BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (1342 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Ta... 1444 0.0 UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 T... 1422 0.0 UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 T... 1404 0.0 UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Ta... 1402 0.0 UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Ta... 1398 0.0 UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 T... 1393 0.0 UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Ta... 1379 0.0 UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Ta... 1333 0.0 UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulf... 1322 0.0 UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria Re... 1319 0.0 UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 T... 1295 0.0 UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926... 1205 0.0 UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Ta... 1176 0.0 UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189... 1149 0.0 UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax... 1142 0.0 UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Ta... 1138 0.0 UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria Re... 1137 0.0 UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Ta... 1129 0.0 UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Ta... 1120 0.0 UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Ta... 1109 0.0 UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella ... 1105 0.0 UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus C... 1084 0.0 UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax... 1069 0.0 UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria Rep... 1048 0.0 UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 T... 1045 0.0 UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria R... 973 0.0 UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Ta... 972 0.0 UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Ta... 952 0.0 UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 T... 881 0.0 UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=... 880 0.0 UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 T... 873 0.0 UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria Rep... 870 0.0 UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Ta... 870 0.0 UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira ... 866 0.0 UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus T... 863 0.0 UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haem... 847 0.0 UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Ta... 838 0.0 UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax... 807 0.0 UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Ta... 796 0.0 UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculu... 795 0.0 UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomac... 787 0.0 UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Ta... 766 0.0 UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 T... 753 0.0 UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcu... 751 0.0 UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Ta... 750 0.0 UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA po... 747 0.0 UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 T... 746 0.0 UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax... 742 0.0 UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Ta... 732 0.0 UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax... 729 0.0 UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Ta... 729 0.0 UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax... 728 0.0 UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax... 723 0.0 UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Ta... 721 0.0 UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax... 721 0.0 UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax... 709 0.0 UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacter... 695 0.0 UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Ta... 695 0.0 UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacter... 693 0.0 UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax... 683 0.0 UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 T... 682 0.0 UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 T... 674 0.0 UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 672 0.0 UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Ta... 656 0.0 UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax... 655 0.0 UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax... 655 0.0 UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Ta... 653 0.0 UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax... 647 0.0 UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax... 643 0.0 UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Ta... 643 0.0 UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax... 620 e-175 UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Ta... 618 e-175 UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular o... 612 e-173 UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 591 e-166 UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus H... 584 e-165 UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=A... 579 e-163 UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax... 573 e-161 UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas ... 567 e-160 UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax... 555 e-156 UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae... 555 e-156 UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 ... 555 e-156 UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax... 554 e-156 UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax... 552 e-155 UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 T... 552 e-155 UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis sol... 552 e-155 UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 543 e-152 UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota ... 541 e-152 UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax... 522 e-146 UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermob... 513 e-143 UniRef50_B7FVG3 DNA-directed RNA polymerase n=5 Tax=Eukaryota Re... 512 e-143 UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-termi... 510 e-142 UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-termi... 507 e-141 UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carte... 502 e-140 UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-termi... 501 e-140 UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 496 e-138 UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 496 e-138 UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax... 481 e-133 UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabdit... 472 e-131 UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Ta... 471 e-131 UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta ... 465 e-129 UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax... 465 e-129 UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogon... 457 e-126 UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota R... 454 e-125 UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix s... 450 e-124 UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit ... 448 e-124 UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas... 434 e-119 UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus ma... 433 e-119 UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata Re... 426 e-117 UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota R... 426 e-117 UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia inte... 423 e-116 UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomona... 419 e-115 UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=... 419 e-115 UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Ac... 408 e-112 UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 408 e-112 UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain ... 402 e-110 UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=A... 375 e-102 UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=F... 374 e-101 UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=45... 368 e-100 UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=12... 362 7e-98 UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota ... 361 1e-97 UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeot... 359 5e-97 UniRef50_P08266 DNA-directed RNA polymerase II subunit RPB2 n=26... 359 5e-97 UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-termi... 354 1e-95 UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 350 3e-94 UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga bre... 347 1e-93 UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides ... 347 2e-93 UniRef50_C5LHP3 DNA-directed RNA polymerase n=2 Tax=Perkinsus ma... 346 3e-93 UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit ... 346 4e-93 UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeo... 346 4e-93 UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 343 2e-92 UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax... 342 5e-92 UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplant... 341 8e-92 UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 339 5e-91 UniRef50_Q17U53 DNA-directed RNA polymerase, putative n=1 Tax=So... 339 6e-91 UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax... 338 7e-91 UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 336 3e-90 UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorell... 336 4e-90 UniRef50_Q2I5U8 DNA-directed RNA polymerase (Fragment) n=7 Tax=F... 336 4e-90 UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpu... 335 8e-90 UniRef50_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 331 9e-89 UniRef50_Q5RM00 DNA-directed RNA polymerase (Fragment) n=26 Tax=... 331 1e-88 UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota Re... 331 1e-88 UniRef50_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=2... 330 2e-88 UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata Re... 329 4e-88 UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 325 6e-87 UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophy... 325 9e-87 UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit R... 324 2e-86 UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 324 2e-86 UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepI... 322 5e-86 UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomyce... 322 8e-86 UniRef50_A5H2B2 DNA-directed RNA polymerase (Fragment) n=3 Tax=L... 320 2e-85 UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus K... 320 3e-85 UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella s... 319 6e-85 UniRef50_A8P4S3 DNA-directed RNA polymerase III subunit 127.6 kD... 319 6e-85 UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n... 319 6e-85 UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora l... 318 1e-84 UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporid... 318 1e-84 UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit ... 317 2e-84 UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylu... 317 2e-84 UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota R... 317 2e-84 UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyc... 316 5e-84 UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 316 6e-84 UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular org... 315 9e-84 UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Ta... 314 2e-83 UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-termi... 313 2e-83 UniRef50_B2W234 DNA-directed RNA polymerase n=1 Tax=Pyrenophora ... 313 4e-83 UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 312 5e-83 UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 311 2e-82 UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 ... 311 2e-82 UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta ... 311 2e-82 UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 ... 311 2e-82 UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 ... 310 2e-82 UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 310 3e-82 UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 309 4e-82 UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putat... 309 4e-82 UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 T... 309 7e-82 UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi... 308 1e-81 UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenop... 307 2e-81 UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 307 2e-81 UniRef50_B9G6G0 DNA-directed RNA polymerase n=5 Tax=Oryza sativa... 307 3e-81 UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q... 304 1e-80 UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 304 2e-80 UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomat... 304 2e-80 UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomona... 303 3e-80 UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 T... 302 6e-80 UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 300 3e-79 UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 299 7e-79 UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 ... 297 3e-78 UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitoz... 296 3e-78 UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium c... 295 1e-77 UniRef50_C9SKJ8 DNA-directed RNA polymerase n=1 Tax=Verticillium... 294 1e-77 UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota R... 294 2e-77 UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=... 292 4e-77 UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas R... 292 5e-77 UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax... 292 6e-77 UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax a... 292 7e-77 UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum... 292 7e-77 UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophy... 292 7e-77 UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (... 291 2e-76 UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium R... 290 2e-76 UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora ... 290 2e-76 UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 290 3e-76 UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenop... 289 5e-76 UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa... 289 5e-76 UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=L... 288 1e-75 UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=... 287 3e-75 UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia ... 286 3e-75 UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit ... 285 6e-75 UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 ... 284 2e-74 UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella... 279 5e-73 UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 279 6e-73 UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa pol... 278 1e-72 UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax... 277 2e-72 UniRef50_A7SSE2 DNA-directed RNA polymerase n=1 Tax=Nematostella... 276 4e-72 UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 276 5e-72 UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus... 274 2e-71 UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=I... 272 7e-71 UniRef50_Q0CKF7 DNA-directed RNA polymerase I polypeptide 2 n=3 ... 272 1e-70 UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 271 1e-70 UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium t... 268 1e-69 UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=S... 267 2e-69 UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psych... 265 8e-69 UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative ... 265 1e-68 UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=E... 262 5e-68 UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=P... 262 8e-68 UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunalie... 261 2e-67 UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious s... 261 2e-67 UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella t... 256 3e-66 UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hyp... 254 2e-65 UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit ... 253 3e-65 UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA PO... 252 6e-65 UniRef50_Q06VE3 RNA polymerase subunit n=3 Tax=Ascovirus RepID=Q... 250 3e-64 UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis ... 249 5e-64 UniRef50_A9BK45 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 247 2e-63 UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrel... 247 2e-63 UniRef50_Q4QA33 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 245 6e-63 UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 244 2e-62 UniRef50_UPI0000E487B4 PREDICTED: similar to Polymerase (RNA) II... 241 1e-61 UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=... 241 2e-61 UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus Re... 240 2e-61 UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax... 239 7e-61 UniRef50_B9F8X6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa... 238 1e-60 UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-termi... 238 1e-60 UniRef50_Q1L6B6 RNA polymerase II second largest subunit (Fragme... 227 2e-57 UniRef50_Q4ZJA8 DNA-directed RNA polymerase n=3 Tax=Lymphocystiv... 227 3e-57 UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=P... 222 8e-56 UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax... 221 1e-55 UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular org... 218 9e-55 UniRef50_D2RIB2 RNA polymerase beta subunit n=1 Tax=Archaeoglobu... 218 2e-54 UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 218 2e-54 UniRef50_P33811 DNA-directed RNA polymerase 132 kDa polypeptide ... 213 3e-53 UniRef50_A9TCU8 Predicted protein n=6 Tax=Physcomitrella patens ... 212 7e-53 UniRef50_D1GLP0 RNA polymerase beta subunit (Fragment) n=1 Tax=N... 212 1e-52 UniRef50_Q98S72 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 210 3e-52 UniRef50_D2EG08 RNA polymerase Rpb2 domain 6 n=1 Tax=Candidatus ... 207 2e-51 UniRef50_P15352 DNA-directed RNA polymerase subunit B'' n=25 Tax... 207 3e-51 UniRef50_Q3LW79 Second-largest subunit of RNA polymerase III n=1... 203 5e-50 UniRef50_P42487 DNA-directed RNA polymerase subunit 2 n=7 Tax=Af... 202 6e-50 UniRef50_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprino... 202 9e-50 UniRef50_B7RK98 DNA-directed RNA polymerase, beta subunit n=1 Ta... 202 1e-49 UniRef50_A7AXE5 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 200 3e-49 UniRef50_UPI0001C41F1A DNA-directed RNA polymerase subunit B''''... 191 2e-46 UniRef50_Q06SF4 DNA-directed RNA polymerase subunit beta C-termi... 191 2e-46 UniRef50_Q8TXI6 DNA-directed RNA polymerase second-largest subun... 188 1e-45 UniRef50_O27123 DNA-directed RNA polymerase subunit B'' n=19 Tax... 186 6e-45 UniRef50_Q5W438 RNA polymerase B subunit (Fragment) n=4 Tax=Cyan... 185 8e-45 UniRef50_C0GNU6 RNA polymerase Rpb2 domain 6 n=1 Tax=Desulfonatr... 185 1e-44 UniRef50_A6BAY3 DNA-directed RNA polymerase beta chain (Fragment... 184 3e-44 UniRef50_C7DHC6 RNA polymerase beta subunit n=1 Tax=Candidatus M... 176 4e-42 UniRef50_C6H0E8 RNA polymerase subunit B (Fragment) n=1 Tax=Acin... 175 1e-41 UniRef50_Q0PPY8 RNA polymerase II second largest subunit (Fragme... 169 9e-40 UniRef50_Q74NB5 NEQ173 n=1 Tax=Nanoarchaeum equitans RepID=Q74NB... 167 2e-39 UniRef50_Q23U98 DNA-directed RNA polymerase, beta subunit family... 163 4e-38 UniRef50_A9SMS1 Predicted protein (Fragment) n=1 Tax=Physcomitre... 162 7e-38 UniRef50_B9HB57 Predicted protein n=1 Tax=Populus trichocarpa Re... 161 2e-37 UniRef50_C5LIK5 DNA-directed RNA polymerase III subunit, putativ... 159 8e-37 UniRef50_UPI0001924FAA PREDICTED: similar to DNA-directed RNA po... 155 2e-35 UniRef50_Q2Z143 Putative uncharacterized protein n=1 Tax=Pseudom... 152 7e-35 UniRef50_D2EG09 RNA polymerase beta subunit n=1 Tax=Candidatus P... 148 1e-33 UniRef50_Q1KS34 DNA-directed RNA polymerase (Fragment) n=1 Tax=C... 143 3e-32 UniRef50_D1INW9 Whole genome shotgun sequence of line PN40024, s... 142 9e-32 UniRef50_C1TQA8 DNA-directed RNA polymerase, beta subunit/140 kD... 141 2e-31 UniRef50_P41187 DNA-directed RNA polymerase subunit beta (Fragme... 140 3e-31 UniRef50_Q48975 DNA-directed RNA polymerase (Beta) (Fragment) n=... 131 2e-28 UniRef50_Q9EMY3 AMV066 n=2 Tax=Entomopoxvirinae RepID=Q9EMY3_AMEPV 120 4e-25 UniRef50_A5AMN9 DNA-directed RNA polymerase n=1 Tax=Vitis vinife... 117 4e-24 UniRef50_P05472 Probable DNA-directed RNA polymerase n=4 Tax=Sac... 116 4e-24 UniRef50_A9U5J3 Predicted protein n=2 Tax=Physcomitrella patens ... 109 1e-21 UniRef50_UPI0001926473 PREDICTED: similar to DNA-directed RNA po... 108 2e-21 UniRef50_A9SWU4 Predicted protein n=1 Tax=Physcomitrella patens ... 99 7e-19 UniRef50_UPI0000E4A667 PREDICTED: similar to Polymerase (RNA) II... 99 7e-19 UniRef50_UPI0001742D24 DNA-directed RNA polymerase beta chain n=... 95 2e-17 UniRef50_C0SZK4 DNA-directed RNA polymerase subunit beta (Fragme... 87 4e-15 UniRef50_B9RDB2 DNA-directed RNA polymerase beta chain, putative... 86 1e-14 UniRef50_UPI0001924FA9 PREDICTED: similar to DNA-directed RNA po... 84 4e-14 UniRef50_D2J6W7 Putative uncharacterized protein n=1 Tax=Staphyl... 81 3e-13 UniRef50_D1I1U7 Whole genome shotgun sequence of line PN40024, s... 80 4e-13 UniRef50_C5Y5J9 Putative uncharacterized protein Sb05g004163 (Fr... 80 5e-13 UniRef50_C7AA72 RpoB (Fragment) n=36 Tax=Alphaproteobacteria Rep... 80 9e-13 UniRef50_P90631 RNA polymerase II second largest subunit (Fragme... 77 4e-12 UniRef50_Q36704 (S1 sensitive region) (Fragment) n=4 Tax=Embryop... 75 2e-11 UniRef50_UPI00016982A9 DNA-directed RNA polymerase subunit beta ... 64 3e-08 UniRef50_B3RKF6 Putative uncharacterized protein n=1 Tax=Trichop... 64 4e-08 UniRef50_Q8KRK0 RpoB protein (Fragment) n=1 Tax=Pediococcus pent... 60 5e-07 UniRef50_Q7SXI3 Zgc:66298 protein n=2 Tax=Danio rerio RepID=Q7SX... 55 2e-05 UniRef50_B5Z8J4 DNA-directed RNA polymerase, beta subunit n=1 Ta... 54 5e-05 UniRef50_B9U5W9 RNA polymerase beta subunit (Fragment) n=21 Tax=... 53 9e-05 UniRef50_UPI00006CCB8E hypothetical protein TTHERM_00437410 n=1 ... 46 0.011 UniRef50_A7TFJ4 Putative uncharacterized protein n=1 Tax=Vanderw... 45 0.019 UniRef50_B8XTQ5 Putative beta-N-acetylhexosaminidase n=1 Tax=Myc... 44 0.055 UniRef50_UPI0001924A1B PREDICTED: similar to DNA-dependent RNA p... 43 0.071 >UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Tax=cellular organisms RepID=RPOB_NOVAD Length = 1392 Score = 1444 bits (3738), Expect = 0.0, Method: Composition-based stats. Identities = 783/1360 (57%), Positives = 1012/1360 (74%), Gaps = 29/1360 (2%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY--GLEAAFRSVFPIQSYSGN 65 KKRIRK FG +V+ +P L+ +Q +S+++F+ DP Y GLE RSVFPIQ ++G Sbjct: 17 KKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDPATGYVSGLEKTLRSVFPIQDFAGT 76 Query: 66 SELQYV---SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK--DIKEQ 120 + L Y L P +DV EC+ RG+TY+AP++V L+L +E +A T DIKEQ Sbjct: 77 ASLDIKEKDGYVLESPKYDVNECRQRGITYAAPMKVTLKLATFEVDAETETKSLIDIKEQ 136 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG+IPLMT+NGTF INGTERVIVSQ+HRSPGV FD D+GKTHSSGK L+ AR+IPYR Sbjct: 137 DVYMGDIPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAARVIPYR 196 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 GSWLDFEFD KD + VRIDR+RKLP T +L AL E IL F++ V + + ++ Sbjct: 197 GSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLGDEDILHHFYDTVTWARAEGGWKVP 256 Query: 241 LVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 V E+ RG +FDI +G+V G++I+ R + KD ++ + +P E I G+ A Sbjct: 257 FVLEQWRGSKPAFDIVDAKSGEVIFPAGQKISPRAANKAAKDGLEALLIPTEEIFGRYAA 316 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 +D IDESTG + A E+S + L L ++G ++ L + + GP+I TL+ D D Sbjct: 317 RDLIDESTGRIWIEAGDEVSPENLDLLDKAGIDNLDLLDIDHISTGPWIRNTLKADKAPD 376 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R AL +IYR+MRPGEPPTRE AE+LF+ LFF DRYDLSAVGR+K N L + + Sbjct: 377 RDHALADIYRVMRPGEPPTRETAEALFDGLFFDGDRYDLSAVGRVKLNMRLGLDCPDTVT 436 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 L DDI+ V+K+L+++++GKGEVDDID+LGNRR+RSVGE+ ENQ+RVGL+R+ERAVKER Sbjct: 437 TLRTDDILAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKER 496 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S D+ T+MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGL Sbjct: 497 MSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGL 556 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 TRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLS +A+ N+YGF+ETPYRKV DG Sbjct: 557 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRKVVDGK 616 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT ++ YLSA+EE + +AQA++ L +G FVE+LV+ R GE + RD V MDVS + Sbjct: 617 VTKDVIYLSAMEEQKHTVAQASAELTADGSFVEELVSARQNGEFVMAPRDTVTLMDVSPK 676 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP ++AD P VGTGME VA DSG A Sbjct: 677 QLVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKADAPFVGTGMEETVARDSGAAISA 736 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 R GVV VDA+RIVI+ + ++ PG++G+DIY L K+ RSNQ+TCINQ P V +G+ +E Sbjct: 737 LRSGVVDQVDATRIVIRAS-GDIEPGQSGVDIYRLQKFERSNQSTCINQRPLVKVGDLIE 795 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+V+ED FT+IHI+E Sbjct: 796 KGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKEDVFTSIHIEEFEV 855 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDILVGK+TPKGE+ +TPE Sbjct: 856 MARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILVGKITPKGESPMTPE 915 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 EKLLRAIFGEKASDV+D+SLR+P GV+GT++DV+VF R G+E D R I+ ++++ K Sbjct: 916 EKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIEIDDRTRAIQNEEIERLAK 975 Query: 959 DLSEELQILEAGLFSRIRAVLVAGG-------------VEAEKLDKLPRDRWLELGLTDE 1005 D +E IL F+R++ +L+ ++ + L + R W + + D+ Sbjct: 976 DREDERAILNRATFNRLKDMLLGQVAAAAPKGIKKGVEIDEQVLADVERHEWWKFAVADD 1035 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 +Q QLE + QYD ++K E ++ K+ +GD+LAPGVLK+VKV++AVKR++QPGDK Sbjct: 1036 ARQQQLEAVKAQYDTAVKAIQEKFEDRKEKLERGDELAPGVLKMVKVFVAVKRKLQPGDK 1095 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 MAGRHGNKG+IS+I P EDMP+ E+GTPVD VLNPLGVPSRMN+GQI ETHLG AA+G+G Sbjct: 1096 MAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLGWAARGLG 1155 Query: 1126 DKINAMLKQQQEVAKL------REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 +I L +E E ++ ++ +DE+++ A+++R G Sbjct: 1156 KRIGEALDAWREANPNPEAGQPPEAVRELLKEIYGDNYAAEIDARNDEQIIDFAQSVRLG 1215 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 +P+ +PVFDGA E ++ ++L+L L SGQ+ L+DGRTG+ F+R VTVG Y+LKL+HLV Sbjct: 1216 VPMGSPVFDGAVEKDVTDMLRLAGLDESGQVTLFDGRTGDAFDRKVTVGMKYVLKLHHLV 1275 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAYTLQEMLTVKSDDV Sbjct: 1276 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVV 1335 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1336 GRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1375 >UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 Tax=Bacteria RepID=RPOB_METPP Length = 1375 Score = 1422 bits (3680), Expect = 0.0, Method: Composition-based stats. Identities = 872/1370 (63%), Positives = 1067/1370 (77%), Gaps = 33/1370 (2%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVF 57 YSYTE+KRIRK FGKR VL VPYLL++Q DS+ F+++D Q GL+AAF S F Sbjct: 6 PYSYTERKRIRKSFGKRENVLGVPYLLTMQKDSYVAFLQKDVPPQKRKPEGLQAAFLSAF 65 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE---GTV 114 PI S++G E++Y+ + + +P FD +ECQ RG+TY+A +R KL+++IY+RE V Sbjct: 66 PIVSHNGFVEMKYIEFNMAKPAFDTRECQQRGLTYAAAVRAKLQMIIYDRETSTSQSKVV 125 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 K+IKEQEVYMGE+PLMTD G+F++NGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++A Sbjct: 126 KEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 185 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 RIIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ EQIL FF F + D Sbjct: 186 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILANFFVFDNFRLMD 245 Query: 235 NKLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 + QME V +RLRGE A FD+ + G V VEK +RITARH R LE I VP +++ Sbjct: 246 SGAQMEFVADRLRGEIARFDLTDKAGAVIVEKDKRITARHTRALEASGTSFISVPEDFLV 305 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G+V+AK+ +D TGE+I AN EL+ LL KL +G K I+ L+TN+LD G YIS+TL Sbjct: 306 GRVLAKNMVDADTGEIIAKANDELTDSLLKKLRTAGIKDIQCLYTNELDMGAYISQTLAS 365 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 D T D L+A V IYRMMRPGEPPT +A ++LF LF+SED YDLS VGRMKFN + R+ Sbjct: 366 DETADELAARVAIYRMMRPGEPPTEDAVQALFNRLFYSEDTYDLSRVGRMKFNARVGRDT 425 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 EG +L+ DDI+DV+K L+++RNG+GEVDDIDHLGNRR+R VGE+AENQ+R GL R+E+ Sbjct: 426 AEGRMVLANDDILDVVKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLARIEK 485 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 AVKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 486 AVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSAL 545 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL++YAQ NEYGFLETPYR+ Sbjct: 546 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETPYRR 605 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V D VTD+I YLSAIEEG YVIAQAN+ LD++G +++LV+ R GES L S +++ YM Sbjct: 606 VIDSKVTDQIDYLSAIEEGKYVIAQANAGLDKDGKLIDELVSARESGESVLTSPERIQYM 665 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DV+ Q+VSV ASL+PFLEHDDANRALMGANMQRQAVP LR +K VGTG+ER AVDSG Sbjct: 666 DVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGVERVSAVDSG 725 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 AKRGGVV Y+D +RIVI+VN+ E GE G+DIYNL KY RSNQNT I+Q P V Sbjct: 726 TVVTAKRGGVVDYIDTNRIVIRVNDAETVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVQR 785 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V GDV+ADG STD+GELALGQNM VAFMPWNGYNFEDSIL+SERVV +DR+T+IHI Sbjct: 786 GDQVGAGDVIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRYTSIHI 845 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +EL ++RDTKLG EEIT DIPN+ E L +LDESGIVYIGAEV GD+LVGKVTPKGET Sbjct: 846 EELVVMARDTKLGSEEITRDIPNLSEQQLGRLDESGIVYIGAEVNPGDVLVGKVTPKGET 905 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 LTPEEKLLRAIFGEKASDVKD+SLRV G +GTVIDVQVFTR+G+++DKRA +I + +L Sbjct: 906 TLTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIQRDKRAQQIIDDEL 965 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGG-------------VEAEKLDKLPRDRWLEL 1000 K+ + DL+++L+I+EA F RI +L ++ L + + W ++ Sbjct: 966 KRFRLDLNDQLRIVEADAFDRIEKLLAGKTANGGPNKLAKGTPIDKAYLASVDKYHWFDI 1025 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 D++ NQLE + ++ +H F+ E KR+K+TQGD+L GVLK+VKVYLAVKRR+ Sbjct: 1026 RPADDDIANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRL 1085 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 QPGDKMAGRHGNKGV+SKI P+EDMPY +GTP DIVLNPLGVPSRMN+GQ+LE HLG A Sbjct: 1086 QPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHLGWA 1145 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 AKGIG +I +L+Q+ ++A +R+F+ Y+ + L+ SD E+ +A NL +G+ Sbjct: 1146 AKGIGQRIGDLLQQEAKIADVRKFLDELYNKSGGKSEG--LNGLSDAEITEMATNLAQGV 1203 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPT----------SGQIRLYDGRTGEQFERPVTVGYM 1230 P ATPVFDGA E EI+ ++ L Q L+DGRTG+ FERPVTVGYM Sbjct: 1204 PFATPVFDGATEEEIRAMMHLAYPDEIAAAKGLNATRTQATLHDGRTGDAFERPVTVGYM 1263 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 ++LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEM Sbjct: 1264 HVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEM 1323 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LTVKSDDVNGRTK+Y++IV G H +E GMPESFNVL+KEIRSLGI+IELE Sbjct: 1324 LTVKSDDVNGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGIDIELE 1373 >UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 Tax=Bacteria RepID=RPOB_MYXXD Length = 1408 Score = 1404 bits (3635), Expect = 0.0, Method: Composition-based stats. Identities = 778/1381 (56%), Positives = 1015/1381 (73%), Gaps = 46/1381 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV 56 M R+RK F K +++D+P L++IQ S++KF++ D GL+ F+SV Sbjct: 1 MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 FPI+ ++ S L++VSY L P +DV EC RG+TYSAP++V +RLV+++++ G ++ Sbjct: 61 FPIRDFNETSSLEFVSYHLERPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +D+KEQEVY GEIPLMT NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNA Sbjct: 121 RDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY--------------TTEQI 220 RIIPYRGSW+DFEFD KD L+VRIDRRRKLPAT+++RAL +TE+I Sbjct: 181 RIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEI 240 Query: 221 LDLFFEKVIFEI-RDNKLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLE 278 L+ ++ + + + + E L G+ A+ DI G++ V+K R+ T I++LE Sbjct: 241 LNYYYATETIYLHSAEEFEKSVELELLPGQRATRDIKAKTGELIVKKNRKFTRAAIKKLE 300 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 +K + + + + KV A D ++E+ G ++ N E++ + + +L + G K + LF Sbjct: 301 AAKMKTLPIDADELFTKVSAYDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFI 360 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 ++L+ GPY+ ETL +D +++EIYR +RPG+PPT E A +LF NLFF+ +RYDLS Sbjct: 361 DNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLS 420 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 VGR+K N EE IL+K DI++V++ LID++NGKG +DDIDHLGNRR+R+VGE Sbjct: 421 KVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE 480 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + ENQ+R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFMDQ Sbjct: 481 LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQT 540 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI SLS Y Sbjct: 541 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTY 600 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 A+ NE+GF+ETPYRKV GVVT+++ + SA+EE + IAQAN+ D++G F LV+ R Sbjct: 601 ARVNEFGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQANAETDKKGKFANALVSSRR 660 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 GE + VD MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP LR P Sbjct: 661 GGEFVQARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP 720 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLTKYT 757 LVGTG+E VA DSGVT VA+R G+V+ VDA RIV+K + + + +DIYNL KY Sbjct: 721 LVGTGIESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQ 780 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 RSNQNTC+NQ P +S G+ V +GDV+ADGP+T+ GELALGQN+ VAFMPW GYNFEDSIL Sbjct: 781 RSNQNTCLNQKPIISKGDRVMKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSIL 840 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 +SER++++D FT+IHI+E C++RDTKLG EEIT DIPNVGE AL LDESGI+ IGAEV Sbjct: 841 ISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEV 900 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GD+LVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GV GTVI+ +VF+R Sbjct: 901 KPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK 960 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK------ 991 GVEKD+RA +IE M+ + KD ++E+++L+ F RIR ++ V+ + +D Sbjct: 961 GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILL 1020 Query: 992 -------------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 +P W E+ + D ++L + +E K + K +I + Sbjct: 1021 KKGDILDDELLSTVPYKYWGEISVGDP-LDSRLRDILRNLEETKEAVKLAFGEKIARIKK 1079 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S+I P EDMPY E+G PVDIVL Sbjct: 1080 GDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVL 1139 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNIGQILETHLG AAKG G+ + ++ ++E ++ Y +D Sbjct: 1140 NPLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIY---SDPAFG 1196 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 L DEE+ +L ++G+ +ATPVFDGA+E EI LL G LP SGQ+ L+DGRTG Sbjct: 1197 EFLDKLDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTG 1256 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWA+ Sbjct: 1257 EPFDQNVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAM 1316 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGAAYTLQE LTVKSDDV GRT+MY+ IV G++ +E G+PESFNVLLKE++SL +++E Sbjct: 1317 EAYGAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVE 1376 Query: 1339 L 1339 L Sbjct: 1377 L 1377 >UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Tax=Bacteria RepID=RPOB_ANAD2 Length = 1422 Score = 1402 bits (3628), Expect = 0.0, Method: Composition-based stats. Identities = 781/1387 (56%), Positives = 1025/1387 (73%), Gaps = 50/1387 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSV 56 M + RIR++FGK ++ ++P L++IQ S+ KF++ D GL+ F+SV Sbjct: 1 MATTIQNNFRIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 FPI+ ++ S L++VSY L +P +DV EC RG+TYSAP++V +RLV+++++ G ++ Sbjct: 61 FPIKDFNETSSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +D+KEQEVY GEIPLMT+NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNA Sbjct: 121 RDVKEQEVYFGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE--------------QI 220 RIIPYRGSW+DFEFD KD L+VRIDRRRKLPAT++LRAL T + +I Sbjct: 181 RIIPYRGSWIDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEI 240 Query: 221 LDLFFEKVIFEIR-DNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQL 277 L +++ I K + +LVP+ L+G+ A+ DI + +V V+K R+ T I++L Sbjct: 241 LKYYYDTETIRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKL 300 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 +K + V E + K+ A+D +DE+TGE++ N E++ + +L + + LF Sbjct: 301 VAAKMKSLPVEPEEVYTKISAEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLF 360 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 ++L+ P + +TL D + A++EIYR +RPG+PPT E A +LF NLFF+ +RYDL Sbjct: 361 IDNLNILPALRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDL 420 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRS 455 S VGR+K N EE + +L+K DI++V++ LID++NGK +VDDIDHLGNRR+R+ Sbjct: 421 SKVGRLKLNYKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRA 480 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 VGE+ ENQ+R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFM Sbjct: 481 VGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFM 540 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 DQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLI SL Sbjct: 541 DQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASL 600 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 S YA+ NEYGF+ETPYRKV G VTDE+ + SA+EE ++IAQAN+ +D++G+F E V Sbjct: 601 STYARVNEYGFVETPYRKVEKGRVTDEVTFYSALEEEKHIIAQANAPVDKKGNFTEAKVW 660 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 CR +GE D+VD MDVS Q+VSV ASL+PFLE+DDANRALMG+NMQRQAVP LR Sbjct: 661 CRKEGEYIYVRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRT 720 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLT 754 PLVGTG+E VA DSGVT VAKR GVVQ VDASRIV+K + +DIYNL Sbjct: 721 QAPLVGTGIEAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLI 780 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 KY RSNQNTCINQ P V GE V++GDV+ADGP+T++GELALGQN+ VAFMPW GYNFED Sbjct: 781 KYQRSNQNTCINQKPIVKPGERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFED 840 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 SIL+SER+++ED FT++HI+E CV+RDTKLG EEIT DIPNVGE AL LDESGI+ IG Sbjct: 841 SILLSERLIKEDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIG 900 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 AEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GVSGTVI+ +VF Sbjct: 901 AEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVF 960 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 +R GVEKD+RA IEEM+ + KD ++E++I++ F +IR +L+ V A +D Sbjct: 961 SRKGVEKDERAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGE 1020 Query: 995 DRWLELGLTDE------------------EKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + + D+ + Q+ ++ E ++E K + K ++ Sbjct: 1021 QLLKKGDVLDDALLDTVPQRYWGEIAVAGDVQDLARKIIENFEEQKELVKLLFGEKIGRL 1080 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 +GD+L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S++ P ED+PY E+GTPVDI Sbjct: 1081 KKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDI 1140 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA--- 1153 VLNPLGVPSRMN+GQILETHLG AA+ +G ++ M++++ LR+ ++ A+ Sbjct: 1141 VLNPLGVPSRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGGP 1200 Query: 1154 -DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRL 1212 R + ++E+ +L + LR+GM +ATPVFDGA+E E+K L++ G + Q L Sbjct: 1201 VGERLAALIEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEG--SATLQSIL 1258 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 +DGRTGE F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR GE Sbjct: 1259 FDGRTGEPFDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGE 1318 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 MEVWA+EAYGAAY+LQE LTVKSDDV GRT+MY+ IV G + +E G+PESFNVL+KE++S Sbjct: 1319 MEVWAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQS 1378 Query: 1333 LGINIEL 1339 L +++EL Sbjct: 1379 LALDVEL 1385 >UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Tax=Neisseriaceae RepID=RPOB_NEIG1 Length = 1392 Score = 1398 bits (3619), Expect = 0.0, Method: Composition-based stats. Identities = 888/1393 (63%), Positives = 1094/1393 (78%), Gaps = 56/1393 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ----DPEGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR VL+VP+LL+ Q+DS+ KF++ D GL+AAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + L++V Y LGEP+FD+ ECQ+RG+TY+APLR ++RLVI ++EA + TVK+ Sbjct: 61 FPIVSHNGYARLEFVYYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKE 120 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 ++E EVYMGEIPLMT +G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 121 VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 180 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDFEFDPKD L+ RIDRRRK+P TI+L+AL Y EQILD+F++K F + N Sbjct: 181 IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSNG 240 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +Q +LV RL+GETA DI + G V V KG+RITA++IR + + ++V E + GK Sbjct: 241 VQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITAKNIRDITNAGLTRLDVEQESLLGK 300 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A D ID TGE++ +AN E++ +LLAK +G K I TL+ N+LD G YIS TLR D Sbjct: 301 ALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTDE 360 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T R +A V IYRMMRPGEPPT EA E LF LFFSED YDLS VGRMKFN +++ Sbjct: 361 TAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQKLS 420 Query: 416 GSG----------------------ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + +LS +DI+ + L+++RNG GEVDDIDHLGNRR+ Sbjct: 421 EAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV 480 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 RSVGE+ ENQFR GL RVERAVKERL+ + + LMP D+INAKP+SAA+KEFFGSSQLSQ Sbjct: 481 RSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQ 540 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 FMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN Sbjct: 541 FMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 600 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 SLSVYA+TN+YGFLETPYR+V DG VT+EI YLSAIEEG YVIAQAN++LD +G+ + DL Sbjct: 601 SLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDL 660 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 VTCR KGE+ + + D+V YMDV+T QVVSV ASLIPFLEHDDANRALMGANMQRQAVP L Sbjct: 661 VTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL 720 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 R +KP+VGTG+ER+VAVDS VA+RGGVV+YVDA+R+VI+V++DE GE G+DIYNL Sbjct: 721 RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNL 780 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 K+TRSNQ+T INQ P V G+ ++RGD++ADG STDLGELALGQNM +AFMPWNGYN+E Sbjct: 781 VKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYE 840 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 DSIL+SE+V +DR+T+IHI+EL V+RDTKLG E+IT DIPN+ E ++LDESGIVYI Sbjct: 841 DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYI 900 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 GAEV GD+LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLR+P G+SGTVIDVQV Sbjct: 901 GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV 960 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG---------- 983 FTR+G+++DKRA I + +LK+ + DL+++L+I + F RI ++V Sbjct: 961 FTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLTK 1020 Query: 984 ---VEAEKLDKLP-RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + E L LP R W ++ LTDE+ QLE + + + E ++ E K++K+TQG Sbjct: 1021 GSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKKLTQG 1080 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L PGV K+VKV++A+KRR+Q GDKMAGRHGNKGV+S+I P+EDMPY +G PVDIVLN Sbjct: 1081 DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN 1140 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQILE HLG AAKGIG++I+ MLK++++ +LREF+ + Y+ +K Sbjct: 1141 PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKERRKAGELREFLNKLYN---GSGKKE 1197 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG----------- 1208 DL + +DEE++ LA NLRKG A+PVFDGAKE+EI+E+L L Sbjct: 1198 DLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGFNDSK 1257 Query: 1209 -QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 QI LYDGR+GE F+R VTVG M+ LKL+HLVD+KMHARSTG YSLVTQQPLGGKAQFGG Sbjct: 1258 TQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGG 1317 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLL 1327 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY+NIV G H+++ GMPESFNVL+ Sbjct: 1318 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLV 1377 Query: 1328 KEIRSLGINIELE 1340 KEIRSLG++I+LE Sbjct: 1378 KEIRSLGLDIDLE 1390 >UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 Tax=Bacteria RepID=RPOB_SPHWW Length = 1455 Score = 1393 bits (3606), Expect = 0.0, Method: Composition-based stats. Identities = 772/1434 (53%), Positives = 1000/1434 (69%), Gaps = 97/1434 (6%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY--GLEAAFRSVFPI 59 T KKRIRK FG +V+ +P L+ +Q +S+++F+ P Y GLE RSVFPI Sbjct: 5 AVPATAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPADGYVSGLEKTLRSVFPI 64 Query: 60 QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTVKDI 117 + ++G +EL +V Y L +P +D EC+ RG+TY+AP+RV LRL+++E + +V DI Sbjct: 65 RDFAGTAELDFVQYELEDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTETRSVLDI 124 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 KEQ+VYMG++PLMT+NGTF+INGTERVIVSQ+HRSPGV FD D+GKTH+SGK L+ AR+I Sbjct: 125 KEQDVYMGDMPLMTENGTFLINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFAARVI 184 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN-----YTTEQILDLFFEKVIFEI 232 PYRGSWLDFEFD KD + VRIDR+RKLP T +LRAL ++ + V Sbjct: 185 PYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALGDAVIEVNPDKGKFEAGDIVAISG 244 Query: 233 RDNKLQMELVPERLRG-ETASFDIEANGKVYVEKGRR-------------------ITAR 272 + +++ V RL E + I G + +G + R Sbjct: 245 VNRACRVKAVAGRLVTVEDPTGAIIPGGLIQTAEGEKIGHVARIRLQGMSGEDILNYFYR 304 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE------------------------ 308 R + ++ + E G+ A D ++ TGE Sbjct: 305 TQRFVRGENGWKVPFVAENWRGQKPAFDVVNADTGEVVFPAGTKISPRAANKAGKDGLET 364 Query: 309 ------------------------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + A E++ + L L ++G ++ L + + G Sbjct: 365 LLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTPENLEALDKAGFDHVDLLDIDHVSTG 424 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 P+I TL+ D DR AL EIYR+MRPGEPPT+E AE+LF LFF +RYDLSAVGR+K Sbjct: 425 PWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSERYDLSAVGRVK 484 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 N L + + L +DI+ V+K L+D+++GKGE+DDID+LGNRR+RSVGE+ ENQ+ Sbjct: 485 LNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLENQY 544 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 RVGL+R+ERAVKER+S D+ T MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLSE+ Sbjct: 545 RVGLLRMERAVKERMSSVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEV 604 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSL+ +++ N+Y Sbjct: 605 THKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKY 664 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 GF+ETPYRK+ DG VT+E+ YLSA+EE + IAQAN+ LD EG FVEDL++ R GE + Sbjct: 665 GFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDSEGRFVEDLISAREAGEFLM 724 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 RD V MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +RA+ P VGTGM Sbjct: 725 APRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGM 784 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E VA DSG AKR G+V VDA+RIV++ + G++G+DIY L K+ RSNQ+TC Sbjct: 785 EETVARDSGAAIAAKRSGIVDQVDATRIVVRAT-GAVDAGKSGVDIYTLMKFQRSNQSTC 843 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 INQ P V +G+ V GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+V+ Sbjct: 844 INQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVK 903 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 +D FT+IHI E ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDIL Sbjct: 904 DDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILC 963 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 GK+TPKGE+ +TPEEKLLRAIFGEKASDV+D+SLR+P GVSGTV+DV+VF R G++KD+R Sbjct: 964 GKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHGIDKDER 1023 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-------------GVEAEKLDK 991 A+ IE ++ + KD +E IL ++R++ +L+ + E L + Sbjct: 1024 AMAIEREEIDRLTKDREDERAILNRANYARLKEMLLGQIATAAPKGIKKGSEINEELLAE 1083 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 + + W + + D+ +Q LE + QYD+ KK E + K+ +GD+L PGVLK+VK Sbjct: 1084 VEKREWWKFAVQDDARQADLEAVKAQYDDAVGLIVKKFEDRVEKLQRGDELPPGVLKMVK 1143 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V++AVKR++QPGDKMAGRHGNKGVIS+I P EDMP+ E+GTPVDIVLNPLGVPSRMN+GQ Sbjct: 1144 VFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQ 1203 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY------DLGADVRQKVDLSTFS 1165 I ETHLG AA+G+G ++ + L+ +E + D+ S Sbjct: 1204 IFETHLGWAARGLGKQVTSALEAWREANPDAQAATPPAAVVDRLKEVYGKEYHADIEGRS 1263 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 ++++ +A L+ G+P+ATPVFDGA+EA++ E+L+ L SGQ+ L+DGRTG+QF+R V Sbjct: 1264 TDQIVEMAGLLKNGVPMATPVFDGAREADVAEMLRRAGLDESGQVELFDGRTGDQFDRKV 1323 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 TVGY+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAY Sbjct: 1324 TVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAY 1383 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TLQEMLTVKSDDV GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1384 TLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1437 >UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Tax=Proteobacteria RepID=RPOB_DESDA Length = 1378 Score = 1379 bits (3569), Expect = 0.0, Method: Composition-based stats. Identities = 726/1358 (53%), Positives = 947/1358 (69%), Gaps = 32/1358 (2%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE-----GQYGLEAAFRSVFPIQSYSGNSE 67 K FGK L +P+LL++Q+DS++KF+++ GLE F +VFPI+ ++ + Sbjct: 6 KQFGKIKISLPIPHLLNLQIDSYEKFLQEGVPEAERRPDEGLEGVFHTVFPIEDFNKTAS 65 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA--PEGTVKDIKEQEVYMG 125 L++VSY +GEP +D EC +G+TY AP+R+K+RLV+Y+ + T++DIKEQ++Y G Sbjct: 66 LEFVSYEIGEPKYDQAECISKGLTYEAPMRIKVRLVVYDADEASGNRTIRDIKEQDIYFG 125 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 +PLMT+ GTF+INGTERVIV+QL RSPG+ F+ D GKTH+S KVLY+ R+IP RGSWLD Sbjct: 126 TLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMRGSWLD 185 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD-NKLQMELVPE 244 F+FD KD L+VRIDRRRK+PATI+ +A+ + EQILD F+ + + + + N + E+ E Sbjct: 186 FDFDHKDILYVRIDRRRKMPATILFKAMGMSKEQILDYFYTQETYRLEERNTIFWEVRKE 245 Query: 245 RLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 R + A DI ++ G V V+ G+ IT R R + + ++ IE+ + + G +A D D Sbjct: 246 LYRKDNAYADIVDSEGNVIVKAGKPITKRSWRLICEAGIEAIEMRPDTLDGMFLAGDVAD 305 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 TGEL+ A E++ LL ++ +G R+ L T D I +TL +D D+L A Sbjct: 306 PKTGELLAEAADEITPGLLDRMRDAGINRVSVLHTKGNDTSSSIRDTLMLDRIPDQLKAQ 365 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 EIYR +RP PPT E A S F+NLF + D YDLS VGR K N+ L +E L+ + Sbjct: 366 EEIYRRLRPSSPPTAEIAASFFDNLFRNPDYYDLSPVGRYKLNQRLSLDEPSDLRTLTDN 425 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 DI+ +K L+ +++ G DDIDHLGNRR+R VGE+ ENQ+R+GLVR+ERA+KER+SL + Sbjct: 426 DILTAIKVLVHLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMSLQE 485 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 + TLMP D+IN KP++A +KEFFG+SQLSQFMDQ N LSE+THKRR+SALGPGGLTRERA Sbjct: 486 ISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTRERA 545 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 GFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N+YGF+ETPY V +G VTDE+ Sbjct: 546 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDYGFIETPYHVVREGRVTDEV 605 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 +L A EG+ V+AQAN+ LDE+G+ V++ VT R KGE + RD+V MD+S Q+VS+ Sbjct: 606 LHLDASREGDQVVAQANALLDEQGNLVDEFVTVRVKGEVEMRHRDEVTLMDISPSQMVSI 665 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 A+LIPFLEHDDANRALMG+NMQRQAVP LR++KPLVGTGME VA DSG VA G Sbjct: 666 SAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEVDVARDSGACIVAPADGK 725 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 ++YVDA RIV+ E ++Y + G+ Y+L KY +SNQN+C Q P G+ V++G +L Sbjct: 726 IEYVDADRIVVA-YEGDVYKKQGGVRAYDLLKYHKSNQNSCFGQKPSCHPGQIVKKGQIL 784 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 ADGP D GELALG+N+ VAFMPW GYN+EDSIL+SER V+ED FT+IHI+E V+RDT Sbjct: 785 ADGPGIDDGELALGKNLVVAFMPWCGYNYEDSILISERTVKEDVFTSIHIEEFEVVARDT 844 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 KLGPEEIT DIPNV E L LDESGI+ IGA V DILVGK+TPKGETQLTPEEKLLR Sbjct: 845 KLGPEEITRDIPNVSEDMLRNLDESGIIRIGAAVKPDDILVGKITPKGETQLTPEEKLLR 904 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 AIFGEKA DVK++SL+VP GV GT+IDV+VF R EKD R L IE + ++ Sbjct: 905 AIFGEKARDVKNTSLKVPPGVEGTIIDVKVFNRRSGEKDDRTLAIEGHDTAVLDQKEADH 964 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG-------------------LTD 1004 ++ L + + +V V A K + +E G Sbjct: 965 MRALTDRTRALLIPHVVGKQVAASLPGKKKGEVLVEAGAALTEEMLASLPVKKLSGLFKS 1024 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 +E + + ++ + YD+ ++KR K+T+GDDL PGV+K+VKV++A+KR++ GD Sbjct: 1025 KEVNDAVAEILKPYDQQVDYLHAIYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKLSVGD 1084 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGV+S I P EDMP+ +G PVDIVLNPLGVPSRMNIGQI+ETHLG AK + Sbjct: 1085 KMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWGAKEL 1144 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G ++ +L + LR+ ++ + + + DEE LR G+ T Sbjct: 1145 GRQLAELLDSGAAMQVLRDEVKSIF---SSDDINALVDEMDDEEFKASVSKLRNGIVTKT 1201 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 PVFDGA E EI ++ L G+ LYDGRTGE F+ VT G MYMLKL+HLVD+K+H Sbjct: 1202 PVFDGATEEEIWSWMERAGLANDGKTTLYDGRTGEAFKNRVTTGVMYMLKLHHLVDEKIH 1261 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARSTG YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAY LQE LTVKSDDV GR KM Sbjct: 1262 ARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVKM 1321 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 Y+ IV G++ +E G+PESFNVL+KE+ SLG+N+ L E Sbjct: 1322 YEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQE 1359 >UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Tax=Bacteria RepID=RPOB_DESAH Length = 1401 Score = 1333 bits (3449), Expect = 0.0, Method: Composition-based stats. Identities = 710/1397 (50%), Positives = 947/1397 (67%), Gaps = 59/1397 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV 56 M S KRIRK+FG + +V+D+P L+ +Q SF++F++++ + G+ F+SV Sbjct: 1 MTGSLLASKRIRKEFGSKSRVVDIPDLIGMQRTSFERFLQRNVPPEEREDIGIHLVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV-- 114 PI+ ++G S L+YVSY GE ++EC RG+TY P+ + +RLV+Y+ + G Sbjct: 61 LPIKDFTGTSSLEYVSYSFGETKHSMKECISRGMTYEIPVNITVRLVVYDVDKDAGVTSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +DIKEQE+Y G IPLMT GTF+INGTER +VSQLHRS GVFFD DKGK+HSSGK++Y A Sbjct: 121 RDIKEQEIYFGTIPLMTKRGTFIINGTERAVVSQLHRSSGVFFDHDKGKSHSSGKIIYTA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 RIIP RGSW+D E DPKD + +RIDRRRK P TI+ +A YT E IL F++K +D Sbjct: 181 RIIPVRGSWIDMEIDPKDIVNIRIDRRRKFPVTILFKAFGYTNEDILSFFYKKEQIVKKD 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 L E P+ L+ ASFDI G+ V+KGR T R ++QL+ +K I + E I Sbjct: 241 GILFKEFNPDNLKRNRASFDILDPETGEAVVKKGRLFTLRALKQLQVAGLKSIPISEEDI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ A + T E++ A + ++L K++ +G L+ + + +TL Sbjct: 301 IGRGFATSVVHPETEEILAKAGSLIDPEVLEKIADAGITEFSILYVDTYSSDS-MRKTLA 359 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 VD R AL+EIYR +RPG P T E A+ ++LFF YDLS VGR+K N L Sbjct: 360 VDKVTSRAEALIEIYRRLRPGNPATPEVAQDFIDHLFFKPAYYDLSNVGRLKMNHRLGMS 419 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L ++DI+ L+++++ +G VDDIDHLGNRR+R+VGE+ ENQ+R+GLVR+E Sbjct: 420 TGIDVRTLRREDILLTAATLVELKDTQGAVDDIDHLGNRRVRAVGELLENQYRIGLVRME 479 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 RA+KER+S+ ++D +MP D++N KP+SA V+EFFG+SQLSQFMDQ NPLSE THKRR+SA Sbjct: 480 RAIKERMSMQEVDAMMPHDLVNPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSA 539 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGLTRERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI SL YA+ N++GF+ETPYR Sbjct: 540 LGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIETPYR 599 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 DGVV+ +I +LSA EE + IAQAN+ LD++GH + DLVT R GE + +++ +++ Sbjct: 600 IAKDGVVSKQITHLSAFEEKEHPIAQANAVLDDQGHLMNDLVTSRVGGEFEMVAKNDIEF 659 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 MDVS Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +R++ PLVGTG+E VA DS Sbjct: 660 MDVSPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGIEGVVARDS 719 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 GV VA+ G+V VDA RIV+K E+ + + IY +K+ RSNQNTC N P V Sbjct: 720 GVAIVAEHDGIVVDVDAKRIVVKNTENGKGSDDRTVTIYTASKFVRSNQNTCFNHRPIVK 779 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 G+ V +G+V+ADGPST++GELALG+N+ VAFMPW GYN+EDSILVSER+V+E +T++H Sbjct: 780 KGDAVRKGEVIADGPSTEMGELALGKNVTVAFMPWGGYNYEDSILVSERLVKEGVYTSVH 839 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 ++E V+RDTKLG EEIT DIPN GE AL LD+SGI+ +GAEV GDILVGK+TPKGE Sbjct: 840 VEEFEVVARDTKLGKEEITRDIPNAGEEALKDLDDSGIIRLGAEVKPGDILVGKITPKGE 899 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ 952 TQL+PEEKLLRAIFGEKA DVKD+SLRVP GV G V +VF+R G+ KD R IE+++ Sbjct: 900 TQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVTAAKVFSRRGLPKDDRTRLIEDLE 959 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGG------------------VEAEKLDKLPR 994 +++ +KD +E++I+ + R+ +L V + + Sbjct: 960 IEKLEKDRDDEVRIITETIQERLEDILAGQALQAVVKKGKKVVVPAGTLVTRGLFEGISL 1019 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + L + D + E+ + + + + + +GDDL PGVLK++K+ + Sbjct: 1020 TDLMGLTVEDSSLTEMAHVILEKAETQIKKARENFNNQASRYEKGDDLPPGVLKLIKINV 1079 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A+KR + GDKMAGRHGNKGV+S+I P+ D+PY E+G VD+VLNPLGVPSRMN+GQILE Sbjct: 1080 AMKRVLSVGDKMAGRHGNKGVVSRILPVADLPYFEDGRTVDMVLNPLGVPSRMNVGQILE 1139 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVA--------------------------------KLR 1142 HLG AA+G+G +I+ ++ +++ Sbjct: 1140 IHLGCAARGLGRQIDDLIYEKKTDELRARIKRIFTTPLIKTGERANKDKTHYDFSSHYTV 1199 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 E +++ + D E + A + G+ +ATPVFDGA E+EIK L+ Sbjct: 1200 EKSMAKRTNEEEIQFVDTIDHMDDTEFLEFASMYKNGVHMATPVFDGAAESEIKSLISYA 1259 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 L SGQ LYDGRTGE F++P+TVG MYMLKL+HLVDDK+HARS G YSLVTQQPLGGK Sbjct: 1260 GLDPSGQSTLYDGRTGEPFDKPITVGIMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGK 1319 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES 1322 AQFGGQR GEMEVWA+EAYGAA+ LQE +TVKSDD+ GRT+MY+ IV G + +EPGMPES Sbjct: 1320 AQFGGQRLGEMEVWAMEAYGAAHALQEFITVKSDDMTGRTRMYEKIVKGQNVLEPGMPES 1379 Query: 1323 FNVLLKEIRSLGINIEL 1339 F VL KE++SLG++I L Sbjct: 1380 FRVLTKELQSLGLDINL 1396 >UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFV8_THEYD Length = 1312 Score = 1322 bits (3420), Expect = 0.0, Method: Composition-based stats. Identities = 716/1361 (52%), Positives = 963/1361 (70%), Gaps = 84/1361 (6%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSY 62 + R R +FGK P +++VPYLL Q SF KF+++D GL++A SVFPI Y Sbjct: 3 KPLRERINFGKVPPLVEVPYLLEFQRKSFDKFLQKDIPPEERADEGLQSALNSVFPISDY 62 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT-VKDIKEQE 121 +G + ++++SY +GEP EC ++G+TYS P+++K+RL I++++ +K+ +EQE Sbjct: 63 NGTTTIEFISYSVGEPKLTPYECMVKGLTYSVPIKMKVRLNIWDKDEEGRKFLKESREQE 122 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 V++G++P+MT+ G+F+ING ERVIVSQLHRSPGV+F D+ K+ SG+ LY+ARIIP RG Sbjct: 123 VFLGDLPMMTETGSFIINGVERVIVSQLHRSPGVYFAPDRSKSRISGRFLYSARIIPVRG 182 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 SWLDFEFD KD L+VRID+R+KLPATI+L+AL YT E +L +F+ I+D + Sbjct: 183 SWLDFEFDSKDLLYVRIDKRKKLPATIVLKALGYTNEDLLRIFYPIEEIRIKDETTYTRV 242 Query: 242 VPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 V + L G DI + V++G +IT ++++++ ++ I + I G++ Sbjct: 243 VSDILTGVRTKVDICSADGKDIIVKEGSKITRYSLKKMKELGIQEIPISKSEIIGRITLS 302 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 D +D TGE+I +N E++ + ++ + +++E LF +++++ P + ETL D ++ Sbjct: 303 DIVDPETGEVIVDSNKEITEESFHRIISARIQKLELLFIDNINYLPSLRETLLTDKVENK 362 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL EIY+ +RPGEP T EAAE LF LFF RYDLS+VGR+K N+ L + + Sbjct: 363 KHALREIYKKLRPGEPATEEAAEELFYGLFFDPKRYDLSSVGRLKLNQKLGLDIPLDVRV 422 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+ DII+++K L+++R GKGEVDDIDHLGNRR+R VGE+ ENQFR+GLVR+ERA++E++ Sbjct: 423 LTDKDIIEIVKYLLNLRTGKGEVDDIDHLGNRRVRGVGELLENQFRIGLVRMERAIREKM 482 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 ++ D++T MP D+IN KP+ AAVKEFF +SQLSQFMDQ NPLSEITHKRR+SALGPGGLT Sbjct: 483 TITDVETAMPHDVINTKPVMAAVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLT 542 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI SL+ YA+ N++GF+E+PYRKV +G V Sbjct: 543 RERAGFEVRDVHPTHYGRICPIETPEGPNIGLITSLATYARINDFGFIESPYRKVVNGKV 602 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 T+++H+LSA+E NYVIA+A + +DEEG+ + + V+ R KG+ + SR++V+YMDVS +Q Sbjct: 603 TNDVHFLSALESENYVIAEATTPVDEEGNIIGETVSARVKGDFKMVSREEVEYMDVSPKQ 662 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VS+ ASLIPFLE+DDANRALMG+NMQRQAVP + + P+VGTGME A DSG VAK Sbjct: 663 IVSLSASLIPFLENDDANRALMGSNMQRQAVPLIHTEAPIVGTGMELYAARDSGWLVVAK 722 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 R G+V+ VD+ RIVI+V E+ G+DIYNL K+ +SNQ TC+ Q P V +G+ VER Sbjct: 723 RAGIVENVDSRRIVIRVTEE-----GGGVDIYNLVKFHKSNQGTCMTQKPIVKVGQTVER 777 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 G +LADGP D GELALG+N+ VAFMPW GYNFED+ILVSER+V+ED +T+IHI E Sbjct: 778 GTILADGPCMDNGELALGRNVLVAFMPWGGYNFEDAILVSERLVKEDVYTSIHIDEFEIE 837 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 RDTKLGPEEIT +IPNV E L LDE GI+ IGA+V GDILVGKVTPKGE LTPEE Sbjct: 838 CRDTKLGPEEITREIPNVNEELLKNLDEDGIIRIGAKVKAGDILVGKVTPKGERVLTPEE 897 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 KLL AIFGEKA DVK+S L VP G+ G VIDV++ TR G EK +RA IEE ++K+ ++D Sbjct: 898 KLLYAIFGEKAEDVKESCLYVPPGIEGVVIDVKILTRKGKEKSRRANAIEEEEIKRIERD 957 Query: 960 LSEELQILEAGLFSRIRAVLVAGGV------------------EAEKLDKLPRDRWLELG 1001 +E++IL+ SRIR +L + + ++ L ++ L+L Sbjct: 958 REDEIRILKETKASRIRKILKGKIILEDVKKGEKIICPKGKALTEKVVNLLDVNQLLKLK 1017 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 + D + + ++ ++ ++ ++ + K K +I +GD+L PGV +IVKVY+A+KR+IQ Sbjct: 1018 VEDPDVKAEVSRVNKEVEQNIKQIYAKYNEKIERIKKGDELPPGVNQIVKVYIAMKRKIQ 1077 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDKMAGRHGNKGV+S I P EDMPY E+GTPVDIVLNPLGVPSRMN+ Sbjct: 1078 VGDKMAGRHGNKGVVSMILPEEDMPYLEDGTPVDIVLNPLGVPSRMNV------------ 1125 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G + L + G+ Sbjct: 1126 ---GQILETHLGLAAKAL---------------------------------------GLY 1143 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 +A+PVF+GAKE EIKE+ + PT+GQ+ LYDG+TGE FERPVTVGYMYMLKL+HLV D Sbjct: 1144 VASPVFEGAKEDEIKEMFRKVGYPTTGQVTLYDGKTGEPFERPVTVGYMYMLKLHHLVAD 1203 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAYTLQE LTVKSDD+ GR Sbjct: 1204 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDITGR 1263 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 T+MY+ IV G+ +EPG+PESFNVL+KE++SL ++++L ++ Sbjct: 1264 TRMYEAIVKGHPVLEPGVPESFNVLIKELQSLCLDVDLLEK 1304 >UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria RepID=C1F3Y3_ACIC5 Length = 1496 Score = 1319 bits (3414), Expect = 0.0, Method: Composition-based stats. Identities = 733/1473 (49%), Positives = 960/1473 (65%), Gaps = 152/1473 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYS-- 63 R R DF K P + +P L+ +Q S+++F++ D GL++ F SVFPI + Sbjct: 9 RSRLDFSKIPTSIKIPNLIEVQRRSYERFLQMDKLPTEREDNGLQSVFTSVFPIADFRNI 68 Query: 64 ----------GNSELQYVSYR--------------------------------------- 74 GN E + + Sbjct: 69 SQLDFVDYSIGNWECKCGHLKGLHHLRTACTHCGNMVITDPFHPGDVLCQKCGTYNKNTP 128 Query: 75 -----LGEP-----VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE--GTVKDIKEQEV 122 G+P +D EC+ RG+T+SAPL+V +RL IY+++ T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDQAECEERGMTFSAPLKVTVRLTIYDKDPETGAKTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G+IPLMT NGTF++NGTERVIVSQLHRSPGVFF+ ++ + + +IIPYRGS Sbjct: 189 FFGDIPLMTQNGTFIVNGTERVIVSQLHRSPGVFFE------TANNRTYFLGKIIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMEL 241 W++FE+D K+ L+VRIDR+RK TI LRAL + E+IL F+ +++D KL + Sbjct: 243 WVEFEYDQKNTLYVRIDRKRKFLGTIFLRALGLKSDEEILKTFYTVDRIQVKDGKLYWTV 302 Query: 242 ----VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 P L G + + NG+ V GR+ITA ++ + + ++ IE+ + G + Sbjct: 303 AEAGTPTHLLGAKPAHAVVHNGQEIVHSGRKITASVLKAIREAKLEQIEIDTTDLDGAMT 362 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 A D ID TGE++ AN EL+ D L K+ ++G +E F D G I+ TLR D Sbjct: 363 AADVIDTETGEVLLEANHELTPDKLHKIVEAGIPTVEVFFPERDDVGNIITNTLRRDSVR 422 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EI 414 AL+EIYR +RPG+PPT + A +LFE +FF +YD S VGR+KFN L Sbjct: 423 KPEEALIEIYRKLRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYENAEETP 482 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 L+ D ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+ERA Sbjct: 483 LDHRTLTAGDFYSTIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIGLVRMERA 542 Query: 475 VKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 +KE++S ++ T MP D+INAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 543 IKEKMSVYQEMSTAMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSAL 602 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS +A+ NEYGF+E+PYR+ Sbjct: 603 GPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRR 662 Query: 594 VTDGVVTDEI------------------------------------------HYLSAIEE 611 V DG V D + YLSA EE Sbjct: 663 VRDGQVLDFVAVTNAGESGLRVGDYLEKAEALKLNDKLRAEKKRIIEFEPFSFYLSAWEE 722 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 + IAQAN LDE H VEDLV R +G L +R++VDY+DVS +Q+VSV ASL+PFL Sbjct: 723 DRHTIAQANVKLDENKHIVEDLVNARRQGNFVLVNREEVDYVDVSPKQLVSVAASLVPFL 782 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EHDDANRALMGANMQRQ+VP L ++ PLVGTGME A DSG +A+R GVV VD+ R Sbjct: 783 EHDDANRALMGANMQRQSVPLLVSEAPLVGTGMEGVTARDSGAVILARRNGVVDSVDSER 842 Query: 732 IVIK---VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 I+++ + E G DIY L K+ RSNQNTCINQ P V G+ V +G V+ADGP Sbjct: 843 IIVRVEGEHHPTQLSREVGSDIYQLIKFKRSNQNTCINQKPIVRKGDRVLKGQVIADGPC 902 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 T+ GEL LG+N+ VAFMPW GYNFED+IL+SE++V+ED +T++HI+E +RDTKLGPE Sbjct: 903 TEQGELGLGRNVLVAFMPWRGYNFEDAILISEKLVKEDYYTSVHIEEFEIEARDTKLGPE 962 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 EIT DIPNV E AL LDESGI+ IGA+V DILVGKVTPKGETQLTPEEKLLRAIFGE Sbjct: 963 EITRDIPNVSEHALRDLDESGIIRIGAKVKHNDILVGKVTPKGETQLTPEEKLLRAIFGE 1022 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 KA DV+D+SL P G+ GTV+DV++F+R G EKD+RA +IE Q+ + +K+L +E++IL Sbjct: 1023 KAGDVRDASLTCPPGIEGTVVDVRIFSRKGQEKDERAKQIEAEQVAKLEKNLEDEIRILT 1082 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWL----------------------ELGLTDEE 1006 R+ A+L V A+ D+ R L D Sbjct: 1083 DERLKRLEAILGGKVVLADLHDERTNKRLLVKDAVLDRDAIERISTRNLKRIRYADKDPR 1142 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 Q++++ E K + K+ +GD+L+PGV+K+VK+Y+A+KR++ GDKM Sbjct: 1143 VNEQIDEIEEMTSRQIDVLRKITNERIAKLQKGDELSPGVIKMVKIYIAMKRKLSVGDKM 1202 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKGVI++I P EDMPY +GTPV+IVLNPLGVPSRMN+GQILETHLG AA +G Sbjct: 1203 AGRHGNKGVIARILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAHDLGV 1262 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 ++ A++KQ Q+ +RE I+ + A + Q ++ DE+++R+ + +G+ T V Sbjct: 1263 QVAAIVKQHQDANVIREVIKERFKGTAVINQLIE---LEDEQLLRVGAGMARGIWFGTAV 1319 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 FDGAKE EIK LL+ LPTSG+ +L+DG TGE FE+PVTVG++YMLKL+HLVDDK+HAR Sbjct: 1320 FDGAKEEEIKALLESAGLPTSGKTKLFDGMTGEAFEQPVTVGFIYMLKLSHLVDDKIHAR 1379 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 S G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+Y+ Sbjct: 1380 SIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIYE 1439 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1440 AIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1472 >UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 Tax=cellular organisms RepID=RPOB_ACIBL Length = 1489 Score = 1295 bits (3351), Expect = 0.0, Method: Composition-based stats. Identities = 732/1475 (49%), Positives = 960/1475 (65%), Gaps = 154/1475 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYS-- 63 R R+DF K P + +P L+ +Q S+ +F++ D GL+A F+SVFPI + Sbjct: 9 RNRQDFSKIPATIQIPNLIEVQKRSYDRFLQMDLLPSERDDAGLQAVFQSVFPITDFRNV 68 Query: 64 ----------GNSELQYVSYR--------------------------------------- 74 GN E + + Sbjct: 69 SQLEFVDYAIGNWECKCGHLKGLHHLRTTCKNCGATVVTDPFHPGDVLCHKCGTFNANTP 128 Query: 75 -----LGEP-----VFDVQECQIRGVTYSAPLRVKLRLVIYER--EAPEGTVKDIKEQEV 122 G+P +DV EC+ RG+TYSAPL+V +RL I+++ E T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDVAECEERGMTYSAPLKVTMRLTIFDKDPETNNRTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G++PLMT NGTF+INGTERVIVSQLHRSPGVFF+ ++ + + +IIPYRGS Sbjct: 189 FFGDVPLMTQNGTFIINGTERVIVSQLHRSPGVFFE------TANNRTYFLGKIIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMEL 241 W++FE+D K+ L+VRIDR+RK TI LRAL T E IL F+ ++D KL L Sbjct: 243 WVEFEYDQKNILYVRIDRKRKFLGTIFLRALGLRTDEDILRTFYTVDRIAVKDKKLYWTL 302 Query: 242 -----VPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 P L G S I NG+ GR++TA +++++K + +E+ + + G Sbjct: 303 EPGIERPTNLVGLKLSHAIKAKNGEEVAHSGRKVTASVLKEIQKHKISELEIELGDLEGA 362 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 VA D ID +TGE++ AN EL+ D L+K+ +G + F D G IS TLR D Sbjct: 363 YVASDVIDTNTGEVLLEANQELTADKLSKMIDAGIGEVNVFFPERDDVGTVISATLRRDS 422 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR---E 412 AL+EIYR +RPG+PPT + A +LF +FF +YD S VGR+KFN L Sbjct: 423 VKTPQEALIEIYRKLRPGDPPTLDTATALFHGMFFDARKYDFSRVGRLKFNIKLFDRQDP 482 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L DD ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+E Sbjct: 483 TGLDKRTLDPDDFYHTIRYLLKLRRNLGAVDDIDHLGNRRVRAVGELLENQFRIGLVRME 542 Query: 473 RAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 RA+KE++S ++ T MP D++NAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+S Sbjct: 543 RAIKEKMSVYQEMSTAMPHDLVNAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLS 602 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 ALGPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS YA+ N+YGF+E+PY Sbjct: 603 ALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCYARINDYGFIESPY 662 Query: 592 RKVTDGVVTDEI------------------------------------------HYLSAI 609 R+V G V D + YLSA Sbjct: 663 RRVKGGRVIDYVQVTHAGDSDYRVGDKMEKSEAQKANEELRGRKKRGIELEPYSFYLSAW 722 Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 EE + IAQAN+ LDE+G +LV R G L SRD +DY+DVS +Q+VSV ASL+P Sbjct: 723 EEDKWTIAQANAELDEKGKITSELVNARKAGNFVLISRDDIDYIDVSPKQLVSVAASLVP 782 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 FLEHDDANRALMGANMQRQ+VP LRA+ P+VGTGME A DSG +A+R G++ VD+ Sbjct: 783 FLEHDDANRALMGANMQRQSVPLLRAEAPIVGTGMEGVTARDSGAVVLARRSGIIDSVDS 842 Query: 730 SRIVIK---VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 R++++ + E G DIY LTK+ RSNQNTCINQ P V G+ V++G V+ADG Sbjct: 843 ERVIVRVEGEHHPMQLSREVGSDIYQLTKFKRSNQNTCINQKPIVKQGDHVKKGQVIADG 902 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 P TD GEL LG+N+ V+FMPW GYNFED+ILVSE++V+ED +T++HI+E +RDTKLG Sbjct: 903 PCTDHGELGLGRNVLVSFMPWRGYNFEDAILVSEKLVKEDYYTSVHIEEFEIEARDTKLG 962 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 PEEIT DIPNV E+AL LDESG++ IGA V GDILVGKVTPKGETQLTPEEKLLRAIF Sbjct: 963 PEEITRDIPNVSESALRDLDESGVIRIGAPVKAGDILVGKVTPKGETQLTPEEKLLRAIF 1022 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI 966 GEKA DV+D+SL P G+ G V+DV++F+R G EKD+RA +IE Q+ + +K+L++E++I Sbjct: 1023 GEKAGDVRDASLTCPPGIEGVVVDVKIFSRKGQEKDERAKQIEGTQIAKLEKNLADEIRI 1082 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL----------------------ELGLTD 1004 L R+ +L A V+A+ D+ R L + D Sbjct: 1083 LTDERLKRLEGLLGAKVVQADLHDERTNKRLLTKDAVLDRETIERISTRNLKRIKYADKD 1142 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 Q++++ E K + K K+ +GD+L PGV+K+VKVY+A+KR++ GD Sbjct: 1143 PRVNEQIDEIEEMTSRQIDVLRKIVREKIEKLQKGDELPPGVIKLVKVYIAMKRKLSVGD 1202 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGVI++I P EDMPY E+GTPV+IVLNPLGVPSRMN+GQILETHLG A + Sbjct: 1203 KMAGRHGNKGVIARILPEEDMPYLEDGTPVEIVLNPLGVPSRMNVGQILETHLGWAGHEL 1262 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G KI + + E ++R+ +++ + A V ++ DE ++++A+ ++ G+ + Sbjct: 1263 GKKIAEFMVENSEAGQVRKHLKQLFKDTAFVDH---VTELDDEMLLKVAKGMQDGVFFGS 1319 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 VFDG+ EAEIK LL LPTSG+ LYDG TG++FE+PVTVGY+YMLKL+HLVDDK+H Sbjct: 1320 AVFDGSTEAEIKSLLDQAGLPTSGKTFLYDGMTGDRFEQPVTVGYIYMLKLSHLVDDKIH 1379 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARS G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+ Sbjct: 1380 ARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKI 1439 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Y+ IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1440 YEAIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1474 >UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926 Tax=root RepID=RPOBC_HELPS Length = 2890 Score = 1205 bits (3117), Expect = 0.0, Method: Composition-based stats. Identities = 630/1379 (45%), Positives = 888/1379 (64%), Gaps = 48/1379 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M K R+R DF K P L+VP LL +Q DS+ F+ + G+E F+S+FPIQ Sbjct: 1 MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQ 60 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA---PEGTVKDI 117 L+Y G+ + V+E RG+TYS PL++K+RL+++E++ + +KDI Sbjct: 61 DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI 120 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 KEQ +++ EIPLMT+ +F+ING ERV+V+QLHRSPGV F + + S K++Y +II Sbjct: 121 KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEE-ESSTSLNKLIYTGQII 179 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 P RGSWL FE+D KD L+ RI++RRK+P TI+ RA++Y + I+ +F+ V ++K Sbjct: 180 PDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKY 239 Query: 238 QMELVPERLRGETASFDIEA-NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 + + FD++ GKV + G+++T+R I++L+++ ++ +E P++ + + Sbjct: 240 LIPF-ASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRH 298 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS-------- 348 +A+ + E++ +L + L K+ G + + L H I Sbjct: 299 LAEPVMVGK--EVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSE 356 Query: 349 --ETLRVDPTNDRLSALV--EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 + L+ D +AL I+++M+PG+P T E A+ + LFF +RYDL+ VGRMK Sbjct: 357 SLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMK 416 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 N L + L+ +DII +K L+ I+N +G++DD DHLGNRRIR+VGE+ N+ Sbjct: 417 MNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANEL 476 Query: 465 RVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 GLV++++ +K++L+ G D+LMP D++N+K I++ + EFF QLSQFMDQ NPLS Sbjct: 477 HSGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLS 536 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALG GGL ++R GFE RDVHPTHYGR+CPIETPEG NIGLIN+LS + + N Sbjct: 537 EVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVN 596 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 + GF+E PY+KV DG V E YL+AI+E +++IA A++ +DEEG+ + DL+ R +GE Sbjct: 597 DLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEI 656 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 L + +V MD+S+ +V V ASLIPFLEHDDANRALMG NMQRQAVP LR D P+VGT Sbjct: 657 VLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRNDAPIVGT 716 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 G+E+ +A DS A R GVV+ +D+ I I EA ID Y+L K R+NQN Sbjct: 717 GIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQN 772 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 T NQ+P V +G+ VE G ++ADGPS D GELALG+N+RVAFMPWNGYNFED+I+VSER+ Sbjct: 773 TSFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERI 832 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 ++D FT+ HI E +R+ K G EE TADIP+V E AL+ LDESGIV +G V+ G I Sbjct: 833 TKDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMI 892 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 LVGK +PKGE + TPEE+LLRAIFG+KA V + SL P + GTVIDV+VFT+ G EKD Sbjct: 893 LVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKD 952 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA---------GGVEAEKLDKLP 993 R L E + + + + L +L R+ ++L G + ++ D++P Sbjct: 953 ARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIP 1012 Query: 994 RDRWLEL---------GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 ++ + +E QN E + E K ++ E K + + D L Sbjct: 1013 KEEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPN 1072 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 GV+K VK+Y+A KR+++ GDKMAGRHGNKG++S I P+ DMPY +G PVDIVLNPLGVP Sbjct: 1073 GVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVP 1132 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQ----QEVAKLREFIQRAYDLGADVRQKVD 1160 SRMNIGQILE HLG+ K G +I +ML+ + + + + G D Sbjct: 1133 SRMNIGQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINGKDPLTIHV 1192 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 L + SDEE++ A++ KG+ +A PVF+G + + +L +L + G++ LYDGRTGE+ Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 V VGYMYM+KL+HLVD+K+HARSTG YSLVT QP+GGKA FGGQRFGEMEVWALEA Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 YGAA+TL+EMLT+KSDD+ GR Y+ I G E +PE+F VL KE++SL ++I + Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINI 1371 >UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Tax=Bacteroidetes RepID=RPOB_SALRD Length = 1287 Score = 1176 bits (3041), Expect = 0.0, Method: Composition-based stats. Identities = 598/1359 (44%), Positives = 824/1359 (60%), Gaps = 122/1359 (8%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 R+ F P+V D P L +QL +F F++ D GL+A F FPI+ Sbjct: 21 RESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPIKDNRDRYT 80 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L++V+Y L P V+EC +G+TYS PL+ LRL + E + EQEVY+G + Sbjct: 81 LEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLT-SKEEEGGEEAIEAIEQEVYLGTL 139 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P MTD GTF++NG ERVIVSQLHRSPG FF+ + HS+G L++AR+IP+RGSW++F Sbjct: 140 PFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKE---IHSNGTELFSARVIPFRGSWMEFS 196 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 D +D L+ +DR++K+P T +LRAL + + E+I+ +F +I D E L Sbjct: 197 TDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDEDEF----EEHL 252 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 E A+ V++ + +E Sbjct: 253 GRELATSVTIEKTIEIVDEDTG------------------------------EVVDEEME 282 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD---HGPYISETLRVDPTNDRLSAL 363 E++ A EL +L + R+ + + D + ETL+ D ++ AL Sbjct: 283 REVLLPAEHELEEGDWEELDEYDVSRLYLVREDVEDEALDKSTLVETLQKDSSHTEEEAL 342 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 IY +R E P ++A E LFF+EDRYDL VGR + N L + +L+K+ Sbjct: 343 EVIYEKLRGSEAPDLDSAREALERLFFNEDRYDLGDVGRHRMNARLDVDVDTDEKVLTKE 402 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 D++ ++++LI ++NG+ DDIDHL NRR++SVGE +QF +GL R+ R +KER++L D Sbjct: 403 DVVGIVRELIRLQNGESTADDIDHLSNRRVKSVGEQLGSQFSLGLARMARTIKERMNLRD 462 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 D P+D++NA+ I + + FFG++QLSQFMDQ N L+E+THKRR+SALGPGGLTRERA Sbjct: 463 ADKFTPKDLVNARTIESVINTFFGTNQLSQFMDQTNALAEMTHKRRMSALGPGGLTRERA 522 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 GFEVRDVH THYGR+CPIETPEGPNIGL+ SL V++ N++GFLETPYR V DG VTD + Sbjct: 523 GFEVRDVHHTHYGRLCPIETPEGPNIGLMLSLCVHSTINDFGFLETPYRVVEDGRVTDRV 582 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 YLSA EE +AQAN+ + ++GHF D V CR +G+ + ++VDYMDV+ Q+VS Sbjct: 583 EYLSAEEEDQATVAQANAPIGDDGHFERDEVRCRHQGDFPIVEPEEVDYMDVAPNQIVSP 642 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 ASL+PFL H+DANRALMG+NMQRQ VP LR+D P+VGTG+E VA DS VA+ GV Sbjct: 643 SASLVPFLSHNDANRALMGSNMQRQGVPLLRSDSPIVGTGLEGRVAKDSRSCVVAEGEGV 702 Query: 724 VQYVDASRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 V+YVDA R+V++ +E++ + Y LTK+ R+NQ TC+NQ P V G+ VE G Sbjct: 703 VEYVDAERLVVRYDEEQDKTDLTFGEPVQEYELTKFRRTNQGTCMNQKPIVQAGDRVEEG 762 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +VL DG + + GELALG+N+ AFMPW+GYN+ED+I++SER+V +D +T++HI+E Sbjct: 763 EVLTDGFAMEKGELALGKNVLCAFMPWHGYNYEDAIVISERLVADDVYTSVHIEEFEHEV 822 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 RDTK G EE+T +IPNV E A LDE GIV +GAE+T GDI+VGK+TPKGET TPEEK Sbjct: 823 RDTKRGEEELTREIPNVSEEATKDLDERGIVRVGAEITPGDIIVGKITPKGETDPTPEEK 882 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEK--------------DKRA 945 LLRAIFG+KA DVKD+SL+ G+ G VID ++F+R ++ Sbjct: 883 LLRAIFGDKAGDVKDASLKAKPGMEGGVVIDTRLFSRRELDPASKKMEEKRLENIESDHE 942 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---LDKLPRDRWLELGL 1002 ++ ++ + +K + AGL R VL+ G + E+ + P D Sbjct: 943 RKLADLNERFWEKFFALVEDATSAGLEDREGEVLLTEGADFEEDAFDEVDPSDLSTRAEF 1002 Query: 1003 T-DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 T DEE +Q+ L Y + + E + ++ ++ GD+L GV+++ KVY+A K++I+ Sbjct: 1003 TEDEELNDQISTLLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKVYVARKKKIE 1062 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDKMAGRHGNKGVI+KI P+EDMP+ ++GTPVD+VLNPLGVPSRMN+GQI ET LG A Sbjct: 1063 VGDKMAGRHGNKGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQIYETLLGWAG 1122 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G K + + + + +++A Q D R G P Sbjct: 1123 DRLGVKYATPIFDGASLEDVGDELEKAGLPRDGKVQLYDG---------------RTGEP 1167 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 TVG +YM+KL HLV+D Sbjct: 1168 FDE---------------------------------------KTTVGQIYMMKLEHLVED 1188 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 KMHARS G YSL+TQQPLGGKAQFGGQR GEMEVWAL AYGA+ TLQEMLT KSDDV GR Sbjct: 1189 KMHARSIGPYSLITQQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLTFKSDDVEGR 1248 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ Y++IV G + PG+PESFNVL++E++ LG+ + L+ Sbjct: 1249 SEAYESIVKGENLPSPGVPESFNVLVRELQGLGLEVTLD 1287 >UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189 Tax=cellular organisms RepID=RPOBC_WOLTR Length = 2839 Score = 1149 bits (2971), Expect = 0.0, Method: Composition-based stats. Identities = 656/1421 (46%), Positives = 889/1421 (62%), Gaps = 94/1421 (6%) Query: 12 RKDFGKRPQVLD-VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 R + + + D + L+ +Q +S++ F + G LE+ FRSVFPI + +++ Sbjct: 16 RISYSRSIDLKDSLLDLVKVQKESYKSFTPGN-HGNERLESIFRSVFPINDPLHRATIEF 74 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK------------ 118 +S R+ P +D EC RG+T+SA + +RLVI + K IK Sbjct: 75 ISCRIDNPKYDESECIKRGITFSARVIASIRLVIMQDGISLDEYKSIKGSGDHSKLSTII 134 Query: 119 ----EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 EQEV+ E+P+MTD GTF+ING E+VIVSQ+HRSPGVFFDSDKGKT++SGK++Y+A Sbjct: 135 KFIGEQEVHFCELPMMTDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKLIYSA 194 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLD EFD KD L+ RIDR+RKLP +++L+AL + ILD F+EK+ + Sbjct: 195 RVIPYRGSWLDIEFDVKDLLYFRIDRKRKLPISVLLKALGLSNSDILDRFYEKIKYIKYK 254 Query: 235 NKLQMELVPERLRGETASFDIEA-NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 N ++ VP++ +G FD+ G V + RIT+R ++L D++K VP + I Sbjct: 255 NSWKVPFVPDKFKGVRLPFDLMDVEGNVLFKANVRITSRLAKKLHDDELKEYLVPFDSIC 314 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G +A+D ID + I +A + ++ + KL I L ++L GPYI TL + Sbjct: 315 GLFLAEDLIDSVSSTKILSAGESIKIEDVKKLELLSIGEISVLNIDNLSVGPYILNTLFL 374 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 D AL EIY+++RPGE P E E F NLFF+ + YDLS +GR+K N L + Sbjct: 375 DENMSYQDALYEIYKVLRPGEVPVLEIVEEFFHNLFFNPEYYDLSNIGRLKLNSYLGLDY 434 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 E +L+ +DII++++K++ +R+G+G VDDIDHLGNRR+RSVGE ENQFR GL+++ER Sbjct: 435 DEDLTVLTHEDIIEIVRKIVLLRDGQGSVDDIDHLGNRRVRSVGEFIENQFRAGLLKLER 494 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 AV + +S LD + D IN K ++ +++FF SSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 495 AVIDSMSTSSLDKVSSPDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHKRRLSAL 554 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGLTR+RAGFEVRDVHPTHYGR+CPIETPEG NIGLINSL++YA+ N+YGF+E+PYRK Sbjct: 555 GPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARVNKYGFIESPYRK 614 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V + V TD+I YLSAI+EG Y IA A++ LD F++D++ CR G + S DQV Y+ Sbjct: 615 VINRVATDQIEYLSAIDEGLYYIADASAKLDNNNRFIDDMLYCRYAGNFVMVSSDQVSYI 674 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DVS +QV+SV ASLIPFLE+DDANRALMG+NMQRQAVP L+ PLVGTG+E VA SG Sbjct: 675 DVSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAPLVGTGIESFVASGSG 734 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 +AKR G+V D++ IVI+ ++E G+DIY+L K+ RSN NTCINQ P V + Sbjct: 735 AVVLAKRDGIVDSSDSNSIVIRAFDEERVNY-LGVDIYHLKKFQRSNHNTCINQKPLVRI 793 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V+ GDV+ADGP+ + GELALGQN+ VAFM W GYNFEDSI++S +V++D FT+IHI Sbjct: 794 GDYVKEGDVIADGPAINSGELALGQNLLVAFMSWQGYNFEDSIIISSEIVKKDLFTSIHI 853 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +E CV DT LG E+IT IP V E L LD SGIV IG V G ILVGK+TPK Sbjct: 854 EEFECVVHDTPLGSEKITRAIPGVNEENLYHLDNSGIVKIGTRVGPGYILVGKITPKPSL 913 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 L PE KLL IFGEK+ D DSSL V GTVIDVQVFTR GVE+++RAL I++ ++ Sbjct: 914 LLPPETKLLMTIFGEKSFDCADSSLYTSPDVEGTVIDVQVFTRRGVEENERALLIKQKEM 973 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGGV-EAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 +K+ + + + ++ +LV + EKLD + R++W +GL + Q++ Sbjct: 974 NDLEKERDYIINVASEYFYDELKKLLVHSCSQDQEKLDAIEREQWWGIGLKNRSISEQVK 1033 Query: 1013 QLAEQYDELKH------------------------EFEKKLEAKRRKITQGDDL-----A 1043 L + +D+ K A + + GD + Sbjct: 1034 NLKKDFDKKVSNTIAQFKQKVEKLDEGYDLPQGVLMSVKVFIAVKHSLQPGDKMAGRHGN 1093 Query: 1044 PGVLKIV--------------------------KVYLAVKRRIQPG---DKMAGRHGNKG 1074 GV+ V ++ + G K+ R GN Sbjct: 1094 KGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQILETHVGWACKKLGERVGN-- 1151 Query: 1075 VISKINPIE-DMPY------DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI-GD 1126 ++ +IN I D D N V + +I ++ + + KG+ D Sbjct: 1152 ILDEINKINSDFCKEIRSLDDNNFAKFAAVYFDNKKTEEVRDDEITDSLVNIPNKGLLND 1211 Query: 1127 KINAMLKQQQEVAKL-----REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 ++NA+++ K R F+ Y G+DV ++ S+ ++ A LR G+P Sbjct: 1212 ELNALVENYLNSCKSAYDNLRSFLIEVYSCGSDVSICNNIRDISNSNLIEFAHKLRNGIP 1271 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 +A PVF+G K+ I +L L L SGQ YDGRTGE+F+R VTVGYMYMLKL+HLVDD Sbjct: 1272 VAAPVFEGPKDKNIIKLFTLAGLDPSGQTEAYDGRTGEKFDRKVTVGYMYMLKLHHLVDD 1331 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARS G YSLVTQQPLGGK+ FGGQRFGEME WAL+AYGAAYTLQEMLTVKSDD+NGR Sbjct: 1332 KIHARSVGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDINGR 1391 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K+Y++I+ G+ E G PESFNV++KE+RSL +N+ L+ Sbjct: 1392 VKIYESIIKGDSNFECGTPESFNVMIKELRSLCLNVALKQN 1432 >UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax=Bacteroidetes RepID=RPOB_CYTH3 Length = 1291 Score = 1142 bits (2953), Expect = 0.0, Method: Composition-based stats. Identities = 601/1381 (43%), Positives = 843/1381 (61%), Gaps = 145/1381 (10%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSG 64 + +RK F K ++ P L IQ+ SF+ F + D + GL F FPI Sbjct: 7 QNLRKSFAKTRSTVEYPDFLDIQVRSFKDFFQIDTPAENRFKEGLYKVFAENFPISDSRD 66 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 N L ++ Y + P ++V EC RG+TY+ PL+ KLRL +++ + EQEV++ Sbjct: 67 NFILDFIDYNIDTPKYNVDECIDRGLTYAVPLKAKLRLTCNDKDNEDFQT---IEQEVFL 123 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G IP MT+ G+FVING ERVIVSQLHRSPGVFF K H++G LY+AR+IP++GSW+ Sbjct: 124 GNIPYMTERGSFVINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARVIPFKGSWI 180 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVP 243 +F D + +F IDR++K P T +LRA+ Y + + ILDLF E ++ + Sbjct: 181 EFATDVNNVMFAYIDRKKKFPVTTLLRAIGYGSDKDILDLFGLSEEVEATKANIKKAI-- 238 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 GR++ AR +R +D V + + Sbjct: 239 ----------------------GRKLAARVLRTWTEDFVDED------------TGEVVS 264 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN-DLDHGPYISETLRVDPTNDRLSA 362 E++ + + + + + +SG K I + ++ I TL+ D +N A Sbjct: 265 IDRNEVLLERDSIIKEEDINIIVESGSKSIILHREDVNIADYTIIYNTLQKDNSNSEKEA 324 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 + +IYR +R + P + A + NLFFS+ RYDL VGR + N+ L +L+K Sbjct: 325 VEQIYRQLRNTDAPDEQTARDIIHNLFFSDKRYDLGEVGRYRINKKLGSGMGSEVKVLTK 384 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 +DII+++K LI + N + VDDIDHL NRR+R++GE +QF VGL R+ R +KER+++ Sbjct: 385 EDIINIVKYLIGLINSRAVVDDIDHLSNRRVRTMGEQLYSQFSVGLARMARTIKERMNVR 444 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 D + P D+INA+ +S+ + FFG++QLSQFMDQ NPL+EITHKRR+SALGPGGL+RER Sbjct: 445 DNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRMSALGPGGLSRER 504 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV--VT 600 AGFEVRDVH THYGR+C IETPEGPNIGLI+SL V+A+ N GF+ETPYRKV DG+ V Sbjct: 505 AGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNSMGFIETPYRKVIDGIVDVK 564 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 ++ +L+A EE IAQAN+ D+ G+F+ D + R +G+ + + D+VD +D++T Q+ Sbjct: 565 