HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/d4a6387acab167c6/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/d4a6387acab167c6/query.hhm DATE Sat Jan 7 21:43:28 2012 LENG 123 match states, 123 columns in multiple alignment FILT 11 out of 13 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.4282 0.3186 SEQ >ss_pred CCEEEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCEEHHHCCCCCCCCCCHHHHHHHHHHHHC CHHHHHHCCCCHHHHHHHHCCCC >ss_conf 9104656606971888873200046767899999998620456421798764415888762389999723101010000124442116778888888530 86565210248899999632689 >Consensus xxxixxixxxxxxkxvVxaxsxeSPlxxlxeIexeLxxlgxxxfxGxVlFDLllxNGxxxnRFvxxxFxgxxfdxxSfkilxxxxxxxxxxxxxxxxxxn xpexLxxSiLtxxexxxxxxxxx >batch____ MFEITGINVSGALKAVVMATGFENPLSSVNEIETKLSALLGSETTGEILFDLLCANGPEWNRFVTLEMKYGRIMLDTAKIIDEQDVPTHILSKLTFTLRN HPEYLEASVLSPDDVRQVLSMDF >UniRef50_A8H217(1-120:131) Putative uncharacterized protein n=1 Tax=Shewanella pealeana ATCC 700345 RepID=A8H217_SHEPA E=6e-19 s/c=0.79 id=36% cov=98% MYNIRKLNIKNNPQAIVTAISYESPLSLISEIEQELSSLFGSDFFGEVIFDLLCSNGFEWNRFMSMEFEGSALKRSSARIMDESELSPLLIELQSQLFAS KPEYLVDTILTSQEIAILMS--- >UniRef50_B0MJK5(15-103:116) Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MJK5_9FIRM E=2e-07 s/c=0.64 id=29% cov=73% ---------------LIIATSYDSPINNLDEVESEISG-----YTGIVIFDLTLINGTNSNRYLEAEVLDGKIDLKSFKI--KKELDDTVNEVSKRFFQN NEEILERSTIT------------ >UniRef50_C3IUJ7(83-169:183) Putative uncharacterized protein n=1 Tax=Bacillus thuringiensis IBL 4222 RepID=C3IUJ7_BACTU E=1e-05 s/c=0.59 id=27% cov=72% ---------------VIYSLSYVSPLGKIPVIEKKLES-----YKGKVLFDLLLSNGFASNRYIEAEFNEGKFLIGSFR--AVEPDIEIKMESSSFYLK- EPSLLDNGIL------------- >UniRef50_Q6AIF2(18-108:123) Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AIF2_DESPS E=0.0002 s/c=0.52 id=30% cov=75% ---------------VVYSTSSYSPMNSLGALERELGQLGAR---CEVVFDLLLSNGNAKDRFYRIDFMGKRFDRKSLEILENPS-RELQKKALDFYSTN H-ELLDNSILS------------ >UniRef50_B9K8R6(13-110:121) Putative uncharacterized protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8R6_THENN E=0.0004 s/c=0.47 id=30% cov=80% -------------KYFVIMLTVEKPFDLLKEITGKLRRLGKGE--GKVLFDTTLGNLNKQERYIEAYFDGEKIDVSSFKVVKEP--PEYYLRKSFEYLsR NYSKYVERSLLTSAE--------- >UniRef50_A3JE93(2-111:112) Putative uncharacterized protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JE93_9ALTE E=2e-22 s/c=0.96 id=32% cov=90% ---IKKIRIVGGI-AVVTATAEFHPLRQLKRLANELEAIG---FKGSVLFDLLAVNGFADNRFASIRFTGQTFEKSSFAI--ESHVNQNIRSEQDTLVRT DETFLLGSVLSTTEVEKFI---- >UniRef50_B4WVS7(16-117:121) Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WVS7_9SYNE E=2e-21 s/c=1.01 id=35% cov=84% --------------ALVLTLNYESPLSYVCEIETIL---GKAEFSGIVLFDLLLCNGVADNRFVQFTFEGGRLDHESHNIIAVESLDDSILRVSENFYLA