HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/d472ad6f1e4b814b/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/d472ad6f1e4b814b/query.hhm DATE Thu Jan 26 03:52:06 2012 LENG 31 match states, 31 columns in multiple alignment FILT 1 out of 3 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.5107 3.5699 SEQ >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC >ss_conf 9413789999999999997999997310379 >Consensus mlgnmnvfmavlgiilfsgflaayfshkwdd >batch____ MLGNMNVFMAVLGIILFSGFLAAYFSHKWDD # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1000 0 0 G 3 * * * * * 0 * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 N 4 * * * * * * * * * * * 0 * * * * * * * * 4 0 * * * * * * 1000 0 0 M 5 * * * * * * * * * * 0 * * * * * * * * * 5 0 * * * * * * 1000 0 0 N 6 * * * * * * * * * * * 0 * * * * * * * * 6 0 * * * * * * 1000 0 0 V 7 * * * * * * * * * * * * * * * * * 0 * * 7 0 * * * * * * 1000 0 0 F 8 * * * * 0 * * * * * * * * * * * * * * * 8 0 * * * * * * 1000 0 0 M 9 * * * * * * * * * * 0 * * * * * * * * * 9 0 * * * * * * 1000 0 0 A 10 0 * * * * * * * * * * * * * * * * * * * 10 0 * * * * * * 1000 0 0 V 11 * * * * * * * * * * * * * * * * * 0 * * 11 0 * * * * * * 1000 0 0 L 12 * * * * * * * * * 0 * * * * * * * * * * 12 0 * * * * * * 1000 0 0 G 13 * * * * * 0 * * * * * * * * * * * * * * 13 0 * * * * * * 1000 0 0 I 14 * * * * * * * 0 * * * * * * * * * * * * 14 0 * * * * * * 1000 0 0 I 15 * * * * * * * 0 * * * * * * * * * * * * 15 0 * * * * * * 1000 0 0 L 16 * * * * * * * * * 0 * * * * * * * * * * 16 0 * * * * * * 1000 0 0 F 17 * * * * 0 * * * * * * * * * * * * * * * 17 0 * * * * * * 1000 0 0 S 18 * * * * * * * * * * * * * * * 0 * * * * 18 0 * * * * * * 1000 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 1000 0 0 F 20 * * * * 0 * * * * * * * * * * * * * * * 20 0 * * * * * * 1000 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 1000 0 0 A 22 0 * * * * * * * * * * * * * * * * * * * 22 0 * * * * * * 1000 0 0 A 23 0 * * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 1000 0 0 Y 24 * * * * * * * * * * * * * * * * * * * 0 24 0 * * * * * * 1000 0 0 F 25 * * * * 0 * * * * * * * * * * * * * * * 25 0 * * * * * * 1000 0 0 S 26 * * * * * * * * * * * * * * * 0 * * * * 26 0 * * * * * * 1000 0 0 H 27 * * * * * * 0 * * * * * * * * * * * * * 27 0 * * * * * * 1000 0 0 K 28 * * * * * * * * 0 * * * * * * * * * * * 28 0 * * * * * * 1000 0 0 W 29 * * * * * * * * * * * * * * * * * * 0 * 29 0 * * * * * * 1000 0 0 D 30 * * 0 * * * * * * * * * * * * * * * * * 30 0 * * * * * * 1000 0 0 D 31 * * 0 * * * * * * * * * * * * * * * * * 31 0 * * 0 * * * 1000 0 0 //