Enteroba...   137   9e-32
UniRef50_UPI0001AF4584 hypothetical protein Psyrpo1_28777 n=2 Ta...   119   4e-26
UniRef50_A2P365 Gp66 n=1 Tax=Vibrio cholerae 1587 RepID=A2P365_V...   106   2e-22
UniRef50_D0Z7P2 Putative uncharacterized protein n=3 Tax=Enterob...   100   2e-20
UniRef50_A6F0L5 Putative uncharacterized protein n=2 Tax=root Re...    98   1e-19
UniRef50_Q1GIK2 Putative uncharacterized protein n=1 Tax=Ruegeri...    95   6e-19
UniRef50_A4JWC7 Putative uncharacterized protein n=1 Tax=Burkhol...    92   7e-18

Sequences not found previously or not previously below threshold:

UniRef50_C9D3I7 Putative uncharacterized protein n=1 Tax=Silicib...    65   8e-10
UniRef50_C5CJN8 Putative uncharacterized protein n=1 Tax=Variovo...    57   1e-07
UniRef50_Q7WLR3 Putative uncharacterized protein n=1 Tax=Bordete...    56   4e-07
UniRef50_D1DIA9 Predicted protein n=16 Tax=Neisseria gonorrhoeae...    48   8e-05
UniRef50_Q7WKA2 Putative uncharacterized protein n=2 Tax=Bordete...    40   0.025
UniRef50_Q2T6G6 Gp74 n=13 Tax=root RepID=Q2T6G6_BURTA                  39   0.049

>UniRef50_B4ESM1 Phage protein n=32 Tax=root RepID=B4ESM1_PROMH
          Length = 96

 Score =  142 bits (359), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/95 (62%), Positives = 70/95 (73%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60
          M +LR  A+GRECQ+RIP VCNGN ET VLAH R++GLCG G K  DL    ACSACHDE
Sbjct: 1  MMNLRNEAKGRECQIRIPSVCNGNSETVVLAHYRMSGLCGAGIKSHDLFGAWACSACHDE 60

Query: 61 IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIK 95
          +DRRT F D  YAK+C LEG+ RTQ I ++EG + 
Sbjct: 61 VDRRTRFTDMEYAKQCHLEGVLRTQAILIQEGKLN 95


>UniRef50_P68662 Uncharacterized protein ybcO n=57 Tax=root RepID=YBCO_BP82
          Length = 96

 Score =  142 bits (358), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60
          MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE
Sbjct: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60

Query: 61 IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA 96
          IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
Sbjct: 61 IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA 96


>UniRef50_D0FSB7 Conserved bacteriophage protein n=3 Tax=Enterobacteriaceae
           RepID=D0FSB7_ERWPY
          Length = 159

 Score =  137 bits (346), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 65/94 (69%), Gaps = 2/94 (2%)

Query: 3   DLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEID 62
           DLRK ARGRECQVRIPG CNGNPET VLAH R+ G CGTG KP D  A IAC+ CHD ID
Sbjct: 66  DLRKKARGRECQVRIPGYCNGNPETCVLAHYRMAGTCGTGYKPDDQQAAIACNGCHDAID 125

Query: 63  RRTHFVDAGYAKECAL--EGMARTQVIWLKEGVI 94
            RT   D  + +   +  EG+ RTQ IW +EG I
Sbjct: 126 GRTKTTDYTHDELRLMHAEGVLRTQAIWRREGFI 159


>UniRef50_UPI0001AF4584 hypothetical protein Psyrpo1_28777 n=2 Tax=Pseudomonas syringae
           group RepID=UPI0001AF4584
          Length = 101

 Score =  119 bits (297), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/97 (46%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 2   ADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEI 61
             L  AAR RECQ+R PG C+    T+VLAH RL G CG G KP DL A  AC+ CHD  
Sbjct: 5   TKLTNAARDRECQIRYPG-CSSESSTTVLAHYRLAGTCGMGIKPNDLQAAWACAYCHDIA 63