NPVLIERSYILLDSDKQMF---- >UniRef50_B7AW80(17-113:121) Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AW80_9BACE E=3e-07 s/c=0.58 id=15% cov=76% ---------------LILMMTCDSPFDYITEIAEQLN---NKQFKGSVIIDEMLHSGNSDERFITGYFDGVAFDENSFRFLTVPARSDL-RQPMCTYLAS DLDVLNYSILT------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1560 0 0 F 2 * * * * 1569 * * * * * * * * * * * * * * 593 2 0 * * * * * * 1932 0 0 E 3 * * * 1569 * * * * * * * 1649 * 1539 * * * * * * 3 0 * * * * * * 1932 0 0 I 4 * * * * * * * 0 * * * * * * * * * * * * 4 0 * * * * * * 2221 0 0 T 5 * * * 1870 * * * * 2066 * * * * * 2096 * 1979 * * * 5 0 * * * * * * 2221 0 0 G 6 1870 * * * * 1979 * * 1081 * * * * * * * * * * * 6 0 * * * * * * 2221 0 0 I 7 * * * * * * * 384 * 2096 * * * * * * * * * * 7 0 * * * * * * 2221 0 0 N 8 * * * * * * * * 1870 * * 1036 * * 2066 * * * * * 8 0 * * * * * * 2221 0 0 V 9 * * * * * * * 1081 * * * 1870 * * * * * 1979 * * 9 0 * * * * * * 2221 0 0 S 10 * * * * * * * * 979 * * * * * * 1979 * 2066 * * 10 0 * * * * * * 2221 0 0 G 11 * * 1870 * * 1022 * * * * * 2096 * * * * * * * * 11 0 * * * * * * 2221 0 0 A 12 1979 * * * * 2066 * * 1870 * * 2096 * * * * * * * * 12 0 * * * * * * 2221 0 0 L 13 * * * * * * * 2066 * 1979 * * 2096 * * * 1870 * * * 13 394 * 2066 * * * * 2221 0 0 K 14 * * * * * * * * 707 2207 * * * 2548 * * * * * * 14 0 * * * * 0 * 2557 0 1000 A 15 942 * * * 2565 * * * * 2884 * * * * * * * * * 2515 15 0 * * * * * * 2815 0 0 V 16 * * * * 3278 * * 2738 * 1782 * * * * * * * 1132 * * 16 0 * * * * * * 3609 0 0 V 17 * * * * * * * 1837 * * * * * * * * * 474 * * 17 0 * * * * * * 3609 0 0 M 18 * * * * * * * 2366 * 2323 3286 * * * * 3536 2468 * * 2079 18 0 * * * * * * 3609 0 0 A 19 1192 * * * * * * * * * 2238 * * * * 1947 3459 * * * 19 0 * * * * * * 3609 0 0 T 20 * * * * * * * 3534 * 1867 3199 * * * * * 1170 3536 * * 20 0 * * * * * * 3609 0 0 G 21 3405 3536 3976 * * 3286 * * * * * 3459 * * * 1513 2238 * * * 21 0 * * * * * * 3609 0 0 F 22 * 3199 * 3405 3286 * * 3976 * * * * * * * 3427 * 3278 * 1202 22 0 * * * * * * 3609 0 0 E 23 * * 2323 1092 3405 * * * * * * * * * * * * 3641 * 2676 23 0 * * * * * * 3609 0 0 N 24 * * * * * * 3405 * 3278 * * 3286 * * * 515 * * * * 24 0 * * * * * * 3609 0 0 P 25 * * * * * * * * * * * * 0 * * * * * * * 25 0 * * * * * * 3609 0 0 L 26 * * * * 2238 * * 3459 * 887 3427 * * * * 3976 * * * * 26 0 * * * * * * 3609 0 0 S 27 * * 2238 3976 * 3641 * * * * * 2443 * * 2469 1837 * * * * 27 0 * * * * * * 3609 0 0 S 28 * * * * 3976 * * * 3641 2400 * 2497 * 3405 * 2355 * * * 2323 28 0 * * * * * * 3609 0 0 V 29 * * * * 3976 * * 1861 * 1097 * * * * * * * 2370 * * 29 0 * * * * * * 3609 0 0 N 30 * 3459 3459 * * 3427 * * 2340 * * 3286 2588 * * 2738 3199 * * * 30 0 * * * * * * 3609 0 0 E 31 3427 * * 580 * * * * 3976 * * * * * 3405 * * 3641 * * 31 0 * * * * * * 3609 0 0 I 32 * * * * * * * 654 * 1870 * * * * * * * 3459 * * 32 0 * * * * * * 3609 0 0 E 33 1788 * * 719 * * * * * * * * * * * * 3278 * * * 33 0 * * * * * * 3609 0 0 T 34 * * * 3199 * 3278 * * 2588 * * 3405 * 3534 3427 2695 2370 * * * 34 0 * * * * * * 3609 0 0 K 35 * * 3976 1455 * * * 3459 1807 * * * * 2358 * * * * * * 35 0 * * * * * * 3609 0 0 L 36 * * * * * * * 2497 * 281 * * * * * * * * * * 36 138 * 3459 * * * * 3609 0 0 S 37 * * * 2393 * 3305 * * 3888 * * 3086 * 3400 3119 1674 * * * * 37 181 * 3086 * * * 0 3506 0 1000 A 38 2120 * * * * 3164 * * 2948 * * * * 3196 2834 1839 * * * * 38 565 * 1626 * * * 0 3047 0 1639 L 39 * * * * 2710 * * 2661 * 537 * * * * * * * * * * 39 239 * 2710 * * 2296 329 2827 0 2486 L 40 * * * * 2596 571 * * * 2630 * * * * * * * * * * 40 257 * 2613 * * 2086 387 2860 0 2489 G 41 2567 * * * * 1595 * * 1631 * * 2497 * * * * * * * * 41 0 * * * * 2087 387 2916 0 2384 S 42 3137 * * * * 2740 * * 1692 * * * * * 2752 1843 * * * * 42 232 * 2752 * * 2000 415 2888 0 2308 E 43 * * 1945 1249 * * * * 2592 * * * * 2702 * * * * * * 43 239 * 2712 * * 441 1925 2875 0 2283 T 44 * * * * 885 * * * * * * * * * * 2875 3016 * * 2332 44 0 * * * * * 0 3052 0 1648 T 45 * * * * 3431 * 3330 * 1080 * * * * * * 3335 2085 * * * 45 0 * * * * 0 * 3052 0 1648 G 46 * 3427 * * * 141 * * * * * * * * * * * * * * 46 0 * * * * * * 3609 0 0 E 47 * * 3976 1442 * * * 2459 2448 * * * * * * 2298 * * * * 47 0 * * * * * * 3609 0 0 I 48 * * * * * * * 3286 * * * * * * * * * 156 * * 48 0 * * * * * * 3609 0 0 L 49 * * * * 3976 * * 1805 * 1086 * * * * * * * 2481 * * 49 0 * * * * * * 3609 0 0 F 50 * * * * 166 * * 3199 * * * * * * * * * * * * 50 0 * * * * * * 3609 0 0 D 51 * * 0 * * * * * * * * * * * * * * * * * 51 0 * * * * * * 3609 0 0 L 52 * * * 3199 * * * * * 344 * * * * * * 3278 * * * 52 0 * * * * * * 3609 0 0 L 53 * * * * * * * 3976 * 658 3199 * * * * * 2366 * * * 53 0 * * * * * * 3609 0 0 C 54 3405 1862 * * * * * 3976 * 819 * * * * * * * * * * 54 0 * * * * * * 3609 0 0 A 55 3286 3459 * * * 3278 3199 3459 * * * * 3976 * * 1946 * 2469 * * 55 0 * * * * * * 3609 0 0 N 56 * * * * * * * * * * * 166 * * * 3199 * * * * 56 0 * * * * * * 3609 0 0 G 57 * * * * * 157 * * * 3278 * * * * * * * * * * 57 0 * * * * * * 3609 0 0 P 58 * * * * 1938 3976 * * * * 3536 1713 3286 * * * 3459 3459 * * 58 0 * * * * * * 3609 0 0 E 59 1480 * * 2405 * * * * 2585 * * 3459 * * * 2358 * * * * 59 0 * * * * * * 3609 0 0 W 60 * * 1765 * * * * * 2676 * * * * 3278 3536 2547 * * 2405 * 60 0 * * * * * * 3609 0 0 N 61 * * 2676 2238 * * * * * * * 663 * * * * * * * * 61 0 * * * * * * 3609 0 0 R 62 * * * * * * * * * * * * * * 