NQPVFLTAEEEDGAHIAQANAMYDDNGNFISDRIKARYEGDFPVIAPDKVDLIDIATNQI 624 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 VSV ASLIPFLEHDDANRALMG+NMQRQAVP LR + P+VGTG+ER VA+DS +A+ Sbjct: 625 VSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLERRVAMDSRTLLIAEA 684 Query: 721 GGVVQYVDASRIVIK---VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 GVV++VDA+ I ++ +ED + ++ I Y+L K+ R+NQ+TCIN P + GE V Sbjct: 685 DGVVEFVDANEIKMRYDLTDEDRLVSFDSDIITYSLIKFRRTNQDTCINLKPVIQHGERV 744 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 ++G VL +G +TD GELALG+N+ VAFMPW GYNFED+I++SE+VV++D FT+IHI+E Sbjct: 745 KKGQVLCEGYATDKGELALGRNLMVAFMPWQGYNFEDAIVISEKVVRDDIFTSIHIEEFE 804 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 RDTK G EE+T++IPNV E A+ LDE+GI+ GAE+ GDIL+GK+TPKGE+ TP Sbjct: 805 LEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRTGAEIKEGDILIGKITPKGESDPTP 864 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD---KRALEIEEMQLK 954 EEKLLRAIFG+KA DVKD+S++ P + G VID ++F+R +KD K ++E ++ K Sbjct: 865 EEKLLRAIFGDKAGDVKDASMKAPPSLRGVVIDTKLFSRPKKDKDLRIKSKKQVETIKGK 924 Query: 955 QAKKDLSEELQILE-----------AGLFSRIRAVLVAGGVEAEKLDKLPR--------- 994 +K L+ Q++E G+ + +++ GV+ + + Sbjct: 925 YSKDLLALREQMIEKLAALLDGQTSQGVKHKFGDEVISKGVKFSRKNIEANVFPDKNPYR 984 Query: 995 ---------------DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 D ++ +D++ + +L + Y ++E K + +R + G Sbjct: 985 DESNYNVQEEANLLGDLIIDNWTSDKKINENVLRLVKNYLTKRNETAGKFKRERFTLEVG 1044 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L G++++ KVY+A KR+++ GDKMAGRHGNKGV+++I EDMP+ E+GTPVDIVLN Sbjct: 1045 DELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVRDEDMPFLEDGTPVDIVLN 1104 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQI ET LG+A K +G K + ++ ++ A + V Sbjct: 1105 PLGVPSRMNIGQIYETLLGLAGKKLGRKYATPIFDGASEEEVINELRDAGLPTIGRTKLV 1164 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D ++ FD Sbjct: 1165 D--------------------GLSGNPFD------------------------------- 1173 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 +PVTVG +YM+KL HLVDDKMHARS G YSL+TQQPLGGKAQFGGQRFGEMEVWALE Sbjct: 1174 ---QPVTVGVIYMMKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALE 1230 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 A+GAA LQE+LTVKSDDV GR K Y+ IV G + P +PESFNVL+ E+R L + I L Sbjct: 1231 AFGAANILQEILTVKSDDVVGRAKTYECIVKGENLPRPNIPESFNVLVHELRGLALEITL 1290 Query: 1340 E 1340 Sbjct: 1291 H 1291 >UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Tax=Chlamydiae/Verrucomicrobia group RepID=RPOB_PARUW Length = 1254 Score = 1138 bits (2942), Expect = 0.0, Method: Composition-based stats. Identities = 613/1366 (44%), Positives = 844/1366 (61%), Gaps = 161/1366 (11%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYSGNSE 67 R+ F + +++D+P L+ IQ+ S+ +F++ D GL+ F +FPI+SY + Sbjct: 8 RESFNDKEEIIDLPNLIEIQIKSYNQFLQADKFPDERENIGLQEVFTEIFPIKSYDEKTI 67 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++SY LG P ++ +EC RG+TY+ L+VK RL IKE+EVYMG I Sbjct: 68 LEFLSYNLGVPKYNPEECIRRGITYNVTLKVKFRLTDET---------GIKEEEVYMGTI 118 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF++NG ERV+VSQLHRSPG+ F+ ++ HS G V+Y+ RIIPYRGSWL+ Sbjct: 119 PVMTDKGTFIVNGAERVVVSQLHRSPGICFEQER---HSRGNVIYSFRIIPYRGSWLEGA 175 Query: 188 FDPKDNLFVRIDRR---RKLPATIILRALNYTTE-QILDLFFEKVIFEIRDNKLQMELVP 243 FD D + + IDR+ RK+ AT +RAL Y++ I++ FF Sbjct: 176 FDTNDLIHIYIDRKKRRRKILATTFIRALGYSSNSDIIEEFF------------------ 217 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 T R + + + + GK++A+D +D Sbjct: 218 --------------------------TTRKYKIKNEKEFAK-------LVGKILAQDVVD 244 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 E +G + A+ +L+ +L ++ +G I D D + + L DPT+ SAL Sbjct: 245 EESGLVFGKASEKLTTAMLKRIVDAGIDVIR--IAEDADETSPVIKMLAKDPTDSYESAL 302 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL---REEIEGSGIL 420 + YR +RPGEP T A S LFF RY+L VGR K N L +E + L Sbjct: 303 KDFYRKIRPGEPATLSNARSAIMRLFFDPKRYNLGRVGRYKLNSKLGCEINDEKLQTVTL 362 Query: 421 SKDDIIDVMKKLIDIRNG--KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 K+D+I +K LI +++G + +DDIDHLGNRR+RSVGE+ +NQ R+GL R+E+ ++ER Sbjct: 363 DKEDVIGALKYLIMLKSGSEEASIDDIDHLGNRRVRSVGELIQNQCRIGLARMEKIIRER 422 Query: 479 LSLGDL--DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ++L D DTL P +++AK +S +K+FFG SQLSQFMDQ NP++E+THKRR+S+LGPG Sbjct: 423 MNLFDFSSDTLTPGKIVSAKGLSGVLKDFFGRSQLSQFMDQTNPIAELTHKRRLSSLGPG 482 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI+SLS +A+ NE+GF+ETPYR V + Sbjct: 483 GLNRDRAGFEVRDVHTSHYGRICPIETPEGPNIGLISSLSSFAKINEFGFIETPYRIVRE 542 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 GVVTDEI Y++A +E VIAQA++ LDE F E + R KGE V +MDVS Sbjct: 543 GVVTDEIEYMTADQEEQCVIAQASAPLDEYHMFAEPICWARYKGEQFETDTKNVTHMDVS 602 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 +Q+VS+ LIPFLEHDDANRALMG+NMQRQ VP L+ P+VGTG+E A DSG Sbjct: 603 PKQLVSIVTGLIPFLEHDDANRALMGSNMQRQGVPLLKPTAPIVGTGLEARAARDSGAVL 662 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 +A GVV YVD +IVI +++ + Y L K+ RSN TCINQ P +G+ Sbjct: 663 IAHEDGVVDYVDGLKIVISPDDNRLEKR-----TYLLKKFIRSNAGTCINQRPLCHVGDK 717 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 ++ GDV+ADGP+TD GE+ALG+N+ VAFMPW GYN+ED+I++SE++++ED +T+++I+E Sbjct: 718 IKAGDVIADGPATDKGEVALGRNVLVAFMPWFGYNYEDAIIISEKLLREDYYTSLYIEEF 777 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 +RDTKLG EEIT DIPNV E L L++ GI+ IGAEV GD LVGK+TPK ET+L Sbjct: 778 ELTARDTKLGKEEITRDIPNVSEETLRNLNDDGIIRIGAEVKPGDTLVGKITPKSETELA 837 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG-VEKDKRALEIEEMQLKQ 955 PEE+LLRAIFG+KASDVKD+SL P G G V+DV+VF+R + K L E +LK Sbjct: 838 PEERLLRAIFGDKASDVKDASLIAPPGTEGVVMDVKVFSRRDRLSKTDDELVEEASKLKD 897 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGG--------------------VEAEKLDKLPRD 995 +++ L R+ A+L+ + + ++ L ++ Sbjct: 898 IQREYKSNQAQLRTEKHERVGALLLNETAPGNIVHRRTAEIIVDEGDLITQDLIEALEKE 957 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-DLAPGVLKIVKVYL 1054 +L + + + L Q+ Y+ E + + + + +GD DL PGV++ VKVY+ Sbjct: 958 SVEDLLMPENDIYTTLRQILHDYEIALQTVETQYKTQLEFMRKGDTDLDPGVIRQVKVYV 1017 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR++Q GDKMAGRHGNKGV+SKI P DMP+ G ++I+LNPLGVPSRMN+GQ+ E Sbjct: 1018 ASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLSTGQTIEIILNPLGVPSRMNMGQLFE 1077 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 THLG+AAK G + + + + K+ E ++ Sbjct: 1078 THLGIAAKHTGITVKSPVFEGFPEEKIWEMMK---------------------------- 1109 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 + G+P F LYDG +GE+F+ V VGY+YMLK Sbjct: 1110 --KAGLPEDGKFF------------------------LYDGCSGERFDNSVVVGYIYMLK 1143 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L+HLV DK+HAR+ G YSLVTQQPLGGKAQ GGQRFGEMEVWA EAYGAA+ LQEMLTVK Sbjct: 1144 LSHLVADKIHARAVGPYSLVTQQPLGGKAQMGGQRFGEMEVWAAEAYGAAHLLQEMLTVK 1203 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SDDV GRT++Y++IV G + ++ G PESFNVL+KE++ LG+N+ E Sbjct: 1204 SDDVAGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLNVYTE 1249 >UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria RepID=B2KEN1_ELUMP Length = 1270 Score = 1137 bits (2940), Expect = 0.0, Method: Composition-based stats. Identities = 594/1366 (43%), Positives = 817/1366 (59%), Gaps = 163/1366 (11%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSGNSELQ 69 +FG+ L +P LL +Q +SF F++ D GL+AAF VFPI++ G+ +L+ Sbjct: 5 NFGQISSKLSLPDLLDMQKESFVDFLQLDVAPTKRELKGLQAAFEDVFPIEAPDGSMKLE 64 Query: 70 YVSYRLGEPVF-DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 +V Y LG P + Q+ +R TYSAP++ +RL + +R+ G +K+ EQ+V + ++P Sbjct: 65 FVKYELGAPRYSTPQQAALRDGTYSAPMKAVMRLSVKKRD---GKLKEASEQDVTLCDLP 121 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSS-GKVLYNARIIPYRGSWLDFE 187 LMTD G FV NG ERV+VSQLHRSPG+ F+ D+ K S+ GK LY ARIIPYRG+W++F Sbjct: 122 LMTDAGCFVFNGAERVVVSQLHRSPGIIFEEDEEKKQSTLGKKLYVARIIPYRGAWIEFS 181 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 FD + L+VRIDR++K+ AT LRA T QI+ F++ E++ ++ + + Sbjct: 182 FDIMNALWVRIDRKKKVLATTFLRACGLETNAQIIQAFYDVEDVEVKPAEI------DNV 235 Query: 247 RGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 G A+ DI A G+V + Sbjct: 236 VGRYAADDIVDPATGEVLWNLDDKAA---------------------------------- 261 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR--VDPTNDRLSA 362 + ++ +++ + K+++ + N P I TL D A Sbjct: 262 ------MPMDDKIFKEMVER----KIKKVKIISGNPRQDDPGILATLENRKDQIRTSKEA 311 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFF-SEDRYDLSAVGRMKFNRSL------------ 409 +IY+ MR + +E AE+ +NL F + RYDLS VGR K N+ Sbjct: 312 QADIYKKMRGQDFVVKEQAEAFLDNLIFDNIRRYDLSYVGRYKINKKFASLFDIVENLKF 371 Query: 410 --LREEIEGSGILSKDDIIDVMKKLIDIRNGKG-----------EVDDIDHLGNRRIRSV 456 + + LS +DII +K L+ + G+ + DDIDHLGNRR+R + Sbjct: 372 KKFTKPTDKRRTLSAEDIIVTVKYLLALNAGEDAQKMYGEEIIFKTDDIDHLGNRRVRGI 431 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD 516 GE+ ENQ RVGL ++ + ++R++ +L + P+ ++NA+P+ A +K+FFG+SQLSQFMD Sbjct: 432 GELLENQIRVGLSQMAKTARDRMNK-ELASHTPRALVNAQPVQAIIKKFFGTSQLSQFMD 490 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 Q NPLSE+THKRR+SALGPGGL R+RAGFEVRDVH THYGRVCPIETPEGPNIGLI SL+ Sbjct: 491 QINPLSELTHKRRLSALGPGGLNRKRAGFEVRDVHHTHYGRVCPIETPEGPNIGLITSLA 550 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 Y++ N+YG +ETPYRKV G VTD YL+A +E + ++AQ+N+ L + G D+V+C Sbjct: 551 CYSKVNKYGLIETPYRKVNSGKVTDNFEYLTADQEDDLMVAQSNTPLTDSGKINTDMVSC 610 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R + + + S +VDYMDVS QV+SV A+LIPFLEHDDANRALMG NMQRQ VP L + Sbjct: 611 RVRSDYPIVSPSEVDYMDVSPLQVISVSAALIPFLEHDDANRALMGCNMQRQGVPLLLTE 670 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 PLVGTG+E VA DSG T A + G V + A +I ++ E +IY+L KY Sbjct: 671 APLVGTGIEHEVARDSGATISAAKPGRVVFAAADKIAVEPLEG------GAPEIYDLIKY 724 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RSNQ+TCINQ P V G+ V++G VLADGP+ G LALG+N+ V FM W GYN+ED+I Sbjct: 725 KRSNQDTCINQRPLVKAGDIVKKGTVLADGPAMKDGFLALGKNLLVGFMSWEGYNYEDAI 784 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 LVS ++V+ED FT++H+ E + +R+TKLG EEIT DIPN+G AL+ LD GIV Sbjct: 785 LVSHKLVKEDVFTSVHLHEFSIDARNTKLGAEEITRDIPNIGAEALAHLDADGIVIPSTV 844 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVGKVTPKGE QLTPEE+LL+ IFG+KA DV D+SLRVP G SG VI +VF Sbjct: 845 VEPGDILVGKVTPKGEQQLTPEERLLKVIFGKKADDVVDASLRVPPGTSGKVIGTRVF-- 902 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 + K K + ++ LE + + + + + Sbjct: 903 -------------VRKEKLTKAEEKARIKALEDEKTTNLETLKEQRKLALTNIKDS---- 945 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 ++ + + E++ Y +L+ + E + QGD+LA V K VKV++A Sbjct: 946 ------NVKDAKKEEERINALYKKLEKRVLEDFEREMEFSKQGDELAVTVNKSVKVFIAS 999 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 KR++ GDK++GRHGNKGV++KI P EDMP+ +GTP+DIVL+PLG+PSRMN+GQ+ ET Sbjct: 1000 KRKLMVGDKLSGRHGNKGVVAKILPEEDMPFLPDGTPLDIVLSPLGIPSRMNVGQLFETM 1059 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 LG AAK +G + +RE I++A + Sbjct: 1060 LGWAAKNLGYNAATPVFDGPTEETVREEIKKAKKALIEKGVP------------------ 1101 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + +I LYDGRTG+ FE VT+GYMY++KL Sbjct: 1102 -----------------------EKHLPDDYCRITLYDGRTGQPFEEKVTIGYMYIMKLI 1138 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 HLV+DK+HARSTG YSL+T+QPLGGKAQFGGQRFGEMEVWA+E YGA YTLQE LTVKSD Sbjct: 1139 HLVEDKVHARSTGPYSLITRQPLGGKAQFGGQRFGEMEVWAIEGYGATYTLQEFLTVKSD 1198 Query: 1297 DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 D GRTKMY++IV G +PG+PESF VL+KE+++LG+++EL + Sbjct: 1199 DFTGRTKMYESIVRGEAPQQPGVPESFKVLVKELQALGLSVELLKD 1244 >UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Tax=Bacteria RepID=RPOB_METI4 Length = 1289 Score = 1129 bits (2921), Expect = 0.0, Method: Composition-based stats. Identities = 616/1368 (45%), Positives = 831/1368 (60%), Gaps = 140/1368 (10%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSY 62 +K R +FGK + L +P L+ Q S+ F++ Q GL F VFPI+SY Sbjct: 2 NEKIQRINFGKIREGLSLPNLIEHQTKSYADFLQLSVAPQERKAEGLHGVFLEVFPIESY 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 G +L+YV+Y +GE F +C G TY+APL V RL + +KE++V Sbjct: 62 DGKVKLEYVNYEIGESKFSPIDCLRDGKTYAAPLYVTFRL---------KDEEGVKEEKV 112 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 YMGE+P+MT G+F+ING ERVIV+QLHRSPG+ F+ HS+GK LY+ RIIP RGS Sbjct: 113 YMGELPMMTPQGSFIINGAERVIVNQLHRSPGICFE---SSFHSNGKTLYSFRIIPDRGS 169 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 WL+ FD D L+V +DRR+K F + L Sbjct: 170 WLEVAFDTNDLLYVYLDRRKK-----------------RRKFLITTLLRALAAALSGPSS 212 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 P G R +E+ ++ + + +A KV+ + Sbjct: 213 P------------------LGSGGDEEIIRLFYTVEELNLSE-GIDEDKVATKVLVSEVK 253 Query: 303 DEST-GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 D ++ A ++ ++ +L G + I + D+ + + + L+ DPT D + Sbjct: 254 DPHNPDVVLARAYEPVTRSVVRQLLDVGIQSISVV---DVQYDDTLIKCLKKDPTKDPVE 310 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 AL EIYR +RPG+PPT A+ L + L RYDL VGR K N+ L + IL+ Sbjct: 311 ALKEIYRRLRPGDPPTESNAKLLLKRLLLDPKRYDLGRVGRYKLNQKLNIQVDPDIRILT 370 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 +D++ + LI +R G+G DDIDHLG+RR+R+VGE+ NQ R+GL R ER VKER++L Sbjct: 371 WEDLVAATRYLIKLRKGEGITDDIDHLGSRRVRTVGELVANQCRMGLARTERLVKERMTL 430 Query: 482 GDLDT--LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 D++T + PQ +IN K +SA +++FF SQLSQ MDQ NPLSE+THKRR+SALGPGGL+ Sbjct: 431 FDVNTEGMTPQKLINPKALSATIRDFFARSQLSQLMDQINPLSELTHKRRLSALGPGGLS 490 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI +++ Y++ N+YG LETPYRKV +G V Sbjct: 491 RERAGFEVRDVHPSHYGRICPIETPEGPNIGLIATMASYSRFNDYGILETPYRKVLNGKV 550 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 T+EI Y +A +E NYVIA AN+ + E+G ++ V R + E R++V+YMDVS +Q Sbjct: 551 TNEIVYFTADQEENYVIAMANTAVSEDGTILDQRVAVRFRREFMEVEREKVEYMDVSPKQ 610 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VSV A LIPFLEHDDANRALMG+NMQRQAVP ++ + P+VGTG+E VA D V++ Sbjct: 611 IVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLIQPEAPIVGTGIEERVARDIQAVIVSE 670 Query: 720 RGGVVQYVDASRIVIKVN----EDEMYPGEAGID----IYNLTKYTRSNQNTCINQMPCV 771 G V V I++ E + + G + +Y L K+ RSN TCINQ P V Sbjct: 671 VDGTVSSVTGKEIIVTPTGSPVEQKKKKSKQGSEREGIVYKLNKFMRSNAGTCINQKPIV 730 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 G+ V++GDVLADGPST GELALG+N+ VAFMPWNGYNFED+I+VSERVV+ED FT+I Sbjct: 731 KKGQVVKKGDVLADGPSTQNGELALGRNLLVAFMPWNGYNFEDAIIVSERVVKEDLFTSI 790 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 +I E V+RDTKLGPEEIT DIPNVG+ AL L GI+ +GAEV GDILVGK+TPK Sbjct: 791 YIDEFEIVARDTKLGPEEITRDIPNVGDEALKNLGPDGIIRVGAEVKPGDILVGKITPKS 850 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD--------K 943 ET+L PEE+LLRAIFGEKA+DVKDSSLRVP+G G V+DV+V + + K Sbjct: 851 ETELAPEERLLRAIFGEKAADVKDSSLRVPSGTYGIVMDVRVSSGTARVRKEKINASEAK 910 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + ++ E + Q +++L EEL + + + L VE ++ + ++ L Sbjct: 911 QKIKEIEERYDQKEEELREELTQALSNILLNEKIPLDVVNVETGEIIIPANRKITKVLLR 970 Query: 1004 D-----EEKQNQLEQLAEQYDELKHEFEKKLEAKRR-------KITQGDDLAPGVLKIVK 1051 ++ + + + E+ FE K E R +I G+D PG++K VK Sbjct: 971 KMAQAYDKIEIDPSPIRSKIFEIIGNFEAKFEQLRNDRELELDQIESGEDTEPGIIKQVK 1030 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V++A KR++ GDKMAGRHGNKGV+SKI P+EDMPY +GTPVDIVLNPLGVPSRMN+GQ Sbjct: 1031 VFIANKRKLSVGDKMAGRHGNKGVVSKIVPVEDMPYLPDGTPVDIVLNPLGVPSRMNVGQ 1090 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 +LETHLG+AAK +G + + + K+REF+ +A D T Sbjct: 1091 VLETHLGIAAKKLGFNVATPVFDGVKEEKIREFLVKAGMDEDGKSILYDGRTGE------ 1144 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 +++ + V VG +Y Sbjct: 1145 ----------------------------------------MFN--------QRVVVGMIY 1156 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 M+KLNH+V DK+HAR+ G YSLVTQQPLGGKAQ+GGQRFGEMEVWA+EAYGAAY LQE+L Sbjct: 1157 MMKLNHMVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWAMEAYGAAYILQELL 1216 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TVKSDDV GRT++Y++IV G + +E PESFNVL+KE++ L + + + Sbjct: 1217 TVKSDDVQGRTRIYESIVKGENYLETTTPESFNVLIKELQGLCLEVNI 1264 >UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Tax=Bacteria RepID=RPOB_CHLPD Length = 1312 Score = 1120 bits (2897), Expect = 0.0, Method: Composition-based stats. Identities = 608/1399 (43%), Positives = 817/1399 (58%), Gaps = 182/1399 (13%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFPIQSYSGNSELQ 69 DF K V+D P LL +QLDSF FI+ GLE RS FPI G L+ Sbjct: 22 DFSKIQSVIDPPDLLKVQLDSFHNFIQDSVPLAKRRDQGLERVLRSAFPITDTRGLYLLE 81 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 Y+SY +P + V++C RG+TY L+VKL+L Y+ E E K+ +QEVY+G IP Sbjct: 82 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLS-YKDEPDEADWKETIQQEVYLGRIPY 140 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 MT+ GTF++NG ERV+V+QLHRSPGV F H +GK +Y+A+I+P RGSW++F+ D Sbjct: 141 MTERGTFIVNGAERVVVAQLHRSPGVVFSE---AIHPNGKKMYSAKIVPTRGSWIEFQTD 197 Query: 190 PKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 + +FV ID+++ T +LRA+ + E IL LF ++ + E+L G Sbjct: 198 INNQIFVYIDQKKNFLVTALLRAIGFAKDEDILGLF------DLVEEVKITSAKKEQLIG 251 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 + + DI +D TGE Sbjct: 252 QYLASDI----------------------------------------------VDMQTGE 265 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLF----TNDLDHGPYISETLRVDPTNDRLSALV 364 + +A ++ D++ ++ +G+K + + + I T+ D + AL Sbjct: 266 V-VSARTAITEDIVDQIIAAGYKSVRVMKSFSGNDKGPDKSIIINTILNDNSATEEEALE 324 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG------ 418 +Y +R E P +AA S E FF++ +YDL VGR + + L +E E G Sbjct: 325 IVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIRKKLSKEFEELHGYLDGQP 384 Query: 419 ------------------------------ILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 +L+ DII V+ LI + NG+ EVDD+DHL Sbjct: 385 ELKKLSDTIYEKILHTIQSFSDEPIGGDILVLTHYDIIAVIYYLIKLVNGQAEVDDVDHL 444 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 NRR+RSVGE QF +GL R+ + V+E+L+ D D + P D+INA+ +S+ V FF + Sbjct: 445 ANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPSDLINARTVSSVVSSFFAT 504 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQLSQFMDQ NPL+E+T+KRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPN Sbjct: 505 SQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPN 564 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 IGLI+SLSVYA+ N+ GF++TPYR VT+GVVTD + LSA +E N + + LDE Sbjct: 565 IGLISSLSVYAEINDKGFIQTPYRVVTNGVVTDTVLMLSAEDEENKITVPVSIPLDENMK 624 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 + V R+KG+ L + V+YMDVS Q+VS A+LIPFLEHDD NRALMGANMQRQ Sbjct: 625 IAIESVQARTKGDYPLVPAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQRQ 684 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE-------M 741 AVP L A+ P+VGTGME VA DS +A+ G+V V A I ++ + D + Sbjct: 685 AVPLLTAEAPIVGTGMESKVARDSRSVILAEGDGIVDDVTAEYIKVRYDIDADTDVRLSL 744 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 + G+ Y L K+ RSNQ+TCI+Q P + +G+ V +GDVLAD ST+ GELALG+N+ Sbjct: 745 LDPDEGLKTYKLIKFKRSNQDTCISQKPLIHIGQRVSKGDVLADSSSTENGELALGKNVL 804 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 VAFMPW GYNFED+I++SER+V +D FT+IHI E RDTK G E+ T DI NV E A Sbjct: 805 VAFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSEDA 864 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L LDE+GIV IGAEV DILVGK+TPKGE+ TPEEKLLRAIFG+K+SDVKD+S+ VP Sbjct: 865 LRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHVP 924 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEA-----------G 970 G+ G VI ++F+R +IE ++ K K+ + L+ G Sbjct: 925 AGMKGIVIKTKLFSRKKKVGLDIKEKIEILEKKYDYKEYDLRKKFLKRLKQLLEGKTSTG 984 Query: 971 LFSRIRAVLVAGGVEA-----EKLDKLPRDRWLELGLT---DEEKQNQLEQLAEQYDELK 1022 ++S +LVA E+ +P ++ E+ + L +++ Sbjct: 985 IYSDKGKLLVAEDAVYDDSVLERFTAIPFLESIDFVKGVTQSEKVNENVMLLVKEFRLKL 1044 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 + + + ++ K+ GD+L PG+ ++ KVY+A KR+IQ GDKMAGRHGNKGV+ KI PI Sbjct: 1045 KDLNDERDNEKYKLNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVVGKILPI 1104 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMP+ ENG PVDIVLNPLGVPSRMNIGQ+ ET LG A K +G K + +++ Sbjct: 1105 EDMPFMENGKPVDIVLNPLGVPSRMNIGQLYETSLGWAGKELGVKFKTPIFNGATYQEVQ 1164 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 + +++A ++DG + + Sbjct: 1165 QELEKAGLP----------------------------SHGKVSLYDGRTGEQFDDE---- 1192 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 VT+GY+YMLKL+HLVDDK+HARSTG YSL+TQQPLGGK Sbjct: 1193 ----------------------VTIGYIYMLKLSHLVDDKIHARSTGPYSLITQQPLGGK 1230 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES 1322 AQFGGQRFGEMEVWALEAYGAA L+EMLTVKSDDV GR K Y+ IV G + EPG PES Sbjct: 1231 AQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPEPGTPES 1290 Query: 1323 FNVLLKEIRSLGINIELED 1341 FNVL++E++ LG+ I ++D Sbjct: 1291 FNVLVRELQGLGLEIRIDD 1309 >UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Tax=Aquificales RepID=RPOB_AQUPY Length = 1469 Score = 1109 bits (2867), Expect = 0.0, Method: Composition-based stats. Identities = 653/1465 (44%), Positives = 897/1465 (61%), Gaps = 161/1465 (10%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 RK FG+R ++L+ PYLLSI +SF+ F++ GLE FR+ FP + N Sbjct: 8 RKFFGRRTEILEPPYLLSIPKNSFENFVQLKVNPYKRKNVGLEHIFRTSFPFKDPDENFI 67 Query: 68 LQYVSYRLG---------EPV-----------------------FDVQECQIRGVTYSAP 95 L+Y+ Y +G +P F +EC+++G+TYSAP Sbjct: 68 LEYLGYEIGDWECNRCGYKPKDDLLGGWDVDCPECGAKLVYKEKFTPEECKLKGLTYSAP 127 Query: 96 LRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGV 155 LRV L+L + + + ++VY GE+PLMTDNG+F+INGTER+I++QL RS GV Sbjct: 128 LRVMLQL----KAKTKNGYRTFPPRKVYFGEVPLMTDNGSFIINGTERIIINQLIRSSGV 183 Query: 156 FFDS--DKGKTHSSGKVLYNARIIPYRGSWLDFEFDP-KDNLFVRIDRRRKLPATIILRA 212 FFD +K K + ++LY A IIP +GS ++FE D + RIDR+ KL A +LRA Sbjct: 184 FFDEKEEKQKDATITRILYRASIIPDKGSRVEFELSGATDLISARIDRK-KLSAISVLRA 242 Query: 213 LNY-TTEQILDLFFEKVIFEIRDNKLQM------ELVPERLRGETASFDIEANGKVYVEK 265 T IL F+E V I +K E PE L ++ K+ Sbjct: 243 FGLETAYDILKPFYEGVRKYIVKDKYLYDAETGEEFTPEDLEHHYIFAILKFKAKIAGFG 302 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 + + ++ +L+ +D+ E++ ++ + Sbjct: 303 TSKEREIIEERYIEEWEELV--------------RILDDERIEVLSVTSVPRENVI---K 345 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTND-RLSALVEIYRMMRPGEPPTRE----- 379 S G ++TL T+ ++V R L+E+Y+ +R E T E Sbjct: 346 SPYGKSLVDTLATDTSPRDADRRSPVKVPAEYTLRDYGLMEMYKKLRHIEALTMEIDSII 405 Query: 380 -AAESLFENLFFSEDRYDLSAVGRM----------------------------------- 403 A F F RYDLS VGR+ Sbjct: 406 ERARVYFNVFFRDLKRYDLSRVGRVKINAKVHNIPKVLKPTDIDLLDNLPPLALAEDYGE 465 Query: 404 -----KFNRSLLREEIEGS-------------GILSKDDIIDVMKKLIDIRNGKGEVDDI 445 + + LL+E + L D+I+++K LID+R+G+ + DDI Sbjct: 466 YKAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHGRVKKDDI 525 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVK 503 HLGNRR+RSVGE+ ENQ R+G+ ++E+ ++R + + L PQD IN + ++ A+ Sbjct: 526 AHLGNRRVRSVGELLENQARLGIAKMEKVFRDRSATIHPEQPDLKPQDFINPRYVTNAIA 585 Query: 504 EFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 +F + QLSQ++D NPLSE+THKRR+SALGPGGLTRE A FE+RDVHP+HYGR+CPIET Sbjct: 586 DFLKTGQLSQYLDNTNPLSELTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIET 645 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 PEG NIGL+ S +VYA+ NEYGFL TPYRKV +G VTD+I +L+A EE NYVIAQ ++ Sbjct: 646 PEGQNIGLVTSPTVYARVNEYGFLITPYRKVENGRVTDKIEWLAAYEEENYVIAQ-STPT 704 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 DEEG + V R K + L +QVDY+DVS +QV+S +SLIPFLEHDDANRALMG+ Sbjct: 705 DEEGRIKAEFVLARHKNDIRLVKPEQVDYIDVSPRQVISPSSSLIPFLEHDDANRALMGS 764 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY- 742 NMQRQAVP + PLVGTGME+ +A DS VAKRGGVV+ VD S+I+++VN +E+ Sbjct: 765 NMQRQAVPLIFTQAPLVGTGMEKKIARDSHAVVVAKRGGVVEEVDGSKIIVRVNPEEINL 824 Query: 743 --PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 P + GIDIY L K+ R+NQ TC+NQ P V GE VE+G ++ADG STD GELALG+++ Sbjct: 825 EDPLDIGIDIYELRKFERTNQKTCVNQRPIVKKGERVEKGQIIADGHSTDRGELALGKDV 884 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 VAFMPW GYNFED+I++SER+V+ED +T+IHI+EL +R+TK+G EEIT IP V E Sbjct: 885 LVAFMPWRGYNFEDAIVISERLVKEDVYTSIHIEELEVEARETKVGDEEITRQIPGVPER 944 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 AL+ LDE GIV +G V GDILVGKVTPKGET+LTPEEKLL+AIFGEK DVKD+SLR Sbjct: 945 ALAHLDEHGIVRVGTYVKPGDILVGKVTPKGETRLTPEEKLLQAIFGEKTKDVKDASLRC 1004 Query: 921 PNGVSGTVIDVQVFTRDGVE--KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 P GV G VIDVQVFTR G + KD A ++E +L+ +++L ++ +L +G+ ++ + Sbjct: 1005 PPGVEGIVIDVQVFTRKGGKAAKDMLAQKVEREELEALERELEKKKNLLMSGVEKVLKGL 1064 Query: 979 LVAGGVEAEKLDKLPRDRW-------------------LELGLTDEEKQNQLEQLAEQYD 1019 ++ + + + E TDEE ++ ++ + Sbjct: 1065 ILGKKTDKDVKIGKKEIKKGTEITEEIFKEYSQYILARPENFFTDEELIKKIREIYTRSR 1124 Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 +K + K+ + + DL PGV+ +VKV++A KR+I+ GDKMAGRHGNKGVIS + Sbjct: 1125 TQIDMLQKVYQEKKETLLKRRDLPPGVITLVKVFIANKRKIKVGDKMAGRHGNKGVISVV 1184 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 P+EDMP+ +GTPVDIVLNPLGVPSRMN+GQILETHLG AAK +G KI M+++ ++ Sbjct: 1185 LPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKELGKKIGEMIEKGRDRK 1244 Query: 1140 KLREFIQRAYDLGADVRQK-----VDLSTFSDEEVMRLAENL-RKGMPIATPVFDGAKEA 1193 + E+++ Y +G + + L++ S+EE + + ++G+P+ATP F+GA E Sbjct: 1245 AITEYLKEIYAVGDENGENAKFIEEFLNSLSEEEFWSVVRDYAQRGIPMATPAFEGADEK 1304 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 +KELLK LP SG+ LYDGRTGE F+ VTVGYM+MLKL H+VDDK+HAR+TG YSL Sbjct: 1305 AVKELLKKAGLPESGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDKIHARATGPYSL 1364 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 VTQQPLGG+AQFGGQR GEMEVWALEA+GAAYTLQEMLTVKSDDV GR+K+Y+ IV G + Sbjct: 1365 VTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDVEGRSKVYEAIVKGKY 1424 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIE 1338 PG+PESF VL++E++ L +N++ Sbjct: 1425 TYTPGIPESFKVLVRELKGLSLNVK 1449 >UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella RepID=D1BP72_VEIPT Length = 1386 Score = 1105 bits (2858), Expect = 0.0, Method: Composition-based stats. Identities = 584/1404 (41%), Positives = 803/1404 (57%), Gaps = 154/1404 (10%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M KR R + K +V+ +P+LL IQ S++ F+E GL+ F + PI+ Sbjct: 1 MFKPEQVGKRTRYTYAKINEVIKMPHLLDIQRKSYEWFLES------GLQNIFNDISPIK 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 SGN L + + LGEP +D+ EC+ R TY+APLRV +RLV + E DIKEQ Sbjct: 55 DNSGNLVLSFEGFSLGEPKYDINECKNRDATYAAPLRVNIRLVNNDPENM-----DIKEQ 109 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMTD GTF+ING ERVIVSQL RSPGV+++ + + G LY++ +IP R Sbjct: 110 EVFMGDFPLMTDTGTFIINGAERVIVSQLVRSPGVYYNKE---IDTMGNRLYDSTVIPNR 166 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEI------- 232 G+W++ E D + + VRIDR RKLPAT+++RAL + T + ILDLF+ E Sbjct: 167 GAWIELETDASEVVAVRIDRNRKLPATVLVRALGWDTNESILDLFWNGKTDEDGLPVYDE 226 Query: 233 ------------RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLE 278 ++ +E+ + GE + + N ++ + R AR R Sbjct: 227 RIVRTLEKDTTQSADEALVEIYKKLRPGEPPTVESARNLFDNLFFDARRYDLARVGRYKL 286 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 + + + G+ +A+ +D TGE+I A +++ G ++++ + Sbjct: 287 NKKLGW----RQRMLGQTLAQPIVDPETGEIILDAGVQV-----------GEEQLDIVAN 331 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 + + G +E V+ D Sbjct: 332 SHVFDGEGFAEFYIVNN----------------------------------------DGV 351 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 + N +L ++++D+I + L+++ +G G DDIDHLGNRR+R VGE Sbjct: 352 ESKVICNNCNL----PYDHRTVTREDMIANISYLLNLMDGAGHTDDIDHLGNRRLRCVGE 407 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQFR+GL R+ER V+ER+++ + +++ PQ +IN +P+ AA+KEFFGSSQLSQFMDQ Sbjct: 408 LLQNQFRIGLTRMERVVRERMTIQETESITPQALINIRPVVAAIKEFFGSSQLSQFMDQT 467 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSLS Y Sbjct: 468 NPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSNY 527 Query: 579 AQTNEYGFLETPYRKV-------------TDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 A+ NE+GF+E PYRKV V+D + Y++A EE IAQANS LD Sbjct: 528 AKVNEFGFIEAPYRKVEKVYGKGKDADKVVKVRVSDSVVYMTADEEEGMTIAQANSPLDA 587 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 EG+F + V CR + + D+VDYMDVS ++VVS+G ++IPFLE+DDANRALMGANM Sbjct: 588 EGYFTTEHVACRRGHDVLEVTPDKVDYMDVSPKEVVSIGTAMIPFLENDDANRALMGANM 647 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 QRQAVP LRA PLVGTGME A DSGV +A+ G V + I + + + Sbjct: 648 QRQAVPLLRAQAPLVGTGMEYTAATDSGVCVLAREAGKVVRCWGNEIHVLRD------SD 701 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 +D Y L K+ RSNQ+TC NQ P V+ G+ V +G VLADGP+TD GELALG N+ VAFM Sbjct: 702 GRVDTYRLNKFLRSNQSTCFNQKPIVNRGDHVVKGQVLADGPATDGGELALGYNVLVAFM 761 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PW GYN+ED+IL+SE + +ED +T+IHI+E C +RDTKLG EEIT ++PN G+ L L Sbjct: 762 PWEGYNYEDAILLSEELCKEDIYTSIHIEEYECDARDTKLGAEEITRELPNTGDDTLKNL 821 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE GI+ IGAEV GDILVGK TPKGET+LTPEE+LLRAIFG+K +V+D+SLRVP+G S Sbjct: 822 DEDGIICIGAEVHPGDILVGKATPKGETELTPEERLLRAIFGDKEREVRDTSLRVPHGES 881 Query: 926 GTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G V+DV+VFTR +G E ++ + + Q +K + G + V+ + Sbjct: 882 GKVVDVKVFTRENGDELQPGVNKLVRVYIAQKRKIHEGDKMAGRHGNKGVVSRVMRKEDM 941 Query: 985 EAEKLDKLPRDRWLE------------------------LGLTDEEKQNQLEQLAEQYDE 1020 D P L LG+ + ++ + ++ Sbjct: 942 PF-LPDGTPVQIVLNPLGVPSRMNIGQVLETHLGWAVQGLGMKIKATDLHIQNVLKE-AR 999 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 + ++++A R Q + L V + V V + K +KI Sbjct: 1000 TDASYWEQIDAIRDLYAQIEALEAKVSEDVTVNHFEENEQIITLK-----------TKIL 1048 Query: 1081 PIED--MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 + + + L +E D + Sbjct: 1049 KHVEKAAQKKLDAMGGEARFQELKAIEAKYNALHVEFFDSEEEAPEMDPALVEELEAISK 1108 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 K + + +K S D + + + G+ IATPVFDGA E ++ E Sbjct: 1109 VKNTLNNIHSAEEKRVEIRKELESLGYDFDKYGMPKPDVAGIHIATPVFDGAHEKDVFET 1168 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L + P G+ LYDGRTGE + VTVGY+YMLKL+HLVDDK+HARSTG YSLVTQQP Sbjct: 1169 LAIAGRPDDGKTVLYDGRTGEPMDNRVTVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQP 1228 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV G + EPG Sbjct: 1229 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKAYEKIVKGENIPEPG 1288 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +PESF VLLKE++S+G+++++ +E Sbjct: 1289 VPESFKVLLKELQSIGLDVKILNE 1312 >UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC1_9BACT Length = 1258 Score = 1084 bits (2802), Expect = 0.0, Method: Composition-based stats. Identities = 571/1367 (41%), Positives = 808/1367 (59%), Gaps = 153/1367 (11%) Query: 13 KDFGKRPQVL--------DVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQ 60 K + + ++P LL++Q+DSF F+++D Q GL+A F ++FP++ Sbjct: 5 KSYSRISGRFAELGIPEVEIPNLLAMQVDSFNDFLQKDIHPQRREKKGLQAVFENIFPLE 64 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 GN L+++ Y + + + ++EC+ R ++Y APL+ K+RL ++E KD EQ Sbjct: 65 DTKGNFLLEFIEYNVLQEKYSLEECRERNLSYQAPLKAKMRLSVFENREGVREHKDTLEQ 124 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV++GEIPL+T+ GTFVING ERVI+SQL RSPGVFF +K H SGK LY+A++IPY Sbjct: 125 EVFLGEIPLITEQGTFVINGAERVIISQLQRSPGVFFSEEK---HPSGKTLYSAKVIPYS 181 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQM 239 GSWLDF+ D D +FV ID+RRKLP T + RA+ + E + F++ +++ K Sbjct: 182 GSWLDFDIDIHDVMFVHIDKRRKLPVTTLFRAIGISTNEDLRKTFYKSEKLNLKEAK--- 238 Query: 240 ELVPERLRGETASFDIEANGK--VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 G DI G +IT I+ L + Sbjct: 239 --------GRHLFADIYEKGNPEPIAMANEQITDSLIKFLSERK---------------- 274 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 ++E + N + T+ DPT Sbjct: 275 --------------------------------ITKVEVIDYNYEIARKVLENTMAKDPTT 302 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 ++ AL +IY ++RPGE EAA+ L + +FF+E RY+L VGR K N L Sbjct: 303 NQEEALKKIYNLIRPGEDAPLEAAKQLVDRMFFNEKRYNLGEVGRYKINSRLGINVDPKI 362 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 L+ +D + + K LI+I + + EVDDID+L NRR+R+VGE+ + Q+ +G+ V R ++E Sbjct: 363 MTLTVEDFVYIFKTLINIYHDEDEVDDIDNLANRRVRTVGELLQEQYTIGMAMVARIIQE 422 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 R+++ ++D + D++N+ + + V+ FF + QLSQFM+Q NPL+ + HKR +SALGPGG Sbjct: 423 RMAISNIDEVTVHDLVNSNALISVVQSFFLTGQLSQFMEQTNPLAALRHKRALSALGPGG 482 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI S ++Y++ N +GFLETPYRKV DG Sbjct: 483 LARERAGFEVRDVHSSHYGRICPIETPEGPNIGLIVSPAIYSRINHFGFLETPYRKVVDG 542 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 +TDE YL A +E Y+IAQ++ +LD+ ++++ R +GE S + V YMDV+ Sbjct: 543 CITDEYEYLDASQEEKYIIAQSDVHLDDNRRITDEMIFARDRGEFVQVSPNLVHYMDVAP 602 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 QQ+VSV A+LIPFLEHDDANRALMG+NMQRQAVP + PLVGTGME+ ++D+ AV Sbjct: 603 QQMVSVSAALIPFLEHDDANRALMGSNMQRQAVPLINPQAPLVGTGMEKIASMDTSSIAV 662 Query: 718 AKRGGVVQYVDASRIVIKV-NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 A G+V V ++ I +K NE + + + +L K+ R+NQ+TCINQ P V +G+ Sbjct: 663 APYDGIVTKVTSAFIDLKPLNEKDEAYYLSTGNRIHLKKFVRTNQDTCINQRPIVRVGDT 722 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 V++G ++DG + LALG N+ VAFMPW GYN+ED++++SE+V +ED T+I+I+EL Sbjct: 723 VKKGQPISDGACVEDNRLALGTNLMVAFMPWYGYNYEDAVILSEKVAREDTLTSIYIEEL 782 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG-ETQL 895 + R+ K G EE+ DIPNV AL LD++GI+ +G+ + GDI+VGKVTPK E Sbjct: 783 EVLVRNVKNGREELAYDIPNVPAQALRNLDKTGIIRVGSVIHAGDIIVGKVTPKSVEIDP 842 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD------------- 942 +PEE L+RA+FG++A D +SSL+ G+ G VIDV+VF+R D Sbjct: 843 SPEENLMRALFGDRAGDFTNSSLKAKPGMEGVVIDVKVFSRLEEGSDLEEENEDKIEKLK 902 Query: 943 ----KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW- 997 R +IEE + ++ L ++ + I + + + L ++ + Sbjct: 903 EELALRRSKIEEFKEEKLSAVLVGQIAKNIWDEKTNIPFIAPGKKITKQDLKRINFKKLD 962 Query: 998 --LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 +EL E Q+ + + + + + R +I GD+L GV K+VKVY+A Sbjct: 963 LDVELVEDREVNDYIYSQIVLKIKQSLEQSDNIYKKSRERIKHGDELQYGVRKMVKVYVA 1022 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 KR+I+ GDKMAGRHGNKGVIS I PIEDMP+ E+GTPVDIVLNPLGVPSRMNIGQI+ET Sbjct: 1023 KKRKIEVGDKMAGRHGNKGVISIIAPIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQIMET 1082 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 HLG AAK +G ++ + + +++A Sbjct: 1083 HLGWAAKTLGFEVETPIFDGASNEDIVSELRKAGLP------------------------ 1118 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + K +L G+ +GE F+ VTVG +YM+KL Sbjct: 1119 -----------------EDGKTVL------YDGK-------SGEPFKERVTVGIIYMMKL 1148 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 NHLV DKMHARSTG YSL+TQQPLGGKAQ GGQR GEMEVWALEAYGAA L+EMLT+KS Sbjct: 1149 NHLVADKMHARSTGPYSLITQQPLGGKAQHGGQRLGEMEVWALEAYGAASVLEEMLTIKS 1208 Query: 1296 DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 DDV+GR +K I G++ PG+PESFNVL+ E++SLG +IE E Sbjct: 1209 DDVDGRNNAFKAITRGDNPPPPGVPESFNVLISELKSLGFDIEFIKE 1255 >UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax=Planctomycetales RepID=RPOB_RHOBA Length = 1240 Score = 1069 bits (2763), Expect = 0.0, Method: Composition-based stats. Identities = 565/1357 (41%), Positives = 786/1357 (57%), Gaps = 153/1357 (11%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSY 62 E IRK FG D+P L ++Q S+ F+++D +GLE+ R +FPI SY Sbjct: 10 EPTSIRK-FGTGLGQFDLPDLTALQTVSYAAFLQEDAASNARKDHGLESVLREIFPIASY 68 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 GN+ L+Y+ Y LG+P + +QEC+ +TY PLR+ LRL ++ E+EV Sbjct: 69 DGNTTLEYLYYELGKPRYTIQECRQLRLTYGRPLRIWLRL----------NREEPIEEEV 118 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 Y+G++P+M G F+ING ERV+VSQLHRSPGV F ++ T + + L + R+IP RGS Sbjct: 119 YLGDLPIMLGGGEFIINGAERVVVSQLHRSPGVDFVLEQDTT--TDRKLPSCRVIPERGS 176 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALN---YTTEQILDLFFEKVIFEIRDNKLQM 239 W++ KD L VRID+ K AT++LRA++ T +L F+E ++ K Sbjct: 177 WIEVNVTKKDALTVRIDQSGKFAATMLLRAMDPKYSTDADLLSAFYETGTIKVNGGK--- 233 Query: 240 ELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 K + K+ V Y +G Sbjct: 234 ------------------------------------DATKIENKIAVDDVVYPSGH---- 253 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 E GE+I A +++ +L + +G +E + DL P I TL D T Sbjct: 254 ----ERAGEIIVEAGYKITTELSETICNAGVTSVEAM---DLPKVPLIFNTLADDNTASH 306 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL+ IY+ +RPG PP E A +LF+ F+ ++RY L VGR + NR L E Sbjct: 307 EEALLRIYQRLRPGNPPQLEKARTLFQEKFYDDNRYRLGKVGRFRLNRKLGLGVEETVMT 366 Query: 420 LSKDDIIDVMKKLIDIRNGKG--EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 L DD+I ++ LID+ + E+DDIDHLGNRR+R++ E+A + R G +++ R V+E Sbjct: 367 LRPDDMIAAIRYLIDLFDADSGAEIDDIDHLGNRRLRTIDELASEELRKGFLKLRRTVQE 426 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 R+S+ D + P+ +IN K +SAA+ FFG +LSQ +DQ NPLS++ H+RR+SALGPGG Sbjct: 427 RMSVKDAQDMTPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLSQLAHERRLSALGPGG 486 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L R+RAGFEVRDVH +HYGR+CPIETPEG NIGLI+SL++YA ++YGFL TP+RKV DG Sbjct: 487 LNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDDYGFLCTPFRKVIDG 546 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 ++DE +L A EEG +A A++ + + + R + + + +QV +MDV+ Sbjct: 547 KISDETVWLRADEEGESYVAPADTEVKDGALVPGPNMIARFRSDFEIVMPEQVSFMDVAP 606 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 Q+V V A LIPFLEHDDANRALMG+NMQRQAVP L + P+VGTGMER VA +S + Sbjct: 607 AQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGMEREVAKNSAMVVR 666 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A+R G V Y DA+RI E G D Y L KY N+ TC NQ P +++G+ V Sbjct: 667 ARRAGKVTYADATRI------------EIGSDHYPLKKYQGLNERTCQNQKPLITVGDKV 714 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 E+G ++ADG +T GELALG+N+ V FM ++G+N+ED+I++SE +V+ D +T+IHI++ Sbjct: 715 EKGQIIADGAATQKGELALGRNVLVGFMSFDGFNYEDAIIISEELVRNDTYTSIHIEDFD 774 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 R+TKLG EE T DIPNV E AL LD++GIV G V GDILVGKV+PK +T+LTP Sbjct: 775 VEIRETKLGREEFTRDIPNVSEKALRNLDDTGIVQTGTYVKPGDILVGKVSPKSKTELTP 834 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 EEKLL AIFG DVK+ SL VP+G+ G VID Q F+R + E + Sbjct: 835 EEKLLHAIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLGEDERKAFERELKQHET 894 Query: 958 K-------DLSEELQILEAGLFSRIRA-------VLVAGGVEAEKLDKLPRDRWLELGLT 1003 + ++ +E +++ AE+ + LE Sbjct: 895 EGNEEIASTFESLIRDMEEASGVKLKDSTGTPLADGQDPKFVAERATSFRLELVLEQIED 954 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 +E+++ + Q+ ++ +++ + K + +GD+L GVL++VK+Y+A KR I G Sbjct: 955 EEKRKAAEKVHQTQWQNVEQAIDER-DRKLNSMKRGDELRSGVLQMVKIYIATKRTISVG 1013 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DKMAGRHGNKGVI+KI PIEDMP+ +GTP+ I+LNPLGVPSRMN+GQILETHLG A Sbjct: 1014 DKMAGRHGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETHLGWAGAK 1073 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 +G + + +++ + + A + D T E Sbjct: 1074 LGFQALTPIFDGASESEINDCLAEAGLPAHGKIRLTDGRTGEPMEQETTVG--------- 1124 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 + MLKL+HLVDDK+ Sbjct: 1125 ----------------------------------------YIY-----MLKLHHLVDDKV 1139 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 HARSTG YSL+TQQPLGGKA+FGGQRFGEMEVWALEAYGAAY LQE+LTVKSDDV GRTK Sbjct: 1140 HARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTK 1199 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +Y+++V G + +E G P SF+VL EIR L +N++LE Sbjct: 1200 IYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLE 1236 >UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria RepID=C1A6N7_GEMAT Length = 1522 Score = 1048 bits (2710), Expect = 0.0, Method: Composition-based stats. Identities = 547/1214 (45%), Positives = 757/1214 (62%), Gaps = 76/1214 (6%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYSGNSELQ 69 F K +D+P+LL IQ +F+ ++ D GLE F+ +FPI N L+ Sbjct: 5 SFAKLETGMDMPHLLDIQTRAFESLLQLDAASQEREDVGLERVFKDLFPITDVHENFSLE 64 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 +V Y LGEP + V EC R +TYSAPL+ L+LVI+E ++I E+EVY+GE+PL Sbjct: 65 FVRYSLGEPKYTVAECIERDMTYSAPLKATLQLVIFEDTGDGKRPRNIIEKEVYLGELPL 124 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 +T+ GTFVING ERVIVSQLHRSPGV F+ TH +G+ L ++RIIP+RGSW++F D Sbjct: 125 LTELGTFVINGAERVIVSQLHRSPGVVFEE---STHPNGQRLLSSRIIPFRGSWVEFTVD 181 Query: 190 PKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 D ++V ID+++K PAT +LRA Y IL LFF + ++ K + + G Sbjct: 182 IHDVIYVHIDKKKKFPATALLRAFGYGENRDILRLFFAERDLDLTK-KRETRNDQREVLG 240 Query: 249 ETASFDIEANGKV------------------------YVEKGRRITARHIRQLEKDDVKL 284 + DI G+V V +G +T + +L + +K Sbjct: 241 AIIAEDITLEGEVTAADAPKPKTKKAKAERERSEAELLVREGDELTEEVLNRLVRQGIKT 300 Query: 285 IEVPVEY-----------------IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 +++ Y +++A+D ID+ TGE++ + L+ ++ ++ + Sbjct: 301 VKMFASYTQIDLRDEQDAIDRGEREVRRMLARDVIDQDTGEVVAEKDTTLTDAVIKRIRK 360 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 + ++ + I TL DPT AL +IY ++RPG+ P RE A+ E Sbjct: 361 ADIVKVFVFVASGRAESTLIKNTLAKDPTKAEEEALKQIYALLRPGDAPNRETAKQALER 420 Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 LFFS RYDL VGR K N+ L + +L+K+D +++M++L+++ G+G+VDDID Sbjct: 421 LFFSPKRYDLGRVGRYKINQRLRLNTPMRTTVLTKEDFVEIMRQLVELHEGRGDVDDIDQ 480 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-DLDTLMPQDMINAKPISAAVKEFF 506 LGNRRIRSVGE+ NQF VGL R+ R VKER+S+ D + + D++NA+ +SA ++ FF Sbjct: 481 LGNRRIRSVGELIANQFSVGLSRMARLVKERMSINTDPEKISLDDLVNARTVSAVIQAFF 540 Query: 507 GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 566 GSSQLSQFMDQ NPL+E+THKRR+SALGPGGLTRERAGFEVRDVH + YGR+CPIETPEG Sbjct: 541 GSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSQYGRMCPIETPEG 600 Query: 567 PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE 626 PNIGLI SL+ +AQ N+ GF+ETPYR V +G VT EI +L A E + +IAQANS L+ + Sbjct: 601 PNIGLITSLACFAQVNDLGFIETPYRIVKEGRVTGEIVWLDANREEDAIIAQANSKLNPD 660 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 G FV+DLV R +G+ L +DYMDV+ +Q+VS+ A+LIPFLEHDDANRALMG+NMQ Sbjct: 661 GTFVDDLVLSRKRGDLPLEPPMNIDYMDVAPEQLVSIAAALIPFLEHDDANRALMGSNMQ 720 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV-------IKVNED 739 RQAVP L P VGTG+E VAVDSG +A+R GVV V A I+ V++ Sbjct: 721 RQAVPLLNPATPFVGTGLEATVAVDSGAVIIARRPGVVTNVTADEIIIDAGLNQEAVDDG 780 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 +D Y L KY R+NQ+T INQ P V +G+ V +G+VLADG +T++G+LALG+N Sbjct: 781 RPLTRLGQLDRYRLKKYWRTNQDTAINQRPLVRMGQTVAKGEVLADGAATEMGQLALGRN 840 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + VAFMPW G+NFED+I++SER+V+ D F++IHIQEL RDTK G EEIT +IPNV E Sbjct: 841 VTVAFMPWYGHNFEDAIVLSERLVKFDVFSSIHIQELELHVRDTKRGQEEITREIPNVAE 900 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 +L LDE GIV IGA V GDILVGK+TPKGET+L+PEEKLL AIFGEKA DVKDSSL+ Sbjct: 901 ESLVDLDERGIVRIGAAVKAGDILVGKITPKGETELSPEEKLLTAIFGEKAKDVKDSSLK 960 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI---- 975 V G+ G VIDV++F+R + ++ ++++ + + + + SR+ Sbjct: 961 VSPGMEGVVIDVKIFSRVEDQVVEKDRGERIGEVRRLEGEEKIRVNEVRDAELSRLLEGE 1020 Query: 976 ------------RAVLVAGGVEAEKLDKLPRD--RWLELGLTDEEKQNQLEQLAEQYDEL 1021 A+ + E LD L + +++ +++ + + E Sbjct: 1021 TVALALKAGTVEEAIGAGTTLTREILDGLRFATLDLKTFRVENKKANDRVRDILDAAAEE 1080 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 K E++ E + +I Q D+L PGV+++VKVYLA KR+I GDKMAGRHGNKG++++I P Sbjct: 1081 KARIEERAEDRIDRILQPDELPPGVIQLVKVYLAEKRKISVGDKMAGRHGNKGIVARIVP 1140 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 EDMP+ NG PVDIVLNPLGVPSRMN+GQILETHLG AAK + + + ++ Sbjct: 1141 EEDMPFLPNGRPVDIVLNPLGVPSRMNVGQILETHLGWAAKLLNFYAKTPVFEGANEREI 1200 Query: 1142 REFIQRAYDLGADV 1155 ++ A A Sbjct: 1201 GLLMKLAGLRWARE 1214 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 105/152 (69%), Positives = 127/152 (83%) Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 D +A EL++L L +G++RL DGRTGE F PVTVG +YMLKL+HLVDDK+HARS Sbjct: 1347 DADVDAAASELIRLAGLTPTGKVRLRDGRTGETFTAPVTVGEIYMLKLSHLVDDKIHARS 1406 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 G YSLVTQQPL GKAQFGGQRFGEMEVWALEAYGAA+TLQE+LTVKSDDVNGR+++Y+ Sbjct: 1407 IGPYSLVTQQPLAGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVNGRSRVYEA 1466 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 IV G + EPG+PESFNVL+KE+++LGI + L Sbjct: 1467 IVKGQNLPEPGIPESFNVLVKELQALGIKVTL 1498 >UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 Tax=cellular organisms RepID=RPOB_PELPD Length = 1499 Score = 1045 bits (2703), Expect = 0.0, Method: Composition-based stats. Identities = 597/1161 (51%), Positives = 793/1161 (68%), Gaps = 39/1161 (3%) Query: 210 LRALNYTTEQILDLFFEKVIFEIR--DNKLQMELVPERLRGETAS--FDIEANGKVYVEK 265 R L I F + ++ + +++ +E+ G+ + + ++ Sbjct: 341 FRLLFIDNLHITSSFRDTLLMDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNP 400 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYI---AGKVVAKDYID-ESTGELICAANMELSLDL 321 R + R + L P + A+D + L+ AA+ S + Sbjct: 401 ERYDLSAVGRLKLNFKLGLKVWPECTVLNAPCMFGAEDIASFDELFRLLLAADNRFSQYV 460 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 LA+L + K + + E L + N + + G +++ Sbjct: 461 LARLPEDFVK-VLRKHEPSQPVAEKLREQLLKELNNLVKDPDFY-QKELFTGLALSQQTV 518 Query: 382 --ESLFENLFFSEDRYDLSAVGRMK-FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 E F E+R + + R + L + S K+DI+++++ LID++NG Sbjct: 519 ALTEAIEGGVFEENRRVIEVLRRNRMIFEDLYAPVVLTSP---KNDILEIVRYLIDLKNG 575 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPI 498 +G +DDIDHLGNRR+R+VGE+ ENQ+R+GLVR+ERA+KER+SL +++ LMP D+IN+KP+ Sbjct: 576 RGAIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQEVENLMPHDLINSKPV 635 Query: 499 SAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 SA VKEFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRV Sbjct: 636 SAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRV 695 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 CPIETPEGPNIGLI SLS YA+ N++GF+ETPYR V DG +T+E+ + SA+EE + IAQ Sbjct: 696 CPIETPEGPNIGLIASLSTYARINDHGFVETPYRIVLDGKLTNEVRFFSALEEEGHAIAQ 755 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 AN+ +D EG FV D V+ R GE L RD+++ MDV+ +Q+VSV A+LIPFLE+DDANR Sbjct: 756 ANAEVDAEGRFVNDYVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLENDDANR 815 Query: 679 ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 ALMG+NMQRQAVP LRAD PLVGTGMER VA DSGV+ +A+ GVV+ VDASRIV+K++E Sbjct: 816 ALMGSNMQRQAVPLLRADSPLVGTGMERIVAKDSGVSVIARHNGVVESVDASRIVVKIDE 875 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 E+ G+DIYNL K+ RSNQNTCIN P V +G+ V+R DV+ADGPSTD+GELALGQ Sbjct: 876 SEVDETGTGVDIYNLIKFARSNQNTCINNKPVVKVGDVVKRHDVIADGPSTDMGELALGQ 935 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG 858 N+ VAFMPW GYNFEDSILVSE++V++DR+T+IHI+E CV+RDTKLG EEIT+DIPN+G Sbjct: 936 NIVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEYECVARDTKLGKEEITSDIPNLG 995 Query: 859 EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSL 918 E AL LDESGI+ IGAEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+D+SL Sbjct: 996 EEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDTSL 1055 Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 VP GV GTVI +VF+R G +KD R IE+ + ++ +KD +E++I+ ++ + Sbjct: 1056 TVPPGVEGTVIGAKVFSRKGADKDTRTELIEKAEEEKLRKDEQDEIRIIRQSAEGKLHRL 1115 Query: 979 LVAGGVEAEKLDKLPRDRWLE--------------------LGLTDEEKQNQLEQLAEQY 1018 L+ + + D + D + + + ++ + Sbjct: 1116 LIGKSLSVKLEDGEGNLILAKGKEITAEALKSLSINDMGAISVSDDGQTDDNVSKVIDTL 1175 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 + + E K +K+ +GDDL PGV+K+VKVY+A+KR++Q GDKMAGRHGNKGV+S+ Sbjct: 1176 NRQIELIQSVFEDKIQKLRRGDDLPPGVIKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSR 1235 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I P EDMPY E+G PV+IVLNPLGVPSRMN+GQILETHLG AAKGIG +I ML++Q Sbjct: 1236 ILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAAKGIGWRIEEMLQKQTSA 1295 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 L+ +++ Y D + EE+M + L++G+ +A+PVF+GA E +IK + Sbjct: 1296 ESLKAYLKDVY---GDDEVGTFIDGMDQEELMLVCRRLQRGVSMASPVFEGASEDKIKSM 1352 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L +SGQ+ L+DGR+G+ F+ VTVG MY+LKL+HLVDDK+HARS G YSLVTQQP Sbjct: 1353 LGKAGFHSSGQVTLFDGRSGDPFKHKVTVGVMYVLKLHHLVDDKIHARSIGPYSLVTQQP 1412 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGKAQFGGQR GEMEVWA+EAYGAAY LQE LTVKSDDV+GRT+MY+ IV G H +EPG Sbjct: 1413 LGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVSGRTRMYEAIVKGKHTLEPG 1472 Query: 1319 MPESFNVLLKEIRSLGINIEL 1339 +PESFNVL+KE++SL +++EL Sbjct: 1473 LPESFNVLIKELQSLCLDVEL 1493 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 288/1163 (24%), Positives = 491/1163 (42%), Gaps = 153/1163 (13%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 M YS +RK F K ++D+P L+ IQ +S+++F++Q+ GLEA FRSV Sbjct: 1 MAYSIANNHLLRKTFTKIKNIIDIPNLIDIQKNSYRRFLQQEGVSESRNNTGLEAVFRSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTV 114 FPI+ +S ++ L+YVSY L +P +DV EC RG+T++AP++VK+RLVI++ +E+ + Sbjct: 61 FPIKDFSESASLEYVSYSLSKPKYDVVECHQRGMTFAAPMKVKVRLVIWDTGKESGIRAI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 KDIKEQEVY GEIPLMTDNGTF+INGTERVIVSQLHRSPGVF+D DKGKTHSSGKVLY+A Sbjct: 121 KDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLDFEFD KD L+VRIDRRRK+PAT++L+AL Y+ EQ+L+ +++ + Sbjct: 181 RVIPYRGSWLDFEFDHKDILYVRIDRRRKMPATVLLKALGYSAEQLLNYYYKSEEIFLTG 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + E L + A D+ +G+V V+ R+ T IR++ + D+K + + + I Sbjct: 241 ETPSKSIDAELLTLQKALVDVVDPKSGEVIVKANRKFTKASIRKMVEHDIKAVPITFDSI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ + D ID +TGE++ N E++ + ++ G + LF ++L +TL Sbjct: 301 IGRYASSDVIDPATGEVLLECNEEVTAEKFDEIKAKGVESFRLLFIDNLHITSSFRDTLL 360 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 +D + AL+EIYR +RPG+PPT +++ +LFENLFF+ +RYDLSAVGR+K N L + Sbjct: 361 MDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNPERYDLSAVGRLKLNFKLGLK 420 Query: 413 EIEGSGILSK-----------------------------------DDIIDVMKK------ 431 +L+ +D + V++K Sbjct: 421 VWPECTVLNAPCMFGAEDIASFDELFRLLLAADNRFSQYVLARLPEDFVKVLRKHEPSQP 480 Query: 432 --------LIDIRNGKGEVDDIDHLGNRRIRSVGEM------AENQFRVGLVRVERAVKE 477 L+ N + D D + + + + G+ R V E Sbjct: 481 VAEKLREQLLKELNNLVK--DPDFYQ-KELFTGLALSQQTVALTEAIEGGVFEENRRVIE 537 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM----DQNNPLSEITHK--RRIS 531 L ++ +D+ +++ + ++ +++ + + +I H RR+ Sbjct: 538 VLRRNR---MIFEDLYAPVVLTSPKNDIL---EIVRYLIDLKNGRGAIDDIDHLGNRRVR 591 Query: 532 ALG-------PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 A+G GL R + R ++ + +L + N Sbjct: 592 AVGELLENQYRIGLVRMERAIKERM------------------SLQEVENLMPHDLINSK 633 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYV-----IAQANSNLDEEGHFVEDLVTCRSK 639 ++ + + + E + + + G V D+ Sbjct: 634 PVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYG 693 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP---TLRAD 696 + + + + +++ S A + + R ++ + + Sbjct: 694 RVCPIETPEGPNIGLIASL---STYARINDHGFVETPYRIVLDGKLTNEVRFFSALEEEG 750 Query: 697 KPLVGTGMERAVA-VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 + E A++ G V I + + A I L Sbjct: 751 HAIAQANAEVDAEGRFVNDYVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLEN 810 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED- 814 +N+ + M P+ + AD P G VA +D Sbjct: 811 -DDANRALMGSNM--QRQAVPL----LRADSPLVG-----TGMERIVA---------KDS 849 Query: 815 --SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 S++ V E + + ++ D +I I + ++ +V Sbjct: 850 GVSVIARHNGVVESVDASRIVVKIDESEVDETGTGVDIYNLIKFARSNQNTCINNKPVVK 909 Query: 873 IGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDS---SLRVPNGVSGTV 928 +G V D++ G T GE L + ++ A + +DS S ++ T Sbjct: 910 VGDVVKRHDVIADGPSTDMGELAL--GQNIVVAFMPWGGYNFEDSILVSEKLVKDDRYTS 967 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS--EELQILEAGLFSRIRAVLVAGGVEA 986 I ++ + + EI ++ L +E I+ G + +LV Sbjct: 968 IHIEEYECVARDTKLGKEEITSDIPNLGEEALKDLDESGIIRIGAEVKPGDILVGKITPK 1027 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + P ++ L ++ + L K+ +++ Sbjct: 1028 GETQLSPEEKLLRAIFGEKAGDVRDTSLTVPPGVEGTVIGAKVFSRKGADKDTRTELIEK 1087 Query: 1047 LKIVKVY------LAVKRRIQPG 1063 + K+ + + R+ G Sbjct: 1088 AEEEKLRKDEQDEIRIIRQSAEG 1110 >UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria RepID=C6HVV1_9BACT Length = 1729 Score = 973 bits (2516), Expect = 0.0, Method: Composition-based stats. Identities = 539/1120 (48%), Positives = 725/1120 (64%), Gaps = 90/1120 (8%) Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE------YIAGKVVAKDYI 302 ET S E V V ++ +++D +I + E + V + Sbjct: 662 ETLSQISEHKKLVLVRSKHEDLRVLVQSSQENDGNIITLTTEKPVTMQDLQSYVHMFELE 721 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS- 361 + G + L +S + +++ + E L + R+ Sbjct: 722 EPKKGNPYKKEGELFEFEDLDVAKKSKKNNVSLVYSATNKSHDLLLELLDLAKNPHRIES 781 Query: 362 --ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+VEIY+ +RPGE P E A F+ FF+ RYDLS+VGR+K N L E + + Sbjct: 782 DPAVVEIYKKIRPGEVPHVETARQFFDQSFFNSKRYDLSSVGRLKLNSKLGIRESLSNRL 841 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+K DI++V++ ++D+ KGE+DDIDHLGNRR+RSVGE+ ENQFR+GLVR+ERA+KERL Sbjct: 842 LTKSDIVEVIRYMVDLLENKGEIDDIDHLGNRRVRSVGELLENQFRIGLVRMERAIKERL 901 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 +LGD ++++ D IN KP++A +KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGLT Sbjct: 902 NLGDPESVISSDPINVKPVTAIIKEFFGSSQLSQFMDQTNPLAEVTHKRRLSALGPGGLT 961 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N++GF+E+P R V +G+ Sbjct: 962 RERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLATFARVNDFGFIESPVRVVENGIA 1021 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 EI YLSA++ Y+IAQA++ LD+ G E V+ R KG+ S DQV Y+DV+ QQ Sbjct: 1022 KPEIVYLSAMDGDKYIIAQASTKLDQNGALTEPQVSARFKGDFISVSPDQVQYIDVAPQQ 1081 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VSV +LIPFLEH+DANRALMG+NMQRQAVP LR PLVGTGME+ VA DSG A Sbjct: 1082 IVSVATALIPFLEHNDANRALMGSNMQRQAVPLLRPSAPLVGTGMEKVVARDSGYVIYAT 1141 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 G V +D + +K G+ Y L K+ RSNQNTC+NQ +S ++ Sbjct: 1142 EDGEVVKIDGTSFTVKY-------KNTGLKTYPLIKFRRSNQNTCLNQKVLLSPRTKFKK 1194 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 GDVL DGPST+ G+LA+GQN+ VAFMPW GYNFED+IL+SER+V++D FT+IHI+E Sbjct: 1195 GDVLVDGPSTERGDLAMGQNVLVAFMPWGGYNFEDAILISERLVRDDMFTSIHIEEFELE 1254 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 +R+TK G EEIT DIPN+ + AL LDE GIV IGAEV GDILVGKVTPK ETQLTPEE Sbjct: 1255 ARETKQGKEEITRDIPNLSDEALKNLDEGGIVRIGAEVKPGDILVGKVTPKAETQLTPEE 1314 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM--QLKQAK 957 +LLRAIFG+K+++ KD+SL VP G+ G V+DV++ +R G+EK++ + + Sbjct: 1315 RLLRAIFGDKSANWKDASLTVPAGIEGIVVDVKILSRKGIEKEEAVMAAPMHGQDIGSLT 1374 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE------------------ 999 EL+ +E +I+A L+ ++ + LD D L+ Sbjct: 1375 HAYQGELRKVEEEKKEKIKAFLLGKVIKEDILDAETGDVILKKKRRLTTDTLEKLADYSA 1434 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + L+D+++Q++L+ + + E + + + + ++ +GD+LAPGVLK+VKVY+A+KR+ Sbjct: 1435 ITLSDQKEQDELQAIESRTKEKIEAIQMRHDERIGRLKKGDELAPGVLKLVKVYVAMKRK 1494 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 + GDKMAGRHGNKGV+S+I P+EDMP+ +GTPVDI+LNPLGVPSRMN+GQILETHLGM Sbjct: 1495 LSVGDKMAGRHGNKGVVSRIVPVEDMPFLPDGTPVDIILNPLGVPSRMNVGQILETHLGM 1554 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 AA+ +G + + +++ +++ + VD Sbjct: 1555 AARALGLHVATPVFDGATEEEIKAMLKKGGISETGQTRLVD------------------- 1595 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 G+ TGE FERPVTVG MYM KL+HLV Sbjct: 1596 ----------------------------GK-------TGEVFERPVTVGVMYMFKLHHLV 1620 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWAL+AYGAA TLQE LTVKSDDV+ Sbjct: 1621 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASTLQEFLTVKSDDVS 1680 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GR++MY+ IV G + ++PG+PESFNVL+KE++SL ++IEL Sbjct: 1681 GRSRMYEAIVRGENYLDPGLPESFNVLIKELQSLALDIEL 1720 Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 122/359 (33%), Positives = 195/359 (54%), Gaps = 22/359 (6%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNS 66 +R +FG Q +DV L+ IQ S+++F++ D GL++AF SVFPI+ Y+GN Sbjct: 8 VRHNFGGSQQFIDVQDLIEIQKRSYERFLQLDVPPSLREDSGLQSAFLSVFPIEDYNGNY 67 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV-----------K 115 + ++ Y LGEP ++ EC RG+TY+APL++K+R+ E+ K Sbjct: 68 RIDFIEYSLGEPKYEEYECLERGMTYAAPLKIKIRIAALEQNKEIDKTSPLSKEPSFSVK 127 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +KE+E Y+G++PLMT GTF+INGTERV+VSQLHRSPGVFF DK KT +G L+ +R Sbjct: 128 YMKEEEKYLGDLPLMTTKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRLTGTPLFTSR 187 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 IIPYRGSW+DFE+D KDNL+VRIDR++K PATI+L+A+ T+ ++ ++ +I+ Sbjct: 188 IIPYRGSWIDFEYDQKDNLYVRIDRKKKFPATILLKAMGMTSADVVKEYYNIETLQIKPG 247 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ++ G T F ++ + + +E ++ + + + Sbjct: 248 APELYAYFPIEPGSTLPFQLKDHDGLVFRDDSVP-------MESAEIMRVLKDRLDLTLR 300 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + + S + ++ + S L+ + G I L + D E+ + Sbjct: 301 FQGEGVDEVSIPNIRFFSDSKTSGILIPIVGGRGSAGIAPLLSKDASDLLSKLESKLSE 359 >UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Tax=Bacteria RepID=RPOB_SULMW Length = 1328 Score = 972 bits (2511), Expect = 0.0, Method: Composition-based stats. Identities = 522/1354 (38%), Positives = 778/1354 (57%), Gaps = 135/1354 (9%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFP 58 + +T++K I +F + P L IQ+ SF F + G F FP Sbjct: 12 FPFTKEKTI--NFASVRNKISYPDFLDIQIKSFTNFFCINYTYKNISNKGFYKVFIEYFP 69 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK--- 115 I + ++SY++ +P++ ++EC RG+TY+ +R + ++ + K Sbjct: 70 ISDSKNKFIIDFISYKIYDPLYSIEECIKRGLTYNVYIRARFKIYRTRKRKITIENKRTK 129 Query: 116 --DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 + Q+VY G P MT +G+F+ NG+ERVIVSQLHRSPGVFF + + Sbjct: 130 YFETIYQDVYFGTCPYMTPSGSFIFNGSERVIVSQLHRSPGVFFGQY---DIPNLPKISY 186 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEI 232 ARIIP +GSW++ D + +++ +D +++LP T +LRAL YT + IL++F I Sbjct: 187 ARIIPLKGSWIELSTDINNVMYIYLDIKKRLPITTLLRALGYTRDIDILNIFNLAEEVNI 246 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + ++ G T + I E+ + R+I+ Sbjct: 247 NK------VNYKKFLGRTLAARIFKTSYQKFEENDILLERNIK----------------- 283 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 + + L K+ + +L + I TL+ Sbjct: 284 -------------------LKKYHIDIILYYKIKVISLYKKNEKNEKNL-YYSIIHNTLK 323 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 DPTN + A + IY+ ++ P + A+ FF E L VGR K N++L + Sbjct: 324 KDPTNSQKEANIYIYKELKDSFPKNDKKAKLFINKFFFDE--THLGEVGRYKLNKTLKLD 381 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 IL+ +DII +++ LI + N K EVDDID+L NRR+++VGE Q+ +G+ RV Sbjct: 382 FPLKDQILNIEDIISIIENLIALCNNKKEVDDIDNLANRRVKTVGEQLYTQYTIGIARVS 441 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 R +KER+++ D +TL P ++IN+K +++ + FFG+ +LSQFMDQ NPL+E+THKRRIS+ Sbjct: 442 RIIKERINVKDNETLTPLELINSKTLTSVINSFFGTDELSQFMDQTNPLAEMTHKRRISS 501 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGL+RERAGFE+RDV+ +HYGR+CPIETPEGPNIGLI+SL V+A+ N GF+ETPY Sbjct: 502 LGPGGLSRERAGFEIRDVNYSHYGRLCPIETPEGPNIGLISSLCVFAKINSMGFIETPYF 561 Query: 593 KVTDGVVT--DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 KV G V + Y+S+ +E +I QAN+ L+ + +++ + R + + + ++ Sbjct: 562 KVKKGKVVINEAPIYISSDQEYGKLITQANAILNYKTGVLKNNIIVRVNADFPMVNYKKI 621 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +Y+DVST Q+ S+ ASLIPFLEHDDANRALMG+NM RQ+VP L P+VGTG+E+ +A Sbjct: 622 NYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGLEKHLAQ 681 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDE---MYPGEAGIDIYNLTKYTRSNQNTCINQ 767 A+ G+V+ VDA+ I +K E + E I Y L K+ ++NQNTC+N Sbjct: 682 YVNALIYAEGDGIVESVDANNIKVKYFNSEKEKLLSFEKRIKTYKLIKFRKTNQNTCLNI 741 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V G V +G VL +G +T G+LALG+N++VAFMP+ GYNFED+I++SE+VV+ED Sbjct: 742 RPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDAIVISEKVVREDW 801 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI E + RDTKLG EE T DIPN E KLD+ GI+ IG+EV GD+L+G++ Sbjct: 802 FTSIHIDEYSLEVRDTKLGMEEFTFDIPNFNEENKKKLDKYGIIKIGSEVKPGDVLIGRI 861 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 TPK E + EE L+AIFG+K +K++SL+ + + G VID +++++ ++D++ Sbjct: 862 TPKKEGYPSSEENFLKAIFGKKVGTIKNTSLKADSSLFGVVIDTKIYSKFSSKEDEQKQF 921 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP-------------- 993 + + K+L ++L L + + G + + + +P Sbjct: 922 QIKKLNNKFMKNLKLLRKLLINKLILVLEGSVSEGILNSSYKEIIPKGKILNKLNLKKLL 981 Query: 994 --RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 ++ + + ++ K N + ++ + Y +E + KL+ K+ ++ GD++ G++KI K Sbjct: 982 KNQEIIYQNWVNNKYKNNLVFKIIKFYYLKINELKIKLKRKKNRLLIGDEITSGIIKIAK 1041 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V +A KR+++ GDKM+GRHGNKG++++I EDMPY E+GT VD+VLNPLGVPSRMN Sbjct: 1042 VLIAKKRKLKVGDKMSGRHGNKGIVARIVKEEDMPYLEDGTSVDLVLNPLGVPSRMN--- 1098 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 +G +L Sbjct: 1099 ------------LGQIYETILGW------------------------------------- 1109 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + G+ +TP+FDGA EI + + +LP+ G L+DG TGE+F++PVTVG +Y Sbjct: 1110 --AGEKLGINFSTPIFDGASIEEISKYTDIANLPSFGNTYLFDGETGEKFDQPVTVGVIY 1167 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 MLKLNH+VDDKMHARS G YSL+TQQPLGGK++FGGQR GEMEVWALEA+GAA L+E+L Sbjct: 1168 MLKLNHMVDDKMHARSIGPYSLITQQPLGGKSKFGGQRLGEMEVWALEAFGAANILREIL 1227 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 TVKSDDV GRTK Y+ IV PG+PESF+V Sbjct: 1228 TVKSDDVKGRTKTYEAIVKRETIPNPGIPESFHV 1261 >UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Tax=Leptospira RepID=RPOB_LEPBP Length = 1228 Score = 952 bits (2461), Expect = 0.0, Method: Composition-based stats. Identities = 523/1358 (38%), Positives = 733/1358 (53%), Gaps = 193/1358 (14%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG-----QYGLEAAFRSVFPIQSYSG 64 R R +FGK + +P L+ +Q SF F++ + + GLEA FR FPI+S + Sbjct: 8 RNRVNFGKITDLNLLPNLIYVQKKSFDWFLQSEVKDPTKRLNQGLEAVFRESFPIESPNN 67 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 + ++Y Y LGEP D QEC+ +++ PL+ +RL+I + +I+EQ VYM Sbjct: 68 DMVMEYGHYVLGEPKRDPQECKDTDSSFAVPLKAVIRLIIKD-------TGEIREQVVYM 120 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G++P+MTD+GTF+ING ERV+VSQLHRSPG+FF D+ + ++AR+IPYRGSWL Sbjct: 121 GDLPVMTDHGTFIINGAERVVVSQLHRSPGIFFSYDQV------RDTFSARVIPYRGSWL 174 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVP 243 +FE D K L +IDR++K PAT++++A+ T E++L LF+ +I Sbjct: 175 EFEMDNKGILVAKIDRKKKFPATLLVKAMGMGTNEEVLRLFYGSSKMKI---AGANPKDL 231 Query: 244 ERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 +RL G DI G+V ++ G +I +I L + VK Sbjct: 232 KRLIGRRTIADIINMETGEVMLDAGSKINEDNISILREMKVK------------------ 273 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 ++ + P + L D ND Sbjct: 274 ------------------------------EVDVIEFPKGKDNPVLINCLEKDGVNDYED 303 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-----G 416 A+ + + +MRPGEP T E AE+ + LFFS +DL VGR K N + Sbjct: 304 AVKKFHTIMRPGEPSTIENAEAELKRLFFSPKTFDLGIVGRYKINSKFEFNNPKEFSKAD 363 Query: 417 SGILSKDDIIDVMKKL--IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 +L K DII+ ++ L + DDIDHLGNRRIRSVGE+ NQ ++G RVER Sbjct: 364 DRVLRKQDIIETVRYLVMLMSEAENYYPDDIDHLGNRRIRSVGELIANQLKLGFSRVERV 423 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 +KER+++ + + PQ +I+ KPI+A + EFFGSSQLSQFMDQ NPL+E+THKRR++ALG Sbjct: 424 IKERMTVQEPEQQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLNALG 483 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI S+S +A+ N+YGF+ETPYR V Sbjct: 484 PGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSFARVNDYGFIETPYRLV 543 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 +G V ++ YL+A +E + +AQ+NS +DE+G F L++ R +G+ S ++ YMD Sbjct: 544 KNGKVQKQVEYLTADKEEYHYMAQSNSTVDEKGEFTSKLISTRHRGDFPFRSPAEIQYMD 603 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 ++ QVVSV +LIPFLEHDDANRALMG+NMQRQAVP L + P VGTGME A D+GV Sbjct: 604 LAPLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLTEEAPFVGTGMEARAAYDAGV 663 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 VAK+ GVV VDA+ + IK ++ + I Y L K+ ++NQ TC NQ P VS+ Sbjct: 664 CIVAKKDGVVSKVDATGVWIKEDQSK------EIVHYPLIKFKKTNQGTCFNQKPNVSM- 716 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 +T G+++ RV NG +L+S E +F + + Sbjct: 717 -----------LHTTTGGKVSKVSKERVEVTTPNGEKETHELLLS----DEVQFHAVVKE 761 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 G GE G + G +L P + Sbjct: 762 GQEVGIGAPVAGQII-------KGEKYGDF---------GQILQKGTVLAN--GPSTDAG 803 Query: 895 LTPEE-KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 +L A + + +D+ L +S +I VF+ +E+ + ++ Sbjct: 804 YLALGRNVLVAFMPWEGYNFEDAIL-----ISERIIKDDVFSSIHIEEFEIQARETKLGQ 858 Query: 954 KQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 +Q +D+ +E ++ G + +LV + D P + L Sbjct: 859 EQITRDIPNLSDKAFRDLDESGVIRVGAEVKPGDILVGMVTPKGETDLTPEYKLLHSIFG 918 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 ++ K+ + L + KR GD+LA GV ++VKVY+A KR++ G Sbjct: 919 EKAKEVRDSSLRMPNGFEGTVID----IKRYSRETGDELAAGVEEMVKVYVARKRKLLVG 974 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DKMAGRHGNKGV++++ EDMPY E+G+PVDIVLNPLGVPSRMN+GQI ET LG AAK Sbjct: 975 DKMAGRHGNKGVVARVMAQEDMPYMEDGSPVDIVLNPLGVPSRMNLGQIFETQLGFAAKK 1034 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 +G + + +F ++A Q D R G Sbjct: 1035 LGINFETPVFDGASEGDVNDFCKKAGLPENSKFQLYDG---------------RTGEKFI 1079 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 VF GY+YMLKL HLVDDK+ Sbjct: 1080 NQVF---------------------------------------CGYIYMLKLAHLVDDKI 1100 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 HARSTG YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGA++TLQE+LT+KSDD+ GR + Sbjct: 1101 HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASHTLQELLTIKSDDMLGRAR 1160 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 +Y+ IV G H ++PG+PESFNVL++E+R L ++I ++D Sbjct: 1161 IYEAIVKGIHSIKPGIPESFNVLVQELRGLALDIIIKD 1198 >UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 Tax=Bacteria RepID=RPOB_BACP2 Length = 1196 Score = 881 bits (2276), Expect = 0.0, Method: Composition-based stats. Identities = 448/1007 (44%), Positives = 623/1007 (61%), Gaps = 73/1007 (7%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 13 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 66 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 67 LEFIDYSLGDPKYPVAESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 119 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F GK +GK + A +IP RG+WL++E Sbjct: 120 PIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGFTATVIPNRGAWLEYE 176 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKV--------IFEIRDNKLQ 238 D KD ++VRIDR RKLP T++LRAL ++++ +ILDL E +K Sbjct: 177 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEILDLIGENEYLRNTLEKDNTENADKAL 236 Query: 239 MELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 +E+ GE + + + + + R A R + + + Sbjct: 237 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKL----HIKNRLFNQK 292 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ +D TGE++ L +L K L++G + Sbjct: 293 LAETLVDPETGEILAEKGQILDRRVLDK------------VLPYLENGIGFRKLYPNGGV 340 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 + L I ++ P + G N E Sbjct: 341 VEDEVELQSI-KIYAPSDQ------------------------EGEQVINVIGNAYVEEA 375 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 ++ DII + ++ +G G+ DDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V+ Sbjct: 376 VKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVR 435 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPG Sbjct: 436 ERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPG 495 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GLTRERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS +A+ N +GF+ETPYR+V Sbjct: 496 GLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRVDP 555 Query: 597 --GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 G VT I YL+A EE NYV+AQAN+ L ++G F++D + R +GE+++ R++VDYMD Sbjct: 556 ETGKVTPRIDYLTADEEDNYVVAQANALLADDGSFIDDNIIARFRGENTVVPRNRVDYMD 615 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS +QVVS + IPFLE+DD+NRALMGANMQRQAVP ++ + P+VGTGME DSG Sbjct: 616 VSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPESPIVGTGMEYVSGKDSGA 675 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPG-EAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 + + GVV+ V+A I ++ ED + +D Y+L K+ RSNQ TC NQ P VS+ Sbjct: 676 AVICRYPGVVERVEAKNIWVRRYEDVDGQQVKGNLDKYSLLKFVRSNQGTCYNQRPIVSV 735 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V +G++LADGPS + GELALG+N+ V FM W+GYN+ED+I++SER+V++D +T+IHI Sbjct: 736 GDEVVKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHI 795 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +E +RDTKLGPEEIT DIPNVGE AL LDE GI+ IGAEV GD+LVGKVTPKG T Sbjct: 796 EEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDLLVGKVTPKGVT 855 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQ 952 +LT EE+LL AIFGEKA +V+D+SLRVP+G G + DV+VF R DG E ++ + Sbjct: 856 ELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDELPPGVNQLVRVY 915 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + Q +K + G I +L + D P D L Sbjct: 916 IVQKRKISEGDKMAGRHGNKGVISKILPEEDMPY-LPDGTPIDIMLN 961 Score = 502 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 304/1167 (26%), Positives = 477/1167 (40%), Gaps = 171/1167 (14%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K E++D + M P + +T +F I +V V + R + + + K Sbjct: 101 LINKETGEVKDQDVFMGDFP--IMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNGK 158 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 I + +Y ++ + + L + L G + + + + Sbjct: 159 K-GFTATVIPNRGAWLEYETDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEI-LDLIGE 216 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 Y+ TL D T + AL+EIY +RPGEPPT E A+SL ++ FF RYDL+ VGR Sbjct: 217 NEYLRNTLEKDNTENADKALLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRY 276 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 K N+ L + + L + L+D G+ + L R + V EN Sbjct: 277 KINKKLHIKNRLFNQKL--------AETLVDPETGEILAEKGQILDRRVLDKVLPYLEN- 327 Query: 464 FRVGLVRVERA---VKERLSLGDLDTLMPQD--------------------MINAKPISA 500 +G ++ V++ + L + P D I I A Sbjct: 328 -GIGFRKLYPNGGVVEDEVELQSIKIYAPSDQEGEQVINVIGNAYVEEAVKNITPSDIIA 386 Query: 501 AVKEFFGSSQLSQFMDQNNPLSEITHK--RRISALGPGGLTRERAGFE-----VRDVHPT 553 ++ FF + +I H RR+ ++G + R G VR Sbjct: 387 SISYFFN------LLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVR----- 435 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGN 613 E +I N+++ N + + ++ + + + E Sbjct: 436 -----------ERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 484 Query: 614 YV-----IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 + + + G V D+ + + + + +++ + Sbjct: 485 HKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFG 544 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD---SGVTAVAKRGGVVQ 725 G R T + V +A D +A+ G Sbjct: 545 FIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANALLADDGSFIDDNIIARFRGENT 604 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 V +R+ + A I L SN+ M P+ + + Sbjct: 605 VVPRNRVDYMDVSPKQVVSAATACIPFLEN-DDSNRALMGANM--QRQAVPL----MQPE 657 Query: 786 GPSTDLG-ELALGQNMRVAFMP-WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 P G E G++ A + + G VV+ I ++ V Sbjct: 658 SPIVGTGMEYVSGKDSGAAVICRYPG------------VVERVEAKNIWVRRYEDVDGQQ 705 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLL 902 G + + + V + ++ IV +G EV G+IL G KGE L ++ Sbjct: 706 VKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMEKGELALGR--NVM 763 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS- 961 + +D+ + +S ++ V+T +E+ + ++ ++ +D+ Sbjct: 764 VGFMTWDGYNYEDAII-----MSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPN 818 Query: 962 ---------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 +E I+ G + +LV + +R L ++ ++ + Sbjct: 819 VGEDALRNLDERGIIRIGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDT 878 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 L + + K+ + GD+L PGV ++V+VY+ KR+I GDKMAGRHGN Sbjct: 879 SLRVPHGGGGIIHDVKVFNR----EDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGN 934 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KGVISKI P EDMPY +GTP+DI+LNPLGVPSRMNI G + + Sbjct: 935 KGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNI---------------GQVLELHM 979 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 G+ IA+PVFDGA+E Sbjct: 980 GMAARYL---------------------------------------GIHIASPVFDGARE 1000 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 ++ E L+ + + LYDGRTGE F+ V+VG MYM+KL H+VDDK+HARSTG YS Sbjct: 1001 EDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYS 1060 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGN 1312 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV G+ Sbjct: 1061 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGD 1120 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIEL 1339 + EPG+PESF VL+KE++SLG+++++ Sbjct: 1121 NVPEPGVPESFKVLIKELQSLGMDVKI 1147 >UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=Veillonella RepID=A3FMP8_9FIRM Length = 1124 Score = 880 bits (2274), Expect = 0.0, Method: Composition-based stats. Identities = 491/1189 (41%), Positives = 676/1189 (56%), Gaps = 110/1189 (9%) Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 D GTF+ING ERVIVSQL RSPGV++D + + G LY + +IP RG+W++ E D Sbjct: 1 DTGTFIINGAERVIVSQLVRSPGVYYDKE---IDTMGNRLYASTVIPNRGAWIELETDAN 57 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 + + VRIDR RK+PATI++RAL + T + IL+LF+ + E + L+ E Sbjct: 58 EVVSVRIDRNRKIPATILVRALGWDTNESILELFWNGQVDEDGNPIYDERLLRTL---EK 114 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + + V + K R + ++ + V + +++ G Sbjct: 115 DTTESSEEALVEIYKKLRPGEPPTVESARNLFDNLFFDPRRYDFARVGRYKVNKKLGWKQ 174 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 L+ + + + G I L A I Sbjct: 175 RMFGQLLAQPIF-----------------NPETGEVI------------LDAGTHIGEEE 205 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 + A F + D + N +L ++++D+I + Sbjct: 206 IEIVEKSGVFAGEGFAEFYIDI---DGVHAKVICNNCNL----PYEFRTVTREDMIANIS 258 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 L+++ +G G DDIDHLGNRR+R VGE+ +NQFR+GL R+ER V+ER+++ + D + PQ Sbjct: 259 YLLNLMDGVGHTDDIDHLGNRRLRCVGELLQNQFRIGLTRMERVVRERMTVQESDMITPQ 318 Query: 491 DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+THKRR+SALGPGGL+RERAGFEVRDV Sbjct: 319 ALINIRPVVAAVKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLSRERAGFEVRDV 378 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG------------- 597 H +HYGR+CPIETPEGPNIGLINSLS YA+ NE+GF+E PYRKV Sbjct: 379 HHSHYGRMCPIETPEGPNIGLINSLSNYAKVNEFGFIEAPYRKVEKIYGTGDEADKIVKV 438 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VTD + Y++A EE VIAQANS LDEEG FV D + CRS + + D+VDYMDVS Sbjct: 439 RVTDTVAYMTADEEEGMVIAQANSVLDEEGCFVSDHIACRSGHDVLEVTPDKVDYMDVSP 498 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 ++VVS+G ++IPFLE+DDANRALMGANMQRQAVP LRA PLVGTGME A DSGV + Sbjct: 499 KEVVSIGTAMIPFLENDDANRALMGANMQRQAVPLLRAQAPLVGTGMEYTAATDSGVCIL 558 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 AK G V +I + +++ +D+Y + K+ RSNQ+TC NQ P V G+ V Sbjct: 559 AKAAGTVVRCWGDQIHVMRDDN------GRVDVYKMNKFLRSNQSTCFNQKPIVHRGDHV 612 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 G VLADGP+TD GELALG N+ VAFMPW GYN+ED+IL+SE + +ED +T+IHI+E Sbjct: 613 VAGQVLADGPATDGGELALGFNILVAFMPWEGYNYEDAILLSEDLCKEDIYTSIHIEEYE 672 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 C +RDTKLG EEIT ++PN G+ +L LD GI+ IGAEV GDILVGK TPKGET+LTP Sbjct: 673 CDARDTKLGAEEITRELPNTGDDSLKNLDADGIICIGAEVKPGDILVGKATPKGETELTP 732 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQA 956 EE+LLRAIFG+K +V+D+SLRVP+G SG ++DV+VFTR +G E ++ + + Q Sbjct: 733 EERLLRAIFGDKEREVRDTSLRVPHGESGKIVDVKVFTRENGDELQPGVNKLVRVYIAQK 792 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE----------------- 999 +K + G + V+ + D P L Sbjct: 793 RKIHEGDKMAGRHGNKGVVSRVMRREDMPF-LPDGTPVQIVLNPLGVPSRMNIGQVLETH 851 Query: 1000 -------LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 LG+ ++ Q++Q+ E+ + + +E + + D+L + + V V Sbjct: 852 LGFAVQGLGMKIKDTDMQIKQVLER-AKTDASYWDNIEELKGLYARLDELKAQIAQDVTV 910 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV-----LNPLGVPSRM 1107 + ++ + N I D+ E + + L R Sbjct: 911 A-----HLDVDEE---------ITQLTNDIMDLVKVETERQLSALGGYTRYRELKDIERS 956 Query: 1108 NIGQILETH-LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 ++ + +E + + ++ L + Q ++ E I A + +++R+ ++ D Sbjct: 957 HMAKQIECFDTDESVPDMDPELEKELGRLQSTVRILETIDEAREKRSEIRKSLEAIG-YD 1015 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 E + + G+ IATPVFDGA E ++ E L+L G+ LYDGRTGE + VT Sbjct: 1016 YEQYGMPKPDVAGIHIATPVFDGASEVDVFEALQLAGKSEDGKTVLYDGRTGEPMDNRVT 1075 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 VGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1076 VGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1124 >UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 Tax=Bacteria RepID=RPOB_CLOTH Length = 1250 Score = 873 bits (2255), Expect = 0.0, Method: Composition-based stats. Identities = 465/1015 (45%), Positives = 631/1015 (62%), Gaps = 59/1015 (5%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ + +R + K +V+D+P L+ IQ +S+++F+++ G + F+ V PI Sbjct: 1 MVHPVKLGRNVRMSYSKIDEVIDMPNLIEIQKNSYEQFLKE------GFKEVFKDVNPIT 54 Query: 61 SYSGNSELQYVSYRLGEP-VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 Y+GN L++V Y L EP + V EC+ R TY+APL+VK+RL+ E ++KE Sbjct: 55 DYTGNLILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLINKE-------TGEVKE 107 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 QE++MG+ PLMT+ GTF+ING ERVIVSQL RSPG+++ K +GK L++ +IP Sbjct: 108 QEIFMGDFPLMTETGTFIINGAERVIVSQLVRSPGIYYAM---KIDKAGKQLFSNTVIPN 164 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF-------- 230 RG+WL++E D D L VRIDR RKLP T+++RAL Y T +I +LF E Sbjct: 165 RGAWLEYETDSNDVLSVRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDS 224 Query: 231 EIRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 + + +E+ GE + + ++ + R A+ R + + Sbjct: 225 TKTEEEGLLEIYKRLRPGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSI---- 280 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 I G + ++ D TGE+I A +S + + +G + + D + I Sbjct: 281 AARIHGFIAGENIKDPDTGEIIVAEGETISREKAETIQNAGVNTV--ILRVDGKNVKVIG 338 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 + Y P E E + E + + Sbjct: 339 NDMVDIKR----------YVDFDPKEIGINEKVKRDVLMEILEEYKGKGDDAIKKALQER 388 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 + + ++K+DII + +I + G G DDIDHLGNRR+RSVGE+ +NQFR+GL Sbjct: 389 IDDLIPKH---ITKEDIISSISYIIGLSYGIGSTDDIDHLGNRRLRSVGELLQNQFRIGL 445 Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 R+ER V+ER+++ DLD + PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPL+E+THKR Sbjct: 446 SRMERVVRERMTIQDLDVVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTHKR 505 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ NEYGF+E Sbjct: 506 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIE 565 Query: 589 TPYRKVTD---GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 TPYRKV+ G VT+EI YL+A EE Y+IAQAN LDEEG F+ + V CR K E Sbjct: 566 TPYRKVSKEEPGKVTNEIVYLTADEEDEYIIAQANEPLDEEGRFISNKVVCRYKEEFIEV 625 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 ++D+MDVS +Q+VSV S+IPFLE+DDANRALMGANMQRQAVP ++ + P+VGTG+E Sbjct: 626 DPSKIDFMDVSPKQIVSVATSMIPFLENDDANRALMGANMQRQAVPLIKTESPIVGTGIE 685 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 A DSGV +AK GVV+ V A+ I+I+ + + D Y L KY RSNQ TCI Sbjct: 686 YRAARDSGVVILAKNPGVVEKVTANEIIIRTKDGKR-------DTYKLLKYMRSNQGTCI 738 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 NQ P V GE VE GDV+ADGPSTD GE+ALG+N+ V FM W GYN+ED+IL+SER+V++ Sbjct: 739 NQRPIVKKGEEVEAGDVIADGPSTDNGEIALGKNVLVGFMTWEGYNYEDAILISERLVKD 798 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 D FT+IHI+E +RDTKLGPE+IT +IPNV E AL L+ GI+ IGAEV GDILVG Sbjct: 799 DVFTSIHIEEYEAEARDTKLGPEDITREIPNVSEDALKDLNSEGIIRIGAEVRAGDILVG 858 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKR 944 KVTPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G SG V+DV++FTR +G E Sbjct: 859 KVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKIFTRENGDELAPG 918 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 ++ + + Q +K + G I +L + D P D L Sbjct: 919 VNKLVRVYVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPF-LPDGTPLDIVLN 972 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 203/512 (39%), Positives = 273/512 (53%), Gaps = 76/512 (14%) Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEK 900 TK G + + + + +++ IV G EV GD++ G T GE L Sbjct: 715 RTKDGKRDTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDVIADGPSTDNGEIALGK--N 772 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 +L + + +D+ L +S ++ VFT +E+ + ++ + +++ Sbjct: 773 VLVGFMTWEGYNYEDAIL-----ISERLVKDDVFTSIHIEEYEAEARDTKLGPEDITREI 827 Query: 961 SE----------ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 I+ G R +LV + + +R L ++ ++ + Sbjct: 828 PNVSEDALKDLNSEGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVR 887 Query: 1011 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 L + E + K+ + GD+LAPGV K+V+VY+A KR+I GDKMAGRH Sbjct: 888 DTSLRVPHGESGIVVDVKIFTR----ENGDELAPGVNKLVRVYVAQKRKISVGDKMAGRH 943 Query: 1071 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 1130 GNKGVIS+I P+EDMP+ +GTP+DIVLNPLGVPSRMNI G + Sbjct: 944 GNKGVISRILPVEDMPFLPDGTPLDIVLNPLGVPSRMNI---------------GQVLEV 988 Query: 1131 MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 L + G +ATPVFDGA Sbjct: 989 HLGYAAKAL---------------------------------------GWKVATPVFDGA 1009 Query: 1191 KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 E +I + L+ L G+ LYDGRTGE FE VTVGYMYMLKL HLVDDK+HARSTG Sbjct: 1010 TEEDIVQTLRKAGLAEDGKSILYDGRTGEPFENRVTVGYMYMLKLAHLVDDKIHARSTGP 1069 Query: 1251 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV Sbjct: 1070 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVK 1129 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G + EPG+PE F VL+KE++SL +++++ E Sbjct: 1130 GENVPEPGIPECFKVLIKELQSLCLDVKVYSE 1161 >UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria RepID=D1B5Y3_THEAS Length = 1201 Score = 870 bits (2248), Expect = 0.0, Method: Composition-based stats. Identities = 444/1006 (44%), Positives = 625/1006 (62%), Gaps = 84/1006 (8%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSV 56 M R+ GK+ ++++P L+ +Q S++ F + D + GL+ F+ V Sbjct: 1 MAVEVPSLMAPRRYLGKQKDLIELPDLVEVQRHSYEWFFQADEDPNFRRLQGLQELFKEV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI+SY GN L++V Y + P ++E + R +T+S P+R +RLV + Sbjct: 61 FPIESYDGNFALEFVRYYVDPPTISIEEARERDLTWSRPIRATIRLVNRSN-------GE 113 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKE+EVY+G+ P+MTD GTF+INGTERV+VSQL RS GV+F +D S G+ Y A++ Sbjct: 114 IKEEEVYLGDFPVMTDRGTFIINGTERVVVSQLARSAGVYFSADLS---SPGQETYAAKL 170 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IP RG+WL+F+ P + L V+ID R+ K+ + Sbjct: 171 IPDRGAWLEFDLTPSEFLSVKIDNRK------------------------KIPVTMFLKA 206 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 L + E LR L V+ ++V E + G + Sbjct: 207 LGVPTDDELLR-----------------------------LFGATVEEVDVVEEDVRGML 237 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ + G +I N ++ + L +L + G R+ + ++ETL DPT Sbjct: 238 LAEPIVGSD-GRVIFHKNDRITKEHLDELWKQGRTRVAVWRVDH-----SVAETLEKDPT 291 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 + A++EI+R ++P EPP E A +LFF RY+L VGR K NR L + + Sbjct: 292 SSTDEAMLEIFRRLKPNEPPRMENAREHMHSLFFDSRRYNLGRVGRYKLNRRLGLQVDDE 351 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 +L+ +D++ ++ L+ +R+G DDIDHLGNRR+R++GE+ +NQ R+GL+R+ER K Sbjct: 352 QRLLTVEDVVAIVNGLLKLRDGLEREDDIDHLGNRRVRAIGELLQNQVRIGLLRMERIAK 411 Query: 477 ERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 ER++ + DL + +D+IN +PISAA++EFFGS QLSQFMDQ NPL+E+TH+RR+SALGP Sbjct: 412 ERMTTIPDLSSATAKDLINVRPISAALREFFGSGQLSQFMDQTNPLAELTHRRRLSALGP 471 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGL+RERAGFE RDVH THYGR+CPIETPEG NIGL+ SL+ YA+ NEYGFL TP R+V Sbjct: 472 GGLSRERAGFEARDVHYTHYGRICPIETPEGSNIGLVTSLATYAKINEYGFLVTPRRRVV 531 Query: 596 DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 DG VT E+ YLSA +E Y + A++ + E+G + D V R +G+ + +DQVD++DV Sbjct: 532 DGRVTGEVVYLSADDEDEYNVGMASTPVGEDGSILIDEVHVRHRGDIRMVPKDQVDFLDV 591 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 S +Q+VSV LIPFLEHDDANRALMG+NMQRQAVP +RA+ PLVGTG+E +A DSG Sbjct: 592 SPKQIVSVSTGLIPFLEHDDANRALMGSNMQRQAVPLVRAEAPLVGTGIEAKIARDSGSC 651 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 +A+R G V++VDA R+VI+ + ++ Y L K+ RSNQ T I+Q P V G+ Sbjct: 652 ILARRSGTVEFVDADRVVIRAED-------GTLNQYRLVKFRRSNQGTVIHQRPLVRKGD 704 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 PV+ GDV+ADG + GELALG+N+ VAF+ W GYNFED+IL+S+RVV+ED +T+IHI+E Sbjct: 705 PVKAGDVIADGQACQGGELALGRNVLVAFVSWEGYNFEDAILLSQRVVKEDYYTSIHIEE 764 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 +RDTKLGPEEIT DIPNVG+ AL LDE+GIV IGAEV GDILVGKVTPKGE+ Sbjct: 765 YEVEARDTKLGPEEITRDIPNVGDDALKNLDENGIVRIGAEVRAGDILVGKVTPKGESDQ 824 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD--KRALEIEEMQL 953 +PEE+LLRAIFGEKA +V+DSSLRVP+G G V+ ++ +R+ +D E+ ++ + Sbjct: 825 SPEERLLRAIFGEKAREVRDSSLRVPHGEGGKVVAIKRLSREHNSEDLSPGVNEVVKVYV 884 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 Q +K + G + +L + D P D L Sbjct: 885 AQFRKITEGDKMAGRHGNKGVVSKILPEEDMPF-LSDGTPVDVVLN 929 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 187/490 (38%), Positives = 261/490 (53%), Gaps = 81/490 (16%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V G V GD++ G+ GE L +L A + + +D+ L +S V Sbjct: 699 LVRKGDPVKAGDVIADGQACQGGELALGR--NVLVAFVSWEGYNFEDAIL-----LSQRV 751 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + +T +E+ + ++ ++ +D+ +E I+ G R + Sbjct: 752 VKEDYYTSIHIEEYEVEARDTKLGPEEITRDIPNVGDDALKNLDENGIVRIGAEVRAGDI 811 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + D+ P +R L ++ ++ + L + E K ++ Sbjct: 812 LVGKVTPKGESDQSPEERLLRAIFGEKAREVRDSSLRVPHGEGGKVVAIKRLSREH---N 868 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 +DL+PGV ++VKVY+A R+I GDKMAGRHGNKGV+SKI P EDMP+ +GTPVD+VL Sbjct: 869 SEDLSPGVNEVVKVYVAQFRKITEGDKMAGRHGNKGVVSKILPEEDMPFLSDGTPVDVVL 928 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN +G ++ Sbjct: 929 NPLGVPSRMN---------------LGQVFETVMGFVA---------------------- 951 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL------GDLPTSGQIRL 1212 + G +ATPVF+GA + EI +L+ +L +I L Sbjct: 952 -----------------MHNGWKVATPVFEGADQEEIFQLVDKIRENKYPELTRDCKITL 994 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 YDGRTGE ++ VTVG MYMLKL HLVDDK+HARSTG YSL+TQQPLGGK QFGGQRFGE Sbjct: 995 YDGRTGEPMDKKVTVGVMYMLKLIHLVDDKIHARSTGPYSLITQQPLGGKTQFGGQRFGE 1054 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 MEVWALE YGAA+ LQE+LTVKSDD+ GR K Y+ IV G + +PG+PESF VL+KE++ Sbjct: 1055 MEVWALEGYGAAHMLQEILTVKSDDIRGRLKTYERIVKGQNLAKPGVPESFRVLIKELQG 1114 Query: 1333 LGINIELEDE 1342 LG+++E+ E Sbjct: 1115 LGVDVEIVYE 1124 >UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Tax=Bacteria RepID=RPOB_CLOBB Length = 1249 Score = 870 bits (2247), Expect = 0.0, Method: Composition-based stats. Identities = 461/1007 (45%), Positives = 635/1007 (63%), Gaps = 69/1007 (6%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ KR R FGK V ++P L+ +QLDS+Q F+ + GL F + PI Sbjct: 1 MVHPVQVGKRTRMSFGKVKDVTEMPNLIEVQLDSYQWFLRE------GLHEVFEDINPIT 54 Query: 61 SYSGNSELQYVSYRLGEP--VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 +++GN L++V Y+L + V+EC+ R TY+APL+V +RL E +IK Sbjct: 55 NFTGNLVLEFVDYKLDMDNIKYSVEECKERDATYAAPLKVSVRLQNNE-------TGEIK 107 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 EQEV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+++ KT GK LY+A +IP Sbjct: 108 EQEVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYSIDKT---GKKLYSATVIP 164 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF------- 230 RG+WL++E D D ++VRID+ RKLP TI+ RA+ + + +++LD F E F Sbjct: 165 NRGAWLEYETDSNDIIYVRIDKTRKLPITILARAMGFGSDQELLDFFGEDERFRASIEKD 224 Query: 231 -EIRDNKLQMELVPERLRGETASFD--IEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 + +E+ GE + D I ++ + R +R R + Sbjct: 225 NTKTREEGLLEIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKL----A 280 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL-----D 342 IA ++ A D I+ STGE++ ++S L + +G K ++ L + L + Sbjct: 281 LNLRIANQIAAMDVINPSTGEIMVEKGQKISRLLAEDIQNAGIKSVDILVDDKLVRVISN 340 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 + I++ + D ++ ++ LV + L D Y + Sbjct: 341 NFVDITKQVPFDVSDLQIKELVH-------------------YPTLREILDNYSDETTIK 381 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 + ++L R + + KDDI + + + G G VDDIDHLGNRR+RSVGE+ +N Sbjct: 382 EEIKKNLSRLIPKH---IIKDDIFATISYELGLPYGIGYVDDIDHLGNRRLRSVGELLQN 438 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 QFR+GL R+ER VKER+++ D +++ PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPLS Sbjct: 439 QFRIGLSRMERVVKERMTIQDQESITPQMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLS 498 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSL+ +A+ N Sbjct: 499 ELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFARVN 558 Query: 583 EYGFLETPYRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 EYGF+ETPYR V T+EI Y +A EE +IAQA LDE G+FV+ VT R Sbjct: 559 EYGFIETPYRIVDKENARATEEIRYFTADEEDQCLIAQAKEPLDENGYFVDKKVTVRYLE 618 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + VD MDVS +Q+VSV ++IPFLE+DDA+RALMG+NMQRQAVP L+ P+V Sbjct: 619 DVLVVPATDVDLMDVSARQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPIV 678 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 GTG+E AVDSGV A+ GVV +V A+ I +K + + G D Y L K+ RSN Sbjct: 679 GTGIEFKAAVDSGVLPKARNAGVVTFVSANEIRVKRD------SDGGTDNYRLLKFKRSN 732 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q++CINQ P V+ GE V + VLADGPSTDLGE+ALG+N+R+ F+ W GYN+ED++L+SE Sbjct: 733 QSSCINQRPIVNKGEIVFKNQVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISE 792 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 +V+ED FT++HI+E C +RDTKLGPEEIT DIPNV E AL +D+ GI+ IGAEV G Sbjct: 793 ELVREDVFTSMHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSG 852 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGV 939 DILVGKVTPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G +G ++D++VFTR +G Sbjct: 853 DILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDIKVFTRENGD 912 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 E + E+ + Q +K + G I +L + Sbjct: 913 ELNPGVNELVRCYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPF 959 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 289/1181 (24%), Positives = 465/1181 (39%), Gaps = 184/1181 (15%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 EI++ ++ M P L E +F I +V V + R + K + Sbjct: 100 NNETGEIKEQEVFMGDFP--LMTEQGTFIINGAERVIVSQLVRSPGVYYNYSIDKTGKKL 157 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 I + +Y +S + + L + G + L + Sbjct: 158 Y-SATVIPNRGAWLEYETDSNDIIYVRIDKTRKLPITILARAMGFGSDQEL-LDFFGEDE 215 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF 405 ++ D T R L+EIY+ +RPGEPPT ++A SL ++LFF RYDLS VGR KF Sbjct: 216 RFRASIEKDNTKTREEGLLEIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKF 275 Query: 406 NRSLLREEIEGSGILSKDDII------DVMKKLIDIRNGKGEVDDIDHLGNRRIR-SVGE 458 N+ L + ++ D+I +++K + + +DI + G + + V + Sbjct: 276 NKKLALNLRIANQ-IAAMDVINPSTGEIMVEK--GQKISRLLAEDIQNAGIKSVDILVDD 332 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTL----MPQDMINAKPISAAVKEFFGSSQLSQF 514 V + + V +S + L +++++ +KE LS+ Sbjct: 333 