 |
| Job Description | P27302 | | Confidence | 23.08% | Date | Thu Jan 5 11:43:48 GMT 2012 |
| Rank | 316 | Aligned Residues | 35 |
| % Identity | 20% | Template | c2hkoA_ |
| PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:lysine-specific histone demethylase 1; |
PDBTitle: crystal structure of lsd1
|
| Resolution | 2.80 Å |
|
|   |   |
547 | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | G | Q | P | E | L | I | F | I | A | T | G | S | E | V | E | L | A | V | A | A | Y | E | K | L | T | A | E | G | V | K | A | R | V | V | S | M | P |
| Query Conservation |   |
  |   |   |   |
|
|   |
|
|   |   |
|   |   |
|   |   |
|
|   |
|
|   |   |
|   |   |   |
|
|   |   |   |
|
|   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |
|   |
|
|
|
|
|
|
| . | . | . |
|
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |
|
|
|
|
|
|   |
| Template Sequence |   |
K | K | T | G | K | V | I | I | I | G | S | G | . |
. |
. |
V | S | G | L | A | A | A | R | Q | L | Q | S | F | G | M | D | V | T | L | L | E | A | R |
| Template Known Secondary structure |   |
S |
| S |
|  |  |  |  |  |
|
| B | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| S | S |
| Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
| . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
276 | . | . | . | 280 | . | . | . | . | . | . | . | |
|
|
. | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|