350 c1vmaA_ Probab=81.90   E-value=3.6  Score=20.29  Aligned_columns=80  Identities=26%

Q ss_pred             CCCCCEEEEECCCCC-HHHH---HHHHHHCCCC---EEEEEEC-CHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCC--
Q ss_conf             999977999478998-8899---9999634982---8999738-9899999999999739980899828923546014--
Q batch____       115 GNAPQRVMDVAAAPG-SKTT---QISARMNNEG---AILANEF-SASRVKVLHANISRCGISNVALTHFDGRVFGAAV--  184 (479)
Q Consensus       115 p~~g~~VLDlCAAPG-gKT~---~la~~l~~~g---~ivA~d~-~~~R~~~L~~nl~r~G~~nv~v~~~d~~~l~~~~--  184 (479)
                      +...-.|.=+|.-+| ||||   .||..+...|   .|++.|. ...-...|+...+++|+  -......+.++....  
T Consensus        88 ~~~~~~vi~~~Gp~G~GKTTt~aklA~~~~~~g~~v~li~~D~~R~gA~eQL~~~a~~~~v--~~~~~~~~~~~~~~~~~  165 (294)
T c1vmaA_          88 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGA--TVISHSEGADPAAVAFD  165 (294)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTC--EEECCSTTCCHHHHHHH
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC--EEEECCCCCCHHHHHHH
T ss_conf             5789669999806887602489999999996799489997587686479999999976198--28974883698999999


Q ss_pred             ------CCCCCEEEEECC
Q ss_conf             ------253358998167
Q batch____       185 ------PEMFDAILLDAP  196 (479)
Q Consensus       185 ------~~~fD~ILvDaP  196 (479)
                            ...||.||+|-+
T Consensus       166 ~~~~~~~~~~d~IlIDTa  183 (294)
T c1vmaA_         166 AVAHALARNKDVVIIDTA  183 (294)
T ss_dssp             HHHHHHHTTCSEEEEEEC
T ss_pred             HHHHHHHCCCCEEEECCC
T ss_conf             999999779989998188