KLVRVISNNFVDITKQVPFDVSDLQIKELVHYPTLREILDNYSDETTIKEEIKK-NLSRL 391 Query: 515 MDQ--------------------NNPLSEITHK--RRISALG-------PGGLTRERAGF 545 + + + +I H RR+ ++G GL+R Sbjct: 392 IPKHIIKDDIFATISYELGLPYGIGYVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVV 451 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 + R I S++ N ++ + Sbjct: 452 KERM------------------TIQDQESITPQMLINIRPVAAAIKEFFGSSQLSQFMDQ 493 Query: 606 LSAIEEGNYV-----IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 + + E + + + + G V D+ + + + + +++ Sbjct: 494 TNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSL-- 551 Query: 661 VSVGASLIPFLEHDDANRAL--MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 + A + + + R + A + ++ + ++G Sbjct: 552 -ATFARVNEYGFIETPYRIVDKENARATEEIRYFTADEEDQCLIAQAKEPLDENGYFVDK 610 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN--LTKYTRSN--------QNTCINQM 768 K V+Y++ +V + D M I + + ++ N + Sbjct: 611 KV--TVRYLEDVLVVPATDVDLMDVSARQIVSVATAMIPFLENDDASRALMGSNMQRQAV 668 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNM-RVAFMPWNGYNFEDSILVSERVVQEDR 827 P + P+ G + + D G L +N V F+ N Sbjct: 669 PLLKPQAPIV-GTGIEFKAAVDSGVLPKARNAGVVTFVSAN------------------- 708 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GK 886 + G + + S +++ IV G V +L G Sbjct: 709 ---------EIRVKRDSDGGTDNYRLLKFKRSNQSSCINQRPIVNKGEIVFKNQVLADGP 759 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-----GVEK 941 T GE L ++ + + +D+ L V V + Sbjct: 760 STDLGEIALGKNIRMG--FITWEGYNYEDAMLISEELVREDVFTSMHIEEYECEARDTKL 817 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 + + + + ++ I+ G R +LV + + +R L Sbjct: 818 GPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAI 877 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 ++ ++ + L + E + K+ + GD+L PGV ++V+ Y+ KR+I Sbjct: 878 FGEKAREVRDTSLRVPHGEAGIIVDIKVFTR----ENGDELNPGVNELVRCYIVQKRKIS 933 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDKMAGRHGNKGVIS+I P EDMP+ +G P+ I LNPLGVPSRMNI Sbjct: 934 VGDKMAGRHGNKGVISRILPEEDMPFLPDGRPLQICLNPLGVPSRMNI------------ 981 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G + L + G Sbjct: 982 ---GQVLEVHLGWAAS---------------------------------------KLGWH 999 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 I+TPVFDGA E EI+E L+ +G+ LYDGRTGE F+ VTVG MY+LKL HLVDD Sbjct: 1000 ISTPVFDGATENEIEECLEKAGYNANGKTVLYDGRTGEPFDNLVTVGIMYILKLAHLVDD 1059 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA+TLQE+LTVKSDDV GR Sbjct: 1060 KIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGR 1119 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K Y+ IV G + EPG+PESF VL+KE+++L +++++ +E Sbjct: 1120 VKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNE 1160 >UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira RepID=C0QWX6_BRAHW Length = 1173 Score = 866 bits (2238), Expect = 0.0, Method: Composition-based stats. Identities = 454/1006 (45%), Positives = 626/1006 (62%), Gaps = 75/1006 (7%) Query: 5 YTEKKRI---RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVF 57 + +K R+ R +F + V++ P LL+IQ +S++ F+++D GL+ S+F Sbjct: 19 FAKKYRMENGRVNFSRTASVIEPPDLLAIQKESYESFLQKDVPENKRKNEGLQEVLTSIF 78 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 PI + + +++++SY +GEP +E + R TY+ P ++K++L + + E I Sbjct: 79 PIVASNEKMQIEFISYSIGEPKITEKEARRRDKTYAYPFKIKVQLTVRDPE-------RI 131 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 EQE+++G+IP MTD GTF++NG ERVIVSQ+HRSPGV F+ S ++ A+II Sbjct: 132 IEQEIFVGDIPAMTDRGTFIVNGAERVIVSQIHRSPGVVFNR------SDRDAMFVAKII 185 Query: 178 PYRGSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDN 235 P RG+WL+FE D KD ++VRIDR++KLP T+ LRA+ T E+IL LF+ + I Sbjct: 186 PDRGTWLEFELDTKKDIMYVRIDRKKKLPVTVFLRAIGITTNEEILKLFY--EVDNISLE 243 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 KL E E L G + + Sbjct: 244 KLSDENSKEALIGRRSYSTV---------------------------------------- 263 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 Y E+ E+I ++ +L +L SG K I L + I TL D Sbjct: 264 -----YDTENPDEIILNPGELINPNLAERLLMSGIKEISVLNMEAIKDNVTIINTLDKDT 318 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T ++ A +IY ++RPGEP E +L F Y L VGR K N+ L E E Sbjct: 319 TKNQEEACTKIYNVIRPGEPALIENVVRTCNDLVFDPKSYALGDVGRYKLNKRLNFPESE 378 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 +L DII+ ++ LI + + ++DDIDHLGNRR+RSVGE+ Q + G R+ER Sbjct: 379 QDKVLRHKDIIETIRFLIKVFINEEQLDDIDHLGNRRVRSVGELLSIQIKAGFTRMERIA 438 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 KER+ + D++ + PQ +++ K I A +KEFFG++QLSQFMDQNNPLSEITHKRR++ALG Sbjct: 439 KERMQMQDMEAVTPQSLVSIKLIQAVIKEFFGTNQLSQFMDQNNPLSEITHKRRLNALGQ 498 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGLTR+RAGFEVRDVH THYG++CPIETPEGPNIGLI SL+ YA+ N++GFLETPYRKV Sbjct: 499 GGLTRDRAGFEVRDVHHTHYGKICPIETPEGPNIGLIVSLATYAKINKHGFLETPYRKVV 558 Query: 596 DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 DG VTDEI YL+A +E Y IA AN+ L+E+G F ++L++ R + E S DQV YMDV Sbjct: 559 DGKVTDEIEYLTAHDEEKYHIADANAPLNEDGTFKDNLISTRFRSEFPYSSPDQVQYMDV 618 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME-RAVAVDSGV 714 S QQ+VS+ +SLIPFLEHDDANRALMG+NMQRQ+VP L + P+VGTG+E + +G+ Sbjct: 619 SPQQIVSLSSSLIPFLEHDDANRALMGSNMQRQSVPLLYPEAPIVGTGVEAKICQPGTGI 678 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 AKR G V V + IVIK + + +D+Y L KY R+NQ+T +Q P V++G Sbjct: 679 AVHAKRAGKVIKVVHNEIVIKPTK---QNSDDDLDVYELVKYQRTNQDTNYHQRPVVNVG 735 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + V+ G +LADGP+TD GELALG+N+ AFM + GYNFED+IL+S R+VQED FT+IHI+ Sbjct: 736 DVVKAGGLLADGPATDHGELALGRNVLAAFMIFEGYNFEDAILLSRRLVQEDVFTSIHIE 795 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 E + +R+TKL E IT DIPNV +AA LDE GIV IGA+V GDILVGKVTPKGET+ Sbjct: 796 EFSVEARETKLDKENITRDIPNVSDAAFKNLDERGIVRIGAKVKAGDILVGKVTPKGETE 855 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQL 953 +TPE +LL +IFGEKA DVKD+SLRVP+G GTVIDV+V++R +G E E+ ++ L Sbjct: 856 ITPEYRLLHSIFGEKARDVKDTSLRVPHGKDGTVIDVRVYSRENGDELKPGVEEVVKVFL 915 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + + G + ++ + + D P D L Sbjct: 916 AKKRIIQEGDKMAGRHGNKGVVARIMPIEDMPFLE-DGTPVDICLN 960 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 194/479 (40%), Positives = 262/479 (54%), Gaps = 66/479 (13%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V +G V G +L G T GE L +L A + + +D+ L V V Sbjct: 731 VVNVGDVVKAGGLLADGPATDHGELALGR--NVLAAFMIFEGYNFEDAILLSRRLVQEDV 788 Query: 929 ---IDVQVFTRDG--VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 I ++ F+ + + DK + + + A +E I+ G + +LV Sbjct: 789 FTSIHIEEFSVEARETKLDKENITRDIPNVSDAAFKNLDERGIVRIGAKVKAGDILVGKV 848 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + P R L ++ + + L + + + ++ ++ GD+L Sbjct: 849 TPKGETEITPEYRLLHSIFGEKARDVKDTSLRVPHGKDGTVIDVRVYSR----ENGDELK 904 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 PGV ++VKV+LA KR IQ GDKMAGRHGNKGV+++I PIEDMP+ E+GTPVDI LNPLGV Sbjct: 905 PGVEEVVKVFLAKKRIIQEGDKMAGRHGNKGVVARIMPIEDMPFLEDGTPVDICLNPLGV 964 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMNI G I +L Sbjct: 965 PSRMNI---------------GQVIEMLLGW----------------------------- 980 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 + G+ A PVF+G KE ++E + +G++RLYDGRTGE F+ Sbjct: 981 ----------SGHKMGLKYACPVFEGPKEEALREAFVASGMNPNGKVRLYDGRTGEPFKN 1030 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V VGYMYMLKLNHLV+DK+HARSTG YSLVTQQPLGGK+QFGGQR GEMEVWALEAYGA Sbjct: 1031 DVAVGYMYMLKLNHLVEDKVHARSTGPYSLVTQQPLGGKSQFGGQRLGEMEVWALEAYGA 1090 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 A LQE LTVKSDD+ GR ++Y++IV G+ PG+PESFNVL++E+R LG+NI + DE Sbjct: 1091 ANMLQEFLTVKSDDMTGRARIYESIVKGDVISSPGIPESFNVLVQELRGLGLNITIHDE 1149 >UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTP8_TREPR Length = 1290 Score = 863 bits (2230), Expect = 0.0, Method: Composition-based stats. Identities = 428/1333 (32%), Positives = 652/1333 (48%), Gaps = 87/1333 (6%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP 78 P LL +Q +F + + YGL+ S+FP+ S+ G + ++ V Y +G+P Sbjct: 20 PYPDLLGVQRSAFNRLTQHSTHPSARNPYGLQRLLFSMFPMMSHDGAALIELVKYTIGKP 79 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYE-REAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 EC G+TYSAPL + L++ V+ + +VY+G++P+MT G+F+ Sbjct: 80 CSTDAECLRSGLTYSAPLSLTLKITSRTPSNDGTWHVRYSRSHQVYLGDMPMMTRKGSFI 139 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 + GTER ++ +R+ G+ F + + + RI+P+RG+WL+ + R Sbjct: 140 VRGTERTLLVLQNRAYGLGFVPYLTYSMYDTPTVCSLRIVPHRGTWLELSI-QDGAVLFR 198 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 + +PATI+L+ +T+ I + + I + + + + FD Sbjct: 199 FNAGVFMPATILLKGFGASTDAIAGMLTPRAGIAISPGGASIAIDLSDIAFDVQHFDT-- 256 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI--DESTGELICAANM 315 R AR R+L K L P+ VV K + D S G + Sbjct: 257 ---------RLGHARLTRRLAKSRGSLEGRPLHIEDADVVNKFELASDASLGGRTVGSGT 307 Query: 316 ELSLDLLAKLSQSGHKRIETLFT-NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 LS +++ + + + + YI+ TLR+D T D A I + Sbjct: 308 LLSQRVISMARADRESYLAVVNRCHHGAYLRYIARTLRMDRTVDPHDARACIAGHIGIMR 367 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 +A SLF+ + + Y L+ GR + N + R +G L DI +K LI+ Sbjct: 368 HLDPASAHSLFQGIMENARAYCLTPCGRSQLNARIGRHFSQGGDTLDARDIALSLKLLIN 427 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 DD+D + NR+ R + + R + ++R ++ + ++ Sbjct: 428 ATRRNVRPDDVDDMSNRKARDACDALCDALRPAFLGLKRRLRSH-TANSRPGEAIAILLG 486 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 ++ + +S+L+Q +DQ NPL+E+THKRR++ + RA RDVH TH Sbjct: 487 LHAVTHQAYDELTNSRLAQPLDQTNPLAEVTHKRRVAIIAGSDSGPRRAPLGARDVHATH 546 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 YGR+CP+ETPEG NIGLI SL+ A+ + G + PY Y+S EE Sbjct: 547 YGRLCPVETPEGQNIGLIASLAARARIDAQGTILAPYVVTRRNATRAAARYISPQEE--- 603 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 + ++ H + R ++ +V +D + + +S + IPFLEH+ Sbjct: 604 -VGAMSAPSAIVPHSRRRTIMARIGHGVAMVHPSEVILVDGANEMALSAATATIPFLEHN 662 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DA RALMG+NMQRQAVP KP V TGME+AVA + V A+ G V YVD I I Sbjct: 663 DACRALMGSNMQRQAVPCCYPRKPRVHTGMEQAVAQHAMVAIRARYAGRVAYVDPLHIAI 722 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + + Y L + R+NQ T + P V G V+ GDV+ADGP+++ G L Sbjct: 723 VP----ICENQGHACTYRLARNVRTNQGTQADHRPTVIPGSYVQAGDVIADGPASEGGVL 778 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 ALG+++ VAFMPW GYN+EDS+ VSE +++ +T++H+ E++ ++ + Sbjct: 779 ALGRDVLVAFMPWEGYNYEDSVAVSEALLRNGAYTSVHLDEVSVDMDGDDGCGTVLSRCV 838 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 P + ++ +LDE GIV +G+ V GDI+VG+++P+ LLR + Sbjct: 839 PGITQSQRDRLDERGIVRVGSMVYPGDIIVGRISPRHAGIAPKGNSLLRTALATSEQANR 898 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 DSS+R G++GTV+ IE DL + E L R Sbjct: 899 DSSIRATQGMTGTVVYS---------------RIEPCNQPDVHDDLPGQCA-GEQSLLRR 942 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLEL-GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 I G A RD + + +EQ A Sbjct: 943 I-----QHGARATYCWASARDPYFWMPRNGLAAAPYAMEQHASPKA-------------- 983 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 G + +KV +A + +QPGDK++GRHGNKGV+SK+ PIEDMPY +NG Sbjct: 984 -----GLHPYDKATRTLKVAIASRIDLQPGDKVSGRHGNKGVVSKVVPIEDMPYMKNGRS 1038 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VD+++NPLGVPSRMN+GQ+LETH+G+A+ + + + A+ +D Sbjct: 1039 VDVIVNPLGVPSRMNVGQLLETHIGLASIAL--------EARSNTAEHLLCSSAYHDAMC 1090 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK---------LGDL 1204 D + + R + P FDG EAEI+ + + L Sbjct: 1091 HGLMACDGRCYPACSAAGGSPGHRVTLCTLCPAFDGPSEAEIRSMARAAATQGVRFKHGL 1150 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 Q LYDGRTG Q++RPVTVG+MY LKLNHL +K+H+RSTG YSLVT+QPLGGKA+ Sbjct: 1151 HRRHQAILYDGRTGTQYDRPVTVGFMYYLKLNHLARNKVHSRSTGPYSLVTEQPLGGKAR 1210 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 GGQR GEMEVWALEA+GAA+TLQEMLT+KSDDV GR +++ +I + G PES Sbjct: 1211 SGGQRVGEMEVWALEAHGAAFTLQEMLTIKSDDVGGRRRVHDHIAQDVRPLSYGTPESIG 1270 Query: 1325 VLLKEIRSLGINI 1337 +L++E+RSL +++ Sbjct: 1271 LLVRELRSLCVDV 1283 >UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY37_9BACL Length = 1267 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 438/1028 (42%), Positives = 621/1028 (60%), Gaps = 74/1028 (7%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M K R R+ + + +V+D+P L+ IQ S+ KF+E GL+ F+ V PI+ Sbjct: 1 MQKVKFGKHRQRRSYARISEVIDLPDLIEIQTLSYDKFLE------TGLKDVFKDVSPIE 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 + L+++ Y+LG P +DV E + R TYSAPLRV++RL+ ER+ +IKEQ Sbjct: 55 GNNDKLSLEFIDYKLGTPKYDVDESKERDATYSAPLRVRVRLINKERD-------EIKEQ 107 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MGE+PLMT+ GTF+ING ERVIVSQL RSP V+F D + Y +IP R Sbjct: 108 EVFMGELPLMTETGTFIINGAERVIVSQLVRSPSVYFTEDDKLKVKNIPNAYKTTVIPNR 167 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF--------E 231 G+WL+FE D K ++ RIDR RK+P T ++RAL + + E I+ LF E Sbjct: 168 GAWLEFEKDIKGLVYARIDRTRKIPLTTLIRALGFESDESIIKLFGEDTELLNTLEKDEN 227 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPV 289 + + + GE A+ + + + R A+ R + + + Sbjct: 228 LDTGTALKVIYDKLRPGEPANVETAKATLHGRFFDPRRYDLAKVGRYKLNNKLHV----G 283 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 E + +++ + +D TGE++ +L+ +++ + + + + + Sbjct: 284 ERLENQILVEPIVDTETGEILVEKGTKLTREIIDGIYEELGTTANVVEFDMNE------- 336 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 +D ++ L +I ++ G + D L +G N+ + Sbjct: 337 --SLDGSDSLKLQLFKIVNQVKVGNDYDID----------ELTDDQVLHVIGNGAPNKDV 384 Query: 410 LREEIEGSGILSKDDIIDVMKK---LIDIRNGK--------GEVDDIDHLGNRRIRSVGE 458 L L+ DI+ + LI R G VDDIDHLGNRR+R +GE Sbjct: 385 L--------TLTIADIVASINYYLLLIRTRRNNDGFEFELIGRVDDIDHLGNRRLRCIGE 436 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQ RVG+ R+ER V+ER+S+ D + + PQ +IN +P++A +KEFFGSSQLSQFMDQ Sbjct: 437 LLQNQIRVGISRMERVVRERMSIQDTNEITPQQLINVRPVTAIIKEFFGSSQLSQFMDQV 496 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLSE+THKRR+SALGPGGLTRERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS + Sbjct: 497 NPLSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSF 556 Query: 579 AQTNEYGFLETPYRKVTDG-----VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 A+ NE+GF+ TPYRKV VT+ + YL+A +E YV+AQ+ +N+DE+G+FV++ Sbjct: 557 ARINEFGFIMTPYRKVEFDGEGRPYVTENVQYLTADQEDKYVVAQSTANVDEKGYFVDEE 616 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 V CR +G++++ R+ +++MDVS +QVVS + IPFLE+DD+NRALMGANMQRQAVP + Sbjct: 617 VVCRFRGDNTVKPREMMNFMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLM 676 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG-EAGIDIYN 752 + P VGTGME A DSG +AK G+V+YVD ++I ++ E + +D Y Sbjct: 677 ITEAPFVGTGMEHLAARDSGAAVIAKYPGIVEYVDGAKIKVRRIETLEGKEIKGDLDTYV 736 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 + K+ RSN +T NQ P V +G+ VE D+LADGPS D GELALG+N+ VAF+ W+GYN+ Sbjct: 737 IHKFVRSNHSTAYNQKPIVKVGDRVEPKDILADGPSMDKGELALGKNLVVAFVNWDGYNY 796 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 ED++++SER+V++D +T+IH++E +RDTKLGPEEIT +IPNVGE AL LD GI+ Sbjct: 797 EDAVIMSERLVKDDVYTSIHVEEYETDARDTKLGPEEITREIPNVGENALRNLDARGIIR 856 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 IGAEV GDILVGKVTPKG T+ TPEEKLL AIFG K+ +V+D+SLRVP+G G V DV+ Sbjct: 857 IGAEVKDGDILVGKVTPKGLTEQTPEEKLLYAIFGAKSKEVRDTSLRVPHGADGVVADVK 916 Query: 933 VFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 +F R DG E E+ + + Q +K + G I +L + D Sbjct: 917 IFKREDGAELPNGVNELVRVFIVQKRKIRVGDKMAGRHGNKGVISNILPEEDMPY-LPDG 975 Query: 992 LPRDRWLE 999 P D L Sbjct: 976 TPVDVMLN 983 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 296/1190 (24%), Positives = 468/1190 (39%), Gaps = 184/1190 (15%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K EI++ ++ M +P L ET +F I +V V + R + + + +K VK Sbjct: 96 LINKERDEIKEQEVFMGELP--LMTETGTFIINGAERVIVSQLVRSPSVYFTEDDKLKVK 153 Query: 284 LIEVP--VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 I I + ++ + G + + + L + G + E++ Sbjct: 154 NIPNAYKTTVIPNRGAWLEFEKDIKGLVYARIDRTRKIPLTTLIRALGFESDESII-KLF 212 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 + TL D D +AL IY +RPGEP E A++ FF RYDL+ VG Sbjct: 213 GEDTELLNTLEKDENLDTGTALKVIYDKLRPGEPANVETAKATLHGRFFDPRRYDLAKVG 272 Query: 402 RMKFNRSLLREEIEGSGILSK-------------------DDIIDVMKKLIDIRNGKGEV 442 R K N L E + IL + +IID + + + E Sbjct: 273 RYKLNNKLHVGERLENQILVEPIVDTETGEILVEKGTKLTREIIDGIYEELGTTANVVEF 332 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK-------ERLSLGDLDTLMPQDMINA 495 D N + + ++ L ++ VK + L+ + ++ N Sbjct: 333 D-----MNESLDGSDSL-----KLQLFKIVNQVKVGNDYDIDELTDDQVLHVIGNGAPNK 382 Query: 496 KPISAAVKEFFGSSQLSQFMDQN------------NPLSEITHK--RRISALGPGGLTRE 541 ++ + + S + + + +I H RR+ +G + Sbjct: 383 DVLTLTIADIVASINYYLLLIRTRRNNDGFEFELIGRVDDIDHLGNRRLRCIGELLQNQI 442 Query: 542 RAGFE-----VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 R G VR+ R+ +T E LIN V A E+ + Sbjct: 443 RVGISRMERVVRE-------RMSIQDTNEITPQQLINVRPVTAIIKEF------FGSSQL 489 Query: 597 GVVTDEIHYLSAIEEGNYV--IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 D+++ LS + + + + G V D+ + + + + Sbjct: 490 SQFMDQVNPLSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGL 549 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 +++ S A + F R + R P + + + E V Sbjct: 550 INSL---SSFARINEFGFIMTPYRKVEFDGEGR---PYVTENVQYLTADQEDKYVVAQST 603 Query: 715 TAVAKRGGVVQ------YVDASRIVIKVNEDEMYPG-----EAGIDIYNLTKYTRSNQNT 763 V ++G V + + + + + M A + SN+ Sbjct: 604 ANVDEKGYFVDEEVVCRFRGDNTVKPREMMNFMDVSPKQVVSAATACIPFLENDDSNRAL 663 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 M ++ + A T + LA + + G +V Sbjct: 664 MGANMQRQAVPLMITE----APFVGTGMEHLAARDSGAAVIAKYPG------------IV 707 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 + I ++ + + G + V + ++ IV +G V DIL Sbjct: 708 EYVDGAKIKVRRIETLEGKEIKGDLDTYVIHKFVRSNHSTAYNQKPIVKVGDRVEPKDIL 767 Query: 884 V-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 G KGE L L+ A + +D+ + +S ++ V+T VE+ Sbjct: 768 ADGPSMDKGELALGK--NLVVAFVNWDGYNYEDAVI-----MSERLVKDDVYTSIHVEEY 820 Query: 943 ----------KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + E + + + I+ G + +LV ++ Sbjct: 821 ETDARDTKLGPEEITREIPNVGENALRNLDARGIIRIGAEVKDGDILVGKVTPKGLTEQT 880 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 P ++ L + K+ + L + + K+ K G +L GV ++V+V Sbjct: 881 PEEKLLYAIFGAKSKEVRDTSLRVPHGADGVVADVKIF----KREDGAELPNGVNELVRV 936 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 ++ KR+I+ GDKMAGRHGNKGVIS I P EDMPY +GTPVD++LNPLGVPSRMNI Sbjct: 937 FIVQKRKIRVGDKMAGRHGNKGVISNILPEEDMPYLPDGTPVDVMLNPLGVPSRMNI--- 993 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 G + L + Sbjct: 994 ------------GQVLELHLGMAAKQL--------------------------------- 1008 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 G+ +ATPVFDGA + ++ + + + LYDGRTGE F+ V+VG MYM Sbjct: 1009 ------GIHVATPVFDGATDEDVWSTVAEAGMAKDAKTVLYDGRTGEPFDSRVSVGVMYM 1062 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +KL H+VDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LT Sbjct: 1063 IKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILT 1122 Query: 1293 VKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 KSDD NGR K Y+ IV G + PG+PESF VL+KE+++LG++ + D Sbjct: 1123 YKSDDTNGRVKTYEAIVKGENIPRPGVPESFRVLMKELQALGMDFRVMDN 1172 >UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Tax=Bacteria RepID=RPOB_LEUCK Length = 1204 Score = 838 bits (2164), Expect = 0.0, Method: Composition-based stats. Identities = 441/1011 (43%), Positives = 599/1011 (59%), Gaps = 85/1011 (8%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K R R+ + +VLDVP L+ IQ S+Q F+++ G++ F + PI + G Sbjct: 10 KHRTRRSYASIKEVLDVPNLIEIQTASYQWFLDE------GIKEMFGDIMPIDDFQGTLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+YV Y+L EP +++ E + YSAPL V LRL +E +IK Q+V+ GE Sbjct: 64 LEYVDYQLMEPKYNIDEAREHDANYSAPLHVTLRLTNHE-------TGEIKSQDVFFGEF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT+ GTF+ING ERVIVSQL RSPG++++ + K +G+ Y +IP RG+WL++E Sbjct: 117 PLMTEQGTFIINGAERVIVSQLVRSPGIYYNQENDK---NGRPRYGTTVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFE--------------KVIFEI 232 D K VRIDR RKL T ++RAL + + I+D+F + K + + Sbjct: 174 TDAKGIANVRIDRTRKLLMTELVRALGFGSDSDIIDIFSDQYDALNMTLEKDVHKDMSDS 233 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPVE 290 R + ++ GE + D V + + R A R + L Sbjct: 234 RVEEALKDVYERLRPGEPKTADSSRALLVARFFDPKRYDLASVGRYKINKKLSL----KT 289 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 + + +A+ D +GE+I + +++KLS E Sbjct: 290 RLLNQTLAETLADPDSGEVIAEKGTLVDKTVMSKLSPFLD-----------------RED 332 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + A++E EP T + + E+ E L G Sbjct: 333 FKTTTYTPSGDAVLE--------EPVTLQKIK--IESPENPEKTLLLIGNG--------- 373 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 E + DI+ M ++++ G G VDDIDHLGNRRIRSVGE+ +NQFR+GL R Sbjct: 374 -HIDENDRTVRPADILAGMNYFLNLQEGIGNVDDIDHLGNRRIRSVGELLQNQFRIGLTR 432 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 +ER V+ER+S+ D +T+ PQ +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+ HKRR+ Sbjct: 433 MERVVRERMSIQDANTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQTNPLGEMNHKRRL 492 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 SALGPGGLTR+RAG EVRDVH THYGR+ PIETPEGPNIGLINSL+ Y + N+YGF+ETP Sbjct: 493 SALGPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGLINSLATYGRINKYGFIETP 552 Query: 591 YRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 YR+V +VTD+I YL+A EE NY++AQANS L+++G FV D V R E+ D Sbjct: 553 YRRVDWTTHMVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVHDTVMARFGEENIETPID 612 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 ++DYMDVS +QVVSVG + IPFLE+DD+NRALMGANMQRQAVP L PLVGTG+E Sbjct: 613 RIDYMDVSPKQVVSVGTAAIPFLENDDSNRALMGANMQRQAVPLLDPHAPLVGTGIEYKA 672 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 A DSGV +++ GVV+YVD +I ++ + ++ D Y L K+ RSN NQ Sbjct: 673 AHDSGVAMISRAAGVVEYVDGRQIRVRREDGQL-------DTYELMKFRRSNGGKNYNQK 725 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 P V GE VE +VLADGPS + GELALGQN +AFM W GYNFED+I+++ER+V+ED + Sbjct: 726 PIVHEGEHVEADEVLADGPSMEKGELALGQNPLIAFMTWQGYNFEDAIVLNERLVREDVY 785 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 T+IHI+E +RDTKLGPEE+T +IPN GE L LD GI+ +GAEV GDILVGKVT Sbjct: 786 TSIHIEEYDSEARDTKLGPEEMTREIPNTGEDQLKDLDADGIIRVGAEVHDGDILVGKVT 845 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALE 947 PKG T+L+ EE+LL AIFGEKA +V+D+SLRVP+G G V +V+++T +G E Sbjct: 846 PKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGVVQNVRIYTPENGDELAPGVNM 905 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + + + Q +K + G + V+ + D P D L Sbjct: 906 MVRVYIAQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPY-MPDGTPIDILL 955 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 268/1165 (23%), Positives = 445/1165 (38%), Gaps = 163/1165 (13%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 EI+ + P L E +F I +V V + R + Q + Sbjct: 98 LTNHETGEIKSQDVFFGEFP--LMTEQGTFIINGAERVIVSQLVRSPGIYYNQENDKNG- 154 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 I + +Y ++ G + L + + G + D Sbjct: 155 RPRYGTTVIPNRGAWLEYETDAKGIANVRIDRTRKLLMTELVRALGFGSDSDIIDIFSDQ 214 Query: 344 GPYISETLRVD-----PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 ++ TL D + AL ++Y +RPGEP T +++ +L FF RYDL+ Sbjct: 215 YDALNMTLEKDVHKDMSDSRVEEALKDVYERLRPGEPKTADSSRALLVARFFDPKRYDLA 274 Query: 399 AVGRM----KFNRSLLREEIEGSGILSKDDIIDVMKKL-----IDIRNGKGEVDDIDHLG 449 +VGR K + + L+ D +V+ + + + D + Sbjct: 275 SVGRYKINKKLSLKTRLLNQTLAETLADPDSGEVIAEKGTLVDKTVMSKLSPFLDREDFK 334 Query: 450 NRRIRSVGEMAEN----QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEF 505 G+ ++ + E K L +G+ + I A + F Sbjct: 335 TTTYTPSGDAVLEEPVTLQKIKIESPENPEKTLLLIGNGHIDENDRTVRPADILAGMNYF 394 Query: 506 FGSSQLSQFMDQNNPLSEITHK--RRISALGP--GGLTRERAGFEVRDVHPTHYGRVCPI 561 + + +I H RRI ++G R R V Sbjct: 395 LN------LQEGIGNVDDIDHLGNRRIRSVGELLQNQFRIGLTRMERVVR---------- 438 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV-----I 616 E +I N+++ N + ++ + + + E N+ + Sbjct: 439 ---ERMSIQDANTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQTNPLGEMNHKRRLSAL 495 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF-LEHDD 675 D G V D+ + + + + +++ + + + Sbjct: 496 GPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGLINSL---ATYGRINKYGFIETP 552 Query: 676 ANRALMGANM--QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 R +M + T + + + D + + I Sbjct: 553 YRRVDWTTHMVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVHDTVMARFGEENIETPID 612 Query: 734 IKVNEDEMYPGEAGIDI--YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 D + + SN+ M ++ L D + + Sbjct: 613 RIDYMDVSPKQVVSVGTAAIPFLENDDSNRALMGANMQRQAV--------PLLDPHAPLV 664 Query: 792 G---ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 G E + VA ++S + +++ D +L Sbjct: 665 GTGIEYKAAHDSGVA-------------MISRAA---GVVEYVDGRQIRVRREDGQLDTY 708 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFG 907 E+ + G ++ IV+ G V ++L G KGE L + L A Sbjct: 709 ELMKFRRSNGGKNYNQKP---IVHEGEHVEADEVLADGPSMEKGELAL--GQNPLIAFMT 763 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS------ 961 + + +D+ + ++ ++ V+T +E+ ++ ++ +++ Sbjct: 764 WQGYNFEDAIV-----LNERLVREDVYTSIHIEEYDSEARDTKLGPEEMTREIPNTGEDQ 818 Query: 962 ----EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 + I+ G +LV + +R L ++ ++ + L Sbjct: 819 LKDLDADGIIRVGAEVHDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVP 878 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + + GD+LAPGV +V+VY+A KR+IQ GDKMAGRHGNKG +S Sbjct: 879 HGGGG----VVQNVRIYTPENGDELAPGVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVS 934 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 + P EDMPY +GTP+DI+L+P+GVPSRMNI G + L + Sbjct: 935 VVVPEEDMPYMPDGTPIDILLSPMGVPSRMNI---------------GQVLELHLGFAAK 979 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 + G+ +A+PVFDGA + EI+ Sbjct: 980 ---------------------------------------KLGIHVASPVFDGASDDEIEA 1000 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L+ LP G+ +YDGRTGE F++ V VG M+ +KL H+VDDK+HARS G YSLVTQQ Sbjct: 1001 ALREAGLPQDGKSVVYDGRTGEAFDKRVGVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQ 1060 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LT KSDDV GR K+Y++I+ G P Sbjct: 1061 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDVAGRVKVYESIIKGEPIPRP 1120 Query: 1318 GMPESFNVLLKEIRSLGINIELEDE 1342 G+PESF VL+KE+++LG+++++ D Sbjct: 1121 GVPESFRVLVKELQALGLDMQVLDN 1145 >UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax=Borrelia RepID=RPOB_BORHD Length = 1155 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 457/1051 (43%), Positives = 650/1051 (61%), Gaps = 68/1051 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD------PEGQYGLEAAFRSVFPIQSY 62 KR+ GK ++LD+P L+ IQL+S++KF++ + P GLE+ FR VFP++S Sbjct: 3 KRVHLGQGKAEEILDLPNLIEIQLNSYEKFLQLERLKTNRPLLNEGLESVFRDVFPMKSS 62 Query: 63 SGNSELQYVSYRLGE--PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G L+Y Y + F +EC+ +G +Y A L+++L L T +I+++ Sbjct: 63 NGEVALEYEKYYIEYNSLSFTEKECKRKGQSYEAVLKIRLNLQFL-------TTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMTD GTF++NG ERVIVSQ+HRSPGV F + K LY ARIIPYR Sbjct: 116 DVYMGTIPLMTDRGTFIVNGAERVIVSQIHRSPGVVFYKE--------KDLYYARIIPYR 167 Query: 181 GSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D KD L+V+IDR++++ T+ LRAL T + I++ F++ E+ ++ Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILVTLFLRALGLNTRERIIETFYKIRKIEVNEDT-- 225 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + G+ + +I + G +IT + I ++ VK I++ +++ V Sbjct: 226 ----KREITGQYLATNIIIKENMTYRAGDKITLQDIEDFLQNGVKEIDL-IDFDGYDSVP 280 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + S L C + L + G K + Sbjct: 281 GKHFISSDVILNCFEKEDAYFSL-----KDGFKEL------------------------S 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R S ++ +Y ++ PGEP + + AES N+FFSE RYDL VGR K ++ +++ S Sbjct: 312 RESVMLAVYSVLLPGEPISIDNAESDLRNVFFSEKRYDLGHVGRYKLSKKFGLDDLTTS- 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DI++ + L+ I +G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMTDIVNTISHLLRIYDGHDVLDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ YA+ N+YGFLETPYRKV DG Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYAKVNDYGFLETPYRKVVDGK 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VTDEI YLSAI+E IAQAN+ ++ EG++++DL++ R G+ + +DYMDVS + Sbjct: 551 VTDEIEYLSAIDEEKKCIAQANAAVNAEGNYIDDLISVRVSGDYTTMIPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGMER VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGTGMERIVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G+V + +IVI+ + +D Y L KY R+NQ+T N V G+ V Sbjct: 671 KRSGIVVLATSKKIVIRPEDAADDHD---LDEYELAKYERTNQDTSFNHSVLVKEGQVVN 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +G+++ADGP+T GE+ALG N+ V F+PWNG+N+ED+IL+SER+++ED +T+IHI+E + Sbjct: 728 KGEIIADGPATRYGEVALGNNLLVGFIPWNGFNYEDAILISERIIKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++TADIPNV L+KLDE+GIV IG V GDIL+GKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTADIPNVSGKILNKLDENGIVRIGTYVKPGDILIGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV-EKDKRALEIEEMQLKQAK 957 KLL +IFGEKA DVK++SL+VP+G GTVIDVQ T+D V EI ++ + + + Sbjct: 848 FKLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKDDVSNLPPGVDEILKVYIAKKR 907 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 K + G + +L + D P D L L + N + + Q Sbjct: 908 KLKEGDKMAGRHGNKGVVAKILPVEDMPY-LADGTPLDICLN-PLGVPSRMNIGQLMESQ 965 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + + + + + + K Sbjct: 966 LGLAGKYLGEYYDVPVFESATNECIQEKLKK 996 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 260/1167 (22%), Positives = 427/1167 (36%), Gaps = 195/1167 (16%) Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 EIR + M +P L + +F + +V V + R + + I Sbjct: 111 EIRQKDVYMGTIP--LMTDRGTFIVNGAERVIVSQIHRSPGVVFYKEKDLYYARI----- 163 Query: 291 YIAGKVVAKDY-IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 I + ++ ID L + + + + L G E + Sbjct: 164 -IPYRGSWLEFEIDSKKDYLYVKIDRKKRILVTLFLRALGLNTRERIIETFYKIRKIEVN 222 Query: 350 TLRVDPTNDRLSALVEIYRM---MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + A I + R G+ T + E +N D D + Sbjct: 223 EDTKREITGQYLATNIIIKENMTYRAGDKITLQDIEDFLQNGVKEIDLIDFDGYDSVPGK 282 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN---- 462 + + I K+D +K + + + L + GE Sbjct: 283 HFISSDVILNCF--EKEDAYFSLKDGFKELSRESVM-----LAVYSVLLPGEPISIDNAE 335 Query: 463 ------QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD 516 F + + +LS + ++ I + + D Sbjct: 336 SDLRNVFFSEKRYDLGHVGRYKLSKKFGLDDLTTSVLTMTDIVNTISHLL------RIYD 389 Query: 517 QNNPLSEITHK--RRISALGP-------GGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 ++ L +I H RR+ ++G G ++R + R + Sbjct: 390 GHDVLDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDRMSNKE-------------- 435 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV-----IAQANSN 622 + +L + + ++ + ++ + E + + + Sbjct: 436 ----VFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGLS 491 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 D G V D+ + + + + + + + A + + + R ++ Sbjct: 492 RDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSL---ATYAKVNDYGFLETPYRKVVD 548 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 + + D+ A G V + I ++ ++ Sbjct: 549 GKVTDEIEYLSAIDEEKKCIAQANAAVNAEGNYIDDLISVRVSGDYTTMIPKNIDYMDVS 608 Query: 743 PGEAGIDIYNLTKYTRSN--------QNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 P + L + N N +P + P+ Sbjct: 609 PRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGT-------------- 654 Query: 795 ALGQNMRVAFMPWNGYNFEDS--ILVSERVVQEDRFTTIHIQE------LACVSRDTKLG 846 G VA +DS ++ ++R T+ I + +L Sbjct: 655 --GMERIVA---------KDSGVVVKAKRSGIVVLATSKKIVIRPEDAADDHDLDEYELA 703 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAI 905 E T + + +V G V G+I+ G T GE L LL Sbjct: 704 KYERTNQDTSFNHSV--------LVKEGQVVNKGEIIADGPATRYGEVAL--GNNLLVGF 753 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS---- 961 + +D+ L +S +I ++T +++ + ++ ++ D+ Sbjct: 754 IPWNGFNYEDAIL-----ISERIIKEDLYTSIHIKEFSIEVRETKLGPEKVTADIPNVSG 808 Query: 962 ------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 +E I+ G + + +L+ + D P + L ++ K + L Sbjct: 809 KILNKLDENGIVRIGTYVKPGDILIGKVTPKSEGDITPEFKLLTSIFGEKAKDVKNNSLK 868 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 + + + K +L PGV +I+KVY+A KR+++ GDKMAGRHGNKGV Sbjct: 869 VPHGTEGTVIDVQRITK----DDVSNLPPGVDEILKVYIAKKRKLKEGDKMAGRHGNKGV 924 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 ++KI P+EDMPY +GTP+DI LNPLGVPSRMNI G + + L Sbjct: 925 VAKILPVEDMPYLADGTPLDICLNPLGVPSRMNI---------------GQLMESQLGLA 969 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 + G PVF+ A I Sbjct: 970 GKYL---------------------------------------GEYYDVPVFESATNECI 990 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 +E LK + + LYDG TGE FE V VG +YMLKL+HLVDDKMHARSTG YSLV+ Sbjct: 991 QEKLKKAGFNETSKAVLYDGYTGEPFENEVMVGIIYMLKLHHLVDDKMHARSTGPYSLVS 1050 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQM 1315 QQPLGGKAQFGGQR GEMEVWALEAYGAA+TLQE+LTVKSDD++GR K+Y+NIV G Sbjct: 1051 QQPLGGKAQFGGQRLGEMEVWALEAYGAAHTLQELLTVKSDDMSGRVKIYENIVKGIPTN 1110 Query: 1316 EPGMPESFNVLLKEIRSLGINIELEDE 1342 G+PESFNVL++E+R LG ++ + D+ Sbjct: 1111 VSGIPESFNVLMQELRGLGFDLSIYDD 1137 >UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Tax=Spirochaetaceae RepID=RPOB_BORAP Length = 1155 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 454/1051 (43%), Positives = 651/1051 (61%), Gaps = 68/1051 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIE------QDPEGQYGLEAAFRSVFPIQSY 62 KR+ G+ ++LD+P L+ IQL+S++KF++ + P GLE+ FR++FPI+S Sbjct: 3 KRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKNKKPLLNEGLESVFRNIFPIKSG 62 Query: 63 SGNSELQYVSYRLGEPV--FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G+ L+Y Y + F +EC+ +G +Y A L+V+L L T +I+++ Sbjct: 63 NGDVALEYERYYIENDTLNFTEKECKRKGQSYEAVLKVRLNLQFL-------TTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMT+ GTF+ING ERVIVSQ+HRSPGV F + K LY+ARIIPYR Sbjct: 116 DVYMGTIPLMTERGTFIINGAERVIVSQIHRSPGVVFYKE--------KDLYSARIIPYR 167 Query: 181 GSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D KD L+V+IDR++++ T+ LRAL + T + I++ F+ ++ + Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILITLFLRALGFDTREKIIETFYNIKKIKVEEGT-- 225 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 L G+ + I +Y G +IT + + ++ V IE+ V++ V+ Sbjct: 226 ----KRDLPGQYLAKSINIRENMYYRAGDKITLQDVEDFLQNGVNEIEL-VDFDGYNDVS 280 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 Y S L C L + + G K + Sbjct: 281 GKYFVSSNVILNC-----LEKEDAFFALKDGSKELP------------------------ 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + S ++ +Y + PGEP + + AE+ + +FFSE RYDL VGR K ++ ++ + Sbjct: 312 KESVMLAVYGALFPGEPISIDNAENDLKTIFFSERRYDLGRVGRYKLSKKFGSDD-LSTS 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DDI++ + L+ I G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMDDIVNTISHLLRIYEGHDILDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ Y++ N+YGFLETPYRKV +G Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYSRVNDYGFLETPYRKVVNGE 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT+E+ YLSAI+E IAQAN+ + +G ++EDLV+ R G+ + + +DYMDVS + Sbjct: 551 VTNELEYLSAIDEEKKCIAQANAAFNSDGKYLEDLVSVRISGDYTTTNPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGME VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVGTGMESVVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G V +++IV+K E E +D Y++ KY R+NQ+TC NQ V G+ VE Sbjct: 671 KRSGEVILATSNKIVVKPFESENVKD---LDEYHIVKYERTNQDTCFNQSVLVKEGQKVE 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 RG+++ADGP+T GELALG N+ + +PWNG+N+ED+IL+S+R+V+ED +T+IHI+E + Sbjct: 728 RGEIIADGPATRYGELALGNNLLLGVIPWNGFNYEDAILISDRIVKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++T DIPNV E L+KLDE+GI+ IG V GDILVGKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTGDIPNVSEKILNKLDENGIIRIGTYVKPGDILVGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV-EKDKRALEIEEMQLKQAK 957 +LL +IFGEKA DVK++SL+VP+G GTVIDVQ T++ V EI ++ + + + Sbjct: 848 FRLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKEDVGNLSPGVEEILKVYVAKKR 907 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 K + G + +L + D P D L L + N + + Q Sbjct: 908 KLKEGDKMAGRHGNKGVVAKILPVEDMPY-LADGTPLDICLN-PLGVPSRMNIGQLMESQ 965 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + + + + + K Sbjct: 966 LGLAGKYLSESYNVPVFESATNEQIQEKLKK 996 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 258/1165 (22%), Positives = 440/1165 (37%), Gaps = 191/1165 (16%) Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 EIR + M +P L E +F I +V V + R + + Sbjct: 111 EIRQKDVYMGTIP--LMTERGTFIINGAERVIVSQIHRSPGVVFYKEKD------LYSAR 162 Query: 291 YIAGKVVAKDY-IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 I + ++ ID L + + + + L G E + + E Sbjct: 163 IIPYRGSWLEFEIDSKKDYLYVKIDRKKRILITLFLRALGFDTREKIIETFYNIKKIKVE 222 Query: 350 TLRVDPTNDRLSALVEIYRM---MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + A R R G+ T + E +N + D G + Sbjct: 223 EGTKRDLPGQYLAKSINIRENMYYRAGDKITLQDVEDFLQNGVNEIELVDFD--GYNDVS 280 Query: 407 RSLLREEIEGSGILSKDDIIDVMK---------KLIDIRNG---KGEVDDIDHLGNRRIR 454 L K+D +K ++ G GE ID+ N Sbjct: 281 GKYFVSSNVILNCLEKEDAFFALKDGSKELPKESVMLAVYGALFPGEPISIDNAEN---- 336 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 ++ F + R + +LS + ++ I + + Sbjct: 337 ---DLKTIFFSERRYDLGRVGRYKLSKKFGSDDLSTSVLTMDDIVNTISHLL------RI 387 Query: 515 MDQNNPLSEITHK--RRISALGP-------GGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 + ++ L +I H RR+ ++G G ++R + R + Sbjct: 388 YEGHDILDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDRMSNKE------------ 435 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV-----IAQAN 620 + +L + + ++ + ++ + E + + Sbjct: 436 ------VFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGG 489 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 + D G V D+ + + + + + + S + + + R + Sbjct: 490 LSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYS---RVNDYGFLETPYRKV 546 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 + + + D+ A G + + ++ + Sbjct: 547 VNGEVTNELEYLSAIDEEKKCIAQANAAFNSDGKYLEDLVSVRISGDYTTTNPKNIDYMD 606 Query: 741 MYPGEAGIDIYNLTKYTRSN--------QNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + P + L + N N +P + P+ Sbjct: 607 VSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVGT------------ 654 Query: 793 ELALGQNMRVAFMPWNGYNFEDS--ILVSERVVQEDRFTT--IHIQELACVSRDTKLGPE 848 G VA +DS ++ ++R + T+ I ++ + Sbjct: 655 ----GMESVVA---------KDSGVVVKAKRSGEVILATSNKIVVKPFESENVKDLDEYH 701 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFG 907 + + N + +V G +V G+I+ G T GE L LL + Sbjct: 702 IVKYERTNQDTCFNQSV----LVKEGQKVERGEIIADGPATRYGELALG--NNLLLGVIP 755 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS------ 961 + +D+ L ++ ++T +++ + ++ ++ D+ Sbjct: 756 WNGFNYEDAILISD-----RIVKEDLYTSIHIKEFSIEVRETKLGPEKVTGDIPNVSEKI 810 Query: 962 ----EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 +E I+ G + + +LV + D P R L ++ K + L Sbjct: 811 LNKLDENGIIRIGTYVKPGDILVGKVTPKSEGDITPEFRLLTSIFGEKAKDVKNNSLKVP 870 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + + + K +L+PGV +I+KVY+A KR+++ GDKMAGRHGNKGV++ Sbjct: 871 HGTEGTVIDVQRITK----EDVGNLSPGVEEILKVYVAKKRKLKEGDKMAGRHGNKGVVA 926 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 KI P+EDMPY +GTP+DI LNPLGVPSRMNIGQ++E+ LG+A K + + N + + Sbjct: 927 KILPVEDMPYLADGTPLDICLNPLGVPSRMNIGQLMESQLGLAGKYLSESYNVPVFESAT 986 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 +++E +++A F+ + + + Sbjct: 987 NEQIQEKLKKAG-------------------------------------FNPTSKEILYD 1009 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 G TGE FE V VG +YMLKL+HLVDDKMHARSTG YSLV+QQ Sbjct: 1010 -----------------GYTGEPFENEVMVGVIYMLKLHHLVDDKMHARSTGPYSLVSQQ 1052 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGKAQFGGQR GEMEVWALEAYGAA+TLQE+LTVKSDD++GR K+Y+NIV G Sbjct: 1053 PLGGKAQFGGQRLGEMEVWALEAYGAAHTLQELLTVKSDDMSGRVKIYENIVKGVPTNVS 1112 Query: 1318 GMPESFNVLLKEIRSLGINIELEDE 1342 G+PESFNVL++E+R LG+++ + D+ Sbjct: 1113 GIPESFNVLMQELRGLGLDLSIYDD 1137 >UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB9_THET1 Length = 1203 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 439/1066 (41%), Positives = 603/1066 (56%), Gaps = 166/1066 (15%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 K RK + + P +++P L+ IQLDSF F E+ GL+ F + P+ ++G Sbjct: 17 PASKVQRKSYARIPDTIEMPNLIQIQLDSFNWFKEE------GLQELFDEINPVVDFTGR 70 Query: 66 -SELQYVSY----RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 EL++ GEP + +EC+ R TYSAPL+VK L++ E +IKEQ Sbjct: 71 LMELRFDKPDSGQFFGEPRYTEKECRERDFTYSAPLKVKATLLVKE-------TGEIKEQ 123 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 E+++G+ PLMT+ GTFVING ERV+VSQL RSPGV+F +SGK L+ A++IP R Sbjct: 124 EIFLGDFPLMTEKGTFVINGAERVVVSQLVRSPGVYFKDVFD--EASGKTLWTAKLIPNR 181 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 G+WL+FE KD L+V++DR+RK+P T++LRA+ ++++ + ++ Sbjct: 182 GAWLEFETSNKDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVEAEGDMGPTTPGTDEWLWA 241 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 L + + +G+ + + A R K+ + + + ++ D Sbjct: 242 LYGK----------VSRDGRY-----QNLAATIERDPTKNSQEALV----ELYRRLRPGD 282 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + + L DP Sbjct: 283 PPNPEN-------------------------------------ARTLLRQLLFDP-RRYD 304 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 A V Y++ R E A S + +D R+ E + Sbjct: 305 LARVGRYKLTRKWEQLREVVARS-------NGPTFDFEIDSRV---------YGERLRTI 348 Query: 421 SKDDIIDVMKKLIDIRN----GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 + D+I+++ LI + N + E DDIDHLGNRR+R+VGE+ +NQFRVGL+R+ER +K Sbjct: 349 TGRDLINIVGNLIRLNNLPPGSEEEGDDIDHLGNRRVRAVGELIQNQFRVGLLRMERVIK 408 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+S+ D ++ P ++IN +P+ AA++EFFG SQLSQFMDQ N LSEI HKRR+SALGPG Sbjct: 409 ERMSIQDAESATPNNLINIRPVVAAMREFFGGSQLSQFMDQVNALSEINHKRRLSALGPG 468 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL+R+RAG +VRDVHP+HYGR+CPIETPEGPNIGLI L+ YA+ NEYGF+ETPYRKV Sbjct: 469 GLSRDRAGLDVRDVHPSHYGRICPIETPEGPNIGLIGQLATYARINEYGFIETPYRKVVK 528 Query: 597 GV-----------------------------------------------------VTDEI 603 V V +E+ Sbjct: 529 SVPGDSIDAMVGHITREPIMDSNGQEVVPVGTEITREVAEKIVALGLDEIKVKPRVLNEV 588 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR-----SKG--ESSLFSRDQVDYMDVS 656 YLSA E + +AQANS LDE G+F+ED V R +G E + D+VDY+D S Sbjct: 589 EYLSADREDLFTVAQANSPLDERGYFLEDRVEARASIRLRRGGTEFMIVPVDEVDYVDAS 648 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 +QVVSV +SLIPFLEHDDANRALMGANMQRQAVP L D P+VGTG+E VA DSG Sbjct: 649 PKQVVSVASSLIPFLEHDDANRALMGANMQRQAVPLLVPDSPVVGTGVEAQVARDSGQVV 708 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 +AK G+V+ V A RIV++ ++ + Y L K+ R+NQ+T +NQ P V+ G+ Sbjct: 709 IAKADGIVRSVTAERIVVEEDDGNL-------RTYELEKFVRTNQDTLLNQRPIVNKGDR 761 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 + G ++AD ST GE+ALGQN+ VAFMPW G NFED++L+SER+V++D +T+IHI++ Sbjct: 762 IYAGQIIADSASTSNGEIALGQNVLVAFMPWEGGNFEDAVLISERLVRDDVYTSIHIEKY 821 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 +RDTKLGPEEIT DIPNVGE AL+ LDE GIVY+GAEV DILVGKVTPKGET++T Sbjct: 822 EVEARDTKLGPEEITRDIPNVGEEALANLDERGIVYVGAEVKPNDILVGKVTPKGETEMT 881 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQ 955 EE+LLRAIF EKA DV+D+SLRVPNGV G VIDV+VFTR + + ++ + + Q Sbjct: 882 AEERLLRAIFSEKARDVRDTSLRVPNGVHGQVIDVKVFTRVENDDLPAGVNQMVRVMIAQ 941 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 +K + G I +L + D P D L Sbjct: 942 KRKISEGDKVAGRHGNKGVISRILPIEDMPF-LPDGRPVDVILNPI 986 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 378/1175 (32%), Positives = 559/1175 (47%), Gaps = 169/1175 (14%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K EI++ ++ + P L E +F I +V V + R + + + + Sbjct: 112 LLVKETGEIKEQEIFLGDFP--LMTEKGTFVINGAERVVVSQLVRSPGVYFKDVFDEASG 169 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL------- 336 + I + ++ + L + + + + L E + Sbjct: 170 KTLWTAKLIPNRGAWLEFETSNKDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVEAEGDMG 229 Query: 337 ---------------FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 + ++ T+ DPT + ALVE+YR +RPG+PP E A Sbjct: 230 PTTPGTDEWLWALYGKVSRDGRYQNLAATIERDPTKNSQEALVELYRRLRPGDPPNPENA 289 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSL--------------------LREEIEGSGILS 421 +L L F RYDL+ VGR K R R E ++ Sbjct: 290 RTLLRQLLFDPRRYDLARVGRYKLTRKWEQLREVVARSNGPTFDFEIDSRVYGERLRTIT 349 Query: 422 KDDIIDVMKKLIDIRN----GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 D+I+++ LI + N + E DDIDHLGNRR+R+VGE+ +NQFRVGL+R+ER +KE Sbjct: 350 GRDLINIVGNLIRLNNLPPGSEEEGDDIDHLGNRRVRAVGELIQNQFRVGLLRMERVIKE 409 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 R+S+ D ++ P ++IN +P+ AA++EFFG SQLSQFMDQ N LSEI HKRR+SALGPGG Sbjct: 410 RMSIQDAESATPNNLINIRPVVAAMREFFGGSQLSQFMDQVNALSEINHKRRLSALGPGG 469 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L+R+RAG +VRDVHP+HYGR+CPIETPEGPNIGLI L+ YA+ NEYGF+ETPYRKV Sbjct: 470 LSRDRAGLDVRDVHPSHYGRICPIETPEGPNIGLIGQLATYARINEYGFIETPYRKVVKS 529 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 V D I + ++ + G E + +++ + + Sbjct: 530 VPGDSIDAMVGHITREPIMDSNGQEVVPVGT------------EITREVAEKIVALGLDE 577 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +V + + +L D +A+ PL G V++ + Sbjct: 578 IKVKPRVLNEVEYLSADR-----------EDLFTVAQANSPLDERGYFLEDRVEARASIR 626 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 +RGG + V V+ + ++ +N+ M ++ V Sbjct: 627 LRRGGTEFMIVPVDEVDYVDASPKQVVSVASSLIPFLEHDDANRALMGANMQRQAVPLLV 686 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 D P G +VA +++++ + ++ + + Sbjct: 687 ------PDSPVVG-----TGVEAQVARDSGQ-------VVIAKA---DGIVRSVTAERIV 725 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 D L E+ V + L++ IV G + G I+ ++ Sbjct: 726 VEEDDGNLRTYELEKF---VRTNQDTLLNQRPIVNKGDRIYAGQIIAD-SASTSNGEIAL 781 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 + +L A + + +D+ L +S ++ V+T +EK + ++ ++ Sbjct: 782 GQNVLVAFMPWEGGNFEDAVL-----ISERLVRDDVYTSIHIEKYEVEARDTKLGPEEIT 836 Query: 958 KDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 +D+ +E I+ G + +LV + + +R L +++ + Sbjct: 837 RDIPNVGEEALANLDERGIVYVGAEVKPNDILVGKVTPKGETEMTAEERLLRAIFSEKAR 896 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 + L + K+ + DDL GV ++V+V +A KR+I GDK+A Sbjct: 897 DVRDTSLRVPNGVHGQVIDVKVFTRVE----NDDLPAGVNQMVRVMIAQKRKISEGDKVA 952 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 GRHGNKGVIS+I PIEDMP+ +G PVD++LNP+GVPSRMN+GQIL Sbjct: 953 GRHGNKGVISRILPIEDMPFLPDGRPVDVILNPIGVPSRMNLGQIL-------------- 998 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 L G +A PVF Sbjct: 999 -ECHLGWAASTL---------------------------------------GFKVACPVF 1018 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 DGA E IKE L+ LP G+I LYDGRTGE+F++PV VG MY++KL HLV+DK+HARS Sbjct: 1019 DGASEEMIKEELRRAGLPEDGKIELYDGRTGEKFDQPVAVGVMYIMKLAHLVEDKIHARS 1078 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 TG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD GR + Y+ Sbjct: 1079 TGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDTVGRVRTYEA 1138 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 IV G G+PESF VL+KE++SLG+++E+ +E Sbjct: 1139 IVKGEPISGAGVPESFKVLMKELQSLGLSVEVLNE 1173 >UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3X7_DESAS Length = 1227 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 422/1013 (41%), Positives = 588/1013 (58%), Gaps = 128/1013 (12%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MVY+ R R +FGK +VLD+P L+ +Q +S++ F++ GL F + PIQ Sbjct: 4 MVYAEKLGTRERLNFGKFKEVLDLPNLIEVQRNSYKWFLK------NGLREVFHDISPIQ 57 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 58 DFTGNLVLEFLDYTLGEPKYFVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 110 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+F + SGK L++A IIP R Sbjct: 111 EVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFAE---QIDPSGKKLFSATIIPNR 167 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI-------- 232 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y+++ ++ F + Sbjct: 168 GAWLEFETDVNDHVFVRIDRTRKIPATVLIRALGYSSDAMVMEEFGEDKNIQETLSRDNT 227 Query: 233 -RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + +E+ GE + + ++ + R A R ++ Sbjct: 228 GSEEDALVEIYKRLRPGEPPTVESARTLLETLFFDPKRYDLANVGRYKLHKKLQ------ 281 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 V Y +E +G + E L +I E Sbjct: 282 -----HGVLYRYPEEQSG---------------------KIEYDEILKQELPVEREFIRE 315 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 D + L + + +P R Y + + L Sbjct: 316 LTPKDILDTIKYLLRLVQGITEEKDPLGR-------------NIEYTVDDI------DHL 356 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 + G L ++ + ++ + + + D+D Sbjct: 357 GNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDVD----------------------- 393 Query: 470 RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 + PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR Sbjct: 394 ----------------VITPQVLINIRPVVASIKEFFGSSQLSQFMDQTNPLAELTHKRR 437 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ N++GF+ET Sbjct: 438 LSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARINQFGFIET 497 Query: 590 PYRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 PYR+V +VT+EI YL+A E +IAQAN+ L++EG F E V R E Sbjct: 498 PYRRVDKEKRIVTNEIEYLTADVEDRNIIAQANAPLNKEGFFTEQAVNARHGHEILKVPG 557 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 +++D+MDVS +QV S+ +LIPFLEHDDANRALMGANMQRQAVP ++A P+VGTG+E Sbjct: 558 EKIDFMDVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAVPLVKAQAPVVGTGVEYK 617 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 A DSGV +A++ G+V+ V A+ I+I+ ++ D + L K+TRSNQ TCINQ Sbjct: 618 AARDSGVVPLARKSGIVEKVTANDIMIRSDD-------GTSDYHKLLKFTRSNQGTCINQ 670 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V+ G+ V+ GD++ADGP+TD GELALG+N+ VAFMPW+GYN+ED+IL+SE+ V+ED Sbjct: 671 RPIVTKGQRVDEGDIIADGPATDNGELALGRNILVAFMPWDGYNYEDAILISEKAVKEDF 730 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI+E C +RDTKLGPEEIT DIPNVGE L LD+ GI+ +GAEV GDI+VGKV Sbjct: 731 FTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDIMVGKV 790 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRAL 946 TPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G +G ++DV+VF+RD G E Sbjct: 791 TPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFSRDNGDELPPGVN 850 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + + Q +K + G + ++ + D P + L Sbjct: 851 HLVRVYIAQKRKISVGDKMAGRHGNKGVVARIMPEEDMPF-LPDGTPIEIVLN 902 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 297/1148 (25%), Positives = 467/1148 (40%), Gaps = 184/1148 (16%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K E+++ ++ M P L E +F I +V V + R + + K Sbjct: 99 LINKETGEVKEQEVFMGDFP--LMTEKGTFIINGAERVIVSQLVRSPGVYFAEQIDPSGK 156 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + ++ + + + + + G+ + + + Sbjct: 157 KL-FSATIIPNRGAWLEFETDVNDHVFVRIDRTRKIPATVLIRALGYSS-DAMVMEEFGE 214 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 I ETL D T ALVEIY+ +RPGEPPT E+A +L E LFF RYDL+ VGR Sbjct: 215 DKNIQETLSRDNTGSEEDALVEIYKRLRPGEPPTVESARTLLETLFFDPKRYDLANVGRY 274 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 K + G+L + + ++GK E D+I + + E Sbjct: 275 KL------HKKLQHGVL---------YRYPEEQSGKIEYDEI---LKQELPVEREFIREL 316 Query: 464 ----FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNN 519 + + R V+ D + ++ + +L Q + Sbjct: 317 TPKDILDTIKYLLRLVQGITEEKDPLGRNIEYTVD-DIDHLGNRRLRSVGELLQNQFRIG 375 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 ++ R+ VR E I ++ ++ Sbjct: 376 ----LSRMERV----------------VR----------------ERMTIQDVDVITPQV 399 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV-----IAQANSNLDEEGHFVEDLV 634 N + + ++ + + + E + + + + G V D+ Sbjct: 400 LINIRPVVASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVH 459 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQ----QVVSVGASLIPFLEHDDANRALMG-----ANM 685 + + + + + + ++ G P+ D R + Sbjct: 460 HSHYGRMCPIETPEGPNIGLIGSLSTYARINQFGFIETPYRRVDKEKRIVTNEIEYLTAD 519 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 +A+ PL G A+ G + V +I ++ Sbjct: 520 VEDRNIIAQANAPLNKEGFFTE------QAVNARHGHEILKVPGEKIDF-MDVSPKQVFS 572 Query: 746 AGIDIYNLTKYTRSNQ-----NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 + ++ +N+ N +P V PV V + D G + L + Sbjct: 573 IATALIPFLEHDDANRALMGANMQRQAVPLVKAQAPVVGTGVEYK-AARDSGVVPLAR-- 629 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 +V++ I I+ S KL + N G Sbjct: 630 ------------------KSGIVEKVTANDIMIRSDDGTSDYHKL----LKFTRSNQGTC 667 Query: 861 ALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 +++ IV G V GDI+ G T GE L +L A + +D+ L Sbjct: 668 ----INQRPIVTKGQRVDEGDIIADGPATDNGELALGR--NILVAFMPWDGYNYEDAILI 721 Query: 920 VPNGVSG---TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE--ELQILEAGLFSR 974 V T I ++ + D + EI ++ L + + I+ G R Sbjct: 722 SEKAVKEDFFTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVR 781 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR 1034 ++V + + +R L ++ ++ + L + E + K+ ++ Sbjct: 782 PGDIMVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFSR-- 839 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 GD+L PGV +V+VY+A KR+I GDKMAGRHGNKGV+++I P EDMP+ +GTP+ Sbjct: 840 --DNGDELPPGVNHLVRVYIAQKRKISVGDKMAGRHGNKGVVARIMPEEDMPFLPDGTPI 897 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 +IVLNPLGVPSRMNIGQ+ + L Sbjct: 898 EIVLNPLGVPSRMNIGQV---------------LETHLGWAAR----------------- 925 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 + G ++TPVF+GA E++I E L+ DLP + + L+D Sbjct: 926 ----------------------KLGCYVSTPVFNGATESDILEFLRKADLPDTAKTTLHD 963 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 GRTGE F+ P+TVGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEME Sbjct: 964 GRTGEPFDNPITVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1023 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 VWALEAYG+AYTLQE+LTVKSDDV GR K Y+ IV G + EPG+PESF VL+KE++SLG Sbjct: 1024 VWALEAYGSAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLG 1083 Query: 1335 INIELEDE 1342 +++++ E Sbjct: 1084 LDVKVLSE 1091 >UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Tax=cellular organisms RepID=RPOB_SYNJB Length = 1139 Score = 766 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 372/807 (46%), Positives = 498/807 (61%), Gaps = 16/807 (1%) Query: 197 RIDRRRKLPATIILRALNYTTEQILDL-FFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 +I+R R P R Y + + K EI+D + + +P L + +F I Sbjct: 68 KINRPRYDPEEAKRRDATYQAQIRVPTRLINKETGEIKDMDVFIGELP--LMTDRGTFII 125 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 +V V + R + + + + I + + + G + + Sbjct: 126 NGAERVIVNQIVRSPGVYYKSELDKNGRRTY-SASLIPNRGAWLKFETDKNGLVWVRIDK 184 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 L L G E ++L H + +T+ + AL+E+YR +RPGEP Sbjct: 185 TRKLSAAVLLKALGLSDSEIY--DNLRHPEFFQKTMEKEGPYTEEEALMELYRKLRPGEP 242 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 PT + L E+ FF RYDL VGR K N+ L E +L+ DI+ V+ LI++ Sbjct: 243 PTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLNLNVAESVRVLTVTDILAVIDYLINL 302 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 G VDDIDHLGNRR+RSVGE+ +NQ RVGL R+ER ++ER+++ + + L P ++N Sbjct: 303 EYDIGHVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESENLTPASLVNP 362 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGL+RERAGF VRD+HP+HY Sbjct: 363 KPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFAVRDIHPSHY 422 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEGN 613 GR+CPIETPEGPN GLI SL+ +A+ N+YGF+E+PY +V +GVV ++ YL+A EE Sbjct: 423 GRICPIETPEGPNAGLIGSLATHARVNQYGFIESPYYRVENGVVRKDLGMVYLTADEEDE 482 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 Y +A + +D EG DLV R + E + +V Y+ V+ QV+SV SLIPFLEH Sbjct: 483 YRVAPGDVPVDAEGRITADLVPVRYRQEFTTAHPTEVHYVQVAPVQVISVATSLIPFLEH 542 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 DDANRALMGANMQRQAVP L+ D+P VGTG+E A DSG+ V++ GVV YV A IV Sbjct: 543 DDANRALMGANMQRQAVPLLKPDRPYVGTGLEAQAARDSGMVVVSRTNGVVTYVSADEIV 602 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE 793 ++ ++ +Y L KY RSNQ+TC+NQ P V G+ V G VLADGP+T+ GE Sbjct: 603 VRPDDG------GDPIVYRLQKYQRSNQDTCLNQRPLVYTGDRVVAGQVLADGPATEGGE 656 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD 853 LALGQN+ VA+MPW GYN+ED+IL+SER+V +D FT++HI++ +R TKLGPEEIT + Sbjct: 657 LALGQNVLVAYMPWEGYNYEDAILISERLVYDDVFTSVHIEKHEIEARQTKLGPEEITRE 716 Query: 854 IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 IPNVGE AL LDE+GIV IGA V GDILVGKVTPKGE+ PEE+LLRAIFGEKA DV Sbjct: 717 IPNVGEDALRDLDENGIVRIGAWVEAGDILVGKVTPKGESDQPPEERLLRAIFGEKARDV 776 Query: 914 KDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF 972 +D+SLRVPNG G V+DV++FTR+ G E A + + + +K + G Sbjct: 777 RDNSLRVPNGERGRVVDVRIFTREQGDELPPGANMVVRVYIALKRKIQVGDKIAGRHGNK 836 Query: 973 SRIRAVLVAGGVEAEKLDKLPRDRWLE 999 I +L + D P D L Sbjct: 837 GIISRILPIEDMPY-LADGTPVDVVLN 862 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 196/530 (36%), Positives = 280/530 (52%), Gaps = 59/530 (11%) Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 VV ++ V R G + + L++ +VY G V G Sbjct: 585 VVSRTNGVVTYVSADEIVVRPDDGGDPIVYRLQKYQRSNQDTCLNQRPLVYTGDRVVAGQ 644 Query: 882 ILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 +L G T GE L + +L A + + +D+ L +S ++ VFT +E Sbjct: 645 VLADGPATEGGELAL--GQNVLVAYMPWEGYNYEDAIL-----ISERLVYDDVFTSVHIE 697 Query: 941 KDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLD 990 K + ++ ++ +++ +E I+ G + +LV + D Sbjct: 698 KHEIEARQTKLGPEEITREIPNVGEDALRDLDENGIVRIGAWVEAGDILVGKVTPKGESD 757 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 + P +R L ++ + + L E + ++ + QGD+L PG +V Sbjct: 758 QPPEERLLRAIFGEKARDVRDNSLRVPNGERGRVVDVRIFTR----EQGDELPPGANMVV 813 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 +VY+A+KR+IQ GDK+AGRHGNKG+IS+I PIEDMPY +GTPVD+VLNPLGVPSRMN+G Sbjct: 814 RVYIALKRKIQVGDKIAGRHGNKGIISRILPIEDMPYLADGTPVDVVLNPLGVPSRMNVG 873 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 Q+ E LG AA+ +G + M D ++ S + E + Sbjct: 874 QVYECLLGWAAEHLGVRFKLMPF--------------------DEMHGLEASRLTVEAKL 913 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 R A+E K+ + + G+I+++DGRTGE F++PVTVG Sbjct: 914 R-----------------EAREKTGKDWIFNPEGKYCGKIQVFDGRTGEPFDQPVTVGRA 956 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQRFGEMEVWALEA+GAAY LQE+ Sbjct: 957 YMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYILQEL 1016 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LTVKSDD+ GR + IV G PG PESF VL++E++SL +++ + Sbjct: 1017 LTVKSDDMVGRNEALNAIVKGKPIPRPGTPESFKVLVRELQSLCLDVSVH 1066 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 104/360 (28%), Positives = 159/360 (44%), Gaps = 40/360 (11%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY----------VS 72 P L+ IQ +SF F+ + G E S PI Y+G EL + Sbjct: 13 TFPDLVEIQRESFLWFLRE------GFEEELLSFSPIIDYTGKLELHFLPEYRPGDPSKG 66 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 Y++ P +D +E + R TY A +RV RL+ E +IK+ +V++GE+PLMTD Sbjct: 67 YKINRPRYDPEEAKRRDATYQAQIRVPTRLINKE-------TGEIKDMDVFIGELPLMTD 119 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 GTF+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE D Sbjct: 120 RGTFIINGAERVIVNQIVRSPGVYYKSELDK---NGRRTYSASLIPNRGAWLKFETDKNG 176 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPE 244 ++VRID+ RKL A ++L+AL + +I D F+ + + MEL + Sbjct: 177 LVWVRIDKTRKLSAAVLLKALGLSDSEIYDNLRHPEFFQKTMEKEGPYTEEEALMELYRK 236 Query: 245 RLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 GE + + + R R R + L +V+ I Sbjct: 237 LRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLNLNVAESV----RVLTVTDI 292 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 LI +D + L + + L N + G E + + S Sbjct: 293 LAVIDYLINLEYDIGHVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESE 352 >UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 Tax=cellular organisms RepID=RPOB_ANASP Length = 1131 Score = 753 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 362/791 (45%), Positives = 491/791 (62%), Gaps = 21/791 (2%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K +I++ ++ + +P L + +F I +V V + R + + + + Sbjct: 101 LLNKETGDIKEQEVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKSEIDKNGR 158 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 I + + + + + L L G E + L H Sbjct: 159 RTY-SASLIPNRGAWLKFETDRNDLVWVRIDKTRKLSAQVLLKALGLSDNEIF--DALRH 215 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 Y +T+ + AL+E+YR +RPGEPPT + L ++ FF RYDL VGR Sbjct: 216 PEYFQKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGGQQLLDSRFFDPKRYDLGRVGRY 275 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 K N+ L + +L+ DI+ + LI++ G +DDIDHLGNRR+RSVGE+ +NQ Sbjct: 276 KLNKKLRLSVPDTVRVLTSGDILAAVDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQ 335 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 RVGL R+ER ++ER+++ D + L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E Sbjct: 336 VRVGLNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAE 395 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 +THKRR+SALGPGGLTRERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+ +A+ N+ Sbjct: 396 LTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNQ 455 Query: 584 YGFLETPYRKVTDGVV--TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 YGFLETP+R V +G V Y++A EE + +A + +DE G+ + V R + E Sbjct: 456 YGFLETPFRPVENGRVRFDQPAAYMTADEEDDLRVAPGDIPVDENGYIIGPQVPVRYRQE 515 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 S + +QVDY+ VS Q+VSV S+IPFLEHDDANRALMG+NMQRQAVP L+ ++PLVG Sbjct: 516 FSTTTPEQVDYVAVSPVQIVSVATSMIPFLEHDDANRALMGSNMQRQAVPLLKPERPLVG 575 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK------------VNEDEMYPGEAGID 749 TG+E A DSG+ V++ G V YVDA+ I ++ + ++ + Sbjct: 576 TGLEAQGARDSGMVIVSRTDGDVVYVDATEIRVRVSGQLPTASGKSTDNGQLTSQKGQEI 635 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y ++KY RSNQ+TC+NQ P V +GE V G VLADG ST+ GELALGQN+ VA+MPW G Sbjct: 636 RYTVSKYQRSNQDTCLNQKPLVRIGERVVAGQVLADGSSTEGGELALGQNIVVAYMPWEG 695 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YN+ED+IL+SER+VQ+D +T+IHI++ +R TKLGPEEIT +IPNVGE AL +LDE G Sbjct: 696 YNYEDAILISERLVQDDIYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRQLDEQG 755 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 I+ IGA V GDILVGKVTPKGE+ PEEKLLRAIFGEKA DV+D+SLRVPNG G V+ Sbjct: 756 IIRIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVV 815 Query: 930 DVQVFTRD-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 DV++FTR+ G E A + + + Q +K + G I +L + Sbjct: 816 DVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPIEDMPY-L 874 Query: 989 LDKLPRDRWLE 999 D P D L Sbjct: 875 PDGSPVDIVLN 885 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 120/437 (27%), Positives = 196/437 (44%), Gaps = 37/437 (8%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRL 75 +P L+ IQ SF+ F+E+ GL S PI Y+G EL ++ +Y+L Sbjct: 21 IEPAFLLPDLIEIQRSSFRWFLEE------GLIEELNSFSPITDYTGKLELHFLGHNYKL 74 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 EP + V+E + R TY+ + V RL+ E DIKEQEV++G++PLMTD GT Sbjct: 75 KEPKYSVEEAKRRDSTYAVQMYVPTRLLNKE-------TGDIKEQEVFIGDLPLMTDRGT 127 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE D D ++ Sbjct: 128 FIINGAERVIVNQIVRSPGVYYKSEIDK---NGRRTYSASLIPNRGAWLKFETDRNDLVW 184 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPERLR 247 VRID+ RKL A ++L+AL + +I D F+ + + MEL + Sbjct: 185 VRIDKTRKLSAQVLLKALGLSDNEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRP 244 Query: 248 GETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 GE + + + R R R ++L +V+ I + Sbjct: 245 GEPPTVLGGQQLLDSRFFDPKRYDLGRVGRYKLNKKLRLSVPDTV----RVLTSGDILAA 300 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 LI S+D + L + + L N + G E + + + ++ Sbjct: 301 VDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDAEVLT 360 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 ++ P P A + F + S+ + + + R L G G L+++ Sbjct: 361 PASLVNPK--PLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLS---ALGPGGLTRERA 415 Query: 426 IDVMKKLIDIRNGKGEV 442 ++ + G+ Sbjct: 416 GFAVRDIHPSHYGRICP 432 >UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNB1_9SYNE Length = 1150 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 365/869 (42%), Positives = 512/869 (58%), Gaps = 21/869 (2%) Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEIRDN 235 I L+ F KD R+ + + R Y+ + + K +I++ Sbjct: 63 ITDYTGKLELHFLGKDY---RLKAPKYMVDEAKRRDSTYSVQMYVPTRLINKETGDIKEQ 119 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ++ + +P L + +F I +V V + R + + + I + Sbjct: 120 EVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKAETDKHGRRTY-TANLIPNR 176 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 + + + + L L G E + L H Y +T+ + Sbjct: 177 GAWLKFETDKNDLVWVRIDKTRKLSAQVLLKALGLSDGEIF--DSLRHPEYFQKTIEKEG 234 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 AL+E+YR +RPGEPPT + L E+ FF RYDL VGR K NR L E Sbjct: 235 QFSEEEALLELYRKLRPGEPPTVNGGQQLLESRFFDPKRYDLGKVGRHKLNRKLRLNIPE 294 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + +L+ DI+ + LI++ G DDIDHLGNRR+RSVGE+ +NQ RVGL R+ER + Sbjct: 295 STRVLTPQDIVSAIDYLINLEFDIGNPDDIDHLGNRRVRSVGELLQNQVRVGLNRLERII 354 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 +ER+++ D D+L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THKRRISALGP Sbjct: 355 RERMTVSDADSLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGP 414 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGLTRERAGF VRD+HP+H+GR+CPIETPEGPN GLI SL+ +A+ N++GF+ETP+ V Sbjct: 415 GGLTRERAGFAVRDIHPSHHGRICPIETPEGPNAGLIGSLATHARVNDFGFIETPFFPVV 474 Query: 596 DGVVTDEI--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 +G + + Y++A EE + +A + +D + + + + V R + + ++ S +VDY+ Sbjct: 475 NGQIVKDKPAVYMTADEEDDLRVAPGDVPIDSDNNILGESVPVRYRQDFTVTSPKEVDYV 534 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 VS Q++SV SLIPFLEHDDANRALMG+NMQRQAVP LR ++ LVGTG+E A DSG Sbjct: 535 AVSPVQIISVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPERALVGTGLEAQAARDSG 594 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 + +++ GVV YVDA+ I + E +++ Y L KY RSNQ+TC+NQ P V Sbjct: 595 MVTISRTDGVVSYVDANWIKVTDLEGQVHS-------YELQKYQRSNQDTCLNQRPFVFE 647 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G V G V+ADG +T+ GE+ALGQN+ + +MPW GYN+ED+IL+SER+V ED +T+IHI Sbjct: 648 GTKVVAGQVMADGSATEGGEIALGQNVLITYMPWEGYNYEDAILLSERLVYEDVYTSIHI 707 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 ++ +R TKLGPEEIT +IPNVGE AL +LDE+GI+ +GA V+ GDILVGKVTPKGE+ Sbjct: 708 EKFEIEARQTKLGPEEITREIPNVGEDALRQLDETGIIRVGAWVSSGDILVGKVTPKGES 767 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRALEIEEMQ 952 PEEKLLRAIFGEKA DV+D+SLRVPNG G V+DV+VFTR+ G E A + + Sbjct: 768 DQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRVFTREQGDELPPGANMVVRVY 827 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 + Q +K + G I +L + D P D L L + N + Sbjct: 828 VAQKRKIQVGDKMAGRHGNKGIISRILPVEDMPY-LPDGTPIDIVLN-PLGVPSRMNVGQ 885 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 + + + G++ Sbjct: 886 VFEALLGWAGQNLDARFKVTPFDEMYGEE 914 Score = 415 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 181/487 (37%), Positives = 258/487 (52%), Gaps = 61/487 (12%) Query: 865 LDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 L++ V+ G +V G ++ G T GE L + +L + + +D+ L Sbjct: 639 LNQRPFVFEGTKVVAGQVMADGSATEGGEIAL--GQNVLITYMPWEGYNYEDAIL----- 691 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFS 973 +S ++ V+T +EK + ++ ++ +++ +E I+ G + Sbjct: 692 LSERLVYEDVYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRQLDETGIIRVGAWV 751 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 +LV + D+ P ++ L ++ + + L E + ++ + Sbjct: 752 SSGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRVFTR- 810 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 QGD+L PG +V+VY+A KR+IQ GDKMAGRHGNKG+IS+I P+EDMPY +GTP Sbjct: 811 ---EQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPVEDMPYLPDGTP 867 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 +DIVLNPLGVPSRMN+GQ+ E LG A + + + + + A Sbjct: 868 IDIVLNPLGVPSRMNVGQVFEALLGWAGQNLDARFKVTPFDEMYGEEASLETTHGKLQEA 927 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + D + + G+I+LY Sbjct: 928 RNQTGKD---------------------------------------WVFNPDNPGKIQLY 948 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGRTGE F++ VTVG YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQRFGEM Sbjct: 949 DGRTGEPFDQEVTVGQSYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEM 1008 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEA+GAAYTLQE+LTVKSDD+ GR + IV G PG PESF VL++E++SL Sbjct: 1009 EVWALEAFGAAYTLQELLTVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSL 1068 Query: 1334 GINIELE 1340 ++I + Sbjct: 1069 CLDIAVH 1075 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 158/344 (45%), Gaps = 32/344 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVFD 81 +P L+ IQ SF+ F+ GL S PI Y+G EL + YRL P + Sbjct: 34 LPDLVEIQRASFRWFL------GEGLVEELESFSPITDYTGKLELHFLGKDYRLKAPKYM 87 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 V E + R TYS + V RL+ E DIKEQEV++G++PLMTD GTF+ING Sbjct: 88 VDEAKRRDSTYSVQMYVPTRLINKE-------TGDIKEQEVFIGDLPLMTDRGTFIINGA 140 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERVIV+Q+ RSPGV++ ++ K G+ Y A +IP RG+WL FE D D ++VRID+ Sbjct: 141 ERVIVNQIVRSPGVYYKAETDK---HGRRTYTANLIPNRGAWLKFETDKNDLVWVRIDKT 197 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPERLRGETASF 253 RKL A ++L+AL + +I D F+ + + +EL + GE + Sbjct: 198 RKLSAQVLLKALGLSDGEIFDSLRHPEYFQKTIEKEGQFSEEEALLELYRKLRPGEPPTV 257 Query: 254 DIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + + R + R ++L + +D + + Sbjct: 258 NGGQQLLESRFFDPKRYDLGKVGRHKLNRKLRLNIPESTRVLT---PQDIVSAIDYLINL 314 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 ++ D + L + + L N + G E + + Sbjct: 315 EFDIGNPDD-IDHLGNRRVRSVGELLQNQVRVGLNRLERIIRER 357 >UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Tax=Bacteria RepID=RPOB_FRASC Length = 1141 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 375/782 (47%), Positives = 504/782 (64%), Gaps = 18/782 (2%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 F EI+ + M P L +F I +V V + R + + Sbjct: 115 FTNNNTGEIKSQTVFMGDFP--LMTPKGTFVINGTERVVVSQLVRSPGVYFERSLDKASD 172 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + ++ + + + + + L G L Sbjct: 173 KDLYSCKVIPSRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALGWDEARIL--ERFGD 230 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 P + TL D T + AL++IYR +RPGEPPTRE+A++L ENLFF+ RYDL+ VGR Sbjct: 231 FPSMRITLEKDHTAGQDDALLDIYRKLRPGEPPTRESAQTLLENLFFNPKRYDLAKVGRY 290 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG----KGEVDDIDHLGNRRIRSVGEM 459 K N+ L G+L+++DI+ ++ ++ + G + EVDDIDH GNRRIR+VGE+ Sbjct: 291 KVNKKLSLGVAHDVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDIDHFGNRRIRTVGEL 350 Query: 460 AENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNN 519 +NQ R+GL R+ER V+ER++ D++ + PQ +IN +P+ A++KEFFG+SQLSQFMDQ N Sbjct: 351 IQNQVRLGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQTN 410 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 PL+ +THKRR++ALGPGGL+RERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI SLS +A Sbjct: 411 PLAGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSTFA 470 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 + N +GF+ETPYRKV +G VT +I +L+A EE +V AQAN+ L +G F ED V R K Sbjct: 471 RVNPFGFIETPYRKVENGRVTGQIDWLTADEEDRHVKAQANTPLRPDGSFAEDRVLVRRK 530 Query: 640 -GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 GE D+VDYMDVS +Q+VSV ++IPFLEHDDANRALMG+NMQRQ+VP LR++ P Sbjct: 531 GGEVEFIPPDEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSNMQRQSVPLLRSEAP 590 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 LVGTGME A D+G V + GVV+ + A I + ++ Y L K+ R Sbjct: 591 LVGTGMEARAAKDAGDVVVCAQAGVVEDLSADYITVMHDD-------GTRRTYRLAKFRR 643 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 SNQ TCINQ P V+ G+ V G V+ADGP TD GE+ALG+N+ VAFMPW G+N+ED+I++ Sbjct: 644 SNQGTCINQKPIVNEGDRVGAGQVIADGPCTDNGEMALGKNLLVAFMPWEGHNYEDAIIL 703 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 S+R+VQ+D ++IHI+E +RDTKLGPEEIT DIPNV E L+ LDE GI+ IGAEV+ Sbjct: 704 SQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVAEEVLADLDERGIIRIGAEVS 763 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-D 937 GD+LVGKVTPKGET+LTPEE+LLRAIFGEKA +V+D+SL+VP+G SG VI V+VF+R D Sbjct: 764 PGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGVRVFSRED 823 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 G E E+ + + Q +K + G I +L A + + D P D Sbjct: 824 GDELPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVIAKILPAEDMPFLE-DGTPVDVV 882 Query: 998 LE 999 L Sbjct: 883 LN 884 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 230/749 (30%), Positives = 350/749 (46%), Gaps = 95/749 (12%) Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 + + + G V D+ + + + + + + S A + PF + Sbjct: 424 LGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSL---STFARVNPFGFIET 480 Query: 676 ANRALMGANMQRQAVPTLRADKPLV-----GTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 R + + Q ++ T + + V ++GG V+++ Sbjct: 481 PYRKVENGRVTGQIDWLTADEEDRHVKAQANTPLRPDGSFAEDRVLVRRKGGEVEFIPPD 540 Query: 731 RIVIKV-NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 + + +M + ++ +N+ + M P+ R + G Sbjct: 541 EVDYMDVSPRQMVSVATAM--IPFLEHDDANRALMGSNM--QRQSVPLLRSEAPLVGTGM 596 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 + ++ V ED + D T +H T+ Sbjct: 597 EARAAKDAGDVVVCAQAGV---VED--------LSADYITVMH-------DDGTRRTYRL 638 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGE 908 N G +++ IV G V G ++ G T GE L LL A Sbjct: 639 AKFRRSNQGTC----INQKPIVNEGDRVGAGQVIADGPCTDNGEMALGK--NLLVAFMPW 692 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS------- 961 + + +D+ + +S ++ V + +E+ + ++ ++ +D+ Sbjct: 693 EGHNYEDAII-----LSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVAEEVL 747 Query: 962 ---EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 +E I+ G VLV + + P +R L ++ ++ + L + Sbjct: 748 ADLDERGIIRIGAEVSPGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPH 807 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 E ++ ++ GD+L PGV ++V+VY+A KR+I GDK+AGRHGNKGVI+K Sbjct: 808 GESGKVIGVRVFSR----EDGDELPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVIAK 863 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I P EDMP+ E+GTPVD+VLNP GVP RMNIGQILETHLG AK G ++++ + +E Sbjct: 864 ILPAEDMPFLEDGTPVDVVLNPHGVPRRMNIGQILETHLGWVAK-TGWQVDSGTEDWKER 922 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 + A+ G +ATPVFDGA+E EI L Sbjct: 923 LRGI-----------------------------GADAASAGTNVATPVFDGAREEEITGL 953 Query: 1199 LKLGDLPTSG--------QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 L G + +L+DGRTGE + PV VGY+Y+LKL HLVDDK+HARSTG Sbjct: 954 LDSTLPNRDGIQLIGSSGKAKLFDGRTGEPYPYPVAVGYIYILKLLHLVDDKIHARSTGP 1013 Query: 1251 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 YS++TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT+KSDDV GR K+Y+ IV Sbjct: 1014 YSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVVGRVKVYEAIVK 1073 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 G + EPG+PESF VL+KE++SL +N+E+ Sbjct: 1074 GENIPEPGIPESFKVLIKEMQSLCLNVEV 1102 Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 166/348 (47%), Gaps = 38/348 (10%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFI----------------EQDPEGQYGLEAAFRSVFP 58 F K + L+VP LL++Q SF I D GLE F+ + P Sbjct: 12 FAKIIEPLEVPDLLALQTQSFDWLIGSDAWAERVQEAIDSGRDDVPITSGLEEVFKEISP 71 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I+ +SG+ L + +R P + V+EC+ + +T+SAPL V +IK Sbjct: 72 IEDFSGSMSLSFRDHRFEPPKYSVEECKDKDMTFSAPLFVTAEFTN-------NNTGEIK 124 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 Q V+MG+ PLMT GTFVINGTERV+VSQL RSPGV+F+ K +S K LY+ ++IP Sbjct: 125 SQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERSLDK--ASDKDLYSCKVIP 182 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK-- 236 RG+WL+FE D +D + VRIDR+R+ T++L+AL + +IL+ F + I K Sbjct: 183 SRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALGWDEARILERFGDFPSMRITLEKDH 242 Query: 237 ------LQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 +++ + GE + + ++ R A+ R + L Sbjct: 243 TAGQDDALLDIYRKLRPGEPPTRESAQTLLENLFFNPKRYDLAKVGRYKVNKKLSLGVAH 302 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 G + D + + A + + + + G++RI T+ Sbjct: 303 ---DVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDIDHFGNRRIRTV 347 >UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA polymerase beta subunit n=1 Tax=Hydra magnipapillata RepID=UPI00019270C2 Length = 1140 Score = 747 bits (1927), Expect = 0.0, Method: Composition-based stats. Identities = 452/776 (58%), Positives = 552/776 (71%), Gaps = 5/776 (0%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK-- 283 KV+ E+++ ++ M VP L SF I +V V + R + Sbjct: 118 NKVVKEVKEQEVYMGEVP--LMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSG 175 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + D+ + L + + + L G L LD Sbjct: 176 KLLFSARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFLDQ 235 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 G YIS+TLR D T D +A V IYRMMRPGEPPT +A ++LF+ LF++ D YDLS VGRM Sbjct: 236 GAYISQTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRM 295 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 KFN + R E G +L+ +DI+ V+K L+D+RNG+G+VDDIDHLGNRR+R VGE+AENQ Sbjct: 296 KFNAKMGRSESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAENQ 355 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 +R GL R+E+AVKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFM+Q NPL+E Sbjct: 356 YRTGLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMNQTNPLAE 415 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ITHKRR+SALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL++YA+ NE Sbjct: 416 ITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNE 475 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 YGF+ETPYR+V D VT+EI YLSAIEEG YVIAQAN+ LD+EG DLV+ R KGES Sbjct: 476 YGFIETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKEGTLTGDLVSAREKGESI 535 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 L S D+V YMDVS Q+VSV ASL+PFLEHDDANRALMGANM RQAVP LR +KP+VGTG Sbjct: 536 LVSADRVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTG 595 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 +ER AVDSG A RGG+V YVDA+R+VI+VN+ E GE G+DIYNL KY RSNQNT Sbjct: 596 IERVAAVDSGTVVTATRGGIVDYVDATRVVIRVNDAEAQAGEVGVDIYNLIKYQRSNQNT 655 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 I+Q P V G+ + +GDV+ADG STDLGE+A+GQNM VAFMPWNGYNFEDSIL+SERVV Sbjct: 656 NIHQRPIVKKGDKLSKGDVIADGASTDLGEIAIGQNMLVAFMPWNGYNFEDSILISERVV 715 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 EDR+T+IHI+EL ++RDTKLG EEIT DIPN+ E L++LDESGI+Y+GAEV GD L Sbjct: 716 AEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVLPGDTL 775 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 VGKVTPKGET LTPEEKLLRAIFGEKASDVKD+SLRV G SGTVIDVQVFTR+G E Sbjct: 776 VGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGDELPA 835 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 L++ ++ + ++ + G + + + D P D L Sbjct: 836 GVLKMVKVYIAVKRRLQPGDKMAGRHGNKGVVSKITPVEDMPY-LADGTPVDIVLN 890 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 233/492 (47%), Positives = 304/492 (61%), Gaps = 36/492 (7%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV G +++ GD++ G T GE + +L A + +DS L +S V Sbjct: 662 IVKKGDKLSKGDVIADGASTDLGEIA--IGQNMLVAFMPWNGYNFEDSIL-----ISERV 714 Query: 929 IDVQVFTRDGVE----------KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 + +T +E + + L + + + +E I+ G Sbjct: 715 VAEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVLPGDT 774 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + P ++ L ++ + L + ++ + Sbjct: 775 LVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTRE----- 829 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L GVLK+VKVY+AVKRR+QPGDKMAGRHGNKGV+SKI P+EDMPY +GTPVDIVL Sbjct: 830 GDELPAGVLKMVKVYIAVKRRLQPGDKMAGRHGNKGVVSKITPVEDMPYLADGTPVDIVL 889 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNIGQ+LE HLG A KG+G +I ML+++ ++R F+++ Y+ +K Sbjct: 890 NPLGVPSRMNIGQVLEVHLGWAGKGLGQRIGDMLQREAASTEIRGFLEQVYNST---GRK 946 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR------- 1211 DL+ SD EV +A+ L G+P A+PVFDGA E EI ++L+L + + Sbjct: 947 EDLAQLSDAEVQEMAKELTSGVPFASPVFDGATEKEIGDMLQLAYPDDVAKAKGLTATRT 1006 Query: 1212 ---LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 LYDGR+G+ FER TVGYM+ LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQ Sbjct: 1007 QAQLYDGRSGDAFERTTTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQ 1066 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLK 1328 RFGEMEVWALEAYGA+Y LQEMLTVKSDDV GRTK+Y+NIV G H +E GMPESFNVL+K Sbjct: 1067 RFGEMEVWALEAYGASYVLQEMLTVKSDDVQGRTKVYENIVKGEHSIEAGMPESFNVLVK 1126 Query: 1329 EIRSLGINIELE 1340 EIRSLGI+IEL+ Sbjct: 1127 EIRSLGIDIELD 1138 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 157/381 (41%), Positives = 218/381 (57%), Gaps = 23/381 (6%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSV 56 M Y+YTE+KRIRK+FG R VL++PYLL +Q D++ F++ D GL+AAF + Sbjct: 1 MAYTYTERKRIRKNFGSRDSVLEIPYLLQMQKDAYTAFLQADVGPKKRTNEGLQAAFEAA 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT--- 113 FPI S++G E++Y+ Y L +P FDV+ECQ RG+TY++ +R K++L+IY+RE+ G Sbjct: 61 FPIVSHNGFVEMKYLEYNLAKPAFDVRECQTRGLTYASAVRAKVQLIIYDRESSTGQNKV 120 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 VK++KEQEVYMGE+PLMT G+F+INGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ Sbjct: 121 VKEVKEQEVYMGEVPLMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 ARIIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ E IL FF I Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFLDQGAYIS 240 Query: 234 ----------DNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDD 281 + ++ + GE + D +++ +R R Sbjct: 241 QTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAK 300 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 + E V+ + I L+ N +D + L + + L N Sbjct: 301 MGRSESTGP----MVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAENQY 356 Query: 342 DHGPYISETLRVDPTNDRLSA 362 G E + Sbjct: 357 RTGLARIEKAVKERLGQAEQE 377 >UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 Tax=Bacteria RepID=RPOB_MYCLB Length = 1178 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 377/792 (47%), Positives = 506/792 (63%), Gaps = 28/792 (3%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 F EI+ + M P + E +F I +V V + R + + + Sbjct: 139 FINNNTGEIKSQTVFMGDFP--MMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTE 196 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 V+ I + ++ + + + + + L G + T Sbjct: 197 KTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQ--ITERFGF 254 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + TL D T AL++IYR +RPGEPPT+E+A++L ENLFF E RYDL+ VGR Sbjct: 255 SEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRY 314 Query: 404 KFNRSLLRE--EIEGSGILSKDDIIDVMKKLIDIRNGKG------------EVDDIDHLG 449 K N+ L E+ S L+++D++ ++ L+ + G+ E DDIDH G Sbjct: 315 KVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETDDIDHFG 374 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS 509 NRR+R+VGE+ +NQ RVG+ R+ER V+ER++ D++ + PQ +IN +P+ AA+KEFFG+S Sbjct: 375 NRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTS 434 Query: 510 QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 QLSQFMDQNNPLS +THKRR+SALGPGGL+RERAG EVRDVHP+HYGR+CPIETPEGPNI Sbjct: 435 QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNI 494 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 GLI SLSVYA+ N +GF+ETPYRKV DGVV+DEI YL+A EE +V+AQANS +DE G F Sbjct: 495 GLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPIDEAGRF 554 Query: 630 VEDLVTCRSK-GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 +E V R K GE + +VDYMDVS +Q+VSV ++IPFLEHDDANRALMGANMQRQ Sbjct: 555 LEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQ 614 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 AVP +R++ PLVGTGME A+D+G VA++ GV++ V A I + ++ Sbjct: 615 AVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMADD-------GTR 667 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 Y + K+ RSN TC NQ P V G+ VE G V+ADGP T+ GE+ALG+N+ VA MPW Sbjct: 668 RTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWE 727 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 G+N+ED+I++S R+V+ED T+IHI+E +RDTKLG EEIT DIPNV + L+ LDE Sbjct: 728 GHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDER 787 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 GIV IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEKA +V+D+SL+VP+G SG V Sbjct: 788 GIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKV 847 Query: 929 IDVQVFTRDGVEKDK-RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 I ++VF+ + ++ E+ + + Q +K + G I +L A + Sbjct: 848 IGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPF- 906 Query: 988 KLDKLPRDRWLE 999 D P D L Sbjct: 907 LPDGTPVDIILN 918 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 156/299 (52%), Gaps = 30/299 (10%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ-----------DPEGQYGLEAAFRS 55 R F K + L+VP LL +Q DSF+ I D + GLE Sbjct: 33 PGAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYE 92 Query: 56 VFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 + PI+ +SG+ L + R E V+EC+ + +TY+APL V + Sbjct: 93 LSPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFIN-------NNTG 145 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +IK Q V+MG+ P+MT+ GTF+INGTERV+VSQL RSPGV+FD K S+ K L++ + Sbjct: 146 EIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDK--STEKTLHSVK 203 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF----- 230 +IP RG+WL+F+ D +D + VRIDR+R+ P T++L+AL +T+EQI + F I Sbjct: 204 VIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLE 263 Query: 231 ---EIRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKL 284 + ++ +++ + GE + + ++ ++ R AR R + L Sbjct: 264 KDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL 322 >UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridia RepID=RPOB_CARHZ Length = 1132 Score = 742 bits (1914), Expect = 0.0, Method: Composition-based stats. Identities = 405/903 (44%), Positives = 543/903 (60%), Gaps = 50/903 (5%) Query: 201 RRKLPATIIL-RALNYTTEQILDL-FFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 + K R Y+ + + K EI++ ++ + P L E +F Sbjct: 70 KPKYSVEECKERDFTYSAPLRVKVRLLNKETGEIKEQEVFLGDFP--LMTEKGTFIFNGA 127 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 +V + + R + + + K + + I + ++ + + + Sbjct: 128 ERVVISQMVRSPGVYFSEQVDPNGKKMYL-ATIIPNRGAWLEFETDVNDHIYVRIDRTRK 186 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 L + L G++ + DH I TL D T+ R AL+EIY+ +RPGEPPT Sbjct: 187 LPVTVLLKALGYESKGRI-AELFDHDDKIIATLERDNTDSREEALIEIYKKLRPGEPPTV 245 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE------------------------I 414 E+A++L +++FF RYDL VGR K + L Sbjct: 246 ESAKTLLDSMFFDPKRYDLGNVGRYKLFKKLNHGVLYRYLEEDGEKEYDKYLNDYVPVKR 305 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 E L+ +DII ++ L+ + G+G+VDDIDHLGNRR+RSVGE+ +NQFR+GL R+ER Sbjct: 306 EFIRELTNEDIIYTIRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQNQFRIGLARMERV 365 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 V+ER+++ D D+L PQ +IN +PI AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALG Sbjct: 366 VRERMTIQDADSLTPQVLINTRPIVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALG 425 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ YA+ NE+GF+ETPYRKV Sbjct: 426 PGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGNLTTYARVNEFGFIETPYRKV 485 Query: 595 TD--GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 GVVT+EI YL+A EE Y+IAQAN L EG F++++V R E +VD+ Sbjct: 486 DKERGVVTNEIVYLTADEEEKYIIAQANVRLSPEGKFLDEMVNARHGSEILHVEPSKVDF 545 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 +DVS +QV SV SLIPFLEHDDANRALMGANMQRQAVP +R + P+VGTG+E A DS Sbjct: 546 VDVSPKQVFSVATSLIPFLEHDDANRALMGANMQRQAVPLIRTEAPVVGTGIEYKAAKDS 605 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 GV +AK GVV+ V A IVI+ ++ + ID Y L K+ RSNQ TCINQ P V Sbjct: 606 GVVVLAKNPGVVERVTADEIVIRNDQGQ-------IDRYKLIKFQRSNQGTCINQKPIVR 658 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 GE VE+ ++ADGPSTD GELALG+N+ VA+MPW GYN+ED+IL+SE++V+ED FT+IH Sbjct: 659 KGERVEKDQIIADGPSTDHGELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIH 718 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 I+E C +RDTKLGPEEIT DIPNVGE AL LDE GI+ IGAEV GDILVGKVTPKGE Sbjct: 719 IEEYECDARDTKLGPEEITRDIPNVGEDALKDLDERGIIRIGAEVRPGDILVGKVTPKGE 778 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEM 951 T+LT EE+LLRAIFGEKA +V+D+SLRVP+G SG V+DV+VF+R +G E + + Sbjct: 779 TELTAEERLLRAIFGEKAREVRDTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRV 838 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + Q +K + G + +L + D P + L L + N Sbjct: 839 YIAQKRKISVGDKMAGRHGNKGVVARILPEEDMPF-LPDGTPVEIVLN-PLGVPSRMNIG 896 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDL-----APGVLKIVKVYLAVKRRIQPGDKM 1066 + L + +D+ G+ + K+ + R G+ Sbjct: 897 QILECHLGWAAKALGINVATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRT---GEPF 953 Query: 1067 AGR 1069 R Sbjct: 954 DSR 956 >UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Tax=Bacteria RepID=RPOB_PELTS Length = 1224 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 401/804 (49%), Positives = 513/804 (63%), Gaps = 41/804 (5%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K E+++ + M P L E +F I +V V + R + + K Sbjct: 96 LINKETGEVKEQDVFMGDFP--LMTEKGTFIINGAERVIVSQLVRSPGVYFDETIDPSGK 153 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + ++ + + + + + G+ + + Sbjct: 154 KLY-TATIIPNRGAWLEFETDVNDHIFVRIDRTRKIPATVLVRALGYGTKAQV-AELFNE 211 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 I ETL D T+ ALVEIY+ +RPGEPPT ++A SL +LFF RYDL+ VGR Sbjct: 212 DKNILETLARDNTDSEEEALVEIYKRLRPGEPPTVDSARSLLTSLFFDPKRYDLANVGRY 271 Query: 404 KFNRSLLREE-------------------------IEGSGILSKDDIIDVMKKLIDIRNG 438 K + L E L+K+DII+ ++ L+ + NG Sbjct: 272 KIQKKLKHGVLYRYGPNPDGKTVFDPYLKKEVPQKREFIRELTKEDIIETIRYLLKLMNG 331 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPI 498 +G+VDDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V+ER+++ D+D + PQ +IN +P+ Sbjct: 332 EGQVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDVDVITPQVLINIRPV 391 Query: 499 SAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+ Sbjct: 392 VAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRM 451 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG--VVTDEIHYLSAIEEGNYVI 616 CPIETPEGPNIGLI SLS YA+ NE+GF+ETPYRKV VTDEI YL+A EE YVI Sbjct: 452 CPIETPEGPNIGLIGSLSTYARINEFGFIETPYRKVDKENRRVTDEIVYLTADEEEGYVI 511 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 AQAN+ LDEEG F+E V RS E + D+VDYMDVS +QV S+ +LIPFLEHDDA Sbjct: 512 AQANAPLDEEGRFIEPRVNARSP-EIVVVPADRVDYMDVSPKQVFSIATALIPFLEHDDA 570 Query: 677 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 NRALMGANMQRQAVP L+A PLVGTG+E A DSGV +AK G V+ V ++ I I+ Sbjct: 571 NRALMGANMQRQAVPLLKAQAPLVGTGIEYKAARDSGVVVIAKESGTVEKVTSTHIEIRN 630 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 + +D Y L K+TRSNQ TC+NQ P V GE VE G V+ADGPSTD GELAL Sbjct: 631 D-------RGYLDRYKLLKFTRSNQGTCVNQKPIVKKGERVEAGQVIADGPSTDYGELAL 683 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 G+N+ VAFMPW GYN+ED+ILVSE+ V+ED FT+IHI+E C +RDTKLGPEEIT DIPN Sbjct: 684 GRNVLVAFMPWEGYNYEDAILVSEKTVKEDYFTSIHIEEYECDARDTKLGPEEITRDIPN 743 Query: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS 916 VGE L LD+ GI+ +GAEV GDILVGKVTPKGET+LT