Query: 62  DRRTHFVDAGYAKECAL---EGMARTQVIWLKEGVIK 95
           D R         +E  L   EG+ RTQ   ++EG++K
Sbjct: 64  DGRLRAPAVLSREEVRLFHAEGVMRTQDALIREGMVK 100


>UniRef50_A2P365 Gp66 n=1 Tax=Vibrio cholerae 1587 RepID=A2P365_VIBCH
          Length = 95

 Score =  106 bits (264), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 6/92 (6%)

Query: 3  DLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEID 62
           + ++ARG++C +R+ G+CN NPET+V AH+ +    G G K  D +   ACSACH EID
Sbjct: 7  KIMQSARGKQCTLRLVGICNFNPETTVAAHVGVRR--GMGIKCGDNMVVYACSACHAEID 64

Query: 63 RRTHFVDAGYAKECALEGMARTQVIWLKEGVI 94
            +      YA +  L G+  TQ I ++EG+ 
Sbjct: 65 SSSR---ESYAAD-KLRGIEETQEILVEEGLF 92


>UniRef50_D0Z7P2 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae
          RepID=D0Z7P2_EDWTE
          Length = 100

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 4  LRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDR 63
           R++ARG+ C ++IPG+CNG+P+T VL H+  + + G G K  D  A   CSACHD +D 
Sbjct: 12 WRESARGQGCTLQIPGICNGDPQTVVLCHLP-SPMHGMGYKSDDFWAVYGCSACHDALDG 70

Query: 64 RTHF 67
          R  +
Sbjct: 71 RAPY 74


>UniRef50_A6F0L5 Putative uncharacterized protein n=2 Tax=root RepID=A6F0L5_9ALTE
          Length = 110

 Score = 97.9 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 3   DLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEID 62
            +R AARG+ C ++I GVC+G+  T+VLAH+      G   K  DL A  AC ACH  ID
Sbjct: 12  KIRDAARGQPCTLQIVGVCSGDWSTTVLAHLPDES-HGIARKSDDLSACFACDACHSVID 70

Query: 63  RRTHFVDA--GYAKECALEGMARTQVIWLKEGVIK 95
            R  +      + +        RT     ++ +  
Sbjct: 71  GRAKWPAMEREHKEWYFRRAQIRTWRALFEKNIFS 105


>UniRef50_Q1GIK2 Putative uncharacterized protein n=1 Tax=Ruegeria sp. TM1040
          RepID=Q1GIK2_SILST
          Length = 101

 Score = 95.2 bits (235), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60
          M  LR AA+G+ C +R+P  CN NPET+ L HIR  G  GT  KP D +A  ACS CHD 
Sbjct: 8  MTKLRTAAKGQPCTLRLP-CCNNNPETTSLCHIRAFGWAGTSEKPMDFLAVFACSDCHDA 66

Query: 61 IDRR 64
          +DRR
Sbjct: 67 LDRR 70


>UniRef50_A4JWC7 Putative uncharacterized protein n=1 Tax=Burkholderia
          vietnamiensis G4 RepID=A4JWC7_BURVG
          Length = 190

 Score = 91.7 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIR-LTGLCGTGTK--PPDLIATIACSAC 57
          M+ +  +ARG  C +R+PGVCN +PET+V AH   + G    G K    D I   AC +C
Sbjct: 1  MSKITDSARGETCALRLPGVCNRDPETTVWAHGNDVEGGKAKGKKLLRYDHIGCYACYSC 60

Query: 58 HDEIDRRTHFVDAGYAKECA 77
          H  +D +         ++  
Sbjct: 61 HMVLDGQAKRPAHLALEQVR 80


>UniRef50_C9D3I7 Putative uncharacterized protein n=1 Tax=Silicibacter sp. TrichCH4B
           RepID=C9D3I7_9RHOB
          Length = 125

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 14/103 (13%)

Query: 4   LRKAARGRECQVRIPGV-----CNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACH 58
           + +AA G  C +RI        C+G PET+V  H+ + G  G  TK  D+     C+ CH
Sbjct: 17  IMRAAEGSPCTLRIASFIAGKKCSG-PETTVACHLPVWG-KGVSTKVTDMATAFGCATCH 74