0 * * * * * 62 0 * * * * * * 3609 0 0 F 63 * * * * 595 * * * * * * * * * * * * * * 1566 63 0 * * * * * * 3609 0 0 V 64 3405 * * * * * * 1775 * 3459 3534 * * * * * * 1543 * 3427 64 0 * * * * * * 3609 0 0 T 65 * * * 1867 * * * * * * * * * 3459 3427 1905 2242 * * 3976 65 0 * * * * * * 3609 0 0 L 66 1867 * * * 3459 3199 * 2416 * 3286 2535 * * * * * 3976 * * * 66 0 * * * * * * 3609 0 0 E 67 * * 3427 1474 3536 * * * * * * * * * 3405 3976 3459 * * 2238 67 0 * * * * * * 3609 0 0 M 68 * * * * 310 * * * * * 3286 * * * * * * 3459 * * 68 0 * * * * * * 3609 0 0 K 69 * * 1746 2496 * * * * 3286 3459 3427 2799 * * * * 3405 * * * 69 130 * 3537 * * * * 3609 0 0 Y 70 * * 3318 3526 * 509 * * * * * * * * * * * * * 3182 70 0 * * * * 0 * 3498 0 1000 G 71 * * * 3199 * 1365 * * 3292 * * * * 3322 * 2434 * 3113 * * 71 0 * * * * * * 3490 0 0 R 72 2266 * * * * * * * 1781 * * * * * 1698 3430 3322 * * * 72 0 * * * * * * 3490 0 0 I 73 * * * * 1011 * * 1672 * 2394 * * * * * * * * * * 73 0 * * * * * * 3490 0 0 M 74 * * 940 3322 * * * * 3438 3548 3209 3430 * * * * * * * * 74 0 * * * * * * 3490 0 0 L 75 * * * 3113 * * 3352 3548 3322 2287 * * * * 1800 * * 3199 * * 75 0 * * * * * * 3490 0 0 D 76 * * 3209 3352 * 3548 * * 2330 * * 3113 * * * 1344 * * * * 76 0 * * * * * * 3490 0 0 T 77 * * * * * * * * * * * * * * * 165 3209 * * * 77 0 * * * * * * 3490 0 0 A 78 2319 * * * 981 * 3352 * 3430 3292 * * * * * * * * * * 78 0 * * * * * * 3490 0 0 K 79 3322 * * 3292 * * * * 1299 * * 3352 * * 1769 * * * * * 79 129 * 3548 * * * * 3490 0 0 I 80 * * * * 3003 * * 606 * * * * 3328 * * * * 3075 * * 80 356 * 2194 * * * 0 3402 0 1000 I 81 * * * * * * * 1804 * 1215 2916 * * * * * * 2735 * * 81 0 * * * * 1683 538 3086 0 2048 D 82 2117 * 1987 2976 * * * * 2912 * * * * * * * 1959 * * * 82 0 * * * * 0 * 3205 0 1691 E 83 * * * 1289 * * * * 3370 * * 3292 * * * 3430 * 1742 * * 83 0 * * * * * * 3490 0 0 Q 84 * * 3430 2447 * * * * 3370 * * * 1615 3209 * 2379 * * * * 84 166 * 3199 * * * * 3490 0 0 D 85 2881 * 3044 1678 * * 3187 * * * * * 3352 * * 2167 * * * * 85 172 * 3155 * * * 0 3335 0 1000 V 86 * * 3141 * * * * * * 1075 * * * * 2719 * * 1942 * * 86 0 * * * * 0 * 3178 0 1648 P 87 * * 2361 3430 * * * 3548 * * * 3322 2204 * 3292 2266 * * * * 87 0 * * * * * * 3490 0 0 T 88 * 3430 1689 1754 * * * * * * * * 3438 3322 * * 3209 * * * 88 141 * 3430 * * * * 3490 0 0 H 89 * * * * * * 3096 3418 * 1524 * 3139 * * * 3248 3224 * * 3109 89 197 * 2967 * * * 0 3382 0 1000 I 90 * * * * * * * 1396 3228 2990 * * * 2978 * * * 3065 * 2827 90 0 * * * * 940 1063 3148 0 1590 L 91 * * * * * * * 3227 3144 1565 3418 3224 * * 2050 * * * * * 91 0 * * * * * 0 3382 0 1000 S 92 * * * 1702 * * * * 3144 * * * * 2967 2177 2117 * * * * 