EE+LLRAIFGEKA +V+D+ Sbjct: 744 VGEEILKDLDDRGIIRVGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDT 803 Query: 917 SLRVPNGVSGTVIDVQVFTRD-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 SLRVP+G SG V+DV+VF+RD G E ++ + + Q +K + G I Sbjct: 804 SLRVPHGESGKVVDVKVFSRDNGDELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVI 863 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLE 999 +L + D P + L Sbjct: 864 ARILPEEDMPF-LPDGTPIEIVLN 886 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 133/387 (34%), Positives = 200/387 (51%), Gaps = 48/387 (12%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M Y R+R +FG+ +VLD+P L+ +Q +S++ F+E+ GL F+ + PIQ Sbjct: 1 MAYPEKVGARVRYNFGRLREVLDLPNLIEVQRNSYKWFLEE------GLREVFQDISPIQ 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 55 DFTGNLVLEFLDYTLGEPKYTVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 107 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +V+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+FD SGK LY A IIP R Sbjct: 108 DVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFDET---IDPSGKKLYTATIIPNR 164 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVI---------FE 231 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y T+ + F + Sbjct: 165 GAWLEFETDVNDHIFVRIDRTRKIPATVLVRALGYGTKAQVAELFNEDKNILETLARDNT 224 Query: 232 IRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKL----- 284 + + +E+ GE + D + ++ + R A R + +K Sbjct: 225 DSEEEALVEIYKRLRPGEPPTVDSARSLLTSLFFDPKRYDLANVGRYKIQKKLKHGVLYR 284 Query: 285 ----------------IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 EVP + + + K+ I E+ L+ N E +D + L Sbjct: 285 YGPNPDGKTVFDPYLKKEVPQKREFIRELTKEDIIETIRYLLKLMNGEGQVDDIDHLGNR 344 Query: 329 GHKRIETLFTNDLDHGPYISETLRVDP 355 + + L N G E + + Sbjct: 345 RLRSVGELLQNQFRIGLSRMERVVRER 371 >UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax=Thermotogaceae RepID=RPOB_THEP1 Length = 1263 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 398/1132 (35%), Positives = 600/1132 (53%), Gaps = 101/1132 (8%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS------ 61 +R R FGK + L +P L+ IQ S+++F+E+ GL + PI S Sbjct: 7 GRRTRVSFGKTQEPLPIPDLVEIQKISYRRFLEE------GLLEVLKKFSPIYSQATRSD 60 Query: 62 ---YSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 L++VS R+GEPV D EC+ +G+TYS P+ RL + ++K Sbjct: 61 LKKSDRGFALEFVSTRIGEPVVDPLECKAKGLTYSVPIYATARLTDMKS-------GEMK 113 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 E+EV++G IP MTD GTF+ING ERV+V+Q+ SPG++F S+ + Y +P Sbjct: 114 EEEVFLGYIPYMTDRGTFIINGAERVVVNQIVVSPGLYFSSEYI-----DREEYGGYFLP 168 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 RG+WL+ DP D + +K+ + L+ + Y ++ + + + ++ L Sbjct: 169 SRGAWLEVILDPYDGVLYAGLDGKKVNLFLFLKTIGYEKDEDILSLYPTYLDADDEDSLL 228 Query: 239 ME----LVPERLRGET--------ASFDIEANGKVYVEKGR-RITARHIRQLEKDDVKLI 285 + L+ + G+ + D+ + + + +I + + ++L+ Sbjct: 229 LHVGSILLEDIYDGDRKIAEKWDILTKDLAERILMIDDINQIKIVHPIAQNTFEKMLELV 288 Query: 286 EVPVEYIAGKVVAKDYIDESTGEL---ICAANMELSLDLLAKLSQSG------------- 329 E + + + L + L +++ + Sbjct: 289 SSSGEEGEEEEEKTKIYGLNEVTVVDAYLEIFRRLRPEELPRINAAKRYLHDLFFNPERY 348 Query: 330 -HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM----MRPGEPPTREAAE-S 383 + N+ YI + V+ D A ++Y ++P + Sbjct: 349 DLSEVGRYKVNERLRNAYIRYLIEVEG-EDPEEARKKVYNENSLVLKPLDIVLASRILFD 407 Query: 384 LFENLF---FSEDRYDLSAVGRMKFN-------------RSLLREEIEGSGILSKDDIID 427 FE + F D Y+L + R+ R L+ G+ S ++ Sbjct: 408 YFERRYVNDFEIDSYELRNLIRIFKEEYLEKRKTASYDLRKLVSVFRRNYGVTSDLSVLA 467 Query: 428 VMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-LGDL 484 ++ + +I D DHLGN+R+R+VGE+ + +F R ++A++ERL+ + L Sbjct: 468 AIRYISNINKELPSIPFDTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLTLINSL 527 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 + Q +IN K I + V +FF +QLSQFMDQ NPLSE+THKRR+SA+GPGGL RE Sbjct: 528 SKVSIQSLINIKSIISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLRRESKV 587 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 FE R+VH + YGR+CPIETPEG NIG I SL++Y + +EYGFL TPYRKV +G VTDE+ Sbjct: 588 FEARNVHYSQYGRLCPIETPEGANIGFITSLAIYTKIDEYGFLMTPYRKVVNGKVTDEVV 647 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 YL A EE ++ I A + +DEEG+ + + V R + L R++VD+MDVST+Q SV Sbjct: 648 YLRANEEEDFKIVPATTPVDEEGNIIPERVVARVGEDIRLVPREEVDFMDVSTKQPFSVS 707 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 ASLIPFLEHDDA+RALMG+NMQRQAVP L+A+ P VGTGME A +SG +A+ G+V Sbjct: 708 ASLIPFLEHDDASRALMGSNMQRQAVPLLKAEAPFVGTGMEWEAAKNSGYVTLAEHDGIV 767 Query: 725 QYVDASRIVIKVNEDE---MYPGEAG--IDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 + VDA+RIV+ ++ MY + +D Y L K+ RSNQ+T INQ P V+ G+ V++ Sbjct: 768 KEVDAARIVVHRTDENGNLMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEGDFVKK 827 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 GD +ADGP+TD+GELALG+N+ VAFMPW GYN+ED+ILVS+ +++ED FT+IHI+ Sbjct: 828 GDPIADGPATDMGELALGRNILVAFMPWEGYNYEDAILVSQELLEEDVFTSIHIEVYETQ 887 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD------ILVGKVTPKGET 893 +R+T+LGPEEITADIPNV + L LDE+GI+ +GA V ILVGKVTPKGE Sbjct: 888 ARETRLGPEEITADIPNVSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVTPKGEG 947 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV-EKDKRALEIEEMQ 952 TPEEK++R++FGE+ DVKD+SLR+P+GV G VI V V+ ++ + E L++ + Sbjct: 948 DTTPEEKIIRSVFGERGRDVKDTSLRLPHGVEGRVIRVDVYDQNDIAELGAGVLKLVRVY 1007 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 + K + G + +L + D P L L + N + Sbjct: 1008 VASRKTLDIGDKLAGRHGNKGVVSNILPKEDMPF-LPDGTPVQMVLN-PLGIPSRMNVGQ 1065 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 L L K + + D++ + + KR + GD Sbjct: 1066 ILETHLGWLAKLTGKWFATPVFEGAKEDEILRPLYEE-----RKKRGLHLGD 1112 >UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Tax=Mollicutes RepID=RPOB_AYWBP Length = 1273 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 373/1076 (34%), Positives = 571/1076 (53%), Gaps = 105/1076 (9%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 KK R+++ K +D+P L+ IQ SF F++ G++ + PI+SY+G+ + Sbjct: 10 KKAQRRNYSKTIYDVDLPNLIEIQNQSFDWFLKH------GIKELLQDFCPIESYNGDLK 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + Y L P + ++E +I+ ++Y A L VK L + K+ + + E+ Sbjct: 64 IHFDDYFLTPPKYSIEETKIKDISYVAQLFVKTTL-------ENVLTGETKQSNILLTEL 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT GTF+INGTERV+VSQ+ RS V+F + + +Y+ ++IP RG+W+++E Sbjct: 117 PLMTSTGTFIINGTERVVVSQIVRSASVYFAGNFD--IKLNRTIYSGQVIPSRGAWIEYE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQ----------ILDLFFEKVIFEIRDNKL 237 K+ L+ ++DR +K+P + + AL + +++ ILD F+K ++ + Sbjct: 175 EGSKEILYAKLDRSKKIPLSNFIYALGFDSKEAIENVFGKSAILDSVFDKET-DMDSDNA 233 Query: 238 QMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +EL + +GE D + ++ + A+ R + ++ Sbjct: 234 LVELYSKIRQGEKVPVDTARDFIRTRLFDQKKYDLAKVGRYKFNKKLDVLTRAENT---- 289 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A D+++ E++ A + L+ + +A L Q+ H ++ +F + E + Sbjct: 290 YLACDFVNPENQEIMIAQDELLTKEKIAILKQNRHFLLQEIFDAKHNLENETDEEILAYK 349 Query: 356 TNDRLSALV-----------------------EIYRMMRPGEPPTREAAESLF------- 385 + + L +I +R E F Sbjct: 350 KYPQKNELFTKTNIINSRTGEVLVAKDTLVNDDIINHLRHNIHTLDEKVSKFFLGTKDIY 409 Query: 386 ------ENLFFSEDRYDLSAVGRMKFNRS---LLREEIEGSGILSKDDIIDVMKKLIDIR 436 + +F S K + ++ E ++ D+I + +++ Sbjct: 410 QKEADRQGVFNEILEVYTSKDESGKLYNKVKLIGNDQRETKKHITLSDVIASINYYLNLY 469 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM-PQDMINA 495 G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S + P D++N Sbjct: 470 ENVGTVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKNIKDMISTSKFGEVNGPGDLVNF 529 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 + + +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVRDVH +HY Sbjct: 530 TFLMSVIKTFFTNSRLSQFMDQINPLAELTQKRRVSALGIGGINRDRAGIEVRDVHNSHY 589 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT----DGVVTDEIHYLSAIEE 611 GR+CPIETPEGP+IGLI SLS YA+ N+YGF++TP+ KV ++ +I YL+A +E Sbjct: 590 GRLCPIETPEGPSIGLITSLSTYAKVNKYGFIQTPFFKVLQQDGKTTLSRDIDYLTADQE 649 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 +IA A LD F + + RS GE+ +F R+Q+ Y DVS +Q+VSV S IPFL Sbjct: 650 KEEIIASAGFVLDANNSFQDKKIIARSNGETGIFERNQITYADVSPKQIVSVATSSIPFL 709 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EH+DA+RALMGANMQRQAVP L + P+VGTG+E A DSG +A+ G V YVDA + Sbjct: 710 EHNDASRALMGANMQRQAVPLLIPESPIVGTGVEYRAAKDSGCLIIARESGFVTYVDAQK 769 Query: 732 IV--IKVNEDEMYPGEAGIDI-----------------------YNLTKYTRSNQNTCIN 766 I+ K N+ G+ D Y L + +SNQ+T + Sbjct: 770 IIITKKPNQTVSLNGKTLYDTTQEFTYTQAKVLYENNHKEYQAEYTLINFAKSNQDTLVL 829 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P V LGE + GD+L GPST GELALG+N+ VAFM W GYN+ED+I++SE +V+ D Sbjct: 830 QKPIVVLGEHINEGDILVSGPSTSQGELALGRNVTVAFMTWEGYNYEDAIIMSEELVKHD 889 Query: 827 RFTTIHIQELACVSRDTKL--GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 +T+IHI + +R+ K G EEIT ++PNVG A+ LDE GI+ G+EV GDILV Sbjct: 890 VYTSIHIDKYEVQTRELKKGSGQEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDILV 949 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDK 943 GK+TP+G + +P EKL++ + GEKA + KDSSLRVP G G V V F+R +G Sbjct: 950 GKITPQGNIEPSPSEKLIQIVIGEKAREYKDSSLRVPFGEGGIVQSVHYFSRKNGDVLPA 1009 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 E + + + +K + G I +L + D P D L Sbjct: 1010 GVNENIRVFIAKKRKINEGDKMAGRHGNKGVISRILPKEDLPY-MADGTPIDIMLN 1064 Score = 361 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 179/517 (34%), Positives = 266/517 (51%), Gaps = 82/517 (15%) Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQ 894 ++ + I N L K IV +G + GDILV G T +GE Sbjct: 803 YENNHKEYQAEYTLINFAKSNQDTLVLQK----PIVVLGEHINEGDILVSGPSTSQGELA 858 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA--------- 945 L + A + + +D+ + +S ++ V+T ++K + Sbjct: 859 LGR--NVTVAFMTWEGYNYEDAII-----MSEELVKHDVYTSIHIDKYEVQTRELKKGSG 911 Query: 946 ---LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + E + +E I+ G + +LV ++ P ++ +++ + Sbjct: 912 QEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDILVGKITPQGNIEPSPSEKLIQIVI 971 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 ++ ++ + L + E +++ GD L GV + ++V++A KR+I Sbjct: 972 GEKAREYKDSSLRVPFGEGGIVQSVHYFSRK----NGDVLPAGVNENIRVFIAKKRKINE 1027 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDKMAGRHGNKGVIS+I P ED+PY +GTP+DI+LNPLGVPSRMNI Sbjct: 1028 GDKMAGRHGNKGVISRILPKEDLPYMADGTPIDIMLNPLGVPSRMNI------------- 1074 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 G + L + + G+ + Sbjct: 1075 --GQILEIHLGMAAK---------------------------------------KLGIKV 1093 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 ATPVFDG + ++KE++K +L G++ LYDGRTGE ++ ++VG MYM+KL+H+VDDK Sbjct: 1094 ATPVFDGVNDYDLKEIMKEANLEPDGKMVLYDGRTGEPYDSRISVGVMYMVKLSHMVDDK 1153 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1302 +HAR+ G Y+LVTQQP+GGK Q GGQRFGEMEVWAL AYGAA+TLQE+LTVKSDD+ GR Sbjct: 1154 LHARNVGPYTLVTQQPMGGKVQNGGQRFGEMEVWALYAYGAAHTLQEILTVKSDDIVGRN 1213 Query: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 K Y IV G +P +PESF V +KE++SLG+ +EL Sbjct: 1214 KTYSAIVQGTQLPKPSIPESFRVFIKELQSLGLYVEL 1250 >UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Carsonella ruddii RepID=RPOB_CARRP Length = 1267 Score = 728 bits (1878), Expect = 0.0, Method: Composition-based stats. Identities = 404/1343 (30%), Positives = 690/1343 (51%), Gaps = 92/1343 (6%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY 62 + +++KK K ++PYLL Q+ S+ F+ + ++ + FP+ Sbjct: 10 FCFSKKKFFHK--------CNLPYLLHNQIGSYNSFLSSKYNSLFSIKKVLKQYFPLICN 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 + N ++ L EP + +IR + + L + + + + + +++ Sbjct: 62 NKNIFIKLKKIELLEPCNTEKYTKIRNLHLFSTLYMYISIYVINKNLNV-------YKKI 114 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 ++G IP MT G F+ING +R+++SQ +S G++F ++K K IIP +GS Sbjct: 115 FLGNIPSMTKKGNFIINGIDRILISQFTKSYGIYFYTEKKKKK--------CIIIPLKGS 166 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 WL+F +N + D++ + L L Y + + FF K+ +I K ++ + Sbjct: 167 WLEFII--TNNFLIVFDKKINFEINVFLICLGYNKKYFFNFFFFKIKIKIIRGKKRIFFL 224 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 + + K K I + ++ I GK+ K+Y Sbjct: 225 LNK----------------------------KKYFYKIYNKYICISIKKILGKLFGKNYF 256 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + L + ++ + + +F + + Y+ + Sbjct: 257 LKKNTFL---KFNIIDINKVNLILNYPIYFFFIIFLKKIINLNYLIYIYKNFKLKINKEL 313 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L + F F + +Y S +G + + L ++ I + Sbjct: 314 LQYKKGYIIN------------FFRNLFYKKKYFYSLIGAKRIFKRLFLKKNNKLTIYLE 361 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + +I+N D+ D+L N+ I + G++ +F +V + + +++ Sbjct: 362 IIKKILKFIKFNIQN-----DNFDNLENKLILNCGKLLSIKFDFLFKKVIKFINYKMNNF 416 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 ++N+ I+ +K++F +++LSQF+DQNNPL+EI+H R+IS + G+ +E Sbjct: 417 K-KYKDLDFIVNSDIITIGLKDYFCNNELSQFLDQNNPLAEISHNRKISLISGIGIEKEN 475 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 GF++RD+H +HY +VCPI+TPEG NIGLINSL+ ++ N+Y F+ T Y+ G + Sbjct: 476 CGFDIRDIHYSHYCKVCPIDTPEGHNIGLINSLAYLSKVNKYNFISTIYKISILGKILG- 534 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEG--HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 I +L + + I NS ++ F R +D +++ Q+ Sbjct: 535 ITFLDNKFDKHKFIVNFNSTIETIYGEIFRSPYFEARKTNYYYYKKFLNIDLIEICGDQI 594 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 +SVGASLIPFL H+DANR LMG+NMQRQAVP + ++ P+VGTG E + ++S ++ Sbjct: 595 ISVGASLIPFLSHNDANRCLMGSNMQRQAVPLIDSENPIVGTGNELEIGLNSNYNILSDL 654 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G V Y D +I+IK N I Y L KYTR+NQNT +NQ V G+ V+ G Sbjct: 655 NGYVLYSDNYKIIIKNNN--------FIKTYFLEKYTRTNQNTILNQYTKVLKGDFVKVG 706 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +++AD ST GE++LG+N+RVAFM W GYNFEDSIL+S ++ ++ F +IHI E V Sbjct: 707 NIIADSNSTKNGEISLGKNLRVAFMSWYGYNFEDSILLSSSILNKNNFNSIHIYEFITVL 766 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + + G E ++ + E +K+ ++GI+ IG V D++VGK+ PK + + +PEEK Sbjct: 767 KYNENGFEIVSNECFGSNEKIKNKV-KNGIIKIGEFVFSKDVIVGKMIPKKKRKFSPEEK 825 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 L + +F E + + L VP + GT+I V F K+K ++ QL K++ Sbjct: 826 LFKIVFSESNFNYYEQPLTVPKNIKGTIIAVNDFK-IFYFKNKIFKLLKFEQLNYTCKNI 884 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT----DEEKQNQLEQLAE 1016 + ++I+ +L + +K + + +++ +L Sbjct: 885 NNFFYETFNYYLTKIKKLLFNNKITIKKKRINSYNININNIFKIKCFNKKINFKLNIFKN 944 Query: 1017 QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVI 1076 + + K+ + DD +++I+K+ +AVK++I GDKM+GRHGNKGV+ Sbjct: 945 IISNELLKKKNIFVYKKINFIKHDDFENSIIRIIKIKIAVKKQIAIGDKMSGRHGNKGVV 1004 Query: 1077 SKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQ 1136 S I E+MPYD+ G +D++LNPLGVPSRMN+GQ+LE L + + +K Sbjct: 1005 SNIIDYENMPYDKFGNKIDLILNPLGVPSRMNVGQLLEVFLA-GSLNLIKSFFLKIKNLN 1063 Query: 1137 EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIK 1196 +++ + + + ++L+ F++ V+++ +N++ + + F ++ Sbjct: 1064 KISYFKMKLFIKIIFKCIYDKNINLNIFNNSLVLKIFKNIKNQLNVCVHNFYNFNVNKVN 1123 Query: 1197 ELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 ++K + + ++ L+DG TG+++ + V VGY+Y +KLNHLV DK+++RS G YS+VTQ Sbjct: 1124 NIIKTIGINKNCELLLFDGITGKRYLQLVNVGYIYFMKLNHLVIDKIYSRSIGPYSIVTQ 1183 Query: 1257 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME 1316 QPLGGK+ GGQR GEMEVWALEAYGAA+ L+EMLT+KSDD+ GR ++YKNI+ G + Sbjct: 1184 QPLGGKSNLGGQRLGEMEVWALEAYGAAFLLKEMLTIKSDDILGRIELYKNIIKGINDAN 1243 Query: 1317 PGMPESFNVLLKEIRSLGINIEL 1339 G+PESF VL+KEI+SL +I++ Sbjct: 1244 SGIPESFQVLMKEIQSLCFDIKI 1266 >UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax=Thermotogaceae RepID=RPOB_PETMO Length = 1187 Score = 723 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 384/1033 (37%), Positives = 575/1033 (55%), Gaps = 107/1033 (10%) Query: 8 KKRIRKDFGKRPQVLDV-PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ------ 60 +R RK FGK P+ ++ L+ IQ DSF+ F+++ + + + PI+ Sbjct: 9 GRRERKFFGKVPEKTEIYEDLVKIQKDSFRDFLDKK------IMESIKRYMPIKIPVKAS 62 Query: 61 -SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 + + +V + + F EC+ +G+TY+ +K+R+ T + I++ Sbjct: 63 GKKNKEFLIDFVDVKFEDSSFSENECRDKGLTYAGKAYLKVRIT------DSATGEMIEK 116 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 ++++ IP MT+ G F++NG ERVIV+QL RSPGV+F ++ S K ++ A +P Sbjct: 117 DDIFLCNIPYMTERGIFIVNGAERVIVNQLVRSPGVYFIKEEETDTS--KEMFIAHFLPI 174 Query: 180 RGSWLDFEFDP---KDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEIRDN 235 +G+WL+ ++P K+ L VRIDR+RK + LRAL Y + IL LF +++ + Sbjct: 175 KGAWLEILYNPNPGKEVLQVRIDRKRKFNFFLFLRALGYENDLDILRLFPKEIDLDDE-- 232 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 VE + L ++ ++ P + G Sbjct: 233 ---------------------------VELSNYNNCTVLSDLSFQELDDMDPPRKSTYGM 265 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 + ++L L + K + + + + Sbjct: 266 KLY---------------------EVLELLKKYEIKSVTVAHLVAEITLEKMKKRYEKEE 304 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL----- 410 L A EI+ ++P E P + A+ E+++F+ +++D S +GR K L Sbjct: 305 RLTSLEAYKEIFSKLKPTEIPRAQKAKEEIEDMYFNPEKFDFSQIGRQKIQVKLRKAYID 364 Query: 411 -----------------REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + + + K DII + L+ ++ +D DHLGN+R+ Sbjct: 365 YLREVEKKDISEDMEDKIKYPIKTFAVDKLDIILSARYLLHVKENIEGLDTRDHLGNKRV 424 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLS 512 RSVGE+ + +F ++ + E+L+ + ++ + PQ +IN++ I A +FF SSQLS Sbjct: 425 RSVGELMQIEFERAFSKMIQHAPEKLAGVQSINKISPQSLINSRSIMTAFHQFFASSQLS 484 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 QF+DQ NPL+E+THKRR+SA+GPGGL RE A FEVRDVH +HYGR+CPIETPEG NIGLI Sbjct: 485 QFLDQVNPLAELTHKRRLSAIGPGGLKREHAKFEVRDVHHSHYGRMCPIETPEGANIGLI 544 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVV-TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE 631 S+++ A+ +EYGFL+TPY +V V + I YLSA EE Y IA A++ + E+G VE Sbjct: 545 TSMAILAKVDEYGFLKTPYYRVKHAKVDLNNIVYLSADEEELYRIAPASAEIGEDGSLVE 604 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 + + R G+ SLF +D+++Y+ V+ +Q+ SV A+LIPFLEHDDANRALMG+NMQRQAVP Sbjct: 605 EYIEARYLGKVSLFHKDEIEYISVTPKQIASVSAALIPFLEHDDANRALMGSNMQRQAVP 664 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE-----MYPGEA 746 LR P VGTG+E A DSG +AK G+V YVD +IVI ++E E Sbjct: 665 LLRPQAPFVGTGVEWLAARDSGYLIMAKHKGIVDYVDGRKIVITRLDEENNVLKDSNDEP 724 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 D Y L KY RSNQ+ CINQ+P V++G+ V +G +ADGPS D+GELALG+N+ + F+P Sbjct: 725 LKDEYTLLKYVRSNQDMCINQVPIVNVGDVVTKGQAIADGPSMDMGELALGRNIFIGFLP 784 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 W GYNFED+I+VS+ +++ D FT+IHI+ + DT+LGPEEITADIPNV + L LD Sbjct: 785 WEGYNFEDAIVVSQELLENDAFTSIHIEVFETKAMDTQLGPEEITADIPNVKKELLRNLD 844 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 E GIV IG+ V+ GDILVGKVTP+GE+ TPEEKL++++FG+K D+KDSSL VP+G+ G Sbjct: 845 EEGIVKIGSYVSSGDILVGKVTPRGESDTTPEEKLIKSVFGDKGRDIKDSSLTVPHGIEG 904 Query: 927 TVIDVQVFTRDGVE-KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 VIDVQ+F R + + + ++ + K + G I +L + Sbjct: 905 RVIDVQIFDRKDIPSLEIGVNKYVKVFIATKKTLQVGDKLAGRHGNKGVISTILNKEDMP 964 Query: 986 AEKLDKLPRDRWL 998 D P L Sbjct: 965 F-LPDGTPLQMLL 976 >UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Tax=Embryophyta RepID=RPOB_GNEPA Length = 1108 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 359/1175 (30%), Positives = 558/1175 (47%), Gaps = 150/1175 (12%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 ++F FD + + + K + L ++++ + FF + + + +P Sbjct: 48 VEFLFDKNYKI-IEPSIKEKDAVY---QRLTFSSKLFVPAFFIYWNKIKKKKIIYLGEIP 103 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 L +F I N +V V + R + K + + G + + Sbjct: 104 --LMNNNGTFLINGNYRVVVNQLIRSPGIYYSLERKRTGNIYTSTLISDCGGRLKFEIDI 161 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRI--ETLFTNDLDHGPYISETLRVDPTNDRLS 361 + + + +S+ + + I T + + I + + Sbjct: 162 KQNIWIRISRKKNVSILVFFFAMGLDIEEILKNTYYIKGFEGWGLICNEKLKHKLSRKKG 221 Query: 362 ALV----EIYRMMRPGEPPTREAAESLFENLF--FSEDRYDLSAVGRMKFNRSLLREEIE 415 A+ E+ + E+ F F R L +GR N+ L E + Sbjct: 222 AIFTFYEELGSRGDNNDFVFSESLSESLYKKFTNFLSKRCKLGRIGRRNLNKKLNLEIPD 281 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 L D++ ++ LI + G G VD+IDHL NRR SV ++ + + + L RV+ + Sbjct: 282 NEIFLLPQDVLAIIDYLIKVSYGVGTVDNIDHLQNRRFFSVADLLKKEVGLALNRVKVLI 341 Query: 476 KERL-------SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 ++ + + ++P+ + + I+ +K FFG LSQF++Q N L+EI H R Sbjct: 342 QKTMQTIEMLRKKQNKRIMLPEIPLVSTQITKTLKHFFGLHPLSQFLEQTNSLAEILHAR 401 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 ++S LGPGGLT A F RD+HP++YGR CPI TPEG N GLI SL++ A+ N +GFLE Sbjct: 402 KVSFLGPGGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISARIN-FGFLE 460 Query: 589 TPYRKVTDG-VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV-TCRSKGESSLFS 646 +P+ V +I YLS E+ Y IA N L + E + E + Sbjct: 461 SPFYNVAKKYQKAKKIVYLSPSEDVYYRIALGN-CLSVDQKIPEKKNTPTQYHQEFLSIA 519 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 +Q+ + Q S+G SLIPFLEH+DA RALMG+NMQRQAVP+++ +K +VGTG+E Sbjct: 520 WEQIHFRCFLPLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKCIVGTGLEG 579 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 VA+DSG A++ + G +QY DA+ IV + + L Y RSN NT ++ Sbjct: 580 QVALDSGALAISTQEGRIQYSDAATIVSVL--------KGNTTQTELQIYQRSNSNTLMH 631 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q S + V +G +LADG + GE+ LG+N+ VA+MPW GYNFED+IL+SE ++ +D Sbjct: 632 QKTHASQAKYVRKGQILADGAAMLGGEICLGKNILVAYMPWQGYNFEDAILISECLIYKD 691 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 FT+ HI + E++T +IP + +L LD++G+V +G+ V GD+LVGK Sbjct: 692 IFTSFHITRYETTICTAE--CEKMTREIPRLATYSLRHLDKNGLVRVGSWVQPGDVLVGK 749 Query: 887 VTPKGETQLT--PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 + P+ + PE +LL+ +F +K++ LR G VIDV KD Sbjct: 750 LRPRSSEDFSRFPELRLLQDLFCTSP--IKETCLRA--NGKGRVIDVNWSKLQAFCKDD- 804 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 +E+ +D+ +E Sbjct: 805 ---LEKGHQDDDTEDIYDEA---------------------------------------- 821 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 E+ ++ QL E ++ R+IQ GD Sbjct: 822 EDALEKVYQLNNYNLSSDSEKVHVYLLEK------------------------RKIQVGD 857 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 K+AGRHGNKG++S + +DMP+ ++G +D+VLNPL VPSRMN+GQI E LG+A + Sbjct: 858 KVAGRHGNKGIVSIVLSRQDMPFLQSGISLDMVLNPLSVPSRMNVGQIFECLLGLAG-TM 916 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 ++ + + A + Sbjct: 917 NKHYRIPPFDERYEQEASRKLVFYELYKASEQTANP------------------------ 952 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 + +L G+ +++DGRTGE FE+PVT G Y+LKL H V+DKMH Sbjct: 953 ---------------WIFELEHLGKTQIFDGRTGEIFEQPVTTGNAYILKLIHQVNDKMH 997 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARSTG+Y+ +TQQP+ GK++ GGQR GEMEVWALE++G AY L+EMLTVK+D + R K+ Sbjct: 998 ARSTGNYARITQQPVQGKSKGGGQRLGEMEVWALESFGVAYVLREMLTVKADHIRARKKI 1057 Query: 1305 YKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINIE 1338 ++I+DG+ + ESF VL KE+ SL + + Sbjct: 1058 LRSILDGHSVPKADSATESFRVLSKELNSLALELN 1092 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 84/407 (20%), Positives = 157/407 (38%), Gaps = 36/407 (8%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY-VSY 73 F ++ ++ +P IQL+ F +FIE D L F I + E + +Y Sbjct: 3 FDEKKEMFTIPEFGQIQLEGFCRFIEYD------LLDKFVKFPKIANTQKEVEFLFDKNY 56 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 ++ EP ++ + +T+S+ L V + + + + + Y+GEIPLM +N Sbjct: 57 KIIEPSIKEKDAVYQRLTFSSKLFVPAFFIYWNKIKKKKII--------YLGEIPLMNNN 108 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GTF+ING RV+V+QL RSPG+++ ++ + +Y + +I G L FE D K N Sbjct: 109 GTFLINGNYRVVVNQLIRSPGIYYSLERKR----TGNIYTSTLISDCGGRLKFEIDIKQN 164 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE----IRDNKLQMELVPER---- 245 +++RI R++ + + A+ E+IL + FE I + KL+ +L ++ Sbjct: 165 IWIRISRKKNVSILVFFFAMGLDIEEILKNTYYIKGFEGWGLICNEKLKHKLSRKKGAIF 224 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 E + N V+ E + KL + + K + + D Sbjct: 225 TFYEELGSRGDNNDFVFSESLSESLYKKFTNFLSKRCKLGRIGRRNL-NKKLNLEIPD-- 281 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 E+ L++ G ++ + +++ L+ + V Sbjct: 282 -NEIFLLPQDVLAIIDYLIKVSYGVGTVDNIDHLQNRRFFSVADLLKKEVGLALNRVKVL 340 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 I + M T E + +S Sbjct: 341 IQKTM-----QTIEMLRKKQNKRIMLPEIPLVSTQITKTLKHFFGLH 382 >UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Phytoplasma RepID=RPOB_PHYAS Length = 1240 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 366/1037 (35%), Positives = 562/1037 (54%), Gaps = 85/1037 (8%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 KK R+++ K +D+P L+ IQ SF F++ G+E + PI+SY+G+ + Sbjct: 10 KKVERRNYSKIIYDVDLPNLIEIQNKSFNWFLKD------GIEELLQDFCPIESYNGDLK 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + P + V+E + + +Y L VK L + K+ V + E+ Sbjct: 64 IYFGECYSTGPKYSVEESKTKDASYVIQLFVKATL-------ENTLTGETKKSSVLLTEL 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PL+TD GTF+ING ERV VSQ+ RS K LY+ ++IP RG+W+++E Sbjct: 117 PLITDTGTFIINGKERVAVSQIVRS--SSVYYSSTFDVKLNKNLYSGQVIPARGAWIEYE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF---------EIRDNKLQ 238 K+ L+V++DR +K+P + + AL + +I++ F K ++ Sbjct: 175 EGSKEILYVKLDRSKKIPLSNFIYALGFNNREIIEKVFGKSPLLNSSFVKEEDMDTGNAL 234 Query: 239 MELVPERLRGETASFDIEAN---GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +EL + +GE D + +++ +K +T + K L Y+ Sbjct: 235 IELYSKIRQGEKVPVDTARDFIRKRLFDQKKYDLTTVGRYKFNKKLDVLARAEKTYLV-- 292 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE---TLR 352 D+++ T E+I + L+ D + L ++ H ++ LF + E T + Sbjct: 293 ---HDFVNLETKEIILPKHTFLTKDKIEILRKNRHFLLQELFDAQHNLENETDEEILTYK 349 Query: 353 VDPTNDRLSALV--------------------EIYRMMRPGEPPTREAAESLFEN----- 387 DP + L E+ + +R F Sbjct: 350 KDPQSRELYIKTNILNFRTGEIIFPKDTLVTDEVIKRLRKSIQLLDGKVIEFFLRSKDVY 409 Query: 388 --------LFFSEDRYDLSAVGRMKFNRSL---LREEIEGSGILSKDDIIDVMKKLIDIR 436 +F LS + + E ++ DII + +++ Sbjct: 410 QKDLERTGVFNEILEVYLSKDEHDNLQHKVQIVGNNQKETKKHITLSDIIASISYYLNLY 469 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 G G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S+ + P +++N Sbjct: 470 EGIGNVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKHIKDMISVSKFSEVGPGELVNFG 529 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 ++ +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVRDVH +HYG Sbjct: 530 FLNGVIKTFFANSRLSQFMDQINPLAELTQKRRVSALGVGGINRDRAGVEVRDVHNSHYG 589 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD----GVVTDEIHYLSAIEEG 612 R+CPIETPEGP+IGLI SL++YA+ ++YGF++TP+ KV V+++I YL+A +E Sbjct: 590 RLCPIETPEGPSIGLIASLAIYAKVDDYGFIQTPFFKVFVQNGASYVSNQIEYLTADQEK 649 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 +IA + L+ + F +D V R GE ++ ++QV Y D+S +Q+VS+ + IPFLE Sbjct: 650 EEIIASSGYELNSDATFQKDKVIARKNGEIGIYPKEQVTYADISPKQIVSIATASIPFLE 709 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 H+D++RALMG+NMQRQAVP L + P+VGTG+E A DSG +A + G+V YVDA +I Sbjct: 710 HNDSSRALMGSNMQRQAVPLLVTESPIVGTGIEYRAAKDSGSLIIASQPGIVTYVDAKKI 769 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 V E Y LT + +SNQ+T I Q P VSLG+ +++GD+L DGPST+ G Sbjct: 770 VT-------SDQEGNKKEYQLTTFEKSNQDTLILQKPIVSLGDNIQKGDILVDGPSTNQG 822 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP--EEI 850 ELALG+N+ VAFM W GYN+ED+I++SE +V+ D +T++HI + + +R+ K G EEI Sbjct: 823 ELALGRNILVAFMTWEGYNYEDAIIISEELVKNDVYTSVHINKYSVQTRELKKGSGKEEI 882 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 T ++PNVG A+ LDE GI+ G+EV GDILVGK+TP+G TP+EKL++ + GEKA Sbjct: 883 TREVPNVGADAIKNLDERGIIIPGSEVKEGDILVGKITPQGNVDPTPQEKLIQIVIGEKA 942 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEA 969 + KDSSLRVP G G V VQ F+R +G E + + + +K + Sbjct: 943 REYKDSSLRVPYGEGGIVQSVQYFSRKNGDILPPGVNENIRVFIAKKRKISEGDKMAGRH 1002 Query: 970 GLFSRIRAVLVAGGVEA 986 G I +L + Sbjct: 1003 GNKGVISRILPKEDLPF 1019 >UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax=Bacteria RepID=RPOB_ROSS1 Length = 1229 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 393/1182 (33%), Positives = 565/1182 (47%), Gaps = 182/1182 (15%) Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 E++++++ + P L E +F I +V V + R + ++ + + Sbjct: 123 ELKESEIFLGDFP--LMTENGTFVINGAERVVVSQLIRSPGVYFKEEKDPTSGRSLHSAK 180 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS---------------------- 328 I + ++ + + + + + L Sbjct: 181 LIPSRGAWLEFETNKRDVISVKVDRKRKIPVTILLRAVLGWRANPDGSGQWAPDNELDQR 240 Query: 329 -GHKRIETLFTN-DLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFE 386 + I LF + + YI TL DP AL+E+Y+ +RPG+PPT + A +L E Sbjct: 241 GRDEEILELFAHLETGDHQYIKATLDKDPARHAKEALLELYKRLRPGDPPTLDNARNLIE 300 Query: 387 NLFFSEDRYDLSAVGRMKFNRSLLREEIE----------GSGILSKDDIIDVMKKLIDIR 436 L F+ RYDLS VGR K N++L ++ +L DDI +++++I + Sbjct: 301 ALLFNPRRYDLSRVGRYKLNKNLWEKDTRPEVRRQAPDVKVRVLLPDDIFKIVERMIQLN 360 Query: 437 NGK--GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 NG DDIDHLGNRR+R+VGE+ + QFRVGL+R+ER +KER+SL D +T P ++N Sbjct: 361 NGTPGLRADDIDHLGNRRVRTVGELIQQQFRVGLLRMERVIKERMSLQDPETATPNALVN 420 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 +P+ AA++EFFG +QLSQFMDQ NPL+E+THKRR+SALGPGGL+R+RAGFEVRDVH +H Sbjct: 421 IRPVVAAMREFFGGAQLSQFMDQTNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHHSH 480 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 YGR+CP+ETPEGPNIGLI ++S YA+ NE GFLETPYRKV Sbjct: 481 YGRICPVETPEGPNIGLIGTMSTYARVNEMGFLETPYRKVYRE----------------- 523 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 S + +G + D+ R GE +VD V + ++ D Sbjct: 524 --VPNASEWERQGLLLRDVRDLR-TGELIAVRGTRVDAAVARRIAVALLRGQILREDVVD 580 Query: 675 DANRALMGANMQRQAV-----------------PTLRADKPLVGTGMERAVAVDSGVTAV 717 ++ Q P + + + E + + Sbjct: 581 PTTGEVIAHAGQEVNRALAERIVETPLKIIKIRPVVSQEVDYLSADEEDRFVIVQANAPL 640 Query: 718 AKRG----GVVQYVDASRI----VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 + G V A + +V+ ++ P + L + + + M Sbjct: 641 DEHNRFLEGTVSVRYAGDFDDVPIERVDYMDVSPKQVVSVSTALIPFLEHD-DANRALMG 699 Query: 770 --CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P+ R D G + + VA D +++S Sbjct: 700 SNMQRQAVPLLRPDAPIVGTGMEYVAARDSGQVVVAKA--------DGVVLSATA----- 746 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 E+ + D G E + + +++ IV G V GDI+ Sbjct: 747 ------DEIVILEDD---GNERSYRLRKFMRSNQDTCINQRPIVSRGQRVRKGDIIAD-S 796 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 + +L + +L A + + +D+ L VS ++ +FT +EK + Sbjct: 797 SSTDNGELALGQNVLVAFMPWEGGNFEDAIL-----VSERLVREDIFTSIHIEKYEVEAR 851 Query: 948 IEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 ++ ++ +D+ ++ I+ G + +LV + D +R Sbjct: 852 DTKLGPEEITRDIPNVGQDSLRNLDDRGIIYIGAEVQPNDILVGKITPKGETDLTAEERL 911 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 L ++ ++ + L + K+ + + +L GV + V V L K Sbjct: 912 LRAIFGEKAREVKDSSLRVPNGVRGKVIDVKVFTRDDDV----ELPVGVNQRVDVLLCQK 967 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R+I GDKMAGRHGNKGV+S+I PIEDMP+ +GTPVDI+LNP+GVPSRMNIGQI Sbjct: 968 RKISAGDKMAGRHGNKGVVSRILPIEDMPFLPDGTPVDIILNPIGVPSRMNIGQI----- 1022 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 + L R Sbjct: 1023 ----------LETHLGWAA---------------------------------------AR 1033 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 G +ATPVFDGA E EIKE LK DLP G+I LYDGRTGE F+RPVTVGY+YM+KL H Sbjct: 1034 LGYRVATPVFDGATETEIKEWLKRADLPPDGKITLYDGRTGEAFDRPVTVGYIYMMKLAH 1093 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 LV+DK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD Sbjct: 1094 LVEDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1153 Query: 1298 VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 V GR K Y+ IV G E G+PESF VL+KE++SLG+++E+ Sbjct: 1154 VVGRVKTYEAIVKGEPIQEAGVPESFKVLIKELQSLGLSVEV 1195 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 112/398 (28%), Positives = 184/398 (46%), Gaps = 60/398 (15%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NS 66 K R F + +++P L+ QL+SF+ F + GL F + PI ++G N Sbjct: 27 GKIERYSFARISNAIELPKLIETQLNSFEWF------RKEGLRELFEEISPITDFTGKNM 80 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 EL+++ Y GEP ++ EC+ RG+TYSAP+RV ++L I + ++KE E+++G+ Sbjct: 81 ELRFLDYHFGEPRYNEHECRERGITYSAPIRVNVQLRIL-------STGELKESEIFLGD 133 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 PLMT+NGTFVING ERV+VSQL RSPGV+F +K T SG+ L++A++IP RG+WL+F Sbjct: 134 FPLMTENGTFVINGAERVVVSQLIRSPGVYFKEEKDPT--SGRSLHSAKLIPSRGAWLEF 191 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRA-LNY--------------------TTEQILDLFF 225 E + +D + V++DR+RK+P TI+LRA L + E+IL+LF Sbjct: 192 ETNKRDVISVKVDRKRKIPVTILLRAVLGWRANPDGSGQWAPDNELDQRGRDEEILELFA 251 Query: 226 EKVIFE-------------IRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRIT 270 + + +EL G+ + D N + R Sbjct: 252 HLETGDHQYIKATLDKDPARHAKEALLELYKRLRPGDPPTLDNARNLIEALLFNPRRYDL 311 Query: 271 ARHIRQLEKDDV-------KLIEVPVEYIAGKVVAKDYIDESTGELICAANME-LSLDLL 322 +R R ++ ++ + ++ D + L D + Sbjct: 312 SRVGRYKLNKNLWEKDTRPEVRRQAPDVKVRVLLPDDIFKIVERMIQLNNGTPGLRADDI 371 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 L + + L G E + + + + Sbjct: 372 DHLGNRRVRTVGELIQQQFRVGLLRMERVIKERMSLQD 409 >UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacteria RepID=A7BQQ8_9GAMM Length = 1118 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 480/723 (66%), Positives = 577/723 (79%), Gaps = 18/723 (2%) Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 +R+D T L A +EIYRMMRPGEPPT EAAESLF NLFFSE+RYDLSAVGRMKFNR + Sbjct: 1 MRIDSTTTTLEAQIEIYRMMRPGEPPTPEAAESLFNNLFFSEERYDLSAVGRMKFNRRIG 60 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 R+EI G GIL+ DDI+DV++ LI+I NG G VDDIDHLGNRRIRSVGEM ENQFR+GLVR Sbjct: 61 RDEITGPGILTVDDILDVLRTLINIPNGIGGVDDIDHLGNRRIRSVGEMTENQFRIGLVR 120 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 VERAVKERLS+ +++ ++PQ++INAKP+SA+++EFFGSSQLSQFMDQNNPLSE+THKRRI Sbjct: 121 VERAVKERLSVAEIENVVPQELINAKPVSASIREFFGSSQLSQFMDQNNPLSEVTHKRRI 180 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL+VYA+TN+YGFLETP Sbjct: 181 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETP 240 Query: 591 YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 R+V DG VTD++ YLSAIEEG +VIAQAN+NLDE G+F +D+V R + E ++ S+D+V Sbjct: 241 CRRVEDGRVTDKVEYLSAIEEGGFVIAQANANLDENGYFKDDMVAARHENEFTVISKDKV 300 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +YMDVS +Q+VSV ASLIPFLEHDDANRALMG+NMQRQAVPTLRA KPLVGTGMER VA+ Sbjct: 301 NYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAQKPLVGTGMERIVAI 360 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG--------------EAGIDIYNLTKY 756 DSGVT VA+RGG++ VDA+RIV+++N+DE+ +G+DIYNLTKY Sbjct: 361 DSGVTVVAERGGIIDSVDAARIVVRINDDEVLKEGEDNSITPKFGTLLSSGVDIYNLTKY 420 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RSNQNTCINQ P V + ++RGDVLADGPSTDLGELALGQN+ VAFMPWNGYNFEDSI Sbjct: 421 VRSNQNTCINQKPLVKPDDLIKRGDVLADGPSTDLGELALGQNLFVAFMPWNGYNFEDSI 480 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 L+SERVV+E+RFT+IHI EL+C++RDTKLG EEITADIPNV E+AL LDE+GI+ IGA+ Sbjct: 481 LISERVVEEERFTSIHIVELSCLARDTKLGAEEITADIPNVSESALKNLDEAGIISIGAQ 540 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLRVP+G GTVIDVQVFTR Sbjct: 541 VMPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGTMGTVIDVQVFTR 600 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 DGV+K RA IE+ +L + KKDL + L+ILE ++ R+ +LV V + Sbjct: 601 DGVDKGARAGRIEQAELNRVKKDLQDTLRILEHDVYLRVEKLLVGNKVTNSSNGWEGWEG 660 Query: 997 WLELGLTDEEKQ-NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 +L + ++ ++ E E + + + + I + L K K L Sbjct: 661 VKKLLVGNKVTNSSKDEDGIETNTIITSRSD---DIETNTIITSEILGEPSDKWFKFSLE 717 Query: 1056 VKR 1058 K+ Sbjct: 718 DKK 720 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 237/372 (63%), Positives = 287/372 (77%), Gaps = 4/372 (1%) Query: 973 SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAK 1032 + +A L + + L LPR + EL + DE+ Q Q+E A+Q + + + E K Sbjct: 744 EKSQAQLESFKPALKALHDLPRTKLFELRVEDEKIQAQIESFAQQLKDQRQRADALYEEK 803 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 R+K+ GD+LAPGVLK+VKVYLA+KR IQPGDKMAGRHGNKGV+S I P+EDMPY ++G Sbjct: 804 RQKLISGDELAPGVLKMVKVYLAIKRTIQPGDKMAGRHGNKGVVSMIVPVEDMPYTKDGR 863 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL- 1151 PVD+VLNPLGVPSRMNIGQ+LETHLG AAK +G++I LK + + + I+ Sbjct: 864 PVDLVLNPLGVPSRMNIGQVLETHLGWAAKALGEQIEQKLKIINKSKIIAQSIEELRSYL 923 Query: 1152 ---GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 + DL+ ++ E++ LA+NL G+P+AT VFDGA E+EIK +L+L LPT+G Sbjct: 924 TKIYNVSGKPEDLTVLNNAEILELAKNLSDGVPMATQVFDGASESEIKMMLELAGLPTNG 983 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 Q LYDGRTGE F R +TVGYMYMLKLNHLVDDKMHARSTG YSLVTQQPLGGKAQFGGQ Sbjct: 984 QTTLYDGRTGEAFSRQITVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQ 1043 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLK 1328 RFGEMEVWALEAYGA+YTLQEMLTVKSDDVNGRT+MYKNIVDG+H+ME GMPESFNVL+K Sbjct: 1044 RFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTQMYKNIVDGDHRMEAGMPESFNVLVK 1103 Query: 1329 EIRSLGINIELE 1340 EIRSLGI+IELE Sbjct: 1104 EIRSLGIDIELE 1115 >UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Tax=Bacteria RepID=RPOB_DEHSB Length = 1273 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 381/1229 (31%), Positives = 594/1229 (48%), Gaps = 156/1229 (12%) Query: 181 GSWLDFEFDPKDNLFVRI--------DRRRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 G+ L+ EF + R+ D+ +P + R + TT +I + F Sbjct: 62 GNRLELEFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIVKTTGEIKEPF-------- 113 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 L +P L +F +V V + R + + I Sbjct: 114 ---DLFFGDIP--LMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPATGRPLCHTNLI 168 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL-----FTNDLDHGPYI 347 + ++ + + + + + L G+ + ++ YI Sbjct: 169 PSRGAWLEFETSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYI 228 Query: 348 SETLRVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 ++ DP D +SAL++IY +RPG+PP + A L +FF YDL VGR K N Sbjct: 229 QSSIDRDPLIKDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVN 288 Query: 407 RSLLREEIE--GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 R L E + L+++DI+ +++++I + NG+ DDIDHLGNRRIR+VGE+ +NQF Sbjct: 289 RRLELPSREVGENRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQF 348 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 R+GLVR+ER +ER+S+ +L+ + P ++N +P+ +AVKEFFG SQLSQFMDQ NPL+EI Sbjct: 349 RIGLVRLERVARERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQFMDQTNPLAEI 408 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 T+KRR+SA+GPGGL+RERAGF+VRDVH +HYGR+CPIETPEGPNIGLI SL+ Y++ N Y Sbjct: 409 TNKRRLSAMGPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRINRY 468 Query: 585 GFLETPYRKVTDGVVTDE-----IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 GF+ETPYRKV + ++ + + I E V+A A S + E+ Sbjct: 469 GFVETPYRKVYSKLKNNDKKLVGLKLKTEISEKGKVLAAAGSTISEDS------------ 516 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 + S+ + V + ++ D+ +R ++ R D + Sbjct: 517 --FKIISKLPECDISVMPFVSAE-----VKYMPADEEDRYIIAQANTRLDEKGYFLDDRI 569 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 ER V + A+ ++ + D+ G Sbjct: 570 EARSAERYVVEPPDKIDYMDVSPKQIFSVAASLIPFLEHDDANRALMGA----------- 618 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 N +P + P+ + + G++ ++ VA S + S Sbjct: 619 --NMQRQAVPLLRAEAPMVATG-MEREAARYSGQVIFAKHAGVA-----------SSVTS 664 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 E+++ T G + V + +++ I+ G ++ Sbjct: 665 EKIIIR-----------------TAEGGHDEYLLKKFVRTNQGTCINQHAIINKGQKIAA 707 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 G +L + +L + + A + + +D+ + +S ++ FT + Sbjct: 708 GQVLADSSATEN-GELALGQNCVVAFMSWQGFNYEDAII-----LSERLVREDAFTSIHI 761 Query: 940 EKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKL 989 K + ++ +++ +D+ +E I+ G +LV + Sbjct: 762 TKHELEARDTKLGVEEITRDIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGET 821 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 + ++ L ++ ++ + L + E ++ ++ GDDL V K Sbjct: 822 ELSAEEKLLRAIFGEKAREVKDTSLRMPHGEWGKVINVRIFSR----DSGDDLPARVNKW 877 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V+V++A KR++ GDK+AGRHGNKGVIS I P+EDMPY +GTPVD+VLNP+GVPSRMN+ Sbjct: 878 VQVWVAQKRKVSVGDKLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNL 937 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQILETHLG A +G ++ + + + + + R++ + K S E Sbjct: 938 GQILETHLGWAGHLLGFRVATPVFDGADDTVIEDALARSW-----LSAKAGAIDMSPENK 992 Query: 1170 MRLAENLRKGMPIATPVFDG-----------AKEAEIKELLKLGDLPTS----------- 1207 A+ + I FDG AKE +K LK + S Sbjct: 993 RPSADAHKAIEWIKQQGFDGKKIFDEKHPGLAKEVSLKLWLKDMGVDASALSGAELEKKA 1052 Query: 1208 --------------GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 G+ L DGRTGE F++PVTVG MY+LKL HLV+DK+HAR+TG YSL Sbjct: 1053 YDVSSQSRLPSPIVGKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSL 1112 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 ++QQPLGGKAQFGGQRFGEMEVWA+ AYG A+ LQEMLT+KSDD+ GR K Y++IV G Sbjct: 1113 ISQQPLGGKAQFGGQRFGEMEVWAMYAYGTAHNLQEMLTIKSDDIAGRAKAYESIVKGED 1172 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++PG+PESF VL+KE++SLG+ +E+ +E Sbjct: 1173 VLQPGVPESFKVLVKELQSLGLAVEVINE 1201 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 105/366 (28%), Positives = 174/366 (47%), Gaps = 37/366 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN-SEL 68 IRK + + P+V++VP L+ +QL SF F E+ GL + PI+ + GN EL Sbjct: 14 VIRKSYAQLPEVVNVPNLIEMQLQSFVWFQEE------GLRELIEEISPIKDFVGNRLEL 67 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ-EVYMGEI 127 +++ Y EP EC R TYS PL VK RL++ T +IKE +++ G+I Sbjct: 68 EFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIV-------KTTGEIKEPFDLFFGDI 120 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT GTF+ +GTERV+VSQL RSPGV+F ++G+ L + +IP RG+WL+FE Sbjct: 121 PLMTALGTFITSGTERVVVSQLLRSPGVYF--TISDDPATGRPLCHTNLIPSRGAWLEFE 178 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLF---------------FEKVIFE 231 +D + V+ID RRK+P + +LRA+ Y+ + IL+LF ++ Sbjct: 179 TSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLI 238 Query: 232 IRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + +++ G+ + D +++ + + R ++L Sbjct: 239 KDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELP--SR 296 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 E + + ++ I +I N + + D + L + + L N G E Sbjct: 297 EVGENRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLE 356 Query: 350 TLRVDP 355 + + Sbjct: 357 RVARER 362 >UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacteria (class) RepID=C7M2W5_ACIFD Length = 1181 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 384/862 (44%), Positives = 503/862 (58%), Gaps = 58/862 (6%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIIL-RALNYTTEQILDL-FFEKVIFEIRDNKLQMEL 241 L+ E+DP D + K A + + Y + F + +EI+ + M Sbjct: 60 LELEYDPSDPDLAPV---PKFSAEECREKDMTYAGPIFVRARFLNRQTYEIKQQIVFMGD 116 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 P L + +F I +V V + R + V + ++ Sbjct: 117 FP--LMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQHT---VVTATINPYRGEWLEF 171 Query: 302 I-------DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 D + G + +L +E L + P ++ D Sbjct: 172 DVEARPGRDINAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQWAK---ED 228 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE- 413 + R AL+E++R +RPGEP EAA FE FF RYDL+ VGR K ++ L E Sbjct: 229 HSQTRDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRLSAEIE 288 Query: 414 -------------IEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGE 458 E +LS+ DII ++ + G+ DD DH NRR+RSVGE Sbjct: 289 RVEEILGHPLDRTSESPLVLSRADIIATASYMLHLVAGEPGYRFDDQDHFSNRRVRSVGE 348 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQ ++GL R+ER V+ER++ D++ + PQ +IN +P+ AA+KEFF +SQLSQFMDQN Sbjct: 349 LIQNQLKIGLSRLERLVRERMTTQDVEAITPQSLINIRPVVAAIKEFFSTSQLSQFMDQN 408 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLS + HKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ Y Sbjct: 409 NPLSGLAHKRRLSALGPGGLSRERAGFEVRDVHSSHYGRMCPIETPEGPNIGLIGALASY 468 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 A+ N YGF+ETPYR+V DG VTDE+ YL+A EE +YVIAQAN+ LD EG FVE V R Sbjct: 469 ARLNRYGFIETPYRRVVDGKVTDEVVYLTADEEEDYVIAQANAKLDAEGRFVEPKVLVRR 528 Query: 639 K------------------GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 E L + D+VD MDVS QVVSV SLIPF+EHDDANRAL Sbjct: 529 GPQGAVVRVGAMAVSYGATSEVELATPDEVDLMDVSPAQVVSVSTSLIPFVEHDDANRAL 588 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 MGANMQ+QAVP L + P VGTG+E +D+G VA+ GVV V + I + ++ Sbjct: 589 MGANMQKQAVPLLVPEAPFVGTGVEARAGLDAGDVLVAEGPGVVSEVTGASIAVTYDDSV 648 Query: 741 MYPGEAGIDI--YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 + Y LTK+ RSNQNTC NQ P V+ G+ VE GDVLADGP+T GELALG+ Sbjct: 649 TDDAGRPLGTRRYWLTKFQRSNQNTCWNQRPTVATGDRVELGDVLADGPATMHGELALGK 708 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG 858 N+ VAFMPW GYNFED+I++SER+V++D +++HI+E +RDTKLG EEIT DIPN+ Sbjct: 709 NLLVAFMPWEGYNFEDAIIISERLVRDDVLSSLHIEEFETDARDTKLGAEEITRDIPNLS 768 Query: 859 EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSL 918 E AL+ LDE GIV IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEK+ +V+D+SL Sbjct: 769 EEALADLDERGIVRIGAEVGPGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSL 828 Query: 919 RVPNGVSGTVIDVQVFTRDG-VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 RVP+G G VIDV+VFTR+ E E+ + + Q +K + G I Sbjct: 829 RVPHGEYGKVIDVKVFTREDATELPPGVNELVRVYVAQHRKIQVGDKLAGRHGNKGVISR 888 Query: 978 VLVAGGVEAEKLDKLPRDRWLE 999 +L + D P D L Sbjct: 889 ILPIEDMP-RLEDGTPVDIILN 909 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 190/480 (39%), Positives = 275/480 (57%), Gaps = 38/480 (7%) Query: 871 VYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 V G V GD+L G T GE L LL A + + +D+ + +S ++ Sbjct: 681 VATGDRVELGDVLADGPATMHGELALGK--NLLVAFMPWEGYNFEDAII-----ISERLV 733 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVL 979 V + +E+ + ++ ++ +D+ +E I+ G +L Sbjct: 734 RDDVLSSLHIEEFETDARDTKLGAEEITRDIPNLSEEALADLDERGIVRIGAEVGPGDIL 793 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 V + + P +R L ++ ++ + L + E + K+ + Sbjct: 794 VGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGEYGKVIDVKVFTR----EDA 849 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +L PGV ++V+VY+A R+IQ GDK+AGRHGNKGVIS+I PIEDMP E+GTPVDI+LN Sbjct: 850 TELPPGVNELVRVYVAQHRKIQVGDKLAGRHGNKGVISRILPIEDMPRLEDGTPVDIILN 909 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQ+LE HLG AA+ + I ++ ++ + Sbjct: 910 PLGVPSRMNIGQVLEAHLGYAARWGWEPIGEGAREHRKTRPV------TVPARWVASPAF 963 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D + + + E +++ + P ++ E L + G+ LY+GRTGE Sbjct: 964 DGAHWDESEEAGDLPTIKELLERLNP------QSRDGERL----VQPDGKAVLYNGRTGE 1013 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 +++ PV VGY+YMLKL H+VDDK+HARSTG YS++TQQPLGGKAQFGGQRFGEMEVWALE Sbjct: 1014 RYDNPVMVGYVYMLKLAHMVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALE 1073 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AYGAAY LQE+LT+KSDDV GR K+Y+ IV G++ EPG+PESF VL+KE++SL +N+E+ Sbjct: 1074 AYGAAYALQELLTIKSDDVVGRVKVYEAIVKGDNIPEPGIPESFKVLIKEMQSLCLNVEV 1133 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 105/388 (27%), Positives = 157/388 (40%), Gaps = 51/388 (13%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 + R F VL +P L+++Q DSF+ F+ GL AFR + PI+ YSG Sbjct: 4 RHRPPERFSFASARNVLPLPDLIAVQRDSFRWFL------NEGLAEAFRDISPIEDYSGQ 57 Query: 66 SELQYV----SYRLGE-PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 L+ L P F +EC+ + +TY+ P+ V+ R + +IK+Q Sbjct: 58 LALELEYDPSDPDLAPVPKFSAEECREKDMTYAGPIFVRARFLN-------RQTYEIKQQ 110 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 V+MG+ PLMTD GTF+INGTERV+VSQL RSPGV F + + + A I PYR Sbjct: 111 IVFMGDFPLMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQ-----HTVVTATINPYR 165 Query: 181 GSWLDFEFD----PKDNLFVRIDRRRKLPATIILRALNYTTE----------QILDLFFE 226 G WL+F+ + N R+ R+R+L +LRA L+ + Sbjct: 166 GEWLEFDVEARPGRDINAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQWA 225 Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEA--NGKVYVEKGRRITARHIRQLEKDDVKL 284 K + ME+ GE + + + + R R R + Sbjct: 226 KEDHSQTRDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRLSA 285 Query: 285 IEVPVEYIAGKVVAKDYIDE---STGELICAANMELS---------LDLLAKLSQSGHKR 332 VE I G + + S ++I A+ L D S + Sbjct: 286 EIERVEEILGHPLDRTSESPLVLSRADIIATASYMLHLVAGEPGYRFDDQDHFSNRRVRS 345 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRL 360 + L N L G E L + + Sbjct: 346 VGELIQNQLKIGLSRLERLVRERMTTQD 373 >UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax=Cyanidioschyzon merolae RepID=RPOB_CYAME Length = 1036 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 343/853 (40%), Positives = 473/853 (55%), Gaps = 29/853 (3%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 + ++R + +P L E A+F I +V V + R + + L Sbjct: 75 LWNHQTGDVRQQMIYFGEIP--LMTEDATFIINGAERVVVNQIVRSPGVYFQALWDKQHV 132 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 ++A + Y + L + + L+ L G E L + Sbjct: 133 R-TFEATFMANRGAWIKYELDKQKLLWVRLDKNRKMPLVIFLQALGLNLQE--IKPHLTN 189 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + N+ +ALVE Y+ MRPGEP T +A+ L FF +YDLS VGR Sbjct: 190 REVFERSWENHAVNNTEAALVEFYKKMRPGEPATVHSAKQLLYARFFDPKKYDLSEVGRY 249 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 K N+ L + IL+ D++ + LI + + VDDIDHL NRR++ VGE+ +NQ Sbjct: 250 KLNQKLHLDIPLSVHILTTSDLLAGLDYLIQLCLDRARVDDIDHLANRRLKCVGELLQNQ 309 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 R+GL R+E+ ++E++++G+ L P ++N KP+++A++EFF SSQLSQFMDQ NPL+E Sbjct: 310 VRIGLSRLEKLLREKMTIGE--KLQPSSLLNPKPLTSAIREFFASSQLSQFMDQINPLAE 367 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 +THKRRISALG GGLTRERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+++A+ N Sbjct: 368 LTHKRRISALGAGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLAIFARVNR 427 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 YGF+ETPY V G V I YL+A E NY +A A+ D EG +V R + E + Sbjct: 428 YGFIETPYYPVKKGQVQKSIVYLTADVEDNYRLAPADVKYDREGQICSPIVAVRYRQEWT 487 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 VDYM +S Q +S LIPFLEHDDANRALMG+NMQRQAVP +RA KP V TG Sbjct: 488 TCDASHVDYMAISPIQFISAATCLIPFLEHDDANRALMGSNMQRQAVPLIRASKPYVSTG 547 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 E+ + +K G+V+ V A+ I I+ G Y L KY +SNQ+T Sbjct: 548 QEKWMVQG----VFSKADGIVRSVQATSIRIQH--------ARGPVDYALLKYQKSNQDT 595 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 CI+ P V +GE V +G ++A + D GELALGQN+ +A+MPW GYNFED+ ++SER+V Sbjct: 596 CIDYRPLVWVGEHVVKGQLIAQSAAMDSGELALGQNVLIAYMPWEGYNFEDAFVISERLV 655 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 ED +T+IHI++ +R TKLG E+IT IPNVGE AL +LDE GI+ +G+ V G IL Sbjct: 656 YEDVYTSIHIEKYETDARQTKLGAEQITRQIPNVGEHALRQLDEHGIISVGSWVEAGSIL 715 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKD 942 VGK+TPKGE+ PE KLLRAIFGEK VKDSSLR+PNG G VI V++ +RD G E Sbjct: 716 VGKITPKGESDQPPEGKLLRAIFGEKNQHVKDSSLRMPNGSRGRVIHVRILSRDQGDELP 775 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + + + + G + +L + LP +++ L Sbjct: 776 AGVNISVRVSVAVKRVIQVGDKMAGRHGNKGIVARILPRCDMPY-----LPDGTPVDVIL 830 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 +++ Q E KR KI D++ + V+ +KR Sbjct: 831 NPLGVPSRMN--VGQLFEALLGLAAHRLRKRIKIVPFDEMYHKEASRIFVHQQLKRAALS 888 Query: 1063 GDK--MAGRHGNK 1073 GR G K Sbjct: 889 AQTILYDGRSGEK 901 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 95/436 (21%), Positives = 180/436 (41%), Gaps = 49/436 (11%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81 + L+++Q +S+ F+ + L+ F + PI Y+G EL + L P Sbjct: 1 MRDLIAVQRNSYYTFLTKS------LKEEFDKISPIVDYTGQLELHLITSKMELKPPKIT 54 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 + + + +TYS + + ++L ++ D+++Q +Y GEIPLMT++ TF+ING Sbjct: 55 PVQAKRQDITYSVGMYMPVQLWNHQ-------TGDVRQQMIYFGEIPLMTEDATFIINGA 107 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERV+V+Q+ RSPGV+F + K H + A + RG+W+ +E D + L+VR+D+ Sbjct: 108 ERVVVNQIVRSPGVYFQALWDKQHV---RTFEATFMANRGAWIKYELDKQKLLWVRLDKN 164 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIR--------DNKLQMELVPERLRGETASF 253 RK+P I L+AL ++I + +FE +E + GE A+ Sbjct: 165 RKMPLVIFLQALGLNLQEIKPHLTNREVFERSWENHAVNNTEAALVEFYKKMRPGEPATV 224 Query: 254 DIEAN---GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + + K ++ +L + I + V + + LI Sbjct: 225 HSAKQLLYARFFDPKKYDLSEVGRYKLNQKLHLDIPLSVHILTTSDLLAGL-----DYLI 279 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 +D + L+ K + L N + G E L + + I + Sbjct: 280 QLCLDRARVDDIDHLANRRLKCVGELLQNQVRIGLSRLEKLLREK--------MTIGEKL 331 Query: 371 RPGEP----PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 +P P A F + S+ ++ + + R + G+G L+++ Sbjct: 332 QPSSLLNPKPLTSAIREFFASSQLSQFMDQINPLAELTHKRRIS---ALGAGGLTRERAG 388 Query: 427 DVMKKLIDIRNGKGEV 442 ++ + G+ Sbjct: 389 FAVRDIHPSHYGRICP 404 >UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 Tax=Bacteria RepID=RPOB_BIFLD Length = 1187 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 350/797 (43%), Positives = 483/797 (60%), Gaps = 33/797 (4%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 F EI+ + M P L+ +F I +V V + R + + + Sbjct: 135 FENGDTGEIKSQTVFMGDFP--LQTPHGTFIIGGTERVIVSQLVRSPGVYFDRQQDRTSD 192 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + ++ + + + + + L G + E Sbjct: 193 KEVFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMTKSEIAQA--FKD 250 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 P + + L + + ALV++YR +RP + PT EA ++L ++ +F+ RYDL+ VGR Sbjct: 251 YPLVLDALEKETLGTQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTKRYDLARVGRY 310 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI---------------DHL 448 K NR L E L ++DII +K L+ + +G DH Sbjct: 311 KINRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGKRNGEDVDLRVDVDDIDHF 370 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 GNRRIR VGE+ +NQ R GL R+ER V+ER++ D + + PQ +IN +P++A +KEFFG+ Sbjct: 371 GNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPVNATIKEFFGT 430 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQLSQFMDQNNPLS +T+KRR+SALGPGGL+R+RA EVRDVHP+H+GR+CPIE+PEGPN Sbjct: 431 SQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMCPIESPEGPN 490 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 IGLI SL+ + + N +GF+ETPYRKV +G VTDE+ Y++A + ++VIAQAN LDE G+ Sbjct: 491 IGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIAQANQELDENGN 550 Query: 629 FVEDLVTCRSKGES-SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 FV+ R E VDYMDVS +Q+VS+GASLIPFLEHD+ +RALMG NMQR Sbjct: 551 FVQKSALARVGEEEAVDVPVSSVDYMDVSPRQMVSLGASLIPFLEHDEGHRALMGTNMQR 610 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 QAVP + +++PLVGTG E A DSG +++ GVV YV A I + ++ Sbjct: 611 QAVPLIESERPLVGTGSEWRAANDSGDVIKSEKDGVVTYVSADLIRVMNDD-------GT 663 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 Y L K+ RSNQ TC NQ P V GE VE G V+ADGP+ G+LALG+N+ +AFMPW Sbjct: 664 TSSYKLAKFQRSNQTTCYNQRPIVHDGERVEAGSVMADGPAIQNGDLALGKNLLIAFMPW 723 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 NGYN+ED++++S+R+VQ+D ++IHI+E +R+TKLG EEIT D+PNVGE A++ LDE Sbjct: 724 NGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANLDE 783 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 GI+ IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEK+ +V+D+SLRVP+G +GT Sbjct: 784 RGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGT 843 Query: 928 VIDVQVFTR-----DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 VI V+ TR DG E ++ + + Q +K + G I +L Sbjct: 844 VIGVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRILPEE 903 Query: 983 GVEAEKLDKLPRDRWLE 999 + D P D L Sbjct: 904 DMPF-LADGTPVDIMLN 919 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 188/490 (38%), Positives = 266/490 (54%), Gaps = 52/490 (10%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 IV+ G V G ++ + L + LL A + +D+ + +S ++ Sbjct: 686 IVHDGERVEAGSVMADGPAIQN-GDLALGKNLLIAFMPWNGYNYEDAVI-----ISQRLV 739 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVL 979 + +E+ + ++ ++ +DL +E I+ G +L Sbjct: 740 QDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANLDERGIIRIGAEVEAGDIL 799 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 V + + P +R L ++ ++ + L + E K + G Sbjct: 800 VGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGETGTVIGVKEITREDAEEDG 859 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L GV ++++VY+A R+I GDK++GRHGNKG IS+I P EDMP+ +GTPVDI+LN Sbjct: 860 DELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRILPEEDMPFLADGTPVDIMLN 919 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMN+GQ+LE HLG A G D+ Sbjct: 920 PLGVPSRMNLGQVLELHLGWIAH----------------------------SGWDISLDP 951 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG--------QIR 1211 +L + + AE P+ATPVFDG K +K LL G + Sbjct: 952 NLEAEWKKLIPSGAEKAEPNTPVATPVFDGVKPEVLKGLLSTTLPNRDGDRLVGPDGKAT 1011 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 L+DGRTGE + +P++VGYMYMLKL+HLVDDK+HARSTG YS++TQQPLGGKAQFGGQRFG Sbjct: 1012 LFDGRTGEPYTKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFG 1071 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EMEVWALEAYGAAYTL EM+T KSDDV+GR ++Y IV G++ G+PESF VLLKE++ Sbjct: 1072 EMEVWALEAYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQ 1131 Query: 1332 SLGINIELED 1341 SL +N+E+ + Sbjct: 1132 SLSLNVEVLN 1141 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 101/311 (32%), Positives = 145/311 (46%), Gaps = 35/311 (11%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI----------------EQDPEGQYGLE 50 K R +FG + +DVPYLL +Q DSF I GL+ Sbjct: 24 HKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNERWKARVEEDEKNGTNTVAHTSGLD 83 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAP 110 F + PI++++ L + EP VQEC+ + TYSAPL V Sbjct: 84 EVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKEKDYTYSAPLYVNAEF-------E 136 Query: 111 EGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 G +IK Q V+MG+ PL T +GTF+I GTERVIVSQL RSPGV+FD + +T S K Sbjct: 137 NGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGVYFDRQQDRT--SDKE 194 Query: 171 LYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF 230 ++ A+IIP RG+WL+FE D KD VR+DR+RK A + L A+ T +I F + + Sbjct: 195 VFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMTKSEIAQAFKDYPLV 254 Query: 231 EI--------RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKD 280 ++ ++L + +T + + N Y R AR R Sbjct: 255 LDALEKETLGTQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTKRYDLARVGRYKINR 314 Query: 281 DVKLIEVPVEY 291 + + + Sbjct: 315 KLGVEADFNDR 325 >UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 Tax=Bacteria RepID=RPOB_MYCCT Length = 1287 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 376/931 (40%), Positives = 562/931 (60%), Gaps = 85/931 (9%) Query: 98 VKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF 157 +++ ++ ++ + V K EV++G+ PLMT+ GTF+ING+++VIVSQL RSPG +F Sbjct: 160 IQIDIIEDKKTSLICNVSIYKSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPGAYF 219 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN-------LFVRIDRRRKLPATIIL 210 + + + +G+++Y A IIP RG+WL++E D K L+V+ID+ RK AT +L Sbjct: 220 NKELNRK--TGEMIYFADIIPSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTATSLL 277 Query: 211 RALNYTTEQILDLFFEKVI-------------FEIRDNKLQMELVPERLRGETASFDIEA 257 A + + IL++F + F+I + E+ + +GETA+ + + Sbjct: 278 LAFGISKDDILNIFDNDEVLVETLQQDSIIGDFKIDWSNQVQEIYKKIRQGETATSEGAS 337 Query: 258 N--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + +K + + R K + + I KV+A+D +D + ++ A + Sbjct: 338 KFINSILFDKRKYDLTKAGRFKLKQKLSI----KNRILNKVIAEDILDANNN-VLIAKDT 392 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 E++ + + ++S+ + + ++ L P + V+ R+ + E Sbjct: 393 EVTKNNIQEISKILDQDVMSIDLKYLSDIPGNRK--------------VQKIRVYKDSEL 438 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 T + ++ DI+ + L+++ Sbjct: 439 KTDTTCL--------------------------IGLTNSSNEEFITVADILSTVSYLLNL 472 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 + GE+DDID+LGNRR+R+VGE+ +NQFR+GL R+++ VKE+L+ DL + +INA Sbjct: 473 KYNIGEIDDIDNLGNRRVRTVGELLQNQFRMGLNRIDKNVKEKLATSDLYKVKTSTIINA 532 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 KP++A + EFF SQLSQFMDQ NPLSE+T+KRR++ALGPGGL+R+RAG EVRDVHP+HY Sbjct: 533 KPLTAIIGEFFNLSQLSQFMDQINPLSELTNKRRLTALGPGGLSRDRAGLEVRDVHPSHY 592 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE-IHYLSAIEEGNY 614 GR+CPIETPEGPNIGLIN+LS YA+ NEYGF+ TPYRKV +G++ ++ + YL+A +E N+ Sbjct: 593 GRICPIETPEGPNIGLINNLSTYARVNEYGFITTPYRKVINGIIQNDQVEYLTADQEKNF 652 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 +IAQ+N N DE G +++++ R G+ + +++ Y+DVS +Q+VSV S IPFLE+D Sbjct: 653 IIAQSNVNQDENGKILDEIIVSRFNGDDYMAKVEEIHYIDVSPKQIVSVATSGIPFLEND 712 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DANRALMGANMQRQAVP ++ + P+V TG+E A DSG VAK +V+YVD+ I Sbjct: 713 DANRALMGANMQRQAVPLIKPESPIVATGIEFEAARDSGEAIVAKEDAIVKYVDSKTI-- 770 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + GE+GI Y L+ Y RSN T + Q P V +G+ V++G+++ADGPS D GEL Sbjct: 771 ------ITDGESGIRTYILSDYERSNNGTSLTQSPIVKVGDVVKKGEIIADGPSMDQGEL 824 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 A+GQN+ VAF +NGYNFED+I++SER+V +DRFT+IHI E R+TK G EE+T +I Sbjct: 825 AIGQNVVVAFSTYNGYNFEDAIVMSERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVTREI 884 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 PN+ E A LD GIV IG EV GD+LVGKVTPKG+ QL+PE+KLL AIFGEK+ +VK Sbjct: 885 PNMSEQAKRHLDAEGIVAIGTEVKVGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSRNVK 944 Query: 915 DSSLRVPNGVSGTVIDVQVF------TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 D+SLRVPNG G V ++ F DG+E +E+ ++ + Q +K + Sbjct: 945 DNSLRVPNGGEGIVQSIKRFKAKSALNPDGIELPADIIEVIKVYVVQKRKIQEGDKMSGR 1004 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 G I +L + + D P D L Sbjct: 1005 HGNKGIISRILPIEDMPHLE-DGTPVDIILN 1034 Score = 487 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 319/1404 (22%), Positives = 546/1404 (38%), Gaps = 243/1404 (17%) Query: 1 MVYSYTE--KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 M Y + + R+D+ K L +P L+ IQ ++F+ F G++ FP Sbjct: 1 MAYKIRKINRNVERRDYTKVSMNLSLPNLIGIQTETFEWF------KTKGIQEVLDEFFP 54 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I S+ G+S L ++ EP V++ + Y AP+ L+L + + E + + Sbjct: 55 ILSFDGSSVLTLENWGFKEPRLSVRQAREESKIYDAPIYANLKLSVNKTEEIQKEFDGVD 114 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 +++ +V+ L G + K S + I Sbjct: 115 QEDTL-------------------KVLTHWLEEKTG--NGNITFKQQSQNSYFFEITIKK 153 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 + D + + I +K + + ++ Sbjct: 154 S---------EKPDLIQIDIIEDKKTSLIC-------------------NVSIYKSGEVF 185 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + P L E +F I + KV V + R + + + + I + Sbjct: 186 LGDFP--LMTEAGTFIINGSQKVIVSQLVRSPGAYFNKELNRKTGEMIYFADIIPSRGTW 243 Query: 299 KDYIDESTGE-------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 +Y +S L + + L G + + L N D+ + ETL Sbjct: 244 LEYETDSKKIGSDAINPLYVKIDKSRKTTATSLLLAFGISKDDIL--NIFDNDEVLVETL 301 Query: 352 RVDPTN-----DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + D D + + EIY+ +R GE T E A ++ F + +YDL+ GR K Sbjct: 302 QQDSIIGDFKIDWSNQVQEIYKKIRQGETATSEGASKFINSILFDKRKYDLTKAGRFKLK 361 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + L + + ++ +DI+D ++ ++ + ++I + I + + ++ + Sbjct: 362 QKLSIKNRILNKVI-AEDILDANNNVLIAKDTEVTKNNI-----QEISKI--LDQDVMSI 413 Query: 467 GLVRVERAVKERLSLGDLDTLMPQDMINAKP----ISAAVKEFFGSSQLSQFMDQNNPLS 522 L + + + ++ ++ + E F + D + +S Sbjct: 414 DLK-YLSDIPGNRKVQKIRVYKDSELKTDTTCLIGLTNSSNEEFIT-----VADILSTVS 467 Query: 523 EITHK---------------RRISALG-------PGGLTRERAGFEVRDVHPTHYGRVCP 560 + + RR+ +G GL R + + + +V Sbjct: 468 YLLNLKYNIGEIDDIDNLGNRRVRTVGELLQNQFRMGLNRIDKNVKE-KLATSDLYKV-- 524 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA--Q 618 +IN+ + A E+ L D+I+ LS + + A Sbjct: 525 ------KTSTIINAKPLTAIIGEFFNLS------QLSQFMDQINPLSELTNKRRLTALGP 572 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 + D G V D+ + + + + ++ S A + + R Sbjct: 573 GGLSRDRAGLEVRDVHPSHYGRICPIETPEGPNIGLINNL---STYARVNEYGFITTPYR 629 Query: 679 ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIV 733 ++ +Q V L AD+ + V D V++ G I Sbjct: 630 KVINGIIQNDQVEYLTADQEKNFIIAQSNVNQDENGKILDEIIVSRFNGDDYMAKVEEIH 689 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQ-----NTCINQMPCVSLGEPVERGDVLADGPS 788 + A I L +N+ N +P + P+ + + + Sbjct: 690 YIDVSPKQIVSVATSGIPFLEN-DDANRALMGANMQRQAVPLIKPESPIVATGIEFE-AA 747 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILV---SERVVQEDRFTTIHIQELACVSRDTKL 845 D GE VA ED+I+ S+ ++ + R L Sbjct: 748 RDSGE------AIVA--------KEDAIVKYVDSKTIITDG----------ESGIRTYIL 783 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRA 904 E + + + L +S IV +G V G+I+ G +GE L + ++ A Sbjct: 784 SDYERSNN--------GTSLTQSPIVKVGDVVKKGEIIADGPSMDQGE--LAIGQNVVVA 833 Query: 905 IFGEKASDVKDSS-----LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 + +D+ + + + + ID ++ + + E + + K Sbjct: 834 FSTYNGYNFEDAIVMSERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVTREIPNMSEQAKR 893 Query: 960 LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD 1019 + I+ G ++ VLV ++ P D+ L ++ + + L Sbjct: 894 HLDAEGIVAIGTEVKVGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSRNVKDNSLRVPNG 953 Query: 1020 ELKHEFE-KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 K+ +AK G +L +++++KVY+ KR+IQ GDKM+GRHGNKG+IS+ Sbjct: 954 GEGIVQSIKRFKAKSALNPDGIELPADIIEVIKVYVVQKRKIQEGDKMSGRHGNKGIISR 1013 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I PIEDMP+ E+GTPVDI+LNP GVPSRMNI G + L + Sbjct: 1014 ILPIEDMPHLEDGTPVDIILNPQGVPSRMNI---------------GQILEIHLGMAAK- 1057 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 + + TPVF+G E E++E+ Sbjct: 1058 --------------------------------------KLNQKVITPVFEGLNEKELEEI 1079 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 + + G++ L DG+TGE F++P+ VG MYMLKL+H+VDDK+HAR+ G YSL+TQQP Sbjct: 1080 MAEAGMTNYGKVTLIDGQTGEPFDKPIAVGVMYMLKLSHMVDDKIHARNVGPYSLITQQP 1139 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGKAQ GGQRFGEMEVWALEAYGAA+TL+E+LT+KSDD+ GR+K Y+ IV EPG Sbjct: 1140 LGGKAQNGGQRFGEMEVWALEAYGAAHTLREILTIKSDDIKGRSKTYEAIVRSKRIPEPG 1199 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +PESFNVL KEI LG N+ + DE Sbjct: 1200 IPESFNVLSKEIMGLGFNMYMIDE 1223 >UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQN5_FIBSS Length = 1429 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 365/795 (45%), Positives = 499/795 (62%), Gaps = 91/795 (11%) Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL---VTCRSKGESSL------ 644 V + +V+D I YL+A EE ++ +A A++ LDE F D+ V R K E Sbjct: 671 VVEQIVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYVIVRDKSEYPHLMKQDS 730 Query: 645 -----FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 +++D MDV+ Q+VSV A LIPFLEHDDANRALMG+NMQRQAVP LRA+ P+ Sbjct: 731 IAIGDTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLLRAEAPV 790 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN--------------EDEMYPGE 745 VGTG+ER A+DSG AK G V +VDA I ++ E+ + G+ Sbjct: 791 VGTGLERRAALDSGTVVRAKHDGKVTFVDARNITVQRGKMVNGVFEPLTGLGENYEFLGK 850 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 ID Y L K+ RSNQ++CINQ P V++G+ VE GDVLADG STD GELALG+N+ + F+ Sbjct: 851 DPIDEYTLRKFERSNQDSCINQKPIVNVGDFVEVGDVLADGVSTDHGELALGKNILIGFL 910 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PWNGYN+ED++++SE + +D FT+IHI+E RDTK GPEE+T +IPNVGE AL L Sbjct: 911 PWNGYNYEDAVIISEELAIKDTFTSIHIEEYEMEVRDTKRGPEELTREIPNVGEDALRNL 970 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE+G++ +GAEV DILVGKVTPKGET+LTPEE+LLRAIFGEKA DV+DSSL+ P G+ Sbjct: 971 DENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEKAGDVRDSSLKAPPGMK 1030 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV- 984 G V++ ++F++ ++ E ++ +++ +++ ++ ++ + +L Sbjct: 1031 GVVLETRIFSKKDKADK-KSKEKDQETIEEIRQNFQSQIDRIKDACREHLFDLLAGKSAG 1089 Query: 985 ---------------------EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 +D + D++ Q+++ L + Sbjct: 1090 KVMDNETHELLIREGQTYNEQNLRLIDVTKVSPLSTFVVDDDDLQDKVLSLVLVARDNLD 1149 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 + +E + K+T+GD+L PGVLK VKVY+A KR + GDKMAGRHGNKGV+S+I P+E Sbjct: 1150 TLTRTMEKEIDKVTKGDELKPGVLKSVKVYIAKKRCLSIGDKMAGRHGNKGVVSRIVPVE 1209 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP+ E+G P+ I+LNPLGVPSRMNIGQ+LE HLG AAK +G K+ + + + + Sbjct: 1210 DMPFTEDGRPLQILLNPLGVPSRMNIGQVLEVHLGWAAKTLGFKVTTPVFDGAKFEDICK 1269 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 +++AY V ++D + Sbjct: 1270 ELEKAYQKNPIVNYEMDPD----------------------------------------N 1289 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G+ +LYDG+TGE PVT+GYMY LKL HLVDDK+HARS GSY+LVTQQPLGGK+ Sbjct: 1290 NKIIGKAKLYDGKTGEALLNPVTIGYMYYLKLGHLVDDKIHARSIGSYALVTQQPLGGKS 1349 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESF 1323 QFGGQRFGEMEVWA+EAYGAAYTLQE+LTVKSDDV GR+K+Y IV G + +PG+PESF Sbjct: 1350 QFGGQRFGEMEVWAMEAYGAAYTLQELLTVKSDDVQGRSKVYDAIVKGQNTPKPGIPESF 1409 Query: 1324 NVLLKEIRSLGINIE 1338 NV+++E+ SLG++IE Sbjct: 1410 NVMIREVHSLGLDIE 1424 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 288/1094 (26%), Positives = 465/1094 (42%), Gaps = 130/1094 (11%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNS 66 RK + L++PYL+ +Q S+++F+++D GLE FR +FPI Sbjct: 4 ERKSYSSNKFHLELPYLIEVQKASYEQFLQKDIPQEKRMNVGLERVFRDIFPITDDKDLY 63 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 L+Y Y G P + + EC+ RG+TYS L L L ++E++ E +K+ + +V + + Sbjct: 64 SLKYEGYYFGIPKYSIPECRERGLTYSMELFATLSLQVFEKDGEESKLKEEIKNDVLVCD 123 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 +P+MT+NGTF+ING ERV+VSQLHRSPGV FD + +G+ Y +RIIP+RG+W++F Sbjct: 124 LPIMTENGTFIINGAERVVVSQLHRSPGVSFDEE---MQPNGRSDYKSRIIPHRGAWVEF 180 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPER 245 + D L++ IDR++K+ AT +LR + + TT+ IL+LF++K + D+ + E Sbjct: 181 NTEG-DILYLIIDRKKKIAATAMLRCIGFETTQDILNLFYKKTDEIVLDDAAFNDFDKEG 239 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 + I + ++ I + A ID+ Sbjct: 240 VCT-------------------LINRIIFNDVVDEETGEIILE---------ANTVIDDK 271 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 L +L +S ++I L + + I TL D T R AL Sbjct: 272 K---------------LERLRESSVEKITVL--SKEEDNLLIHYTLAADKTKSREDALKA 314 Query: 366 IYRMMR--PGEPPTREAAESLFENLFFS-EDRYDLSAVGRMKFNRSLLRE---------- 412 +Y + E P + AE F+ LF + +YDL VGR + N + Sbjct: 315 VYSVTHQQQEEAPNLQTAERYFDELFLNDPHKYDLGEVGRYRLNAKVYTAAILAKVKEVA 374 Query: 413 -----------EIEGSGILSKDDIIDVMKKLIDIRNGKG--EVDDIDHLGNRRIRSVGEM 459 +SK D + +++ ++ + NG +DDIDHLGNRR RSVGE+ Sbjct: 375 ERFDRVNEFKMPSVTQMTMSKTDFLAIIEYMVGLFNGDEGYTLDDIDHLGNRRTRSVGEL 434 Query: 460 AENQFRVGLVRVERAVKERLSL-GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 Q VGL R+ R ++E LSL + + P++++N + +S V+ FFG SQLSQFMDQ Sbjct: 435 LAGQISVGLSRMSRVIRENLSLHSEEEQTTPRELVNTRMVSTVVQAFFGQSQLSQFMDQM 494 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ Y Sbjct: 495 NPLSELTHKRRLSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLINSLASY 554 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE------D 632 A N +GF+ETPYR V D E + + + FVE + Sbjct: 555 AVVNHFGFIETPYRIVGLVEFKDAQGNKCYFPEEKWHFGIFKGFVHDPHLFVELELTQKE 614 Query: 633 LVTCR-----SKGESSLFSRDQV--------DYMDVSTQQVVSVGASLIPFLEHDDANRA 679 + T R + E ++V + + +++ D Sbjct: 615 IDTVRLNLDNRQRELFEGFVNKVFQLKDADGNVSYSKNGFALDDFDGTPDYVQVGDVVEQ 674 Query: 680 LMGANMQRQAVP------------TLRADKPLVGTGMERAVAVDSGVTAV-AKRGGVVQY 726 ++ + L + G + D K+ + Sbjct: 675 IVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYVIVRDKSEYPHLMKQDSIAIG 734 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 + + ++ M + ++ +N+ + M P+ R + G Sbjct: 735 DTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGSNM--QRQAVPLLRAEAPVVG 792 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDS--ILVSERVVQEDRFTTIH--IQELACVSRD 842 + AL V F D+ I V + F + + + +D Sbjct: 793 TGLE-RRAALDSGTVVRAKHDGKVTFVDARNITVQRGKMVNGVFEPLTGLGENYEFLGKD 851 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 + N +++ IV +G V GD+L V+ +L + +L Sbjct: 852 PIDEYTLRKFERSNQDSC----INQKPIVNVGDFVEVGDVLADGVSTDH-GELALGKNIL 906 Query: 903 RAIFGEKASDVKDSS-----LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 + +D+ L + + + I+ ++ L E + + Sbjct: 907 IGFLPWNGYNYEDAVIISEELAIKDTFTSIHIEEYEMEVRDTKRGPEELTREIPNVGEDA 966 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 +E ++ G +LV + + P +R L ++ + L Sbjct: 967 LRNLDENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEKAGDVRDSSLKAP 1026 Query: 1018 YDELKHEFEKKLEA 1031 E ++ + Sbjct: 1027 PGMKGVVLETRIFS 1040 >UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Tax=Bacteria RepID=RPOB_MYCPN Length = 1391 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 337/1095 (30%), Positives = 540/1095 (49%), Gaps = 115/1095 (10%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 R+ +GK P L IQ+ S+Q F++ D LE + FPI+S + Sbjct: 12 YSPTATRRYYGKIATDFVQPNLADIQIRSYQTFLDHD------LENLIAAYFPIKSPNDR 65 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL------VIYEREAPEGTVKDIKE 119 + + R P + + + TY + L L I + + Sbjct: 66 YTINFKGLRRTAPERNEAQSRSESKTYEIGIYADLELIDSATGTIKKPRKSKKNSATSSV 125 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVF-FDSDKGKTHSSGKVL---YNAR 175 V++ +PL+T +G F++NG E+ +++Q+ RSPG++ + K SS K + Y Sbjct: 126 DGVFLTNLPLITRDGVFIVNGIEKFVIAQITRSPGIYMLTKSQLKLSSSRKRVQEGYVCE 185 Query: 176 IIPYRGSWLDFEFDPKDNL---FVRIDRR-------RKLPATIILRALNYTTEQILDLFF 225 ++P GS + K + FV+I R + P T +L+A + ++IL +F Sbjct: 186 VLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGMSGKEILKVFK 245 Query: 226 EKVIFEIRDNKLQM----------ELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 + LR + ++ R Sbjct: 246 NNEFITRSLEAEVYNAKDFLNNVDPEIKNLLREFRDGKTDLRRKGIASDQKIRSLVSDYV 305 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI-- 333 LEK+ L E + D + + A + +L L + Sbjct: 306 LLEKEHKALSEAKPNDPKVGQLEADMDELMDKIITERAAKHIVHELSISLRGLENTDECP 365 Query: 334 -----ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM--------------MRPGE 374 L + Y + +L IY+ ++ G Sbjct: 366 ENSYHALLCSRFFRQRRYNLSAAGRYKVSRKLRITERIYQKTLACDLHLKNGELLLKKGT 425 Query: 375 PPTREAAESLFENLFFSEDRYD--------------------LSAVGRMKFNRSLLREEI 414 +E + + + ++ + ++ N + Sbjct: 426 LLVKEEIDKIKQAAQNNQIDFVQKIKLTTDGSAVNLSPESLLYESLDVYVNNDNFDVSVP 485 Query: 415 --------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + + ++ D I + +I+I + G+ DDIDHLGN+R++ + E+ ++ Sbjct: 486 VVGIHNDNDLNKAITLSDFIASISYVINIPSAIGKYDDIDHLGNKRVKLINELISSRLES 545 Query: 467 GLVRVERAVKERLSLGD-------------------LDTLMPQDMINAKPISAAVKEFFG 507 G+ R+ER +KE+L++ D L + +IN+KPI +++FF Sbjct: 546 GITRMERFLKEKLTIADGVNRGQQINEEGQVIEQAEKKELTIKSLINSKPIQIVIRDFFN 605 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 + QL+QF+D NPLSE+++KRRISA+GPGG++RE ++RDVH + YGR+CPIETPEG Sbjct: 606 THQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIETPEGM 665 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS--NLDE 625 NIGLI SL+ +A+ +E GFL PYRK+ +GV+TDE+ YL+A+ E ++IA+ +S N+DE Sbjct: 666 NIGLIMSLASFAKIDENGFLMAPYRKIKNGVITDEVEYLTALREDEHIIAEISSLVNIDE 725 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 ++ + R + L+ ++DY+DV+ QVVS+G+SLIPFLE+DD+ RALMG NM Sbjct: 726 NNKILDKEIIGRYRSMQGLYDPSKIDYIDVAPHQVVSIGSSLIPFLENDDSARALMGTNM 785 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 QRQA P ++ P+VGTG E +A DSG+T +A G V+YVD S+I I+ + E + Sbjct: 786 QRQAYPLIKPYAPVVGTGQEYKIARDSGLTMLAPCSGTVKYVDNSKITIESDSGEQH--- 842 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 +L K+ RSNQNTC N +P V G+ V + +V+ADGP+ + EL+LGQN+ VAF Sbjct: 843 ----TLDLIKFERSNQNTCYNHVPLVEKGQRVTKDEVIADGPAVNKSELSLGQNVLVAFT 898 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 WNGYN+ED+I++SER+V++D T++ I E TK G E+IT DIPNV +A L Sbjct: 899 TWNGYNYEDAIVISERLVKDDVLTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYL 958 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE+GI+ +GAEV GD+LVGKV+PKG+ +++PEEKL +AIF E +V+DSSL++P+G Sbjct: 959 DENGIIMVGAEVKEGDVLVGKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLKLPHGGD 1018 Query: 926 GTVIDVQVFT-RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G V V+ F+ +G E + +E+ ++ + Q +K + G I V+ + Sbjct: 1019 GIVSCVKRFSIANGNELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPVADM 1078 Query: 985 EAEKLDKLPRDRWLE 999 + D P D L Sbjct: 1079 PHLE-DGTPVDILLN 1092 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 177/498 (35%), Positives = 261/498 (52%), Gaps = 33/498 (6%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 +V G VT D ++ +++L+ + +L A + +D+ + V V+ Sbjct: 863 LVEKGQRVTK-DEVIADGPAVNKSELSLGQNVLVAFTTWNGYNYEDAIVISERLVKDDVL 921 Query: 930 DVQVFTRD-----GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 + + + + A K +E I+ G + VLV Sbjct: 922 TSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDENGIIMVGAEVKEGDVLVGKVS 981 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 +++ P ++ + + + + L + KR I G++L Sbjct: 982 PKGQVEVSPEEKLFKAIFPESVQNVRDSSLKLPHGGDGIVS----CVKRFSIANGNELND 1037 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 GV++++KVY+ KR+IQ GDK+AGRHGNKGVISK+ P+ DMP+ E+GTPVDI+LNPLGVP Sbjct: 1038 GVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPVADMPHLEDGTPVDILLNPLGVP 1097 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV---RQKVDL 1161 SRMNIGQI E HLG AA + ++ + A+ D K + Sbjct: 1098 SRMNIGQIFEMHLGYAAHNLAKRMLISACFDDKKAQALSTEINQPQYKLDRLITGLKAQI 1157 Query: 1162 STFSDEEVMRLAENLRKG-----------------MPIATPVFDGAKEAEIKELLKLGDL 1204 + ++ L G +ATP+F G ++++++ L Sbjct: 1158 TNRGLKDEQAALAQLNNGDIALVLKEIGMSFDDLHFKVATPIFQGVNFQDLQDIMDEAGL 1217 Query: 1205 PT---SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 G+ +L DGRTG FE+P+++G MY++KLNH+VDDK+HAR+ G YS +TQQPLGG Sbjct: 1218 KPAETHGKFKLIDGRTGLPFEKPISLGIMYIMKLNHMVDDKIHARAVGPYSKITQQPLGG 1277 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE 1321 K+Q GGQRFGEMEVWALEAYGAAY LQE+LT+KSDDV GR K Y IV G EPG+PE Sbjct: 1278 KSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNKAYAAIVKGAAFPEPGIPE 1337 Query: 1322 SFNVLLKEIRSLGINIEL 1339 SF +L KE++ L +++ Sbjct: 1338 SFKLLTKELQGLALSVSF 1355 >UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax=Mycoplasma gallisepticum RepID=RPOB_MYCGA Length = 1390 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 347/1089 (31%), Positives = 566/1089 (51%), Gaps = 110/1089 (10%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 K +R+D+ K + L IQ++++++F+E++ LE S FPI+S +G Sbjct: 12 YSPKVVRRDYSKVHNKYNPLNLPGIQVNAYKQFLEKE------LEEIIGSYFPIKSPNGK 65 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA---PEGTVKDIKEQEV 122 +++ ++ +P +E TY A L V L LV ++ K + + Sbjct: 66 YSVEFHGMKILDPQITKEEASAESKTYDASLYVNLSLVNHQTGTVKKISKKSAKSKAEGI 125 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF-DSDKGKTHSSGKV---LYNARIIP 178 Y +IPLMT+NG F++NG E+ +V+Q+ RSPG + + + K +S K Y + P Sbjct: 126 YFADIPLMTENGAFIVNGIEKFVVAQIVRSPGAYILNKSQVKLSNSRKRNQEGYICEVFP 185 Query: 179 YRGSWLDFEFDPKDNLFVRIDR------RRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 +G+ + F + + R + T +L+A + +I ++F Sbjct: 186 SKGTLMLFYIAENKDFVQAVVRDVGGESAKVFSITTLLKAFGLSEIKIKEIFNNNDYILR 245 Query: 233 RDNKLQM-------ELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 E +L + S I + +++ + +L ++ +L+ Sbjct: 246 SLESEFYNEKQILNEADIAQLIRDIESDRISKVKSLPIDQKWKNLVLDWYKLNQEKQELL 305 Query: 286 EVP----------------------------------------------VEYIAGKVVAK 299 E I+ + + Sbjct: 306 NSSNPNPTKIESLNTHIGVVLRKLICEKAAKHVIQELSISTRSLDNVSQKEEISYQSILL 365 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE---TLRVDPT 356 + + + +A + L ++S+ ++R DLD I + L+ Sbjct: 366 QHFFQKKRYDLSSAGRHKFVRKL-RVSERLYQRTIAQDIKDLDGNVVIKQGTLMLKEQLD 424 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE-EIE 415 + + + +++ + E + + E + ++ R + + + + E Sbjct: 425 LFKRLSKEKRLDIIKQIDFINPELNTQFTDVNTYEEVQIYVNNDLRNETTQIIGIDGSNE 484 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 L+ D+I ++ ++++ G DDIDHLGN+R++ + E+ +++ + G++R+E+ + Sbjct: 485 SIETLTLADLISIVSYIVNLPFNIGLYDDIDHLGNKRLKLINELLKSKVQTGMMRIEKYI 544 Query: 476 KERLSLGDLDT----------------------LMPQDMINAKPISAAVKEFFGSSQLSQ 513 K++L D + L + +IN KP +K+FF + QL+Q Sbjct: 545 KDKLQTADGNNKLADQDAENDPDSDLGTKSSNDLTVKSVINPKPFQIVIKDFFNTHQLTQ 604 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 F+DQ NPLSE+T+KRRISA+GPGG++RE ++RDVH +HYGR+CPIETPEG NIGLI Sbjct: 605 FLDQQNPLSELTNKRRISAMGPGGISREDPNLDIRDVHYSHYGRICPIETPEGMNIGLIM 664 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD--EEGHFVE 631 SL+ YA ++ GFL TPY KV +G +TD++ +L+A+ E Y+IA+A+S +D ++G Sbjct: 665 SLAFYATIDKNGFLMTPYLKVENGKITDKVEHLTALREDEYIIAEASSYMDVAKDGTINN 724 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 + + R + L+ QVDY+DVS +QVVSV ASLIPFLE+DD++RALMGANMQRQA P Sbjct: 725 EKIIARYRSSQDLYDPKQVDYIDVSPKQVVSVAASLIPFLENDDSSRALMGANMQRQATP 784 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 L+ PLVGTG+E +A DSG+ AK G V YVDAS+I +K +++ Y Sbjct: 785 LLKPYSPLVGTGVEYKIAQDSGMLVTAKNPGTVTYVDASKITVKGEDNKSTD-------Y 837 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 NL K+ +SN+NTC NQ P V++G+ +E LADGPS GELALGQN+ V F W+GYN Sbjct: 838 NLLKFVKSNKNTCYNQSPIVAVGDKIETNQALADGPSMKNGELALGQNVLVGFTTWSGYN 897 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 +ED++++S+R+ ++D +++IHI E TK G EEIT DIPN+ E+A LDE G++ Sbjct: 898 YEDAVIISDRLFKDDVYSSIHIDEYTIECLRTKNGDEEITRDIPNISESAKRYLDEEGVI 957 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 +GAEV GDILVGK +PKG+ +LTPEEKL++AI G+K V++SSL+VPNG G V + Sbjct: 958 MVGAEVKEGDILVGKTSPKGQVELTPEEKLIQAILGDKVKQVRESSLKVPNGGDGIVAGI 1017 Query: 932 QVFT-RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 + F+ +G E + LE+ ++ + Q +K + G I ++ + + D Sbjct: 1018 KRFSIANGDELEDDVLELVKVYVVQKRKIQIGDKVAGRHGNKGIISKIVAQEDMPHLE-D 1076 Query: 991 KLPRDRWLE 999 P D L Sbjct: 1077 GTPLDILLN 1085 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 183/499 (36%), Positives = 266/499 (53%), Gaps = 35/499 (7%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV +G ++ L G GE L + +L + +D+ + V Sbjct: 856 IVAVGDKIETNQALADGPSMKNGELAL--GQNVLVGFTTWSGYNYEDAVIISDRLFKDDV 913 Query: 929 -----IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 ID + + + + ++ K +E ++ G + +LV Sbjct: 914 YSSIHIDEYTIECLRTKNGDEEITRDIPNISESAKRYLDEEGVIMVGAEVKEGDILVGKT 973 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 +++ P ++ ++ L D+ KQ + L KR I GD+L Sbjct: 974 SPKGQVELTPEEKLIQAILGDKVKQVRESSLKVPNGGDGIVAG----IKRFSIANGDELE 1029 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 VL++VKVY+ KR+IQ GDK+AGRHGNKG+ISKI EDMP+ E+GTP+DI+LNPLGV Sbjct: 1030 DDVLELVKVYVVQKRKIQIGDKVAGRHGNKGIISKIVAQEDMPHLEDGTPLDILLNPLGV 1089 Query: 1104 PSRMNIGQILETHLGMAA--------------KGIGDKINAMLKQQQEVAKLR-----EF 1144 PSRMNIGQI E HLG AA K + D+++ + ++ + E Sbjct: 1090 PSRMNIGQIFELHLGYAARELAKAKLIEACFDKKLADQLDTVFGLEKSKTQSLIKNLVEH 1149 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK-GMPIATPVFDGAKEAEIKELLKLGD 1203 ++ + + D + +L IATPVF+G ++K ++ Sbjct: 1150 MKSIGVTSLAQTKNRVRTIDIDIVLKQLGLTYDDLAFKIATPVFEGVNMEDLKAIMSEAG 1209 Query: 1204 LPTS---GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 + G+ +L DGRTGE FE+P++VG MYMLKL+H+VDDK+HAR+ G YS +TQQPLG Sbjct: 1210 IDPDKTEGKFKLIDGRTGEPFEKPISVGIMYMLKLDHMVDDKIHARAVGPYSKITQQPLG 1269 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP 1320 GK+Q GGQRFGEMEVWAL+AYGAA+ L+E+LT+KSDDV GR Y IV G EPG+P Sbjct: 1270 GKSQNGGQRFGEMEVWALQAYGAAHNLREILTIKSDDVRGRNMTYNAIVKGLSIPEPGVP 1329 Query: 1321 ESFNVLLKEIRSLGINIEL 1339 ESF +L KE++ LG+ + + Sbjct: 1330 ESFKLLTKELQGLGMTLNV 1348 >UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax=Mycoplasma penetrans RepID=RPOB_MYCPE Length = 1375 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 366/1057 (34%), Positives = 563/1057 (53%), Gaps = 94/1057 (8%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 K +R+D+ K + + P LL++Q ++F KFI+ + LE +S+FPI+S G Sbjct: 12 SKYVLRRDYSKIEKNFNEPNLLNLQKNAFHKFIDTE------LEGTIKSIFPIKSIGGRY 65 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE-----QE 121 L+Y+ +L +P +E + G TY PL V L +V E + T K K Sbjct: 66 SLEYIGMKLEKPKRSEKEARNEGKTYDRPLYVDLAIVDNESGEVKKTTKSSKNKASNTDG 125 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF-DSDKGKTHSSGKVL---YNARII 177 ++ IP++T+ GTF++NG E+ ++SQ+ RSPG + + K +S K + Y I+ Sbjct: 126 IFFASIPMITEKGTFIVNGIEKFVISQIVRSPGAYILTKSQIKLSNSRKRIQEGYICEIL 185 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRR-------RKLPATIILRALNYTTEQILDLFFEKVIF 230 P +G+ L F F ++ F+++ R +P T L+AL E+IL++F Sbjct: 186 PAKGT-LFFIFMAENKDFIQVMFRDAIGESTHTIPITAFLKALGLNKEEILNIFANHKSI 244 Query: 231 ------EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 EI + K E + + K R + ++ + + + Sbjct: 245 KNSLDNEIYNEKDVFETDELINLRKNLNSSDSNRSYGVDTKLRELFKKYSSLKSQLEAEG 304 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + +V+ +++ +L+ ++ + +++ N Sbjct: 305 KNAEKQKELNEVINNIISEKAAKDLVINLSISTKNIDSKFRLSNKETTYQSIIYNHFFSN 364 Query: 345 PYI-----------SETLRVDPTNDRLSA--LVEIYRM-------------MRPGEPPTR 378 + + R+ A L +I + + T+ Sbjct: 365 KSFDLSKAGRFKMARKMRLSERLYQRVLAEDLKDINGKVVIKKNTLIQKHELDTIKQLTK 424 Query: 379 EAAESLFENLFFSEDRYDLSAVGRM-KFN------------RSLLREEIEGSGILSKDDI 425 E + N+ E ++ V + K N + + LS DI Sbjct: 425 EGKLGIVHNVNLDERISKMANVVKYEKINVYQDNDSQDEFIPIIGTDTSLDKPTLSISDI 484 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD-- 483 + + +I++ G DDIDHLGN+R++ + E+ + + + GLVR+E+ + ++L++ D Sbjct: 485 LSITSYVINLDYDIGFYDDIDHLGNKRLKLIDELLKTRAQAGLVRIEKFINDKLAIADGA 544 Query: 484 ------------LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 +L + +IN KP + KEFF S QL+QF+DQ NPL+E+T+KRRIS Sbjct: 545 NKSQEQSEEQEPKKSLTVKSIINTKPFQISFKEFFNSHQLTQFLDQQNPLAELTNKRRIS 604 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 A+GPGG++RE ++RDVH +HYG++CPIETPEG NIGLI SL+ YA T+E GFL TPY Sbjct: 605 AMGPGGISREDPNLDIRDVHYSHYGKICPIETPEGMNIGLIMSLATYASTDENGFLITPY 664 Query: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 R V +GV+TDEI +L+A+ E Y+IA +N N+++ F ED V CR + F VD Sbjct: 665 RIVKNGVITDEIRWLTALSEDEYIIACSNLNVEKN-KFKEDKVLCRYRSSWEFFDVKDVD 723 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 ++D+S +QVVS+ AS IPFLE+DDANRALMGANMQRQA P + P+VGTG E +A D Sbjct: 724 FIDISPKQVVSIAASSIPFLENDDANRALMGANMQRQATPLISPIAPIVGTGNEYKIAHD 783 Query: 712 SGV--TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 SG+ ++ G V YVD I IK +E +Y LTK+ +SNQNTC NQ+P Sbjct: 784 SGMAAVYDGEKDGTVSYVDGGTIKIKSGSEE--------KVYELTKFNKSNQNTCNNQVP 835 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 VS+GE V +G +ADGP+ GELALGQN+ VAF W+GYN+ED+I++S+R+ ED FT Sbjct: 836 IVSVGEKVTKGTTIADGPAMSNGELALGQNVLVAFTTWSGYNYEDAIILSKRLFMEDIFT 895 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 +IHI E + TK G EEIT DIPNV E++ LD+ GI+ +GAEV GD+LVGK++P Sbjct: 896 SIHIVEYSVDCLKTKNGDEEITRDIPNVSESSKKYLDDEGIIMVGAEVKEGDVLVGKISP 955 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDKRALEI 948 KG+ +LT EEKLL+AIFG+K+ + K++SL+VP+G GTV V+ F D E + +E Sbjct: 956 KGQVELTSEEKLLQAIFGDKSKNHKETSLKVPHGGEGTVAMVKRFKVEDDYELNADVIEQ 1015 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 ++ + Q +K + G I ++ + Sbjct: 1016 IKVYVVQKRKIQIGDKMAGRHGNKGIISKIVPVEDMP 1052 Score = 359 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 188/537 (35%), Positives = 279/537 (51%), Gaps = 42/537 (7%) Query: 842 DTKLGPEEITADIPNVGEAALSKLDES-GIVYIGAEVTGGDILV-GKVTPKGETQLTPEE 899 K G EE ++ ++ + + IV +G +VT G + G GE L + Sbjct: 807 KIKSGSEEKVYELTKFNKSNQNTCNNQVPIVSVGEKVTKGTTIADGPAMSNGELAL--GQ 864 Query: 900 KLLRAIFGEKASDVKDS---SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 +L A + +D+ S R+ T I + ++ D ++ EI + Sbjct: 865 NVLVAFTTWSGYNYEDAIILSKRLFMEDIFTSIHIVEYSVDCLKTKNGDEEITRDIPNVS 924 Query: 957 KKDLS--EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL 1014 + ++ I+ G + VLV +++ ++ L+ D+ K ++ L Sbjct: 925 ESSKKYLDDEGIIMVGAEVKEGDVLVGKISPKGQVELTSEEKLLQAIFGDKSKNHKETSL 984 Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 + KR K+ +L V++ +KVY+ KR+IQ GDKMAGRHGNKG Sbjct: 985 KVPHGGEGTVA----MVKRFKVEDDYELNADVIEQIKVYVVQKRKIQIGDKMAGRHGNKG 1040 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK------- 1127 +ISKI P+EDMP+ E+GT +DI+LNPLGVPSRMNIGQILE HLG+A K + Sbjct: 1041 IISKIVPVEDMPHLEDGTTIDIMLNPLGVPSRMNIGQILELHLGLAMKKLTLSKVLELYY 1100 Query: 1128 -----------INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + + + K E I + + + + + F + + Sbjct: 1101 DKKPASDFSLWFGIHEEASRNLIKNLEKILNEKQIKSLDQANKEFTDFDLSLALSRSGIS 1160 Query: 1177 RKGMPI--ATPVFDGAKEAEIKELLKLGDLPT---------SGQIRLYDGRTGEQFERPV 1225 R+ + ATPVF+G ++KE + + SG+ L DGRTGE F+ V Sbjct: 1161 REKLIYKTATPVFEGVNRTDLKEAMTEAGIDPINGKLGEGKSGKFNLIDGRTGEYFDGEV 1220 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 +VG MYMLKL+H+VDDK+H+R+ G YS +TQQPLGGK+Q GGQRFGEMEVWALEAYGAA+ Sbjct: 1221 SVGIMYMLKLDHMVDDKIHSRAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAH 1280 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 L+E+LT+KSDDV GR Y I+ G E G+PESF +L K+++ LG+ + + E Sbjct: 1281 NLRELLTIKSDDVKGRNNTYNAIIKGKPIPESGLPESFKLLTKQLQGLGLQVSITKE 1337 >UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Tax=Mycoplasma RepID=RPOB_MYCH2 Length = 1220 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 368/1024 (35%), Positives = 537/1024 (52%), Gaps = 74/1024 (7%) Query: 1 MVYSYTEKK----RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV 56 M + Y K R+ +G + L+ P L +SF F+ G+ AF + Sbjct: 1 MNHIYKLKSYGIGTDRRFYGVANKTLETPDFLDPVRESFDWFLH------VGIPEAFDRI 54 Query: 57 FPIQSYSGNSELQY--VSYRLGEPVFD---VQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 FPI S +G E+ + S R+ +P + ++E +I+G TYSA + V L V E Sbjct: 55 FPIVSANGKLEISFRRGSLRVEKPENEYLAIREAKIKGKTYSARVYVTLVKVHSED---- 110 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 +++EQE+ + E P MT GTF+ING E+V+VSQL RSPGV F + + + Sbjct: 111 ---GEMEEQEILLAEFPFMTQGGTFIINGFEKVVVSQLIRSPGVCFRENVRNQQADD-LF 166 Query: 172 YNARIIPYRGSWLDFEFDPK----DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEK 227 IIP GSW++ D + RID+ + +P LRA+ +T E + F Sbjct: 167 NKVEIIPQLGSWMEIFHKVTGNQVDTVKFRIDKHKNIPLLSFLRAIGFTNETVRKYFGNS 226 Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 +E+ + +E R + KDD E Sbjct: 227 PEL------------------------LESIRRHKLESLEENLELIYRIVRKDDRITEEG 262 Query: 288 PVEYIAGKVVAKD-YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY 346 I + + Y STG + A + L + + G Y Sbjct: 263 LKNLIPSIIFNERRYNLASTGRFMLNAKLNLVERISQTYLAEDLVSKKNKIL--FKKGTY 320 Query: 347 ISETLR---VDPTNDRLSALVEIYRMM-----RPGEPPTREAAESLFENLFFSEDRYDLS 398 I+ L + N+ L EI + R E E F S Sbjct: 321 ITRQLALEIQEKFNNEEIPLSEIEGVDSTIYARQLEITRNENLWKRFYVAIVKVWPNKKS 380 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 + + + + L DII ++ ++ + G+ DD D L N+RI SVGE Sbjct: 381 MLQESEPVNVIATDPNLNEKTLVLSDIIAIVSYYFNLLSNLGKSDDPDSLVNKRIVSVGE 440 Query: 459 MAENQFRVGLVRVERAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 + +NQF + L ++E+ KE++S DL L + +IN KPI K FF SS+LSQFMDQ Sbjct: 441 LLQNQFLIALTKIEKNSKEKISTKSDLSQLTVKSIINNKPIYNQFKNFFNSSKLSQFMDQ 500 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 NPL E+ KR++++LGPGGL R+ A FEVRDVH THYGR+CP+ETPEG NIGLI + SV Sbjct: 501 INPLGEMASKRKVTSLGPGGLNRDTAQFEVRDVHTTHYGRICPVETPEGQNIGLILNFSV 560 Query: 578 YAQTNEYGFLETPYRKVTDGVVT-DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 +++ N+YGF+ TPY +V + +V ++H+L+A EE + AQ+ +D+ + D +T Sbjct: 561 FSRINQYGFIITPYYQVKNRIVDYSKVHWLAASEEFDKSFAQSGVEIDQNNRIIPDKLTV 620 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R + +QV+Y+DVS+ Q+ S+ AS IPFLE++DANRALMG+NMQRQAVP ++++ Sbjct: 621 RKNQTYLVLDAEQVNYIDVSSMQMTSISASAIPFLENNDANRALMGSNMQRQAVPLIKSE 680 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 PLV TG+E AVA S A G V YVDA +I+I E +I+ L + Sbjct: 681 APLVATGIEEAVARFSATNLRAAISGKVTYVDAKKIIIDDGEK--------PEIHYLRYF 732 