Query: 59  DEIDR----RTHFVDAGYAK---ECALEGMARTQVIWLKEGVI 94
             +D        +++  Y     E  L G+  T  + ++ GVI
Sbjct: 75  AILDGIDQDARRYLEHHYKNAVLERMLHGLTETHALLIQRGVI 117


>UniRef50_C5CJN8 Putative uncharacterized protein n=1 Tax=Variovorax paradoxus S110
           RepID=C5CJN8_VARPS
          Length = 164

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 4   LRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGT--GTKPPDLIATIACSACHDEI 61
           L   ARG+ C +R+  VCN +P T V AH  L G+ G     K  D     ACSACH  +
Sbjct: 45  LLSMARGQSCVLRVEEVCNRDPATVVAAHSNL-GIHGKAGARKADDQYHVHACSACHQWL 103

Query: 62  D 62
           D
Sbjct: 104 D 104


>UniRef50_Q7WLR3 Putative uncharacterized protein n=1 Tax=Bordetella bronchiseptica
           RepID=Q7WLR3_BORBR
          Length = 164

 Score = 55.9 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 8   ARGRECQVRIPGVCNGNPETSVLAHI-RLTGLCGTGTKPPDLIATIACSACHDEID 62
           A G  C +R+P  C G  +++V  H  RL    G G K  D      CS CH  ID
Sbjct: 61  AEGENCLLRVPKYCQGGTDSTVACHSNRLRDGKGKGIKAHDWAIAFGCSGCHWFID 116


>UniRef50_D1DIA9 Predicted protein n=16 Tax=Neisseria gonorrhoeae RepID=D1DIA9_NEIGO
          Length = 116

 Score = 48.2 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 2   ADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEI 61
           + +RKAA+G +C   I GVCN NPET VL         G G K   L A   C      I
Sbjct: 18  SAIRKAAKGGQCTPNIAGVCNDNPETVVLCRFPGE-THGAGLKSGGLGAGFGCGCRRGAI 76

Query: 62  DRR----THFVDAGYAKECALEGMARTQVI 87
           D R    +      Y +   L  + R + +
Sbjct: 77  DGRGAGLSREDKEFYMRRSQLRTIRRLEAL 106


>UniRef50_Q7WKA2 Putative uncharacterized protein n=2 Tax=Bordetella bronchiseptica
           RepID=Q7WKA2_BORBR
          Length = 138

 Score = 40.1 bits (92), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 7   AARGRECQVRIPGVCN--GNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDRR 64
           A RG  C  +  G C+  G+P T V AH       GTG K PD     AC  CH   D+ 
Sbjct: 45  ACRGERCYQQFAGCCSYKGDP-TVVPAHQNQ--GKGTGLKVPDRFTVPACYHCHTLYDQS 101


>UniRef50_Q2T6G6 Gp74 n=13 Tax=root RepID=Q2T6G6_BURTA
          Length = 151

 Score = 38.9 bits (89), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 2   ADLRKAARGRECQVRIPGVCNG---NPETSVLAHIRLTGL-CGTGTKPPDLIATIACSAC 57
           +    A RG EC +R+PGVC       E+ V  H   +    G GTK         C  C
Sbjct: 53  SKYLAACRGEECYLRVPGVCCSIGWPHESVVDCHSNQSKHGKGAGTKAKHEYTVPGCGPC 112