92 0 * * * * 0 * 3382 0 1000 K 93 2359 * * 3322 * * * * 2204 3438 * * 3113 * * 3548 * 2361 * * 93 0 * * * * * * 3490 0 0 L 94 * * * * * * * * * 2250 3113 * * 1810 * 1362 * * * * 94 0 * * * * * * 3490 0 0 T 95 * 3113 2307 3352 3199 * * * 3370 * * * * * * 1886 3209 * * * 95 0 * * * * * * 3490 0 0 F 96 * * 3430 3199 1757 * * * * * * 3352 * 3438 3370 * 2214 * * * 96 0 * * * * * * 3490 0 0 T 97 * * * * 1799 * * * * 2379 * * * * * * 3209 * * 1279 97 0 * * * * * * 3490 0 0 L 98 * * * * 2404 * * * * 1258 * * * * * 3292 * 3322 * 2390 98 166 3199 * 0 * * * 3490 1000 0 R 99 2266 * * * * * * * 3548 3352 * * * 3370 1287 * 3292 * * * 99 129 * 3548 * * * * 3490 0 0 N 100 3222 * * * * * * * 3328 * * 1130 * * * 2139 3193 * * * 100 0 * * * * 0 * 3402 0 1000 H 101 * * 2214 3548 * * 2250 * 3438 * * 1799 * * * * * * * 3199 101 155 * 3292 * * * * 3490 0 0 P 102 * * * 2179 * * * * * 2975 * * 912 * * 3052 * * * * 102 0 * * * * 0 * 3344 0 1000 E 103 * * 2263 1325 * * * * 3199 * * * * * * 3548 3322 3352 * * 103 0 * * * * * * 3490 0 0 Y 104 * * * * 3322 * * 3370 * 1808 * * * * * * * 3113 * 1314 104 0 * * * * * * 3490 0 0 L 105 * * * * * * * 3352 * 334 * * * * * * * 3199 * * 105 0 * * * * * * 3490 0 0 E 106 * * 2414 1280 * * * * * 3322 * 3113 * * * * * 3438 * 3430 106 0 * * * * * * 3490 0 0 A 107 3209 * 3438 * * 3322 * * * * * 2414 * * 1720 3430 * * * 3113 107 0 * * * * * * 3490 0 0 S 108 * * * * * 3548 * * * * * * * * * 282 3438 * * * 108 0 * * * * * * 3490 0 0 V 109 * * * * * * * 1338 * 3199 * * * * * * 3370 1732 * 3352 109 0 * * * * * * 3490 0 0 L 110 * * * * * * * 2361 * 312 * * * * * * * * * * 110 0 * * * * * * 3490 0 0 S 111 * * * * * * 3328 * * 3222 * * * * * 1563 1137 * * * 111 0 * * * * * * 3402 0 0 P 112 * * * 2687 * * * * * 2601 * * 2579 * * 1516 2618 * * * 112 0 * * * * * * 2851 0 0 D 113 2395 * 1590 2687 * * * * * * * * * 2648 * * 2618 * * * 113 0 * * * * * * 2851 0 0 D 114 * * 2579 964 * * * * * * * * * 2687 * 2601 * * * * 114 0 * * * * * * 2851 0 0 V 115 * * 2243 * * * * 1378 * * * * * * * * * 1307 * * 115 0 * * * * * * 2564 0 0 R 116 2349 * * 2334 * * * * 2243 * * * * * 2281 2408 * * * * 116 0 * * * * * * 2564 0 0 Q 117 * * * * * * * 2349 2334 * * * * 1262 * 2408 * * * * 117 0 * * * * * * 2564 0 0 V 118 * * * * 1371 * * * * 2349 2243 * * * * * * 2281 * * 118 0 * * * * * * 2564 0 0 L 119 * * * * 2243 * * 2334 * 1343 2349 * * * * * * * * * 119 0 * * * * * * 2564 0 0 S 120 * * * * * * * * * * * 1668 * * * 545 * * * * 120 0 * * * * * * 1922 0 0 M 121 * * * * * * * * * * 0 * * * * * * * * * 121 0 * * * * * * 1000 0 0 D 122 * * 0 * * * * * * * * * * * * * * * * * 122 0 * * * * * * 1000 0 0 F 123 * * * * 0 * * * * * * * * * * * * * * * 123 0 * * 0 * * * 1000 0 0 //