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 +SNQ T I Q P V +G+ V++G ++ DGPSTD GELALG+N+ VAF W GYN+ED+I Sbjct: 733 EKSNQETLILQKPTVKVGDKVKKGQLICDGPSTDNGELALGKNVLVAFSTWYGYNYEDAI 792 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 ++SE++V++D FT+IHIQE R TK G + +TA+IPN + LD +GIV +G+E Sbjct: 793 IISEKLVKDDVFTSIHIQEQTIKFRSTKAGNDILTAEIPNASAKSRLHLDANGIVIVGSE 852 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVG+ +PKGE T EEKL+ AI+G+KA KD+SLRV NG GTVIDVQ+ +R Sbjct: 853 VDTGDILVGRTSPKGEDNPTAEEKLMAAIWGKKALAQKDTSLRVKNGEGGTVIDVQILSR 912 Query: 937 D-GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 D G ++ + ++ + Q +K + G + +L + + D P D Sbjct: 913 DQGDNLEEGVGMLIKILIAQKRKIKVGDKMAGRHGNKGVVSVILPVEDMPFLE-DGTPVD 971 Query: 996 RWLE 999 L Sbjct: 972 IVLN 975 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 269/1169 (23%), Positives = 445/1169 (38%), Gaps = 163/1169 (13%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ-LEKDDVKL 284 E+ + ++ + P + +F I KV V + R R+ + Sbjct: 107 HSEDGEMEEQEILLAEFP--FMTQGGTFIINGFEKVVVSQLIRSPGVCFRENVRNQQADD 164 Query: 285 IEVPVEYIAGKVVAKDYIDESTG----ELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 + VE I + + TG + + ++ LL+ L G Sbjct: 165 LFNKVEIIPQLGSWMEIFHKVTGNQVDTVKFRIDKHKNIPLLSFLRAIGFTNETV--RKY 222 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 + P + E++R L IYR++R + T E ++L ++ F+E RY+L++ Sbjct: 223 FGNSPELLESIRRHKLESLEENLELIYRIVRKDDRITEEGLKNLIPSIIFNERRYNLAST 282 Query: 401 GRMKFNRSLLREEIEGSGILSKDDI-------------------IDVMKKLIDIRNGKGE 441 GR N L E L++D + +++ +K + E Sbjct: 283 GRFMLNAKLNLVERISQTYLAEDLVSKKNKILFKKGTYITRQLALEIQEKFNNEEIPLSE 342 Query: 442 VDDIDHLGNRRIR--SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD-MINAKP- 497 ++ +D R + E +F V +V+V K L + ++ D +N K Sbjct: 343 IEGVDSTIYARQLEITRNENLWKRFYVAIVKVWPNKKSMLQESEPVNVIATDPNLNEKTL 402 Query: 498 ----ISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 I A V +F L + +++ + +KR +S A + Sbjct: 403 VLSDIIAIVSYYF---NLLSNLGKSDDPDSLVNKRIVSVGELLQNQFLIALTK------- 452 Query: 554 HYGRVCPIETPEGPNIGL---INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE 610 IE I ++ L+V + N ++ + ++ + Sbjct: 453 -------IEKNSKEKISTKSDLSQLTVKSIINNKPIYNQFKNFFNSSKLSQFMDQINPLG 505 Query: 611 E-----GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS--V 663 E + N D V D+ T + + + + + V S Sbjct: 506 EMASKRKVTSLGPGGLNRDTAQFEVRDVHTTHYGRICPVETPEGQNIGLILNFSVFSRIN 565 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 I + NR + + + + DK +G+E + R Sbjct: 566 QYGFIITPYYQVKNRIVDYSKVH-WLAASEEFDKSFAQSGVEIDQNNRIIPDKLTVRKNQ 624 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 V + V ++ M + +N+ + M ++ ++ Sbjct: 625 TYLVLDAEQVNYIDVSSMQMTSISASAIPFLENNDANRALMGSNMQRQAVPLIKSEAPLV 684 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 A G + + N+R A Y + + ++ + IH S Sbjct: 685 ATGIEEAVARFSA-TNLRAAISGKVTY-----VDAKKIIIDDGEKPEIHYLRYFEKSNQE 738 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 L ++ T V +G +V G L+ +L + +L Sbjct: 739 TLILQKPT-------------------VKVGDKVKKGQ-LICDGPSTDNGELALGKNVLV 778 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS-- 961 A + +D+ + +S ++ VFT +++ + ++ Sbjct: 779 AFSTWYGYNYEDAII-----ISEKLVKDDVFTSIHIQEQTIKFRSTKAGNDILTAEIPNA 833 Query: 962 --------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ 1013 + I+ G +LV + + ++ + + + Sbjct: 834 SAKSRLHLDANGIVIVGSEVDTGDILVGRTSPKGEDNPTAEEKLMAAIWGKKALAQKDTS 893 Query: 1014 LAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNK 1073 L + E + ++ ++ QGD+L GV ++K+ +A KR+I+ GDKMAGRHGNK Sbjct: 894 LRVKNGEGGTVIDVQILSR----DQGDNLEEGVGMLIKILIAQKRKIKVGDKMAGRHGNK 949 Query: 1074 GVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLK 1133 GV+S I P+EDMP+ E+GTPVDIVLNP GVPSRMNI G + L Sbjct: 950 GVVSVILPVEDMPFLEDGTPVDIVLNPQGVPSRMNI---------------GQVLELHLG 994 Query: 1134 QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEA 1193 + K TPVFDG K Sbjct: 995 MVAKKLK---------------------------------------TKFVTPVFDGIKIE 1015 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 IK+L ++P SG+ +L+DG +G+ FE PV+VGYMYMLKL H+VDDKMHARS G YSL Sbjct: 1016 TIKKLFDEANIPESGKFKLFDGISGQAFENPVSVGYMYMLKLLHMVDDKMHARSIGPYSL 1075 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 TQQPLGGK+Q GGQRFGEME WALE++GA L E+LT KSD++ GR +Y NI+ G Sbjct: 1076 TTQQPLGGKSQNGGQRFGEMETWALESFGATSVLSELLTYKSDNIQGRNLLYNNIISGGK 1135 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELEDE 1342 PG PESFNVL E+R L I +E+ Sbjct: 1136 IPSPGTPESFNVLAYELRGLLIKLEVHKN 1164 >UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax=Deinococcus RepID=RPOB_DEIGD Length = 1152 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 356/909 (39%), Positives = 511/909 (56%), Gaps = 43/909 (4%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDL-FFEKVIFEIRDNKLQMELVPERLRGET 250 D L R+ P + L Y L K I+++++ + +P L + Sbjct: 75 DFLEYRLGEPPYTPEECREKDLTYQAPLYAKLQLIHKDSGLIKEDQVFLGDLP--LMTDD 132 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 SF I +V + + R + K K+ + + + E G ++ Sbjct: 133 GSFVINGADRVVISQIHRSPGVYFTSSYKGIKKMYTAAIIPMPKRGPW--IELEFNGGVL 190 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT--NDRLSALVEIYR 368 + + L G+ + L D + + AL+ ++ Sbjct: 191 EMKVNKRKFPVSLLLRVLGYDDAQLKALFTEFDPAA---ELPEDKSAGMNPDEALLRLFT 247 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD---- 424 ++RPG+PP R+ A L RYDL GR K N L + +L+ +D Sbjct: 248 VLRPGDPPKRDKAIQYLYGLLADPKRYDLGEPGRFKMNTKLGTR-RQDRTLLTFEDGRFG 306 Query: 425 ---IIDVMKKLIDIRNGK-----------------GEVDDIDHLGNRRIRSVGEMAENQF 464 ++D ++ L+ ++ G DDIDHLGNRR+R+VGE+ +Q Sbjct: 307 DAGLVDTIRYLMALQQGLETVTMGADEDGVAIEVPVTEDDIDHLGNRRVRTVGELLADQL 366 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 RVG+ R+ R V+ER+ LG+ D P ++N +PI AA++EFFG SQLSQF DQ NPLS++ Sbjct: 367 RVGMGRMARGVRERMLLGNPDAATPTKLVNNRPIVAAMREFFGRSQLSQFKDQTNPLSDL 426 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 HKRRISALGPGGLTRERAGF+VRDVH THYGR+CPIETPEG NIGLI+SLS YA+ N+ Sbjct: 427 RHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPIETPEGANIGLISSLSSYAKVNDL 486 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 GF+E PYR+V DG VTD++ Y++A E YVIAQANS L+ +G F E+ V R KG+ L Sbjct: 487 GFIEAPYRRVVDGRVTDDVVYMTADIEDRYVIAQANSPLNPDGTFAEERVLARKKGDPML 546 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 ++ +VD+MDVS +Q+VS+ SLIPFLEHDDANRALMG+NMQ QAVP +RAD P VGTG+ Sbjct: 547 YAPTEVDFMDVSPKQIVSINTSLIPFLEHDDANRALMGSNMQSQAVPLVRADSPAVGTGV 606 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED--EMYPGEAGIDIYNLTKYTRSNQN 762 E V DSG + ++ G V YVDA I + + ED ++ + + + L ++TRSNQ Sbjct: 607 EERVVTDSGTSVISDVTGRVTYVDARAIQVTLTEDAPQIGLVKGNVRTFELVRFTRSNQG 666 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 T ++Q P VS+G+ V G V+ADGP++D G LALGQN+ +A MP++G+NFED+I +SE + Sbjct: 667 TNLDQHPIVSVGDEVVPGQVIADGPASDQGRLALGQNITIAIMPFDGFNFEDAICISEGL 726 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 V++D +T++HI++ +RDTKLGPE+IT DIP + EAAL LDE GIV +GAEV GDI Sbjct: 727 VRKDFYTSVHIEKDEIEARDTKLGPEKITRDIPGLSEAALRDLDEDGIVRVGAEVKPGDI 786 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT--RDGVE 940 LVGK + KGE++ TPEE+LLR+IFGEKA +VKD+SLRV +G G V+ F +GV+ Sbjct: 787 LVGKTSFKGESEPTPEERLLRSIFGEKAREVKDTSLRVQSGQGGIVVKTVRFRRGDEGVD 846 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 E+ + + Q ++ + G + +L + + D P D + Sbjct: 847 LKPGVREMVRVYVAQKRQLQVGDKVANRHGNKGVVSKILPPEDMPYLE-DGTPVD-LVFN 904 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 L + N + L E+ +K + A + V ++RR Sbjct: 905 PLGVPSRMNLGQILETHLGEVARLTGQKFVTPVF--DSATEEAIKEMLEVAAAERLQRRK 962 Query: 1061 QPGDKMAGR 1069 G ++ R Sbjct: 963 DEGFELDKR 971 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 193/505 (38%), Positives = 283/505 (56%), Gaps = 32/505 (6%) Query: 850 ITADIPNVGEAAL-SKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFG 907 T ++ + + LD+ IV +G EV G ++ G + +G L + + AI Sbjct: 653 RTFELVRFTRSNQGTNLDQHPIVSVGDEVVPGQVIADGPASDQGRLAL--GQNITIAIMP 710 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS------ 961 + +D+ + + G ++ +T +EKD+ ++ ++ +D+ Sbjct: 711 FDGFNFEDA-ICISEG----LVRKDFYTSVHIEKDEIEARDTKLGPEKITRDIPGLSEAA 765 Query: 962 ----EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 +E I+ G + +LV + + P +R L ++ ++ + L Q Sbjct: 766 LRDLDEDGIVRVGAEVKPGDILVGKTSFKGESEPTPEERLLRSIFGEKAREVKDTSLRVQ 825 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + + + +G DL PGV ++V+VY+A KR++Q GDK+A RHGNKGV+S Sbjct: 826 SGQGGIVVKTVRFRR---GDEGVDLKPGVREMVRVYVAQKRQLQVGDKVANRHGNKGVVS 882 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 KI P EDMPY E+GTPVD+V NPLGVPSRMN+GQILETHLG A+ G K + Sbjct: 883 KILPPEDMPYLEDGTPVDLVFNPLGVPSRMNLGQILETHLGEVARLTGQKFVTPVFDSAT 942 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 ++E ++ A ++++ D D+ + + K I+ P D A Sbjct: 943 EEAIKEMLEVAAAER--LQRRKDEGFELDKREQEVLDRAGKLGVISPPNGDYAAAQ---- 996 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L +G+ LYDGRTGE PV VG MY++KL H+V+DK+HARSTG YSL+TQQ Sbjct: 997 ----MQLARTGKSVLYDGRTGEPISGPVVVGTMYVMKLYHMVEDKLHARSTGPYSLITQQ 1052 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGKAQFGGQRFGEMEVWALEAYGAA+TLQEMLT+KSDD++GR Y++IV G Sbjct: 1053 PLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTIKSDDIDGRDAAYQSIVKGEEVSGS 1112 Query: 1318 GMPESFNVLLKEIRSLGINIELEDE 1342 +PESF VL+KE+ SLG+++E+ D Sbjct: 1113 TIPESFKVLVKELHSLGLDVEVLDN 1137 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 92/260 (35%), Positives = 147/260 (56%), Gaps = 23/260 (8%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPI 59 S T++K + FG+ +V+ +P L +Q++SF+ F++ D GL++AFR VFPI Sbjct: 2 SLTDQKPRIERFGEITEVIPLPNLTEVQVNSFKAFLQADKAPDERDDTGLQSAFREVFPI 61 Query: 60 -QSYSGN---SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 ++ G L ++ YRLGEP + +EC+ + +TY APL KL+L+ + Sbjct: 62 DETEKGRSTGLVLDFLEYRLGEPPYTPEECREKDLTYQAPLYAKLQLIHKDS-------G 114 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 IKE +V++G++PLMTD+G+FVING +RV++SQ+HRSPGV+F S K +Y A Sbjct: 115 LIKEDQVFLGDLPLMTDDGSFVINGADRVVISQIHRSPGVYFTSSYKGI----KKMYTAA 170 Query: 176 IIPY--RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 IIP RG W++ EF+ L ++++ +RK P +++LR L Y Q+ LF E Sbjct: 171 IIPMPKRGPWIELEFNG-GVLEMKVN-KRKFPVSLLLRVLGYDDAQLKALFTEFDPAAEL 228 Query: 234 DNKLQMELVPERLRGETASF 253 + P+ + Sbjct: 229 PEDKSAGMNPDEALLRLFTV 248 >UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax=Bigelowiella natans RepID=RPOB_BIGNA Length = 1099 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 332/1205 (27%), Positives = 545/1205 (45%), Gaps = 136/1205 (11%) Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT 216 F + K + + I LD + K L + LP + + Sbjct: 7 FFPNLLKLQRKSFLTFLKYGIKKEIKKLDITKNKKKLLVYPNLFQLNLPTYTCNECVITS 66 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 +L + +D + L + +F + +V + + R + + Sbjct: 67 KTYNCELVIPIRLISYKDEIEWITLTNIPIMTNKCNFITNGSPRVIMSQITRAPGIYYHK 126 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 ++ + IA + + + + L L G + + Sbjct: 127 ENENTY-----YADIIAERGNWLRIEIDKKNNIWMKVKKVPKVPALMFLQALGVTKSNLI 181 Query: 337 FTNDLDHGPYISETLRVDPTNDRLSAL--VEIYRMMRP--GEPPTREAAESLFENLFFSE 392 L P ++ + + AL +E+Y + + + + F + Sbjct: 182 ---KLLKYPIPNQNHNLGNFKSQKEALEKIELYSQLESSINSRNLKNQNKITIFDRFMNP 238 Query: 393 DRYDLSAVGRMKFNRSLL-REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR 451 YDL GR++ N+ EE L+ D I + L+ I+ E DDID+L N+ Sbjct: 239 KYYDLGTRGRIQINKKFNNIEETIQHSTLTSKDFILAVHFLLKIKYKIEETDDIDNLKNK 298 Query: 452 RIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL 511 R++ GE+ ++QF +G++R+++ VK++L + L ++ ++ PI+ + EFFG + L Sbjct: 299 RVKIAGELIQSQFGIGILRLQKYVKDKLG-NIKNNLHLTNIFSSTPINTTLAEFFGVNPL 357 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 SQFMD+ NPL+ +THKRR+S+LG GG+ R+ A +R +HPT YGR+CPIETPEG N GL Sbjct: 358 SQFMDEVNPLATLTHKRRLSSLGIGGVNRDTATLTIRSIHPTLYGRICPIETPEGKNAGL 417 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHF 629 +NS +++A+ N G +ETP+ +V +G + E I+YLSA +E I + G Sbjct: 418 VNSFALFAEINSEGLIETPFFRVCNGRILYEMGINYLSANQEDKSNIVPFDIKKSRIGFL 477 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 ++ + R K + S+ +VD++ +S Q++SV SLIPF+EH+DANR LMG+NMQRQA Sbjct: 478 SKNKIAARIKQQFKEVSKKKVDFISISQLQMLSVATSLIPFMEHNDANRVLMGSNMQRQA 537 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 VP L+ + LVGTG+E + D + G + Y+ +I I +E + Sbjct: 538 VPLLKTECCLVGTGLETKIFFDLQDNVKSPPNGFISYLSLKKITISNIRNEHKSFNFKSN 597 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 TCI S + L Sbjct: 598 PLETI--------TCI-------------------KSKSRNFNRLK-------------- 616 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YN +D + S+ ++ I R+ K+ + N G ++++L + Sbjct: 617 YNLKDLLTNSKE--------SLKITNYMSYVREQKIQYYIKQYNSSNQGTCSVNRLTLN- 667 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 G + + L+ G + E L + +F S + N V+ Sbjct: 668 ---EGQFIIKKNPLIS-----GLSSCRNELALGKNLFVGYI------SWKGYNFEDAIVL 713 Query: 930 DVQ-----VFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLV 980 + Q ++T +EK + ++ + + +D+ + L+ +I + + Sbjct: 714 NEQLVINNIYTSTHLEKFETEIKKNKENSEIITRDIKNISFLNKKNLDKNGIIKIGSRVF 773 Query: 981 AGGVEAEKLDKL------PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR 1034 + + KL + P + L L + + L + + Sbjct: 774 SDDILVGKLLPIETRILSPYRKLLYEILQKQNDHYRNTSLRVPKYKRGRITFVDYIKDKG 833 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 KI + ++ LK +K++L R IQ GDK++GRHGNKGVISKI I++MPY +G P+ Sbjct: 834 KIKKKTEILKD-LKTIKIHLMQNRLIQIGDKISGRHGNKGVISKILKIQEMPYLNDGIPL 892 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 DI+LNPLGVPSRMNIGQ+LE LG++ + + + + G + Sbjct: 893 DILLNPLGVPSRMNIGQVLECLLGLSCFYLQRRFKVIPFDES--------------FGFE 938 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 V + S + L G+ R++D Sbjct: 939 VSRNFIYSNLYFSNIKTGNN-------------------------WLLHPYYPGKNRIFD 973 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 +G F++P+T+G Y+LKL HLV++K+HARSTGSYSLVTQQPL GK++ GGQR GEME Sbjct: 974 SYSGLPFDQPITIGKAYILKLIHLVEEKVHARSTGSYSLVTQQPLKGKSKKGGQRVGEME 1033 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 VWALE YGAAYTL E+LTVKSDD+ R K+ +I++ + G E+F VL++E++SL Sbjct: 1034 VWALEGYGAAYTLHEILTVKSDDIKSRQKVLTSILNSETI-KFGTTETFKVLIRELQSLC 1092 Query: 1335 INIEL 1339 +NI+ Sbjct: 1093 LNIQF 1097 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 75/354 (21%), Positives = 132/354 (37%), Gaps = 34/354 (9%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 L P LL +Q SF F++ YG++ + + I + ++L P Sbjct: 4 TPLFFPNLLKLQRKSFLTFLK------YGIKKEIKKLD-ITKNKKKLLVYPNLFQLNLPT 56 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 + EC I TY+ L + +RL+ Y+ E + + + IP+MT+ F+ N Sbjct: 57 YTCNECVITSKTYNCELVIPIRLISYKDEI----------EWITLTNIPIMTNKCNFITN 106 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 G+ RVI+SQ+ R+PG+++ H + Y A II RG+WL E D K+N+++++ Sbjct: 107 GSPRVIMSQITRAPGIYY-------HKENENTYYADIIAERGNWLRIEIDKKNNIWMKVK 159 Query: 200 RRRKLPATIILRALNYTTEQILDLF---FEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 + K+PA + L+AL T ++ L + + K Q E + + I Sbjct: 160 KVPKVPALMFLQALGVTKSNLIKLLKYPIPNQNHNLGNFKSQKEALEKIELYSQLESSIN 219 Query: 257 ANGKVYVEKGRRITARHIRQLEKDD-------VKLIEVPVEYIAGKVVAKDYIDESTGEL 309 + K + K E I + + L Sbjct: 220 SRNLKNQNKITIFDRFMNPKYYDLGTRGRIQINKKFNNIEETIQHSTLTSKDFILAVHFL 279 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 + D + L K L + G + D + + L Sbjct: 280 LKIKYKIEETDDIDNLKNKRVKIAGELIQSQFGIGILRLQKYVKDKLGNIKNNL 333 >UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Tax=Mycoplasmataceae RepID=RPOB_UREP2 Length = 1434 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 360/1128 (31%), Positives = 558/1128 (49%), Gaps = 145/1128 (12%) Query: 2 VYSYTEK----KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF 57 +YTEK K +R+D+ K + P LL IQ++SF++F+E+D L+ S+F Sbjct: 4 NKNYTEKFITDKVMRRDYSKIKSNFEGPNLLEIQVESFKRFMEKD------LKEVISSIF 57 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 P++S G L + ++ +P D C+ G T+ P+ + L L + ++ Sbjct: 58 PLKSPQGKYTLAFKGLKIKQPTKDESACRDEGKTFETPIYIDLELTDNYTGEVKRAQRNT 117 Query: 118 K--EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF-DSDKGKTHSSGKVLYN- 173 K E +Y+G IP MT+ GTFVING E+ ++SQ+ RSPG++ K + S K L+ Sbjct: 118 KTGEDGIYLGAIPKMTEKGTFVINGIEKFVISQIVRSPGIYVLGKSSIKLNGSRKRLFEG 177 Query: 174 --ARIIPYRGSWLDFEFDPKDNLFVRI-------DRRRKLPATIILRALNYTTEQILDLF 224 I P +G+ L + PKD ++I D + T +L+A T+ +IL +F Sbjct: 178 KICEIYPSKGT-LMLGYIPKDRHNIQIVARDSSGDNAQTFSVTTLLKAFGLTSAEILKIF 236 Query: 225 FEKVIFEIRDN--KLQMELVPERLRGETASFDIEANGKVYVEKGRR--ITARHIRQLEKD 280 + K E + E + F I ++ EK R + + + Sbjct: 237 NNEKEIRESLEIEKYAPEYIFENSQENEIIFKIYSDAHDIHEKADRRESNNKLKEEYIEQ 296 Query: 281 DVKLIEVPVEYIAGKVVAKDYID----------------------ESTGELICAANMELS 318 L+ + I V D ID + E+I E + Sbjct: 297 GSPLLSKLKQLIFNYVEKNDEIDALLHENKDVEDASFIKNNKKLYDEREEIINCIISEKA 356 Query: 319 LDLLAKLSQSGHKRIETL----------------------FTNDLDHGPYISETLRVDPT 356 + +L K IETL + + + L + Sbjct: 357 AKDIVELLGINIKNIETLRHLGKASYQIALQQHFFNKRLYDISSAGRYKFEKKLLLSERL 416 Query: 357 NDRLSALVEIYRM---MRPGEPPTREAAESLFENLFFSEDR------------------- 394 ++ A I + + P + + L + ++ Sbjct: 417 YQKVIANDIIDKKNNILIPKDTLITKEHIELIKKESRDKNIKWTKKINLLPTALESEIEQ 476 Query: 395 -YDLSAVGRMKFNR-------SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 + ++ K N + L+ D++ + ++ GE DDID Sbjct: 477 FLEYESIAVYKDNDLRDETTEIVGLASGCKLQTLTVADLVATTSYIYNLNYEIGEFDDID 536 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD--------------- 491 HLGN+R++ + E+ + + R+E+ + E+L++ D + + Sbjct: 537 HLGNKRLKLIHELLRARIATSMARIEKFINEKLAISDGSSNNITNVNDKGIDTELDREIE 596 Query: 492 -----------------MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 +IN K + VK+FF S QL QF+DQ NPL+E+T+KRRISA+G Sbjct: 597 ESDMSDEEKKKAISVKSIINTKQFQSLVKDFFNSHQLIQFIDQQNPLAELTNKRRISAMG 656 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGG++RE ++RDVH +HY R+CPIETPEG NIGLI SL+ A+ +E GF+ PY V Sbjct: 657 PGGISREDPNLDIRDVHHSHYSRICPIETPEGMNIGLIMSLASLAKVDENGFIVAPYYVV 716 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 DGVV ++ YL+A E+ NY+IA+++ LDE +++ V R +G + LFS ++VD++D Sbjct: 717 EDGVVKEDYKYLTAHEDDNYIIAESSVQLDENKRILDEQVVARYRGSTGLFSPNEVDFID 776 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 + +QVVS+ AS IPF+E+DD RALMG+NMQRQA P ++ P+VGTG E +A DSG+ Sbjct: 777 IVPKQVVSIAASAIPFIENDDGARALMGSNMQRQATPLIKPYAPIVGTGTEFKIAHDSGM 836 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 VAK GVV++VD+ +I+I+ + D++ D Y L KY +SNQ+TC NQ+P V +G Sbjct: 837 AVVAKNDGVVEFVDSQKIIIRNDNDKL-------DDYKLIKYRKSNQDTCNNQIPIVKVG 889 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + V + + + DGP+ GELALG+N+ V + W GYNFED+I++SER+V +D FT+IHI Sbjct: 890 QRVHKSETIGDGPAMQNGELALGRNILVGYTTWRGYNFEDAIIISERLVDQDVFTSIHID 949 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 E TK G EEIT D+PNV + A LD GIV +GAEV GD+LVGK TP+G + Sbjct: 950 EHTIQCMKTKNGDEEITRDMPNVSDTAKRFLDNQGIVLVGAEVHEGDVLVGKTTPRGNVE 1009 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT---RDGVEKDKRALEIEEM 951 PE++LL+ IFG+K+ VKDSSL+V +G G V V+ +G E +EI ++ Sbjct: 1010 TAPEDRLLQTIFGDKSKTVKDSSLKVKHGQEGIVAAVKRIKSSDENGSELPDDVIEIIKV 1069 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + Q +K + G + V+ + D P D L Sbjct: 1070 YIVQKRKIQVGDKMAGRHGNKGIVSKVVPIQDMPF-LKDGTPLDIMLN 1116 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 184/497 (37%), Positives = 271/497 (54%), Gaps = 27/497 (5%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV- 928 IV +G V + +G +L +L + + +D+ + V V Sbjct: 885 IVKVGQRVHKSET-IGDGPAMQNGELALGRNILVGYTTWRGYNFEDAIIISERLVDQDVF 943 Query: 929 ----IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 ID + + + + K + I+ G VLV Sbjct: 944 TSIHIDEHTIQCMKTKNGDEEITRDMPNVSDTAKRFLDNQGIVLVGAEVHEGDVLVGKTT 1003 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 ++ P DR L+ D+ K + L ++ + ++ + G +L Sbjct: 1004 PRGNVETAPEDRLLQTIFGDKSKTVKDSSLKVKHGQEG--IVAAVKRIKSSDENGSELPD 1061 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 V++I+KVY+ KR+IQ GDKMAGRHGNKG++SK+ PI+DMP+ ++GTP+DI+LNPLGVP Sbjct: 1062 DVIEIIKVYIVQKRKIQVGDKMAGRHGNKGIVSKVVPIQDMPFLKDGTPLDIMLNPLGVP 1121 Query: 1105 SRMNIGQILETHLGMAAKGIGDK--INAMLKQQQEVAKLREF------IQRAYDLGADVR 1156 SRMNIGQILE HLG AA IG K I + Q + F ++ Y+ +++ Sbjct: 1122 SRMNIGQILELHLGYAAAEIGKKQLIQIAIDQLGYEKYISLFGINEIIAKKLYENISNLI 1181 Query: 1157 QKVDLSTFSDEEVMRLAENLRK--------GMPIATPVFDGAKEAEIKELLKLGDL---P 1205 + D +++ + L++ G+ I+TPVFDGA +I ++ ++ Sbjct: 1182 KHKQAKQAKDIDLIDVTIILKELGLSYDDIGIKISTPVFDGANHDDIVSIMNEANIDIEN 1241 Query: 1206 TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 G+ LYDGRTGE F+ ++VG YMLKL+H+VDDK+H+RS G YS +TQQPLGGK+Q Sbjct: 1242 NKGKQVLYDGRTGEPFDGLISVGLTYMLKLDHMVDDKIHSRSVGPYSKITQQPLGGKSQN 1301 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 GGQRFGEMEVWALEAYGAAY L E+LT+KSDDV GR + Y I+ G+ + GMPESF + Sbjct: 1302 GGQRFGEMEVWALEAYGAAYNLLEILTIKSDDVQGRNQAYNAIIKGHDVVADGMPESFKL 1361 Query: 1326 LLKEIRSLGINIELEDE 1342 L K+++ LG+ I +E + Sbjct: 1362 LTKQMQGLGLCITVETK 1378 >UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax=Nephroselmis olivacea RepID=RPOB_NEPOL Length = 1109 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 287/789 (36%), Positives = 431/789 (54%), Gaps = 45/789 (5%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L F I + +V V + R + +++ + + I+ + + Sbjct: 111 LMTSRGHFIINGSSRVVVNQIVRSPGIYFKEMIDQKHRRM-FQASIISNRGSWVRLETDV 169 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY--ISETLRVDPTNDRL--- 360 G + + + +L L G + + + + + L D++ Sbjct: 170 DGMIWVRMDKAKKISILIVLEAMGLSKKTIFRSLKSPEFLFKALQQLLAKKRWQDKVYEL 229 Query: 361 ------SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 AL +Y + P +P A + RYD+ VGR+K N+ L Sbjct: 230 IPQSTTDALFHLYTKLSPDKPGNTLTARRVLYEKLMDAKRYDVGLVGRVKLNKKLKLPVP 289 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 E L D + LI + G+G+VDDIDHL NRR+R GE+ ++Q R+GL R+ER Sbjct: 290 EHVHTLRPVDFLAATDYLIGLEYGRGQVDDIDHLKNRRVRCAGELIQSQLRIGLNRLERT 349 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 ++ R+S + ++N KP+ AA++EFFGS+ LSQFMDQ NPL+E+THKRR+S+LG Sbjct: 350 MQGRISRP-GELPGMSSLMNPKPVMAALREFFGSNPLSQFMDQTNPLAELTHKRRLSSLG 408 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+++RAG VR++HP+ YGR+CPIETPEGPN GLI S++ YA+ N+YG LE P+ +V Sbjct: 409 PGGLSQDRAGMAVREIHPSQYGRICPIETPEGPNAGLIGSMATYARLNQYGGLECPFYQV 468 Query: 595 TDGVVTDEI--HYLSAIEEGNYVIAQANS---------------NLDE--EGHFVEDLVT 635 +G V E +L+A +E + + LD + + Sbjct: 469 VEGKVLYEFGPIFLTAEQEDQVTVVAGDILDQRKLMVAVAEGRDPLDPAVRPTLPDRPLI 528 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 RS+ E S V+Y+ ++ Q++SV SLIPFLEHDDANRALMG+NMQRQAVP L+ Sbjct: 529 LRSRQEFHTGSFRDVNYVGIAPTQMISVATSLIPFLEHDDANRALMGSNMQRQAVPLLKT 588 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY---PGEAGIDIYN 752 + P++GTG+E VA D+G + G+V YVDA+RIV+ ++ ++ + Sbjct: 589 EAPIIGTGLEAQVAADAGGVVQSPFEGIVVYVDATRIVVSTSKSKLALSKKRKIHESNVF 648 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 L Y RSNQ TCI+Q P + L PV RGD+LADG ST G++ALG+N+ VA+MPW GYNF Sbjct: 649 LQVYQRSNQGTCIHQRPIIPLHTPVIRGDLLADGSSTSGGQIALGKNLLVAYMPWEGYNF 708 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA--LSKLDESGI 870 ED+IL+SER++ +D +T++HI+ ++ TKLGPEEIT I + + LDE GI Sbjct: 709 EDAILISERLIYDDLYTSLHIERYEVETQHTKLGPEEITKSIVHETDDKLPYRWLDERGI 768 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 V GA V GD+L+GK+TPK E +LTPE +L+ AIFG++ +D+SLRVP GV G V+D Sbjct: 769 VMRGAWVEPGDVLIGKITPKEEKELTPELRLVYAIFGKRPKGFRDTSLRVPQGVRGRVVD 828 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 V++ + ++ + + Q ++ + G + ++ + D Sbjct: 829 VRMIRDED-------TKVVHVYVCQQRQIQVGDKMAGRHGNKGIVSRIVPRQDMPY-LQD 880 Query: 991 KLPRDRWLE 999 P D L Sbjct: 881 GTPVDMVLN 889 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 162/479 (33%), Positives = 241/479 (50%), Gaps = 61/479 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDS---SLRVPNGVS 925 I+ + V GD+L G T G+ L LL A + + +D+ S R+ Sbjct: 666 IIPLHTPVIRGDLLADGSSTSGGQIALGK--NLLVAYMPWEGYNFEDAILISERLIYDDL 723 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----EELQILEAGLFSRIRAVLVA 981 T + ++ + + EI + + + L +E I+ G + VL+ Sbjct: 724 YTSLHIERYEVETQHTKLGPEEITKSIVHETDDKLPYRWLDERGIVMRGAWVEPGDVLIG 783 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 E+ + P R + K + L + ++ Sbjct: 784 KITPKEEKELTPELRLVYAIFGKRPKGFRDTSLRVPQGVRGRVVDVRMIRDEDT------ 837 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 K+V VY+ +R+IQ GDKMAGRHGNKG++S+I P +DMPY ++GTPVD+VLNPL Sbjct: 838 ------KVVHVYVCQQRQIQVGDKMAGRHGNKGIVSRIVPRQDMPYLQDGTPVDMVLNPL 891 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 GVPSRMN+GQ+ E LG+A + +G ++ + GA+ + + Sbjct: 892 GVPSRMNVGQVFECLLGLAGQRLGQQLKVRAFDEMY--------------GAEASRHLVY 937 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 + + E+ L D G+ RL DGRTG+ F Sbjct: 938 NKLHEAS-------------------------EVTGHHWLFDPNHPGKSRLIDGRTGDMF 972 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 ++ VT+G YMLKL H VDDK+HAR+TG YSL+TQQPLGG+++ GGQR GEMEVWA E + Sbjct: 973 DQAVTIGQAYMLKLIHQVDDKIHARATGPYSLITQQPLGGRSKRGGQRLGEMEVWAFEGF 1032 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 GAAYTLQE+LTVKSDD+ GR ++ +V G E G PESF V+++E+++L ++I + Sbjct: 1033 GAAYTLQELLTVKSDDMQGRNEIMSAMVQGRQLPEMGTPESFKVMIRELQALCLDIGIY 1091 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 157/387 (40%), Gaps = 36/387 (9%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + RKD P +P L+SIQ DSF F+E+ GL V P+ Sbjct: 3 QNLQRKDSQWTP--FILPDLISIQRDSFLLFLER------GLATELSHVTPLTGSHFRIT 54 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L YRL P +QE + +YSA L V + E ++ + Q V+MG+I Sbjct: 55 LCSHGYRLKRPKVSIQEAVYQATSYSAALYVNV-----ETNQSNLGTQETQIQSVWMGDI 109 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT G F+ING+ RV+V+Q+ RSPG++F + H + ++ A II RGSW+ E Sbjct: 110 PLMTSRGHFIINGSSRVVVNQIVRSPGIYFKEMIDQKH---RRMFQASIISNRGSWVRLE 166 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDL-----FFEKVIFEIRDNKLQMELV 242 D ++VR+D+ +K+ I+L A+ + + I F K + ++ K + V Sbjct: 167 TDVDGMIWVRMDKAKKISILIVLEAMGLSKKTIFRSLKSPEFLFKALQQLLAKKRWQDKV 226 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 E + ++ + + T R L + + V + + K Sbjct: 227 YELIP-QSTTDALFHLYTKLSPDKPGNTLTARRVLYEKLMDAKRYDVGLVGRVKLNKKLK 285 Query: 303 DE--------STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + + A + + L+ + I+ L + + ++ Sbjct: 286 LPVPEHVHTLRPVDFLAATDYLIGLE----YGRGQVDDIDHLKNRRVRCAGELIQSQLRI 341 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAA 381 N + R+ RPGE P + Sbjct: 342 GLNRLERTMQ--GRISRPGELPGMSSL 366 >UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Tax=cellular organisms RepID=RPOB_PHATR Length = 1389 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 339/1339 (25%), Positives = 553/1339 (41%), Gaps = 213/1339 (15%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD 81 + YL Q +S F++ L + +S +L +L F Sbjct: 199 YSIKYLKQKQQNSTFYFLQSFK-----LYRVASKLLSSKSKQRVIQLFLKWLKLKNKSF- 252 Query: 82 VQECQIRGVTYSAPLRVKL--RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 E Q Y L L+ YE T K +++ + + + ++N Sbjct: 253 --EFQDEKQIYLIKYFNFLLTSLMKYEILQSSLTTKFNEDKTILLSKF----TKSNAILN 306 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL----DFEFDPKDNLF 195 +++ I++ + +S L+ P WL +F F K Sbjct: 307 LSDKQIINLSMIYNKLIINSQTLAQMELNSNLFLITKEPR--EWLTEMSNFLFLKKQISK 364 Query: 196 VRIDRRRKLPATII-----LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 + T + + + ++ L F K + ++ + + Sbjct: 365 ATFTLKSFQELTQLQNLKPAIYFSISLKEQLKYVFGKNKLTYKSDRHKYLKTKTQFLLYR 424 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 +I+ N ++ TA I + + + + K K D E+I Sbjct: 425 KDHEIKTNYNKKYDEKDLYTATVIPEYGSWIRIGFQRNTKINSYKYPLKSQED----EVI 480 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + +L L + G +E + Y ++ L ++ L E Sbjct: 481 IQLDKINQKPVLYLLKEMGLTDLEIYQNLEYADFFYFNKPLLINSKR-----LSEPLSRF 535 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 G + +E + F Y L VGR+K N L + E ++ +DI + Sbjct: 536 NLGLSYFKNISE---FSRIFDPTYYRLGRVGRLKINSRLNLKMSERLQTITYEDIFAITD 592 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 KLI++ K DDIDHL NRR+RSVGE+ +N FR+G R+ R ++ + + D L+ Sbjct: 593 KLINLTISKTVQDDIDHLKNRRVRSVGELLQNLFRIGFQRLGRKLRNQTNKIDSGQLLSF 652 Query: 491 DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 +++NA ++EFFGSSQLSQ++DQ NPLS +TH+RR+S LGPGG R+R F VRD+ Sbjct: 653 NIVNAS-----IREFFGSSQLSQYLDQTNPLSSLTHRRRVSGLGPGGFDRDRISFAVRDI 707 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV--TDEIHYLSA 608 HP+HYGR+CPIETPEG N+GLI SL+ A+ N+ GFLETP+ +V +G V T + YL+A Sbjct: 708 HPSHYGRICPIETPEGQNVGLIASLTTCARVNKSGFLETPFWRVINGKVVKTGQPVYLTA 767 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 E D+ ++ + + + Sbjct: 768 DIE---------------------------------------DFYKIAPADIATNKDNY- 787 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 + + +P + T E S + V+ ++ + + Sbjct: 788 ----------------LTKNVIPVRYKQDFVNVTPSEVDFIAISTIQVVSVAASLIPFFE 831 Query: 729 ASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 + M + Q P V G + D Sbjct: 832 HDDANRALMGSNMQRQSVP---------------LLLPQKPIVGTGL---ENQIAIDS-- 871 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 + ++ +++ ++ + K Sbjct: 872 --------------------------GMTLN--SYSNGVVSSVTANKIVVNDKTGKRLTY 903 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 ++ + + + ++ IV+ G +V G IL ++L+ + +L Sbjct: 904 KLQKYLRSNQQTCINH---RPIVWKGEQVKSGQIL-TDGPAITSSELSLGQNVLIGYMPW 959 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE------ 962 + + +D+ L ++ ++ VFT +E+ K ++ L++ K++ Sbjct: 960 QGYNFEDAIL-----INERLVYDDVFTSIHIERYKIEIDRNSDTLERTTKNIPNLNPREI 1014 Query: 963 ----ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 + I+ G F R +LV + ++LP + L + K + Sbjct: 1015 RHLNDDGIVTVGTFVRPGDILVGKVISNNTSEQLPESKLLRAIFGAKAKGVKDNSYRMSD 1074 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 E E +R K+T + + V++A R+IQ GDK+AGRHGNKG+IS+ Sbjct: 1075 GEYGRVIETVTFNRRTKLTYKFE-------KIYVFIAQIRKIQVGDKIAGRHGNKGIISR 1127 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I +DMP+ +GTP+DI+LNPLGVPSRMN+GQ+ E LG+A + + + + Sbjct: 1128 ILSRQDMPFLPDGTPLDILLNPLGVPSRMNVGQLYECLLGLAGDKLNARFKILPFDEMYG 1187 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 ++ + A + + Sbjct: 1188 LEISRILINKKLRQASIAKNES-------------------------------------- 1209 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L + G++ L DGRTG++FE PVTVG YMLKL HLVDDKMHAR+TG YSL+TQQP Sbjct: 1210 -WLFNPYAPGKMVLIDGRTGKEFENPVTVGNAYMLKLIHLVDDKMHARATGPYSLITQQP 1268 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 L GKAQ GGQRFGEMEVWALE +GAA+TL+E+LT+KSDD+ GR + IV G + G Sbjct: 1269 LRGKAQHGGQRFGEMEVWALEGFGAAFTLKELLTIKSDDMQGRNETLNAIVKGQQIPKFG 1328 Query: 1319 MPESFNVLLKEIRSLGINI 1337 +PESF VLL E+RS+G+++ Sbjct: 1329 IPESFKVLLHELRSIGLDM 1347 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 86/509 (16%), Positives = 181/509 (35%), Gaps = 46/509 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN--SELQYVSYRLGEPVFD 81 +P L++Q SF FI Q GL IQ +S N + Y L +P + Sbjct: 7 LPDFLAMQRISFCWFITQ------GLTEELALFSRIQDFSQNTEYVMFGEEYSLIKPSYS 60 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY-MGEIPLMTDNGTFVING 140 + + Y A L + + + V I+ + + +PLMT + TF+ING Sbjct: 61 LLIARKYSGNYRAQLVIPIEVRN-------KVVNSIRYHNQFPIITLPLMTTDATFIING 113 Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSG-KVLYNARIIPYRGSWLDFE-FDPKDNLFVRI 198 ERVIVSQ+ RSPGV+F+ +K + + K + I R E F + +LF + Sbjct: 114 CERVIVSQIIRSPGVYFEKNKNQKTRNQFKKKLSTDINKLRSFIPSGEAFISEFDLFFPL 173 Query: 199 DRRRKLPATIILRALN-YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 P + + + + I + + + +++ + R + ++ Sbjct: 174 PTSIYDPVKKKKKIIPHWQSNSIYYYSIKYLKQKQQNSTFYFLQSFKLYRVASKLLSSKS 233 Query: 258 NGKVY--VEKGRRITARHIRQLEKDDVKLIEVP----VEYIAGKVVAKDYIDESTGELIC 311 +V K ++ + ++ + LI+ + +++ + + Sbjct: 234 KQRVIQLFLKWLKLKNKSFEFQDEKQIYLIKYFNFLLTSLMKYEILQSSLTTKFNEDKTI 293 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + + + LS + ++ + + +++ E M Sbjct: 294 LLSKFTKSNAILNLSDKQIINLSMIYNKLIINSQTLAQMELNSNLFLITKEPREWLTEMS 353 Query: 372 PGEPPTREAAESLFENLFFSEDR----------YDLSAVGRMKF----NRSLLREEIEGS 417 ++ +++ F F E + +S ++K+ N+ + + Sbjct: 354 NFLFLKKQISKATFTLKSFQELTQLQNLKPAIYFSISLKEQLKYVFGKNKLTYKSDRHKY 413 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER--AV 475 ++ I K + D+ D +V + R+G R + + Sbjct: 414 LKTKTQFLLYRKDHEIKTNYNK-KYDEKDLYT----ATVIPEYGSWIRIGFQRNTKINSY 468 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKE 504 K L + + ++ D IN KP+ +KE Sbjct: 469 KYPLKSQEDEVIIQLDKINQKPVLYLLKE 497 >UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular organisms RepID=B2IM40_STRPS Length = 824 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 314/583 (53%), Positives = 414/583 (71%), Gaps = 11/583 (1%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++ DI+ M +++ G G VDDIDHLGNRRIR+VGE+ NQ R+GL R+ER V+ER+ Sbjct: 1 MTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNVRERM 60 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 S+ D + L PQ +IN +P++AAVKEFFGSSQLSQFMDQ+NPLSE++HKRR+SALGPGGLT Sbjct: 61 SVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLT 120 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD--G 597 R+RAG+EVRDVH THYGR+CPIETPEGPNIGLIN+LS Y N+YGF++TPYRKV G Sbjct: 121 RDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRETG 180 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VVT+EI +L+A EE Y +AQANS L+E+G F E +V R +G + + + VDYMDVS Sbjct: 181 VVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRHQGVNQEYPANIVDYMDVSP 240 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +QVV+V + IPFLE+DD+NRALMGANMQRQAVP + P VGTGME A DSG + Sbjct: 241 KQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAPYVGTGMEYQAAHDSGAAVI 300 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A+ G V Y DA ++ ++ + +D+Y++ K+ RSN T NQ V +G+ V Sbjct: 301 AQYDGKVTYADADKVEVRRED-------GSLDVYHIQKFRRSNSGTAYNQRTLVKVGDVV 353 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 E+GD +ADGPS + GE+ALGQN VA+M W GYNFED++++SER+V++D +T++H++E Sbjct: 354 EKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYE 413 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 +RDTKLGPEEIT +IPNVGE AL LDE GI+ IGAEV GDILVGKVTPKGE L+ Sbjct: 414 SETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSA 473 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQA 956 EE+LL AIFG+K+ +V+D+SLRVP+G G V DV++FTR +G E + + + Q Sbjct: 474 EERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQK 533 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 +K + G + ++ + D P D L Sbjct: 534 RKIKVGDKMAGRHGNKGVVSRIVPVEDMPY-LPDGTPVDIMLN 575 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 180/484 (37%), Positives = 257/484 (53%), Gaps = 76/484 (15%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V +G V GD + G GE L + + A + + +D+ + +S + Sbjct: 346 LVKVGDVVEKGDFIADGPSMENGEMAL--GQNPIVAYMTWEGYNFEDAVI-----MSERL 398 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + V+T +E+ + ++ ++ +++ +E+ I+ G + + Sbjct: 399 VKDDVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDI 458 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + D +R L D+ ++ + L + + K+ + Sbjct: 459 LVGKVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRV----N 514 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L GV +V+VY+A KR+I+ GDKMAGRHGNKGV+S+I P+EDMPY +GTPVDI+L Sbjct: 515 GDELQSGVNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIML 574 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNI G + L Sbjct: 575 NPLGVPSRMNI---------------GQVMELHLGMAARTL------------------- 600 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 G+ IATPVFDGA ++ +K + + + LYDGRTG Sbjct: 601 --------------------GIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTG 640 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F+ V+VG MYM+KL+H+VDDK+HARS G YS VTQQPLGGKAQFGGQRFGEMEVWAL Sbjct: 641 EPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWAL 700 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGA+ LQE+LT KSDD+NGR K Y+ I G +PG+PESF VL+KE++SLG+++ Sbjct: 701 EAYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMR 760 Query: 1339 LEDE 1342 + DE Sbjct: 761 VLDE 764 >UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=B3L0J5_PLAKH Length = 1371 Score = 591 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 215/1270 (16%), Positives = 416/1270 (32%), Gaps = 208/1270 (16%) Query: 187 EFDPKDNLFVRIDRRRKLPATIILRAL-----NYTTEQIL---DLFFEKVIFEIRDNKLQ 238 + ++ RI+ R +P L+++ +I + F++ + I + + Sbjct: 194 QILKDKFIYERINLGR-IPLM--LKSMFCWTKGLPESEIADMGECAFDQGGYFIVNGGEK 250 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + + ER+ + + G R + + + + Sbjct: 251 VLVAQERMAHNFIYVFKKKQPSKF---GWVAEIRSQMERSQATSAFSVKMKTKTGSRGSS 307 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI---SETLRVDP 355 + L L L + + I D + I ETL Sbjct: 308 VRTGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINTLRETLEECI 367 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 ++ P +RE + L + L +G Sbjct: 368 DYPTQDICLDFIGKRGPTVGASREKRILYAKELL---RKEVLPHMG-----------TGP 413 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 G I ++ +L+ G+ + DD DH G +R+ G + + F ++ + V Sbjct: 414 GVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDV 473 Query: 476 KERLSLGDLDTLMPQDMI----NAKPISAAVKEFFGSSQL-------------SQFMDQN 518 K L +D P D+ + I+ ++ + +Q +++ Sbjct: 474 KRVLQRQ-IDNNKPFDVAGAVRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRL 532 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 S ++H RR++ L RE + R +H TH+G +CP ETPEG ++GL+ +LS+ Sbjct: 533 TYSSCLSHLRRLNT----PLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLM 588 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 + G + + + + V N G +V + Sbjct: 589 CDISV-GTSTNNIFEFLLEWGLESLDEVPPQLMKEKVKLFLN------GKWVGCFNQIDN 641 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 E+ R + D ++ + F + A R L ++ + Sbjct: 642 LIETLYELRRRCDISPEASIVRDVNSKEIKIFTDSGRAMRPLYVVKN-------VKGENK 694 Query: 699 LVGTGME---RAVAVDSGVTAVAKRGGVVQYVDASRIVI------------------KVN 737 L T ++ + G+++Y+D Sbjct: 695 LKLTKEHVKNMMAYPETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYHNNYT 754 Query: 738 EDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------ 788 E++P I + + +S +NT + M ++G V ++ D + Sbjct: 755 HCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTLAHLLYYP 814 Query: 789 ------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 EL G N VA M + GYN EDS+++++ + F ++ + Sbjct: 815 QRPLVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTY 874 Query: 837 ACVSRDT-----KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 + + + + N+ +KLD G++ G V G DI++GKV+P Sbjct: 875 TSEEKQQGSLIIESFEKPSIRYVKNLKRGDYTKLDNDGLIAPGIRVLGDDIIIGKVSPNI 934 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS----GTVIDVQVFTRDGVEKDKRALE 947 E + + + I S +S G G+V++ + G Sbjct: 935 EDEDDIVIQRMPNIQMGYNSG-ASTSNGFMIGKESSAGGSVLNGSASSVCGSVSSSPYSP 993 Query: 948 IEE--MQLKQAKKDLSEELQILEAG-------LFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + + D + +G + + + + + + Sbjct: 994 STMGGSNMMDSMPDSPVSDRYSSSGPVGSATVGPASVSSSTPSNTTIFRSGNTISSVNSP 1053 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD----------LAPGVLK 1048 + G T + + K+ + + ++ K Sbjct: 1054 QYGTTIVSGSTKDDLEIPTLTISTSNILKQYKKDCSLSLRENENGVIDTVMLSSNSRGNK 1113 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 KV + R Q GDK A RHG KG I EDMP+ +GT DI++NP VPSRM Sbjct: 1114 FAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSDGTFPDIIMNPHAVPSRMT 1173 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 IG ++E G A G + +A + V ++ + + + Sbjct: 1174 IGHLVECLAGKVAAIEGGEGDATPFSKITVQEISQRLHNLGYEKYGNDVLYNG------- 1226 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 +G+ + + +G Sbjct: 1227 -------------------------------------HNGK----------MLKSKIFIG 1239 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 Y +L H+V+DK+HARS G +++T+QP G+++ GG RFGEME + ++G+A L+ Sbjct: 1240 PTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLK 1299 Query: 1289 EMLTVKSD----DVNGRTKMYK------------NIVDGNHQMEPGMPESFNVLLKEIRS 1332 E L +SD V + + + +P + +L +E+ + Sbjct: 1300 ERLFEESDAYRVHVCDNCGLCCIADINKNAYECTVCNSKTNISQIYIPYACKLLFQELMT 1359 Query: 1333 LGINIELEDE 1342 + I +L E Sbjct: 1360 MAIYPKLVLE 1369 >UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN02_HODCD Length = 1267 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 312/876 (35%), Positives = 462/876 (52%), Gaps = 49/876 (5%) Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + + V + F SS Q+ DQ N LSE++H+ R++ +G GG+ A RDV H Sbjct: 411 QRKLQPVVSKLFRSSSACQYADQVNSLSELSHRLRLTCMGGGGVNARSADTRSRDVRKWH 470 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G+VCPIE+PEG +IGL+ L++YA+ G + T + K G++++++ L+ + + Sbjct: 471 FGKVCPIESPEGQSIGLVLQLAMYARVEASGHIATMFAKSRRGLISNQMLALNCFSQQAF 530 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 IA ++ V + ++ + VD + Q+ S +LIPFLEH+ Sbjct: 531 SIAIFGASP------ASARVMSFKACKPAMCAISAVDLWPATNAQLFSPAVNLIPFLEHN 584 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DA RALM +NM +QA+P PLVGTG ERAV + +G +A + VV DA+++V+ Sbjct: 585 DATRALMASNMLKQALPLAEPQAPLVGTGEERAVMLAAGHNLLADQHCVVVRADAAQVVV 644 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 P Y + + TRSNQ C V + ++ GDV+A+ S+D GE+ Sbjct: 645 YC------PCADAYKAYLVPEPTRSNQGVCRRLRVVVEPNQVLKAGDVVAECQSSDNGEM 698 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 +LG N+ VAFM WNG+N+EDSIL+SE V+ ++H+ +L T G E +T ++ Sbjct: 699 SLGANLLVAFMCWNGFNYEDSILLSEAVIARGLLDSLHVLKLKAKVLRTAFGDELVTNEL 758 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP------------------------- 889 P V E + L E G+V +G V D+LVGK++P Sbjct: 759 PMVAEKHKAHLSEQGVVSVGDTVCEHDVLVGKLSPVDYADSLDVATADAVATAGADDGGD 818 Query: 890 -KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG-VSGTVIDVQVFTRDGVEKDKRALE 947 L GE VK +SLRVP G +VIDV + + + +L Sbjct: 819 DGDSGGDDGLSVTLVNDMGENIRYVKSTSLRVPTGVECASVIDVSFASCEA----EASLG 874 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + DL + G ++ AV G A K LE ++ + Sbjct: 875 ESALDACVKELDLIQRRYARRLGKVAKWAAVGFDG---ANACSKPDHGLVLEAKSSNAQA 931 Query: 1008 QNQLEQLAEQY-DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 Q + L + Y E+ F + A +I+ + VL + V L V++ I+ GDK+ Sbjct: 932 QQAISLLRQLYACEVDALFARASAAASARISCDGPNSASVLDEITVTLLVRKSIKAGDKV 991 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 +GRHGNKGVIS++ P EDMP+ +GTP+DIVLNPL VPSRMNIGQILE LG+ +G Sbjct: 992 SGRHGNKGVISRVAPAEDMPHLADGTPIDIVLNPLSVPSRMNIGQILEARLGLVGLALGA 1051 Query: 1127 KINAMLKQQQEVAKLRE-FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 + ++ Q E ++ A + + +DL S V+ LA L +G+ + P Sbjct: 1052 EFERVVDACQVADASSERELEGAKSKISSLFPSLDLRRASASRVLALARKLSRGVGLECP 1111 Query: 1186 VFDGAKEAEIKELLKLGD-LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 F EA IK L + L SG+++L+DG TG F++ VG +Y+LKLNHLVDDKM+ Sbjct: 1112 PFCHLSEACIKALCRRAGALDASGRLQLFDGVTGLPFDQQTAVGSIYVLKLNHLVDDKMY 1171 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 AR+TG YS+VTQQPL GKA GGQR GEMEVWAL++YG +Y L+E LT K DDV R M Sbjct: 1172 ARATGPYSMVTQQPLKGKANKGGQRLGEMEVWALQSYGVSYMLKEALTAKCDDVAARHVM 1231 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +I ++E ES +L++E+ SL ++ E Sbjct: 1232 ASSIAGCAPRVESSWGESLLLLVREMCSLCVDFRFE 1267 >UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acholeplasma sp. DM-2009 RepID=B9VQ44_9MOLU Length = 1223 Score = 579 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 331/840 (39%), Positives = 469/840 (55%), Gaps = 74/840 (8%) Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 ++ D +E E + + + G+V VE G +T + L + L Sbjct: 272 DLYGKIDGITPIEYAKEIIVEQNIVNLL--TGEVIVEAGSVLTPEVRQTLLVNREGLNYA 329 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS--QSGHKRIETLFTNDLDHGP 345 + Y+ + D + L E++ ++ ++ + K +E L + Sbjct: 330 SLRYLRT-FIDHDILLADDSVLFYE-GTEVTDEVYFQIYENKQNLKSLEDLKYATVYAKQ 387 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF---FSEDRYDLSAVGR 402 I + L ++ + + + +M G T E L N + +Y L A + Sbjct: 388 DI-DILEDYRRHESVESQRDHKPIMYCGYEITDENLLELQINRNKLDENVIKYFLVAGKK 446 Query: 403 MKFNRS-----------------------------LLREEIEGSGILSKDDIIDVMKKLI 433 +F R + + E ++ DII + + Sbjct: 447 GEFYRKESQRRATFVEVIQIKAAKDAKDDKDVIELIGHDSRETRLHITVSDIIASISYYL 506 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI 493 ++ +G G++DDIDHL NRR+R +GE+ +NQFR+GL ++E+ +K+++S D Q +I Sbjct: 507 NLYDGVGKIDDIDHLSNRRLRLIGELLKNQFRIGLAKLEKNIKDKMSTADAKEASLQSLI 566 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 N KP++A++KEFFGSSQLSQFMDQ NPL+E+T KRR+SALG GGL R+RAG EVRDVH + Sbjct: 567 NIKPLTASLKEFFGSSQLSQFMDQINPLAELTQKRRVSALGTGGLARDRAGVEVRDVHES 626 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG-----VVTDEIHYLSA 608 HYGR+CPIETPEGP+IGLI+SL+ YA+ ++YGF++TPY KV VT E Y +A Sbjct: 627 HYGRICPIETPEGPSIGLISSLASYAKVDQYGFIQTPYLKVDKSDPEHPFVTSEYVYFTA 686 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 EE +++IA A+S DE GHF + V R G++ + +VDYMDVS +Q+VSV S I Sbjct: 687 GEEEHHIIASADSQTDENGHFKTETVIGRFMGDTRSYPSKKVDYMDVSPKQIVSVATSSI 746 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 PFLEHDDA+RALMGANMQRQAVP L D P+VGTG+E A DSG VA GVV Y D Sbjct: 747 PFLEHDDASRALMGANMQRQAVPLLVPDSPIVGTGIEYRSAKDSGSAIVAHVDGVVTYAD 806 Query: 729 ASRIVIKVNEDEMYPGEAG----------------------------IDIYNLTKYTRSN 760 +IVI V + G + Y LT++ RSN Sbjct: 807 GRKIVIAVKPEASIKTTRGKLVYDKDTEFNWEAYDQIRQAKMTDLLRFETYPLTQFLRSN 866 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q+T I Q P V +GE +++GDV+ADGPS + GELALG+N+ VAFM W GYN+ED++++SE Sbjct: 867 QDTSILQKPIVQIGEKIDKGDVIADGPSINKGELALGRNVVVAFMTWEGYNYEDAVIMSE 926 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 +V+ D +T+IHI E SRDTKLG EEIT +IPNV AL LD+ G+V G EV G Sbjct: 927 DLVKNDVYTSIHIDEHQVESRDTKLGKEEITREIPNVSPDALKFLDDRGVVIPGTEVKEG 986 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGV 939 DILVGK+TPKG+T+ TPEEKLL+AIF EKA +V+D+SL+VP+G G V +Q F++ +G Sbjct: 987 DILVGKITPKGQTEPTPEEKLLQAIFNEKAREVRDTSLKVPHGGGGIVHSIQYFSKSNGD 1046 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 E E+ + + + +K + G I +L + D P D L Sbjct: 1047 ELGPGVNEVIRVYIVKKRKISEGDKMAGRHGNKGVISKILPREDMPY-MADGTPVDIMLN 1105 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 131/408 (32%), Positives = 189/408 (46%), Gaps = 66/408 (16%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV IG ++ GD++ G KGE L ++ A + + +D+ + + V V Sbjct: 876 IVQIGEKIDKGDVIADGPSINKGELALGR--NVVVAFMTWEGYNYEDAVIMSEDLVKNDV 933 Query: 929 -----IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 ID + K + E + ++ ++ G + +LV Sbjct: 934 YTSIHIDEHQVESRDTKLGKEEITREIPNVSPDALKFLDDRGVVIPGTEVKEGDILVGKI 993 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + P ++ L+ ++ ++ + L + + +K + GD+L Sbjct: 994 TPKGQTEPTPEEKLLQAIFNEKAREVRDTSLKVPHGGGGIVHSIQYFSK----SNGDELG 1049 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 PGV ++++VY+ KR+I GDKMAGRHGNKGVISKI P EDMPY +GTPVDI+LNPLGV Sbjct: 1050 PGVNEVIRVYIVKKRKISEGDKMAGRHGNKGVISKILPREDMPYMADGTPVDIMLNPLGV 1109 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMNIGQ+LE HLGMAAK +G K+ + L + + A + D Sbjct: 1110 PSRMNIGQVLEIHLGMAAKKLGIKVATPVFDGLTQLDLEQVMAEAGMASDGKQVLYDG-- 1167 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 R G P V G +Y Sbjct: 1168 -------------RTGEPYENRVSVG---------------------VMY---------- 1183 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 M+KL+H+VDDK+HARS G Y+LVTQQP+GGKAQ GGQRFG Sbjct: 1184 --------MIKLSHMVDDKLHARSVGPYTLVTQQPMGGKAQNGGQRFG 1223 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD- 354 +Y + + + L A L G IE + + + ET + D Sbjct: 1 GAWLEYEMGAKNIFYGKLDRSKKVSLTALLQAFGFDGIEEIKKLFPTYKKMLDETFKKDE 60 Query: 355 --PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 +A+ ++Y +R GE AA+ F RYDL VGR KF + L Sbjct: 61 KEGILSSDTAIEDLYSKLRQGEKIPVSAAKEFVRTRLFDSRRYDLEEVGRYKFKQKLDI 119 Score = 57.2 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 91/284 (32%), Gaps = 31/284 (10%) Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD------ 234 G+WL++E K+ + ++DR +K+ T +L+A + + + F + + Sbjct: 1 GAWLEYEMGAKNIFYGKLDRSKKVSLTALLQAFGFDGIEEIKKLFPTYKKMLDETFKKDE 60 Query: 235 -------NKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLI 285 + +L + +GE + R R K + + Sbjct: 61 KEGILSSDTAIEDLYSKLRQGEKIPVSAAKEFVRTRLFDSRRYDLEEVGRYKFKQKLDIT 120 Query: 286 EVPVEYIAG---------KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 + G A+D ID T ++ A + + + + LSQ + L Sbjct: 121 NRLMTIAQGITAPNQPAIYKYAQDVIDPVTKAILVAKDQIVDVASVELLSQHR----DAL 176 Query: 337 FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYD 396 L + + + S L E Y P L Sbjct: 177 RKVVLSKESSLQNESENEVFGIKTSDLFEQYAKDDILYIPADAKEAGLLVPARTKITPEI 236 Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 + + + + N ++++ G+ ++ KD KL+ GK Sbjct: 237 RNLIYKNRNNLVFQKKDVNGNNVVEKD---ASKAKLLVDLYGKI 277 >UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax=Ostreococcus tauri RepID=RPOB_OSTTA Length = 1088 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 284/874 (32%), Positives = 428/874 (48%), Gaps = 55/874 (6%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R + R FF G++ S R I F KD F ++ Sbjct: 22 RYFLETGIREELDFFSPIVGQSLGSSSKRPTDRFIS-------VSFHSKDFYF----KKP 70 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 ++ L ++ + + + L E +F + + +V Sbjct: 71 HYTPQEAVQKLGTYKSSLIVPVHVYSKYLNLNATFPVAFCDLPLMTEHGTFILNGSPRVI 130 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 V + R +++ + V +++ + + G + + + + Sbjct: 131 VHQIVRCPGVYLKPQFDKQGNRTHL-VSFLSAYGSWLRFETDKKGVVFAHIDNLRKVPVT 189 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRV-DPTNDRLSALVEIYRMMRPGEPPTREAA 381 L G + L + + TL+ D A++ + + P P T Sbjct: 190 VFLQALGFSMDTIVGA--LKYPEALDPTLKEVDWKLTTDEAILLLMSRLFPNRPATVLRG 247 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 N FF+ RY LS VGR + N+ L+ D + + L+ NG+ E Sbjct: 248 RKFLFNQFFNPRRYSLSDVGRKRVNQKFRMRSKTKHLTLTPQDALAALDYLLRCENGETE 307 Query: 442 V-DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP------QDMIN 494 DDIDHL NRR R GE+ + QFR+GL R+ER + R+S ++ P +I Sbjct: 308 FLDDIDHLKNRRARLAGELIQTQFRLGLNRLERVIYNRISDENILRKTPGALGSLNSLIR 367 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + +++ +EFFGS+QLSQFMDQ NPL+EITHKRR+S+LGPGGL R+RAG VR +HP++ Sbjct: 368 TQVLASVFQEFFGSNQLSQFMDQTNPLAEITHKRRLSSLGPGGLNRDRAGLIVRGIHPSY 427 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE---IHYLSAIEE 611 YGR+CPIETPEG N GL+ S++ + Q N+ GFLE+PY K+ T + LSA E Sbjct: 428 YGRICPIETPEGKNAGLVGSIATFTQINKNGFLESPYYKLISESNTPDRNGFFLLSAFYE 487 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 + V+AQ + +L + R+K + + + +++++ + Q +S+ SLIPFL Sbjct: 488 EDTVVAQGDVDLS------NFRIPTRNKSQFTENTVQEINFLGLCPIQFMSIATSLIPFL 541 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EHDDANRALMG+NMQRQAV LR+++P VGTG+E V D G T VAK+ + YVDA R Sbjct: 542 EHDDANRALMGSNMQRQAVSLLRSERPFVGTGLEAHVTRDIGATIVAKQNSYISYVDAQR 601 Query: 732 IVI---------------KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 I ED + + LT Y RSNQ+TC+N P V Sbjct: 602 IDYFTPVIGDTNLIDYQNLTAEDVFASNQFKHNTIWLTSYQRSNQDTCLNHKPLVEANTW 661 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 VE GD LAD +T GELALG+N+ + +MPW GYNFED++LVSER+V +D FT+IHI Sbjct: 662 VEAGDCLADNAATAKGELALGRNILIGYMPWEGYNFEDAVLVSERLVYDDVFTSIHISRY 721 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 + + G E T + LDE G+V IG V GD+LVGK++P+ ++ Sbjct: 722 EVSTARLREGQEYFTNQVDRN-----QYLDEFGVVKIGTWVEAGDVLVGKISPQPDSDND 776 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV-FTRDGVEKDKRALEIE---EMQ 952 PE +LLRAIFG A + K +S + +GVSG ++DV+ F R + ++E + Sbjct: 777 PESRLLRAIFGGVARNTKTTSYCLSSGVSGRILDVRCEFKRQTKNIEDESIESTGSVYVY 836 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 L + ++ + G + +L + Sbjct: 837 LVEKRRLQVGDKVAGRHGNKGIVSNILPRVDMPY 870 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 163/476 (34%), Positives = 234/476 (49%), Gaps = 53/476 (11%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +V V GD L T KGE L +L + + +D+ L VS + Sbjct: 655 LVEANTWVEAGDCLADNAATAKGELALGR--NILIGYMPWEGYNFEDAVL-----VSERL 707 Query: 929 IDVQVFTRDGVEKDKRALEI-----EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 + VFT + + + + E + + +E +++ G + VLV Sbjct: 708 VYDDVFTSIHISRYEVSTARLREGQEYFTNQVDRNQYLDEFGVVKIGTWVEAGDVLVGKI 767 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 D P R L + + + + E KR+ D+ Sbjct: 768 SPQPDSDNDPESRLLRAIFGGVARNTKTTSYCLSSGVSGRILDVRCEFKRQTKNIEDESI 827 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 V VYL KRR+Q GDK+AGRHGNKG++S I P DMPY ++G +D+VLNPLGV Sbjct: 828 ESTGS-VYVYLVEKRRLQVGDKVAGRHGNKGIVSNILPRVDMPYLQSGKALDMVLNPLGV 886 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMN+GQI E LG+AA + + + GA+V + Sbjct: 887 PSRMNVGQIFECLLGLAANTLKQNFKVLPFDEM--------------HGAEVSRGFVYHY 932 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 ++ + L + G+ ++DGRTG F++ Sbjct: 933 LYKSRLLTQQK-------------------------WLFKPNSPGKSIVFDGRTGLNFDQ 967 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 PVTVGY Y+LKL HLVDDK+HARSTG YSLVTQQPLGG+++ GGQR GEMEVWALE +GA Sbjct: 968 PVTVGYPYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRSKKGGQRLGEMEVWALEGFGA 1027 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AY LQE+LT+KSDD+ GR + + +++ G + G+PESF VL+ E+R L +++ + Sbjct: 1028 AYVLQELLTIKSDDMIGRNRAFMSMIRGTLLPKSGIPESFKVLVSELRGLCLDMSI 1083 >UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEK8_PEDMN Length = 1157 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 279/877 (31%), Positives = 426/877 (48%), Gaps = 93/877 (10%) Query: 212 ALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFDIEANGKVYVEKGRR 268 AL Y LF + +++ + V L + F + +V + + R Sbjct: 68 ALLYGKSYASRLFLPVQLTNQVTGEIKFQWVLLGTLPLLTKRGHFILNGCPRVVINQLIR 127 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 + ++ + I ++I + +++ + + +L L Sbjct: 128 SPGVYYQKRLDSQKRDI-FYADFICERGAWLRIEMDTSQRIWARMKRTPKIPVLILLQSM 186 Query: 329 GH----------------------------KRIETLFTNDLDHGPYISETLRVDPTNDRL 360 G K + L + D L Sbjct: 187 GMSLQTIFSSTSQRTILAKSLLPYEQKGKTKTLPKLVKAQNPLLLVRRHPVSQDTALKVL 246 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 SAL I + E + F + YDL +GR++ N+ L Sbjct: 247 SAL--IQARTKKEILVNSEMGKKFLMKKFRNPRSYDLGFIGRLRLNKRFGLSIATSYRQL 304 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 + +DI + LI + G +DDIDHL NRR+RS+GE+ + Q + L+R+E+ +++R S Sbjct: 305 TAEDIFHSVNLLISVSQGVASLDDIDHLENRRVRSIGELLQIQLGLALLRLEKMIRDRSS 364 Query: 481 L-----GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 + I+ K ++ A++EFFGSS LSQF+DQ NPL+E+THKRR+++LGP Sbjct: 365 FLLENNVSSVAKDIRSFISTKALNGAMREFFGSSPLSQFLDQTNPLAELTHKRRLTSLGP 424 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 G++RE AG VR +HP+HYGR+CPIETPEG N GL+NSL+VY++ ++ GF+++P+ + Sbjct: 425 SGVSRETAGMAVRGIHPSHYGRICPIETPEGQNAGLVNSLTVYSRVDQNGFIQSPFYLLN 484 Query: 596 DGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 +G + E + +LSA +E + I + + + G D + R E R +D + Sbjct: 485 NGQIQKEANLTFLSAKDEMSKTIIPGDIHFNSLGFIENDSLPSRKNQEFVRQQRGNIDLI 544 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 S Q++SV SLIPFLEHDDANRALMG+NMQRQAVPTL A++P VGTG+E + D G Sbjct: 545 ATSPLQMISVATSLIPFLEHDDANRALMGSNMQRQAVPTLYAERPRVGTGLESKIVTDIG 604 Query: 714 VTAVAKRGGVVQYVDASRIVIKVN------------------------------------ 737 + G V YVD+ +I+I+ Sbjct: 605 HIVQTRWSGYVSYVDSQKIIIQSFVKHSETFLPTQSIRFLETVSTSKKYSSSLKTDSIEK 664 Query: 738 ----------EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 + ++ E Y L Y+ SNQ+T Q P VS G+ VE GD+LADG Sbjct: 665 VFLKSKPGELKTKLEEYEFKTVEYLLENYSGSNQSTFFVQKPIVSEGDWVEAGDILADGS 724 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 +++ GELALG N+ VA++PW G+NFED+IL+SER+V +D +T++HI++ R+TK G Sbjct: 725 ASEKGELALGHNLLVAYIPWEGFNFEDAILISERLVTQDLYTSLHIEKYEMEIRETKFGL 784 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 E+IT +P+V + L LD GIV G V GDILVGKVTP + L+P E+LL I G Sbjct: 785 EKITNKLPDVRKKDLKNLDAQGIVKPGTWVQEGDILVGKVTPIRKKPLSPHERLLYDIVG 844 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK--DKRALEIE---EMQLKQAKKDLSE 962 + V+DSSLRVP G V+D+Q+ D K ++ ++ ++ L Q ++ Sbjct: 845 KINPTVRDSSLRVPRGTQARVLDIQIIYSDEKTKLGEEFVGKVPLKVQILLAQRRRIQVG 904 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + G I +L + D P D L Sbjct: 905 DKMAGRHGNKGIISRILPIQDMPY-LPDGTPLDIVLN 940 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 172/482 (35%), Positives = 250/482 (51%), Gaps = 58/482 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV G V GDIL G + KGE L LL A + + +D+ L +S + Sbjct: 707 IVSEGDWVEAGDILADGSASEKGELAL--GHNLLVAYIPWEGFNFEDAIL-----ISERL 759 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ----------ILEAGLFSRIRAV 978 + ++T +EK + + + L++ L + + I++ G + + + Sbjct: 760 VTQDLYTSLHIEKYEMEIRETKFGLEKITNKLPDVRKKDLKNLDAQGIVKPGTWVQEGDI 819 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV K P +R L + + L + ++ K Sbjct: 820 LVGKVTPIRKKPLSPHERLLYDIVGKINPTVRDSSLRVPRGTQARVLDIQIIYSDEKTKL 879 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G++ V V++ LA +RRIQ GDKMAGRHGNKG+IS+I PI+DMPY +GTP+DIVL Sbjct: 880 GEEFVGKVPLKVQILLAQRRRIQVGDKMAGRHGNKGIISRILPIQDMPYLPDGTPLDIVL 939 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN+GQ+ E L +A + +G+ + + G + + Sbjct: 940 NPLGVPSRMNVGQVYECLLSLAGRYLGENYRVVPFDEL--------------FGPHISRS 985 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + S + + + L + G+ +++DGRTG Sbjct: 986 LTYSKLYESSLKN-------------------------KQHWLFNPNCPGKTKIFDGRTG 1020 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F++PVTVG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWAL Sbjct: 1021 ECFDQPVTVGEAYVLKLVHLVDDKIHARSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWAL 1080 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 E +GAAY LQE+LTVKSDDV GR K+ +I+ G + G PE F VL+KE++SL +++ Sbjct: 1081 EGFGAAYILQELLTVKSDDVKGRHKIMYSILTGKNM-TMGTPECFKVLVKELQSLCLDVG 1139 Query: 1339 LE 1340 + Sbjct: 1140 VY 1141 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 68/296 (22%), Positives = 136/296 (45%), Gaps = 23/296 (7%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS- 72 F ++L P L IQ SF KF+E G+ + PI S + ++ + Sbjct: 2 SFNNISKLLT-PDFLEIQRVSFVKFLES------GIINEIKRRNPITSSAKEYQIFFYPE 54 Query: 73 -YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 Y+L P F ++ + G +Y++ L + ++L +IK Q V +G +PL+T Sbjct: 55 AYQLEAPEFSPKDALLYGKSYASRLFLPVQLTN-------QVTGEIKFQWVLLGTLPLLT 107 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 G F++NG RV+++QL RSPGV++ + S + ++ A I RG+WL E D Sbjct: 108 KRGHFILNGCPRVVINQLIRSPGVYYQK---RLDSQKRDIFYADFICERGAWLRIEMDTS 164 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR----DNKLQMELVPERLR 247 ++ R+ R K+P I+L+++ + + I ++ I + K + + +P+ ++ Sbjct: 165 QRIWARMKRTPKIPVLILLQSMGMSLQTIFSSTSQRTILAKSLLPYEQKGKTKTLPKLVK 224 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + + + + ++A + +K+ + E+ +++ K D Sbjct: 225 AQNPLLLVRRHPVSQDTALKVLSALIQARTKKEILVNSEMGKKFLMKKFRNPRSYD 280 >UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax=Embryophyta RepID=RPOB_ANGEV Length = 1070 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 261/760 (34%), Positives = 411/760 (54%), Gaps = 20/760 (2%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHI-RQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 L +F I +V + + R + +L+ + + + G + + Sbjct: 106 LMNSQGTFVINGIARVVINQILRSPGIYYDSELDHNGNSIYTGTIISDWGGRFKSEIDGK 165 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + + N ++S+ +L L G + L + + + A+V Sbjct: 166 KRIWVRLSKNRKVSIIIL--LLAMGLNMNDILKNVRYPNIFLRLFQRQAENIQSYEDAIV 223 Query: 365 EIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 E+Y+ + G ++ + FF + +++L GR N+ L + +L Sbjct: 224 ELYKNLYSAGGNLVFSDSICKELQTKFF-QQKFELGQFGRRNLNKKLNLDVPGNEHLLLP 282 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 D++ + LI + G G +DDID L NRR+RSV ++ Q + L R+E +++ + Sbjct: 283 QDLLAAVDYLIGVNYGIGTLDDIDDLKNRRVRSVADLLREQLGLALDRLEILIRQTIHTV 342 Query: 483 DLDT--LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 + P+ +I + P++ ++FFGS LSQF+DQ NPL+E+THKRR+S+LGPGGLTR Sbjct: 343 ARRKRLVTPKGLITSAPLTTIFQDFFGSHSLSQFLDQTNPLAELTHKRRLSSLGPGGLTR 402 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 A F+VRD++P+HYGR+CPIET EG N GLI SL+++A+ N+ G L +P+ K++ + Sbjct: 403 RTASFQVRDINPSHYGRICPIETSEGMNAGLIASLAIHAKVNDRGSLLSPFYKISKTLGE 462 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 + I YLS+ E+ Y IA N+ + E R + E + Q+ + + Q Sbjct: 463 EHIVYLSSEEDEYYRIATGNTLSLDREIREERATPARYRQEFLTIAWKQIHFRSIFPFQY 522 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 S+G SLIPFLEH+DANRALMG+NMQRQAVP + +K +VGTG+E +A+DSG V+ + Sbjct: 523 FSIGTSLIPFLEHNDANRALMGSNMQRQAVPLSQPEKCIVGTGLESQIALDSGSVVVSNQ 582 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G + Y+D I I + E +DI ++ Y RSN NTCI+Q P VS GE + +G Sbjct: 583 DGQIAYLDGETISI------LLQNEKTVDIKSII-YERSNNNTCIHQRPVVSQGERLRKG 635 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +LADG +T GELALG+N+ VA+MPW GYNFED++L+SER++ ED +T+ HI+ Sbjct: 636 QLLADGTATVGGELALGRNILVAYMPWEGYNFEDAVLISERLIYEDIYTSFHIERYEINI 695 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK--GETQLTPE 898 T GPE+IT +IP++ L LD +G+V G+ V GD+LVGK+TP+ + PE Sbjct: 696 YTTSQGPEKITKEIPHLDSYVLRHLDNNGLVVPGSWVETGDVLVGKLTPQEAENSLRVPE 755 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 KLL+AI G + ++ ++S L+VP G G VIDV+ + + + + + Q +K Sbjct: 756 GKLLQAISGIQLANTRESCLKVPIGGRGRVIDVRWIYDEDTLPNIA--NMVHVYILQKRK 813 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + G + +L + D P D L Sbjct: 814 IQVGDKVAGRHGNKGIVSKILPRQDMPY-LQDGTPVDMIL 852 Score = 309 bits (791), Expect = 5e-82, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 235/480 (48%), Gaps = 65/480 (13%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 +V G + G +L G +L +L A + + +D+ L +S +I Sbjct: 625 VVSQGERLRKGQLLADGTATVG-GELALGRNILVAYMPWEGYNFEDAVL-----ISERLI 678 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVE 985 ++T +E+ + + ++ K++ L+ L+ + + G V Sbjct: 679 YEDIYTSFHIERYEINIYTTSQGPEKITKEIPHLDSYVLRHLDNNGLVVPGSWVETGDVL 738 Query: 986 AEKLDK--------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 KL +P + L+ + + L + + Sbjct: 739 VGKLTPQEAENSLRVPEGKLLQAISGIQLANTRESCLKVPIGGRGRVIDVRWIYD----- 793 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 +D P + +V VY+ KR+IQ GDK+AGRHGNKG++SKI P +DMPY ++GTPVD++ Sbjct: 794 --EDTLPNIANMVHVYILQKRKIQVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMI 851 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 L+PLGVPSRMN+GQI E LG+A + ++ + + Sbjct: 852 LSPLGVPSRMNVGQIFECLLGLAGDILKKHYRITPFDERYER--------------EASR 897 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 K+ S + L + G+ RL DGRT Sbjct: 898 KLVFSELHEASQEAAIP-------------------------WLFEPDHPGKSRLIDGRT 932 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 G+ FE+PVT+G YM+KL H VDDK+HARS+G Y+LVTQQPL G+++ GGQR GEMEVWA Sbjct: 933 GDIFEQPVTIGKAYMMKLIHQVDDKIHARSSGPYALVTQQPLRGRSRGGGQRVGEMEVWA 992 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 LE +G +Y LQEMLT+KSD + R+K+ +IV G +P +PESF +L++E+RSL +N Sbjct: 993 LEGFGVSYILQEMLTIKSDHIPARSKLLGSIVTGKSIPKPNTVPESFRLLVRELRSLAVN 1052 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 87/424 (20%), Positives = 148/424 (34%), Gaps = 37/424 (8%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYR 74 + ++ +P IQ + FQ+FI QD L + I+ E + YR Sbjct: 5 ENKKMFVLPEFGRIQFEGFQRFIHQD------LVEELTNFPKIEDIDQEVEFRLFGERYR 58 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 L EP ++ + TYS+ L V +L+ I+ Q V+ G IPLM G Sbjct: 59 LTEPCIKERDAVYQSFTYSSDLYVPAQLMRRRN-------GRIQRQTVHFGSIPLMNSQG 111 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 TFVING RV+++Q+ RSPG+++DS+ +G +Y II G E D K + Sbjct: 112 TFVINGIARVVINQILRSPGIYYDSE---LDHNGNSIYTGTIISDWGGRFKSEIDGKKRI 168 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILD----------LFFEKVIFEIRDNKLQMELVPE 244 +VR+ + RK+ I+L A+ IL LF + +EL Sbjct: 169 WVRLSKNRKVSIIILLLAMGLNMNDILKNVRYPNIFLRLFQRQAENIQSYEDAIVELYKN 228 Query: 245 RLR-GETASFDIEANGKV---YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 G F ++ + ++ + R L K + + + +D Sbjct: 229 LYSAGGNLVFSDSICKELQTKFFQQKFELGQFGRRNLNKKLNLDVPGNEHLL----LPQD 284 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + + +LD + L + + L L E L + Sbjct: 285 LLAAVDYLIGVNYG-IGTLDDIDDLKNRRVRSVADLLREQLGLALDRLEILIRQTIHTVA 343 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 + P + F + S+ + + + R L G Sbjct: 344 RRKRLVTPKGLITSAPLTTIFQDFFGSHSLSQFLDQTNPLAELTHKRRLSSLGPGGLTRR 403 Query: 421 SKDD 424 + Sbjct: 404 TASF 407 >UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae RepID=D1J787_ECTSI Length = 1139 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 306/902 (33%), Positives = 454/902 (50%), Gaps = 65/902 (7%) Query: 213 LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR 272 ++ +I+ + R ++ +P L E +F +V + + R Sbjct: 88 MSLKKNEIIKKGIVQPEDFSRKERVFFGEIP--LLTEKGTFIFNGCERVIISQIIRSPGV 145 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 + +Q+ K+ E + G + + + + + + + L + Sbjct: 146 YYKQIIKEKKIFYEGTIISKYGSWLTFEL---EYNLIWVKFDKQYKIPINWFLVGLSLEE 202 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP--------PTREAAESL 384 E T + S + D++++ E +++ T + L Sbjct: 203 SEVYQTVQNFNFLIKSLSAIRLAIFDKMTSKSEKNKVVDKENHEAYNRNILLTVFRVQEL 262 Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 + YDL VGR+K N+ L L+ DI+ V+ KLI I ++DD Sbjct: 263 INQRLLDKGVYDLGEVGRIKLNKKLDIGLPLSRRTLTSLDILKVIDKLIHISFHNEKLDD 322 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE--------------------------- 477 ID+L NRR+RSVGE+ + Q RV L R+++ + Sbjct: 323 IDNLENRRVRSVGELLQLQVRVALGRIKKKINTDEKLTAEMFRIKKNKKRAGMKNSTPKK 382 Query: 478 ----------RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 R +TLMP +++N+K +++ ++EFFG S LSQ+ D+ N L+++THK Sbjct: 383 NKSTKKNQLGRKKKPQKETLMPNELLNSKVLTSVIREFFGLSPLSQYFDEVNALAQLTHK 442 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RRIS+LGPGGL E F RD+HPT YGR+CPIETPEG GLI SL+ +A+ N YGF+ Sbjct: 443 RRISSLGPGGLNSEHVSFAARDIHPTQYGRLCPIETPEGQKAGLIASLATHARINNYGFI 502 Query: 588 ETPYRKVTDGVVTDEI--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 TP+ +V G V E+ YL+A +E Y +A + L + F +V RS E Sbjct: 503 TTPFFRVYKGKVLYELGPVYLTAEQEATYNVASGDVLLTRDNFFRTKIVPVRSFNEFITV 562 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 V+++ VS Q+++VGASLIPFLEHDDANRALMG+NMQRQAVP L KP++GTG+E Sbjct: 563 DAINVNFLAVSPIQILAVGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIE 622 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 +A DS V + G++ V + RI I + + + Y L KY RSNQ T I Sbjct: 623 HQIAADSQVVLINLLDGIIDSVCSDRITII-DNKYLGSSKM----YFLDKYRRSNQETII 677 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 NQ P + GE VE G ++ADGP T+ GELALGQN+ VA+MPW+GYNFED+ILVS+R+VQ+ Sbjct: 678 NQKPLIWNGEIVEPGQIIADGPGTEGGELALGQNLTVAYMPWDGYNFEDAILVSDRLVQD 737 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 D FT+IHI++ D EEIT IPN+ E + LD +GI+ G V GGDILVG Sbjct: 738 DLFTSIHIEKYELQLMDESDTIEEITTSIPNIEEEEIINLDMNGIIKKGTFVNGGDILVG 797 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKR 944 K+TP E PE KLLRAIF ++ + +DSSLRVPNGVSG VI++Q +R+ G Sbjct: 798 KITPILEEDELPESKLLRAIFNIESPEPEDSSLRVPNGVSGRVIEIQTASREKGDNLGSG 857 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 E + + Q KK + G I ++ + LP +++ L Sbjct: 858 IYEWVCISIAQIKKIRIGDKLSGRHGNKGVISKIIPTDDMPF-----LPDGTIVDVILNP 912 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 +++ Q E F +R K+ D++ + + A+K+ + D Sbjct: 913 LGVPSRMN--VGQIFECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKAAKETD 970 Query: 1065 KM 1066 K Sbjct: 971 KC 972 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 168/480 (35%), Positives = 246/480 (51%), Gaps = 61/480 (12%) Query: 870 IVYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 +++ G V G I+ G T GE L + L A + +D+ L + Sbjct: 682 LIWNGEIVEPGQIIADGPGTEGGELAL--GQNLTVAYMPWDGYNFEDAILVSD-----RL 734 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAV 978 + +FT +EK + L E +++ + + I++ G F + Sbjct: 735 VQDDLFTSIHIEKYELQLMDESDTIEEITTSIPNIEEEEIINLDMNGIIKKGTFVNGGDI 794 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV + D+LP + L E + + L E + ++ + Sbjct: 795 LVGKITPILEEDELPESKLLRAIFNIESPEPEDSSLRVPNGVSGRVIEIQTASR----EK 850 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L G+ + V + +A ++I+ GDK++GRHGNKGVISKI P +DMP+ +GT VD++L Sbjct: 851 GDNLGSGIYEWVCISIAQIKKIRIGDKLSGRHGNKGVISKIIPTDDMPFLPDGTIVDVIL 910 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN+GQI E LG A + + + + + A Sbjct: 911 NPLGVPSRMNVGQIFECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKAAKET- 969 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + L + + G++ L DGRTG Sbjct: 970 --------------------------------------DKCWLFNKFSPGKVLLTDGRTG 991 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 + F+ V VG Y+LKL HLVD KMHARSTGSYSLVTQQPLGGK++ GGQRFGEMEVWAL Sbjct: 992 DVFDNSVLVGKPYILKLIHLVDKKMHARSTGSYSLVTQQPLGGKSKHGGQRFGEMEVWAL 1051 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EA+G AYTLQE+LT+KSDD+NGR +++ I+ G++ EPG+PESFNVLL+E+ +LG+++ Sbjct: 1052 EAFGVAYTLQELLTIKSDDINGRHEVFTAIIKGHNIPEPGIPESFNVLLRELNALGLDMT 1111 >UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 Tax=cellular organisms RepID=RPOB_ARATH Length = 1072 Score = 555 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 256/769 (33%), Positives = 416/769 (54%), Gaps = 23/769 (2%) Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR-QLEKDDVKLI 285 K +++ ++ + +P L + + ++ + + + + + +L+ + + + Sbjct: 89 KTSRNMQEQRIFIGNIP--LMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHNGISVY 146 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + G + + ++ + ++S+ +L+ + I + Sbjct: 147 TGTIISDWGGRLELEIDKKARIWARVSRKQKISILVLSSAMGLNLREILE-NVCYPEIFL 205 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + +A++E Y+ G+P E+ + FF R +L +GR Sbjct: 206 SFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFSESLCKELQKKFFH-QRCELGRIGRR 264 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 N L + + L DI+ LI ++ G G +DD++HL N+RIRSV ++ ++Q Sbjct: 265 NINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQ 324 Query: 464 FRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 + L R+E VK + L PQ+++ + P++ + FFG LSQ +D+ NPL Sbjct: 325 LGLALARLENVVKGTIGGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPL 384 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 ++I H R++S LGPGGLT A F +RD+HP+HYGR+CPI+T EG N+GLI SLS++A+ Sbjct: 385 TQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARI 444 Query: 582 NEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 ++G LE+P+ ++ + I +LS ++ Y+IA NS G E V R + Sbjct: 445 GDWGSLESPFYELFEKSKKARIRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQAVPARYR 504 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 E + ++V + Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K + Sbjct: 505 QEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCI 564 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 VGTG+ER VA+DSGV A+A+ G + Y D +IV+ N D + L Y RS Sbjct: 565 VGTGLERQVALDSGVPAIAEHEGKILYTDTEKIVLSGNGDTLS--------IPLIMYQRS 616 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 N+NTC++Q P V G+ +++G +LADG +T GELALG+N+ VA+MPW GYNFED++L+S Sbjct: 617 NKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFEDAVLIS 676 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 E +V D +T+ HI++ + T GPE IT +IP++ L LD++GIV +G+ V Sbjct: 677 ECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRNLDKNGIVMLGSWVET 736 Query: 880 GDILVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GDILVGK+TP+ E+ PE++LLRAI G + S K++ L++P G G VIDV+ + Sbjct: 737 GDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKK 796 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 G EI + + Q ++ + G I +L + Sbjct: 797 GGSSYNP--EIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPY 843 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 149/482 (30%), Positives = 228/482 (47%), Gaps = 67/482 (13%) Query: 871 VYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 V G + G IL G T GE L +L A + + +D+ L +S ++ Sbjct: 628 VRRGKCIKKGQILADGAATVGGELALGK--NILVAYMPWEGYNFEDAVL-----ISECLV 680 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----EELQILEAGLFSRIRAVLVAGGVE 985 ++T + K + + ++ K++ L+ L+ + + + G + Sbjct: 681 YGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRNLDKNGIVMLGSWVETGDIL 740 Query: 986 AEKLDK--------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 KL P DR L L + ++ L + + K+ Sbjct: 741 VGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKG--- 797 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 G P +I++VY++ KR I+ GDK+AGRHGNKG+ISKI P +DMPY ++G PVD+V Sbjct: 798 -GSSYNP---EIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMV 853 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 NPLGVPSRMN+GQI E LG+A + ++ + + Sbjct: 854 FNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQ--------------EASR 899 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 K+ S + + + G+ R++DGRT Sbjct: 900 KLVFSELYEASKQTANP-------------------------WVFEPEYPGKTRIFDGRT 934 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 G+ FE+PV +G Y+LKL H VD +H RS+G Y+LVTQQPL G+++ GGQR GEMEVWA Sbjct: 935 GDPFEQPVIIGKPYILKLIHQVDVIIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWA 994 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 LE +G A+ LQEMLT KSD + R ++ + G +P ESF +L++E+RSL + Sbjct: 995 LEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAQESFRLLVRELRSLALE 1054 Query: 1337 IE 1338 + Sbjct: 1055 LN 1056 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 70/366 (19%), Positives = 145/366 (39%), Gaps = 30/366 (8%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVFD 81 +P IQ + F +FI+Q GL I+ E Q +Y+L EP+ Sbjct: 12 IPGFNQIQFEGFYRFIDQ------GLIEELAKFPKIEDIDHEIEFQLFVETYQLVEPLIK 65 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 ++ +TYS+ L V L+ T ++++EQ +++G IPLM GT ++NG Sbjct: 66 ERDAVYESLTYSSELYVSAGLIW-------KTSRNMQEQRIFIGNIPLMNSLGTSIVNGI 118 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R++++Q+ +SPG+++ S+ +G +Y II G L+ E D K ++ R+ R+ Sbjct: 119 YRIVINQILQSPGIYYQSE---LDHNGISVYTGTIISDWGGRLELEIDKKARIWARVSRK 175 Query: 202 RKLPATIILRALNYTTEQILDLF-FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 +K+ ++ A+ +IL+ + ++ +K + ++ G + +E + Sbjct: 176 QKISILVLSSAMGLNLREILENVCYPEIFLSFLTDKEKKKI------GSKENAILEFYQQ 229 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA--KDYIDESTGELICAANMELS 318 G I + + + + + I + + + + ++ + Sbjct: 230 FSCVGGDPIFSESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILAA 289 Query: 319 LDLLA--KLSQSGHKRIETLFTNDL-DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 D L K + L + + + L + I +R Sbjct: 290 ADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQLGLALARLENVVKGTIGGAIRYKLI 349 Query: 376 PTREAA 381 PT + Sbjct: 350 PTPQNL 355 >UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax=Viridiplantae RepID=RPOB_OLTVI Length = 1416 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 260/749 (34%), Positives = 400/749 (53%), Gaps = 72/749 (9%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRL 75 R VP +++Q +SF +F+E GL PI + + EL + Y+L Sbjct: 6 RQNSFLVPDFIAVQRNSFSQFLES------GLIQEISKRNPITNSTKELELCFYPQYYKL 59 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 P + ++ ++ TYS L + ++L K +K Q V +G +PLMT G Sbjct: 60 SPPELNAKQSILKNKTYSCRLYIPVKLTNKR-------TKTLKLQWVVLGNLPLMTKRGH 112 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+ING+ RVI++Q+ RSPGV+F +H+ K+ Y A +I YRG+WL E D K +++ Sbjct: 113 FIINGSPRVIINQMVRSPGVYFKEV---SHADQKLTYYADLIAYRGAWLRIELDKKADIW 169 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 R+ + KLP I+L+AL IL L ++ Sbjct: 170 ARMKKTPKLPMLILLQALGLNLPTILKS----------------------LNYPKFFENL 207 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 +G ++QL+K V E +++D + ++ Sbjct: 208 GHDGN------------FMKQLKKGRVSSRSSSQELSGSFNLSEDVS-----LRLDDSSK 250 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + + + + + TLF G + ++ + L AL + ++ + Sbjct: 251 NMGAENVQRAPLQKSTKKATLF------GDFSRSSVYCKTQEEALWALYALTHPLKNPDE 304 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 T +S F + YDLS +GR++ N+ L E ++ D++ + LI++ Sbjct: 305 VTANLGKSFLYRKFMNSRVYDLSPLGRLRLNQKLNLSVNENITTITAQDLLFITNTLINL 364 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 G G+VDDID+L NRRIR+ GE+ +NQF +GL+R+E+ ++E+L L +IN Sbjct: 365 NYGVGKVDDIDNLKNRRIRTAGELVQNQFGIGLLRLEKIIREKLKQQQTK-LSIGSLINT 423 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 KPI+ A++EFFGSS LSQFMDQ NPL+EITHKRR+S+LGPGG+ RE AG +R +HPTHY Sbjct: 424 KPINGALREFFGSSPLSQFMDQTNPLAEITHKRRLSSLGPGGVNRETAGMAIRGIHPTHY 483 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEGN 613 GR+CPIETPEG N GL+NSL++Y++ N YGF+ETP+ KV G V + + SA +E Sbjct: 484 GRICPIETPEGQNAGLVNSLTIYSRVNPYGFIETPFYKVVKGQVQNSTRPIFFSAYQEEK 543 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 ++A + ++ + + + R E + +R+++DY+ VS Q++S+ SLIPFLEH Sbjct: 544 KLLAPGDIYANKLKYLPKSELPIRKLAEFTRTTREKIDYISVSPLQMISIATSLIPFLEH 603 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 DDANRALMG+NMQRQAVP + A+ P+VGTG+E VA DSG AK+ G V Y A +I Sbjct: 604 DDANRALMGSNMQRQAVPLMTAEAPVVGTGLECRVASDSGHVLQAKKSGFVTYSSAEKIT 663 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 I + P ++ + L+K S Q+ Sbjct: 664 I------LSPVDSTPAVPKLSKGNNSPQH 686 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 165/507 (32%), Positives = 251/507 (49%), Gaps = 58/507 (11%) Query: 843 TKLGPEEITADIPNVGEAALS-KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 TK + IT ++ + + + +V G V GD+L T G +L+ + L Sbjct: 942 TKTQLKPITYELQKLFRSNQDTSIMHRPVVREGEWVNRGDLLADNSTTVG-GELSLGKNL 1000 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS 961 L A + + +D+ L +S ++ +T +E+ + + + L+Q + Sbjct: 1001 LLAYMPWEGYNFEDAIL-----ISERLVSDDAYTSLHIERYEVEIRETKFGLEQITSQIP 1055 Query: 962 EELQ--ILEAGLFSRIRAVLVAGGVEAEKLDKLPR------DRWLELGLTDEEKQNQLEQ 1013 +E + L+ ++ + G + K+ +P+ ++ L + + + Sbjct: 1056 DEGKLSHLDHFGIAKPGTWVEEGDILIGKVAPMPQKNLSRYEKLLYDVVGKKISTTRDTS 1115 Query: 1014 LAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNK 1073 L ++ + V +Y+A KR+I GDKMAGRHGNK Sbjct: 1116 LRVPRGVSGRVIHVEILNAENLPP---EFVFEGPSRVNLYIAEKRKIHVGDKMAGRHGNK 1172 Query: 1074 GVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLK 1133 G+IS I P +DMPY +GTP+D+VLNPLGVPSRMN+GQI E LG+A + +G K Sbjct: 1173 GIISNILPRQDMPYLPDGTPLDMVLNPLGVPSRMNVGQIYECLLGLAGRYLGQKFKVRPF 1232 Query: 1134 QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEA 1193 + G + + S + + Sbjct: 1233 DE--------------IYGPQTSRSLVYSKLYEARLRTGQR------------------- 1259 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 L + + G+ RL+DGRTGE F +PVTVG YMLKL HLVD+K+HARS G YSL Sbjct: 1260 ------WLFNPASPGKTRLFDGRTGECFSQPVTVGQAYMLKLIHLVDEKIHARSIGPYSL 1313 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 VTQQPL G+++ GGQR GEMEVWALE +GAAYTLQE+LTVKSDD+ GR ++ ++I Sbjct: 1314 VTQQPLRGRSKHGGQRLGEMEVWALEGFGAAYTLQELLTVKSDDIKGREQVMESIQKNKT 1373 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELE 1340 G PESF VL++E++SL +++ + Sbjct: 1374 IS-LGTPESFKVLIRELQSLCLDVGVY 1399 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 110/287 (38%), Positives = 153/287 (53%), Gaps = 5/287 (1%) Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 TA +K+ G Y AS + D + Y L K RSNQ+T I P V G Sbjct: 915 TANSKKTGEALYKLASSESATKSMDFSTKTQLKPITYELQKLFRSNQDTSIMHRPVVREG 974 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 E V RGD+LAD +T GEL+LG+N+ +A+MPW GYNFED+IL+SER+V +D +T++HI+ Sbjct: 975 EWVNRGDLLADNSTTVGGELSLGKNLLLAYMPWEGYNFEDAILISERLVSDDAYTSLHIE 1034 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 R+TK G E+IT+ IP+ E LS LD GI G V GDIL+GKV P + Sbjct: 1035 RYEVEIRETKFGLEQITSQIPD--EGKLSHLDHFGIAKPGTWVEEGDILIGKVAPMPQKN 1092 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL--EIEEMQ 952 L+ EKLL + G+K S +D+SLRVP GVSG VI V++ + + + + Sbjct: 1093 LSRYEKLLYDVVGKKISTTRDTSLRVPRGVSGRVIHVEILNAENLPPEFVFEGPSRVNLY 1152 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + +K + G I +L + D P D L Sbjct: 1153 IAEKRKIHVGDKMAGRHGNKGIISNILPRQDMPY-LPDGTPLDMVLN 1198 >UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax=Heterosigma RepID=RPOB_HETCA Length = 1116 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 307/848 (36%), Positives = 443/848 (52%), Gaps = 45/848 (5%) Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 I L A + +K E K+ + +P L T SF + + + Sbjct: 79 IFLPAEVIYCDTESKYPTKKNRLEDIKEKVFIGQIP--LMTSTGSFIVNGCEGY---RNQ 133 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 I + + I V IA + + + G + E + + L Sbjct: 134 IIRCPGLYYKAEFLNNNIVSTVTIIAQRGSWLKFEFDKNGY-WVRIDKEKKISIFDFLEG 192 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 E L I+ L+ T +++ P + Sbjct: 193 LNINDEEILSGLK-----SIAPLLKYKKTQ----------EILKRNNDPDLKNLIEKIT- 236 Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 + Y L +GR+ NR L L+ DI ++ + R+ DDID Sbjct: 237 ---DPNSYSLGIIGRLNLNRRLGLNISTRVHTLTIHDIFGIIDFFLSARS--FVPDDIDD 291 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFG 507 L NRRIR+VGE+ +Q +GL R+ER + ER + ++P+ ++NA+PI +A++EFF Sbjct: 292 LRNRRIRAVGELITSQCEIGLNRLERNILERTNFSGSVRILPKTLVNARPIMSAIQEFFN 351 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 SSQLS +MDQ N LSE +KRRISALGPGGL +R RD+HPT YGR+CPIETPEG Sbjct: 352 SSQLSHYMDQTNLLSETANKRRISALGPGGLNADRVTVAARDIHPTQYGRLCPIETPEGQ 411 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT--DEIHYLSAIEEGNYVIAQANSNLDE 625 N+GL+++L+ YA+ N GF++TPY +V +G + + YL+A +E IA A+ D+ Sbjct: 412 NVGLVSTLASYARINRNGFIQTPYFRVENGKILTQQPLIYLTAEQENLK-IAPADVKRDQ 470 Query: 626 EGHFVEDLVTCRSKGE-SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 +G+ V+D + R + + + VD++ VS Q++SV ASLIPFLEHDDANRALMGAN Sbjct: 471 DGYLVDDFIVTRFQSKNFIITPSKLVDFISVSEIQIISVAASLIPFLEHDDANRALMGAN 530 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 MQRQAVP L KP+VGTG+E VA DS + +A + G+V+YV + +I IK E E Sbjct: 531 MQRQAVPLLYPRKPIVGTGIESQVAFDSRLVNIATKPGIVKYVSSQQIDIKNIEGEK--- 587 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 Y L KY SNQ+TC+NQ P V +G+ ++ G V+ADGP T GELALGQN+ VA+ Sbjct: 588 ----IAYKLIKYRPSNQDTCLNQRPLVWVGQSIKTGQVIADGPGTQSGELALGQNLTVAY 643 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 MPW GYN+ED+ILVS+++ ++ FT+IHI+E + TK G + IT+DIP V E Sbjct: 644 MPWQGYNYEDAILVSDKLDIQNLFTSIHIEECETEVQQTKTGEQVITSDIPLVSEKNCKN 703 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 LDE+GI+ +G V GDILVGK+TPKGE PE KLL+AIFG K D++DSSLRVP G+ Sbjct: 704 LDENGIIKVGKYVYPGDILVGKITPKGEIDQLPEAKLLKAIFGFKTPDMRDSSLRVPGGL 763 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 SG V+D+++F + K + + Q K + G I +L + Sbjct: 764 SGRVLDIKIFKKPKPGKVFGVGSKIRVFIAQISKLQVGDKIAGRHGNKGVISRILPHQDM 823 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 LP +++ L +++ Q E KR KI D++ Sbjct: 824 PF-----LPDGTSVDIILNPLGVPSRMN--VGQIFECLLGLAGDQLNKRFKILPFDEMYQ 876 Query: 1045 GVLKIVKV 1052 + + Sbjct: 877 NEASRILI 884 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 165/508 (32%), Positives = 250/508 (49%), Gaps = 62/508 (12%) Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV-GKVTPKGETQLTPEEK 900 G + I + L++ +V++G + G ++ G T GE L + Sbjct: 581 KNIEGEKIAYKLIKYRPSNQDTCLNQRPLVWVGQSIKTGQVIADGPGTQSGELAL--GQN 638 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 L A + + +D+ L + +FT +E+ + ++ + + D+ Sbjct: 639 LTVAYMPWQGYNYEDAILVSD-----KLDIQNLFTSIHIEECETEVQQTKTGEQVITSDI 693 Query: 961 S----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 +E I++ G + +LV ++D+LP + L+ + + Sbjct: 694 PLVSEKNCKNLDENGIIKVGKYVYPGDILVGKITPKGEIDQLPEAKLLKAIFGFKTPDMR 753 Query: 1011 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 L + K+ K + GV ++V++A ++Q GDK+AGRH Sbjct: 754 DSSLRVPGGLSGRVLDIKIFKKPKPGKV-----FGVGSKIRVFIAQISKLQVGDKIAGRH 808 Query: 1071 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 1130 GNKGVIS+I P +DMP+ +GT VDI+LNPLGVPSRMN+GQI E LG+A + + Sbjct: 809 GNKGVISRILPHQDMPFLPDGTSVDIILNPLGVPSRMNVGQIFECLLGLAGDQLNKRFKI 868 Query: 1131 MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 + + + + A +Q Sbjct: 869 LPFDEMYQNEASRILINQKLKDAAKKQNKP------------------------------ 898 Query: 1191 KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 L + G+I L DGRTGE+F+ PV VG Y+LKL HLV+DK+HARSTG Sbjct: 899 ---------WLFSAYSPGKILLSDGRTGEKFDNPVLVGRSYILKLAHLVEDKIHARSTGP 949 Query: 1251 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 YSL+TQQP+GGK+Q GGQRFGEMEVWALEA+GAAYTLQE+LT+KSDD+ GR + +IV Sbjct: 950 YSLITQQPVGGKSQNGGQRFGEMEVWALEAFGAAYTLQELLTIKSDDMQGRDDVLNSIVC 1009 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIE 1338 G + +PESF VL++E+ +LG++I Sbjct: 1010 GQEIPKSSIPESFKVLMRELNALGLDIT 1037 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 21/234 (8%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS-GNSELQYVSYRLG-EP 78 + +P L IQ SF F+ GL S+ PI + +L+ +P Sbjct: 7 ITKLPDFLEIQRSSFCWFL------LKGLSYELNSLSPIIDVNVKRVKLKLYPQEFVLKP 60 Query: 79 -VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK---DIKEQEVYMGEIPLMTDNG 134 + TY + + ++ + E+ T K + +++V++G+IPLMT G Sbjct: 61 GRTTPICAKQNDSTYGVRIFLPAEVIYCDTESKYPTKKNRLEDIKEKVFIGQIPLMTSTG 120 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 +F++NG E +Q+ R PG+++ ++ + ++ II RGSWL FEFD K+ Sbjct: 121 SFIVNGCEG-YRNQIIRCPGLYYKAE----FLNNNIVSTVTIIAQRGSWLKFEFD-KNGY 174 Query: 195 FVRIDRRRKLPATIILRALNYTTEQI---LDLFFEKVIFEIRDNKLQMELVPER 245 +VRID+ +K+ L LN E+I L + ++ L+ P+ Sbjct: 175 WVRIDKEKKISIFDFLEGLNINDEEILSGLKSIAPLLKYKKTQEILKRNNDPDL 228 >UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 Tax=Streptophyta RepID=RPOB_VITVI Length = 1070 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 253/767 (32%), Positives = 414/767 (53%), Gaps = 21/767 (2%) Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR-QLEKDDVKLI 285 K ++++ + + +P L + + ++ + + + + R +L+ + + + Sbjct: 89 KTSRDMQEQTIFIGNIP--LMNSLGTSIVNGLYRIVINQILQSPGIYYRSELDHNGISVY 146 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + G + + ++ + ++S+ +L+ S + I + Sbjct: 147 TGTIVSDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILE-NVCYPEIFL 205 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + SA++E Y+ G+P E+ + FF + R +L +GR Sbjct: 206 SFLNDKEKKKIGSKESAILEFYQQFACVGGDPVFSESLCKELQKKFF-QQRCELGRIGRR 264 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 NR L + + + L DI+ LI ++ G G +DD++HL N+RIRSV ++ ++Q Sbjct: 265 NINRRLNLDIPQNNTFLLPQDILAAADHLIGMKFGMGILDDMNHLKNKRIRSVADLLQDQ 324 Query: 464 FRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 F + L+R+E V+ + L PQ+++ + P++ + FFG LSQ +D+ NPL Sbjct: 325 FGLALIRLENVVRGTICGAIRHKLIPTPQNLVTSTPVTTTYESFFGLHPLSQVLDRTNPL 384 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 ++I H R+ S LGPGGLT A F +RD+HP+HYGR+CPI+T EG N+GLI SL+++A+ Sbjct: 385 TQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARI 444 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 +G LE+P+ ++++ + YLS + Y++A NS +G E +V R + E Sbjct: 445 GHWGSLESPFYEISERSKKVRMLYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQE 504 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 + +QV + Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K +VG Sbjct: 505 FLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVG 564 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 TG+ER A+DSGV +A+ G + Y D +I + G L Y RSN+ Sbjct: 565 TGLERQAALDSGVPVIAEHEGKIVYTDTDKI--------ILSGNGDTLSIPLVMYQRSNK 616 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 NTC++Q V G+ +++G +LADG +T GELALG+N+ VA+MPW GYN ED++L+SER Sbjct: 617 NTCMHQKAQVRRGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISER 676 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 +V D +T+ HI++ + T GPE IT IP++ L LD++GIV +G+ V GD Sbjct: 677 LVYGDIYTSFHIRKYEIQTHVTSQGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETGD 736 Query: 882 ILVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 ILVGK+TP+ E+ PE++LLRAI G + S K++ L++P G G VIDV+ + G Sbjct: 737 ILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGG 796 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 E + + Q ++ + G I +L + Sbjct: 797 SSYNP--ETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPY 841 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 151/482 (31%), Positives = 227/482 (47%), Gaps = 67/482 (13%) Query: 871 VYIGAEVTGGDILV-GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 V G + G IL G T GE L +L A + + +D+ L +S ++ Sbjct: 626 VRRGKCIKKGQILADGAATVGGELALGK--NVLVAYMPWEGYNSEDAVL-----ISERLV 678 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE----LQILEAGLFSRIRAVLVAGGVE 985 ++T + K + + ++ + L+ L+ + + + G + Sbjct: 679 YGDIYTSFHIRKYEIQTHVTSQGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETGDIL 738 Query: 986 AEKLDK--------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 KL P DR L L + ++ L + + K+ Sbjct: 739 VGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKG--- 795 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 G P + ++VY++ KR I+ GDK+AGRHGNKG+ISKI P +DMPY ++G PVD+V Sbjct: 796 -GSSYNP---ETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMV 851 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 NPLGVPSRMN+GQI E LG+A + ++ + + Sbjct: 852 FNPLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDEKYEQ--------------EASR 897 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 K+ S + + + G+ R++DGRT Sbjct: 898 KLVFSELYEASKQTANP-------------------------WVFEPEYPGKSRIFDGRT 932 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 G+ FE+PV +G Y+LKL H VDDK+H RS+G Y+LVTQQPL G+A+ GGQR GEMEVWA Sbjct: 933 GDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQGGQRVGEMEVWA 992 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 LE +G A+ LQEMLT KSD + R ++ + G P PESF +L++E+RSL + Sbjct: 993 LEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPNPEDAPESFRLLVRELRSLALE 1052 Query: 1337 IE 1338 + Sbjct: 1053 LN 1054 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 19/229 (8%) Query: 16 GKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSY 73 G + +P IQ + F +FI+Q GL I+ E Q +Y Sbjct: 4 GGNEGMSTIPGFNQIQFEGFCRFIDQ------GLTEELYKFPKIEDTDQEIEFQLFVETY 57 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 +L EP+ ++ +TYS+ L V L+ T +D++EQ +++G IPLM Sbjct: 58 QLVEPLIKERDAVYESLTYSSELYVSAGLIW-------KTSRDMQEQTIFIGNIPLMNSL 110 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GT ++NG R++++Q+ +SPG+++ S+ +G +Y I+ G L+ E D K Sbjct: 111 GTSIVNGLYRIVINQILQSPGIYYRSE---LDHNGISVYTGTIVSDWGGRLELEIDRKAR 167 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLF-FEKVIFEIRDNKLQMEL 241 ++ R+ R++K+ ++ A+ +IL+ + ++ ++K + ++ Sbjct: 168 IWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKI 216 >UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis solitaria RepID=C7BEC3_9CHLO Length = 1115 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 269/849 (31%), Positives = 428/849 (50%), Gaps = 63/849 (7%) Query: 207 TIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 T IL+A Y I +I+ + + P L + F I + ++ + + Sbjct: 59 TAILKAKTYACKLYIPVQLVNNTSKKIKTQWVLLTNFP--LMTKRGHFIINGSPRIIINQ 116 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 R + +++ K + + I+ + + + + +L L Sbjct: 117 IIRSPGIYYQEVFDKKKKR-KYYADLISFRGTWLRLEIDKKKAIWARMKKTPKISILIFL 175 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLR-VDPTNDRLSALVEIYRMMRPGEPPTR---EAA 381 G L + ++H ++ + + AL +Y + P + T Sbjct: 176 QAMGLTN--QLIFHSIEHSDFLKNSFSDEENLTTTEEALKLLYSEINPKKEETSIKSSMG 233 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 + F + YDLS +GR + N L + L+ DI+ + LI + +G G+ Sbjct: 234 QKFLFRKFMNPRTYDLSELGRSRLNEKLGLSISKSKTTLTPHDILYAINYLIKLEHGFGK 293 Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAA 501 +DDIDHL NRR+R+ GE+ +NQ +GL+R+E+ ++E+L + ++ Q++I K I+ A Sbjct: 294 IDDIDHLKNRRVRASGEILQNQISLGLIRLEKLIREKLKK-NRKNIILQNLITTKAINGA 352 Query: 502 VKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 ++EFFGSSQLSQFMDQ NPL+EITHKRR++++GP G++RE AG +R +HPTHYGR+CPI Sbjct: 353 LREFFGSSQLSQFMDQTNPLAEITHKRRLTSIGPNGVSRETAGMALRGIHPTHYGRICPI 