Query: 58  HDEID 62
           H  +D
Sbjct: 113 HYWLD 117


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_B4ESM1 Phage protein n=32 Tax=root RepID=B4ESM1_PROMH        127   1e-28
UniRef50_P68662 Uncharacterized protein ybcO n=57 Tax=root RepID...   124   7e-28
UniRef50_D0FSB7 Conserved bacteriophage protein n=3 Tax=Enteroba...   121   6e-27
UniRef50_A6F0L5 Putative uncharacterized protein n=2 Tax=root Re...   109   2e-23
UniRef50_UPI0001AF4584 hypothetical protein Psyrpo1_28777 n=2 Ta...   105   3e-22
UniRef50_A2P365 Gp66 n=1 Tax=Vibrio cholerae 1587 RepID=A2P365_V...    97   2e-19
UniRef50_D0Z7P2 Putative uncharacterized protein n=3 Tax=Enterob...    94   2e-18
UniRef50_A4JWC7 Putative uncharacterized protein n=1 Tax=Burkhol...    90   2e-17
UniRef50_C9D3I7 Putative uncharacterized protein n=1 Tax=Silicib...    90   2e-17
UniRef50_Q1GIK2 Putative uncharacterized protein n=1 Tax=Ruegeri...    88   8e-17
UniRef50_Q7WLR3 Putative uncharacterized protein n=1 Tax=Bordete...    76   4e-13
UniRef50_D1DIA9 Predicted protein n=16 Tax=Neisseria gonorrhoeae...    74   1e-12
UniRef50_C5CJN8 Putative uncharacterized protein n=1 Tax=Variovo...    70   2e-11

Sequences not found previously or not previously below threshold:

UniRef50_Q2T6G6 Gp74 n=13 Tax=root RepID=Q2T6G6_BURTA                  45   6e-04
UniRef50_Q7WKA2 Putative uncharacterized protein n=2 Tax=Bordete...    40   0.022

>UniRef50_B4ESM1 Phage protein n=32 Tax=root RepID=B4ESM1_PROMH
          Length = 96

 Score =  127 bits (319), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/95 (62%), Positives = 70/95 (73%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60
          M +LR  A+GRECQ+RIP VCNGN ET VLAH R++GLCG G K  DL    ACSACHDE
Sbjct: 1  MMNLRNEAKGRECQIRIPSVCNGNSETVVLAHYRMSGLCGAGIKSHDLFGAWACSACHDE 60

Query: 61 IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIK 95
          +DRRT F D  YAK+C LEG+ RTQ I ++EG + 
Sbjct: 61 VDRRTRFTDMEYAKQCHLEGVLRTQAILIQEGKLN 95


>UniRef50_P68662 Uncharacterized protein ybcO n=57 Tax=root RepID=YBCO_BP82
          Length = 96

 Score =  124 bits (312), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60
          MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE
Sbjct: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60

Query: 61 IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA 96
          IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA
Sbjct: 61 IDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA 96


>UniRef50_D0FSB7 Conserved bacteriophage protein n=3 Tax=Enterobacteriaceae
           RepID=D0FSB7_ERWPY
          Length = 159

 Score =  121 bits (304), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 65/94 (69%), Gaps = 2/94 (2%)

Query: 3   DLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEID 62
           DLRK ARGRECQVRIPG CNGNPET VLAH R+ G CGTG KP D  A IAC+ CHD ID
Sbjct: 66  DLRKKARGRECQVRIPGYCNGNPETCVLAHYRMAGTCGTGYKPDDQQAAIACNGCHDAID 125

Query: 63  RRTHFVDAGYAKECAL--EGMARTQVIWLKEGVI 94
            RT   D  + +   +  EG+ RTQ IW +EG I
Sbjct: 126 GRTKTTDYTHDELRLMHAEGVLRTQAIWRREGFI 159


>UniRef50_A6F0L5 Putative uncharacterized protein n=2 Tax=root RepID=A6F0L5_9ALTE
          Length = 110

 Score =  109 bits (273), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 3/95 (3%)

Query: 3   DLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEID 62
            +R AARG+ C ++I GVC+G+  T+VLAH+      G   K  DL A  AC ACH  ID
Sbjct: 12  KIRDAARGQPCTLQIVGVCSGDWSTTVLAHLPDES-HGIARKSDDLSACFACDACHSVID 70

Query: 63  RRTHFVDA--GYAKECALEGMARTQVIWLKEGVIK 95
            R  +      + +        RT     ++ +  
Sbjct: 71  GRAKWPAMEREHKEWYFRRAQIRTWRALFEKNIFS 105