412 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEGNYVIAQA 619 ETPEGPN GL+NS++ YA+ N GFLETP+ K G + ++ + SA EE ++ + Sbjct: 413 ETPEGPNAGLVNSITSYAKINSKGFLETPFYKTFKGQIQKKLKPLFFSAEEEETKILISS 472 Query: 620 NSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA 679 + N + + + R E+ +DQV+Y +S Q++S+ SLIPFLEH+DANR+ Sbjct: 473 DLNSSKFYFLPKKKIPTRFGTETQQTKKDQVEYSAISQIQMISIATSLIPFLEHNDANRS 532 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 LMG+NMQRQAVP ++ ++P+VGTG+E + DS + G + YV +I++ + Sbjct: 533 LMGSNMQRQAVPLIKPERPVVGTGLEGRIISDSDHALQTQFTGYISYVSGKKIIVYTIKK 592 Query: 740 -----------------------------------------------EMYPGEAGIDIYN 752 E+ + Sbjct: 593 KKNLSLNLQKSTKNSFFSEYLFPKKLKKNSTNKIKKNPLIKRNTLFIEIIKNSIKKNEIL 652 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 L + RSNQ T + + G +++ D+LAD + GE+ALG+N+ +A+MPW GYNF Sbjct: 653 LHTFQRSNQETLLTHYASICEGNWIQKNDLLADSSCSLKGEIALGKNILIAYMPWEGYNF 712 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 ED++L++ER+V ED +T+IHI+ RDTK G E+IT +P V + L LDE GI Sbjct: 713 EDAVLINERLVYEDIYTSIHIERFELEIRDTKFGLEKITNKLPEVPFSQLLHLDERGIAK 772 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 IG+ V G IL+GK+TP + L P EKLL I G+K +DSSLR P G++G +I V+ Sbjct: 773 IGSWVEEGTILIGKITPIKKKSLIPHEKLLYDIIGKKTPTTRDSSLRAPKGLTGRIIHVE 832 Query: 933 VFTRDGVEKDKRAL--EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 + + + + + + +K + G I +L + D Sbjct: 833 ILETKNLPPESLFEGPGRVHIYIAEKRKIQVGDKISGRHGNKGIISKILPRQDMPF-LPD 891 Query: 991 KLPRDRWLE 999 P D L Sbjct: 892 GTPVDMVLN 900 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 146/481 (30%), Positives = 236/481 (49%), Gaps = 59/481 (12%) Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 + G + D+L + L+ A + + +D+ L ++ ++ Sbjct: 671 ICEGNWIQKNDLLADSSCSLKGEIALGKNILI-AYMPWEGYNFEDAVL-----INERLVY 724 Query: 931 VQVFTRDGVEKDKRALE----------IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 ++T +E+ + + + ++ ++ +E I + G + +L+ Sbjct: 725 EDIYTSIHIERFELEIRDTKFGLEKITNKLPEVPFSQLLHLDERGIAKIGSWVEEGTILI 784 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 +K +P ++ L + + + L ++ + + Sbjct: 785 GKITPIKKKSLIPHEKLLYDIIGKKTPTTRDSSLRAPKGLTGRIIHVEILETKNLPPESL 844 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 PG V +Y+A KR+IQ GDK++GRHGNKG+ISKI P +DMP+ +GTPVD+VLNP Sbjct: 845 FEGPG---RVHIYIAEKRKIQVGDKISGRHGNKGIISKILPRQDMPFLPDGTPVDMVLNP 901 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 LGVPSRMN+GQILE LG+A + + ++ G + + + Sbjct: 902 LGVPSRMNVGQILECLLGLAGIFLNQQYKITPFDEKY--------------GPEASRSLV 947 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 S + + + L + G+I+L+DGR G+ Sbjct: 948 FSKLYEARLKTGQK-------------------------WLFNPNFPGKIQLFDGRNGKC 982 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 F++ T+G Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWALE Sbjct: 983 FDQHTTIGQAYILKLVHLVDDKIHARSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEG 1042 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +G+AY LQE++T+KSDD GR ++ I+ G PE+F VL+KE++SL ++I + Sbjct: 1043 FGSAYILQELITIKSDDTKGRHQVINAILKNKSIS-LGTPEAFKVLIKELQSLCLDIIVY 1101 Query: 1341 D 1341 Sbjct: 1102 T 1102 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 130/352 (36%), Gaps = 19/352 (5%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P + IQ +SF +++ GL ++ PI + N EL + Y+L P F Sbjct: 3 LPDFIEIQRNSFNALLKK------GLIKEIKNRSPITNIKKNIELFFYPELYQLNPPNFT 56 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 + ++ TY+ L + ++LV T K IK Q V + PLMT G F+ING+ Sbjct: 57 NKTAILKAKTYACKLYIPVQLVN-------NTSKKIKTQWVLLTNFPLMTKRGHFIINGS 109 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R+I++Q+ RSPG+++ K K Y A +I +RG+WL E D K ++ R+ + Sbjct: 110 PRIIINQIIRSPGIYYQEVFDKKK---KRKYYADLISFRGTWLRLEIDKKKAIWARMKKT 166 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 K+ I L+A+ T + I E F + L + +I + Sbjct: 167 PKISILIFLQAMGLTNQLIFHSI-EHSDFLKNSFSDEENLTTTEEALKLLYSEINPKKEE 225 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 K R+ + + + T ++ + Sbjct: 226 TSIKSSMGQKFLFRKFMNPRTYDLSELGRSRLNEKLGLSISKSKTTLTPHDILYAINYLI 285 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + I+ L + I + + E + R Sbjct: 286 KLEHGFGKIDDIDHLKNRRVRASGEILQNQISLGLIRLEKLIREKLKKNRKN 337 >UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=Q8I5X9_PLAF7 Length = 1450 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 200/1194 (16%), Positives = 414/1194 (34%), Gaps = 201/1194 (16%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 ++ + I ++ L+ E+L +++ + A + + Sbjct: 380 YDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNIC--------ATITSTTAESKSRC 431 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 V D ++ A E ++ + + L + Sbjct: 432 AIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQMIGSHKNYVNGILLSLYE--- 488 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE--DRYDLSAVGR 402 L + L AL+ I + +RP R A+ F ++ + + D+ G Sbjct: 489 ------LYNENIKTNLDALLYIGKKIRP-----RLLAKGFFSSMKEKQVKNEKDIIEEGL 537 Query: 403 MKFNRSLLREEIEGSGIL---SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM 459 +R LL + S I ++++++D N K E+DD D+ GN+R+ G++ Sbjct: 538 DFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQL 597 Query: 460 AENQFRVGLVRVERAVKERL-------------------------SLGDLDTLMPQDMIN 494 F R +K+++ + D+ +P+D+I Sbjct: 598 ISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIIT 657 Query: 495 AKPISAAVKEFFG-------SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +A + S +SQ + + + ++ I R+++ + R Sbjct: 658 RGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNS----QFEKGRKVSGP 713 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R + P+ +G +CP +TPEG + GL+ +L++ ++ + ++ L+ Sbjct: 714 RALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDSLT 773 Query: 608 AIE---EGNYVIAQANS---NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 E EG + + F++ + R G+ F +++ + + Sbjct: 774 GEEIYKEGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIYDNFLHNAI-YIS 832 Query: 662 SVGASLIPFLEHDDANRALMGANMQR-----------------QAVPTLRADKPLVGTGM 704 + G L L + ++ + + + L+ Sbjct: 833 TDGGRLCRPLIIIENGKSKLLPQHIKALENGTINFFDLLKSSVIEWIDVNEQNNLLIALN 892 Query: 705 ERAVAVDSGV------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 E +++ + T + G++ Y + ++ + M G+ I ++ R Sbjct: 893 ESDISLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAM--GKQAIGAIGYNQFVR 950 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 + + V +P+ + + + +L GQN VA M + GY+ ED+I++ Sbjct: 951 CDTLLYL----LVYPQKPLVKSKTI---EFINFEKLPAGQNAIVAVMSFCGYDIEDAIVM 1003 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 ++ + + +++ + + G +I P V + E I Sbjct: 1004 NKSSIDRGFGRCMSLRKHSVELKKYFNGSNDIVLPSPLVINKLQQQRKEREIKSEIKNEK 1063 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 D + K + K K +VK S N Sbjct: 1064 EKDGI--KQEHHHNNIDSKNNKSSYNNNVSKIDNVKKDSYGHKN---------------- 1105 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 ++ +I++M K +K S ++ + + + L + + +D Sbjct: 1106 -ISNESKDDIKKMANKDIRKYHSLDMDGVASIGYLIKEGQLYVNKFSPKNIKDHVKD--- 1161 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 + ++ ++ + +K + + LK+ K+ + R Sbjct: 1162 --IGKVDINDFKINEI-KYKSVYPSYIDKIIFTE----------NSEGLKLYKIIMRQTR 1208 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 + GDK + RHG KGV+ + EDMP+ E+G D+++NP G PSRM +G++LE Sbjct: 1209 LPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVAS 1268 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 AA G+ + ++ E + R Sbjct: 1269 KAAVMDGEYKYGSIFSGTPFEEIAEILFRYG----------------------------- 1299 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 F+ + + + Y G TGE E + +G +Y KL H+ Sbjct: 1300 --------FNCSSKELL-----------------YSGLTGEPLETYIFMGPIYYQKLKHM 1334 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 V DK+HAR+ G L+T+QP G+++ GG R GEME L AYG + L E L + SD Sbjct: 1335 VQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVC 1394 Query: 1299 NGRTK----------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 N + + MP + +L +E++++ + ++ + Sbjct: 1395 NVYICEDCGMMGYDLYCTFCKKCDKNIVIQMPYACKLLFQELQTMNVFPKIIVK 1448 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 67/466 (14%), Positives = 149/466 (31%), Gaps = 51/466 (10%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + P L V L+ ++S+ FI+++ + + A + + ++++ Sbjct: 243 WKLLPAYLKVKGLVKQHIESYNYFIKREIKT---IMNATTNKIIKSDIDEHFYVEFLDIT 299 Query: 75 LGEP---------VFDVQECQIRGVTYSAPLRVKL-----------------RLVIYERE 108 +G P Q C+ R +TYSAP+ V + RL + R Sbjct: 300 VGTPSVEENMIETKLTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRLPVMLRS 359 Query: 109 APEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 +E+ + +GE P G F++ GTERV++ Q S K + Sbjct: 360 DICVLNNKSEEELMKLGECPY-DPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNICA 418 Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEK 227 + S + + IILRA+ Y + ++I + Sbjct: 419 TITSTT---AESKSRCAIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQMIGSH 475 Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 + EL E ++ + + + + K++ +IE Sbjct: 476 KNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKDIIEE 535 Query: 288 PVEYIAGKVVAK-------DYIDESTGE------LICAANMELSLDLLAKLSQSGHKRIE 334 +++++ +++ D+ +++ ++ +AN + +D + Sbjct: 536 GLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAG 595 Query: 335 TLFTNDLDH-GPYISETLRVDPTNDRLSALVEIY-RMMRPGEPPTREAAESLFENLFFSE 392 L + + TL+ + Y +R + +F NL Sbjct: 596 QLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDI 655 Query: 393 DRY--DLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 + + E+ S +LS+ I + + + Sbjct: 656 ITRGMQTAISTGNWNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLN 701 >UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota RepID=C1E1U0_9CHLO Length = 1178 Score = 541 bits (1393), Expect = e-152, Method: Composition-based stats. Identities = 214/1378 (15%), Positives = 440/1378 (31%), Gaps = 270/1378 (19%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + + L QLDSF +FI+ + I + ++ Sbjct: 20 WTVISSFFEEKGLARQQLDSFNEFIQHTMQE-------------IVDEMSDFTIE----- 61 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 +E + E + ++ +++Y+ + P++T+ Sbjct: 62 -------PEE---------------QHMPGEEADGKGKKKYKVEFKQIYLSK-PMVTEA- 97 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 +G + + R + + + + + I G +++ D ++ Sbjct: 98 ----DGMTSTLFPKEARLRNLTYSAPLYIDMAKSTITTTDEIDATTGKYIE-TIDTEEYP 152 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 V K+P + + + +L + + L + + Sbjct: 153 KVFFG---KVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFIINGSEKVLIAQ----E 205 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + VYV + R+ + + + ++ + G + Sbjct: 206 KMSTNHVYVFEKRQPSKYMWVAECRSSPESGARAASSCMARLCHAPGTKDEAGVISVTIP 265 Query: 315 MELS-LDLLAKLSQSGHKRIETLFTNDLDHGP------YISETLRVDPT-NDRLSALVEI 366 + + L G + + + + + ++ + AL I Sbjct: 266 YIRTEIPLFVVFRALGFVADKDILEHLVYDFEDHEMMQLLRNSIEEAQVIQSQDVALDFI 325 Query: 367 YRM---MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 + + P + A + + L VG EG Sbjct: 326 GKRGSAVGVTRPKRIQYAREIL-------QKELLPHVGVN-----------EGCETKKAY 367 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLSL 481 + ++ +L+ G+ + DD DH GN+R+ G + FR +V + V+ + + Sbjct: 368 FLGYIVNRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQLFRKVTKDVRLYSQRCI 427 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRR 529 + + AK I++ +K + SQ +++ + S ++H RR Sbjct: 428 DSGKDIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLRR 487 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +++ + RE + R +H +H+G VCP ETPEG +GL+ +LS+ + G Sbjct: 488 LNS----PIGREGKLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSV-GSPSA 542 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN----LDEEGHFVEDLVTCRSKGESSLF 645 P + + + + +S N N E V+ L R K + Sbjct: 543 PLLEFLEEWSMENLEEISPSVIVNATKIFVNGVWVGVHREPAQLVQTLRNLRRKLDI-TI 601 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 V + + ++ + I L + N ++ + +K + G Sbjct: 602 EVGVVHDIALRELRLYTDYGRCIRPLFIVEDNHLVIKKKDIQMLY-----EKEITG---- 652 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 G ++YVD + + I L + Sbjct: 653 -------YTWNDLVATGCIEYVDTEEEETTM---------IAMTIDEL-----------V 685 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 Q G PS LG + + +P+ +N S + + Sbjct: 686 GQRINAEPGGVKHMYTHCEIHPSMILG-------ICASIIPFPDHNQ--SPRNTYQSAMG 736 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 + +++ R L P V A+ L Sbjct: 737 KQAMGMYVTNFQI--RMDTLAYVLFYPQKPLVTTRAMEHL-------------------- 774 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 +L ++ I + +D S+ + + +F R +++K+ Sbjct: 775 -----HFRELPAGVNVVVGIMCYTGYNQED-SVIMNQSSIDRGLFRSIFYRSFKDEEKKQ 828 Query: 946 LEIEEMQLKQAKKDLSEELQI-----LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 + + +L++ +D + ++ L+ + + K LP Sbjct: 829 GSLTKEELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGEDIIIGKTSPLP------- 881 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 +++ ++ ++ + + + +T D L+ VK+ + R Sbjct: 882 ---EDDPSAVSKRFTKRDCSTGMKNSETGIIDQVLLTTND----QGLRFVKIRVRSCRTP 934 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 Q GDK + RHG KG I EDMP+ G DI++NP +PSRM I Sbjct: 935 QVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRMTI----------- 983 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 G + ++ + + G Sbjct: 984 ----GQLVECLMGKVAAMM---------------------------------------GK 1000 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 F I ++L + G +Y+G TG + E + +G Y +L H+VD Sbjct: 1001 EGDATPFTPVTVESISDMLHMCGYQKRGNEVMYNGHTGRKLEAKIFLGPTYYQRLKHMVD 1060 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD---- 1296 DK+H+R G ++T+QP+ G+++ GG RFGEME + ++GAA L+E L +SD Sbjct: 1061 DKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYRI 1120 Query: 1297 DVNGRTKM-------------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 V + KN + ++ MP + +L +E+ S+ + L Sbjct: 1121 HVCETCGLIAVANLKNQTFECCKNPSERTKVVQVMMPYACKLLFQELMSMAVAPRLVT 1178 >UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RPOB_HELSJ Length = 1247 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 314/1365 (23%), Positives = 550/1365 (40%), Gaps = 217/1365 (15%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV--FPIQSYSGNSELQYVSYRLGEPVFDVQ 83 LL Q ++++ F+ GL+ AF+ F I++ + ++ + L + Sbjct: 30 NLLINQRENWRFFL------INGLKLAFKEFEHFKIKNNNFIIDIVFQEKFLFFKQI--R 81 Query: 84 ECQIRGV-TYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTE 142 + ++ V T+ + + + ++ + + + + + +G +P ++ +F I+G Sbjct: 82 QAYLKKVETFGYNIFIPI-IITQKILNKKNNLNLTFFKWLDLGILPSLSPKTSFYIDGIS 140 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA--RIIPYRGSWLDFEFDPKDNLFVRI-D 199 R + +Q +SPG+ FD D K S K A +II RGSW + +F+ I + Sbjct: 141 RAVSTQKKKSPGLMFDFDLTKKSSLEKREGEAFLKIIAPRGSWFKISYSEDHIIFIEIRN 200 Query: 200 RRRKLPATIILRALNYTTEQILDLF-FEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 K+P L AL ++ E I F + F++ NK N Sbjct: 201 IAYKIPIFTFLCALGFSLESIFQFFNYNINNFKLIPNKY-------------------DN 241 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 ++ I + L + ++YI + +T A + L Sbjct: 242 TNALIKARNDIFILYSDLLPLLNKTKKNFEIKYIINHYFFSYIWNSNTRYCGEATRLHLY 301 Query: 319 LDLLAKLSQSG--HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 + + LS + + I+ ++ + I+ + + ++ + G+ Sbjct: 302 NKVGSPLSLNSLFLEEIDFIYITKIFIYRLINNNFKDENNDNLKNMRFRNG-----GDYI 356 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 + + LF+ F L+ N S K+DI + KK Sbjct: 357 YLQTRQGLFDFESF------LNINLHNIENNSFFCNITTN---KKKEDIYSIKKKKNIKN 407 Query: 437 NGKGEVDDIDHL---GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI 493 ++ + H+ + G + +QF L Sbjct: 408 FNLSKISFLKHILLKSWKSFFLSGTL--SQFAENL------------------------- 440 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 NPLS ITH RR ++LGPG L + A EVR ++P+ Sbjct: 441 -------------------------NPLSYITHARRFTSLGPGSLKKAEASIEVRSINPS 475 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD---EIHYLSAIE 610 + GRVCPIETPEG N GL++S S+Y+ G L P+ + + + + E Sbjct: 476 YNGRVCPIETPEGFNAGLVHSFSLYSFKGVNGELLLPFYFIYKNIKQSYYLPPIFFNIEE 535 Query: 611 EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 E N I + ++ F+ ++ R+ ++ + +S ++S+ SLIPF Sbjct: 536 ESNQSIITGDLIHEKWNDFLNKKLSLRNNFHLDKNDISKISFQSLSPYHMISLATSLIPF 595 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 LEH+DANRALMG+NMQRQ VP L A +V TG++ D +++ G Sbjct: 596 LEHNDANRALMGSNMQRQTVPVLGAHNFIVRTGLDTKFFSDISSIPISQINGF------- 648 Query: 731 RIVIKVNEDEMYPGEAGIDI--YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 N Y + I + + ++N N+ ++GD L + Sbjct: 649 NFESNNNYCYFYKIDNLITLNNISYNYIKKTNHNSLYINESIKKKNPWHQQGDFLINNSV 708 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL---------ACV 839 + G+LALG N+ +A++PW+GYN+ED+++++ER V + T++HI L Sbjct: 709 IENGKLALGPNLLLAYLPWHGYNYEDAVIINERCVSQKILTSLHIITLTNSLELAYREIN 768 Query: 840 SRDTKLGPEEITADI---------------PNVGEAALSKLDES---GIVYIGAEVTGGD 881 + + +I N + K + S + IG + GD Sbjct: 769 KKKEFFYEVPVKLEILFSFFAPFYYNLKYYKNQEFSQFEKKNPSYYTNNINIGTFLKKGD 828 Query: 882 ILVGKVTPK------GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 + K + Q LLR F D K+ Sbjct: 829 CIFSKCRIRFSFSRELRLQYKELFILLREAFPTF-EDFKN-------------------F 868 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + DK +++ + K+ + ++ + + + + Sbjct: 869 ANIFAYDKYKQKLDRKKQKKNTRLKTDNFIFNKNSTLFKKHKL----KALINYYNIEDST 924 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 + + L+++ Y + F+ + ++ + + K + + + Sbjct: 925 IYAQKNQEGLIISKHLKKVPMTYTSI-TPFDLEEFLSTKESKKKEYYNLFFTKSINIEIL 983 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 R IQ GDK AGRHGNKG+ISKI PI +MP +GTP+DI+LNPLG+PSRMN+GQI E+ Sbjct: 984 QLRDIQLGDKCAGRHGNKGIISKICPINEMPLLPDGTPIDIILNPLGIPSRMNVGQIFES 1043 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 LG+A + + + +Q G + + LS ++ Sbjct: 1044 LLGLAGFYLNETYTINIFDEQ--------------FGLEASRSFVLSKLYKASILSNKP- 1088 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 L +G+ + DG TG+ F++P+T+GY +LKL Sbjct: 1089 ------------------------WLFLKKNAGKTNIIDGLTGKYFQQPITIGYSSILKL 1124 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DK+H RS G YS +T QP GK+ GGQR GEME+WAL+ YGA++ LQE+ T+KS Sbjct: 1125 IHMVTDKLHGRSIGGYSTLTLQPTKGKSLLGGQRVGEMELWALQGYGASWALQELYTLKS 1184 Query: 1296 DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 D V R + ++N ++ + E + + ++ L E+ SL I+ + Sbjct: 1185 DLVEAR-QHFQNYINSFNI-ESNIYDRNDISLTELESLIISDTFK 1227 >UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y994_COPPD Length = 1293 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 291/857 (33%), Positives = 428/857 (49%), Gaps = 44/857 (5%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + I + + ++V E ++ +G V V ++ R + K V Sbjct: 327 GDTSINIFTVSTVWDQIVAALRETELLEDVLDKDGSVVVRANSPMSTRDVETFFKSHVIP 386 Query: 285 IEVPVEY-IAGKVVAKDYIDESTGELICAA----NMELSLDLLAKLSQSGHKRIETLFTN 339 + +Y I KV + + G +I + L +++ T Sbjct: 387 MVRSGKYDIKVKVPVRGQMKAYEGWVIADDVEVDGESVEGRALDPELAKSLRKVSDFVTL 446 Query: 340 DLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSA 399 + + + SA VE+ + R GE + AE F L F R + Sbjct: 447 QVPIKRFF-----------QGSAFVELEKR-RTGETLSEREAERRFRQLLFDPKRNQIGR 494 Query: 400 VGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM 459 VG + + L+ + + ++ L+ G DDIDHL NRR+R++GE+ Sbjct: 495 VGAYHIEHRYGIKVEDS---LTDEMLAELGGILLAYCIGSTMPDDIDHLSNRRVRAIGEL 551 Query: 460 AENQFRVGLVRVERAVKERL-SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 F R+ + ++ + + L ++ ++ V F S++ Q ++ Sbjct: 552 YYEVFANAFERLVKTARDEMINQQKEPELKLHRVLAQNILTQYVWRFVNPSEVHQLLEYT 611 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL+EITHKRR++A+G GGL+RE A EVRDVH THYGR+CPIETPEG NIGLI SL+ Y Sbjct: 612 NPLTEITHKRRVTAMGRGGLSREHASIEVRDVHHTHYGRLCPIETPEGQNIGLILSLATY 671 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 A+ NE+GFL TPYR+V +G VTDEI ++ A+EE I A++ L+ D V R Sbjct: 672 AKLNEHGFLITPYRRVVNGEVTDEIVWMDALEEEKEYIVPADTPLNGR-KINVDRVLARH 730 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + + +DQ+ MDVS Q S+ ASL+PFLE DDA RALMG+NMQRQAVP + A+ P Sbjct: 731 RSQWVAVDKDQITLMDVSVTQPFSISASLVPFLESDDAIRALMGSNMQRQAVPLINAESP 790 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 +V TGME+ V A + G V YVD ++ IK + Y L + R Sbjct: 791 IVATGMEKHVVESLDYVIKANQDGTVSYVDGKQVKIKAEDGYE-------KTYQLKVFDR 843 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 +NQ+T ++ P V G+ V++GDVLA+ ++D GELALG+N+ VAFMPW GYN+ED+IL+ Sbjct: 844 TNQDTVVHFRPKVKQGQKVKKGDVLAEAITSDNGELALGRNVLVAFMPWEGYNYEDAILI 903 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLG-PEEITADIPN-VGEAALSKLD-ESGIVYIGA 875 S+R+V++D FT++HI+E + G EEIT D+P+ V E LD E+GIV +G Sbjct: 904 SKRLVKDDVFTSVHIREYMVEVAELSRGRSEEITYDLPDSVSEQEKRYLDPETGIVMVGT 963 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 EV GDILVGKVTPK E + E KLL AIFGEK VKD+SLRVP G V+D Q+ Sbjct: 964 EVKPGDILVGKVTPKEEEDKSIETKLLSAIFGEKLDKVKDTSLRVPPAEGGIVVDTQILR 1023 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + ++ ++ + Q +K + G + VL + D P D Sbjct: 1024 N----SETGKIKAVKVFVAQKRKIQPGDKMSGRHGNKGVVSRVLPEEDMPF-LPDGRPVD 1078 Query: 996 RWLE-LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL---APGVLKIVK 1051 L LG+ QL +L F+ ++ +G G+ + K Sbjct: 1079 IVLNPLGVPSRMNIGQLLELHLGLAAKVLGFKVEVPIFSNFGVEGVKELLREAGLPENGK 1138 Query: 1052 VYLAVKRRIQPGDKMAG 1068 V L R G++ Sbjct: 1139 VVLRDGRT---GEEFLS 1152 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 164/448 (36%), Positives = 224/448 (50%), Gaps = 81/448 (18%) Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL------------- 946 +L A + + +D+ L ++ VFT + + + Sbjct: 884 NVLVAFMPWEGYNYEDAILISK-----RLVKDDVFTSVHIREYMVEVAELSRGRSEEITY 938 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 ++ + +Q K+ L E I+ G + +LV E+ DK + L ++ Sbjct: 939 DLPDSVSEQEKRYLDPETGIVMVGTEVKPGDILVGKVTPKEEEDKSIETKLLSAIFGEKL 998 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 + + L E + ++ + G +K VKV++A KR+IQPGDKM Sbjct: 999 DKVKDTSLRVPPAEGGIVVDTQILR---------NSETGKIKAVKVFVAQKRKIQPGDKM 1049 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 +GRHGNKGV+S++ P EDMP+ +G PVDIVLNPLGVPSRMNI G Sbjct: 1050 SGRHGNKGVVSRVLPEEDMPFLPDGRPVDIVLNPLGVPSRMNI---------------GQ 1094 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + L +V G + P+ Sbjct: 1095 LLELHLGLAAKVL---------------------------------------GFKVEVPI 1115 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F +KELL+ LP +G++ L DGRTGE+F +TVGYMYM+KL H+V+DK HAR Sbjct: 1116 FSNFGVEGVKELLREAGLPENGKVVLRDGRTGEEFLSDITVGYMYMMKLIHMVEDKWHAR 1175 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 STG Y+LVTQQPLGG+A FGGQR GEMEVWALEAYGA+Y LQEMLTVKSDDV GR K Y Sbjct: 1176 STGDYALVTQQPLGGRAHFGGQRLGEMEVWALEAYGASYVLQEMLTVKSDDVEGRKKAYI 1235 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 + P +PESF VL E+++LG Sbjct: 1236 ALTRNQPLEPPQLPESFKVLELELKALG 1263 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 153/371 (41%), Gaps = 41/371 (11%) Query: 6 TEKKRIRKDFGKRPQV----LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 T +K+I + GK + + P L + +S+ F+ + GL F + FPI+ Sbjct: 2 TARKKIWEVSGKVSKPTLSEVPYPDFLEAKKNSWNWFVTE------GLRELFNTYFPIED 55 Query: 62 YSGNSELQYVSYRL--------GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 G + + Y G P+ ++ TY+ L VK+R+ E Sbjct: 56 AKGRWRIDILDYYFENDVADETGNPINTPEDAIREHATYAKRLIVKVRVHNSE------- 108 Query: 114 VKDIKEQEVYMGE-IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 +I E+E +G+ IP MTD+G F++NG+ RV ++QL RSPG++ ++D L Sbjct: 109 TGEIVEKEHVLGKRIPWMTDSGDFIVNGSRRVTLNQLVRSPGIYLEADGS--------LR 160 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTEQILDLFFEKVIFE 231 +IP RG+W+D E+D K+ L + +DRR +KL LRAL Y ++ + + + Sbjct: 161 RISLIPQRGTWIDIEYDGKNPLSIVLDRRSKKLNLATYLRALGYMSDDEIRTRLKDSALK 220 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 +E + + N Y R + + + + L + V+ Sbjct: 221 ------WIEFFLNDAGFDNKKLFVSQNLVSYFNYLRSYYSSTAQTVSEFRNVLENLDVDD 274 Query: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 + + + ++ E+ + + S + + ++ L + G Sbjct: 275 QLLERLEEYNVESVLDEIAESYASQYSGLEILNIFKTIVDENLKLLIDKTIDGDTSINIF 334 Query: 352 RVDPTNDRLSA 362 V D++ A Sbjct: 335 TVSTVWDQIVA 345 >UniRef50_B7FVG3 DNA-directed RNA polymerase n=5 Tax=Eukaryota RepID=B7FVG3_PHATR Length = 1212 Score = 512 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 224/1406 (15%), Positives = 424/1406 (30%), Gaps = 312/1406 (22%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIE---QDPEGQYGLEAAFRSVFPIQSYSGN------ 65 + + L+ QLDSF +FI+ Q+ G + + Y Sbjct: 32 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVGYDDEAYDREQ 91 Query: 66 -------SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 E+ + L +P +GT+ ++ Sbjct: 92 EKETKFVFEIHFGQVYLSKPT---------------------------TVEKDGTITNMF 124 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 E + MT + ++ V ++Q + G+ + Sbjct: 125 PHE---ARLRNMTYSAPLYVD----VDLNQ----------------YQVGREVNVNDPSE 161 Query: 179 YRGSWLDFEFDPKDNL-FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 G + E K+ L +V I R ++ + + + +++ + + + Sbjct: 162 DLGEPVATEHAKKEFLGYVPIMLRSLF--CVLSDKDDADLSDLGECVYDQGGYFVINGSE 219 Query: 238 QMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 ++ + ERL + +K + I + + V YI Sbjct: 220 KVIIAQERLSNNHVY--------AFKKKQPSKFSWVIETRSQVENSTRPVSTLYIQMYHK 271 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN------DLDHGPYISETL 351 E + + ++ G+ + + D + +L Sbjct: 272 GGRGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSL 331 Query: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 R ++ T+E + + + L VG Sbjct: 332 EEAFVIQRQDVALDFIGRRGSARDVTKEDRMRYAQAIL---QKEVLPHVG---------- 378 Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 E I + KL+ R G+ E DD DH G +R+ G + FRV ++ Sbjct: 379 -TEEHCETKKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGLFRVLFRKL 437 Query: 472 ERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-----------SQFMDQN 518 + V++ L + I + I+ +K + SQ +++ Sbjct: 438 TKDVRKHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNWGDKGMATKAGVSQVLNRL 497 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 S ++H RR + L R + R +H TH+G VCP ETPEG +GL+ +L++ Sbjct: 498 TYASSLSHLRRCNT----PLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALM 553 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS-NLDEEGHFVEDLVTCR 637 A G + P + + T+ + + VIA+ N+ + G++V + Sbjct: 554 AYITT-GTAQVPVLEFLEEFSTENLTDILPS-----VIAEPNTCKIFVNGNWVGIHRDPK 607 Query: 638 SKGESSLFSRDQVDY-MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 + E+ R VD +VS + ++ I + + R L Q+ A ++ Sbjct: 608 ALEETFRSLRRMVDIDAEVSIVRDIADKEVRI-YTDAGRICRPLFVVQEQKLA---IKKH 663 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV------------------NE 738 + GM G+V+Y+D + Sbjct: 664 HIMQLQGM--DPNEKKLTWTDLLMEGLVEYIDTEEEETTMVAMEPNDLDSDDSYSSTYTH 721 Query: 739 DEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELA 795 E++P I + +S +NT + M ++G + A + +A Sbjct: 722 CEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG-------IYASNYQVRMDTMA 774 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP 855 + + + + +H +EL Sbjct: 775 H-------VLHYPQ----------KPLCTTRAMEFLHFRELPSGVN-------------- 803 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 +G V G E+ L+ + Sbjct: 804 ---------------CIVGILVYTG--------------YNQEDSLILNQSAIDRGLFRS 834 Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 S R ID + + G + E+ + + E L+ Sbjct: 835 SYYRCY-------IDQEKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDDDGLVAP 887 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 + V K + G+ + +++ + + Sbjct: 888 GTRVSGDDVLIGKTAPID----ATAGMP--------SRYSKRDCSTSMKANEHGIVDNVL 935 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 I+ + + KV + R Q GDK A RHG KG I EDMP+ G D Sbjct: 936 ISTTKE----GYRFTKVRIRNVRTPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGIVPD 991 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I++NP H + I I +L + Sbjct: 992 IIVNP---------------HAIPSRMTIAQLIECLLGKVV------------------- 1017 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 + +G F +I L G LY G Sbjct: 1018 --------------------VFQGCEGDATPFTDVTVEDISTRLHAMGYQRHGNEALYQG 1057 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 TG V +G + +L HLVDDK+H+R+ G +++T+QPL G+++ GG R GEME Sbjct: 1058 HTGRPLNARVFIGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMER 1117 Query: 1276 WALEAYGAAYTLQEMLTVKSD----DVNGRTKM------------YKN---IVDGNHQME 1316 L +G A +++ V SD + R + ++ + + Sbjct: 1118 DCLITHGCANFMRDRFFVNSDQYRIHICERCGLTAQANLKKMTYECRSPMCVGRPTQICQ 1177 Query: 1317 PGMPESFNVLLKEIRSLGINIELEDE 1342 +P + +LL+E+ S+ I + + Sbjct: 1178 VEIPYAAKLLLQELNSMCIQTRIYTK 1203 >UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Scenedesmus obliquus RepID=RPOB1_SCEOB Length = 726 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 222/736 (30%), Positives = 363/736 (49%), Gaps = 41/736 (5%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P L+ IQ F +E+ G+ PI + E+ + YRL +P + Sbjct: 8 IPDLVEIQRQGFFYLLEK------GIIEEISKRNPITCFEKQIEIFFYPQYYRLTKPFYS 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 +Q+ +Y + + ++L + K I + + + PLMT+ G F++NG+ Sbjct: 62 IQQAIFYKKSYVSKFYIPVQLT-------DRKTKRIFLKWILLAHFPLMTNRGHFLLNGS 114 Query: 142 ERVIVSQLHRSPGVFFDSD--------KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 RVI++QL RSPG++F + + S+ + A II +G+WL E D + Sbjct: 115 ARVIINQLVRSPGIYFRENMHEIFSNKWSEKPSTTFRRFYADIICLKGTWLRIECDKDFS 174 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVI----FEIRDNKLQMELVPERLRGE 249 ++ ++ + K+P L + + + IL+ ++ + F K+Q + L+ Sbjct: 175 MWAKMKKGPKIPLLWFLLGMGLSEKYILNSVYKPMNLLQSFTKEMEKMQKSKSSKELKYP 234 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 S +A ++ + T R L+K++ K + K+ AK + Sbjct: 235 YISSTKQAWEQIQKLFKLKKTLRKFSFLKKNEEKPKTFIFGQSSTKIEAKVVFSD----- 289 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 A N + + S ++T F E + + T ++ Sbjct: 290 FAAFNNSVKRENTVFASNDDTFLVQTSFETKKKKNTRKKENFQKNKTQKTTKLSLQNKEK 349 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 + E F N F + YDL GR N+ L L+ D++ Sbjct: 350 RVASKLEAYELGRKWFANKFMNPRTYDLGKQGRWLINKKLGLTIPLEQTTLTALDVLTAT 409 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-------LG 482 L+ I +G E+DDIDHL N+R+R+ GE + F +GL+R+E++++ +L+ Sbjct: 410 DSLMKIEDGFFEIDDIDHLKNKRVRTAGEALQEIFSIGLIRLEKSIRLKLNGNGQQSFFQ 469 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 +++ +PI+ A +EFFG+ LSQFMDQ NPL+EITHKRR+S+LGPGG++R+ Sbjct: 470 KTSFFNFDSLMSTRPINGAFREFFGTHPLSQFMDQINPLAEITHKRRLSSLGPGGVSRDT 529 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 A +R +HP+HYGR+CPIETPEG N GL+NS++ Y++ + +G+LE+P+ KV G V Sbjct: 530 ATLAIRGIHPSHYGRICPIETPEGKNTGLVNSITTYSKISFHGYLESPFYKVYKGQVQRN 589 Query: 603 I--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 + YLS ++ ++ A + NL G + + R ++ M VS Q+ Sbjct: 590 LGVFYLSPDKDDHFQTATPDLNLTPLGFLPKKPIPVRIGKRFVRMKTHKLALMGVSPLQM 649 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 +SV S IPFLEHDDANRALMG+NMQRQAVP +R ++PL+GTG+E V DSG +AK Sbjct: 650 ISVATSFIPFLEHDDANRALMGSNMQRQAVPLIRPERPLIGTGLEARVVSDSGHAILAKT 709 Query: 721 GGVVQYVDASRIVIKV 736 G + Y S+I + Sbjct: 710 SGYIVYSSGSKIYLYT 725 >UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Stigeoclonium helveticum RepID=RPOB1_STIHE Length = 696 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 226/732 (30%), Positives = 362/732 (49%), Gaps = 57/732 (7%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGE 77 + +P + +Q SFQ+F+E GL PI + + E+ Y+L Sbjct: 4 EKYFIPDFVELQRRSFQRFLE------TGLIEELNKRNPITNSQKDLEILLYPEYYKLAP 57 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P ++ + + TYS L V +L + K I + V +G+IPLM+ G FV Sbjct: 58 PRWNSLDAILLSKTYSCRLYVPAQLTNRK-------TKQIMFKWVQLGDIPLMSKRGHFV 110 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL---YNARIIPYRGSWLDFEFDPKDNL 194 +NG RVI++Q+ R PG++F + SS K L Y A I RG+WL D + + Sbjct: 111 VNGAARVIINQIVRGPGLYFSEIQYNVDSSKKTLVRRYAAEFISMRGTWLRLSIDKEKMI 170 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + + + K+P L + T + + + K + + L+ + + D Sbjct: 171 WAELKKTPKIPLVWFLLGMGLTEKILFQSLTQ--------PKRLLYNYLDYLKIDNLAID 222 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 +++ + ++ +L ++K ++ ++ +V Sbjct: 223 VKSQNDAFAKRALLRELLLKSKLNSSNIKTLKNSKDFKPLLLVN---------------- 266 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 D+ +++ K N + + N L AL IY + + Sbjct: 267 -----DIYSEMHSYKEKENRRYPLNSQNGDLADEKEKIPYYANSSLKALELIYSKITNTK 321 Query: 375 PPTREAAE-------SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 T + F + YDL GR+ N+ L L+ D++ Sbjct: 322 KITNLNKKFFAKQGQKWIFKKFMNPRTYDLGLHGRLSLNKKLSLSLPLSQRTLTMYDVLV 381 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTL 487 + L+ + G DDID+L NRR+R+ ++ + Q +GL+R+E+ ++ + + Sbjct: 382 ATEHLLRVEQGLLGTDDIDNLKNRRVRTSSDLIQMQIGIGLLRLEKNIRSKFTTIKG-VP 440 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 + KP++ A+KEFFG++ LSQFMD NPL+E+THKRR++ LGPGG++R+ A ++ Sbjct: 441 KINYFFSTKPLNGALKEFFGTNPLSQFMDMINPLAEMTHKRRLTTLGPGGVSRDTATMDI 500 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHY 605 R +HPTHYGR+CP+ETPEG N GL+N+L+ +A+ N G +ETP+ KV G V + Y Sbjct: 501 RGIHPTHYGRICPVETPEGKNAGLVNALTTFARVNPEGLIETPFYKVYKGQVQKKAGFFY 560 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 LSA +E +IA + NL + G + L+ R E + R+ VD+M VS Q++SV Sbjct: 561 LSAEKEEKAIIAAGDLNLSKTGFLPKGLIPVRKFDEFTKVLRNYVDFMSVSPLQMISVAT 620 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 SL+PFLEHDDANRALMGANMQRQAVP +R+++ +VGTG+E +A DSG AK GG+V Sbjct: 621 SLVPFLEHDDANRALMGANMQRQAVPLVRSEQAIVGTGIETRIASDSGHVIRAKAGGLVG 680 Query: 726 YVDASRIVIKVN 737 YV +I I Sbjct: 681 YVSGQKIRIYTF 692 >UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carteri RepID=B8R1A0_VOLCA Length = 652 Score = 502 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 247/589 (41%), Positives = 334/589 (56%), Gaps = 94/589 (15%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ Q P V G+ +E GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 118 YNLETYRRSNQDTCLIQKPAVKEGDWIETGDLLADSASSVGGELAIGHNIIVAYMPWEGY 177 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T++HI+ ++ DTKLG E+IT +IP+ E +S LD++GI Sbjct: 178 NYEDAILINERLVYEDLYTSVHIERYEVLTTDTKLGSEQITREIPDTNENEISHLDKNGI 237 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGKVTP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 238 AKIGSWVEEGDILVGKVTPFNIKTLTPQQKLLYKIFNKQLSATKDSSLRAPKGIKANVIN 297 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 V + + +E + + + Sbjct: 298 VNILKKQKIELNNKDKK------------------------------------------- 314 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 ++ +T + K N L Q +++ +RRK + AP V Sbjct: 315 --------KIVITKKAKINLLTQQTISVQNNQNQNTNNTNGRRRKREISNTYAPS---YV 363 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 +YLA KR+IQ GDKMAGRHGNKG+IS+I P +DMP+ +GT VDIVLNPLGVPSRMN+G Sbjct: 364 HIYLAEKRKIQVGDKMAGRHGNKGIISRILPRQDMPFLPDGTSVDIVLNPLGVPSRMNVG 423 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 QI E LG+A + +G+ + GAD + LS D Sbjct: 424 QIYECLLGLAGRYLGEHYKIPPFDEMY--------------GADASRSFVLSKLYDARKK 469 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 L L D G+IRL+DGR E F++ VTVG Sbjct: 470 TG-------------------------LNWLFDPNHPGKIRLFDGRNSECFDQTVTVGIA 504 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y+LKL H+VDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWA+E YGAA+ L EM Sbjct: 505 YVLKLVHMVDDKLHARSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWAIEGYGAAFVLSEM 564 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 LT+KSDD+ GR ++KN+++ N G PESF VL+ E+++L ++I L Sbjct: 565 LTIKSDDMTGRQNLWKNLIENNDIS-LGSPESFKVLVCELQALCLDIGL 612 >UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-terminal section n=3 Tax=Eukaryota RepID=RPOB1_CHLRE Length = 822 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 225/760 (29%), Positives = 361/760 (47%), Gaps = 98/760 (12%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGE 77 + + IQ +SF +E+ G+ F PI + E+ + Y+L Sbjct: 120 NKYLISDFVEIQRNSFFTLLEK------GIIEEFSKRNPITNSKKTMEIFFYPDYYQLTP 173 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P + + I+ +Y++ L + ++L + IK + VY+G+IPLMT G F+ Sbjct: 174 PEYSPSQAIIKSKSYTSKLYIPVQLTDKSKNI-------IKLKWVYIGDIPLMTKRGHFI 226 Query: 138 INGTERVIVSQLHRSPGVFFDSDK--------GKTHSSGKVLYNARIIPYRGSWLDFEFD 189 +NG RVIV+Q+ RSPG+++ + + Y A +I RG+WL E D Sbjct: 227 LNGCARVIVNQMVRSPGIYYQKKIYENFSNKWSEKPENTFTRYFADLICNRGTWLRIEMD 286 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 + ++ ++ R K+P L A+ T + +L + I ++ + + L Sbjct: 287 KYNKIWAQMKRVPKIPIMWFLIAVGLTDKIVLKTVMDSKILLYNLDEDPLNPRKKPLPYV 346 Query: 250 T-ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 A + K + + + LE + K A Sbjct: 347 KTPPAAWSAIYNIVFAKKIKAQEKAKKMLE--LTEGNPSSKSQTKNKTSA---------- 394 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + +L++ ++ + I+TL ++ Sbjct: 395 ----SKKSKTLNVANTKGKTPAENIKTLSELIDLEKALFLKS------------------ 432 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 E N F + YDL VGR+ FNR L + L+ D++ Sbjct: 433 ----------EQGRKWIFNKFMNPRTYDLGKVGRVNFNRKLKLSISQDITTLTPQDLLAA 482 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG------ 482 LI + G E+DDIDHL NRR+R+ GE+ + Q VGLVR+E+ ++E+++ Sbjct: 483 TNNLILVSKGLRELDDIDHLKNRRVRTSGELIQIQIGVGLVRLEKTIREKMTYASGLSSL 542 Query: 483 ----------------------DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP 520 + L ++IN KP + A++EFFG+S LSQFMDQ NP Sbjct: 543 PSQKFAFRSSKQRNQSPVGDAENATQLTIGNLINTKPFNGALREFFGTSPLSQFMDQINP 602 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L+E+THKRR+S++GPGG+TR+ A +R +HP+HYGR+CP+ETPEG N GL+NSL+ YA+ Sbjct: 603 LAELTHKRRLSSMGPGGVTRDSATLAIRGIHPSHYGRICPVETPEGKNTGLVNSLTAYAR 662 Query: 581 TNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 N G++ETP+ +V G V + +++ SA +E + + E G + + R Sbjct: 663 VNAAGYIETPFYRVYKGQVQKKTGLYFFSAKQEEKIKLGAPDLYTSEIGFLPKASIPVRI 722 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + + SR+++ Y+ V+ Q++S+ SLIPF EHDDANRALMG+NMQRQAVP L+ +P Sbjct: 723 VEDFTKISRNEIQYVGVAPIQMISIATSLIPFFEHDDANRALMGSNMQRQAVPILKPQRP 782 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 +VGTG+E DSG AK G+V Y + I+I + Sbjct: 783 IVGTGLEARAVSDSGHVITAKSSGIVMYTSSKEIIIYSLQ 822 >UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=A8B827_GIALA Length = 1235 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 180/1099 (16%), Positives = 364/1099 (33%), Gaps = 184/1099 (16%) Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP--TNDRLSALVEIYRMMR 371 + + L+ L + +++ + + + R+ A++ + R Sbjct: 246 GRYIYVPLILVLRALVSTTDKEIYST---ICTICASAHPKEDGYVSLRVEAMLRDFHKYR 302 Query: 372 PGEPPT-REAAESLFENLFFSEDRYDLSAVGR--MKFNRSLLREEIEGSGILSKDDIIDV 428 ++ F + DRYDL+ V + F + LL + + + + Sbjct: 303 IFSHKACKQLLGGKFRMILSLLDRYDLTDVDCCDLLFEQYLLINIPKEDTRAKFNMMCLM 362 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG------ 482 +K + + + D D L ++ + G + + L+++ R V + Sbjct: 363 ARKCLLLFGSFIKPDSPDLLSSQEALTPGAFFKAEVTSTLIKIMRLVSRNATSTGAIGSY 422 Query: 483 DLDTLMPQDMINA----KPISAAVKEFFGSS--------------QLSQFMDQNNPLSEI 524 +L I + +P+S+ ++ G LS D+ N + + Sbjct: 423 ELSNSWISHYIASPKLWRPLSSGLRSLAGPGVMRAYKGHDYSNMSGLSVLADRINYVRFL 482 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 H R + G +R ++P YG C + TP+G G++ L A Sbjct: 483 AHFR---CINRGNAFATHKITSIRKLYPESYGFQCAVHTPDGAPCGILTHLCYKATVLSS 539 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNL--DEEGHFVEDLVTCRSKG 640 ++ + + LS Y + + L + LV C Sbjct: 540 TPTTD---QIANLFILLAQFGLSPSLSDIYSLCVVLNGTILGYLDTNERAIQLVACIRAA 596 Query: 641 ES--SLFSRDQVDYMD-------VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV- 690 + +F +V +++ + + + N +++ + Sbjct: 597 KVKSIIFPYTEVVFIEKGNKDHLFPGIYMNTSMGRFYRPVHSLTNNSPEYITPLEQIFLQ 656 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 + D +G + + S ++ + +V + D ++ + E +M GI Sbjct: 657 IAIYGDDVRLGVTTHQEITPTSLLSILGL---LVPFSDHNQSPRNMYECQMLKQTMGIPC 713 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 NL + + + + P +P+ R ++ D G N+ VA + Y Sbjct: 714 RNLAY--KYDTKSYLLTTPQ----KPLVRNAIIHDIGG--FDTHPTGTNLVVAVSAYTSY 765 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT-------------ADIPNV 857 + ED+ L+++ ++ F D KL T + ++ Sbjct: 766 DMEDAALINKASLERGLFHGTVYSVHDIDCYDDKLMRYMRTVATAVPYLKRSPDYIVTHM 825 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS- 916 E ++LDE G+ +GA ++ G + F + K Sbjct: 826 DENYDTELDEDGLPPVGAYLSHGSV-----------------------FYQTYDPTKQCY 862 Query: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 S ++ + G V V V + + + D + F Sbjct: 863 STKLYHHEPGFVEKVIVIHKSAAKGE-------------YWTDNDIATKKKRDSSF---- 905 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 AG + LD D + + N+ Q A + E+K + + Sbjct: 906 ---PAGDSNSSNLDNDASDDEISNQPGSGSESNEDNQTATPRSHA-SKAERKSSRQLQTR 961 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + + + ++ V++ + R GDK+A RHG KG++ DMP+ +G D+ Sbjct: 962 ARTESSSLHFIQRVRIVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTDMPFTSSGIVPDL 1021 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP PSRM +G ++E+ D +++ Q + + + Sbjct: 1022 IINPHAFPSRMTVGMLIESLASKIGVHYADFVDSSPFQWSDERRAIDVFGE--------- 1072 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 +LLK G G +Y Sbjct: 1073 ----------------------------------------QLLKTGQFNRYGSEVMYSAI 1092 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TG+ + +G +Y +L H+V DK R+ G +T+QP+ G+ + GG RFGEME Sbjct: 1093 TGDPMPADIFIGVVYYQRLRHMVSDKYQVRAEGPSDKITKQPIKGRKRGGGLRFGEMERD 1152 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTK--------------MYKNIVDGNHQMEPGMPES 1322 AL A+GA +L+ L +SD + + H +P Sbjct: 1153 ALLAHGAMASLRGRLCTESDATEHVVCAACGSLLGMQLGGSVCRECKATGHGRLIQIPMV 1212 Query: 1323 FNVLLKEIRSLGINIELED 1341 VL ++ ++G+ + Sbjct: 1213 LLVLANDLAAMGVRMRFNV 1231 Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 21/143 (14%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGNSELQYVSYRLGEPVFDVQE 84 +S ++SF FI+ + I S S +++ V+ + P F Sbjct: 54 VSAHVNSFNDFIDSLNTT------IIKHAPAIVINLSTSKAIKVEIVNLTIKPPSFTPAF 107 Query: 85 CQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT--- 141 + Y PL V L++ K + G++P+M + +++G Sbjct: 108 ARETRANYCGPLHVTLKV---------SDGPMSKTVVINAGDVPVMVGSKLCLLHGKTRE 158 Query: 142 ERVIVSQLHRSPGVFFDSDKGKT 164 ER+ + + R G +F S+ Sbjct: 159 ERIRLREDERDAGGYFISNGQDK 181 >UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E7H8_TRIVA Length = 1177 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 210/1140 (18%), Positives = 381/1140 (33%), Gaps = 204/1140 (17%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F + + KV + + + + I +K VK ++ E + V L+ Sbjct: 186 GYFIVNGSEKVIIGQEHMVINKPICYAQKSMVK-YDLATEIRSQPKVFGRLSQPFNLFLL 244 Query: 311 CAANMELSLDLLAKLSQS--GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + + AKLS++ I + + DP + E Sbjct: 245 APTAKQPERPIHAKLSKTEKTIPLFILFRALKFKGDKEILDLICYDPEDS------EFID 298 Query: 369 MMRPGEPPTREAAESLFENLFF-------SEDRYDLSAVGRMKFNRSLLRE--EIEGSGI 419 ++RP + + F +E++ + N LL E E Sbjct: 299 VLRPSIEESSSFLDDRACLDFVGKRCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDTT 358 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER----AV 475 I + LI++ G+ + DD DH N+R+ G + F + ++ + + Sbjct: 359 SKAFFIGYMAHNLINVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFALLFEKMIKSLTQHL 418 Query: 476 KERLSLGDLDT-------LMPQDMINAKPISAAVKEFFGSSQLS------------QFMD 516 ++RL G++D L Q ++N K I++ ++ G+ S Q ++ Sbjct: 419 EKRLKDGNIDQMAKSAADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQAGSKAGVSQMLN 478 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + LS +++ RR + + R+ R +H TH+G +CP+ETPEG + GLI +L+ Sbjct: 479 RLTFLSTLSNLRRTNT----PIGRDGKLTGPRHLHNTHWGYICPVETPEGQSCGLIKNLA 534 Query: 577 VYAQTNEYGFLET--PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV 634 + + LE ++ + T I ++ + + N DL+ Sbjct: 535 LMSIVTVNRELEAGDAITRILEDTGTIPIQQITPDQIKDSTKIFLNGAWYGIHTDAYDLM 594 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 SL V F+ H + + R P L Sbjct: 595 ETLLSERRSLKIPSDVS------------------FVHHIRDQEIFIWTDGGRITRPVLI 636 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 + T + + ++ V + G+V+Y+D K+ + +L Sbjct: 637 V-NDMHLTLKKSVLYDENTNWKVLRYKGMVEYLDIDEEETKL---------IALSPADLE 686 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 + S V+ PS G + +P+ +N Sbjct: 687 ENRNSPTG--------------VKTYTHCEIHPSLIFG-------VCGTIIPFPDHNQ-- 723 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 S + + + ++ + P V + L+ + + G Sbjct: 724 SPRNTYQCAMGKQAIGLYTTNYMIRMDSSSHVLWYPQK--PLVATRNMRYLNFNKLPA-G 780 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 VT V T E+ L+ + S Sbjct: 781 INVT--------VAICCYTGYNQEDSLMLNASAIDRGLFR--SYFFRTYKE--------- 821 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 T +G + + + K + ++A + AV+ A V K+ Sbjct: 822 TAEGDGTEGASEVFTFPDPQTVKGIKLHDSSKIDADGLAIPGAVVSAQDVIIGKISPDSP 881 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + +Q + + E ++ R IT+ + L++ +V Sbjct: 882 TEL-------DHRQYKDTSCVVRPMETG-----VVDLVLRTITKKN------LQLARVRT 923 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 RR + GDK RHG KGV EDMP+ +G DI++NP +PSRM IG ++E Sbjct: 924 RQMRRPEIGDKFCSRHGQKGVCGMTYRQEDMPFTRDGMVPDIIMNPHALPSRMTIGHLIE 983 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 LG A Sbjct: 984 CLLGK---------------------------------------------------CTAI 992 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 + + F G I + L+ G LY+GR+G++ + + G Y + Sbjct: 993 DPQNADEGDATPFCGVTVDAIAKRLQDAGFEKYGNETLYNGRSGKRLKAKIYFGPTYYQR 1052 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+V DK HAR+ G SL+ +QP+ G+A+ GG RFGEME L A+G + +++ L Sbjct: 1053 LKHMVGDKAHARALGRKSLILRQPVDGRARNGGLRFGEMERDCLIAHGVSAMMRDRLLEN 1112 Query: 1295 SD----DVNGRTKM-----------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 SD V + D + MP +F ++++E+ S+ I L Sbjct: 1113 SDRYFVPVCKTCGLIAIEKTDGTMECPACQDEGRLAKVEMPYAFKLVIQELMSMCIAPRL 1172 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 156/1083 (14%), Positives = 328/1083 (30%), Gaps = 225/1083 (20%) Query: 18 RPQVLDVPYLLSIQLDSFQKF----------------IEQDPEGQYGLEAAFRSVFPIQS 61 + + L+ QL S+ F ++ D ++ F S + Sbjct: 25 ISKFFENRGLVKQQLKSYNSFINNCVDSVLDDKGHITLQSDQLLANKIKMDFNSNDDDED 84 Query: 62 YSGNSELQYVSYRLGEPV------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 + + + + P ++R ++YS LR +R+V+ + +K Sbjct: 85 QGKTIHISFGTSTVLRPTTPEGKQLTPMISRLRSLSYSLILRSDIRVVVMDSN---KNMK 141 Query: 116 DIKEQEVYMGEIPLM--------------------------TDNGTFVINGTERVIVSQL 149 + V + ++P+M G F++NG+E+VI+ Q Sbjct: 142 QLDVDGVEIAKVPVMIRSEYCHLSNHRDDRAINDNLNECDYDPGGYFIVNGSEKVIIGQE 201 Query: 150 HR---SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF------DPKDNLFVRIDR 200 H P + K + ++ ++ + P+ + ++ + Sbjct: 202 HMVINKPICYAQKSMVKYDLATEIRSQPKVFGRLSQPFNLFLLAPTAKQPERPIHAKLSK 261 Query: 201 RRK-LPATIILRALNYT-TEQILDLF-FEKVIFEIRD---------NKLQMELVPERLRG 248 K +P I+ RAL + ++ILDL ++ E D + + G Sbjct: 262 TEKTIPLFILFRALKFKGDKEILDLICYDPEDSEFIDVLRPSIEESSSFLDDRACLDFVG 321 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK------LIEVPVEYIAGKVVAKDYI 302 + S E + + R + + L + + I + V+ + Sbjct: 322 KRCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDTTSKAFFIGYMAHNLINVVLGRR-- 379 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 D+ + ++L+ L+ +L +++ T L+ + L+ + + Sbjct: 380 DQDDRDHYSNKRLDLAGPLIGQLFALLFEKMIKSLTQHLE------KRLKDGNIDQMAKS 433 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL-----LREEIEGS 417 ++ R E +S R S G + L L + Sbjct: 434 AADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQAGSKAGVSQMLNRLTFLSTLSNLRRTN 493 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV-GE---MAENQFRVGLVRVER 473 + +D + + L + G + + G+ + +N + +V V R Sbjct: 494 TPIGRDGKLTGPRHLHNTHWGYICP----------VETPEGQSCGLIKNLALMSIVTVNR 543 Query: 474 AVKERLSLGDLDTLM---PQDMINAKPISAAVKEFFGSSQLSQFM-DQNNPLSEITHKRR 529 ++ ++ + P I I + F + D + + + +RR Sbjct: 544 ELEAGDAITRILEDTGTIPIQQITPDQI-KDSTKIFLNGAWYGIHTDAYDLMETLLSERR 602 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHY---GRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 S P ++ +RD + GR+ + ++N + + + + Sbjct: 603 -SLKIPSDVSFVH---HIRDQEIFIWTDGGRI-------TRPVLIVNDMHLTLKKSVLYD 651 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 T KV + YL EE +IA + ++L+E + + + Sbjct: 652 ENTN-WKVL--RYKGMVEYLDIDEEETKLIALSPADLEEN-----------RNSPTGVKT 697 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 ++ + V ++IPF +H+ + R M +QA+ T Sbjct: 698 YTHC---EIHPSLIFGVCGTIIPFPDHNQSPRNTYQCAMGKQAIGL--------YTTNYM 746 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 S Sbjct: 747 IRMDSSSHVLW-----------------------------------------------YP 759 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P V+ + + +L G N+ VA + GYN EDS++++ + Sbjct: 760 QKPLVATR----------NMRYLNFNKLPAGINVTVAICCYTGYNQEDSLMLNASAIDRG 809 Query: 827 RFTTIHIQELA--CVSRDTKLGPEEITADIPNVGEAAL----SKLDESGIVYIGAEVTGG 880 F + + T+ E T P + SK+D G+ GA V+ Sbjct: 810 LFRSYFFRTYKETAEGDGTEGASEVFTFPDPQTVKGIKLHDSSKIDADGLAIPGAVVSAQ 869 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 D+++GK++P T+L KD+S V +G V V Sbjct: 870 DVIIGKISPDSPTELD-------------HRQYKDTSCVVRPMETGVVDLVLRTITKKNL 916 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 + R + + + K S Q G+ R + + P + Sbjct: 917 QLARVRTRQMRRPEIGDKFCSRHGQKGVCGMTYRQEDMPFTRDGMVPDIIMNPHALPSRM 976 Query: 1001 GLT 1003 + Sbjct: 977 TIG 979 >UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax=Marseillevirus RepID=D2XA39_9VIRU Length = 1277 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 216/1261 (17%), Positives = 431/1261 (34%), Gaps = 131/1261 (10%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 RV + F SD + + I E+ + + + R Sbjct: 87 RVTHHEFDDRIKDIFPSDARRRGIPYSAPFYCDIFVTTADGETAEYKQQTIAEIPVMVRS 146 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 L Q + +K + I D ++ + G ++ + K Sbjct: 147 CLCNLTRYNLQGDECRQYGEDPMDKGGYFIIDREIVVISSERGAFGRVYTYADKQANKKM 206 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 + R I + V +E + A+ ++ + M S + Sbjct: 207 PKYEVHSEIR-ISATSNTRTTTVYVGLENGVAVLYAQHLSEKGIPLCVVLEAMNFSYLDI 265 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG--EPPTREA 380 K ++ K L+H + + R + + + ALV + G E P +A Sbjct: 266 LKFTKGLTKEQRGFLIPSLEHARAMFPSSRKNRVSSMVKALVAMGYKKPKGVEELPPSDA 325 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 L + + ++ + + ++ G Sbjct: 326 EVKLAVWAATLSKELCEKLFPCYREADK------------KVWFMCYMLARALKVKTGDR 373 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA 500 + +D DH N+R+ V + N F + + +K+ G T P I +K I+ Sbjct: 374 QPEDRDHYTNKRVDCVDSLLNNLFYSMWNQTTKFIKDS-CKGKERTADPLKPIRSKSITK 432 Query: 501 AVKEFFGSSQLS------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 ++ + S Q ++ N ++ ++ R++ A + E + R Sbjct: 433 KIRTAMSTGNWSSFNTKSKKQGTSQNYERYNIVASCSNLRKVHA----AIGTEGNMTKPR 488 Query: 549 DVHPTHYGRVCPIETPEGP-NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 VH + YG +CP +TPE GL L++ A + +E + + + Y S Sbjct: 489 RVHESSYGFICPPDTPESKDKTGLSKVLALSATMSLGCTVEECFE------ILSALEYFS 542 Query: 608 AIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 G N + D + +L + G+ + V + +V Sbjct: 543 QDF-GLETFVFLNGVIMGSTDSPKELIGELSVLKRAGDF-FWDCCFVFDEKHNEVRVNCD 600 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA----VDSGVTAVAK 719 LI L + + G + + + +G G+ + S + A+ Sbjct: 601 AGRLIRPLMVVEGGKLRFGPEHYERLMKGTITWQEFIGLGIVEILDAEQQEHSLICPSAE 660 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP--- 776 + G + + + I + I + S + + M S+ P Sbjct: 661 QLGQSESKEWTHCEIHP----LLVYGVCASIIPYSANNPSPRLSYFASMAKSSVAVPRLD 716 Query: 777 -----------VERGDVLADGPSTD---LGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 L ++ + + + QN+ VA ++G+ ED+I+ + Sbjct: 717 FGIAPFDQHVLHYPQKPLTSTKASRLLGMNKSPICQNLVVAVCSYDGFGQEDAIVACKAF 776 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 Q + H+Q + K + ++ G +V Sbjct: 777 TQRGGMVSDHVQNYVAIIDHEKEQISPSRCSDVEFSSSCQRFWCKN----CGKKV----- 827 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF-TRDGVEK 941 K+ P+ ++ P + I K D + + VF R+ + + Sbjct: 828 ---KLCPECGSEYVPSFSGHKGIVCRKKEDER----------RAFIDRQTVFWNRNPINR 874 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 KR + ++ +K++ + + L + L E +LD L + +E+G Sbjct: 875 IKRKVVVDGE-----EKEVDNQKKFLGK----KKWDCLCEEVEELPRLDHLDPEGVVEVG 925 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL-APGVLKIVKVYLAVKRRI 1060 E+ + + K E + KR ++T P ++V +A R Sbjct: 926 EVVEDGDILIAVAGVSGAKRKDESIYFGKDKRGRVTSVSYFQNPNGYLCIRVAVASTRIP 985 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENG---TPVDIVLNPLGVPSRMNIGQILETHL 1117 + GDK H KGV S +DMP+ + T D ++NPL PSRM IGQ E++ Sbjct: 986 ETGDKATSFHSQKGVFSLFVEEQDMPFTSDAFSATHPDFLINPLAFPSRMTIGQPKESNT 1045 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 G + A ++ + E+ L A ++++V + + +E+ + + Sbjct: 1046 GK--------MTASAYRELPDSHRFEYENLYRTLSARIQKEVPEAEEAAKELEKRNPKTK 1097 Query: 1178 --KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 G F +++ LK G+ DGRTG++ E + VG + +L Sbjct: 1098 GYSGSYTDCTPFTS-NYQVVEDELKRRGYAPGGKEFFIDGRTGKKMEVSLFVGLVPYNRL 1156 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DK+HAR+TG +T+QP G+++ GG + G ME +L GA + L++ L + Sbjct: 1157 KHMVIDKIHARATGKIQSLTRQPTEGRSRNGGLKTGIMERDSLVGNGAVFCLRDRLFLSC 1216 Query: 1296 DD----VNGRT----------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 D V K + ++ ++ +P + + +E+ ++GI + Sbjct: 1217 DKFEVWVCESCGLIAVESKEKKYCRACHGKSNVVKLAVPYATKLSFQELMAMGITPRILV 1276 Query: 1342 E 1342 + Sbjct: 1277 K 1277 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 55/430 (12%), Positives = 121/430 (28%), Gaps = 88/430 (20%) Query: 29 SIQLDSFQKFIEQ---DPEGQYGLEAAFRSVF-----------PIQSYSGNS--ELQYVS 72 Q+ ++ +F+++ + + G + P + +++ + Sbjct: 23 HHQIQAYNEFVQELLPNIIREKGRVEIDKEEETVEDDEEETVTPAAKKKRSWFQVVEFTN 82 Query: 73 YRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 G + + RG+ YSAP + + + G + K+Q Sbjct: 83 PVFGRVTHHEFDDRIKDIFPSDARRRGIPYSAPFYCDIFVTTAD-----GETAEYKQQT- 136 Query: 123 YMGEIPLMTDNG--------------------------TFVINGTERVIVSQLHRSPGVF 156 + EIP+M + F+I+ E V++S + G Sbjct: 137 -IAEIPVMVRSCLCNLTRYNLQGDECRQYGEDPMDKGGYFIID-REIVVISSERGAFGRV 194 Query: 157 F---DSDKGKTHSSGKVLYNARIIPYRGSWLDFEF----DPKDNLFVRIDRRRKLPATII 209 + D K +V RI + + + L+ + + +P ++ Sbjct: 195 YTYADKQANKKMPKYEVHSEIRISATSNTRTTTVYVGLENGVAVLYAQHLSEKGIPLCVV 254 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY------- 262 L A+N++ IL F K Q + L A F +V Sbjct: 255 LEAMNFSYLDILK-------FTKGLTKEQRGFLIPSLEHARAMFPSSRKNRVSSMVKALV 307 Query: 263 ---VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 +K + + E + + K+ + +C L+ Sbjct: 308 AMGYKKPKGVEELPPSDAEVKLAVWAATLSKELCEKLFPCYREADKKVWFMCYM---LAR 364 Query: 320 DLLAKLSQSGHKRIETLFTNDLDHGPYISETL-RVDPTNDRLSALVEIYRMMRPGEPPTR 378 L K + + +D + L R +P Sbjct: 365 ALKVKTGDRQPEDRDHYTNKRVDCVDSLLNNLFYSMWNQTTKFIKDSCKGKERTADPLKP 424 Query: 379 EAAESLFENL 388 ++S+ + + Sbjct: 425 IRSKSITKKI 434 >UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae AF16 RepID=A8WJV6_CAEBR Length = 1160 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 214/1221 (17%), Positives = 392/1221 (32%), Gaps = 248/1221 (20%) Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI-------------E 256 LR + Y+ +D+ + + + L + +P LR Sbjct: 92 LRDMTYSAPISVDIEYTRGHQRVYKKDLVIGRMPIMLRSSKCILRDLAEEELARVQECPH 151 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 G +V KG QL K+ + + + + +V++ +S + Sbjct: 152 DPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYVTVKKGKY 211 Query: 317 LSL-----------DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV---DPTNDRLSA 362 + + I + ++ + ++TL + A Sbjct: 212 SVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEECINAGVYTQQQA 271 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L + ++ + + ++ + + AV + + +G+ + Sbjct: 272 LAYVTSKVKARKFTPFGSLPGTSVSVLTAPK--EHEAVDFLSNSMITHIACPDGNFKMKA 329 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + + ++LI G+ E+DD D GN+R+ G + F R +K Sbjct: 330 IYLGQMTRRLIQTEMGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNA 389 Query: 483 ---------DLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISA 532 D+ M QDMI ++A G+ + +F M++ ++ ISA Sbjct: 390 LMKTMAAPLDIVKHMRQDMITNTIVNAMST---GNWIIKRFRMERLGVTQVLSRLSYISA 446 Query: 533 LGPGGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 L G +TR + FE R + P+ +G +CP +TPEG GL+ +L++ + Sbjct: 447 L--GMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITT-D 503 Query: 586 FLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLD----EEGHFVEDLVTCRSK 639 E P ++ +++H + S + + + N L + V+ + R Sbjct: 504 SDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRS 563 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 G S F + S G P++ L ++Q R + Sbjct: 564 GLLSEFVSVSRSMTNRSVFISSDGGRLCRPYIIVRHGKPMLTETHVQELK-EGKRIFEDF 622 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 V G+ + V+ A+ V + I + E+ P L Y Sbjct: 623 VDDGIVEYLDVNEMNDAL-------IAVYENEIGAETTHLEIEPFTLLGVCAGLIPYPHH 675 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE---DSI 816 NQ P + +G+ A+G YN + DSI Sbjct: 676 ------NQSPR--------------NTYQCAMGKQAMGTIA---------YNQQKRIDSI 706 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL--DESGIVYIG 874 + Q + I+ KL +GI+ + Sbjct: 707 MYLLCYPQRPLVKSKTIEL------------------------TNFEKLPAGANGIIAVM 742 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE--KASDVKDSSLRVPNGVSGTVIDVQ 932 + +G DI E L + L +G VK ++ + PN ++ Sbjct: 743 SY-SGYDI---------EDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTYDRLLGPA 792 Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 V + K ++ I+ G + ++ + + Sbjct: 793 VDSVTLKPIFKHKN--------------LDQEGIVFTGARILPKQTIINKYMPVVSAESG 838 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 +G+ + + + ++ A+R +T +D A + KV Sbjct: 839 SAASANTIGIAGRDVAYKDVSIT-------YKTPTPSYAERVLLTYNEDEA----HLFKV 887 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 L RR + GDK + RHG KGV I EDMP+++ G D I Sbjct: 888 LLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPD---------------MI 932 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 + H G ++ K+ E++ Sbjct: 933 MNPH-GYPSRMTVGKLM--------------------------------------ELLSG 953 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 + G F G + ++ E L G+ L G TG+ + G +Y Sbjct: 954 KAGVMNGTYHYGTAFGGDQVKDVCEELAARGYNYMGKDMLTSGITGQPLSAYIYFGPIYY 1013 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 KL H+V DKMHAR+ G + +T+QP G+++ GG R GEME L AYGA+ L E L Sbjct: 1014 QKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLM 1073 Query: 1293 VKSDD---------------------------------VNGRTKMYKNIVDGNHQMEPGM 1319 V SD+ V G + + Sbjct: 1074 VSSDEFKVLFRSFVPLIPIEVFFVRRCFQCVDVCTGCGVIGSKGWCQKCRSSKSMANIKI 1133 Query: 1320 PESFNVLLKEIRSLGINIELE 1340 P + +L +E++S+ I L+ Sbjct: 1134 PYACKLLFQELQSMNIVPRLD 1154 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 138/1029 (13%), Positives = 304/1029 (29%), Gaps = 156/1029 (15%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYRLG 76 P L V L+ L SF F+ + S I + N L Y+ R+G Sbjct: 32 VPAFLKVRGLVKQHLVSFDHFV------NVEIRNIMLSNQKITSDANPNFHLTYLDIRVG 85 Query: 77 EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT----- 131 +P +C++R +TYSAP+ V + + + ++++ +G +P+M Sbjct: 86 KPS----KCRLRDMTYSAPISVDIEYT--------RGHQRVYKKDLVIGRMPIMLRSSKC 133 Query: 132 -------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 G FV+ G+E+VI+ Q S +VL Sbjct: 134 ILRDLAEEELARVQECPHDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQCEVLS 193 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 + R S +P +II +A+ ++ + + Sbjct: 194 ST---SERKSKTYVTVKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYV 250 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 +E KV K + + V+++ Sbjct: 251 SAFAQTLEECINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTAPKEHEAVDFL 310 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLA-KLSQSGHKRIETLFTNDLDHGPYISETL 351 + ++ + ++ +++ L+ ++ ++ + L+ + L Sbjct: 311 SNSMITHIACPDGNFKMKAIYLGQMTRRLIQTEMGENELDDRDFYGNKRLELAGSLLALL 370 Query: 352 RVDPTNDRLSALVEI-YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 D S L I + + + + +++ + + + Sbjct: 371 FEDVFKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITN--TIVNAMSTGNWIIKRFR 428 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 E + + +LS+ I + + I + + R++ + +Q+ + Sbjct: 429 MERLGVTQVLSRLSYISALGMMTRINSTFEKT--------RKVSGPRSLQPSQWGML--- 477 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL-----SQFMDQNNPLSEIT 525 E + G + L I V +S + F N P + + Sbjct: 478 CPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLI 537 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA--QTNE 583 + L + ER VRD+ + G + + + S++ + +++ Sbjct: 538 FLNGV--LIGTAVDPERVVKAVRDLRRS--GLL-------SEFVSVSRSMTNRSVFISSD 586 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV---IAQANSNLDEEGHFVEDLVTCRSKG 640 G L PY V G ++ ++EG + + + + D + + Sbjct: 587 GGRLCRPYIIVRHGKPMLTETHVQELKEGKRIFEDFVDDGIVEYLDVNEMNDALIAVYEN 646 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 E + ++++ ++ V A LIP+ H+ + R M +QA+ Sbjct: 647 EIGAET----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAM---------- 692 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 G + Y RI + Sbjct: 693 ---------------------GTIAYNQQKRIDSIMY----------------------- 708 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 C Q P V T+ +L G N +A M ++GY+ ED++++++ Sbjct: 709 -LLCYPQRPLVKSKTI----------ELTNFEKLPAGANGIIAVMSYSGYDIEDALVLNK 757 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEI-----TADIPNVGEAALSKLDESGIVYIGA 875 + + + + ++ + + LD+ GIV+ GA Sbjct: 758 ASLDRGYGRCLVYKHVKGTAKKYPNQTYDRLLGPAVDSVTLKPIFKHKNLDQEGIVFTGA 817 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 + ++ K P + + KD S+ V + Sbjct: 818 RILPKQTIINKYMPVVSAESGSAASANTIGIAGRDVAYKDVSITYKTPTPSYAERVLLTY 877 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + + L + + + K S Q GL ++ + + P Sbjct: 878 NEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHG 937 Query: 996 RWLELGLTD 1004 + + Sbjct: 938 YPSRMTVGK 946 >UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Tax=cellular organisms RepID=RPOB_PSEAK Length = 2178 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 223/721 (30%), Positives = 354/721 (49%), Gaps = 77/721 (10%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGE 77 +P L+IQ SF++F++ GL F++ I + + E+ + Y+L Sbjct: 61 SQFKIPDFLNIQRSSFRQFLKS------GLITEFKNCKSITNSNQTFEVFFYAEHYKLNR 114 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P + ++ ++ +YS+ L + ++L Y+ E ++ Q V + +PLMT NG F+ Sbjct: 115 PKWTPKQAILKKKSYSSQLYLPIQLSNYQTE-------EVHLQWVLLANLPLMTKNGHFI 167 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD-PKDNLFV 196 +NG RV+++Q+ RSPGV+F K + K +Y+A I RGSWL E D K +++ Sbjct: 168 LNGCPRVLMNQIVRSPGVYFR----KVVKNQKTVYSADFIAQRGSWLRLEVDTKKGDIWA 223 Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 ++ + K+P LRAL T + Sbjct: 224 KLKKTPKIPIFTFLRALGLTLPIL------------------------------------ 247 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 N + K R + +K P + I Sbjct: 248 -NNSIDFAKLRYLLQFKEESKRSKKIKDFLGPGI--------------NNSLDIVEFRSL 292 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 L L K + + + +++ + L ++Y + E Sbjct: 293 LKS--LKKYMKPKPAKKSSKKQKTKKIKKWLTPFVCTTYFQSLLELCQKLYPQKKFLE-L 349 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 + A+ F + YDLS +GR K N+ L IL+ D++ L+D+ Sbjct: 350 DPKLAQKFLFRKFQNPRTYDLSILGREKINKKLGISIPLEKTILTSQDVLFACLFLMDLL 409 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 G DDID L NR+I+ GE+ + Q GL+R+E+ ++E+L D+ ++ + K Sbjct: 410 QGLVISDDIDDLKNRKIKPSGELIQTQLSTGLIRLEKIIREKLKQPKQDSDSFSNLFSVK 469 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 P++ A ++FFG++ LSQ MDQ N LSEITHKRR+S+LGPGG+ RE AG +R +HPTHYG Sbjct: 470 PLNQAFRDFFGTNPLSQLMDQTNALSEITHKRRLSSLGPGGINRETAGMAIRGIHPTHYG 529 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNY 614 R+CPIETPEG N GL+NS ++++ N F+ETP+ K+ G + + S+ +E N Sbjct: 530 RICPIETPEGQNAGLVNSFTIFSHLNTKSFIETPFYKMYKGFILKNKNPFLFSSDQERNL 589 Query: 615 VIAQANSNLDEEGHFVEDL-VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 V+A + + + R E SR++++++ VS Q++S+ SLIPFLEH Sbjct: 590 VLAPGDIQTSLFHFLPPGVPIPSRQFKEFKRVSRNEINFIAVSPIQMISIATSLIPFLEH 649 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 +D NRALMG+NMQRQAVPT+R KP+VGTG+E V D G ++ G V YVD ++I+ Sbjct: 650 NDGNRALMGSNMQRQAVPTVRPSKPIVGTGLESRVISDVGHGLQVQKSGFVSYVDGNKII 709 Query: 734 I 734 I Sbjct: 710 I 710 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 147/414 (35%), Positives = 217/414 (52%), Gaps = 47/414 (11%) Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 + F + L+I+ L++ + + L+ +R + A Sbjct: 1795 RIAKEMYFFNKNEKIKLSTLQIKIKGLEKKEFSFPKILK-------ARFSLLQKAQTANL 1847 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + L W + +++ Q + + + K + + + + Sbjct: 1848 KIEKFLDDKFWNNVNYSNKNFSRNGSQKENSNADGLQFYNPLKKTKTKVLQPMEKTSFSG 1907 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 + V +YLA KR++Q GDK+AGRHGNKG+IS I P +DMPY +GTP+DIVLNPLGVPSR Sbjct: 1908 PQKVHIYLAEKRKLQIGDKIAGRHGNKGIISNILPRQDMPYLSDGTPLDIVLNPLGVPSR 1967 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQILE LGMA + + G + + + S + Sbjct: 1968 MNVGQILECLLGMAGYYLKQNFKIQPFDE--------------IYGCEASRSLVYSKLYE 2013 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 + + L + G+ RL+DGRTG+ F++PVT Sbjct: 2014 ARIKTGQD-------------------------WLFNANHPGKTRLFDGRTGDCFKQPVT 2048 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWALE +GAAY Sbjct: 2049 VGVAYILKLIHLVDDKIHARSTGPYSLVTQQPLRGRSKQGGQRVGEMEVWALEGFGAAYI 2108 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LQE+LT+KSDD+ GR ++ +I++ N + G+PESF VL++E++SL ++I + Sbjct: 2109 LQEILTIKSDDLKGRNQVMNSILN-NKPVNFGLPESFKVLVRELQSLCLDIAIY 2161 Score = 212 bits (540), Expect = 7e-53, Method: Composition-based stats. Identities = 94/312 (30%), Positives = 162/312 (51%), Gaps = 6/312 (1%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y L Y RSNQ+T + P V G+ VE+GD+LAD + GEL++GQN+ V ++PW GY Sbjct: 1515 YILNNYHRSNQDTYMIHRPLVQEGQWVEKGDILADSSVSVQGELSIGQNILVGYIPWEGY 1574 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 NFED++L+SER++ +D +T++HI+ RDT+ G E+IT IPN + +D +GI Sbjct: 1575 NFEDAVLISERLIFDDLYTSLHIERYEVEIRDTQFGLEQITNQIPN-EKGEYDYIDSNGI 1633 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG V GDILVGK+ P G+ +LT E LL I ++ +D+SLRVP GV+G VI Sbjct: 1634 AKIGTWVKEGDILVGKIAPIGQKKLTAYENLLYDILNKEIPKTRDTSLRVPRGVTGRVIH 1693 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKK----DLSEELQILEAGLFSRIRAVLVAGGVEA 986 V++ + + ++ + ++ + +K E + ++++ E Sbjct: 1694 VEIVETTKKKGNDSSIFAKSLKFPKKQKLKRVTSPEYWYPVNTKKDQKVQSFSFKNKSEK 1753 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 L + E + + + L ++ + + K++ + + + + Sbjct: 1754 LFLTPVQSYFNKEAKTKNPKLNSPFFYLNKRNPDFNLKRNKRIAKEMYFFNKNEKIKLST 1813 Query: 1047 LKIVKVYLAVKR 1058 L+ +K+ K+ Sbjct: 1814 LQ-IKIKGLEKK 1824 >UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta RepID=A9TK27_PHYPA Length = 1238 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 215/1404 (15%), Positives = 440/1404 (31%), Gaps = 304/1404 (21%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS-- 63 +E++ R K + L+ L SF +F+E + S I +S Sbjct: 70 SEEEVARSAVAKI--IFKGRSLVEHHLRSFNEFMEYGLPAMF---EEAGSFDCIPDHSVL 124 Query: 64 --------GNSELQYVSYRLGEPVFD-------------VQECQIRGVTYSAPLRVKLRL 102 + + Y +G+P E ++R ++YSA L V + L Sbjct: 125 VDSGIGVRKWARIVYGEVAVGKPYTTFTREGVKEVVDLLPHEARLRNLSYSAHLYVNMTL 184 Query: 103 VIY----EREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFD 158 + ++ + + K + +G++P+M ++ ++G Sbjct: 185 EVRSQGNKKTQNPEDMIETKTDTICVGKVPVMVNSSFCHLHG------------------ 226 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE 218 + + S D F I K+ L E Sbjct: 227 ------------------LSEKDSVAKGHCSFDDGGFFIIKGSEKV--------LIAQEE 260 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 + + V + R + P + +G+ +R+ Sbjct: 261 KAHQSIY--VSYLKRTDTWIATYSPT----------WRGFNSNQMNRGKTFVKLRMRKKA 308 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 + + + E + ++ + S E + + + + L S + + Sbjct: 309 EL-LVGVPGLTEPVPLVILFRALGTSSDKEFLESICYDSTDSRFHDLLLSSIWDADLILE 367 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP-PTREAAESLFENLFFSEDRYDL 397 Y + + D++ ++ + +R P+ EA +++ LF Sbjct: 368 EFQSRISYPAGASAIKSVRDQILSVRFLGTKLRNSRHVPSVEAGKTIIGQLFVH------ 421 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 EG + ++ +L G+ DD DH N+R+ G Sbjct: 422 ----------------TEGGYTRKAMLLGYMVNQLCSTFLGRRLEDDKDHFKNKRLDLTG 465 Query: 458 EMAENQFRVGLVRVERAVKERLS---LGDLDTLMPQDMINAKPISAAVKEFFGSSQL--- 511 ++ +QFR + +ER VK RL + D + + ++ ++ F Sbjct: 466 QLLSHQFRKAMAHLERDVKRRLHPYLVKGRDLAPLKTYVTEAIVTKQMQSAFTLGNWNTN 525 Query: 512 --------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 + + NP++ ++H R+ P + + R + +++GR+CP +T Sbjct: 526 EGLKSSGVVAVLKRMNPMATLSHLRQFRLNLPPPM---KPTDPARHPNYSYWGRICPTQT 582 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 +G GLI SL++ + E P V + ++ + Sbjct: 583 SDGAECGLIKSLALTCVVS-SDTPEEPVLHVLSDCGMHSLEEITPLTISMAEKIFV---- 637 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 G +V + + + +Q++ I + Sbjct: 638 --NGRWVGIF------YDYNATLAIVATLRQLRREQLLH---GEIEVARDPKTKAVHIHT 686 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 + R P L E+ +A+ + + +A + + + Sbjct: 687 DAGRLLRPLLIVK--------EQKLAMSKQHLKTLRAMSKQESAEACW-NFLLEQQVVEL 737 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE----LALGQN 799 + L R + +ER D P E G Sbjct: 738 LGTEEEEGALIALNRDD----------------LERARKDPDAPLYTHSEIDVSYIFGLG 781 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + +P+ +N + + + K T+++ + Sbjct: 782 A--SVIPFLDHNQ----------ASRNLYQA---------EKHCKQAMGFYTSNLSGRSD 820 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE-EKLLRAIFGEKA--SDVKDS 916 + +L LV T + PE AI + + +DS Sbjct: 821 CSGHQL-----------FYPQKPLV--TTRTWDYLKKPEITNGQVAIVSIQCCGYNQEDS 867 Query: 917 SLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 + + G + T G E+ + + AK+ + L ++ F + Sbjct: 868 IIMNRASIDRGLFRSMHFKTYRGEERHNVIEHFAKPSISIAKRSRNASLNKIDEDGFPHL 927 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 L G + K L + + + + ++L + + Sbjct: 928 GDYLEKGDIIIGK---------LTAEMGNPKLADSSQRLR---------AHENGRVDQVL 969 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 ++ +D +I KV L RR Q GDK + HG KGVI + ED+P+ G D Sbjct: 970 LSSEED----GHRIAKVRLRCSRRPQAGDKFSSMHGQKGVIGAVLNQEDLPFTRQGVVPD 1025 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I++NP +P+R + G + ++L + V ++ + Sbjct: 1026 IIINPHALPNRQTV---------------GQLLESLLGKLMAVRGTQQSV---------- 1060 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 P + + + L + G + +G Sbjct: 1061 ----------------------------APFQKQSATRKFMDQLHQSEYQRGGSESMTNG 1092 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHAR-STGSYSLVTQQPLGGKAQFGGQRFGEME 1274 TG + +++G + +L+H+V+DK+ R S G +T+QP+ + GG +FGEME Sbjct: 1093 TTGMRLNSLISIGATFYQRLDHMVEDKIKYRGSGGPVDALTRQPVKNRKNMGGVKFGEME 1152 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNG----------------RTKMYKNIVDGNHQMEPG 1318 + +GA+ TL+E + SD R + K G H ++ Sbjct: 1153 RDCMIGHGASVTLRERCFLLSDPYAMLVCSSCRRPSGHTDPSRRRFCKFCCTGKHVVQIQ 1212 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +P S +L +E+ S+GI + LE + Sbjct: 1213 IPYSCKLLWQELLSMGITLFLETK 1236 >UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax=Euglena RepID=RPOB_EUGGR Length = 1082 Score = 465 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 244/903 (27%), Positives = 413/903 (45%), Gaps = 73/903 (8%) Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 +NG RV + L F K + L + I + G + F+ D Sbjct: 2 VNGC-RVRSNLLDIQRNSFRSFLKKGLV---EELRKIKDIAHEGFRISFQTDNVKY---- 53 Query: 198 IDRRRKLPATIILRA---LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 ++ K+ A L+ + + +++ + + + L E +F Sbjct: 54 --KKPKISAEFALKNGETYSLSVHIPVEVTYNNMFLVRNK---YILFAKIPLMTEKGTFI 108 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 N ++ V + R + + +D + I + + + + Sbjct: 109 FNGNKRIMVNQIIRSPGVYFEKNRYND----SIFATLIPTFGSWLTFKIDQDEGIFVKVD 164 Query: 315 MELS-LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + + L+ L G R + + P ETL+ + E Y++ P Sbjct: 165 KIKTAIPLINFLKCLGLSRKKFFLYL---NDPIFIETLQESESYGIRLEFFEFYKIFFPN 221 Query: 374 EP-PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI-EGSGILSKDDIIDVMKK 431 E A + F +YDL VGR + N + R E + + L +D++ + Sbjct: 222 EVNVRFGNARKFLRSKFMDPRKYDLGEVGRFRVNTKIYRSEFFQSNRTLQPEDVLGIAHY 281 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL----SLGDLDTL 487 LI+++ G D+ID L N+ +RS+GE+ ++QFR+ L +E ++KE+L T Sbjct: 282 LIELKKGMIPFDEIDDLKNKLVRSIGELLQSQFRIILNELESSLKEKLIFLYKNPSEKTF 341 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 N+ I+ +++FF + LSQ +D N LSE+THKR++S GP GL +ER +V Sbjct: 342 RLSRFFNSYFITNRIRKFFSVNPLSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDV 401 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHY 605 R+++ + YGRVCPIET EG N GLI SL+ + ++YGFLE+P+ KV G + I++ Sbjct: 402 REINTSQYGRVCPIETSEGKNAGLILSLAKDVRVDKYGFLESPFYKVLRGKIETNKGIYF 461 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFV--EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 +S+ +E + +A + + + + L+ + S +D++ +ST Q S+ Sbjct: 462 ISSAQEKYFTVAPFDVFRSSQSNLLDKNKLLGVKRSKIFSYSFSKNIDFISISTDQFTSL 521 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 G L+PFLEH+DANR LMG+NMQRQ++ L + P + TG E + +S T +AK G Sbjct: 522 GTGLVPFLEHNDANRVLMGSNMQRQSLILLEKEVPFIKTGREALINRESDATVLAKSSGK 581 Query: 724 VQYVDASRIVIKVNE---------------------------DEMYPGEAGIDIYNLTKY 756 V Y +IVI+ E + + IY L Sbjct: 582 VIYSSLKKIVIQEEEYCANIEFFNKNYSFFNLLGCLNEISQKNFKLIKKVNQKIYFLESP 641 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 +SN I ++P V GE V +G ++ADG ST G + LG+N+ VA++ W GYNFED++ Sbjct: 642 KKSNHGVYIQKIPIVHEGEWVRKGQIIADGMSTLRGGICLGKNVLVAYLGWEGYNFEDAV 701 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 ++SER+V ED FT+IH+++ + + E I+ IPN + L +GI+ IG+E Sbjct: 702 IISERLVFEDIFTSIHMKKFKTFIVNDEKKGENISMFIPNASLKTIKNLKNNGIIKIGSE 761 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 + D+L+G++ K + TP+ K+L A FG K KD SLR P + G V V++ + Sbjct: 762 IKAQDVLIGRIKVK--LKNTPKNKMLIAFFGNKVR--KDVSLRSPRSLVGIVTSVEILCK 817 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 + + + ++ + G I ++ + + D P D Sbjct: 818 KSNCS-------VLIHVAEKRRIQIGDKIAGRHGNKGIISKIVPSIDMPF-LPDGTPVDM 869 Query: 997 WLE 999 L Sbjct: 870 ILN 872 Score = 312 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 148/481 (30%), Positives = 240/481 (49%), Gaps = 67/481 (13%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 IV+ G V G I+ ++ + +L A G + + +D+ + +S ++ Sbjct: 655 IVHEGEWVRKGQIIADGMSTLRGGICLGKN-VLVAYLGWEGYNFEDAVI-----ISERLV 708 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE----LQILEAGLFSRIRAVLVAGGVE 985 +FT ++K K + +E + + + ++ L+ +I + + A V Sbjct: 709 FEDIFTSIHMKKFKTFIVNDEKKGENISMFIPNASLKTIKNLKNNGIIKIGSEIKAQDVL 768 Query: 986 AE----KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 KL P+++ L ++ + + L + ++ K+ + Sbjct: 769 IGRIKVKLKNTPKNKMLIAFFGNKVR--KDVSLRSPRSLVGIVTSVEILCKKSNCS---- 822 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 V +++A KRRIQ GDK+AGRHGNKG+ISKI P DMP+ +GTPVD++LNPL Sbjct: 823 --------VLIHVAEKRRIQIGDKIAGRHGNKGIISKIVPSIDMPFLPDGTPVDMILNPL 874 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 G+PSRMN+GQ+ E+ L +++ + ++ + + + + A R K D Sbjct: 875 GIPSRMNVGQVFESLLNLSSLFLKERYKIQPFDEVQTSMNSKSFVYKKLNEARKRTKKD- 933 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 L + G+ LYDGR F Sbjct: 934 --------------------------------------WLFNPNYPGKAFLYDGRNCRPF 955 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + PV GY Y+LKL H+V DK+HAR TG YS VTQQPL GK++ GGQRFGEMEVWA+E + Sbjct: 956 DHPVAFGYAYILKLIHMVKDKIHARVTGPYSSVTQQPLRGKSKNGGQRFGEMEVWAIEGF 1015 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 GAAY LQE+LT+KSDDV R++ ++++G + +P +PE+F + + E++SL I+I++ Sbjct: 1016 GAAYLLQELLTIKSDDVLNRSEALFSLINGTYFSKPNIPEAFKLFILEMQSLCIDIKIFT 1075 Query: 1342 E 1342 Sbjct: 1076 N 1076 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 65/372 (17%), Positives = 132/372 (35%), Gaps = 35/372 (9%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQEC 85 LL IQ +SF+ F+++ GL R + I Q + + +P + Sbjct: 10 NLLDIQRNSFRSFLKK------GLVEELRKIKDIAHEGFRISFQTDNVKYKKPKISAEFA 63 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVI 145 G TYS + + + + + ++ + + +IPLMT+ GTF+ NG +R++ Sbjct: 64 LKNGETYSLSVHIPVEVT-------YNNMFLVRNKYILFAKIPLMTEKGTFIFNGNKRIM 116 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKL 204 V+Q+ RSPGV+F+ ++ A +IP GSWL F+ D + +FV++D+ + + Sbjct: 117 VNQIIRSPGVYFEKNRYNDSI------FATLIPTFGSWLTFKIDQDEGIFVKVDKIKTAI 170 Query: 205 PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV--- 261 P L+ L + ++ + + E + E F E N + Sbjct: 171 PLINFLKCLGLSRKKFFLYLNDPIFIETLQESESYGIRLEFFEFYKIFFPNEVNVRFGNA 230 Query: 262 ------------YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 + G R ++ + + ++ +A I+ G + Sbjct: 231 RKFLRSKFMDPRKYDLGEVGRFRVNTKIYRSEFFQSNRTLQPEDVLGIAHYLIELKKGMI 290 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 +L L+ + + + + L +P+ Sbjct: 291 PFDEIDDLKNKLVRSIGELLQSQFRIILNELESSLKEKLIFLYKNPSEKTFRLSRFFNSY 350 Query: 370 MRPGEPPTREAA 381 + Sbjct: 351 FITNRIRKFFSV 362 >UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogonium cardiacum RepID=B2X1Z1_OEDCA Length = 672 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 220/724 (30%), Positives = 346/724 (47%), Gaps = 86/724 (11%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFDVQ 83 +Q +SF F++ GL + PI+++ N E + Y+L P ++V+ Sbjct: 20 DFTELQRNSFLNFLK------NGLIEELSNRNPIRNHKNNIEFIFYPEYYKLKRPKWNVR 73 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTER 143 E + G +Y A L V +L+ + K I+ + V +G +PLMT G F+ING R Sbjct: 74 ESILLGKSYVAELYVPAQLM-------DKNNKKIQLKWVLIGNLPLMTKRGYFIINGAAR 126 Query: 144 VIVSQLHRSPGVFFDS---------DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 VI++Q+ R PG+++ K + Y A + RG WL D Sbjct: 127 VIMNQIIRGPGIYYSEAIHQYDSFEKKNILMNQSFSRYYADFVSLRGYWLRLSVDKDQFF 186 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + + + K+P L A+ + P+RL + Sbjct: 187 WAEMKKTPKIPLLWFLLAIGLNERLLFRYISN----------------PKRLLHNLHNSL 230 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 ++K +++ + + K N Sbjct: 231 KSKTQLALIKKLQKLQHIQLNVSNNIEKKQ----------------------------KN 262 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 +++ + K + L + L IS+ L L + Sbjct: 263 KTHTIERVQKNDTHTLYQYNFLPDSSLMAWDLISKKLVKKKKMSILKS------------ 310 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 +E F + YD+ +GR+ N+ +L+ D++ L+ Sbjct: 311 ---QEQTRKWLFQRFMNPRSYDIGTIGRLALNKKFNLSISTKKHVLTPYDLLFATDYLMK 367 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 + G +DDIDHL NR++R+ E+ + Q +GL+R+E+ +K+RL+ + + +I Sbjct: 368 VEKGLKNLDDIDHLQNRKLRTASEIIQIQIGIGLIRLEKYIKDRLNQIKVFP-KIESLIT 426 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 K +++A+ EFFG+S LSQFMDQ NPL+EITHKRR+++LGPGG+T++ A +R +HPTH Sbjct: 427 TKSLNSALTEFFGTSPLSQFMDQINPLAEITHKRRLTSLGPGGITKDNATMIIRGIHPTH 486 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEG 612 YGR+CP+ETPEG N GL+NS++ YA+ N G +ETP+ KV G V I +LSA +E Sbjct: 487 YGRICPVETPEGKNAGLVNSITTYAKINSSGLIETPFYKVYKGQVMKNLGIFFLSADDEE 546 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 A+ NL G ++ + R K FSR+QV YM +S Q++S+ SL+PF E Sbjct: 547 QINTVAADINLSAFGFLPKNYIPGRKKDNFIRFSRNQVHYMSISPIQMISIATSLVPFFE 606 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 HDDANRALMGANMQRQAVP +R +P+VGTG+E DSG ++ GG+V YV A +I Sbjct: 607 HDDANRALMGANMQRQAVPLIRPKRPIVGTGVEIRSVADSGHIIESRTGGIVSYVSAKKI 666 Query: 733 VIKV 736 ++ Sbjct: 667 IVHT 670 >UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota RepID=Q5KIB7_CRYNE Length = 1193 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 156/937 (16%), Positives = 310/937 (33%), Gaps = 165/937 (17%) Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKER------LSLGDLDTLMPQDMINAKPISAAVKE 504 +R R+ ++ +F + E ++ + + I I+ +K Sbjct: 375 QRQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMCVEQNKEFALNMAIRPNTITDGLKY 434 Query: 505 FFGSSQL----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR + + R+ + R +H TH Sbjct: 435 ALATGNWGKRDNTRAGVSQVLNRYTFASTLSHLRRTNT----PIGRDSKAAKPRQLHNTH 490 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL--SAIEEG 612 +G VCP ETPEG GL+ +L++ + + G P + + +++ + Sbjct: 491 WGMVCPAETPEGSACGLVKNLALMSYISV-GSYSAPVMEFLEEWGLEDLSEYQDAPTATK 549 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 +V + +L+ R G+ D + L + + Sbjct: 550 VFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIRE----------RELRLYTD 599 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR- 731 R L + Q + R + + + SG G+V+YVDA+ Sbjct: 600 AGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLL--SGAWDKLLSEGIVEYVDAAEE 657 Query: 732 --IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT-CINQMPCVSLGEPVERGDVLADGPS 788 I+I + +++ + L + R+ N + + ++ + PS Sbjct: 658 ETILIAMTPEDLVNARTAHSKHELVR-DRAAHNLESFDPAARIKSTVWSQQYTHMEIHPS 716 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 LG + + +P+ +N S + + + + + R + Sbjct: 717 MILG-------VCASIVPFPDHNQ--SPRNTYQSAMGKQAMGVCLTNY--QLRMDTMVNV 765 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 P ++ L ++L + + AI Sbjct: 766 LYYPQKPLATTRSMEYL-------------------------KFSELPAGQNAIVAIMCY 800 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVF-TRDGVEKDKRALEIEEMQLKQAKKDLS------ 961 + +DS + + + + F + EK K ++ E ++ + L Sbjct: 801 SGYNQEDSVIMNQSSIDRGLFRSLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTG 860 Query: 962 EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL 1021 + L+ + + K LP D EE + + ++ Sbjct: 861 DRYAKLDVDGLVAPGTNVNGDDILIGKTAPLPED--------SEELGQRTQLHTKRDIST 912 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 + ++ + ++ + VK+ + R Q GDK A RHG KG I Sbjct: 913 PLKSTEQGVVDQVMLSTNGE----GNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYR 968 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 EDMP+ G DI++NP +P + IG + +L + + Sbjct: 969 QEDMPFTAEGLVPDIIINPHAIP---------------SRMTIGHLVECLLSKVSTLT-- 1011 Query: 1142 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 G F + ++L+ Sbjct: 1012 -------------------------------------GAEGDATPFTELTVEAVSKVLRA 1034 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 + G LY G TG + + V G Y +L H+VDDK+HAR+ G ++T+QP+ G Sbjct: 1035 KGYQSRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEG 1094 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK------------MY 1305 +++ GG RFGEME + ++G A L+E + SD V Sbjct: 1095 RSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYC 1154 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P + +L +E++++ I + E Sbjct: 1155 SVCRNSTQISQVYIPYAAKLLFQELQAMNIACRMYGE 1191 Score = 106 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 107/347 (30%), Gaps = 84/347 (24%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ------------S 61 + + L+ QL+SF +FIE ++ + Sbjct: 54 YWTVINSFFEEKGLVRQQLESFNEFIENT------MQEIVDDHSRLTLDQFTQYTGVAGD 107 Query: 62 YSGNSELQYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYERE--- 108 + E+ + L QE ++R +TYSAPL V ++ Sbjct: 108 ETRRYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVD 167 Query: 109 -----------APEGTVKDIKEQEVYMGEIPLMTDN------------------------ 133 +G V+ +E++ +G++P+M + Sbjct: 168 DPVEADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQG 227 Query: 134 GTFVINGTERVIVSQLHRSPG-------------VFFDSDKGKTHSSGKVLYNARIIPY- 179 G F+I+G+E+V+++Q + +F + G+V + + Y Sbjct: 228 GYFIISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRMYA 287 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM 239 R S + ++D +P ++ RAL ++ + + ++ Sbjct: 288 RASGTTGGVIRVSLPYTKVD----IPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQ 343 Query: 240 ELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 + E + ++ G+ + R + + + Sbjct: 344 PSIEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLP 390 >UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWJ9_MONSK Length = 2108 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 274/946 (28%), Positives = 387/946 (40%), Gaps = 212/946 (22%) Query: 599 VTDEIHYLSAIEEGNYVIAQANS---------NLDEEGHFVEDLVTCRSKGESSLFSRDQ 649 V I S+ E + ++ + + R K E + Sbjct: 1048 VRQNISLFSSELEDEIYVCTGDTLNPCLLNTSKIVANTSLFPPVFPVRHKQEFLTINSTD 1107 Query: 650 ---------VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP + +K V Sbjct: 1108 ALQFIQAPTKLFTGICPIQLISIATSLIPFLEHDDANRALMGSNMQRQAVPFMTPEKAFV 1167 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED--------------------- 739 GTG+E A DS +A G + +VD+ I +K + Sbjct: 1168 GTGLELQAARDSSTLVLADESGQILFVDSQSIKLKTEKHGRTFSELRSPPGTKGQRPQWG 1227 Query: 740 ----EMYPGEAG--------------IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 ++ A I Y LT +T SNQ+TC+ Q P V +GE VE+G Sbjct: 1228 KLSLDLKDQSAHPIEFSPERGGFSKEISSYELTDFTPSNQSTCLKQRPAVEIGEWVEKGS 1287 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR-------------- 827 +LADG T GE+ALG+N+ +A+MPW GYNFED+I+++ER+V ED Sbjct: 1288 LLADGSGTRDGEVALGKNVLLAYMPWEGYNFEDAIVINERLVFEDIYTSVHVERFDVDVR 1347 Query: 828 ----------------------------FTTIHIQEL-----ACVSRDTKL--GPEEIT- 851 F ++ E V+ T G E T Sbjct: 1348 NTKIIQVRNPENSFQLEDTLPENSILNIFRSLVPGEYLTRDLDIVTNKTSRNSGNENSTL 1407 Query: 852 -------------ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT-- 896 ++P L LD +GI+ G V GDIL+GK+ + L Sbjct: 1408 KTSTKDSLEALESINLPPKLPPKLRHLDANGIIKPGTWVQEGDILLGKLQIGPKDNLNNF 1467 Query: 897 ------------------PEEKLLRAIFGEKASD-------------------------- 912 PE +LL AIF + Sbjct: 1468 DIKAQNTPFAQKIQTLPFPEYRLLLAIFDLQNRTPDKTLPTQTSNLEGGKLWPTTFGEKL 1527 Query: 913 -VKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK------RALEIEEMQLKQAKKDLSEELQ 965 K+S+L +I + + + E+ + + L Sbjct: 1528 SEKESTLPSSQDKKEQIIGEKSLSSEEGERSPLSDLSAYKNTLPSQNFGSELTSGQDTLN 1587 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 +L A S + K+ + R L+ + Q A Q + Sbjct: 1588 LLAAEKSSNSGLFAHQIKNTSFKVGIGVKGRVLDYVVDGRISIFDGRQKANQNLPPRGSR 1647 Query: 1026 EK------------------KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 E ++ K G+ V ++LA K+RIQ GDKM+ Sbjct: 1648 ETPPGLWPSQREEREGRGGRTPFLEKHKTLIGEGFIQSAATSVSIFLAHKKRIQLGDKMS 1707 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 GRHGNKG++S I P +DMPY ++G PVD+VLNPLGVPSRMN+GQ+LET G++A Sbjct: 1708 GRHGNKGIVSLILPPQDMPYLQDGKPVDVVLNPLGVPSRMNVGQVLETLFGLSAFYSHKV 1767 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 M ++ +A + + A + ++ S + G+P Sbjct: 1768 YRIMPFDER-IAPSQSIEKNTLQENASLSLSRPETSRSLVYGHLRKLKTKAGVPPKRAEI 1826 Query: 1188 DGA------------KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + +L L D G+ L+DGRTGE F +P VGY YM KL Sbjct: 1827 SELGLQKGGYPRTLKSIKKGSQLNWLFDPNNPGKTHLFDGRTGEIFYQPALVGYSYMFKL 1886 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 HLVDDK+HARSTG YSLVTQQPLGG+++ GGQR GEMEVWALE +G A LQE LTVKS Sbjct: 1887 IHLVDDKIHARSTGPYSLVTQQPLGGRSKKGGQRLGEMEVWALEGFGTASILQEFLTVKS 1946 Query: 1296 DDVNGRTKMYKNIVDGN-HQMEPGMPESF-------NVLLKEIRSL 1333 D++ R +++ N +E ESF V +E+RSL Sbjct: 1947 DEIYSRNNFLFHLMRRNWESLEKNENESFARDAIKARVAGEELRSL 1992 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 155/626 (24%), Positives = 257/626 (41%), Gaps = 136/626 (21%) Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 + + E K I Y G+IPLMT+ G+F+ING RV+V+Q+ R P V+F K Sbjct: 350 MTNHFVERSTRQKKQIF--WFYFGDIPLMTERGSFIINGAPRVLVNQIIRCPSVYF---K 404 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDP-KDNLFVRIDRRRKLPATIILRALNYTTE-- 218 K + Y A + GSWL E D + L+ RID+ + PA I+L L Y + Sbjct: 405 VKLDQKNRRSYTASFLSEYGSWLRLETDRLSNRLWARIDKSPRFPADILLMGLGYVLDSE 464 Query: 219 -----------QILDLFFEKVIFEIRDNKLQMELVPERLRGETA-SFDIEANGKVYVEKG 266 L + + F + + + + + ETA + + + Sbjct: 465 NLNSVKYGLSKNEFKLNAQTLSFGKENKVVINKNIVKNSIFETASTLNSTFPASPFTSLK 524 Query: 267 RRITARHIRQLEKDDV---------------------------------KLIEVPVEYIA 293 + +TA++I+ ++++ K + ++ A Sbjct: 525 KYLTAKYIQVYQENNNLPTRQHDEREVQRPPRNGGEGSVGRTPFLDWIGKGLSKGLQSTA 584 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE---------TLFTNDLDHG 344 G+ +++ + I L + A+L++ I+ Sbjct: 585 GEKQFAKLLNKVENKKISKEQNYLWSSVSARLAEPKISSIQSPRPVLSGSIGKKFSSTKN 644 Query: 345 PYISETLRVDPTNDRLS---------------ALVEIYRMMRPGEPPTREAAESLFENLF 389 T+ D T AL +++ PG + S F N F Sbjct: 645 FVFKNTVENDNTRTPRRTNAGSKSGITINTATALQALWKKCNPGRWTSALGCYSFFYNKF 704 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV------- 442 + RY + VGR++ N+ L R L+ +D++ L +++ + Sbjct: 705 LNPKRYSIGRVGRIRLNKRLRRNPECKIPTLTPEDVLLAFHYLTELKIADAKENTFSLEL 764 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRV------------------------------- 471 DDIDHL NRR+R GE+ +NQFR+ L R+ Sbjct: 765 DDIDHLKNRRVRLPGEILQNQFRLALSRIPYSAIRLQDNKTNIRNEVLQQREKVQRPQGV 824 Query: 472 ---------------------ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 + ++++ + ++E F + Q Sbjct: 825 PLEGRVGRSPPSGEAKKVEQNQNSIRKNFDSVSSSRSEDSVPPGIPAFQSTLRELFNTGQ 884 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 LSQ+MDQ NPL+EITHKRR+S+LGPGG+ R++AGF VR++HP+H+GR+CPIETPEG N G Sbjct: 885 LSQYMDQTNPLAEITHKRRLSSLGPGGVGRDQAGFAVREIHPSHFGRICPIETPEGQNAG 944 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTD 596 L+ SL+ YA+ N+ GFL++P + + Sbjct: 945 LVGSLASYARINDDGFLQSPALPIEN 970 >UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 86 RepID=Q4A245_EHV86 Length = 1156 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 214/1381 (15%), Positives = 413/1381 (29%), Gaps = 316/1381 (22%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQYVSYRLGEPVF------ 80 ++ Q++S+ FIE + + + + S + + + + + P Sbjct: 23 VAHQIESYDHFIENQLPY---IISEGSDISYMHSSGKVSHHVHFTNPSVNRPAIQESDGF 79 Query: 81 ----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY----MGEIPLMTD 132 ++RG+TYS+ + V + I++R + + ++V+ + +IP+M Sbjct: 80 YKPITPHIARLRGLTYSSTVVVDV---IHDRINHTVSPPTLINRKVFRNVIIAQIPVM-- 134 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 RS + S+ + ++ DP Sbjct: 135 -----------------VRSKLCYLADVSENDLSADAKKHECKV------------DPGG 165 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 + + + +P T + V + + + E Sbjct: 166 YFIISGNEKTLIPQT--------------KIRTNHVFIFPSKHGEKHKYTAEV------- 204 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + E R T+ + + V + Sbjct: 205 -------RSCHEAKLRSTSTIYMNINDISNGEVPVITCKLPFLKSNLSV----------- 246 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV--DPTNDRLSALVEIYRMM 370 L L I N I + N A+++ Sbjct: 247 ------FILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAIMDWVGRN 300 Query: 371 RPGEPP--TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 + T+E+ E +++ SE + + I + Sbjct: 301 VTSDTTRATKESREKYIDHIITSE------------LAPHMGLVNNPETNKKKMIFIGHM 348 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR-----VGLVRVERAVKERLSLGD 483 +++L+ + G+ VDD D N+RI S G + R + + +++++ Sbjct: 349 IQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPR 408 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSS----------------QLSQFMDQNNPLSEITHK 527 T ++++ K I++ +K F + + Q + + ++ + Sbjct: 409 EATFNVGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGAS 468 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE---- 583 R+I+ + RE R +HP+ +G VC +TPEG GL+++L++ + Sbjct: 469 RKINT----PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAITTRIRIGAPM 524 Query: 584 ---YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 L T + T Y+ N I +D+ + + R G Sbjct: 525 QPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIKEIATQMRSLRRHG 584 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + ++ V S +L+ L D + MQ P + +K Sbjct: 585 NLPFDCS--ISISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQN---PAVVPNK--- 636 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 R G+++Y+D++ + M DI + Sbjct: 637 --------------YTRMLREGIIEYIDSAE------QTNMRVAIHHTDI-------EQD 669 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 + T I P + G V P D + R+A+ + Sbjct: 670 EYTHIEIHPALLTGICVS------QIPFCDHNQSP-----RIAYQAAQ----------CK 708 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + + +TT + L +G T P V L S +V GA Sbjct: 709 