>UniRef50_UPI0001AF4584 hypothetical protein Psyrpo1_28777 n=2 Tax=Pseudomonas syringae
           group RepID=UPI0001AF4584
          Length = 101

 Score =  105 bits (263), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/97 (46%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 2   ADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEI 61
             L  AAR RECQ+R PG C+    T+VLAH RL G CG G KP DL A  AC+ CHD  
Sbjct: 5   TKLTNAARDRECQIRYPG-CSSESSTTVLAHYRLAGTCGMGIKPNDLQAAWACAYCHDIA 63

Query: 62  DRRTHFVDAGYAKECAL---EGMARTQVIWLKEGVIK 95
           D R         +E  L   EG+ RTQ   ++EG++K
Sbjct: 64  DGRLRAPAVLSREEVRLFHAEGVMRTQDALIREGMVK 100


>UniRef50_A2P365 Gp66 n=1 Tax=Vibrio cholerae 1587 RepID=A2P365_VIBCH
          Length = 95

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 6/93 (6%)

Query: 3  DLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEID 62
           + ++ARG++C +R+ G+CN NPET+V AH+ +    G G K  D +   ACSACH EID
Sbjct: 7  KIMQSARGKQCTLRLVGICNFNPETTVAAHVGVRR--GMGIKCGDNMVVYACSACHAEID 64

Query: 63 RRTHFVDAGYAKECALEGMARTQVIWLKEGVIK 95
            +      YA +  L G+  TQ I ++EG+  
Sbjct: 65 SSSR---ESYAAD-KLRGIEETQEILVEEGLFT 93


>UniRef50_D0Z7P2 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae
          RepID=D0Z7P2_EDWTE
          Length = 100

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 3  DLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEID 62
            R++ARG+ C ++IPG+CNG+P+T VL H+  + + G G K  D  A   CSACHD +D
Sbjct: 11 AWRESARGQGCTLQIPGICNGDPQTVVLCHLP-SPMHGMGYKSDDFWAVYGCSACHDALD 69

Query: 63 RRTHFV 68
           R  + 
Sbjct: 70 GRAPYD 75


>UniRef50_A4JWC7 Putative uncharacterized protein n=1 Tax=Burkholderia
          vietnamiensis G4 RepID=A4JWC7_BURVG
          Length = 190

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIR-LTGLCGTGTK--PPDLIATIACSAC 57
          M+ +  +ARG  C +R+PGVCN +PET+V AH   + G    G K    D I   AC +C
Sbjct: 1  MSKITDSARGETCALRLPGVCNRDPETTVWAHGNDVEGGKAKGKKLLRYDHIGCYACYSC 60

Query: 58 HDEIDRRTHFVDAGYAKECA 77
          H  +D +         ++  
Sbjct: 61 HMVLDGQAKRPAHLALEQVR 80


>UniRef50_C9D3I7 Putative uncharacterized protein n=1 Tax=Silicibacter sp. TrichCH4B
           RepID=C9D3I7_9RHOB
          Length = 125

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 3   DLRKAARGRECQVRIPGV-----CNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSAC 57
            + +AA G  C +RI        C+G PET+V  H+ + G  G  TK  D+     C+ C
Sbjct: 16  AIMRAAEGSPCTLRIASFIAGKKCSG-PETTVACHLPVWG-KGVSTKVTDMATAFGCATC 73

Query: 58  HDEIDR----RTHFVDAGYAK---ECALEGMARTQVIWLKEGVI 94
           H  +D        +++  Y     E  L G+  T  + ++ GVI
Sbjct: 74  HAILDGIDQDARRYLEHHYKNAVLERMLHGLTETHALLIQRGVI 117


>UniRef50_Q1GIK2 Putative uncharacterized protein n=1 Tax=Ruegeria sp. TM1040
          RepID=Q1GIK2_SILST
          Length = 101

 Score = 88.2 bits (217), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 1  MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60
          M  LR AA+G+ C +R+P  CN NPET+ L HIR  G  GT  KP D +A  ACS CHD 
Sbjct: 8  MTKLRTAAKGQPCTLRLP-CCNNNPETTSLCHIRAFGWAGTSEKPMDFLAVFACSDCHDA 66

Query: 61 IDRRT 65
          +DRR 
Sbjct: 67 LDRRR 71


>UniRef50_Q7WLR3 Putative uncharacterized protein n=1 Tax=Bordetella bronchiseptica
           RepID=Q7WLR3_BORBR
          Length = 164

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 3   DLRKAARGRECQVRIPGVCNGNPETSVLAHI-RLTGLCGTGTKPPDLIATIACSACHDEI 61
            L   A G  C +R+P  C G  +++V  H  RL    G G K  D      CS CH  I
Sbjct: 56  ALLALAEGENCLLRVPKYCQGGTDSTVACHSNRLRDGKGKGIKAHDWAIAFGCSGCHWFI 115

Query: 62  D 62
           D
Sbjct: 116 D 116


>UniRef50_D1DIA9 Predicted protein n=16 Tax=Neisseria gonorrhoeae RepID=D1DIA9_NEIGO
          Length = 116

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 2   ADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEI 61
           + +RKAA+G +C   I GVCN NPET VL         G G K   L A   C      I
Sbjct: 18  SAIRKAAKGGQCTPNIAGVCNDNPETVVLCRFPGE-THGAGLKSGGLGAGFGCGCRRGAI 76

Query: 62  DRR----THFVDAGYAKECALEGMARTQVI 87
           D R    +      Y +   L  + R + +
Sbjct: 77  DGRGAGLSREDKEFYMRRSQLRTIRRLEAL 106


>UniRef50_C5CJN8 Putative uncharacterized protein n=1 Tax=Variovorax paradoxus S110
           RepID=C5CJN8_VARPS
          Length = 164

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 4   LRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGT--GTKPPDLIATIACSACHDEI 61
           L   ARG+ C +R+  VCN +P T V AH  L G+ G     K  D     ACSACH  +
Sbjct: 45  LLSMARGQSCVLRVEEVCNRDPATVVAAHSNL-GIHGKAGARKADDQYHVHACSACHQWL 103

Query: 62  D 62
           D
Sbjct: 104 D 104


>UniRef50_Q2T6G6 Gp74 n=13 Tax=root RepID=Q2T6G6_BURTA
          Length = 151

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 2   ADLRKAARGRECQVRIPGVCNG---NPETSVLAHIRLTG-LCGTGTKPPDLIATIACSAC 57
           +    A RG EC +R+PGVC       E+ V  H   +    G GTK         C  C
Sbjct: 53  SKYLAACRGEECYLRVPGVCCSIGWPHESVVDCHSNQSKHGKGAGTKAKHEYTVPGCGPC 112

Query: 58  HDEID 62
           H  +D
Sbjct: 113 HYWLD 117


>UniRef50_Q7WKA2 Putative uncharacterized protein n=2 Tax=Bordetella bronchiseptica
           RepID=Q7WKA2_BORBR
          Length = 138

 Score = 40.0 bits (92), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 3   DLRKAARGRECQVRIPGVCN--GNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDE 60
               A RG  C  +  G C+  G+P T V AH       GTG K PD     AC  CH  
Sbjct: 41  KYLAACRGERCYQQFAGCCSYKGDP-TVVPAHQN--QGKGTGLKVPDRFTVPACYHCHTL 97

Query: 61  IDRRTHFVDAGYAKE 75
            D+     +   A  
Sbjct: 98  YDQSGLDREHKRATW 112


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.319    0.134    0.385 

Lambda     K      H
   0.267   0.0414    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,039,845
Number of Sequences: 3077464
Number of extensions: 18440487
Number of successful extensions: 42979
Number of sequences better than 1.0e-01: 15
Number of HSP's better than  0.1 without gapping: 34
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 42902
Number of HSP's gapped (non-prelim): 43
length of query: 96
length of database: 1,040,396,356
effective HSP length: 65
effective length of query: 31
effective length of database: 840,361,196
effective search space: 26051197076
effective search space used: 26051197076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 87 (38.1 bits)