QAI--GLYTTNFAERLDT------VGHVLATPQKPLVTTRLEELLGTS-VVRSGAV---- 755 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 +V + G Q +I D L + + D Sbjct: 756 -PIVAIMCYSGFNQDDSVLLNQSSI---------DRGLFTSFAYHTIRDEEKGTGADIER 805 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 + +K+A ++ + G VL+ V L P++ + Sbjct: 806 FENPKNIPGCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQADPKEGEVR- 864 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 + + + + P VKV R Sbjct: 865 ----------------RDTKRDRSHVLRTDEPVVVDAVFLSKTPEGHGYVKVRTRAIRIP 908 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 GDK + RHG KGV P D P +G DI++NP H + Sbjct: 909 MVGDKFSARHGQKGVCGVTMPAADFPCTADGVAPDIIINP---------------HAIPS 953 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 IG + +L + +G Sbjct: 954 RMTIGMLMEMVLSKVA---------------------------------------CYEGE 974 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 F G I + L+ + G LY+G +GE E + + Y +L H+V Sbjct: 975 TQDGTPFTGNNIELIADRLETHGMQRYGNEMLYNGMSGEMLESMIFIAPCYYQRLKHMVV 1034 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV-- 1298 DK HAR+ G+ L+T+ P G+++ GG R GEME ++ ++GA ++ L +SD Sbjct: 1035 DKSHARNRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFEC 1094 Query: 1299 --NGRTK-----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + ++ G H +P S +L++E+ + I+ L Sbjct: 1095 VACEKCGHFAREGTDDTSVKNSGMWCEHCKTGKHCTHTQLPYSMKLLIQELAAAHISATL 1154 Query: 1340 E 1340 E Sbjct: 1155 E 1155 >UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas americana RepID=O21237_RECAM Length = 1478 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 270/984 (27%), Positives = 449/984 (45%), Gaps = 82/984 (8%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 + +R F +++ +P LL I S+ F+++ L+ +S+ ++ Y GN Sbjct: 10 KKDLSLRLGFSSINEIVPIPNLLKISKSSYNNFLQRFVPYSKRLDVGIQSL--LKKYFGN 67 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 ++ Y G + EC G+TYS PL V L++ + + ++ Y+G Sbjct: 68 ---SFICYSFGVSEKNPDECLENGLTYSIPLYVFLKVNMKDNVKDTI-------KKYYIG 117 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 EIPL+TD+G+F+ING E +++QL R GV+ + K K R + R LD Sbjct: 118 EIPLLTDSGSFIINGVENTVINQLVRDSGVYINKSKSP---FIKTSLKIRGLKGRSIQLD 174 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVPE 244 + +D + + +ID + + + + + + +++LD F + Sbjct: 175 YFYD--NFIGQKIDTKTLISGKNLNQNITHQEIDKLLDSFKISFKEIGETFTYSITEYKY 232 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD---DVKLIEVPVEYIAGKVVAKD- 300 G F+ + K K + + + + I + + K ++ D Sbjct: 233 CNMGWFIDFNWKEISKYRFIKKNKNIISTSLSFDNNLLANNDYISILNTVVNNKFISNDK 292 Query: 301 -----------YIDESTGELICAANMELSLDLL------AKLSQSGHKRIETLFTNDLDH 343 Y D + +I N + S L + LS + L N + Sbjct: 293 FLNHDLFLLDIYKDNKSIFIIENTNDDFSYPLELLNKVGSHLSSFKNSDFLFLIENKNIN 352 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED-----RYDLS 398 YI L+ P + R S V I + + ++ + +N FF E + L Sbjct: 353 YQYIFINLKEQPDSIRNSLQVVIESKKK--KLLMFFNSKHVLKNDFFLEKDVLFHNFKLG 410 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID--HLGNRRIRSV 456 +GR+K N E L+ D +++ LI I G E D + L NRR ++ Sbjct: 411 PIGRLKINLKFGLN--EKKEELTSIDFTRILRYLIQIDKGFIENDIYEEQSLLNRRFNNI 468 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGD--LDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 GE + L+ E K +S D + ++ + + N + + + S L Q+ Sbjct: 469 GEHLYSCLSDYLISKE-DSKYSVSKEDYIKNQMLFKKINNCRNAFYFLIRYLNKSSLCQY 527 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 +Q N LS + H R++S +GPGGL + E+RDVH + YG++CPIETPEG ++G++N+ Sbjct: 528 TEQANALSYLGHTRKVSIMGPGGLKNDNISLEMRDVHISTYGKICPIETPEGKSVGVVNN 587 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL- 633 LS+Y +TN LETPY V + VT+ IHYL+ EE Y IA A L ++G F+ Sbjct: 588 LSLYTRTNTLFQLETPYIFVKENFVTNIIHYLTPQEEKYYKIAHATEVLKKDGSFLNTKE 647 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 + CR VDY+++S+ Q+ S+ AS+IPFLEH+D NRALMG+NMQ+QAVP L Sbjct: 648 IYCRYLHSLITVDSKNVDYIEMSSGQITSLSASMIPFLEHNDGNRALMGSNMQKQAVPLL 707 Query: 694 RADKPLVGTGMERAVAVD-----SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 +K L+GTG+E + D + V + +I+ K N++ ++ + Sbjct: 708 NLEKSLIGTGIEGIIGRDFFNISKNLLLEKMTNENVFGISILKILKKENKNIIFSQFVDL 767 Query: 749 DI-----YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 I Y+ K+ SNQ T I+ + ++ G S EL+LG N+ V Sbjct: 768 FIKNHFLYSTIKHKNSNQKTDIDFKYVNKKNINIFENNIDNIGYSIKNNELSLGNNVLVG 827 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS 863 F NG+ FEDSI++SER+V+++ F +IH++ + K E I + + Sbjct: 828 FTSMNGHTFEDSIVISERIVRDNYFQSIHLEVYKTMEMYEKDSQEIIRNFL------STD 881 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 LD G++++G V DIL+GK K + L+ + KL+ V D S+R N Sbjct: 882 FLDVDGVIHLGTNVCTNDILIGK--EKRQLLLSEKNKLI----------VYDKSIRYKNK 929 Query: 924 VSGTVIDVQVFTRDGVEKDKRALE 947 G VI + F V+ +K + Sbjct: 930 KKGVVIQIAKFFDSLVDLNKHYIT 953 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 138/296 (46%), Positives = 196/296 (66%), Gaps = 4/296 (1%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L++VKV +A K IQ GDK+ GR+GNKGVIS+I +EDMPY +GTP+DIVL+PLGV SR Sbjct: 1183 LRMVKVVVACKHNIQVGDKLTGRYGNKGVISRILSLEDMPYLRDGTPLDIVLSPLGVSSR 1242 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MNIGQ+LE HLG+A + K+ +++ V K R+++ Y ++ L +D Sbjct: 1243 MNIGQLLECHLGLAGVELSKKLQQIIQTYDIVGKSRKYLSMLYRNKKELLLLNSL---ND 1299 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 +++ L +N+ G+PI+TP+F+ A +I LL++ L ++ + DG TG + VT Sbjct: 1300 SQIICLFKNISHGIPISTPIFNSANNFDIDNLLRISGLNIQSKVTIIDGITGVVLDNKVT 1359 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VGYMYM+KLNHL+D K+H RSTG Y+++TQQ GK++ GGQR GEMEVWAL+AYGAAYT Sbjct: 1360 VGYMYMMKLNHLIDHKIHGRSTGPYNIITQQASKGKSRNGGQRLGEMEVWALQAYGAAYT 1419 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 LQEMLT KSD R+ +N + G +P +F +L E+R LG+ + + Sbjct: 1420 LQEMLTFKSDSTISRSSFLQNFIRG-KTSRIDIPRTFKLLRDELRVLGMELNFIVK 1474 >UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSL6_9ALVE Length = 1255 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 186/1114 (16%), Positives = 338/1114 (30%), Gaps = 215/1114 (19%) Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 A + S L +L G + + + + R AL + Sbjct: 273 CLAPDELNSERSLFELLCDGLMADTFVAERVTCMLEQMRTHPELKHVHSREDALYYLGSK 332 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-------GSGILSK 422 R A SL +D + R LL + G Sbjct: 333 FEVVFREKRGAGVSLDGIALEVDDAAMSPVEKSVSVARRLLDSLMLVHCPKGAEGGKAKV 392 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV----RVE-----R 473 D ++ + +KL+ + G D+ D + + + G++ + L R+E + Sbjct: 393 DCLVLIFRKLMALVRGDIAPDNADAMDVQELLLPGQLFGALLKEVLQSSLLRLEGALAKK 452 Query: 474 AVKERLSLGDLDTLMPQDMINAKP-----ISAAVKEFFGSSQLSQ--------------F 514 + + ++ G T++ ++I ++ ++ F + ++ Sbjct: 453 SRQAQVGKGRAPTVLSAELIRNTFMGVCDVTKRMESFLATGNITSRSGLDLQQTTGFTVV 512 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 D+ N ++H R A+ G +E VR + P +G +CP+ TP+G GL+N Sbjct: 513 ADKLNAYRYLSHFR---AVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNH 569 Query: 575 LSVYAQT-----NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 L+ Q + G + ++ + + S NY A N+ + +G Sbjct: 570 LAAPCQPVVRIASPEGVIPGLEEELA-SLGVQLVRS-SKTSTANY-GAGENAYVTLDGRV 626 Query: 630 VEDLVTCR--------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 + + R + + +++ Q + L F R + Sbjct: 627 LGKVARSRLEAVAEELRRLKIDKDCPGVPADLEIVACQTPASFEGLWLFTGPCRMVRPV- 685 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 ++ LV G V + T I +K E+ Sbjct: 686 --------RDLATGNEELV--GPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIEL 735 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 P I LT ++ NQ P + + +L + + + Sbjct: 736 SPISMLSVIAGLTPFSNH------NQSP-----RNMYQCQMLKQTMAIPYLNHPYRTDNK 784 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 V + + + + ++S G I A I + G Sbjct: 785 VYKITYPQFPMVRTTVLS-----------------EANFDVKPAGTNAIVAVIAHSGFDM 827 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L ++ K G K Sbjct: 828 EDAL-----------------IISK--------------------GSYDRGFKH------ 844 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA 981 G+V +V K + + + + ++ L+ I + Sbjct: 845 ----GSVYKTKVINCP--PKGTVGSRLAQFRADNHSVKGEKVVKDLDYDGIPYIGQQVHE 898 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 G P R L G + K + ++ + E + + Sbjct: 899 GD---------PICRVLNKGTGE-AKLEKYKEGEVAWVEQVNMIGGGGWWGGGAGARNPG 948 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 + + + L + R GDK + RHG KGV++ + P DMP+ +G DI+ NP Sbjct: 949 GIKDGSERMSIKLRLPRNPVVGDKFSSRHGQKGVMAILWPQADMPFSTSGISPDIMFNPH 1008 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 G+PSRM IG ++E G AA G + V+ Sbjct: 1009 GMPSRMTIGMLIEFMAGKAAALTGMPV------------------------------VNA 1038 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 ++F L + D E LK G LY G GE Sbjct: 1039 NSFRQYRGKGLLDTEHNNEKDPYAPGDTTAHEYFGETLKKFGYEYLGAEELYSGMHGEPL 1098 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + + +G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME +L ++ Sbjct: 1099 KTHIYMGVVYYQRLRHMVLDKFQVRATGPIDPLTRQPVKGRKKHGGVRFGEMERDSLISH 1158 Query: 1282 GAAYTLQEMLTVKSDDVNG-RTKMYKNIVDGNHQME------------------------ 1316 G + L + L SD +I+ H E Sbjct: 1159 GTSALLADRLLKCSDACEDWVCPECGSILSYAHSPETVKRYSGREAAAQAPICRACSTER 1218 Query: 1317 --------PGMPESFNVLLKEIRSLGINIELEDE 1342 +P F + E S+ I + L + Sbjct: 1219 GIEVRCAAVTLPYVFRYMSAEFASMNIRLRLRVK 1252 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 148/959 (15%), Positives = 293/959 (30%), Gaps = 177/959 (18%) Query: 28 LSIQLDSFQKFI-----EQDPEGQYGLEAAFRSVFPIQSYSGN-SELQYVSYRLG----- 76 + +DSF F+ + GL S + + G L Sbjct: 47 VKPHVDSFNLFVITGLTPEATNEILGLLPDDISPAEMTWHDGTTVRCWLSDLSLHQPIRG 106 Query: 77 ----EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 +P C+ +TYS L + + + E P + V +G +P+M Sbjct: 107 EDVLDPRLLPTHCRQAHITYSGELSATVNVSLGTGEPPVQMAR------VPLGLVPIMVR 160 Query: 133 N------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 + G F++NG E+VI + F + + S+ Sbjct: 161 SEACHLHGMPPSKMVQCGEDPDERGGYFIVNGNEKVIRLLIMPKSN-FPVALYRPSFSNR 219 Query: 169 KVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRK---LPATIILRALNYTTE 218 LY+A + R + + +VR + +P ++L+ L Sbjct: 220 GPLYSAYAVQMRSMRPDLTTQTVTMHYRKDGTCWVRFTYLKNEYLIPLMLLLKCLAPDEL 279 Query: 219 QILDLFFEKVIFEIRDNKLQMELV---PERLRGETASFDIEANGKVYVEKGRRITARHIR 275 FE + + + E V E++R + + G + R Sbjct: 280 NSERSLFELLCDGLMADTFVAERVTCMLEQMRTHPELKHVHSREDALYYLGSKF-EVVFR 338 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET 335 + V L + +E + ++ ++ LL L + Sbjct: 339 EKRGAGVSLDGIALEV------------DDAAMSPVEKSVSVARRLLDSLMLVHCPKGAE 386 Query: 336 LFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRY 395 +D I L + + + P + E L F Sbjct: 387 GGKAKVDCLVLIFRKL-----------MALVRGDIAPDNADAMDVQELLLPGQLFGA--- 432 Query: 396 DLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRS 455 L +E+ S +L + + KK + GKG + Sbjct: 433 --------------LLKEVLQSSLLRLE--GALAKKSRQAQVGKGRAPTV---------L 467 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 E+ N F + + D+ M + S + + ++ + Sbjct: 468 SAELIRNTF--------------MGVCDVTKRMESFLATGNITSRSGLDLQQTTGFTVVA 513 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 D+ N ++H R A+ G +E VR + P +G +CP+ TP+G GL+N L Sbjct: 514 DKLNAYRYLSHFR---AVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHL 570 Query: 576 SVYAQT-----NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV 630 + Q + G + ++ + + S NY A N+ + +G + Sbjct: 571 AAPCQPVVRIASPEGVIPGLEEELA-SLGVQLVRS-SKTSTANY-GAGENAYVTLDGRVL 627 Query: 631 EDLVTCR--------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL-- 680 + R + + +++ Q + L F R + Sbjct: 628 GKVARSRLEAVAEELRRLKIDKDCPGVPADLEIVACQTPASFEGLWLFTGPCRMVRPVRD 687 Query: 681 -------MGANMQRQAVPTLRADKPLVGTGMERAVAVD----------SGVTAVAKRGGV 723 + M++ + + L + +V + S ++ ++ G+ Sbjct: 688 LATGNEELVGPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISMLSVIAGL 747 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 + + ++ + + +M I L R++ P P+ R VL Sbjct: 748 TPFSNHNQSPRNMYQCQMLKQTMA--IPYLNHPYRTDNKVYKITYPQF----PMVRTTVL 801 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS-RD 842 ++ + G N VA + +G++ ED++++S+ + Sbjct: 802 SEA---NFDVKPAGTNAIVAVIAHSGFDMEDALIISKGSYDRGFKHGSVYKTKVINCPPK 858 Query: 843 TKLGPEEITADIPN---VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 +G N GE + LD GI YIG +V GD + +V KG + E Sbjct: 859 GTVGSRLAQFRADNHSVKGEKVVKDLDYDGIPYIGQQVHEGDPIC-RVLNKGTGEAKLE 916 >UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata RepID=B6AI41_9CRYT Length = 1341 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 218/1445 (15%), Positives = 429/1445 (29%), Gaps = 300/1445 (20%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI-QSYS---------------GNSELQYV 71 + ++SF F+ GL ++ I ++ Sbjct: 51 VWPHIESFNCFL------LTGLSNIVINLPSIYIDSDYVIDDCELNVGYIPREYLRIKVT 104 Query: 72 SYRLGEPVFDVQE----------CQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++G+P+F E + ++YSAPL + E E + K Sbjct: 105 CIKVGKPIFGSTESSNTKMYPCSARNGHLSYSAPLWI-------EFECYNSSSKSSVRHN 157 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 ++ G IP+M + + SP + + G Sbjct: 158 LFAGSIPIMVRS----------LACHLYSLSPNELVANGEDPNEVGG------------- 194 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 + + +R +++ + L+ +T+ I + ++ +R++ Sbjct: 195 ----YFIINGNERVIRYVIQQRCNYPVGLKRSRFTSRDIFGTEYAILLRSLRNDGTSTAN 250 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 L G T + + + + + ++ + + + +D Sbjct: 251 Y---LYGTTDNQCVYR--ILLNRQEWLLPFWNVLLAVGSIYDAKTLRNKILQYCCNTRDE 305 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 D G + L + L S + + I Sbjct: 306 YDPLYGVINM-------LTIEWGLDNSSGVENSVIPPSYDGAFGDIEII--------ENR 350 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 L + +++ G +F+ GR + +L E + L Sbjct: 351 HLHNLGKLVWEG-------------VVFYLPPGSLYQDAGRFIIDNHILVHLPEWNAKL- 396 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK----- 476 + +I + KL+ ++ G+ + ID + I S G + + + + + ++ Sbjct: 397 -ECLILMFIKLLKLQYGQIREESIDSFAYQEILSSGNLYASVLKDAIFSFLQKIRMIYIT 455 Query: 477 ERLSLGDLDT-------------------------LMPQDMINAKPISAAVKEFFGSSQ- 510 E + + + N I ++ F + Sbjct: 456 EIRNRNSSKSEKEASDELPLPYSSAALDLLRDDSFFKTSLIRNISMIPKRIQYFMATGNI 515 Query: 511 ------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + D+ N ++H R A+ G +VR + +G + Sbjct: 516 KTTQLDLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMKTTDVRKLMGETWGFL 572 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV-----------TDGVVTDEIHYLS 607 CP+ TP+G GL+ LS +++ + + DG+ T I + S Sbjct: 573 CPVHTPDGEPCGLLLHLSQDTIPVTQFEIQSTLKNLRDYLVGQNIPCDDGLGTLSIQWGS 632 Query: 608 AIEEGNYV-------------IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 + YV + + + E L + ++ + Sbjct: 633 LNLDDIYVPDLSKSVPVMLDGRVMFHIPKLKFTFWQEKLRNLK-WSKTPSILPVHTEIAC 691 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAVDS 712 + V + + F R ++ + P + + T E ++ Sbjct: 692 IPPD--CGVFSGIFMFTAPGRLVRPVLHLKSNKIDWIGPLAQPWMDIGVTEEETQKSIKL 749 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 + G S I N D+ E Y L N +Q Sbjct: 750 YNLQMKLFGLYRNDNITSDIETTDNMDKNQIEEMIKKDYTLG----CNPVMYTHQ----- 800 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 + +L+ S +P+ +N + +++++ T + Sbjct: 801 ---ELHPSTILSITASL---------------IPYAHHNQSPRNMYQCQMLKQTMGTPCY 842 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 +R + IT P V G Sbjct: 843 SYPYRTDNRMYR----IITPQNPLVITKGY-------------------------ASYGF 873 Query: 893 TQLTPEEKLLRAIFGEKASDVKDS-SLRVPNGVSGT----VIDVQVFTRDGVEKDKRALE 947 ++ + A+ D++D+ L + G V ++ K++ + Sbjct: 874 SEYPTGTNAIVAVISHSGYDMEDAMVLNKASYERGIFHACVYKTKILFAAPNSVIKKS-D 932 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT--DE 1005 E + D ++ L A I LV G + + Sbjct: 933 AESYRFHNIGPDGKLVIKELGADGLPMIGQKLVKGSPMCRVEKLGSGGVISNAIVQTYHD 992 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 +++ +E++ L E G + + G + + + L + R GDK Sbjct: 993 DEEAYVEKINRVGSGLSTESHSDSTLGGSGGPGGSEYSSGYGEKISLKLRIVRNPMVGDK 1052 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 A RHG KG++S + P E+MP+ E+G DI+ NP G PSRM +G ++E G AA G Sbjct: 1053 FASRHGQKGILSMLWPHENMPFGESGIVPDILFNPHGFPSRMTVGMLIECMAGKAACLHG 1112 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 +D + F + K M I Sbjct: 1113 ------------------------------ASALDATPFHRNITDKQTILEDKEMGIDLS 1142 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 + + L G L++G TG + + +G +Y +L H+V DK Sbjct: 1143 --KQSTVDYFGKALLKTGFQYFGCEPLFNGMTGTEMPCHIFMGVIYYQRLRHMVADKAQV 1200 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1305 RSTG +T+QP+ G+ + GG RFGEME +L +YG + + + L SD+ Y Sbjct: 1201 RSTGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSIIADRLLKCSDEHKAYVCPY 1260 Query: 1306 KNIVDGNHQME----------------------------PGMPESFNVLLKEIRSLGINI 1337 ++ +P F L E+ ++ I I Sbjct: 1261 CGLIFSAILPRKTTNFQNRLATTLPHVAICKVCKTPCRLITLPYVFRYLCNELATMNIVI 1320 Query: 1338 ELEDE 1342 LE E Sbjct: 1321 RLELE 1325 >UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota RepID=Q5CSG7_CRYPV Length = 1281 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 160/1046 (15%), Positives = 312/1046 (29%), Gaps = 209/1046 (19%) Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 L GR + +L E + L + +I + KLI ++ + + ID + + S Sbjct: 333 LQEAGRFLIDNYVLVHLEEWNAKL--ECLILMFIKLIKLQLNEIREESIDSFAYQELLSP 390 Query: 457 GEMAENQFRVGLVRVERAVK-------------ERLSLGDLDTLMPQDMI-------NAK 496 G + F+ + + ++ + + L+ N Sbjct: 391 GNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESKNGVNLLRDTAYFKSVLSKNIS 450 Query: 497 PISAAVKEFFGSSQ-------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 I ++ F + + D+ N ++H R A+ G Sbjct: 451 MIPKRLQYFMATGNVKTTQLDLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMK 507 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 +VR + +G +CP+ TP+G GL+ LS + R++ + +++ I Sbjct: 508 TTDVRKLTGETWGFLCPVHTPDGEPCGLLLHLSQDCIPVTQWDSQETLRRLRNYLISHGI 567 Query: 604 ---------------------HYLSAIEEGNYVI-----AQANSNLDEEGHFVEDLVTCR 637 S + + + ++ + L T + Sbjct: 568 SCDDGLGSLSSTWGIESSSRDDLYSPDLTKSIPVMLDGRVLFHIPREDFMVWENKLRTLK 627 Query: 638 SKGESSLFSRDQVDYMDVST-------QQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + + V + + L+ + H + + + + + Sbjct: 628 -WQTNPSVLPVHAEIACVPPDSGMFSGIYIFTAPGRLVRPIMHLETAQVDWIGPLGQPWM 686 Query: 691 PT-LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 + ++ T + G I +E+++ + Sbjct: 687 NIGVTEEETRKSTKLLEIQKRLIG------------------ISDTESEEQLKNDLKALK 728 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 L K + + ++ +P + +L+ S +P+ Sbjct: 729 --KLIK----DNDRVLSSVPVNYTHMELHPSTILSVTASL---------------IPYAH 767 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 +N + C +G L Sbjct: 768 HNQ----------SPRNM--------YQCQMLKQTMGT-PCLNHPYRTDNKMYRLLT--- 805 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS-----SLRVPNGV 924 +T G + G ++ + A+ D++D+ S Sbjct: 806 -PQEPTIITKG------YSSFGFSEYPTGTNAIVAVMSYSGYDMEDAMILNKSSYDRGMF 858 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 V ++ + K++ + E D ++ L A I L G Sbjct: 859 HACVYKTKIISAAPPSATKKS-DAESYFFHNIGPDGELVVKELSADGLPNIGQRLTKGSP 917 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 + E + ++ G + Sbjct: 918 ICRVERIGSGGGPSNATIQTYHDDEVAFVEKINRIASGISIELQQDSLSGGGGDGASSSS 977 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 G + V + L + R GDK A RHG KG++S + P E+MP+ E+G DI+ NP G P Sbjct: 978 GYGEKVSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQENMPFSESGMVPDILFNPHGFP 1037 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRM IG +LE+ G AA G + +D + F Sbjct: 1038 SRMTIGMLLESMGGKAACIHGAR------------------------------SLDATPF 1067 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 + L+ + + + L+ G LY+G TG + Sbjct: 1068 NINISDDLSRSEEN--CEDDKAGEKTTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCH 1125 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + +G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME +L +YG + Sbjct: 1126 IFMGVIYYQRLRHMVADKAQVRATGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVS 1185 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIV------------------------------DGNHQ 1314 L + L + SD+ ++ + Sbjct: 1186 SILVDRLLICSDEHRAYVCPKCGLIISSISKRAMAQSMSSSKLSNCIPPIAVCRVCKSPC 1245 Query: 1315 MEPGMPESFNVLLKEIRSLGINIELE 1340 +P F L E+ ++ I I L Sbjct: 1246 RIITLPYIFRYLSNELAAMNIVIRLH 1271 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 134/1001 (13%), Positives = 283/1001 (28%), Gaps = 240/1001 (23%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS----EL-------QYVSY--- 73 + ++SF F+ GL+ +++ I SG EL +Y+ Sbjct: 13 VWPHIESFNTFL------SVGLKNIVKNLPKIYVDSGFIQDDCELNAAYSPAEYLRIGVT 66 Query: 74 --RLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++G+P Q + ++YSAPL E E ++ + + Sbjct: 67 SAKIGKPIFGNSESSGTKLTPQHARNGHISYSAPL-------WLEFEGYNSSLDTVSKHS 119 Query: 122 VYMGEIPLMTDN------------------------GTFVINGTERV--IVSQLHRSPGV 155 +Y G IP+M + G F+ING ERV V Q + + Sbjct: 120 IYAGTIPIMVKSSSCHLFGLGTKELVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPI 179 Query: 156 FFDSDKGKTHSSGKVLYNARIIPYR------GSWLDFEFDPKDNLFVRIDRRR-KLPATI 208 + T S Y + R ++L D + V ++R+ +P Sbjct: 180 GLKRPRFATFDSFGSEYAVLMRSLRDDGTSTANYLYGTSDHQCIYRVLLNRQEWLIPFWP 239 Query: 209 ILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG-ETASFDIEANGKVYVEKGR 267 +L A+ ++ + + + + + + V V+ Sbjct: 240 LLMAVG--------SIYDSNVLRSKILQYCNPKDENLFNTINMLTLEWGLDNSVGVDAE- 290 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 + D ++E + G++V + + L + L + Sbjct: 291 -FNSVSFGNKGPGDTDILENRYLHQIGRLVWE--------------GVAFHLPPGSLLQE 335 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 +G I+ L+ E L + L EI E+ +S Sbjct: 336 AGRFLIDNYVLVHLEEWNAKLECLILMFIKLIKLQLNEI----------REESIDSFAYQ 385 Query: 388 LFFSEDRYD--LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 S L F + + + S + Sbjct: 386 ELLSPGNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGE---------------------- 423 Query: 446 DHLGNRRIRSVGEMAEN--QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVK 503 N+ ++ + + F+ L + + +RL Q + + Sbjct: 424 ---KNKESKNGVNLLRDTAYFKSVLSKNISMIPKRL----------QYFMATGNVKTTQL 470 Query: 504 EFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 + S + D+ N ++H R A+ G +VR + +G +CP+ T Sbjct: 471 DLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMKTTDVRKLTGETWGFLCPVHT 527 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI-------------------- 603 P+G GL+ LS + R++ + +++ I Sbjct: 528 PDGEPCGLLLHLSQDCIPVTQWDSQETLRRLRNYLISHGISCDDGLGSLSSTWGIESSSR 587 Query: 604 -HYLSAIEEGNYVI-----AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 S + + + ++ + L T + + + V Sbjct: 588 DDLYSPDLTKSIPVMLDGRVLFHIPREDFMVWENKLRTLK-WQTNPSVLPVHAEIACVPP 646 Query: 658 -------QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP------------ 698 + + L+ + H + + + + + ++ Sbjct: 647 DSGMFSGIYIFTAPGRLVRPIMHLETAQVDWIGPLGQPWMNIGVTEEETRKSTKLLEIQK 706 Query: 699 ----LVGTGMERAVAVD---------------------------SGVTAVAKRGGVVQYV 727 + T E + D T ++ ++ Y Sbjct: 707 RLIGISDTESEEQLKNDLKALKKLIKDNDRVLSSVPVNYTHMELHPSTILSVTASLIPYA 766 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 ++ + + +M G L R++ P + +G Sbjct: 767 HHNQSPRNMYQCQMLKQTMG--TPCLNHPYRTDNKMYRLLTPQEPT--IITKG-----YS 817 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR-----D 842 S E G N VA M ++GY+ ED++++++ F + + Sbjct: 818 SFGFSEYPTGTNAIVAVMSYSGYDMEDAMILNKSSYDRGMFHACVYKTKIISAAPPSATK 877 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 +I GE + +L G+ IG +T G + Sbjct: 878 KSDAESYFFHNIGPDGELVVKELSADGLPNIGQRLTKGSPI 918 >UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia intestinalis RepID=A8B9W7_GIALA Length = 1293 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 216/1444 (14%), Positives = 448/1444 (31%), Gaps = 278/1444 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG------NS 66 K + L ++Q+DS+ F++ ++ S PIQ N Sbjct: 12 KVWKVVDSWFYCRGLAAMQIDSYNHFVKHT------MKNIMASFPPIQVTRTENFCCYNH 65 Query: 67 ELQYVSYRLGE-PVFDVQECQIRGVTYSAPLRVKLRLVI--YEREAPEGTVKDIKEQE-- 121 L + +L +C+I+ +Y A ++VK+ I Y EG V+++ + Sbjct: 66 ILSFSDPQLEPNVHIKPNDCRIQSSSYMAAIKVKISYTIQQYSFSNNEGLVQEVTYEPKL 125 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 + P+M ++ +N T +V S + + + + +I G Sbjct: 126 IDFCLFPVMVNSCLCYLN-TNKVAGSDIKAHRIINDECPYDEGGYFIIRGAEKAVIAQEG 184 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 + P L + D K+P T L + N T + + Sbjct: 185 NR------PNRLLILPGDPGSKIPYTAQLVSTNSTKNLHSKVVLKYW------------- 225 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 G+ + + ++ + D + + + A+D Sbjct: 226 ------------STNKWGRTIQDINQPQITFTMQGIRDDLPLFLLILALWQDNVYAARDL 273 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 + + + ++ EL LL P + + Sbjct: 274 L---SIVVPDESDTELIEHLLPSY-----------------------NLFCSTPQSSKDK 307 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 + + + GE ++A++ ++ L L +G + Sbjct: 308 CIEFLAGRLVVGEQ--MDSAKAKYDRLMSHLSTRLLPHIG-----------VTPEFHLDK 354 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR----VGLVRVERAVKE 477 I + L+ G+ DD DH G +R++ G + ++FR + L R+ R + + Sbjct: 355 AFFIGYMTNLLLQTVVGRRSPDDRDHWGGKRLQLTGSLLADKFRFEYELFLRRLARKLHD 414 Query: 478 RLSLGDLDT-----------------------------------LMPQDMINAKPISAAV 502 S+ + L + IS + Sbjct: 415 TGSILKVKEDISMVSPNIEGSSFIPQSKYDTHGKVPGLEDPRRLLDRIKVAATSYISKNI 474 Query: 503 KEFFGSS-------------QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 + +SQ + + + S ++ RR S+ + R Sbjct: 475 TSALSTGTWKTNEVVGNTKSGVSQSLVRLSYTSALSQIRRSSS----SVEETSKAIGPRL 530 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN-EYGFLETPYRKVTDGVVTDEIHYLSA 608 +H T +G +CP ETPEG +GLI + S+ A + E RK+ H + Sbjct: 531 LHTTQFGYMCPAETPEGAKVGLIKNFSLMANVTLDNPKDEHDLRKLLTEYRVQASHGPIS 590 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 + + + + A + + F+ E + + V S + Sbjct: 591 VLKSFHTVTNAKKLVSDVKIFLNGSWLGFIDREYVQRLITDLKRWRFEGKINREVSISYL 650 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGT----------GMERAVAVDSGVTAVA 718 + ++ R P + T E V + + + Sbjct: 651 -----AHKQEISISSDEGRVTRPVFVVITDIHPTLKLVTNLSLAITEEDVETLATIPQME 705 Query: 719 KRGGVVQYVDASRIVIKV-NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 + ++ + + +I+ + +E +DIY+ + Q + Sbjct: 706 QWNSLLSGLGTGKCMIEFLDPNEEEMALICMDIYHFKEE---------IQKAHTIRDIIL 756 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 G+ A + L N + S+++S T++ Sbjct: 757 AHGEDNAINYIKAHN-IPLANN-------YTHLEIHPSMVLS-------AITSLIPFPDH 801 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG-KVTPKGETQLT 896 S + L + D SGI LV + P + + Sbjct: 802 NQSPRNLYQASMGKQAVGIYALNYLKRFDTSGI---NVMHYPQLPLVTTRSMPHVKFRYL 858 Query: 897 P-EEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 P + ++ AI + +DS + + V G + T + + + +++ Sbjct: 859 PAGQNVIIAIAVYSGFNQEDSLIMSQSAVDRGFMRATYYHTYEEMISSAASSINAPDRIE 918 Query: 955 QAKKDLSEELQILEA---------GLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + + + ++ ++ R+ + + + K+ R T + Sbjct: 919 KFCRPIGPNIKGIKDPGCASYLEADGLPRVGNAVNSQRLIIGKIRPNKRSMNSRAVSTYD 978 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK---IVKVYLAVKRRIQP 1062 + L+ E+ + ++ +++G D + + KV + R Q Sbjct: 979 FQDVSLKVKMEETGRVDSVIIAPDLREQSFLSEGVDSNTTGAEGSLLAKVRVRSSRVPQL 1038 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + RHG KG + + ED+P+ +G DI++NP +P + Sbjct: 1039 GDKFSSRHGQKGTVGMLLRHEDLPFTLDGITPDIIMNPHAIP---------------SRM 1083 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 IG + ++ ++ L+ + G Sbjct: 1084 TIGQLMESV----------------------------------ASKLGALSGHEVDGTAF 1109 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 P G+ + +I L + +G TGE + +G + +L H+V DK Sbjct: 1110 NAPP--GSTDKQIAADLHARGYQKHNYEAMMNGMTGEMMTYRIFIGPTFYQRLKHMVLDK 1167 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------ 1296 + +R+TG +T+QP G++ +GG R GEME A A+GA L++ L SD Sbjct: 1168 ISSRNTGPIVTLTRQPNEGRSNYGGMRIGEMEKDAFIAHGATAILRDRLLFSSDVSEFLV 1227 Query: 1297 ------------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 + + + +P + + +EI +G+ Sbjct: 1228 CQNCGIICWHADSRKLTTKKSPHCMICSESSTTDSFARITIPYAAKLFFQEIIGMGVFPR 1287 Query: 1339 LEDE 1342 +E E Sbjct: 1288 IEVE 1291 >UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomonas moewusii RepID=B2X2B8_CHLMO Length = 795 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 213/808 (26%), Positives = 351/808 (43%), Gaps = 106/808 (13%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRL 75 V +P L IQ SF +E+ GL F PI S + E+ + Y+L Sbjct: 2 LNSVYYLPDFLEIQRQSFFTLLEK------GLIDEFSKRNPITSKKKDVEVYFYPEYYKL 55 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 P + ++ +R +Y++ L + +++ + I+ + Y+G +PLMT G Sbjct: 56 TLPTYSPRQAILRCKSYTSKLYMPVQITFKK-------TNTIRLKWAYIGNLPLMTKRGH 108 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDK--------GKTHSSGKVLYNARIIPYRGSWLDFE 187 F++NG R+IV+Q+ RSPG+++ + Y A +I RG+WL E Sbjct: 109 FILNGAPRIIVNQIIRSPGIYYQEKLYERFTDKLSDKPNVTYKRYYADLICLRGTWLRLE 168 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFF---------------------- 225 D +++ + + K+P L + + IL+ Sbjct: 169 IDRDKDIWAQTKKGPKIPIYWYLIGMGLSEHIILNSILEPQRILQNLAPFTLDRKSTRKK 228 Query: 226 -EKVIFEIRDNKLQMELVPERLRG----ETASFDIEANGKVYVEKG--------RRITAR 272 + E+ E R ET++ + KG RR Sbjct: 229 RNDYSYVKNPPDAWKEIYLELSRSPKSVETSTSATTSKDNSLYSKGSTTKDESPRRTNKV 288 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE---------------------STGELIC 311 R K ++ K + +++ +L Sbjct: 289 DARNALTSKKKSLQKEASEQGRKWLFNKFMNPRAYDLSRQGRAAFNRKLGLKIDENQLTL 348 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDH----GPYISETL-----RVDPTNDRLSA 362 A LS + G K I+ + G I + R++ T Sbjct: 349 TAQDLLSATDYLIKVEKGLKPIDDIDHLKNRRVRTSGELIQIQIGIAVVRLEKTIREKIN 408 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS---------LLREE 413 E+ G+ P S F+ ++ L + + ++ ++ Sbjct: 409 KTEMQFSFSLGDAPRTSRISSNFKKDSSTQKLKQLRSSTGLINDQIAPITTDITNFPTKQ 468 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG---EMAENQFRVGLVR 470 ++D + ++ N + + +L I S G +N R + Sbjct: 469 PIEFQTKNEDSTYVEFSRPVNPENSNIKSNSEKNL----ISSSGMVTTTTKNNTRASTKK 524 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 + + L TL ++IN K ++A++EFFG+S LSQFMDQ NPL+EITHKRR+ Sbjct: 525 TKPLLFGNLQKNQTKTLNISNLINNKSFNSALREFFGTSPLSQFMDQINPLAEITHKRRL 584 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 S++GPGG+TR+ A E+R +HPTHYGR+CP+ETPEG N GL+NSL+ Y++ N G LE+P Sbjct: 585 SSMGPGGVTRDTATLEIRGIHPTHYGRICPVETPEGKNTGLVNSLTNYSRVNSLGILESP 644 Query: 591 YRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 + +V G+V + YLSA +E + A+ + + + R + + R+ Sbjct: 645 FYRVYKGMVQKNLGLFYLSAEQEEKTKLGAADLFVSSIDFLENNNIPVRIGEKFTKIHRN 704 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 V+Y+ VS Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP +R ++P+VGTG+E Sbjct: 705 LVEYVGVSPTQMISIATSLIPFLEHDDANRALMGSNMQRQAVPVIRPERPIVGTGLESRA 764 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKV 736 DSG ++ GV+ YV + +I+++ Sbjct: 765 VSDSGHVIQSRFSGVITYVSSDKIIVRT 792 >UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742EB4 Length = 487 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 215/484 (44%), Positives = 316/484 (65%), Gaps = 5/484 (1%) Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L+ E + E + + + +++ I + G V +D +DE Sbjct: 5 LKAVDFFHTNEEIMNEFFELKEVELSEFYSKYKDTELEEIL--RSRLEGSFVREDVLDEE 62 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 TGE + A + + ++ K+ + +++ D I+ L D T + A++E Sbjct: 63 TGEFVAEAEEIIDIPVIQKIIDAKVEKLSIWEVKPEDR--IIANALVHDSTKNSDEAVIE 120 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 ++R +RPG+ T ++A SL + +FF+ RYDL+ VGR K N+ L + +L+K+D+ Sbjct: 121 VFRKLRPGDLVTVDSARSLVKQMFFNPQRYDLADVGRYKVNKRLKLDVPADVIVLTKEDV 180 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 + ++ + ++ +G+G DDID+L NRR+R VGE+ Q + G++++ + V+E++++ D+ Sbjct: 181 LQTIEYVKNLVSGEGFTDDIDNLSNRRVRGVGELLSIQIKGGMLKMSKMVREKMTIQDIT 240 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 TL PQ ++N KP++A + EFFGS QLSQFMDQ+NPLSE+THKRRISALGPGGL+R+RAGF Sbjct: 241 TLTPQSLLNTKPLNALILEFFGSGQLSQFMDQSNPLSELTHKRRISALGPGGLSRDRAGF 300 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT-DEIH 604 EVRDVH +HYGR+CPIETPEGPNIGLI SLS Y + N+YGF+ETP+ K+ DG ++I Sbjct: 301 EVRDVHNSHYGRICPIETPEGPNIGLIASLSTYGKVNKYGFIETPFVKINDGKADFNDIR 360 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 YL+A EE IAQA++ +D++G+F+ D V CR E + +VD +DVS +Q+VSV Sbjct: 361 YLAADEEEGLFIAQADTPIDKDGNFLTDEVVCRYGDEIVHIDKSKVDILDVSPKQLVSVS 420 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 A LIPFLEHDDANRALMG+NMQRQAVP L+ + P VGTG+ER VAVDSG +K G V Sbjct: 421 AGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPYVGTGLERKVAVDSGAVITSKASGTV 480 Query: 725 QYVD 728 + Sbjct: 481 PLLH 484 >UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO2_MIMIV Length = 1196 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 193/1242 (15%), Positives = 380/1242 (30%), Gaps = 213/1242 (17%) Query: 154 GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR----KLPATII 209 + + D + S Y A + +D + + + + K+P ++ Sbjct: 93 NLLYPLDAIRKQISYSAKYTATVT-QWQDIVDIDTKKTETRIIGSPEKDVPIAKIPIMVL 151 Query: 210 LRALNYTTEQILD---LFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 + N T + ++ + I + ++ L E + I V+ ++ Sbjct: 152 SKYCNLTLRPDIAGKHCKYDAGGYFIVNGSEKVVLSVESM--------IPRKPVVFTQRD 203 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 + ++R + +P G + +I + + + + Sbjct: 204 QNSLLYYVR--------VQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIR 255 Query: 327 QSGHKRIETLFTNDLD--------HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 G + E + + LD + I P+ + AL + ++ + T Sbjct: 256 ALGIETDEDIVDSILDVKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFTD 315 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSL-LREEIEGSGILSKDDIIDVMKKLIDIRN 437 E E RY + + + E I I ++ KL+ Sbjct: 316 TNPEVKAEQR----RRYLDKIMTQFVLPHITSGTGDPEIDKIYKAHYICYMIHKLLKCYL 371 Query: 438 -------GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 DD D + N+RI G + F+ ++ + ++D P Sbjct: 372 RGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPP 431 Query: 491 DMI---NAKPISAAVKEFFGSSQ--------LSQFMDQNNPLSEITHKRRISALGPGGLT 539 ++I I +++ + LSQ +++ N L +++ RR+ + P Sbjct: 432 NIIPHIKPNSIEQGLRQALSTGNFGSQSRKGLSQMLNRMNHLHSLSYMRRV--ITPTVDA 489 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEG-PNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 R +H T YG +CP+E+PEG P GL+ ++++ + P + Sbjct: 490 STMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAMMEGITINMNSQIPIIESYLIG 549 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 + + YV N N DL R +GE S ++Y Sbjct: 550 KITTLESANKKRLHQYVKVFLNGNWLGVTRNIIKIHNDLRAMRFRGELSRMVGLVLNY-K 608 Query: 655 VSTQQVVSVGASLI-PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 + + + G LI P+L D N + + + + + + + E VD Sbjct: 609 TAEFHIYTDGGRLIRPYLTVTDNK-----LNFKPEMLDEVNSWEEFLAKFPEVIEYVDKE 663 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ---NTCINQMPC 770 QY+ + ++ L K R+N+ N + Sbjct: 664 EEQNIMLAVFPQYIQDANRIMSKKPINSRDQ--------LNKINRTNRYDDNVYVRYTH- 714 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 + + G + ++ P D + G YN + + Sbjct: 715 CEIHPCMILGLISSNIPFPDHNQSPRGI---------FQYNQ--------ARQAMGLYIS 757 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + + +T+ + E+ IV I + Sbjct: 758 DYRERTDISYILYHPQIPLVTSRASKYTGTHIFPAGENSIVAIASY-------------- 803 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 + ++ S V + S + + + + + Sbjct: 804 ------------TGLMNQEDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSIFMK 851 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 + L ++++ V+ G V ++ P R ++EKQ + Sbjct: 852 PDRNKVDNLRDANYDKLSEEGYAKVETVIRDGDVVIGVVNPKPTAR-------EDEKQYK 904 Query: 1011 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 + + ++ I+K+ + +R GDK + R Sbjct: 905 DASSIYKSLIPGAVDKVIT-----------EVNNDGYPIIKMRIRSERIPNVGDKFSSRA 953 Query: 1071 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 1130 G KG I DM + ++G DI++NP +P RM IG I Sbjct: 954 GQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIG---------------QLIEC 998 Query: 1131 MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 +L + V KG+ F Sbjct: 999 LLGKLCAV---------------------------------------KGVYGDATPFTSV 1019 Query: 1191 KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 I + L G +Y+G G++ + +G Y +L +V DK H+R+ G Sbjct: 1020 DLNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSRARGP 1079 Query: 1251 YSLVTQQPLGGKAQFGGQRFG-EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK------ 1303 L+T+Q G+++ GG R G EME AL A+G A L+E SD Sbjct: 1080 TQLLTRQAPEGRSRDGGLRIGFEMERDALCAHGVAQFLKEKTVDNSDIYTCHVCDSCGQF 1139 Query: 1304 ----------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 + + +P +F +LL+E+ S+ I Sbjct: 1140 AHKVPEKKYYTCTGCRNTTSISKIVIPYAFKLLLQELASINI 1181 Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 50/315 (15%), Positives = 107/315 (33%), Gaps = 56/315 (17%) Query: 27 LLSIQLDSFQKFIEQDPEGQ-YGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQE- 84 L+ +DSF +FIE+ G + ++ L + + P + +E Sbjct: 35 LVKHHIDSFNQFIEEIIPNILQGGDNVISE-KATENKIIRYRLTFNDLGIKPPTLENEEN 93 Query: 85 ------CQIRGVTYSAPLRVKLR----LVIYEREAPEGTVKDIKEQEVYMGEIPLMT--- 131 + ++YSA + +V + + E + E++V + +IP+M Sbjct: 94 LLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPEKDVPIAKIPIMVLSK 153 Query: 132 ------------------DNGTFVINGTERVIV---SQLHRSPGVFFDSDKGKTHSSGKV 170 G F++NG+E+V++ S + R P VF D+ Sbjct: 154 YCNLTLRPDIAGKHCKYDAGGYFIVNGSEKVVLSVESMIPRKPVVFTQRDQNSL------ 207 Query: 171 LYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILD 222 LY R+ S + +++ + I +++ +RAL T E I+D Sbjct: 208 LYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIRALGIETDEDIVD 267 Query: 223 LFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDV 282 + ++ K + L+ + + + + T + Sbjct: 268 SILD-----VKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFTDTNPEVKA 322 Query: 283 KLIEVPVEYIAGKVV 297 + ++ I + V Sbjct: 323 EQRRRYLDKIMTQFV 337 >UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AT93_BABBO Length = 1283 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 159/1041 (15%), Positives = 326/1041 (31%), Gaps = 194/1041 (18%) Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 G +L + + + ++ + KKLI + G+ + ++ D + + Sbjct: 330 YEECGAYFLRHYVLLQAKTNAE--KFETLLYMFKKLIKVSRGEIQTENYDSFAFQELLLP 387 Query: 457 GEMAENQFRVGL---------------VRVERAVKERLSLGDLDTLMPQDMIN------- 494 G++ + L + + + + + L+ D+ + Sbjct: 388 GQIYSCILKESLYVALLKIRSIYHAELLELCKNISGDATRHSKRRLIDVDLQSHEQKELL 447 Query: 495 -----------------AKPISAAVKEFFGSSQ-------------LSQFMDQNNPLSEI 524 A I + F + L+ ++ N + Sbjct: 448 EKLLEKPELFSYAVEKVASDIPKKLHSFLATGNATNMHFELTQSSGLTVVAERINYHRFM 507 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 +H R +L G L + EVR + +G +CP+ TP+G GL+ L+ YA Sbjct: 508 SHFR---SLHRGSLFAKMRSTEVRKLLGETWGFICPVHTPDGAPCGLLLHLAQYAVPVTA 564 Query: 585 GFLETPYRKVT--------------DGVVTDEIHYLSAIEEGNYVIAQA----NSNLDEE 626 E V VTD + + + + +VI ++E Sbjct: 565 TDCEGAAEAVKSLLRTHGYSVDFTGHETVTDFVTHDAQHIKRIHVIVDGVPMCTLPINEA 624 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 +++ + G+ L ++ V++ V S+ ++ Sbjct: 625 PKLYDEIKLAKRYGKFGLKEHYEI----VASPDVKGEYTSI------------MILTYPG 668 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 R P + + +G + + + + + ++ E Sbjct: 669 RVIRPVIC-----LTSGEIEWIGPITQLWSTI--------AVSEEEARISHQMVASNAEG 715 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPV-ERGDVLADGPSTDLGELALGQNMRVAFM 805 ++ + + ++ P + + V + D + PS L + A Sbjct: 716 KCKTLSIDEALMHDNSSDHAVSPVKKVIDNVPVKYDYMEVSPSAILS-------VTAALT 768 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 P++ +N + +++++ H ++ + +L Sbjct: 769 PFSNHNQSPRNMYQCQMLKQSMGVPYHCEQFRSDVKAYRL-------------------- 808 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 + LV T + + A+ A D Sbjct: 809 -----------LFPQKPLVT-TTEFRQMNYEDYPTGMNAVVAVIAHTGFD-------MED 849 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 +I+ R ++ + + ++ L S+I A L G+ Sbjct: 850 AMIINKSSLDRGAFHGCIYKSKVIDAMPANGRSRGNQHYFANTNHLGSKIIASLDKDGLP 909 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQ-LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 + ++ ++ + E+Y + ++ + + Sbjct: 910 NVGARVKKGTPICRIESHEKVGGSKQISDRVEKYHDEDAIVDQVTIIGCNDASVAEMPNA 969 Query: 1045 GVLK--IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 +K + + R GDK A RHG KG++S P E+MP+ E+G DI+ NP G Sbjct: 970 SNIKGTRATIKFRIVRNPIVGDKFASRHGQKGILSMAWPAENMPFLESGIIPDIIFNPHG 1029 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA--KLREFIQRAYDLGADVRQKVD 1160 +PSRM IG+++E G +A G +A ++ ++I G + R Sbjct: 1030 LPSRMTIGKLIECMAGKSAAIHGAFQDATCFRKYPKQMATGNKWIDHGGLKGWEERGFRY 1089 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 +S + + + L G +Y G G + Sbjct: 1090 MSKEEELSKT-----------------EDDVIDYFGKTLLQAGYDYYGTESMYCGSLGTE 1132 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + +G ++ +L H+V DK R+TG +T+QP+ G+ GG RFGEME +L A Sbjct: 1133 IRTHIFIGCIFYQRLRHMVSDKAQVRATGPVDAITKQPVKGRKNRGGIRFGEMERDSLIA 1192 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG---------------------M 1319 +GA+ LQ+ L SD + G + Sbjct: 1193 HGASALLQDRLIHCSDAHTAYVCPNCGSIISATVTSVGATNKRSVSHCRICKVACKLVTI 1252 Query: 1320 PESFNVLLKEIRSLGINIELE 1340 P + E+ S+ + I L Sbjct: 1253 PYVLRYVAHELASINVGIRLH 1273 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 151/1111 (13%), Positives = 314/1111 (28%), Gaps = 230/1111 (20%) Query: 28 LSIQLDSFQKFIEQDPEGQYG-------------LEAAFRSVFP-----------IQSYS 63 + +DSF FI+ L+ S I + Sbjct: 11 IHAHIDSFNAFIDHYSTRMVRRIPPVYISADSDHLKHLLNSKEKPHCKLTAVYHNITNLD 70 Query: 64 GNSELQYVSYRLGEPVFD------------VQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 + +S R+G P + +I TY + L VK L I Sbjct: 71 VQVSV--LSLRIGNPTRPGSECLGSDNRMFPRHAKIAHTTYESSLIVKFGLKI------- 121 Query: 112 GTVKDIKEQEVYMGEIPLMT------------------------DNGTFVINGTERVIVS 147 + +E+ +G IP+M G FV+ G ER++ Sbjct: 122 PGTSKVLTKELTVGYIPIMVKSKRCNLDGISPEEMVEQGEDIDEPGGYFVVRGNERIVRQ 181 Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR------ 201 + + + K + + VL+ I R D + L++ +++R Sbjct: 182 LIVLRSN-YPLAIKSGNNRTKHVLFTDYSIMMRSQCHDDGCSVNNVLYLTVNKRCMFRTI 240 Query: 202 -----RKLPATIILRALN--YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + +P ++LRA + E++ + + + + + E D Sbjct: 241 VKGSVQLIPFGVLLRATMPLMSDEELKQKLLQDTLGDEALTVYYQRFFLDLVEREPDICD 300 Query: 255 IE-ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 I+ + G ++ + L E ++ V+ + + E + Sbjct: 301 IDLKENRHLYRLGSACWSQVNQYL-HPGATYEECGAYFLRHYVLLQAKTNAEKFETLLYM 359 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 KL + I+T + + +IY + Sbjct: 360 --------FKKLIKVSRGEIQTENYDSFAFQELLLP--------------GQIYSCILKE 397 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 + E ++S R L+ +++ + + +L Sbjct: 398 SLYVALLKIRSIYHAELLELCKNISGDATRHSKRRLIDVDLQSHEQKELLEKLLEKPELF 457 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI 493 K D + + + L+ G+ T M ++ Sbjct: 458 SYAVEKVASD---------------------------IPKKLHSFLATGNA-TNMHFELT 489 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 + ++ + +FM L + ++ + L E GF + P Sbjct: 490 QSSGLTVVAERI----NYHRFMSHFRSLHRGSLFAKMRSTEVRKLLGETWGF----ICPV 541 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT--------------DGVV 599 H TP+G GL+ L+ YA E V V Sbjct: 542 H--------TPDGAPCGLLLHLAQYAVPVTATDCEGAAEAVKSLLRTHGYSVDFTGHETV 593 Query: 600 TDEIHYLSAIEEGNYVIAQA----NSNLDEEGHFVEDLVTCRSKGESS------LFSRDQ 649 TD + + + + +VI ++E +++ + G+ + + Sbjct: 594 TDFVTHDAQHIKRIHVIVDGVPMCTLPINEAPKLYDEIKLAKRYGKFGLKEHYEIVASPD 653 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK-----PLVGTGM 704 V S + G + P + +G Q + + ++ +V + Sbjct: 654 VKGEYTSIMILTYPGRVIRPVICLTSGEIEWIGPITQLWSTIAVSEEEARISHQMVASNA 713 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDA-----SRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 E S A+ V + +K + E+ P LT ++ Sbjct: 714 EGKCKTLSIDEALMHDNSSDHAVSPVKKVIDNVPVKYDYMEVSPSAILSVTAALTPFSNH 773 Query: 760 NQ---NTCINQMPCVSLGEPVERGDVLADGPS------------------TDLGELALGQ 798 NQ N QM S+G P +D + + + G Sbjct: 774 NQSPRNMYQCQMLKQSMGVPYHCEQFRSDVKAYRLLFPQKPLVTTTEFRQMNYEDYPTGM 833 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV---SRDTKLGPEEITADIP 855 N VA + G++ ED++++++ + F + + G + A+ Sbjct: 834 NAVVAVIAHTGFDMEDAMIINKSSLDRGAFHGCIYKSKVIDAMPANGRSRGNQHYFANTN 893 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 ++G ++ LD+ G+ +GA V G + R EK K Sbjct: 894 HLGSKIIASLDKDGLPNVGARVKKGTPIC------------------RIESHEKVGGSKQ 935 Query: 916 SSLRV--PNGVSGTVIDVQVFTRDGVEKDKRALE-IEEMQLKQAKKDLSEELQILEAGLF 972 S RV + V V + + + + K + + + Sbjct: 936 ISDRVEKYHDEDAIVDQVTIIGCNDASVAEMPNASNIKGTRATIKFRIVRNPIVGDKFAS 995 Query: 973 SRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + +++ AE + L ++ Sbjct: 996 RHGQKGILSMAWPAENMPFLESGIIPDIIFN 1026 >UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain (Partial sequence n terminus) protein (Fragment) n=1 Tax=Ralstonia solanacearum RepID=B5RWZ2_RALSO Length = 587 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 253/439 (57%), Positives = 329/439 (74%), Gaps = 6/439 (1%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR V VP+LL+ Q+ S+ +F+++ GL+AAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHVSVAQRKTEGLQAAFNAI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + +++VSY L P FDV+ECQ RG+T+ + LR K+RL+I +RE P VK+ Sbjct: 61 FPIVSHNGLARMEFVSYHLSHPPFDVKECQQRGLTFHSALRAKVRLIINDRENPTK-VKE 119 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKEQEVYMGEIPLMT G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 120 IKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 179 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDF+FDPKD L+ R+DRRRK+P TI+L+++ T EQIL FF F ++ + Sbjct: 180 IPYRGSWLDFQFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKSDG 239 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ME VPERLRGE A FDI + NGKV +EK +RI A+HIR L+ KLI VP +Y+ G+ Sbjct: 240 ALMEFVPERLRGEVARFDISDKNGKVVIEKDKRINAKHIRDLDAAGTKLISVPEDYLLGR 299 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 V+AK+ +D TGE++ AN EL+ +L KL +G K I+TL+TNDLD GPY+S+TLR D Sbjct: 300 VLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKDIQTLYTNDLDQGPYMSQTLRTDD 359 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T D+ +A + IYRMMRPGEPPT +A E+LF+ LF++ED YDLS VGRMK N L R E Sbjct: 360 TVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDSYDLSRVGRMKVNSRLNRSEGT 419 Query: 416 GSGILSKDDIIDVMKKLID 434 G +L+ DDI+D +K L++ Sbjct: 420 GPMVLTDDDILDTIKLLVN 438 >UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=Archaea RepID=RPOB_SULAC Length = 1126 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 168/956 (17%), Positives = 328/956 (34%), Gaps = 137/956 (14%) Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE-TASFDIEANG 259 R P LR L Y++ L + + E ++ + +P L+ + ++ + Sbjct: 76 REITPMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKSVADPTSNLPIDK 135 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE-----LICAAN 314 + + + + + + + + + E +A V DY + + +A Sbjct: 136 LIEIGEDPKDPGGYF---IVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAA 192 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV---EIYRMMR 371 ++ +L S +I I L D + A+ +I + Sbjct: 193 GYRVQVMIERLKDSTI-QISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQNELL 251 Query: 372 PG-----EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EIEGSGILSKD 423 P + E A N + + + Sbjct: 252 PSLEQASSITSAEEALDFIGNRVAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGY 311 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + + K++++ G+ E DD DH N+R+R G++ + FRV + + +L Sbjct: 312 YLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSK 371 Query: 484 LD--TLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALG 534 + L ++ A I+ ++ + SQ +D+ N LS ++H RR+ + Sbjct: 372 VRGRRLSLTALVRADIITERIRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVVS-- 429 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 L R + FE RD+H T +GR+CP ETPEGPN GL+ +L++ AQ + G E+ +V Sbjct: 430 --SLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSV-GINESVVERV 486 Query: 595 TDGVVT----DEIHYLSAIEEGN---------YVIAQANSNLDEEGHFVEDLVTCRSKGE 641 + D I +S E Y+ + ++ + + R +G+ Sbjct: 487 AYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAKKIRESRRQGK 546 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK--PL 699 D+V+ ++T + N + + R P + + PL Sbjct: 547 L----SDEVNVAYIATDYL----------------NEVHINCDAGRVRRPLIIVNNGTPL 586 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASR---IVIKVNEDEMYPGEAGIDI------ 750 V T + + + G ++++DA + +N ++ P ++I Sbjct: 587 VDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQDLTPDHTHLEIWPSAIL 646 Query: 751 ------YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS---------------- 788 ++ +S +NT + M SLG + D + Sbjct: 647 GIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRML 706 Query: 789 --TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 + G N +A M + GYN EDSI++++ ++ + + + + G Sbjct: 707 GVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGG 766 Query: 847 PEEITADIPN------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 E+ P G+ L+++G+V EV GGD+L+GKV+P Q E Sbjct: 767 QED-KIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKEL- 824 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 +D+S+ +G +G V V + K + Sbjct: 825 -------SPEQAKRDTSIVTRHGENGIVDLVLITETLEGNKLVKV--------------R 863 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 +L+I E G + GV +D++ + + D + Sbjct: 864 VRDLRIPEIG--DKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQ 921 Query: 1021 LKHEFEKKLEAKRRKITQGDDL--APGVLKIVKVYLAVKRRIQPGD-KMAGRHGNK 1073 + K A K P + ++ K L + + GR G K Sbjct: 922 IMEAIGGKYAALSGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQK 977 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 105/460 (22%), Positives = 173/460 (37%), Gaps = 86/460 (18%) Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR----ALEIEEMQLKQ 955 + AI +++DS + + + + F E+ K +I + Sbjct: 719 NAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGGQEDKIVTPEAGV 778 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 + ++LE + G V K+ + + ++ K + + Sbjct: 779 KGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAK--RDTSIV 836 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 ++ E + K+VKV + R + GDK A RHG KGV Sbjct: 837 TRHGENGIVDLVLI-----------TETLEGNKLVKVRVRDLRIPEIGDKFATRHGQKGV 885 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 + + DMPY G DI+LNP +PSRM IGQI+E IG K A+ + Sbjct: 886 VGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEA--------IGGKYAALSGKP 937 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 + ATP + K E+ Sbjct: 938 VD---------------------------------------------ATPFLETPKLQEM 952 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 ++ + +YDGRTG++ + + G +Y KL+H+V DKMHAR+ G ++T Sbjct: 953 QKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILT 1012 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD-------DVNGRTKMYKNI 1308 +QP G+A+ GG RFGEME L +G A +++ L SD D G Y Sbjct: 1013 RQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRS 1072 Query: 1309 VDGNHQM---------EPGMPESFNVLLKEIRSLGINIEL 1339 + + +F +L++E+ S+ I+ L Sbjct: 1073 KNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRL 1112 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 103/304 (33%), Gaps = 56/304 (18%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + L+ LDSF F+ L+ I + +++ R Sbjct: 8 WAIAESFFKTRGLVRQHLDSFNDFLRNK------LQQVIYEQGEIVTEVPGLKIKLGKIR 61 Query: 75 LGEPVF-----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +P E ++R +TYS+P+ L ++ E + E+Y Sbjct: 62 YEKPSIRETDKGPMREITPMEARLRNLTYSSPIF--LSMIPVENNIEGEPI------EIY 113 Query: 124 MGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDS 159 +G++P+M G F++NG+E+VI++Q + Sbjct: 114 IGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLV- 172 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR---KLPATIILRALNYT 216 D GK+ S+ + G + + + ++I ++P II+RAL + Sbjct: 173 DYGKSGSNITHVAKVTS-SAAGYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFV 231 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 T++ D+ + + N+L L +V + + R + Q Sbjct: 232 TDR--DIVYAVSLDPQIQNELLPSLEQASSITSAEEALDFIGNRVAIGQKRENRIQKAEQ 289 Query: 277 LEKD 280 + Sbjct: 290 VIDK 293 >UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=Firmicutes RepID=D0V9L6_9BACI Length = 481 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 181/529 (34%), Positives = 280/529 (52%), Gaps = 68/529 (12%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 10 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V+E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 64 LEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F GK +GK + A +IP RG+WL++E Sbjct: 117 PIMTDTGTFIINGAERVIVSQLVRSPSVYFS---GKVDKNGKKGFTATVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKV--------IFEIRDNKLQ 238 D KD ++VRIDR RKLP T++LRAL + + ++ILDL E +K Sbjct: 174 TDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLRNTLDKDNTENSDKAL 233 Query: 239 MELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 +E+ GE + + + + + R A R + + + Sbjct: 234 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKL----HIKNRLFNQR 289 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ +D TGE++ L L K L++G + Sbjct: 290 LAETLVDPETGEILAEKGQILDRRTLDK------------VLPYLENGIGFRKLYPNGGV 337 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 +++ ++ P + + N E Sbjct: 338 V-EDEVMLQSIKIYAPTDAEGEQT------------------------INVIGNAYIEEA 372 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 ++ DII + ++ +G G+ DDIDHLGNRR+RSV E+ +NQFR+GL R+ER V+ Sbjct: 373 IKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVCELLQNQFRIGLSRMERVVR 432 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 ER+S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+T Sbjct: 433 ERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 481 >UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4530 Tax=cellular organisms RepID=RPB2_YEAST Length = 1224 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 167/1079 (15%), Positives = 329/1079 (30%), Gaps = 191/1079 (17%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY------GLEAAFRSVFPIQSYSGNSE 67 + L+S QLDSF +F++ + LE + + S E Sbjct: 30 SWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYE 89 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + + V +G + QE + + Sbjct: 90 ISFG-----------------------KIYV----TKPMVNESDGVTHALYPQEARLRNL 122 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 T + ++ +R + PG + S I L Sbjct: 123 ---TYSSGLFVDVKKRTYEAIDV--PGRELKYELIAEESEDDSESGKVFI----GRLPIM 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 K+ + A ++ + F+ + I + ++ + ER Sbjct: 174 LRSKNCY--------------LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSA 219 Query: 248 GETASFDIEANGKVY--VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 G +A V + R + R + VKL YI + Sbjct: 220 GNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQD 279 Query: 306 TGELIC--AANMELSLDLLAKL-SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 +I A + ++L + ++ + ++ G I DR +A Sbjct: 280 IPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVI---------QDRETA 330 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L I R E + + L + ++ EG Sbjct: 331 LDFIGRR----GTALGIKKEKRIQYAKDILQKEFLPHITQL-----------EGFESRKA 375 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + ++ +L+ + + DD DH G +R+ G + F+ ++ + + + Sbjct: 376 FFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRT 435 Query: 483 DLD--TLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHK 527 + + INAK I++ +K + SQ +++ S ++H Sbjct: 436 VEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHL 495 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RR + + R+ + R +H TH+G VCP ETPEG GL+ +LS+ + + G Sbjct: 496 RRTNT----PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISV-GTD 550 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN----SNLDEEGHFVEDLVTCRSKGESS 643 P + + + + N +E L T R KG+ + Sbjct: 551 PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDIN 610 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 + + ++ + + L + + +L + + + + Sbjct: 611 -PEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESL-----GHKELKVRKGHIAKLMAT 664 Query: 704 MERAV-----AVDSGVTAVAKRGGVVQYVDASRIV------------------------- 733 + + V+ + G+V+Y+DA Sbjct: 665 EYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVD 724 Query: 734 -----------IKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 E++P I + +S +NT + M ++G + Sbjct: 725 PAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTN 784 Query: 780 GDVLADGPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 +V D + EL GQN VA ++GYN EDS+++++ Sbjct: 785 YNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQS 844 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN------VGEAALSKLDESGIVYIGA 875 + F ++ + + + E T + P + KLD+ G++ G Sbjct: 845 SIDRGLFRSLFFRSYMDQEKKYGMSITE-TFEKPQRTNTLRMKHGTYDKLDDDGLIAPGV 903 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 V+G D+++GK TP + EE R + +D+S + + +G V V V T Sbjct: 904 RVSGEDVIIGKTTPISPDE---EELGQRTAYHS----KRDASTPLRSTENGIVDQVLVTT 956 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 K + + K S Q G+ R + L P Sbjct: 957 NQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPH 1015 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 92/471 (19%), Positives = 168/471 (35%), Gaps = 89/471 (18%) Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 +L + + AI + +D S+ + + +F R ++++K+ Sbjct: 816 ELPAGQNAIVAIACYSGYNQED-SMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETF 874 Query: 954 KQAKKDLSEELQI-----LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 ++ ++ + ++ L+ + V K + D +EE Sbjct: 875 EKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPD--------EEELG 926 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + +++ + + +T D LK VKV + + Q GDK A Sbjct: 927 QRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD----GLKFVKVRVRTTKIPQIGDKFAS 982 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KG I EDMP+ G D+++N H + + I Sbjct: 983 RHGQKGTIGITYRREDMPFTAEGIVPDLIIN---------------PHAIPSRMTVAHLI 1027 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 +L + G F Sbjct: 1028 ECLLSKVA---------------------------------------ALSGNEGDASPFT 1048 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 I +LL+ + G +Y+G TG++ + G Y +L H+VDDK+HAR+ Sbjct: 1049 DITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARAR 1108 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM 1304 G ++T+QP+ G+++ GG RFGEME + A+GAA L+E L SD + G + Sbjct: 1109 GPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGL 1168 Query: 1305 -------------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K + + +P + +L +E+ ++ I L + Sbjct: 1169 MTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTD 1219 >UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=128 Tax=Eukaryota RepID=RPB2_HUMAN Length = 1174 Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 110/663 (16%), Positives = 226/663 (34%), Gaps = 69/663 (10%) Query: 397 LSAVGRMKFNRSLLREE-------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 ++ R+K+ + +L++E + + ++ +L+ G+ E+DD DH G Sbjct: 330 VTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYG 389 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMPQDMINAKPISAAVKEFFG 507 N+R+ G + FR + + V+ + + I + IS +K Sbjct: 390 NKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLA 449 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR+++ + R+ + R +H T Sbjct: 450 TGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS----PIGRDGKLAKPRQLHNTL 505 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G VCP ETPEG +GL+ +L++ A + G +P + + + + +S + Sbjct: 506 WGMVCPAETPEGHAVGLVKNLALMAYISV-GSQPSPILEFLEEWSMENLEEISPAAIADA 564 Query: 615 VIAQANS----NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 N + + L R + + + + + ++ + + Sbjct: 565 TKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRP 624 Query: 671 LEHDDANRALMG---ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYV 727 L + + L+ + ++ + + LV +G+ + T + Sbjct: 625 LLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQE 684 Query: 728 DASRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 E++P I + +S +NT + M ++G + V Sbjct: 685 KEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRM 744 Query: 785 DGPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 D + EL G N VA + GYN EDS++++ V Sbjct: 745 DTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRG 804 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIP------NVGEAALSKLDESGIVYIGAEVTGG 880 F ++ + EE+ + P + A KLD+ G++ G V+G Sbjct: 805 FFRSVFYRSYKEQESKKGFDQEEV-FEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGD 863 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 D+++GK E + E + +D S + +G V V V Sbjct: 864 DVIIGKTVTLPENEDELEST-------NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY 916 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 K + + K S Q G+ R + + P + Sbjct: 917 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 976 Query: 1001 GLT 1003 + Sbjct: 977 TIG 979 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 100/460 (21%), Positives = 159/460 (34%), Gaps = 71/460 (15%) Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK--DKRALEIEEMQLKQ 955 E R + S V +S N +++ R + E E + Sbjct: 765 EYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFD 824 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 ++ + + G+ I L G+ A + D + +T E +++LE Sbjct: 825 QEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTN 884 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 +Y + + L K K+ + R Q GDK A RHG KG Sbjct: 885 RRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 944 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 EDMP+ G DI++NP +PSRM I G I + + Sbjct: 945 CGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTI---------------GHLIECLQGKV 989 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 + + ATP D +I Sbjct: 990 SAN--------------------------------------KGEIGDATPFNDAVNVQKI 1011 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 LL G LY+G TG + + +G Y +L H+VDDK+H+R+ G ++ Sbjct: 1012 SNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILN 1071 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK------------ 1303 +QP+ G+++ GG RFGEME A+GAA L+E L SD Sbjct: 1072 RQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTR 1131 Query: 1304 ----MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + MP + +L +E+ S+ I + Sbjct: 1132 THTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRM 1171 >UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota RepID=C4Q1D7_SCHMA Length = 1304 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 170/1040 (16%), Positives = 326/1040 (31%), Gaps = 145/1040 (13%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 D L+ QLDSF +FI+ S+ I S ELQ Sbjct: 156 ISSYFDEKGLVRQQLDSFDEFIQ-------------TSIQKIVEDSPIIELQ-------- 194 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM----GEIPLMTDN 133 E Q G P V+ RL + + T + V M + +T Sbjct: 195 -----AEAQHSGGILETP--VQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYA 247 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 ++ +++I ++ + ++ R E Sbjct: 248 APLYVDVMKKIIRDEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPG 307 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 + I+ K I + T + +K +++ L T Sbjct: 308 GYFIINGSEK--VLIAQEKMATNTVYVFK---QKDSKYAYKTEIRSCLEHSSRPASTLWI 362 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 ++ A G K I R + L ++ + V G V +D ++ Sbjct: 363 NMMARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILE---------- 412 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM-MRP 372 + + + LD I E + AL I RP Sbjct: 413 ---------HIIYDFDDTEMREMIKPSLDDAFVIQE---------QKVALNFIGSRGARP 454 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 G T+E + + E L VG + + ++ +L Sbjct: 455 G--VTKEKRIKYAKEILQKET---LPHVG-----------VSDFCETRKAYFLGYMVHRL 498 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLSLGDLDTLMPQ 490 + + +VDD DH GN+R+ G + FR + + ++ + + + Sbjct: 499 LLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLE 558 Query: 491 DMINAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPGG 537 I ++ I+ +K + SQ +++ S ++H RR+++ Sbjct: 559 LAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNS----P 614 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 + R+ R +H T +G +CP ETPEG +GL+ +L++ A + G +P + + Sbjct: 615 IGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISV-GSQPSPILEFLEE 673 Query: 598 VVTDEIHYLSAIEEGNYVIAQANS----NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 + + ++ G N H + L R + + + + Sbjct: 674 WSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTLRKLRRQVDVIVSEVSMIRDY 733 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMG---ANMQRQAVPTLRADKPLVGTGMERAVAV 710 ++ + + L + + L+ + + + + LV +G+ + Sbjct: 734 RDQEIRIYTDAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDT 793 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG---EAGIDIYNLTKYTRSNQNTCINQ 767 T G + A E++P I + +S +NT + Sbjct: 794 LEEETV-MIAMGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 852 Query: 768 MPCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRVAFMPWNG 809 M ++G + D + EL G N VA + G Sbjct: 853 MGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTG 912 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN------VGEAALS 863 YN EDS++++E +Q F + + + EE+ + PN + A Sbjct: 913 YNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHGMDLEEV-FEKPNPQNCQGMRHAIYD 971 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 KLD+ G++ G V+G D+L+GK E + E G++ +D+S+ + Sbjct: 972 KLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEG-------GQRRYTKRDASVFMRRS 1024 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 G V V V + K + + K S Q G+ R + Sbjct: 1025 EYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCE 1084 Query: 984 VEAEKLDKLPRDRWLELGLT 1003 + P + + Sbjct: 1085 GITPDIIINPHAIPSRMTIG 1104 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 89/467 (19%), Positives = 163/467 (34%), Gaps = 79/467 (16%) Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 E R + + V ++ N +I+ R + ++ Sbjct: 890 EYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQETRHGMD 949 Query: 958 KD------LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + + Q + ++ ++ + D + + + L ++E + Sbjct: 950 LEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEGGQ 1009 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 + ++ + + + +T ++ K KV + + Q GDK A RHG Sbjct: 1010 RRYTKRDASVFMRRSEYGIVDQVMVTWNNE----GNKFCKVRVRTTKAPQVGDKFASRHG 1065 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 KG EDMP+ G DI++NP +PSRM IG ++ Sbjct: 1066 QKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLI------------------ 1107 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 E + + + ATP D Sbjct: 1108 -----------------------------------ECLQGKVSANKGEIGDATPFNDAVN 1132 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSY 1251 +I LL+ +G +Y+G TG + + +G Y +L H+VDDK+H+RS G Sbjct: 1133 VRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVDDKIHSRSRGPV 1192 Query: 1252 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK-------- 1303 ++ +QP+ G+++ GG RFGEME A+GAA L+E L SD Sbjct: 1193 QILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQVYVCNLCGLIAI 1252 Query: 1304 --------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ + +P + +L +E+ S+ I + Sbjct: 1253 AHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMMIN 1299 >UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeota RepID=B5IGJ5_9EURY Length = 1201 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 153/950 (16%), Positives = 319/950 (33%), Gaps = 131/950 (13%) Query: 204 LPATIILRALNYTTEQI---LDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 P + + + I LD + K ++E V E F I + + Sbjct: 143 FPVMVKSKICTLHEDNIDDYLDSISKDKDILNWPYKQKLEYVGEDPDDPGGYFIIGGSER 202 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV-AKDYIDESTGELICAANMEL-- 317 V V R + + + ++E + + A +++ + +I + + Sbjct: 203 VLVSLEDLAPNRVLVEKNERYNTVVETAKVFSQRRGYRALTIMEKKSDGIIVVSVPAVAG 262 Query: 318 SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 ++ L+ + G ++ + ++ + L VE ++ P T Sbjct: 263 TIPLVILMKALGLEKDQDIYRAIVSDEKMSVIALANIEE-------VENDKLYPPNGIRT 315 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EIEGSGILSKDDIIDVMKKLID 434 + A E F + + + S L + I + + +++++ Sbjct: 316 QRDAIEYLEKRFAAGQAKEYREKKISQILDSSLLPHLGTSKEDRIKKAYYLGRMARRVLE 375 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-------DLDTL 487 + G + DD DHL N+R++ G++ E FR+ + + +K +L + Sbjct: 376 LHLGLRKEDDKDHLANKRLKLSGDLLEELFRMAFEALMKDLKYQLERTYNRKKGIRIRVS 435 Query: 488 MPQDMINAKPISAAVKEFF--GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + QD++ K + A + G + +SQ +D+ + +S ++H RR+ + LTR + F Sbjct: 436 IRQDVLTQKIMHAMSTGNWVGGRTGVSQLLDRTSHMSTLSHLRRVIS----PLTRSQPHF 491 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 E RD+HPT +GR+CP ETPEG N GL+ + ++ +E G+ E K+ G+ +E Y Sbjct: 492 EARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSE-GYPEEDVLKILKGLGVEERQY 550 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD---VSTQQVVS 662 + Y+ + ++ + R KG Q++ + + S Sbjct: 551 ETGELARVYLNGNLVGYHKDGLALTNEIRSRRRKGLI----SHQINIRYDDTTNEVMINS 606 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS---------- 712 + L + + + + LV G+ + + Sbjct: 607 DKGRIRRPLLVVENGNVKYTSRHRELLRRGKMDIEDLVREGVVEWIDAEEEENAYIAVYA 666 Query: 713 -GVTAVAKRGGVVQYVD---------ASRIVIKVNED--------EMYPGEAGIDIYNL- 753 V G V + ++ ++ ++ ++I L Sbjct: 667 YDVPERCPHCGRVLGRNDVEWMNPGEGEKVTLRCKHCGAEFGVEKKITKEHTHLEIDPLL 726 Query: 754 -----------TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS-------------- 788 + S + T M SLG P D Sbjct: 727 ILGAVAGCVPYPHHNSSPRITMGAAMLKQSLGLPAANYRRRPDTRGHLLHYPQAPIVRTK 786 Query: 789 ----TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 + GQN VA + ++GYN +D+I++++ V+ + + R Sbjct: 787 TMDFVNFMRRPAGQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRYP 846 Query: 845 LGPEEITADIPN------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 G E+ +IP+ + E LDE G++ V GGD+L+GK +P + E Sbjct: 847 GGQED-KFEIPSPDVRGAMTEDRYKLLDEDGLISPEVYVKGGDVLIGKTSPPRFLEEESE 905 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 ++SS+ + G V V + + + +++++ + Sbjct: 906 LLG--------PQKRRESSVTMRPEEEGWVDSVLLTVSENNS------RLVKVKVRDQRI 951 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 + G + A++ + + +P D Sbjct: 952 PELGDKFASRHGQKGVVGAIIPQEDMPFTESGIIP----------DLIINPHAIPSRMTV 1001 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + K+ + + G + K ++ L G K G Sbjct: 1002 GHILEMIGGKVGSLEGRFVDGTVFSGEPEKALREALVKN-----GFKYNG 1046 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 148/399 (37%), Gaps = 85/399 (21%) Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 + ++L+ + G V K L +++ + + + +E Sbjct: 866 EDRYKLLDEDGLISPEVYVKGGDVLIGKTSPPRFLEEESELLGPQKR--RESSVTMRPEE 923 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 +T ++ + ++VKV + +R + GDK A RHG KGV+ I Sbjct: 924 EGWV-------DSVLLTVSENNS----RLVKVKVRDQRIPELGDKFASRHGQKGVVGAII 972 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 P EDMP+ E+G D++ + H + +G + Sbjct: 973 PQEDMPFTESGIIPDLI---------------INPHAIPSRMTVGHIL------------ 1005 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 E++ +G + VF G E ++E L Sbjct: 1006 ---------------------------EMIGGKVGSLEGRFVDGTVFSGEPEKALREALV 1038 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 +G+ +YDG TG + E + VG +Y KL+H+V K HARS G ++T+QP Sbjct: 1039 KNGFKYNGKEIMYDGITGRKIEAEIFVGVIYYQKLHHMVAGKFHARSRGPVQILTRQPTE 1098 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----------------- 1303 G+++ GG RFGEME L +GAA +++ L SD Sbjct: 1099 GRSRLGGLRFGEMERDTLIGHGAAMVIKDRLLDNSDGTVLYVCGNPECGHIAMFDRKRGI 1158 Query: 1304 -MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + + +F ++ E+ SLG+ + ++ Sbjct: 1159 LRCPVCGNTTNIYPIETSYAFKLMHDELASLGVIMRMKV 1197 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 52/430 (12%), Positives = 112/430 (26%), Gaps = 99/430 (23%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS--------------GNSELQYVS- 72 ++ + S+ I ++ + + ++ + Sbjct: 14 VNHHIASYNDLIPTPDNPNSVMQEIVDTT-KVTDEDPPGVITLDRTKTGGKTIKIVFGRN 72 Query: 73 ----------YRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 R+G P E ++R ++Y APL +K++++ E + Sbjct: 73 NDYWDVNEPTIRIGRPEIKEATGATVQITPMEARLRDLSYLAPLYLKIKVL----ECDDA 128 Query: 113 TVKDIKEQEVYMGEIPLMT----------------------------------------- 131 + + + V +G+ P+M Sbjct: 129 GCYEREPEMVKIGDFPVMVKSKICTLHEDNIDDYLDSISKDKDILNWPYKQKLEYVGEDP 188 Query: 132 --DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 G F+I G+ERV+VS +P K V+ A++ R + Sbjct: 189 DDPGGYFIIGGSERVLVSLEDLAPNRVLVE---KNERYNTVVETAKVFSQRRGYRALTIM 245 Query: 190 PKDNLFVRIDRRR----KLPATIILRALNYTTE-QILDLFFEKVIFEIRDNKLQMELVPE 244 K + + + +P I+++AL + I + E+ + Sbjct: 246 EKKSDGIIVVSVPAVAGTIPLVILMKALGLEKDQDIYRAIVSDEKMSVIALANIEEVEND 305 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 +L I +R A ++ + + I +D I + Sbjct: 306 KL---YPPNGIRTQRDAIEYLEKRFAAGQAKEYREKKISQILDSSLLPHLGTSKEDRIKK 362 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + L L + L L + E L + L Sbjct: 363 A-----YYLGRMARRVLELHLGLRKEDDKDHLANKRLKLSGDLLEELFRMAFEALMKDLK 417 Query: 365 EIYRMMRPGE 374 + Sbjct: 418 YQLERTYNRK 427 >UniRef50_P08266 DNA-directed RNA polymerase II subunit RPB2 n=26 Tax=Eukaryota RepID=RPB2_DROME Length = 1176 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 130/818 (15%), Positives = 270/818 (33%), Gaps = 85/818 (10%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDV------KLIEVPVEYIAGKVVAKDYIDE 304 F I + KV + + + T KD + + + + Sbjct: 184 GYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMAR 243 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + + +A + + +L + Q + I E + D + Sbjct: 244 GSQNIKKSAIGQRIIAILPYIKQE-IPIMIVFRALGFVADRDILEHIIYDFDD------P 296 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSED--RYDLSAVGRMKFNRSLLREE-------IE 415 E+ M++P E F R ++ R+K+ + +L++E + Sbjct: 297 EMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSD 356 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + ++ +L+ G+ E+DD DH GN+R+ G + FR + + V Sbjct: 357 FCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEV 416 Query: 476 KERLS--LGDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQNNP 520 + + + I I+ ++ + SQ +++ Sbjct: 417 RMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTF 476 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 S ++H RR+++ + R+ + R +H T +G +CP ETPEG +GL+ +L++ A Sbjct: 477 ASTLSHLRRVNS----PIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAY 532 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE----DLVTC 636 + G +P + + + + ++ + N E L Sbjct: 533 ISV-GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKL 591 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG---ANMQRQAVPTL 693 R + + + + + ++ + + L + L+ M ++ Sbjct: 592 RRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNN 651 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV-IKVNEDEMYPGEA---GID 749 + + LV +G+ + T + D E++P Sbjct: 652 YSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCAS 711 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------------------TDL 791 I + +S +NT + M ++G + V D + Sbjct: 712 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRF 771 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 EL G N VA + + GYN EDS++++ V+ F ++ + ++G +E Sbjct: 772 RELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENK-RVGDQEEN 830 Query: 852 ADIPNVGEAA------LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 + P+ G KLD+ GI+ G V+G D+++GK E + R Sbjct: 831 FEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKR-- 888 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 +D+S + N +G V V + K + + K S Q Sbjct: 889 -----FSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 G+ R + A + P + + Sbjct: 944 KGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIG 981 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 92/459 (20%), Positives = 163/459 (35%), Gaps = 79/459 (17%) Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK-RALEIEEMQLKQAKK 958 + AI + +DS + ++ + ++ F K + Q + +K Sbjct: 779 NSIVAILCYTGYNQEDSVI-----LNASAVERGFFRSVFYRSYKDSENKRVGDQEENFEK 833 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 Q + + ++ + D + + + L D+E + ++ +++ Sbjct: 834 PHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRD 893 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 + + +T + K K+ + R Q GDK A RHG KG Sbjct: 894 ASTFLRNSETGIVDQVMLTLNSE----GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 949 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 EDM + G DI++NP +PSRM IG ++ Sbjct: 950 QYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLI------------------------- 984 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 E + + + + ATP D +I Sbjct: 985 ----------------------------ECLQGKLGSNKGEIGDATPFNDAVNVQKISTF 1016 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L+ G +Y+G TG + V +G Y +L H+VDDK+H+R+ G ++ +QP Sbjct: 1017 LQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQP 1076 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--------------- 1303 + G+A+ GG RFGEME ++GAA L+E L SD Sbjct: 1077 MEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNT 1136 Query: 1304 -MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 K + + +P + +L +E+ S+ I L Sbjct: 1137 FECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175 Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 121/747 (16%), Positives = 246/747 (32%), Gaps = 116/747 (15%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPE------GQYGLEAAFRSVFPIQSYSGNSELQYV 71 D L+ QLDSF +FI+ + L+A + L++ Sbjct: 31 INAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFE 90 Query: 72 SYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 L +P E ++R +TYSAPL V + + + + Q+ Sbjct: 91 QIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT---KNVEGLDPVETQHQK 147 Query: 122 VYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPG-VF 156 ++G+IP+M G F+ING+E+V+++Q + V+ Sbjct: 148 TFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 207 Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGS---WLDF-----EFDPKDNLFVRID-----RRRK 203 S K ++ + + R + W++ + K + RI +++ Sbjct: 208 VFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQE 267 Query: 204 LPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 +P I+ RAL + IL+ ++ L E + + + G Sbjct: 268 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD-EAFVVQEQNVALNFIGARG 326 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 G R E +++ V D+ + + + LL Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLP--------HVGVSDFCETKKAYFL---GYMVHRLLL 375 Query: 323 AKLSQSGHKRIETLFTNDLDH-GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 A L + + LD GP ++ R N + + + G+ E A Sbjct: 376 ASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELA 435 Query: 382 ESLFENLFFSEDRYDL--SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 N+ RY L G K + L+ + ++++ Sbjct: 436 IKT--NIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 493 Query: 440 GEVDDIDHLGNR--RIRSVGE--------MAENQFRVGLVRVERAVKERLSLGDLDTLMP 489 G++ L N + E + +N + + V L + ++ Sbjct: 494 GKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 553 Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS-----ALGPGGLTRERAG 544 + I I A + F + +P + R++ + + R+ Sbjct: 554 LEEIAPSAI-ADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRD 610 Query: 545 FEVRDVHPTHYGRVC-PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 E+R T GR+C P+ E ++ L + + +Y +V + Sbjct: 611 REIRI--YTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYS---WQVLVASGV--V 663 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 Y+ +EE +IA + +L ++ + + + + ++ ++ V Sbjct: 664 EYIDTLEEETVMIAMSPYDLKQDK-------------DYAYCTTY--THCEIHPAMILGV 708 Query: 664 GASLIPFLEHDDANRALMGANMQRQAV 690 AS+IPF +H+ + R + M +QA+ Sbjct: 709 CASIIPFPDHNQSPRNTYQSAMGKQAM 735 >UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_CHLRE Length = 626 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 158/496 (31%), Positives = 245/496 (49%), Gaps = 73/496 (14%) Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 V G V GD+L + G +L ++ A + + +D+ L ++ ++ Sbjct: 116 VKEGDWVEVGDLLADSASSIG-GELAIGHNIIVAYMPWEGYNYEDAIL-----INERLVY 169 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVEA 986 ++T +E+ + + ++ +Q +++ + E++ L+ ++I + + G + Sbjct: 170 EDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGIAKIGSWVEEGDILV 229 Query: 987 EKLDK------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 K+ P+ + L + + L + + A+++ Sbjct: 230 GKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVININILARQKIQINTK 289 Query: 1041 DLAPGV-----------------LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 G + +YLA KR++Q GDKMAGRHGNKG++S+I P + Sbjct: 290 SKNTGKGSKPPRASKAQNTMVSQPSYIHIYLAEKRKMQVGDKMAGRHGNKGIVSRILPRQ 349 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP+ +G VDIVLNPLGVPSRMN+GQI E LG+A + +G+ + Sbjct: 350 DMPFLPDGAAVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMY------ 403 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 GAD + LS + + L D Sbjct: 404 --------GADASRSFVLSKLYEARKKTGLK-------------------------WLLD 430 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G+IRL+DGR E F++ VTVG Y+LKL H+VDDKMHARSTG YSLVTQQPL G++ Sbjct: 431 PNHPGKIRLFDGRNSECFDQTVTVGIAYVLKLVHMVDDKMHARSTGPYSLVTQQPLRGRS 490 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESF 1323 + GGQR GEMEVWA+E YGAA+ L EMLT+KSDD+ GR ++KN+++ G PESF Sbjct: 491 KQGGQRLGEMEVWAIEGYGAAFVLSEMLTIKSDDMTGRQNLWKNLIENKEIS-LGSPESF 549 Query: 1324 NVLLKEIRSLGINIEL 1339 VL+ E+++L ++I L Sbjct: 550 KVLICELQALCLDIGL 565 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 150/285 (52%), Gaps = 12/285 (4%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ P V G+ VE GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 96 YNLETYHRSNQDTCLIHKPAVKEGDWVEVGDLLADSASSIGGELAIGHNIIVAYMPWEGY 155 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T+IHI+ +++TKLG E+IT +IP++ E + LD++GI Sbjct: 156 NYEDAILINERLVYEDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGI 215 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGK+TP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 216 AKIGSWVEEGDILVGKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVIN 275 Query: 931 VQVF------------TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 + + K RA + + + Q + + + ++ Sbjct: 276 INILARQKIQINTKSKNTGKGSKPPRASKAQNTMVSQPSYIHIYLAEKRKMQVGDKMAGR 335 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 G+ + L + + D ++ Sbjct: 336 HGNKGIVSRILPRQDMPFLPDGAAVDIVLNPLGVPSRMNVGQIYE 380 >UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4MYU5_THEPA Length = 1244 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 164/1120 (14%), Positives = 361/1120 (32%), Gaps = 191/1120 (17%) Query: 5 YTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG--QYGLEAAFRSVFPIQSY 62 Y K I+ + P + + + ++S+ F+ + + R Sbjct: 25 YEPVKEIKDKWKILPCYMGMRGIARQHINSYNNFVLHEIKDIINAPSNKVLR-----TDL 79 Query: 63 SGNSELQYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 + L++V ++G+P Q C+IR TYSAP+ V + Sbjct: 80 YPSLSLEFVDIKIGKPFFTDHSKHVFKLTPQLCRIRDFTYSAPILVTIDY--------FR 131 Query: 113 TVKDIKEQEVYMGEIPLMTDNG-TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 +++ + +G IP+M + F+ + +E + H S G+ + K+ + Sbjct: 132 DYTFTRKENLEIGRIPVMLRSCICFLSSDSE---SNSDHDSSGLPEYNSSKKSMKNNFD- 187 Query: 172 YNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE 231 IP + E + F++ + + Sbjct: 188 -----IPD----------------------------------GLSKEDR-ESFYKSYMLD 207 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPV 289 + + + + + ++ VE + A + + V Sbjct: 208 ECPYDPGGYFIIKGVEKVILMQEQLSKSRIIVEMDVKKNICATVTSATAESKSRTAVVYK 267 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK-------RIETLFTNDLD 342 + D ++ A +E +++ +S S + + Sbjct: 268 NSQLYLRINSFTDDVPLCIVLKAMGIETDHEIIQLISNSPTTFKNSNNLTTPSSNLPNGL 327 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRP----GEPPTREAAESLFENLFFSEDRYDLS 398 L + N RL AL+ I + +RP + + ED +D+ Sbjct: 328 DYITFLNDLYNEDINSRLDALMYIGKKIRPRVLGKGFFSSNKDRAPKSKQMILEDTHDI- 386 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 + R+ + +++ + SG + + + +++++ N +DD DH GN+R+ G+ Sbjct: 387 -LSRVLLSHIPMKDCRDFSGKIKTLSL--MAHRVLNVVNNVEPLDDKDHYGNKRLELAGQ 443 Query: 459 MAENQFRVGLVRVERAVKERL--------------------SLGDLDTLMPQDMINAKPI 498 M F + +K+ + + D+ LMP D+I Sbjct: 444 MISILFEDFYKKFLSNMKKSIESILVKYLEANPNPAKGENSNFPDIFGLMPTDIITNGMQ 503 Query: 499 SAAVKEFFGSSQLSQF-MDQNNPLSEITHKRRISALGPGGLTRERAGFE-------VRDV 550 +A G+ + +F M+++ ++ IS++ G +T+ + FE R + Sbjct: 504 NAIAT---GNWNIKRFRMEKSGVSQVLSRLSYISSI--GMMTKTDSQFEKGRKVSGPRAL 558 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK-VTDGVVTDEIHYLSAI 609 P+ +G +CP +TPEG + GL+ +LS+ + TP + + + + I LS+ Sbjct: 559 QPSQFGILCPCDTPEGESCGLVKNLSLMTHVTSD--VPTPVLETLLFTLGVEPIDTLSSH 616 Query: 610 EEGNYV--------------IAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVD 651 + N + N L V ++ R +G ++F + Sbjct: 617 DMFNPWKGTSEKCDNLLNARLVLLNGILLGIHRNAKFLVNSIIKLRRRGLINMFVSVYEN 676 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV-----------------PTLR 694 + S G L L + + + +Q V + Sbjct: 677 SQQNQV-HISSDGGRLCRPLIVVQNSVPRLTDELVQQLVENKIKMEYLFNNGILEWIDVN 735 Query: 695 ADKPLVGTGMERAV------AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 + L+ E+ + S ++ + G++ + + ++ + M G Sbjct: 736 EENNLLIVMREKDITNLTTHLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGS 795 Query: 749 DIYNLTKYTRSN---QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 Y ++ R + Q P V+ + +L GQN VA M Sbjct: 796 IGY--NQFQRCDTVVHLMNYTQQPLVTTKTI----------QLVNFDKLPAGQNAIVAVM 843 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 + GY ED+I++++ + ++ L C T + P+ + S Sbjct: 844 SYQGYEIEDAIILNKASIDRGFARCYTLRRLTCEI--TSGNATSLNGFNPSKSQNKDSDS 901 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG-- 923 + ++ +G +V+ G +L+ P + +K + D V Sbjct: 902 NNEFVIGVGEQVSPGQVLISTKAPPTDFTTNGSMNGKGTDKNQKTGN--DDKYIVNKYNL 959 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 +G ID + T + + + + + + S G + + Sbjct: 960 NTGGCIDRVILTENYNGNKMYKIMVRQSRPPEIGDKFSS-----RHGQKGVVGLIAEHED 1014 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 + + +P G +L +L + Sbjct: 1015 MPFTESGIVPDLIMNPHGFPSRMTVGKLLELVASKSSVFS 1054 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 89/464 (19%), Positives = 170/464 (36%), Gaps = 61/464 (13%) Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS---GTVIDVQVFTRDGVEKDKRALE 947 +L + + A+ + +++D+ + + ++ T + + +L Sbjct: 828 NFDKLPAGQNAIVAVMSYQGYEIEDAIILNKASIDRGFARCYTLRRLTCEITSGNATSLN 887 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 Q K S ++ G VL++ + Sbjct: 888 GFNPSKSQNKDSDSNNEFVIGVGEQVSPGQVLISTKAPPTDFTTNGSMNGKGTDKNQKTG 947 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 + + + ++ + + K+ K+ + R + GDK + Sbjct: 948 NDDKYIVNKYNLNTGGCIDRVILTENY----------NGNKMYKIMVRQSRPPEIGDKFS 997 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 RHG KGV+ I EDMP+ E+G D+++NP G PSRM +G++LE ++ G+ Sbjct: 998 SRHGQKGVVGLIAEHEDMPFTESGIVPDLIMNPHGFPSRMTVGKLLELVASKSSVFSGNF 1057 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 +++ L + + Sbjct: 1058 VDSTPFSNSYSDNLCNDLNNSG-------------------------------------- 1079 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 K ++I ++L G+ LY G +G + +G +Y +L H+V DK+HAR Sbjct: 1080 -SNKMSDICDILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARG 1138 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK 1303 G +T+QP G+++ GG R GEME L AYG++ L E L + SD +V Sbjct: 1139 RGPRQPITRQPTEGRSRDGGLRLGEMERDCLIAYGSSNLLVERLMLSSDVFNIEVCSSCG 1198 Query: 1304 MY-----KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 N + +P + +L +E++++ I L + Sbjct: 1199 FMGYNNFCKFCQNNSLAQVSLPYACKLLFQELQAMNIRPSLIVK 1242 >UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis RepID=A9VCU6_MONBE Length = 1136 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 117/504 (23%), Positives = 194/504 (38%), Gaps = 98/504 (19%) Query: 883 LVGKVTPKGETQLTPEE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFT 935 +V TP + +P ++ + G +K D+ L N ++ + + Sbjct: 681 IVASFTPFSDFNQSPRNMYQCQMGKQTMGVPGQAIKYRADNKLYSLNSGQTPLVRPRAYN 740 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR---IRAVLVAGGVEAEKLDK- 991 GV+ + D+ + + IL G R VL ++ + K Sbjct: 741 EYGVDNFPVGNNAIVCVIAYTGYDMEDAM-ILNKGSVERGFMHARVLATKVIDLTEKTKS 799 Query: 992 ---------LPRDRWLELGLT--DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 LP+DR L + D + ++ ++ D L + R +I +G+ Sbjct: 800 RVCHYYFGVLPKDRSANLKMEKLDADGLPRVGAHIKEGDALYSYIDGSTNESRTEIYRGE 859 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 + + V + L++ R GDK A RHG KG++S++ P DMP+ E+G DI+ NP Sbjct: 860 --PAIIDRKVTIRLSINRNPIIGDKFASRHGQKGILSQLWPTADMPFSESGIIPDILFNP 917 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 G PSRM IG ++E+ G +A G D Sbjct: 918 HGFPSRMTIGMLIESMAGKSAALHG-------------------------------VAHD 946 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + F E + E L+ G R+Y G TGE+ Sbjct: 947 ATPFMFNE-------------------NERAVDYFGEQLRTAGYNYHGHERMYSGITGEE 987 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 FE + +G ++ +L H+V DK R+ G + +T+QP+ G+ + GG RFGEME AL Sbjct: 988 FEVDIFIGNVFYQRLRHMVSDKFQVRTQGPVNSLTRQPVKGRKKNGGIRFGEMERDALLG 1047 Query: 1281 YGAAYTLQEMLTVKSD----DVNGRTKM-------------------YKNIVDGNHQMEP 1317 +G A+ LQ+ L SD DV + + DG + Sbjct: 1048 HGTAFLLQDRLFNCSDRSEVDVCRKCGSLLSPYSSEKTAANRIRVLRCRGCSDGGEVVRV 1107 Query: 1318 GMPESFNVLLKEIRSLGINIELED 1341 +P F L E+ ++ I + L+ Sbjct: 1108 NLPYVFRYLTAELSAMNIRLSLDV 1131 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 113/753 (15%), Positives = 237/753 (31%), Gaps = 85/753 (11%) Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 L + + L+ + + ++ +M F I N K+ Sbjct: 148 LPIMIMSNACRLNGLSPRELVMKKEEAQEMGGY----------FIINGNEKIVRMLLMPR 197 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 I V Y + T + + +L + Q Sbjct: 198 RNHPICLDRPSYVNRGPGYSSYGVQMRCVRPDQSAQTVVVHYKNDGTCTLGFSYRKQQYL 257 Query: 330 HKRIETL-FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE-PPTREAAESLFEN 387 I L + + + +R D +N L VEI E +++A + N Sbjct: 258 IPAILLLRALSGVSDRQIFMDIVRGDMSNSFLVERVEIMLRQYTRERLFSQQACLAYLGN 317 Query: 388 LF-----FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 LF + D+ A + F R LL ++ +++++ + G + Sbjct: 318 LFKVILNLHPETSDVEA-AHILFKRVLLVHIAPNDFQAKYRVLVGLIRRVYSLAAGSTQP 376 Query: 443 DDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP- 497 D+ D + + G + + Q LV +++ V+ L +G + + + Sbjct: 377 DNADSQMLQELLLPGHIYCAFVKEQMSEYLVAMQKLVQTDLRMGKTVDVSNTNYLQTDVM 436 Query: 498 -----ISAAVKEFFGSSQLSQ--------------FMDQNNPLSEITHKRRISALGPGGL 538 I + ++ F + L+ D+ N L ++H R + G Sbjct: 437 RRCPDIGSKLEYFMSTGNLNSPTALDQMQVTGFTIVADKLNFLRYLSHFR---CVHRGAY 493 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 + VR + P +G +CP+ TP+G GL+N L+ + + G+ Sbjct: 494 FSQMKTTAVRKLLPEAWGFLCPVHTPDGAPCGLLNHLARHCLPPTEPVDISSLPPTLLGL 553 Query: 599 V---TDEIHYLSAIE--EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 E + ++ +++ L++ F E L + + + + + ++ Y+ Sbjct: 554 GMIAVSEQPHFHCLDVLLDGHLVGFL--ALEQAPKFAEQLRILKIRDDERVPNTLEIAYV 611 Query: 654 ------DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV---GTGM 704 + S A L+ + + + ++ + K V T M Sbjct: 612 APRAAGQFPGLYLFSTPARLLRPVRNLRMKSTEFVGSFEQVYLNVAVDPKEFVSGETTHM 671 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E ++ + D ++ + + +M G+ + R++ Sbjct: 672 ELTK-----HGFLSIVASFTPFSDFNQSPRNMYQCQMGKQTMGVPGQAIKY--RADNKLY 724 Query: 765 IN---QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 Q P V E G + +G N V + + GY+ ED++++++ Sbjct: 725 SLNSGQTPLVRPRAYNEYG----------VDNFPVGNNAIVCVIAYTGYDMEDAMILNKG 774 Query: 822 VVQEDRFTTIHIQELACV--SRDTKLGPEEITADIPNVGEAALS--KLDESGIVYIGAEV 877 V+ + + +P A L KLD G+ +GA + Sbjct: 775 SVERGFMHARVLATKVIDLTEKTKSRVCHYYFGVLPKDRSANLKMEKLDADGLPRVGAHI 834 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 GD L + T + AI K Sbjct: 835 KEGDALYSYIDGSTNESRTEIYRGEPAIIDRKV 867 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 92/268 (34%), Gaps = 67/268 (25%) Query: 29 SIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ--SYSGNSELQYVSYRLGEPVFD----- 81 + +DSF ++ GLE A + P+ + + L RL +P Sbjct: 49 APHVDSFNYMVKH------GLEQAVADLDPLTFVAQNKTISLSIAKCRLEQPTVSRKEGF 102 Query: 82 -------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN- 133 EC+ R VTY + + + + + + Y+G++P+M + Sbjct: 103 STANALYPAECRQRRVTYKGDFYLTVNIEVEGQPNAWQVER-------YVGQLPIMIMSN 155 Query: 134 -----------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 G F+ING E+++ L D+ ++ + Sbjct: 156 ACRLNGLSPRELVMKKEEAQEMGGYFIINGNEKIVRMLLMPRRNHPICLDR-PSYVNRGP 214 Query: 171 LYNARIIPYRGSW---------LDFEFDPKDNL-FVRIDRRRKLPATIILRAL-NYTTEQ 219 Y++ + R + ++ D L F ++ +PA ++LRAL + Q Sbjct: 215 GYSSYGVQMRCVRPDQSAQTVVVHYKNDGTCTLGFSYRKQQYLIPAILLLRALSGVSDRQ 274 Query: 220 ILDLFFEKVIFEIRDNKLQMELVPERLR 247 I ++ N +E V LR Sbjct: 275 IFM----DIVRGDMSNSFLVERVEIMLR 298 >UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYC9_9BACE Length = 1237 Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 261/1382 (18%), Positives = 448/1382 (32%), Gaps = 255/1382 (18%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP-EGQYGLEAAFRSVFPIQS 61 +SY RI K + +D+ LL Q +S+QK++ + L R + +Q Sbjct: 2 FSYDPSNRILKVQKLAEEEVDL-GLLEYQKESYQKYLTETIYSDMEYLLQVMREL--LQV 58 Query: 62 YSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++E + G E + + +Y P+ K + + E Sbjct: 59 SQVDAEFRVGDLYCGNYK---NEVKKKSPSY-YPVYAKFTI-----------DGAVFPNE 103 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 V + IP M ++G NG RV++ Q+ + V + +DK + Sbjct: 104 VEVFRIPAMDEDGILNFNGDRRVLLMQMVAAERVSYAADKQTVSITTPRRN--------- 154 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALN------------YTTEQILDLFFEKVI 229 + FD ++ ++ R K+P ++RA N +T+ IL F Sbjct: 155 --ISLMFDGTKDVTIKYGPRNKIPMHKLIRAYNAKEKVYDDPSKLFTSAYILSAFATDSA 212 Query: 230 FEIR--DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL---EKDDVKL 284 +++L + G+ + + R R + + + ++ Sbjct: 213 ATDEAIEDELDKLNIYATYSGDDYALGKTRDALNEALSLDRARGRILSRPVGPFEAGRRV 272 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + + YI + + Y+ + L+ +L+ +G L + Sbjct: 273 DDEVLHYIHLHCINEIYVKAIPDVV----GYTLTQELVISFVPAGTHNNSRLQEALPEFA 328 Query: 345 PYI--------------SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESL------ 384 Y ETL + RPG P R E Sbjct: 329 DYSAIPQDSQVCIFMSSKETLTKEDVQFLYDVGAHHVDCKRPGSAPIRATFEEEVIGNYT 388 Query: 385 -----FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL--IDIRN 437 R+ V N E L+ D++ + I Sbjct: 389 VRLGDIYGHNIPAGRFHDEWV-CFYNNPKF---ERTDMDHLNTHDLMALYSLCAFIKKNP 444 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP 497 + + D D +++ + E+ N R L + +S L+ + Sbjct: 445 EENFLLDKDFGLLKKVLAANELFSNAMREVLPDFVKHYSVSISRAISQNLLTEGKFAG-- 502 Query: 498 ISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGR 557 +S K++ + NP++ + + L T E ++R + YGR Sbjct: 503 LSDMWKKYLWDKNYLDIANTINPIAVVAQ---TNHLVSDLHTSEIPE-KMRLLSMGFYGR 558 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA 617 +CP ETP G +G+ N+ ++ A+ + G L TPYR+V EI +S +E Y+ A Sbjct: 559 ICPYETPSGKKLGITNTKAIGARIKD-GILTTPYRRVLKNSN-GEIESIS--QEITYMDA 614 Query: 618 QANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 Q +E + DL++ + D Sbjct: 615 Q-----EEAQFRIGDLLSLKK------------------------------------DGY 633 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN 737 R L M R P + V V + ++ + + V Sbjct: 634 RYLNTKVMARVPAPNNQVTVESVDAYTLDYVNAYCEQHL-SPTAALIPFAGSDDAVRVTY 692 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 M + + + S C N V R +G+L L Sbjct: 693 ATNMLKQSILVQGSQIPRVFTSMYRRCFNHS-----NTYVIRAKKDGWVEQIPMGKLQL- 746 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV 857 ++ ED I + E V ++ Sbjct: 747 --------TYDDGTIED-IEICETSVTNQSVNFLNFH----------------------- 774 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 V G GD+LV E +P L A + + +D+ Sbjct: 775 -------------VKEGDHFKKGDVLVD-SAIAREGIYSPGVNLFAAYLAD-GYNYEDAV 819 Query: 918 LRVPNGVSGTV-IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + + I + T + ++ + + + E I + S+ Sbjct: 820 ELSEYAANQFISISTETITHRMHRQSNESIRVGTEYCYRF---IPENGVIAKVSRQSKSD 876 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 A + V R L E+ ++ +LAE Sbjct: 877 ARCHSKDVL--------RSGKHSGILYKIERNHKETRLAEYNA----------------- 911 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 +L R++ GDKMAGRH NKG S I +MP NG +DI Sbjct: 912 ----------------HLLSFNRLRTGDKMAGRHSNKGTASIIRKNSEMPCFMNGRQLDI 955 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 +LNP GVPSRMNIGQ E +LG A + + + ++ ++ +DL + Sbjct: 956 LLNPCGVPSRMNIGQNFEAYLGFIAYLLDVYVESDPFNGATKGDIKLLMRYVWDLANNEN 1015 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 K S + + +R + I++ G G L++ Sbjct: 1016 AKSVCSNYPMLPSTLHEQAIR-------------RHEAIRD--WAGCFNPDGTAYLWNPA 1060 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARS---TGSYSLVTQQPLGGKAQFGGQRFGEM 1273 TG+ E PVT G YMLKL H V+ K HAR+ YS +++QP G A+ GGQ+ GEM Sbjct: 1061 TGKCLENPVTFGVPYMLKLEHEVNHKFHARAGMLEEDYSQISKQPTEGSARGGGQKMGEM 1120 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG--MPES---FNVLLK 1328 E+ AL AYGA L E SD+V R ++ + G +P + F L+ Sbjct: 1121 ELCALAAYGATDFLYETCNSMSDNVLDRVNTTLRTLNLPEYTQGGESVPHAVEMFRYFLE 1180 Query: 1329 EI 1330 + Sbjct: 1181 TL 1182 >UniRef50_C5LHP3 DNA-directed RNA polymerase n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LHP3_9ALVE Length = 993 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 123/745 (16%), Positives = 231/745 (31%), Gaps = 103/745 (13%) Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 E+ + + E + + + MM G Sbjct: 274 EMGECVFDQGGYFIINGSEKVLIAMERMANNFVYCFQKKQPAKYTWICXXLLDMMPRGRL 333 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI-------LSKDDIIDV 428 P + + Y ++ + LL++E+ I + Sbjct: 334 PWTSSLKEGQPLGHRRVVVYTGLPNVYNRYAKELLQKELLPHLGVKQYCEPRKAYFIGYM 393 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDT 486 + +L+ + G+ DD DH G +R+ G + F ++ + K L Sbjct: 394 VHRLLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKRILQRQVDSGRH 453 Query: 487 LMPQDMI-NAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISA 532 I +A I+ ++ + SQ +++ +S ++H RR++ Sbjct: 454 FDLNSAIRSASSITDGLRYQLATGNWGIDKSGKSVRTGVSQVLNRLTFMSTMSHLRRMNT 513 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 L R + R +H TH+G +CP ETPEG +GL+ ++++ G L Sbjct: 514 ----PLERSGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTITV-GSLPNVVY 568 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 + + + ++ + + N G +V E+ R + D Sbjct: 569 DFLNEWGLENLDEINPSQIKHMTKVFLN------GQWVGMHADATMLCETLRDLRRKRDI 622 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME----RAV 708 + L F + A R L Q P+ + + +E + Sbjct: 623 DPEVSIIRDLQANELRIFTDGGRACRPLYVV----QPPPSQK--LCIKREHVEALRRMLL 676 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIV-------------------------IKVNEDEMYP 743 + G + G+V+Y+DA E++P Sbjct: 677 NNEHGGWDMLVEEGLVEYIDAEEEETCMVAMFVDDLRNAQRRKSKASSYCHTYTHCEIHP 736 Query: 744 GEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------------ 788 I + +S +NT + M ++G ++ D + Sbjct: 737 SLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYATNFNMRIDTMAHVLNYPQKPLVG 796 Query: 789 ------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 EL G N VA M ++GYN EDS++++ + ++H + + Sbjct: 797 TRAMEYLRFRELPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYMADEKR 856 Query: 843 TKLGPEEITA-----DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 E + SKLD G++ G V G DIL+GKV+P T Sbjct: 857 QGAQVVEEFRAPSWSKTYAMKRGDYSKLDNDGLINPGTRVHGDDILIGKVSPIPN--QTD 914 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 EE ++ +D S+ + +G V V + K + Sbjct: 915 EEGRIQ------KYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVRTLRVPTIGD 968 Query: 958 KDLSEELQILEAGLFSRIRAVLVAG 982 K S Q G+ R + Sbjct: 969 KFASRHGQKGTMGISYRQEDMPFTQ 993 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 66/209 (31%), Gaps = 62/209 (29%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY----------- 62 + L+S Q+ SF F+ ++ PI Sbjct: 114 SWAVADAYFKDKGLVSQQVGSFDDFVTYK------MQEIVDECPPITIIPQNQVGWESEG 167 Query: 63 -----SGNSELQYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIY-- 105 + +++ L +P + ++R +TYS+P+ V + Y Sbjct: 168 ARVYMDSSFLVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYAL 227 Query: 106 ----EREAPEGTVKDIKEQEVYMGEIPLMTDN------------------------GTFV 137 + + + + + ++ +G IP+M + G F+ Sbjct: 228 ADPDDPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFI 287 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHS 166 ING+E+V+++ + + K + Sbjct: 288 INGSEKVLIAMERMANNFVYCFQKKQPAK 316 >UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54649 Length = 440 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 210/440 (47%), Positives = 286/440 (65%), Gaps = 27/440 (6%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 SQLHRSPGVFFD D+GKTH+SGKVLYNARIIPYRGSWLDFEFD KDNLF RIDR++K+ Sbjct: 1 CCSQLHRSPGVFFDHDEGKTHASGKVLYNARIIPYRGSWLDFEFDHKDNLFFRIDRKKKM 60 Query: 205 PATIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDNKLQM 239 +T IL+AL T+E+IL F+E F+ + N + Sbjct: 61 ISTTILQALPSKASEKYLEECHQNKVDPDIYKVSGMTSEEILTYFYETFTFKKQKNGWVV 120 Query: 240 ELVPERLRGETASFDIEA--NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 L + + + F++ + ++ K +++ + +++++ V E + G + Sbjct: 121 NLDLNKFKYKNLPFNLVDPLSKEIVAHKDVKLSLKLLKEIKDKKVSKFFFTEEDLYGFYL 180 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 + D ++ G + A LS + +L++ + + N I +L D N Sbjct: 181 SNDIVNYDNGLVYAEAGTLLSKEFFERLNELSIDQFSVVNANQATGNLGIINSLVADKNN 240 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 R AL +I++++RPGEPPT EA+ LF+N+FFSEDRYDLS VGR+K N L ++ S Sbjct: 241 SREEALFDIFKILRPGEPPTLEASNYLFQNMFFSEDRYDLSEVGRVKLNSYLSLDKTNKS 300 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 ILSK D++ V KKL D++ DDIDHLGNRR+RSVGE+ ENQ+R+GLVR+ERA++E Sbjct: 301 RILSKSDVLAVAKKLFDMKTESAGKDDIDHLGNRRVRSVGELIENQYRIGLVRMERAIRE 360 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 ++ D++++MPQD++N+KPI +KEF G+SQLSQFMDQ NPLSEITHKRRISALGPGG Sbjct: 361 KMGTVDIESIMPQDLVNSKPIQTVLKEFTGTSQLSQFMDQTNPLSEITHKRRISALGPGG 420 Query: 538 LTRERAGFEVRDVHPTHYGR 557 LTRERAGFEVRDVH THYGR Sbjct: 421 LTRERAGFEVRDVHTTHYGR 440 >UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeota RepID=A9A459_NITMS Length = 1115 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 163/847 (19%), Positives = 300/847 (35%), Gaps = 102/847 (12%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY--IAGKVVAKDYIDESTGE 308 F I + +V V + I E ++ Y I G + + ++ G Sbjct: 150 GYFIINGSERVIVGLEDLSYNKIIVDRETVGGNIVHKAKVYSSIVGYRAKLELVMKNDGL 209 Query: 309 LICAA-NMELSLDLLAKLSQSGHKRIETLFTN----DLDHGPYISETLRVDPTNDRLSAL 363 ++ + + ++ + G + + D + + A+ Sbjct: 210 IVARIPGSPVDIPVVTLMRALGLESDREIAAAVSLVDELQDELEASFEKAGDVPTAKDAI 269 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 V I + + PG E + D L +G+ NR Sbjct: 270 VYISKRIAPG-----MLEEFQIKRAETLLDWGLLPHLGKHPENRK-----------EKAQ 313 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + + KL++++ DD DH GN+ I+ G+M + FR + R +K +L Sbjct: 314 FLGEAACKLLELKLDWIRPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSG 373 Query: 484 LDT--LMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALG 534 I I+ + + +Q +D+ N LS I+H RRI + Sbjct: 374 QKRGINAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQS-- 431 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 L+R + FE RD+H TH+GR+CP ETPEG N GL+ +L++ + E K+ Sbjct: 432 --PLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKL 489 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 D +H+ A E+ + + +G + + + + RD Sbjct: 490 YD---LGTVHFFDAKEDLKK----DGTRIFVDGRLIG---YYKDGEQLAESLRDLRRNSK 539 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT--LRADKPLVGTGMERAVAVDS 712 + VS S I R + N R P ++ +KPL+ + ++ Sbjct: 540 IHPHVGVSFHKSEI----EGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISKKL 595 Query: 713 GVTAVAKRGGVVQYVDASRIV--IKVNEDEMYPGEAGID------------IYNLTKYTR 758 R GV++ +DA+ +++ ++ I ++ + Sbjct: 596 ISWTDLLRMGVLEMIDANEEENCYVTLDEKDTKKHTHLEVFPPAILGAGASIIPYPEHNQ 655 Query: 759 SNQNTCINQMPCVSLG---------EPV-ERGDVLADGPSTDL--------GELALGQNM 800 S +NT + M SLG V + + P + + GQN Sbjct: 656 SPRNTYESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNC 715 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN---- 856 VA +P++GYN ED+I++S+ V T + ++ G + +IPN Sbjct: 716 VVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRD-AFEIPNAEDN 774 Query: 857 ----VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 912 GE A L+E G+V A V GGDIL+GK +P + E F Sbjct: 775 IRGYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSPPRFMEEYRE-------FESSGPY 827 Query: 913 VKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF 972 +D+S+ V +G V V + + K + + + K S Q G+ Sbjct: 828 RRDTSIGVRPSETGVVDTVVMTQSNEGGKMYKIRARDMRIPEIGDKFASRHGQKGVLGIL 887 Query: 973 SRIRA--VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE 1030 ++ +G ++ + +G+ E + L + + +K++ Sbjct: 888 AKAEDLPYTASGMSPDVLINPHAFPSRMTVGMMMESICGKSAALRGKRFDGSAFVGEKMD 947 Query: 1031 AKRRKIT 1037 R + Sbjct: 948 EVREVMD 954 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 156/411 (37%), Gaps = 82/411 (19%) Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 A EI + ++LE A + G + K PR Sbjct: 765 AFEIPNAEDNIRGYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSP-PRFMEEYREFES 823 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + + + E +TQ ++ K+ K+ R + GD Sbjct: 824 SGPYRRDTSIGVRPSETG-------VVDTVVMTQSNE----GGKMYKIRARDMRIPEIGD 872 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 K A RHG KGV+ + ED+PY +G D+++NP H + + Sbjct: 873 KFASRHGQKGVLGILAKAEDLPYTASGMSPDVLINP---------------HAFPSRMTV 917 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G + ++ + +G Sbjct: 918 GMMMESICGKSA---------------------------------------ALRGKRFDG 938 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 F G K E++E++ SG+ +YDGRTG+ F V +G +Y KL+H+V DK+H Sbjct: 939 SAFVGEKMDEVREVMDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIH 998 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD-------- 1296 AR+ G ++T+QP G+A+ GG RFGEME L AYGA+ L++ L +SD Sbjct: 999 ARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCE 1058 Query: 1297 --------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 DV R + + D + +F +LL+E++SL + L Sbjct: 1059 RCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 119/345 (34%), Gaps = 67/345 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV--FPIQSYSGNSELQY 70 K + +L + L+SF +F+E+ GL++ V I++ ++Q Sbjct: 7 KRWPVIQDILKREGIARQHLNSFDEFLER------GLQSIINEVGQIDIENAEYPYKIQL 60 Query: 71 VSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +L +P E ++R V+YSAP+ ++ +V K ++ + Sbjct: 61 GKVKLQQPRMMELDGSITHITPAEARLRNVSYSAPVMMEASVV--------EDGKILESR 112 Query: 121 EVYMGEIPLM------------------------TDNGTFVINGTERVIVSQLHRSPG-V 155 V++G++P+M G F+ING+ERVIV S + Sbjct: 113 FVHIGDVPVMAKSNACILHNFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDLSYNKI 172 Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR-KLPATIILRALN 214 D + + K + I+ YR + L+ + RI +P ++RAL Sbjct: 173 IVDRETVGGNIVHKAKVYSSIVGYR-AKLELVMKNDGLIVARIPGSPVDIPVVTLMRALG 231 Query: 215 YTTE--------------QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 ++ L+ FEK + + G F I+ Sbjct: 232 LESDREIAAAVSLVDELQDELEASFEKAGDVPTAKDAIVYISKRIAPGMLEEFQIKRAET 291 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 + +H ++ L E + + K+ D+ Sbjct: 292 LLDWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLDWIRPDDKD 336 >UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSV4_ENTBH Length = 1138 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 149/873 (17%), Positives = 281/873 (32%), Gaps = 89/873 (10%) Query: 183 WLDFEFDPKDNLF---VRIDRRRKLPA-TIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 W++ D K + + +D + + L + + L +K + + Sbjct: 114 WVNMFIDVKKAYYENGIEVDVSKTIRVPFGSLPVMVKSELCALKELNDKDNIRLGECPYD 173 Query: 239 MELVPERLRGETASFD---IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 GE I N +K + + ++ ++P + Sbjct: 174 QGGYFIITGGEKVIVAQERIATNMVHIFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKV 233 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL--FTNDLDHGPYISETLRV 353 V I S + L + L + K I + + ND + Y+ +L Sbjct: 234 VKNLRVIRAS---INLVKQDIPVLIIFRALGFNSDKEILSYIQYDNDKELNEYLLNSLEE 290 Query: 354 DP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 D+LSAL I + P + + L +G+ Sbjct: 291 ASCIQDQLSALDFIGKR----SAPIGSPKSKRIDFAKQILIKEFLPHIGQQ--------- 337 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 E + ++ K++ + GK +VDD DH G +R+ G + N F+V ++ Sbjct: 338 --EFCETKKAYFLGYMINKILLVITGKRDVDDRDHYGKKRMDLSGPLLANLFKVLFKKLL 395 Query: 473 RAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQ 517 + L + + + I+ K + +Q + + Sbjct: 396 TETTKYLQKCVENNREFNLTIGLKSSIITQGFKYALATGNWGHQEKAMSTRAGVAQVLSR 455 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 N LS ++H RR++ + +E R +H TH+G +CPIETPEG GL+ +LS+ Sbjct: 456 YNFLSTLSHLRRVNT----PIEKEGKLAAPRQLHNTHWGMICPIETPEGHACGLVKNLSL 511 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE-EGNYVIAQANSNLDEEGHFVEDLVTC 636 A + G ++ + + + + + I V + V+ L Sbjct: 512 MAYISV-GKSSNQIIEILEELGVERLEEIEYIYGTKILVNGAWIGVTSDPVRIVQILKKF 570 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R GE D + + + S L + N L+ Sbjct: 571 RRHGEIDSEISIIFDIKENEIK-INSDAGRPCRPLFIVENNELLVNKQDIEDLKNIKIKW 629 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG---EAGIDIYNL 753 L+ G + G+ D ++ + E++P + Sbjct: 630 DDLIKNGK-IELLDIEEEEVSLIAMGLNDLKDTNK---QYTHCEIHPAIILGITASVIPF 685 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------------------TDLGELA 795 + S +NT + M ++G D S EL Sbjct: 686 PTHNPSPRNTYQSAMGKQAMGIYSTNFFKRMDTLSNILCYPQKPLVSTKSMEYIKFKELP 745 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI----- 850 GQN VA ++GYN EDSI++++ + F + + + + G E Sbjct: 746 SGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFRSFLFRTYSDQEKMKYTGVNEKICKIE 805 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 + I + L GIV G +V G D+++GK+TP + + ++ G Sbjct: 806 RSVIFRPKKNNYDILGNDGIVCPGTQVYGDDVIIGKMTPILDVE--------KSTPGNPF 857 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 KD+S + G + V V T+DG + K + + K S Q G Sbjct: 858 YLFKDTSTLIRKTEQGNIDKVIVTTKDGYKFTKVKVRS-MRIPQMGDKFASRHAQKGVVG 916 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + + + P + + Sbjct: 917 ITLKQEDMPFTSDGLIPDVIINPHAIPSRMTIG 949 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 89/469 (18%), Positives = 163/469 (34%), Gaps = 86/469 (18%) Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL--- 946 +L + + AI + +DS + + + +F ++ + Sbjct: 739 IKFKELPSGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFRSFLFRTYSDQEKMKYTGVN 798 Query: 947 -EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 +I +++ + IL + V K+ P + + Sbjct: 799 EKICKIERSVIFRPKKNNYDILGNDGIVCPGTQVYGDDVIIGKM--TPILDVEKSTPGNP 856 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 + + E + I + K KV + R Q GDK Sbjct: 857 FYLFKDTSTLIRKTEQGN------------IDKVIVTTKDGYKFTKVKVRSMRIPQMGDK 904 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 A RH KGV+ EDMP+ +G D+++NP +PSR IG Sbjct: 905 FASRHAQKGVVGITLKQEDMPFTSDGLIPDVIINPHAIPSR---------------MTIG 949 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 A+L + G+ Sbjct: 950 HLFEALLGKL---------------------------------------TTLNGIEGDAT 970 Query: 1186 VF--DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 F EI + L G ++ G TG + + + +G Y +L H+VDDK+ Sbjct: 971 PFANKPQTIDEISKELAKYGYQKRGFEIMHSGATGYKLKSQIFIGPTYYQRLKHMVDDKL 1030 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 HAR+ G ++T+QP+ G+++ GG RFGEME + ++GA+ L+E L SD Sbjct: 1031 HARARGPLQIMTRQPVEGRSREGGLRFGEMERDCIISHGASAFLKERLMDVSDVYT--CG 1088 Query: 1304 MYKNI----------VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + N + + +P +F +L++E++ + I + ++ + Sbjct: 1089 VCDNCGLICNNNCTGCNNSTISNINIPYAFKLLIQELQGMNIFMRIQTQ 1137 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 64/391 (16%), Positives = 130/391 (33%), Gaps = 58/391 (14%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ----SYSGNSELQ 69 ++ D L+ QLDSF +F++ + E + SV I S +L Sbjct: 21 NWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIID-ENSIISVKSIPTAGNSIEREIKLY 79 Query: 70 YVSYRLGEP-----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 + + P E ++R +TY + + ++ YE K I+ Sbjct: 80 FGQISILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVKKAYYENGIEVDVSKTIR 139 Query: 119 EQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPG 154 V G +P+M + G F+I G E+VIV+Q + Sbjct: 140 ---VPFGSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFIITGGEKVIVAQERIATN 196 Query: 155 VFFDSDKGKTHSSGKVLYNARI--IPYRGSWLDFEFDPKDNLFVRIDR------RRKLPA 206 + K Y A I + GS L F K +R+ R ++ +P Sbjct: 197 MV---HIFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKVVKNLRVIRASINLVKQDIPV 253 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 II RAL + +++ + + + + N+ + + E + ++ GK G Sbjct: 254 LIIFRALGFNSDKEILSYIQYD-NDKELNEYLLNSLEEASCIQDQLSALDFIGKRSAPIG 312 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 + R + + + + + ++ +++ + + Sbjct: 313 SPKSKRIDFAKQILIKEFLPHIGQQEFCETKKAYFLGYMINKILLVITGKRD---VDDRD 369 Query: 327 QSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 G KR++ + + + L + T Sbjct: 370 HYGKKRMDLSGPLLANLFKVLFKKLLTETTK 400 >UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax=Chlorella vulgaris RepID=RPOB_CHLVU Length = 1301 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 163/527 (30%), Positives = 254/527 (48%), Gaps = 66/527 (12%) Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 H + + R K+ + I + E I+ V GD+L Sbjct: 792 HKKLHSEDFRKNKVEITTTYSLIQYQRTNQSTCFSERPILPENEWVEKGDLLAD-GASSS 850 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 + +L+ + +L A + + +D+ L +S ++D ++FT ++ A++ + Sbjct: 851 QGKLSIGQNVLVAYLPWEGYNFEDAIL-----ISQRLVDQEIFTSLHMDHYDIAVQNTQY 905 Query: 952 QLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKL--------- 992 L++ + ++ L++ I + + G K+ L Sbjct: 906 GLERITNLIPLKISDSTRDIYKMGNLDSRGLVEIGSWVEPGDYLVGKMSPLDPKSPPLQS 965 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 P ++ + L E+ + L ++ + +L+ V+V Sbjct: 966 PHEKLYNVILQREKTSFRNTSLRVPKGVQGFVLGVQILPSQEPDVAALAEKDEILR-VRV 1024 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 L +R+IQ GDKMAGRHGNKG++S I P +DMPY +GTPVDIVLNPLGVPSRMN+GQI Sbjct: 1025 LLLQRRKIQVGDKMAGRHGNKGIVSLILPRQDMPYLPDGTPVDIVLNPLGVPSRMNVGQI 1084 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 LE LG+A + ++ L +Q GA+ + + S + Sbjct: 1085 LECLLGLAGHFLHERYTTYLFDEQY--------------GAEASRSLVYSKLYQASLKTR 1130 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 + + G+IR++DGRTG F++P+T GY Y+ Sbjct: 1131 NP-------------------------WVFEPHHPGKIRVFDGRTGLTFDQPITAGYAYI 1165 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 LKL HLVDDK+HAR TG YS +TQQP+ G+A+ GGQR GEMEVWAL+AYGAA+TL E T Sbjct: 1166 LKLVHLVDDKIHARPTGPYSAITQQPVKGRARNGGQRLGEMEVWALQAYGAAHTLHEFFT 1225 Query: 1293 VKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 VKSDD++GR + NI N + G PESF ++L+E+++L N ++ Sbjct: 1226 VKSDDLDGRQQAVLNIY-ANKPVTTGNPESFKLILRELQALCFNFQV 1271 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 153/592 (25%), Positives = 257/592 (43%), Gaps = 48/592 (8%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 L+ F P+ F + D +K A ++ + + I K R L + ++P Sbjct: 78 LEIRFFPEGIQFRKPDFTQKQ-AVVLGKIYG-SAVYIPVGIHSKKSSTFRIEWLFVGILP 135 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + F + +V + + R + + + + + K Sbjct: 136 --IMTRQGHFVVNGVSRVVLHQMVRNPGIYTLPI---HPRTKIGTLRIVPEKGGWIHITV 190 Query: 304 ESTGELI-CAANMELSLDLLAKLSQSGH-----------------KRIETLFTNDLDHGP 345 + + ++ + LL L G + L H Sbjct: 191 DKKHRVWFLTRSLRRKVSLLIFLQAVGIPFHDIFLRLEHSKILQNSFVAELGEGSARHDD 250 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPP-------TREAAESLFENLFFSEDRYDLS 398 + + A +Y + P + A F + +++D+ L Sbjct: 251 VLERAGLYAHPATQEEAWQYLYSHFKEYSPYAHKNLAAKEQTAREFFYSTLWNKDKLILG 310 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 +GR +F + E + L+++D+++ + L+ + + K VD+ID L +RIR E Sbjct: 311 HIGRQQFREKIGSIEPLENTSLTREDLLEATQALLSLMHKKRVVDEIDSLTQKRIRGCDE 370 Query: 459 MAENQFRVGLVRVERAVKERLSL-----------GDLDTLMPQD-MINAKPISAAVKEFF 506 G+ E + +++ +L Q+ + +K +S + K FF Sbjct: 371 FLLEHLATGMKEFELFFRRKVTFLPATKSITGAENPFRSLWRQNKAVFSKTVSKSWKRFF 430 Query: 507 GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 566 S L QFMDQ N L+E THKRR++ LGPGG++ ++ ++R +HPT+YGR+CPIETPEG Sbjct: 431 TSGTLGQFMDQTNSLAETTHKRRLTVLGPGGISGKQTTIQIRGIHPTYYGRLCPIETPEG 490 Query: 567 PNIGLINSLSVYAQTNEYG--FLETPYRKVTDGVVTDEIHYL--SAIEEGNYVIAQANSN 622 N GL+NS +V + ++YG L TP+ +V G V + L S +E + A A+ Sbjct: 491 KNAGLVNSFTVLSVLSKYGARTLTTPFYQVYKGQVQKTLPPLRVSPRQEYKLIEAPADIQ 550 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 L + + R + ++ V Q +SV SLIPFLEH+DANRALMG Sbjct: 551 LTAWNVLPKTHLPVRKELNFHSDVATRITTQSVGILQNISVATSLIPFLEHNDANRALMG 610 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 +NMQRQAVP L+ PLVGTG+E V D + A + G + V +++I + Sbjct: 611 SNMQRQAVPLLKPQAPLVGTGLESRVIGDVNHSMQASKTGFITKVSSTKIQV 662 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 90/265 (33%), Positives = 139/265 (52%), Gaps = 14/265 (5%) Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 Y+L +Y R+NQ+TC ++ P + E VE+GD+LADG S+ G+L++GQN+ VA++PW Sbjct: 808 TTTYSLIQYQRTNQSTCFSERPILPENEWVEKGDLLADGASSSQGKLSIGQNVLVAYLPW 867 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS---- 863 GYNFED+IL+S+R+V ++ FT++H+ ++T+ G E IT IP + Sbjct: 868 EGYNFEDAILISQRLVDQEIFTSLHMDHYDIAVQNTQYGLERITNLIPLKISDSTRDIYK 927 Query: 864 --KLDESGIVYIGAEVTGGDILVGKVT---PKGETQLTPEEKLLRAIFGEKASDVKDSSL 918 LD G+V IG+ V GD LVGK++ PK +P EKL I + + +++SL Sbjct: 928 MGNLDSRGLVEIGSWVEPGDYLVGKMSPLDPKSPPLQSPHEKLYNVILQREKTSFRNTSL 987 Query: 919 RVPNGVSGTVIDVQVFTRD----GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 RVP GV G V+ VQ+ +K + + L Q +K + G Sbjct: 988 RVPKGVQGFVLGVQILPSQEPDVAALAEKDEILRVRVLLLQRRKIQVGDKMAGRHGNKGI 1047 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLE 999 + +L + D P D L Sbjct: 1048 VSLILPRQDMPY-LPDGTPVDIVLN 1071 >UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplantae RepID=Q01GR3_OSTTA Length = 999 Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats. Identities = 135/827 (16%), Positives = 265/827 (32%), Gaps = 121/827 (14%) Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 E F I + KV + + R T +K K + G Sbjct: 27 EGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPSKFMWQAECR----------SQPERGS 76 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE--- 365 ++ + + + G R + + L D L + Sbjct: 77 RGASSCVMRQMHAVGTKDAPGPIRCTLPYIRTDIPIFVVFRALGFVADKDILEHICYDLA 136 Query: 366 ---IYRMMRPG--EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE------- 413 + M+RP E ++ E + + +S R+K+ + +L++E Sbjct: 137 DNEMMEMLRPSIEEAFVIQSQEVALDFIGKRGSAVGVSREKRIKYAKEILQKELLPHVGV 196 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 E + ++ +L+ G+ DD DH GN+R+ G + FR ++ + Sbjct: 197 REDCETKKAYFLGYMIHRLLLCSLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRKLTK 256 Query: 474 AVK--ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNN 519 V+ + + + Q I AK I+ +K + SQ +++ + Sbjct: 257 DVRLYCQRCIDSGKEIQLQLAIKAKTITQGLKYSLATGNWGSQGAQDIRAGVSQVLNRLS 316 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 S ++H RRI++ + RE + R +H + +G +CP ETPEG +GL+ +L++ A Sbjct: 317 YSSTLSHLRRINS----PIGREGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMA 372 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN----SNLDEEGHFVEDLVT 635 + G P + D + + +S N + V L Sbjct: 373 LVSV-GSPSEPILEFLDEWTMENLEEISPSLIAESTKIFLNGVWVGVHRDPADLVRTLRK 431 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL-- 693 R + + S V + + ++ + L D ++ L +++Q + L Sbjct: 432 LRRQCDVDS-SVSVVHDIRLKELRLYTDYGRCTRPLFIVDDDQKL---RIKKQHIELLTE 487 Query: 694 -----RADKPLVGTGMERAVAVDS------GVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 + LV +G V + +T + + I+ E++ Sbjct: 488 KDVTGYSWNELVTSGFIEYVDTEEEETTMISMTIDDLAAARQSADRKTGVAIRYTHCEIH 547 Query: 743 PG---EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS----------- 788 P I + +S +NT + M ++G V + D Sbjct: 548 PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQIRMDTLGYVLFYPQKPLV 607 Query: 789 -------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 EL G N VA M + GYN EDS+L+++ + F +++ + + Sbjct: 608 TTRAMEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEK 667 Query: 842 DT-KLGPEEITADIPN----VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 L EE + + KLD+ G++Y A ++ Sbjct: 668 KQGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLIYDSAVLSK----------------- 710 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 KD S + + +G + V + T D + + + Sbjct: 711 -------------RFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVG 757 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 K S Q G+ + + P + + Sbjct: 758 DKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIG 804 Score = 334 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 111/558 (19%), Positives = 200/558 (35%), Gaps = 104/558 (18%) Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA--EVTGGDIL- 883 T+ I+ + +T + I+ I ++ A S ++G+ E+ IL Sbjct: 498 LVTSGFIEYVDTEEEETTM----ISMTIDDLAAARQSADRKTGVAIRYTHCEIHPSMILG 553 Query: 884 -VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI----DVQVFTRDG 938 + P + +P ++ G++A + ++ ++ G V+ V TR Sbjct: 554 ICASIIPFPDHNQSPRN-TYQSAMGKQAMGMYVTNYQIRMDTLGYVLFYPQKPLVTTRAM 612 Query: 939 VEKDKR--------ALEIEEMQLKQAKKDLSEELQILEAGLFSRI------RAVLVAGGV 984 R + I + + ++ GLF + G + Sbjct: 613 EYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKKQGSL 672 Query: 985 EAEKLDKLPRDRWLEL------GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 E+ ++ RD L + L D+ L++++ + K Sbjct: 673 SREEFERPDRDTCLGMRHGTYDKLDDDGLIYDSAVLSKRFSKKDCSTGMKHAETGIIDQV 732 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 L+ VK+ + R Q GDK + RHG KG + EDMP+ G DI++ Sbjct: 733 LLTTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIV 792 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP +PSRM I G + ++ + Sbjct: 793 NPHAIPSRMTI---------------GQLVECIMGKVAACM------------------- 818 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 G F +I +L G +Y+G TG Sbjct: 819 --------------------GKEGDATPFTPVTAEDISTMLHKCGYQKRGNEVMYNGHTG 858 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 + + +G Y +L H+VDDK+H+R G ++T+QP+ G+++ GG RFGEME + Sbjct: 859 RMLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCI 918 Query: 1279 EAYGAAYTLQEMLTVKSD----DVNGRTKM-------------YKNIVDGNHQMEPGMPE 1321 ++GAA L+E L +SD V + + KN + ++ +P Sbjct: 919 MSHGAASFLKERLMDQSDAYRIHVCQKCGLIAVANLKNQTFECCKNPSERTSVVQVMVPY 978 Query: 1322 SFNVLLKEIRSLGINIEL 1339 + +L +E+ S+ I L Sbjct: 979 ACKLLFQELMSMAIAPRL 996 Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 94/291 (32%), Gaps = 28/291 (9%) Query: 107 REAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHS 166 R ++ +GE P + G FVING+E+V+++Q S + +K K S Sbjct: 3 RSDYCSLHGHTDKELTELGECPY-DEGGYFVINGSEKVLIAQERMSTNHVYVFEK-KQPS 60 Query: 167 SGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID------------RRRKLPATIILRALN 214 R P RGS + V R +P ++ RAL Sbjct: 61 KFMWQAECRSQPERGSRGASSCVMRQMHAVGTKDAPGPIRCTLPYIRTDIPIFVVFRALG 120 Query: 215 Y-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH 273 + + IL+ + L+ + +F I++ G+R +A Sbjct: 121 FVADKDILEHICYDLADNEMMEMLRPSIEE--------AFVIQSQEVALDFIGKRGSAVG 172 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 + + ++ + E + V +D + + LL L + Sbjct: 173 VSREKRIKYAKEILQKELLPHVGVREDCETKKA----YFLGYMIHRLLLCSLGRRPEDDR 228 Query: 334 ETLFTNDLDH-GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 + LD GP +++ R + R + G+ + A Sbjct: 229 DHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEIQLQLAIK 279 >UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RNV9_RICCO Length = 1203 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 153/974 (15%), Positives = 304/974 (31%), Gaps = 170/974 (17%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQEC 85 L+S Q++S+ FI G++ AF S + + EP +D + Sbjct: 75 GLISHQINSYNDFI------NNGIQKAFDSFGEL---------------VVEPGYDPSKK 113 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVI 145 Y++ K+ L + K + + MT + +N + V Sbjct: 114 GENEWRYASVKFGKVALEKPTFWSGADEHKMLPRH----ARLQNMTYSSKMKVNVSVEVY 169 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP 205 ++ RS +GK Y +D E DN + I LP Sbjct: 170 TRKVVRS----------DKFKTGKDQY-----------VDKEVLNTDNRNITIG---SLP 205 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 + T + D F+ + + ++ + E++ + V + Sbjct: 206 VMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKS 265 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 + +R + ++ ++ + + ++ + L A + +++ + Sbjct: 266 EIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEI---PLWILFFALGVTSDKEVIDLI 322 Query: 326 SQSGHK-RIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESL 384 + RI +F + + + AL + R +R P E + Sbjct: 323 GYGSNDARIVNIFFASIHDADE-----KTEGFRRGKEALEYVVRQIRGTRFPPGENEDFF 377 Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 L S + ++K L+ NG+ + ++ Sbjct: 378 L-----------------------LYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNN 414 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL---GDLDTLMPQDMINAKPISAA 501 D N+R E+ E + +V + R + + L GD D + ++A ++ Sbjct: 415 WDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNG 474 Query: 502 VKEFFGSSQLSQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 + F + S + + NPL + R+ + + R Sbjct: 475 LSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYH----VQYTGKVGDAR 530 Query: 549 DVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSA 608 HP+H+GRVC + TP+G N GL+ +L+ + + P +++ S Sbjct: 531 FPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVN--ILEPLIDKLIARGMEKVPEDSH 588 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ---VVSVGA 665 + N V + QV+ QQ + S Sbjct: 589 SDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAG 648 Query: 666 SLIPFL---EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV-------- 714 ++ L ++ A G N Q++ + VGT E + G+ Sbjct: 649 RILRPLLVVQNLHKIEAFKGGNCTFQSL-LDKGIIEFVGTEEEEDCSTAWGIKFLLSGVD 707 Query: 715 ---------------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + G++ + + + + + + I R Sbjct: 708 GKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQ-QAIGFPTTNPNIRV 766 Query: 760 NQNTCINQMPCVSLGEPVER------GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 + + P L V GD EL GQN VA GYN E Sbjct: 767 DTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQE 826 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD-------IPNVGEAALSKLD 866 DS++++ ++ F + HI+ + +L + D IP+ + LD Sbjct: 827 DSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKI-GRVDSLD 885 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 + G +IGA + GDI++G+ G D S+++ + G Sbjct: 886 DDGFPFIGANLQSGDIVIGRCAESGP----------------------DHSIKLKHTERG 923 Query: 927 TVIDVQVFTRDGVE 940 V V + + D + Sbjct: 924 MVQKVVLSSNDEGK 937 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 85/451 (18%), Positives = 160/451 (35%), Gaps = 85/451 (18%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 N + + + D + ++ +LE + + + ++ + Sbjct: 808 YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDD 867 Query: 978 VLVAGGVE--AEKLDKLPRDRWLELGLTDEEKQNQLEQLAE--QYDELKHEFEKKLEAKR 1033 + G + ++D L D + +G + + + AE +K + ++ ++ Sbjct: 868 NVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQK 927 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 ++ D+ V L R GDK + HG KGV+ + E+ P+ G Sbjct: 928 VVLSSNDE----GKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIV 983 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 DIV+NP PSR GQ+LE LG G A V + + RA Sbjct: 984 PDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTLSVEAITNQLHRAGFSRW 1043 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + V++G ++ L Sbjct: 1044 GNER----------------------------VYNGRTGEMVRSL--------------- 1060 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 + +G + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEM Sbjct: 1061 -----------IFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1109 Query: 1274 EVWALEAYGAAYTLQEMLTVKSD----DVNGRTK-------------------MYKNIVD 1310 E L A+GA+ L E L SD + + K + Sbjct: 1110 ERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYCRVCES 1169 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + ++ +P +L +E+ S+GI+++ E Sbjct: 1170 VDEIVKVNVPYGAKLLCQELFSMGISLKFET 1200 >UniRef50_Q17U53 DNA-directed RNA polymerase, putative n=1 Tax=Solanum bulbocastanum RepID=Q17U53_SOLBU Length = 1018 Score = 339 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 164/1066 (15%), Positives = 325/1066 (30%), Gaps = 260/1066 (24%) Query: 13 KDFGKRPQ--VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG------ 64 ++F K+ + ++S Q+DS+ FI YG++ F SV I G Sbjct: 69 RNFCKKASAGFFEKYGVISHQIDSYNDFIR------YGIQRVFDSVGEIHVEPGYDPSKK 122 Query: 65 ------NSELQYVSYRLGEPVFD-----------------VQECQIRGVTYSAPLRVKLR 101 ++ +++ L P F + +++ +TYSA R Sbjct: 123 GEGDWKHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLNLWPRHARLQNMTYSA------R 176 Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 +++ + V+ K + G E+ + DK Sbjct: 177 IIVETHVFTKKLVRSDKFKT------------------GVEQFV--------------DK 204 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 + ++ RI P + + Sbjct: 205 ECVMEDKRDVFIGRI----------------------------PVMVNSELCWMSGADRP 236 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 D F+ + I ++ + E++ + + V G + +++ E Sbjct: 237 DCEFDHGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLK 296 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 + I+ + ++ A+ I L +++ E+ + + + I +D Sbjct: 297 HEHIKGEAKALSVYFFAEMPIWVLFFALGVSSDREVVDLIDVDIKDTNIINILVASIHDA 356 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 D + AL + R+++ + P +E+ E + F Sbjct: 357 DKN--------CEDFRKGKKALAYVDRLVKSCKFPPQESVEECIKEYLFPN--------- 399 Query: 402 RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE 461 + ++K L+ G+ +VD+ D N+R+ GE+ E Sbjct: 400 -------------LSGLKQKARFLGYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLE 446 Query: 462 NQFRVGLVRVERAVKERLSL---GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ----- 513 + RV + ER + + L GD + ++A I+ + F + Sbjct: 447 RELRVHVKHAERRMVKALQRDLCGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRM 506 Query: 514 --------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 + + NPL R+ +T + R HP+H+G+VC + TP+ Sbjct: 507 ERVSGVVATLRRTNPLQMTADLRK----TRQQVTYTGKVGDARYPHPSHWGKVCFLSTPD 562 Query: 566 GPNIGLINSLSVYAQTNE---YGFLETPYRKVTDGVVTDEIHYLSAIE----EGNYVIAQ 618 G N GL+ +L+ + LET +R +V D L + +G++V Sbjct: 563 GENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQKLVDDSATSLHGKQKVLLDGDWVGVC 622 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSL-------FSRDQVDYMDVSTQQVVSVGASLIPFL 671 +S L FV L R + E + ++ + Sbjct: 623 EDSAL-----FVSKLRRQRRRNEVPHQLAHTLAIPPGICYLLPTHVPVTLTEAQVEVKRD 677 Query: 672 EHDDANRALMGANMQRQAVPTL-------------------------------------R 694 E D R + ++ R P L Sbjct: 678 EQQDEVR--IFSDAGRIMRPLLVVSNLKNIKALKDGMKGGDYGFQTLLDKGIIELIGPEE 735 Query: 695 ADKPLVGTGMERAVAVDS-------------GVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 + G+E + D + G++ + + + + E Sbjct: 736 EEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLYQSEK 795 Query: 742 YPGEAGIDIYNLTKYTRSNQNT---CINQMPCVSLGEPVERGDV---LADGPSTDLGELA 795 + I + R + NT Q P G E Sbjct: 796 HSQ-QAIGFSTVNPNARVDTNTHQLYYPQRPLFGTMLSDSLGKPKCARHQKGMLSRPEYY 854 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS-RDTKLGPEEITADI 854 GQ VA GYN EDS++++ ++ F + H++ +G + D Sbjct: 855 NGQCAIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDS 914 Query: 855 PNVGE-----AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 N G+ + LD+ G +IGA + GDI++GK G Sbjct: 915 VNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKYAESGA----------------- 957 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955 D S+++ + G V V + + + K+ + + ++ K Sbjct: 958 -----DHSVKMKHTERGMVQKV-LLSANDDGKNFAVVSLRQVYEKS 997 >UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax=Eimeriorina RepID=RPOB_EIMTE Length = 1059 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 176/830 (21%), Positives = 332/830 (40%), Gaps = 36/830 (4%) Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 I Y G L + + T + + T ++ + +I++ Sbjct: 32 SIKNYLGDKLYLYYKKNKYTIYILSDFLFFKTTNLTSNITDTVQEFNSKILIFLPLKIKN 91 Query: 235 NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 K + L GE + IE N + K I+ + K I+ + Sbjct: 92 LKNNKYKIIYYLLGEIPKYTIEKNLIINGLKKTFISKLMFNYIGIFFNKFIKNNNNILYA 151 Query: 295 KVVAKD-----YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 K++ D + E N DL+ L G + + + Y+ + Sbjct: 152 KIIFNDKFIINIVLEENKCYCIFNNY--KYDLICFLYLLGISMQDIFIFSRYNKSFYLKK 209 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 L P+ + + + S F NL F + Y + K N Sbjct: 210 LLLTLPSLNINNIINYNIFKY-----------LSFFFNLSFKLNTYYIFNKVLNKNNSLY 258 Query: 410 -LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 + S L D I+++ L+DI+ K + D+D L R I ++G NQ+ L Sbjct: 259 SYIKNFSNSNNLIALDFINILDILLDIKYNKKNITDLDLLEYRSIFTLGNYFTNQYSFYL 318 Query: 469 VRVERAVKERL--SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITH 526 + + + + +L+ + +KE+ + L Q+++Q N SEI H Sbjct: 319 KKFSNILHNDIFKCIKNLEKYKLNTNSFKSKLYFNLKEYLTVNPLVQYLEQINSFSEIIH 378 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 K R++ ++ + ++R+++ G +C I+T EG N GL+ S + + + Sbjct: 379 KNRVTNYN----SKLKQNLQIRNINLNQLGSLCLIDTTEGINCGLVISFTKNIKIEKRNN 434 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 + PY V + + I ++++ + Y++ N L + F +K L + Sbjct: 435 FQFPYLPVLNIKTKNFITFINSFLQQTYIVLFNNYYLRKNKLF-NFFNLSLNKNSFKLKN 493 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 + + + + S +LIPF+ ++D R LMGA MQ Q VP L+ + ++ TG E+ Sbjct: 494 ISIQNMIYIKPMDMFSFAENLIPFIFYNDPARVLMGAKMQSQIVPILKNKRSIIITGYEK 553 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 + + + A + G+V YV + +I+I+ + Y L KY RSN T ++ Sbjct: 554 NLLNSTNLILKAYQEGIVVYVSSYKIIIRDLYNRK-------ITYFLDKYKRSNHFTILH 606 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 P V GE + G +L E G N+ V++ + GYNFED+I+++++++ Sbjct: 607 SKPNVWQGERIFCGQILTSTQDILFSEYIGGNNLLVSYGNFFGYNFEDAIVLNKKIIYSQ 666 Query: 827 RFTTIHIQELACVSRD-TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 FT++H + + K E T ++P + LD GI+ G++V DILV Sbjct: 667 LFTSLHFKVYEIIFNSLNKFSFEISTINLPKKSFYSKRNLDFFGIIKEGSKVLNNDILVS 726 Query: 886 KVTPKG-ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK-DK 943 K+ L P L+ +FG++ ++KD S+ V G SG ++ ++F+ K Sbjct: 727 KIFITNINISLLPLYNLIYILFGKEIKNIKDKSILVSFGNSGRIVKTELFSYSSKIKSYL 786 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 + + + + + G I +L + + +P Sbjct: 787 GYYLKCRVYICKQRLLSVGDKLCGRYGNKGIIAYILPSNDLPYTNTGIIP 836 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 114/472 (24%), Positives = 194/472 (41%), Gaps = 52/472 (11%) Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS------LRVPNGVSGT 927 G + G IL ++ LL + + +D+ + S Sbjct: 614 GERIFCGQILTS-TQDILFSEYIGGNNLLVSYGNFFGYNFEDAIVLNKKIIYSQLFTSLH 672 Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG-VEA 986 ++ + I + K + I++ G +LV+ + Sbjct: 673 FKVYEIIFNSLNKFSFEISTINLPKKSFYSKRNLDFFGIIKEGSKVLNNDILVSKIFITN 732 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + LP + + E K + + + + + +L + KI G Sbjct: 733 INISLLPLYNLIYILFGKEIKNIKDKSILVSFGNSGRIVKTELFSYSSKI----KSYLGY 788 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 +VY+ +R + GDK+ GR+GNKG+I+ I P D+PY G DI+ + LG+PSR Sbjct: 789 YLKCRVYICKQRLLSVGDKLCGRYGNKGIIAYILPSNDLPYTNTGIIPDIISDSLGIPSR 848 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MNIGQ+ E G++ + ++ ++ + + + Sbjct: 849 MNIGQLFENLFGLSCYFLNKRLCISNTFNLPKVYIKTILYNYINNIKEKSGN-------- 900 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 L + + + G+I L DGR G + P Sbjct: 901 --------------------------------LWIYNSYSPGKILLRDGRQGYKLSEPSF 928 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G KL H++ DK+H R+ G Y+ + QQP+ G+ + GGQRFGEME+WA+EAYG++Y Sbjct: 929 LGISKYSKLIHMIKDKIHYRTIGPYTELMQQPVKGRNKKGGQRFGEMEIWAIEAYGSSYN 988 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 L+E+L KSDD+ RT + N+ + ESF L++EI S+ +NIE Sbjct: 989 LRELLNYKSDDIIARTSLLSNLDNNIILDNITTTESFRTLIREIHSMNLNIE 1040 >UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0EG45_ENTDI Length = 1170 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 135/841 (16%), Positives = 266/841 (31%), Gaps = 121/841 (14%) Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE-------VPVEYIAGKVVAKDY 301 + F I+ + KV + + + + D +K + + + DY Sbjct: 169 QGGYFIIKGSEKVVIAQEKMAPNTVLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDY 228 Query: 302 IDESTGE------LICAANMELSLDLLAKLSQSGHKRIETLFT------NDLDHGPYISE 349 ++ + M+ + ++ G++ + + ND + ++ Sbjct: 229 PKLDKSRLKIKVPVLTLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTT 288 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 ++ + A + GE + E + E + + + L G K + L Sbjct: 289 AIQANECTTTEDARRWL------GEHSKKTNKEGVIEIVSENIQK--LQRDGTEKLKKDL 340 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 L + + + + + GK DD DHL +R+ G + F+ L Sbjct: 341 LPHIGTDNFESKAQFLGYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLK 400 Query: 470 RVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFM 515 R+ + + +L TL ++ I++ + G+ +Q + Sbjct: 401 RMMKTARAQLQKQLSSNKTLEYAKPLSFPTITSDFTKALGTGNWPQPGGKESRHGVAQVL 460 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 + S + + R+IS+ G +R + R +H T +G +CP ETPEG + GL+ L Sbjct: 461 SRLTFTSALAYLRKISSPVEG----KRKTQKPRQLHNTQWGYICPAETPEGESCGLVKML 516 Query: 576 SVYAQTNEYGFLETP--YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE----EGHF 629 S+ AQ E ++ D I+ + + N N + Sbjct: 517 SLMAQITVALQDEQVDEIKEALDCQYVCNINDCTGEKMNNITKVFLNGVWLKCSEQPQKL 576 Query: 630 VEDLVTCRSKGESSLFSR--DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 +E+L R + V ++ + L N N+++ Sbjct: 577 LEELKNYRKNSTKGKVKKVMSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQ 636 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI------------- 734 + L + G E+ G+++YVDA + Sbjct: 637 SQITELCSRLDNESNGTEKTKF-----WNNFLSKGIIEYVDADEEEMSMIAMFPSDLDNT 691 Query: 735 ------KVNEDEMYPG-EAGI--DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 E++P G+ I + +S +NT M ++G + D Sbjct: 692 EGGSSKNYTHCEIHPALVMGVLGSIIPFPDHNQSPRNTYQCAMGKQAIGVYASNYQLRLD 751 Query: 786 GPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 G + G N VA ++GYN EDS+++++ + Sbjct: 752 SLGHVLFYPQKPLVSTRAAEYVKFGHIPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGL 811 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGE-----AALSKLDESGIVYIGAEVTGGDI 882 F ++ + + ++ ++ N E + K+D GI+ G +V DI Sbjct: 812 FRSMAFKTFSEDAKKSETTELMFFKPSENNSEITEDISKYEKVDVDGILAPGTKVKPDDI 871 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 LV + K +KD SLR +G V V V K Sbjct: 872 LV------------------AGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKY 913 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 R + K S Q G+ R + + + P + + Sbjct: 914 IRVKMRSIRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTV 973 Query: 1003 T 1003 Sbjct: 974 G 974 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 96/437 (21%), Positives = 159/437 (36%), Gaps = 84/437 (19%) Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA 981 G++ + + A + E +L K + + + + + Sbjct: 801 MMNQGSIDRGLFRSMAFKTFSEDAKKSETTELMFFKPSENNSEITEDISKYEK----VDV 856 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 G+ A P D + ++ K + L + E + + Sbjct: 857 DGILAPGTKVKPDDILVAGFYENKNKTLKDCSLRYKPRENGVVDQVVV-----------T 905 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 A K ++V + R Q GDK + RHG KG + EDMP+ G DI++NP Sbjct: 906 NAQSGTKYIRVKMRSIRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPH 965 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 +PSRM +GQ++E LG K+ A++ Q Sbjct: 966 AIPSRMTVGQLVECLLG--------KVGALVGDVQS------------------------ 993 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 TP +I E L G L+ G TG + Sbjct: 994 ---------------------GTPFQKDITVDKIGERLHKLKYQRRGYEALFSGHTGRKL 1032 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + V +G Y +L HLVDDK+H R+TG Y+ +T+QPL G+++ GG R GEME + ++ Sbjct: 1033 DSLVYIGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISH 1092 Query: 1282 GAAYTLQEMLTVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNV 1325 G + L+E L + SD D H + +P + + Sbjct: 1093 GVSSLLKERLFLASDKYQIYVCDKCHMPAVANHKACTFQCSCCKDKTHISKVDIPYACKL 1152 Query: 1326 LLKEIRSLGINIELEDE 1342 L +E+ S+ + + E Sbjct: 1153 LFQELMSMAVCPRIYTE 1169 >UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEV5_CHLKE Length = 1312 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 170/530 (32%), Positives = 244/530 (46%), Gaps = 53/530 (10%) Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 I++S ++ + + + + IT PN+ E ++ + I+ G+ Sbjct: 811 IILSLSQTKKQKSSIKKEYSYSLDNYQRTNQSTCIT-QRPNLKEGDWVQITD--IIADGS 867 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD--SSLRVPNGVSGTVIDVQV 933 GG + +GK AI KD +SL + V Sbjct: 868 ASAGGKLALGK-NVLIAYVPWEGYNFEDAILISDKLLEKDVFTSLHIDYYE---VEVKNT 923 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE---AEKLD 990 +K LEI+ + ++E G + LV Sbjct: 924 QYGLETITNKVPLEIDASSKDILQLQRLNSNGLIEIGSWVEEGDYLVGKISPLSPKGPSI 983 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 ++ + + + L + ++ + + V Sbjct: 984 YKQYEKLYNVIWQRDNPTFKNTSLRVPKGVEGFVLDVQILPPKETDVLPL-APKNAILRV 1042 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 ++ L KR IQ GDKMAGRHGNKG+ISKI P +DMPY +G P+DIVLNPLGVPSRMN+G Sbjct: 1043 RIALLQKRNIQVGDKMAGRHGNKGIISKILPCQDMPYLPDGNPIDIVLNPLGVPSRMNVG 1102 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 QILE+ LG A K + + L + GA+ + + S + + Sbjct: 1103 QILESLLGFAGKYLHESYKIELFDE--------------KFGAEASRSLVYSKLYEASLK 1148 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 L + G+I+L+DGRTGE F++PVTVGY Sbjct: 1149 TANP-------------------------WLFEPQHPGKIKLFDGRTGESFDQPVTVGYA 1183 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 YMLKL HLVDDK+HAR+TG YS VTQQP+ G+A+ GGQR GEMEVWAL+AYGAAYTLQE+ Sbjct: 1184 YMLKLIHLVDDKIHARATGPYSAVTQQPVRGRARNGGQRLGEMEVWALQAYGAAYTLQEL 1243 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LT+KSDD++GR + I + G PESF VLL+E++SL N+++ Sbjct: 1244 LTIKSDDIDGRKEAVFRIYTNRSL-KFGQPESFKVLLRELQSLCFNLQIY 1292 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 162/608 (26%), Positives = 265/608 (43%), Gaps = 34/608 (5%) Query: 154 GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF---EFDPKDNLFVRIDRRRKLPATIIL 210 G+F K K+ K ++ I+ W+ F E D K L + +++ Sbjct: 50 GLFRSLKKKKSFIFRKSIHKLEIV-LFPEWIQFKKPELDSKKALHFGKTYGSYIYIPVLV 108 Query: 211 RALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRIT 270 + + ++ + + + + +P + + N +Y+ T Sbjct: 109 KFSGWKKNKLEWILLGFLPLLTKQGHFIINGIPRVVLHQMI-----RNPGIYILSKDSKT 163 Query: 271 ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES-TGELICAANMELSLDLLAKLSQSG 329 ++ + I + ++ + ++ + + + A ++ L S Sbjct: 164 RVATIRIVPEQGSWINITIDKKYRIWITTRFLRKKISVLIFLQALGFSLSEIYKNLGYSE 223 Query: 330 HKRIETLFTNDLDHGPYISETLRVDPT----NDRLSALVEIYRMMRPGEPPTRE------ 379 ++ + D L + A +Y TRE Sbjct: 224 LLQVSFVKELQPDEKTRNDRILIRANLWRHPVTQKQAQRYLYAHYLEYSSQTREQVVTDQ 283 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 A+ F ++ ++ +GR +F L L+ DDI K + + + Sbjct: 284 TAQEFFLKNVWNYKNRNIGYLGRKQFREKLGSTLSITETWLTADDISLATKASLKLLCNE 343 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL-----------GDLDTLM 488 DDID+L N+R+R GE ++ GL E + + S + T Sbjct: 344 QVADDIDNLDNKRVRGCGEFLYDELNSGLQEFEHVLNRKFSNISISSKNSIFGNECATFW 403 Query: 489 PQD-MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 + + +K IS + K FF LSQFMD+ NPL+E THKRR++ LGPGG++ ++ ++ Sbjct: 404 RFNRSLLSKYISKSWKNFFTGGTLSQFMDETNPLAETTHKRRLTVLGPGGVSGKQTTIQI 463 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HY 605 R +HPT+YGR+CPIETPEG N GL+NS +VY Q N G LETP+ +V G + E+ HY Sbjct: 464 RGIHPTYYGRLCPIETPEGQNAGLVNSFTVYTQRNSQGILETPFFEVYKGQIQKELKAHY 523 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 LS E V+A A+ L + + R + +Q+ + Q++SV Sbjct: 524 LSPQTESYLVLAPADICLSPWNQLPKTDLPVRKNWKFEYTIWNQISKQSIGLLQMISVAT 583 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 SLIPFLEHDDANRALMG+NMQRQAVP LR + LV TG+E V D + + G + Sbjct: 584 SLIPFLEHDDANRALMGSNMQRQAVPLLRPENALVSTGLETRVISDVNHGIRSSKTGYIT 643 Query: 726 YVDASRIV 733 V +++I Sbjct: 644 AVSSTKIQ 651 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 95/330 (28%), Positives = 162/330 (49%), Gaps = 16/330 (4%) Query: 730 SRIVIKVNEDEMYPGEAGID-IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 I++ +++ + + Y+L Y R+NQ+TCI Q P + G+ V+ D++ADG + Sbjct: 809 KNIILSLSQTKKQKSSIKKEYSYSLDNYQRTNQSTCITQRPNLKEGDWVQITDIIADGSA 868 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 + G+LALG+N+ +A++PW GYNFED+IL+S++++++D FT++HI ++T+ G E Sbjct: 869 SAGGKLALGKNVLIAYVPWEGYNFEDAILISDKLLEKDVFTSLHIDYYEVEVKNTQYGLE 928 Query: 849 EITADIPNVGEAA------LSKLDESGIVYIGAEVTGGDILVGKV---TPKGETQLTPEE 899 IT +P +A+ L +L+ +G++ IG+ V GD LVGK+ +PKG + E Sbjct: 929 TITNKVPLEIDASSKDILQLQRLNSNGLIEIGSWVEEGDYLVGKISPLSPKGPSIYKQYE 988 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK----DKRALEIEEMQLKQ 955 KL I+ K++SLRVP GV G V+DVQ+ + K A+ + L Q Sbjct: 989 KLYNVIWQRDNPTFKNTSLRVPKGVEGFVLDVQILPPKETDVLPLAPKNAILRVRIALLQ 1048 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 + + G I +L + D P D L L + N + L Sbjct: 1049 KRNIQVGDKMAGRHGNKGIISKILPCQDMPY-LPDGNPIDIVLN-PLGVPSRMNVGQILE 1106 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 + + + G + + Sbjct: 1107 SLLGFAGKYLHESYKIELFDEKFGAEASRS 1136 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 124/304 (40%), Gaps = 19/304 (6%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 + + R+ + VL +P L+ IQ +SFQ F++ + +F +F + Sbjct: 16 KDQFNRRFYYNDLYVL-IPDLIDIQRNSFQNFLQCGLFRSLKKKKSF--IFRKSIHKLEI 72 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 L + +P D ++ G TY + + + + K K + + +G Sbjct: 73 VLFPEWIQFKKPELDSKKALHFGKTYGSYIYIPV-------LVKFSGWKKNKLEWILLGF 125 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 +PL+T G F+ING RV++ Q+ R+PG++ S KT + RI+P +GSW++ Sbjct: 126 LPLLTKQGHFIINGIPRVVLHQMIRNPGIYILSKDSKT-----RVATIRIVPEQGSWINI 180 Query: 187 EFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 D K +++ R+K+ I L+AL ++ +I + ++ EL P+ Sbjct: 181 TIDKKYRIWITTRFLRKKISVLIFLQALGFSLSEIYKNLGYSELLQVS---FVKELQPDE 237 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 + V + + + LE +V + A + K+ + Sbjct: 238 KTRNDRILIRANLWRHPVTQKQAQRYLYAHYLEYSSQTREQVVTDQTAQEFFLKNVWNYK 297 Query: 306 TGEL 309 + Sbjct: 298 NRNI 301 >UniRef50_Q2I5U8 DNA-directed RNA polymerase (Fragment) n=7 Tax=Fungi RepID=Q2I5U8_9FUNG Length = 1080 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 137/818 (16%), Positives = 253/818 (30%), Gaps = 147/818 (17%) Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMPQDMINAKPISAAVKEFFG 507 +R+ G + + FR ++ + V + L IN+ I+ ++ Sbjct: 1 KKRLDLAGPLLASLFRTFFQKLTKDVGRYFTNCLERSRPFNLNMAINSNTITNGLRYALA 60 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR++ + RE + R +H TH Sbjct: 61 TGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNT----PIGREGKLAKPRQLHNTH 116 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G VCP ETPEG GL+ +L++ + + G P + T+ + +S G Sbjct: 117 WGMVCPAETPEGQACGLVKNLALMSIISV-GSASEPIHEFLSEWTTENLEEISPSTIGPN 175 Query: 615 VIAQANS----NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 N E V+ L T R + D + L + Sbjct: 176 TKVFVNGAWIGIHREPDSLVKTLKTLRRATDIDSEVSVVHDIREN----------ELRIY 225 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 + R L N +Q V + + E A+ G+V+Y+D Sbjct: 226 TDPGRICRPLFVVNENQQLV-LKKEHILKLSEEDEDAI----WGWEKLLINGIVEYLDTE 280 Query: 731 R---IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 ++I ++ D++ + R+ + + G+ + P Sbjct: 281 EEETVMISMSPDDLAEARGALIFDKSLDRDRTAR---LKAR---KPGDYCKTWTHCEIHP 334 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 + LG + + +P+ +N S + + + +++ Sbjct: 335 AMILG-------ICASIIPFPDHNQ--SPRNTYQSAMGKQAMGVYLTNFQLRMDTLANIL 385 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 P V + L + G+ + + I Sbjct: 386 YYPQK--PLVTTRNMQYLRFRELPA------------GQNAIVAIAAYSGYNQEDSLIMS 431 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQIL 967 + A D L V + +E+ +R ++L+Q + L Sbjct: 432 QSAI---DRGLFRSIYYRSYVDAEKKTGFTQLEEFERPTRETTLKLRQ------GSYEKL 482 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 E F + + K LP D E + Q + E Sbjct: 483 EDDGFVAPGTRVNGDDIIIGKTAPLPMDH--------SELGTRTTQTKKDVSTGLKSSEN 534 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + T GD K VK+ + R Q GDK A RHG KG + EDMP+ Sbjct: 535 GIVDHVMVTTNGD-----GYKFVKIRVRSTRVPQIGDKFASRHGQKGTVGMTYRQEDMPF 589 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 G D+++NP +PSRM IG ++E LG + G + +A V ++ + ++ Sbjct: 590 TAEGLTPDLIINPHAIPSRMTIGHLVECLLGKVSSLTGSEGDATPFTDVTVQQISDLLRE 649 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + + Sbjct: 650 CGYQQRGFEVMYNG--------------------------------------------HT 665 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 G+ + + +G Y +L H+VDDK+H Sbjct: 666 GK----------KLSAQIFLGPTYYQRLKHMVDDKIHC 693 Score = 53.7 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 19/26 (73%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRF 1270 +RS G ++T+QP+ G+++ GG RF Sbjct: 1055 SRSRGPLQILTRQPVEGRSRDGGLRF 1080 >UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SSM5_METLZ Length = 637 Score = 335 bits (858), Expect = 8e-90, Method: Composition-based stats. Identities = 117/475 (24%), Positives = 182/475 (38%), Gaps = 59/475 (12%) Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR----A 945 G + AI + +++D+ + V V F E+ + Sbjct: 197 IGSDNRPQGQNFCVAIISYEGYNIEDALIFNKASVERGVGRSHFFRTYEGEERRYPGGQV 256 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP--RDRWLELGLT 1003 IE + L+ V+ V K + EL Sbjct: 257 DRIELPEEDVQGSHGIGSYANLDVDGIINPETVVNEKDVLIGKTSPPRFLEEPTGELIAV 316 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 ++ + + + + + + E ++VKV R + G Sbjct: 317 EKRRDTSITMRSNETGIVDTVIITESENSS--------------RLVKVRTRDLRIPEIG 362 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DK A RHG KGV I P E+MP+ G D+V+NP VPSRM IG +LE G A Sbjct: 363 DKFASRHGQKGVCGLITPQENMPFTAAGIAPDLVINPHAVPSRMTIGHMLEMIGGKAGAL 422 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 G ++NA ++ +V K+ + L D D+ + + Sbjct: 423 EGSRVNATSFRKTQVEKIFDSSFAQNRLLNDKEIGKDVKSSTL----------------- 465 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 +E ++ L +G+ +YDG TG +F+ + +G +Y KL H+V KM Sbjct: 466 ------TREQVLRHQLAEAGFAHTGREVMYDGITGRRFQADIYIGVIYYQKLYHMVSTKM 519 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVN 1299 HARS G ++T+QP G+A+ GG RFGEME + +GAA L+E L +SD V Sbjct: 520 HARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVMIGHGAAMALKERLLDESDAVKQYVC 579 Query: 1300 GRTKM------------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R M E M +F +LL E++S+GI L E Sbjct: 580 ARCGMVAMYDAKQKMTRCLACGAETDIYEVEMSYAFKLLLDEMKSMGIAPRLRLE 634 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 75/431 (17%), Positives = 136/431 (31%), Gaps = 71/431 (16%) Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 +V +D+ F + R G S + Y D S Sbjct: 9 FVDGALIGKVDDAYGFTRNFRQMRRSGHVSTEV--NISYKDYS----------------- 49 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV--TAVAKRGGVVQYVDASR 731 N ++ + R P + + + E V SG G ++++DA Sbjct: 50 ---NEIVINTDRGRARRPLIVVENGVPAVTPEDIEIVRSGAEDFMALVSQGKIEFIDAEE 106 Query: 732 IVIKV---NEDEMYPGEAGIDI------------YNLTKYTRSNQNTCINQMPCVSLG-- 774 E ++ P ++I ++ S + T M +LG Sbjct: 107 EDDLFIAVQESDLTPEHTHLEIDPSLILGIGAAHVPFPEHNASPRVTMGAGMIKQALGFA 166 Query: 775 ------EPVERGDVL--ADGPS--TDLGEL------ALGQNMRVAFMPWNGYNFEDSILV 818 P RG +L A P T EL GQN VA + + GYN ED+++ Sbjct: 167 QANMKLRPDTRGHMLHYAQVPMVHTQAAELIGSDNRPQGQNFCVAIISYEGYNIEDALIF 226 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV------GEAALSKLDESGIVY 872 ++ V+ + + R G + ++P G + + LD GI+ Sbjct: 227 NKASVERGVGRSHFFRTYEGEERRYPGGQVD-RIELPEEDVQGSHGIGSYANLDVDGIIN 285 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 V D+L+GK +P + E + +D+S+ + + +G V V Sbjct: 286 PETVVNEKDVLIGKTSPPRFLEEPTGELI-------AVEKRRDTSITMRSNETGIVDTVI 338 Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + + + + + + K S Q GL + + A L Sbjct: 339 ITESENSSRLVKVRTRDLRIPEIGDKFASRHGQKGVCGLITPQENMPFTAAGIAPDLVIN 398 Query: 993 PRDRWLELGLT 1003 P + + Sbjct: 399 PHAVPSRMTIG 409 >UniRef50_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SHS2_RICCO Length = 1139 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 91/431 (21%), Positives = 162/431 (37%), Gaps = 79/431 (18%) Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 G I ++ + + + A + + +++ ++L+ + ++ + Sbjct: 768 GRCIVMKKYPAIRQKYENGASDRILRPDRTVERE-----RVLDYDGLAAPGEIIKPSDIY 822 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 +K + ++ E + + L+ + E + ++ + Sbjct: 823 VKKECPIDTMGPVKSSAALENIKYRPSPLSYKGPEGESPVIDRVALSSDR---------N 873 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 +KV + RR + GDK + RHG KGV I ED P+ E G D+++NP G PS Sbjct: 874 NNLCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPS 933 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM +G+++E G A G Sbjct: 934 RMTVGKMIELLGGKAGVSCGR--------------------------------------- 954 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 G P I E L +G+ +Y G TG + + Sbjct: 955 ----------FHYGSAFGEPSGHADTVEAISETLVNRGFSYNGKDIIYSGITGCPLQAYI 1004 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 +G +Y KL H+V DKMHAR G ++T+QP G+A+ GG R GEME L AYGA+ Sbjct: 1005 FMGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASM 1064 Query: 1286 TLQEMLTVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKE 1329 + E L + SD + + +G++ +P + +L++E Sbjct: 1065 LIFERLMISSDPFEVQVCRVCGLLGYFNQKLRAGICSTCKNGDNISTMKLPYACKLLIQE 1124 Query: 1330 IRSLGINIELE 1340 ++S+ I L+ Sbjct: 1125 LQSMNIVPRLK 1135 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 116/800 (14%), Positives = 247/800 (30%), Gaps = 87/800 (10%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I+ KV + + + R I +K V A K +++ L Sbjct: 181 GYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLC 240 Query: 311 CAA--NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV---DPTNDRLSALVE 365 + ++ + + + + D + + ++ + AL Sbjct: 241 LNQFVKKIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEY 300 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + A ++ ++F L+ V K N + Sbjct: 301 LDGK--------ENRALTILRDVF-------LANVPVHKNNFRP-----------KCLYV 334 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-----S 480 +++++++ K +DD D++GN+R+ G++ F + V+ + Sbjct: 335 AVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQRTIDTVLTK 394 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQ--LSQF-MDQNNPLSEITHKRRISALG--- 534 I I+ ++ + + +F M + + I++LG Sbjct: 395 QNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMHRKGMTQVLVRLSYIASLGMMT 454 Query: 535 --PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 + R R + P+ +G +CP +TPEG GL+ +L++ E P Sbjct: 455 RVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDDE-EGPLI 513 Query: 593 KVTDGVVTDEIHYLSAIEE---GNYVIAQAN---SNLDEEGHFVEDLVTCRSKGESSLFS 646 + + +++ LS E ++++ +FV + R G+ F Sbjct: 514 SLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQYFVNSMRKLRRAGKIGEFV 573 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 V+ + + S G + L D + + + ++ +R + G+ Sbjct: 574 SVFVNEKQRAV-YLASDGGRVCRPLVIADRGVSRIKEHHMKELRDGVRTFDDFLRDGLIE 632 Query: 707 AVAV-DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQN 762 + V + VA G + E+ P + + +S +N Sbjct: 633 YLDVNEENNALVALYEG--------EATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRN 684 Query: 763 TCINQMPCVSLGEPVERGDVLADG------------------PSTDLGELALGQNMRVAF 804 T M ++G D +L GQN VA Sbjct: 685 TYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 744 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 M ++GY+ ED+I++++ + I +++ + + + G + P+ Sbjct: 745 MSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGASDRILR-PDRTVERERV 803 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 LD G+ G + DI V K P L I + S + P G Sbjct: 804 LDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENIKYRPSPL----SYKGPEGE 859 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 S + V + + + + + + K S Q G + + Sbjct: 860 SPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERG 919 Query: 985 EAEKLDKLPRDRWLELGLTD 1004 L P + + Sbjct: 920 ICPDLIMNPHGFPSRMTVGK 939 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 49/242 (20%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY-SGNSELQYVSY 73 F P+ L V L+ LDSF F+ G++ R+ I S L++ Sbjct: 38 FQLLPEFLKVRGLVKQHLDSFNYFV------NIGIKKIVRANDRIVSTVDPGIYLRFKDV 91 Query: 74 RLGEPV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 R+G P C++ TY+AP+ V + + + +++ +V + Sbjct: 92 RIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTR----VEKNDVVI 147 Query: 125 GEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSD 160 G +P+M G FVI GTE+VI+ Q S Sbjct: 148 GRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 207 Query: 161 KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQ 219 K + + V + + K+ +++ +++ +K+P ++++A+ ++Q Sbjct: 208 DKKGNINASVTSSTEATKSK----TIIQMEKEKMYLCLNQFVKKIPIMVVIKAMGMESDQ 263 Query: 220 IL 221 + Sbjct: 264 EV 265 >UniRef50_Q5RM00 DNA-directed RNA polymerase (Fragment) n=26 Tax=Fungi RepID=Q5RM00_9HOMO Length = 898 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 130/725 (17%), Positives = 236/725 (32%), Gaps = 131/725 (18%) Query: 397 LSAVGRMKFNRSLLREEI-------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 L+ R+++ + +L++E+ EGS ++ +L+ + E+DD DH G Sbjct: 108 LNRDKRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFG 167 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFG 507 +R+ G + FR+ ++ + V L I + ++ +K Sbjct: 168 KKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQKCVETHKEFNINMAIKTQTLTNGLKYSLA 227 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR + L RE + R +H TH Sbjct: 228 TGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRCNT----PLGREGKIAKPRQLHNTH 283 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEG 612 +G VCP ETPEG GL+ +L++ A + G + P + + + S Sbjct: 284 WGMVCPAETPEGQACGLVKNLALMAVISV-GSVSGPVIDFLEEWGLETLEENTQSTNLTK 342 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 +V + + V L T R + D + + G L P Sbjct: 343 VFVNGVWLGVCRDPLNMVNTLRTLRRMQDFDSEVSIVRDIREREIRIYSDAGRVLRPLFI 402 Query: 673 HDDANRALMGANM----------QRQAVPTLRADKPLVGTGMERAVAVDSG--------- 713 +D L ++ +R VP +K V G E + G Sbjct: 403 VEDHKLKLKRQHLRWLQEKWRIEERPYVPREERNKEEVSEG-ETVADEEEGRPIMRDERR 461 Query: 714 --------VTAVAKRGGVVQYVDASR---------------------------------- 731 + R GV++ +DA Sbjct: 462 VKRKKKPFTWSSLIRDGVIELLDAEEEETVMICMTPDDLLESRLLRRGLDPRAEADFNPA 521 Query: 732 -------IVIKVNEDEMYPG---EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 I E++P I + +S +NT + M ++G + Sbjct: 522 ARLKPLPIAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFL 581 Query: 782 VLADGPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 + D + EL GQN VA + ++GYN EDS+++++ + Sbjct: 582 MRQDTMANILYYPQKPLATTRAMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 641 Query: 824 QEDRFTTIHIQELACVSRDTKL----GPEEITADIP-NVGEAALSKLDESGIVYIGAEVT 878 F +++ + + + E+ T D + KL++ G++ G V Sbjct: 642 DRGLFRSLYYRTYMDQEKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVR 701 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 G DI++GK P EE R + +D S + + G V V V T Sbjct: 702 GDDIIIGKTAPIP---PDSEELGQRT----RGHTKRDISTPLKSTEQGIVDQVVVTTNAE 754 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 K + + K S Q G+ R + + P Sbjct: 755 GTKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPS 814 Query: 999 ELGLT 1003 + + Sbjct: 815 RMTIG 819 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 70/355 (19%), Positives = 125/355 (35%), Gaps = 72/355 (20%) Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 +L + + AI + +D S+ + + ++ R ++++KR+ I + Sbjct: 611 ELPAGQNAIVAILCYSGYNQED-SVIMNQSSIDRGLFRSLYYRTYMDQEKRSGAIIVDEF 669 Query: 954 KQAKKDLSEELQI-----LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 ++ +D + ++ LE + + K +P D EE Sbjct: 670 EKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPPD--------SEELG 721 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + ++ + ++ + +T + K VK+ + R Q GDK A Sbjct: 722 QRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAE----GTKFVKIRVRSTRIPQIGDKFAS 777 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KG I EDMP+ G DI++NP +PSRM IG ++E L A +G++ Sbjct: 778 RHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATIVGNEG 837 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 +A DL+ S V+R +G+ + Sbjct: 838 DATPF-------------------------TDLTVDSVSSVLREKGYQSRGLEVMYHGHT 872 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 G K V +G Y +L H+VDDK+ Sbjct: 873 GRKLQ-----------------------------AQVYLGPTYYQRLKHMVDDKI 898 >UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota RepID=B6KTL0_TOXGO Length = 1388 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 110/502 (21%), Positives = 172/502 (34%), Gaps = 62/502 (12%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLR------VPNGVSGTVIDVQVFT---RDG 938 TP + K R I ++ V+ R P+GV+ V + D Sbjct: 872 TPFHSIPFRHDNKAYRLITPQR-PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDA 930 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + +K ++E K + + + + + L D + Sbjct: 931 MILNKGSMERGAFHGCVYKSKVIDAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFP 990 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-------------DLAPG 1045 +G E+ + K + D LA Sbjct: 991 AIGAKIEKGNTYCRVQTSSSSSSFASNGIQHAYKDGETAYVDGVTFISPPDAAHERLAKS 1050 Query: 1046 VLKIVK--VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 LK + + L R+ GDK A RHG KG++S + P EDMP+ E+G DI+ NP G Sbjct: 1051 GLKGCRASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMPFTESGLVPDILFNPHGF 1110 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG ++E+ G AA G +A ++ + G K Sbjct: 1111 PSRMTIGMLIESMAGKAAAVHGAYQDATPFREFPPQSADGKNKWVDQGGYHGWVKRGERY 1170 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 + EE + + + L G LY G G Sbjct: 1171 RTPEEERQAQDEP------------ETPVDYFGKALMRAGYQYYGTEELYSGVYGVPLTA 1218 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + G +Y +L H+V DK R+TG +T QP+ G+ + GG RFGEME AL ++GA Sbjct: 1219 HIFTGLIYYQRLRHMVTDKHQVRATGPVDALTHQPVKGRKRHGGVRFGEMERDALISHGA 1278 Query: 1284 AYTLQEMLTVKSDDVNGRTK-MYKNIVDGNHQME------------------------PG 1318 A LQ+ L SD +I+ + Sbjct: 1279 AALLQDRLLHCSDAHKTFCCPSCGSILTPSAVPNLRGRTAGGKRAVPFCRVCQVPCRLIM 1338 Query: 1319 MPESFNVLLKEIRSLGINIELE 1340 +P F L E+ ++ + I L+ Sbjct: 1339 VPYVFRYLANELAAMNVTIRLK 1360 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 36/306 (11%), Positives = 89/306 (29%), Gaps = 36/306 (11%) Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 V + S + + Y ++ + + +M G +++ R + Sbjct: 830 YEYVELKSSAFL-SIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPF--RHDNKAY 886 Query: 765 IN---QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 Q P V + D + G N VA M + G++ ED++++++ Sbjct: 887 RLITPQRPLVRTEDY----------RRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKG 936 Query: 822 VVQEDRFTTIHIQELACV----SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 ++ F + S + ++ G ++ LD G IGA++ Sbjct: 937 SMERGAFHGCVYKSKVIDAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFPAIGAKI 996 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 G+ +V + + A +G + V V + Sbjct: 997 EKGNTYC-RVQTSSSSSSFASNGIQHA---------------YKDGETAYVDGVTFISPP 1040 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 ++ A + + + I + + +++ E + Sbjct: 1041 DAAHERLAKSGLKGCRASLRLRCVRKPVIGDKFASRHGQKGILSMLWPHEDMPFTESGLV 1100 Query: 998 LELGLT 1003 ++ Sbjct: 1101 PDILFN 1106 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 34/212 (16%) Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 A G +L S D + + KKL ++ GK + +D + + Sbjct: 375 YEAAGTYVIRHFVLPHLSSWSE--KFDMALLMYKKLRLLKQGKISAESLDSFAYQEVVLP 432 Query: 457 GEMAENQFRVGLVRVERAVK------ERLSLGDLD-------TLMPQDMINAK---PISA 500 G++ + + L ++ R+ + + D+ + I+ Sbjct: 433 GQILASVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFDLATDRCCPEIAQ 492 Query: 501 AVKEFFGSSQ-------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 + F + + D+ N ++H R A+ G V Sbjct: 493 KLSYFMATGNIRTTQLDLQQLSGWTVTADRLNVHRFLSHFR---AVHRGQFFTTMKTTSV 549 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 R + +G +CP+ TP+G GL+ L+ A Sbjct: 550 RKLLGETWGFLCPVHTPDGAPCGLLLHLTQSA 581 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 52/179 (29%), Gaps = 62/179 (34%) Query: 31 QLDSFQKFIEQDPEGQYGLEAAFR----------SVFPIQSYSGNSELQYVSYRLGEP-V 79 + SF F+E + P S + +L S +G P Sbjct: 63 HVRSFDSFLEVYLQEMVKDLPVVYVDPSYDPDKHEANPFYSPTDYIKLAISSVSIGAPVR 122 Query: 80 FD--------------------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 FD + C+ +TY APL+V + + Sbjct: 123 FDAAGARLQPGVGGSGDDQLLLPKHCREAHITYGAPLKVSF-------VRSDRRDGAALK 175 Query: 120 QEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPG 154 +EV +G PLM + G F+ING ERVI + + Sbjct: 176 KEVVVGMAPLMVRSKLCSTRGMSPAELQRAGEDVDDGGGYFIINGNERVIRFVVQQRTN 234 >UniRef50_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=281 Tax=cellular organisms RepID=RPC2_HUMAN Length = 1133 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 123/828 (14%), Positives = 254/828 (30%), Gaps = 96/828 (11%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + + I ++ L+ E+L + + G V + R Sbjct: 163 LDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGR 222 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 Y+ +++D + A +E +++ + + + F L Sbjct: 223 F-----YLRHNTLSEDIPI---VIIFKAMGVESDQEIVQMIG--TEEHVMAAFGPSL--- 269 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 E + ++ AL I +R ++ E L+ V + Sbjct: 270 ----EECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKE 325 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 FN +++++I + G +VDD D+ GN+R+ G++ F Sbjct: 326 FNFR-----------AKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLF 373 Query: 465 RVGLVRVERAVKE---------RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF- 514 + +K+ R + D+ M QD I ++A G+ L +F Sbjct: 374 EDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIST---GNWSLKRFK 430 Query: 515 MDQNNPLSEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 MD+ ++ ISALG + R R + P+ +G +CP +TPEG Sbjct: 431 MDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEAC 490 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI--AQANSNL---- 623 GL+ +L++ + P K+ + ++++ L E + N N+ Sbjct: 491 GLVKNLALMTHITT-DMEDGPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVI 549 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 + V R G + F + D G P++ A+ Sbjct: 550 RDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNK 609 Query: 684 NMQRQA----------------VPTLRADKPLVGTGMERAVAVDSGV------TAVAKRG 721 +M+ A + + E + D+ T + Sbjct: 610 HMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCA 669 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G++ Y ++ + M G+ + + R + + P +P+ + Sbjct: 670 GLIPYPHHNQSPRNTYQCAM--GKQAMGTIGYNQRNRIDTLMYLLAYPQ----KPMVKTK 723 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 + + +L GQN VA M ++GY+ ED++++++ + + + C + Sbjct: 724 TI---ELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLK 780 Query: 842 DTKLGPEEITADI-----PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 + LD GI G +V +LV K P Sbjct: 781 RYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPL 840 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 + + KD + + V + + + L + + + Sbjct: 841 EGSNV------PQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIG 894 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 K S Q GL + + P + + Sbjct: 895 DKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGK 942 Score = 318 bits (815), Expect = 8e-85, Method: Composition-based stats. Identities = 92/415 (22%), Positives = 154/415 (37%), Gaps = 70/415 (16%) Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 ++ KR ++ D + I + VE +++ Sbjct: 773 KNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSM 832 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 + + Q QY ++ ++ ++ K+ + ++K+ L Sbjct: 833 PTVTQIPLEGSNVPQ----QPQYKDVPITYKGATDSYIEKVMISSNAED--AFLIKMLLR 886 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 RR + GDK + RHG KGV I P EDMP+ ++G DI++NP Sbjct: 887 QTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPH-------------- 932 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 G ++ K+ E++ Sbjct: 933 --GFPSRMTVGKL--------------------------------------IELLAGKAG 952 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + G F G+K ++ E L G+ + G TGE E + G +Y KL Sbjct: 953 VLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKL 1012 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DKMHAR+ G +++T+QP G+++ GG R GEME L YGA+ L E L + S Sbjct: 1013 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISS 1072 Query: 1296 D----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 D DV G+ H +P + +L +E++S+ I L+ Sbjct: 1073 DAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLK 1127 >UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata RepID=B6KDI3_TOXGO Length = 1332 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 140/997 (14%), Positives = 300/997 (30%), Gaps = 159/997 (15%) Query: 93 SAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRS 152 S V L R VK + ++ + GT R Sbjct: 183 SYNFFVDTELQNILRAPSNRLVKSDVDPSFFI--------EFLNISVGTPRYE------- 227 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR--KLPATIIL 210 G+ + + ++ Y A + +D E+ D + +R +P + Sbjct: 228 EGMILQRLTPRICRTREITYAAPVF------VDAEYSKGDEI-IRRKHVEIGSIPVMLRS 280 Query: 211 RALNYTTEQ------ILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVE 264 R + + + F+ + I ++ L+ E+L + + Sbjct: 281 RVCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVET--------D 332 Query: 265 KGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAK 324 + A + + V D ++ A E +++ Sbjct: 333 MKHNVCATVTSATAESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQM 392 Query: 325 LSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG-------EPPT 377 + G T T + + + + AL+ + +RP P Sbjct: 393 IGAGGALADVTGNTAQEAVSLSLQDCH-TENVLTQQQALLWVGSRIRPKMQAKGFFTPVA 451 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 R A S S AV + E + ++++++D + Sbjct: 452 RGALLSERGGAGRSAKSVVDEAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAAS 511 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL---------------- 481 +DD D+ GN+R+ G++ F R VK++ Sbjct: 512 DPSLMDDKDYYGNKRLELAGQLLSLLFEDLFKRFCTHVKKQADYALSRYHQARGGAGGLG 571 Query: 482 --------GDLDTLMPQDMINAKPISAAVKEFFG-------SSQLSQFMDQNNPLSEITH 526 D +P D+I +A + S +SQ + + + ++ + Sbjct: 572 SRKDEVPYPDCFRNLPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLGM 631 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 RI++ + R R + P+ +G +CP +TPEG + GL+ +L++ Sbjct: 632 MTRINS----QFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDED 687 Query: 587 LETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLDEEGH----FVEDLVTCRSKG 640 TP + + ++ +S E + + N L ++++ R G Sbjct: 688 P-TPISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLGVHRRPRQLMKNIRLLRRHG 746 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA-LMGANMQRQA---------- 689 E F V+ T + S G L L D+ R L+ +M + Sbjct: 747 EVGEFVSVHVNEAH-KTVYIASDGGRLCRPLIVVDSGRPRLLPTHMAQLENGEMCFMDLL 805 Query: 690 ------VPTLRADKPLVGTGMERAVAVDSGV------TAVAKRGGVVQYVDASRIVIKVN 737 + + L+ E + ++ T + G++ + + ++ Sbjct: 806 RSSILEWIDVNEENNLLIALREEDITAETTHLEIDPLTLLGVVAGLIAFPNHNQSPRNTY 865 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 + M G+ + ++ R + + V +P+ + L +L G Sbjct: 866 QCAM--GKQAMGAIAYNQFNRCDTLLYL----LVYPQKPLCKSRTL---DLVHFEQLPAG 916 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP-- 855 QN VA M ++GY+ ED+I+++ V ++ + + G + T P Sbjct: 917 QNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPVA 976 Query: 856 ------------------------NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 L++ G+V +G + + V K +P Sbjct: 977 QASGPGSGKAASGLHRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYVHKFSPTN 1036 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 + + L D+SL P+ + R + ++ Sbjct: 1037 TREHVSDPLQL------------DNSLYAPSFARYKTVVPSYVERVVCTDNSDGCRTYKV 1084 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 ++Q + + G + + A + + Sbjct: 1085 MMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAE 1121 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 133/391 (34%), Gaps = 75/391 (19%) Query: 962 EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL 1021 + LE R+ +L V K + L Sbjct: 1005 RRFEALEDDGVVRVGELLEEDQVYVHKFSPTNTRE------HVSDPLQLDNSLYAPSFAR 1058 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 + D + KV + R + GDK + RHG KGV+ I P Sbjct: 1059 YKTVVPSYVERVVCTDNSD-----GCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAP 1113 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 ED+P+ E+G D+++NP G ++ K+ Sbjct: 1114 AEDLPFAESGWCPDLIMNPH----------------GFPSRMTVGKMM------------ 1145 Query: 1142 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 E++ L+ G F G + E+L Sbjct: 1146 --------------------------ELIAGKSALQVGACQYGTAFGGVGVETLGEILAA 1179 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 SG+ L G TGE + V G +Y KL H+V DK+HAR G L+T+QP G Sbjct: 1180 HGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTEG 1239 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRT------KMYKNIVDG 1311 +A+ GG R GEME L AYG++ L E L + SD V G Sbjct: 1240 RAKEGGLRLGEMERDCLVAYGSSALLMERLMLSSDVFEASVCSTCGLMGYEGWCPYCKSG 1299 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 H MP + +L +E+ S+ + L + Sbjct: 1300 KHVAPIRMPYACKLLFQELMSMNVCPRLHIK 1330 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 87/264 (32%), Gaps = 48/264 (18%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 P L+ ++S+ F++ + + + A + + +++++ +G Sbjct: 167 LPAFFAAKGLVHQHIESYNFFVDTELQN---ILRAPSNRLVKSDVDPSFFIEFLNISVGT 223 Query: 78 PVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 P + + C+ R +TY+AP+ V + I+ + V +G IP Sbjct: 224 PRYEEGMILQRLTPRICRTREITYAAPVFVDAEY--------SKGDEIIRRKHVEIGSIP 275 Query: 129 LMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M G F++ GTE+V++ Q S K Sbjct: 276 VMLRSRVCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVETDMK- 334 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDL 223 H+ + +A S LPA I+LRA+ T ++I+ + Sbjct: 335 HNVCATVTSAT--AESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQM 392 Query: 224 FFEKVIFEIRDNKLQMELVPERLR 247 E V L+ Sbjct: 393 IGAGGALADVTGNTAQEAVSLSLQ 416 >UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bacillariophyta RepID=B7FQD9_PHATR Length = 1147 Score = 325 bits (833), Expect = 6e-87, Method: Composition-based stats. Identities = 104/500 (20%), Positives = 177/500 (35%), Gaps = 98/500 (19%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSS----LRVPNGVSGTVIDVQVFTRDGVEKDK 943 TP P+ KL R + V +S ++ +GT V V + G + + Sbjct: 695 TPAHSLPYRPDNKLYR--LQTPQAPVVQTSIHGEYKMDEYPNGTNAVVAVLSYTGFDMED 752 Query: 944 RALEIEEMQLK---------QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL--DKL 992 + + + L EE ++ A + + V+ +K+ L Sbjct: 753 SVILNKSSVERGFAHASVYKTIDVSLQEEAKMTGASSSGEDVRMKFSNKVKFDKVMYPSL 812 Query: 993 PRDRWLELG--LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 D ++G +T+ + + D E+++ + G+D G V Sbjct: 813 QDDGLPQVGDCMTEGDPLYCVVDSISGMDRAAKHKEREIAYVQSVRALGNDSGKGADNKV 872 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 + L R GDK + RHG KGV+S + P EDMP+ E+G D+++NP PSRM IG Sbjct: 873 SITLRFPRNPVLGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVIINPHAFPSRMTIG 932 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 ++E+ G + G + + FS E Sbjct: 933 MMVESMAGKSGALHG-------------------------------NFQNATPFSFHES- 960 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 D E L+ G LY G +G + + +G + Sbjct: 961 ----------------GDKVSVDYFGEQLQAAGYNYYGSEPLYSGVSGCVMQADLYIGVV 1004 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y +L H+V DK R+TG + +T+QP+ G+ + GG R GEME +L ++G A+ LQ+ Sbjct: 1005 YYQRLRHMVLDKYQVRATGPTNELTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLQDR 1064 Query: 1291 LTVKSDDVNGR-TKMYK------------------------------NIVDGNHQMEPGM 1319 L SD + Sbjct: 1065 LLNCSDKHVAYACCRCGDLLMSATERSTVQTTGQSANEAINKPKIRLYCRSAGSVEPIVL 1124 Query: 1320 PESFNVLLKEIRSLGINIEL 1339 P + L+ E+ ++ + + L Sbjct: 1125 PYVYRYLVNELAAMNVKMRL 1144 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 137/1054 (12%), Positives = 285/1054 (27%), Gaps = 222/1054 (21%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP-------- 78 L + +DSF F EQ G++ + F I + + +P Sbjct: 6 LTAPHVDSFDYFWEQGLA--RGVQDIEPAEFNIVDPQ-----KLRDNPIAKPAKAPGERS 58 Query: 79 -VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 +EC+ R + Y+ GEI + TF Sbjct: 59 QKLLPRECRERKLVYA-------------------------------GEI-----SATF- 81 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 + R GV F P R L+ F Sbjct: 82 -------CYRMIQRRNGVDF--------------------PSRPVRLNKTFG-------- 106 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFD 254 +P ++ + + L K + + L+ + Sbjct: 107 -----DMPIMVMSKGCHLEGTTPKQLVKLKEEDNEFGGYFIVGGIERCVRLLQVPRRNHA 161 Query: 255 IEANGKVYVEKGRRIT--ARHIRQLEKDD-VKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 Y +G T +R + + I V Y+ ++ Sbjct: 162 TAIQRSSYKNRGNTYTDLGVAMRCARHNGDMSAITNTVHYLTTGGANLKFV--------- 212 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 A E + + L +T + G + L A + Sbjct: 213 AKKQEFLIPAILILRALSGSESQTELYERIVQGDQSNTFLVARAGLLLQDARARFGSLNT 272 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 P E F L + +G R +L L + ++ +++K Sbjct: 273 PDECLAFIGTR--FRRLSQKAETTSDVEIGHHIIRRFVLIHLPTYRDKL--ECLLLMLRK 328 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD 491 L G VD+ D L N+ I G + + +++ L Sbjct: 329 LYAFAAGDCGVDNADSLQNQEILLPGHLMCTFIKEKFEEFLSSLRLALLSDLRKDFARTS 388 Query: 492 MI-----------------NAKPISAAVKEFFGSSQLSQ--------------FMDQNNP 520 + I V+ F + + ++ N Sbjct: 389 AKLTDAKYWGKMVDRHAGKASGGIGKKVQHFLSTGNIVSTSGLDLMQVSGYTIVAERLNF 448 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L H R ++ G E VR + P +G +CP+ TP+G GL++ L++ ++ Sbjct: 449 LRYCAHFR---SVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHLALKSK 505 Query: 581 T-------NEYGFLETPYRKVT-------------DGVVTDEIHYLSAIEEGNYVIAQAN 620 + G ++ ++ DG + +L +G V + Sbjct: 506 VMAYPSRLDAKGMIDLDDLLLSLGVTPCGAGSRNGDGRIGSTHLHLPVSIDGRIVGGASP 565 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM-------DVSTQQVVSVGASLIPFLEH 673 S L L + + +V + + + A L+ + + Sbjct: 566 SVL---KIIAAHLRKLKVDNPPVVPPTLEVGLVPPGNPGAPYPGLYLFTCAARLVRPVLN 622 Query: 674 DDANRALMGANMQRQAVPTLRADKPLV-GTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 + +++ + D+ + G + + + ++ + + D ++ Sbjct: 623 RASGHTEFIGPLEQGYMDIACLDEDIREGITTHQELDPTNM---LSLIANLTPFSDQNQS 679 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + + +M G ++L R + Q P + + G+ D Sbjct: 680 PRNMYQCQMGKQTMGTPAHSLPY--RPDNKLYRLQTPQAPVVQTSIHGEYKMD------- 730 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT------KLG 846 E G N VA + + G++ EDS+++++ V+ + + ++ Sbjct: 731 EYPNGTNAVVAVLSYTGFDMEDSVILNKSSVERGFAHASVYKTIDVSLQEEAKMTGASSS 790 Query: 847 PEEITADIPNVGEAA---LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 E++ N + L + G+ +G +T GD L V Sbjct: 791 GEDVRMKFSNKVKFDKVMYPSLQDDGLPQVGDCMTEGDPLYCVVDSISGM---------- 840 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 D + + V V+ D + + I + Sbjct: 841 -----------DRAAKHKEREIAYVQSVRALGNDSGKGADNKVSITLRFPRNPVLGDKFS 889 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 + + G+ S + + + P Sbjct: 890 SRHGQKGVLSILW---PQEDMPFSESGISPDVII 920 >UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophyta RepID=Q9LK40_ARATH Length = 1172 Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 167/986 (16%), Positives = 322/986 (32%), Gaps = 196/986 (19%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 D L+S QL+S+ FIE GL+ F+S + L EP Sbjct: 41 SFFDKYGLISHQLNSYNYFIEH------GLQNVFQSFGEM---------------LVEPS 79 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 FDV + + Y+ ++ + + + ++ + + MT + +N Sbjct: 80 FDVVKKKDNDWRYATVKFGEVTVEKPTFFSDDKELEFLPWH----ARLQNMTYSARIKVN 135 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 V + + +S F+ + + +I Sbjct: 136 VQVEVFKNTVVKS-------------------------------DKFKTGQDNYVEKKIL 164 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG 259 +K I++ ++ + IL EK + + + F I+ Sbjct: 165 DVKKQ--DILIGSIPVMVKSILCKTSEKGKENCKKGDCAFD--------QGGYFVIKGAE 214 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIE-----VPVEYIAGKVVAKDYIDESTGELICAAN 314 KV++ + + T R V + ++ A+DY + + Sbjct: 215 KVFIAQEQMCTKRLWISNSPWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLS 274 Query: 315 MELSLDLLAK-LSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL--------SALVE 365 E+ + LL L S K L D D + + D + +AL Sbjct: 275 TEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTY 334 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + + ++ + P E+ + L S + Sbjct: 335 VEQQIKSTKFPPAESVDECL----------------------HLYLFPGLQSLKKKARFL 372 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL----VRVERAVKERLSL 481 ++K L++ GK + ++ D N+RI GE+ E + RV L ++ RA+++ LS Sbjct: 373 GYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLS- 431 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKR 528 GD D + ++A I+ + F + S + + NPL + R Sbjct: 432 GDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLR 491 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R + + R HP+H+GRVC + TP+G N GL+ ++S+ + LE Sbjct: 492 R----TRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQ-SLE 546 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD----EEGHFVEDLVTCRSKGESSL 644 + K+ +E+ + N + + FV +L + R + E Sbjct: 547 SVVEKLFAC-GMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPR 605 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD-------- 696 + D D + ++ + L+ L + + L + L Sbjct: 606 EMEIKRD-KDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGI 664 Query: 697 -----------------KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 +P + T E ++ GV+ VV + + + + Sbjct: 665 EEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSCA-----VVPFANHDHGRRVLYQS 719 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 + + I + R + + P L LA L GQN Sbjct: 720 QKHCQ-QAIGFSSTNPNIRCDTLSQQLFYPQKPL------FKTLA-SECLKKEVLFNGQN 771 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR-----DTKLGPEEITADI 854 VA GYN EDSI++++ ++ F + I+ K E + Sbjct: 772 AIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGK 831 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 + + L++ G +IGA ++ GDI++G+ T G Sbjct: 832 THSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESG----------------------A 869 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVE 940 D S+++ + G V V + + D + Sbjct: 870 DHSIKLKHTERGIVQKVVLSSNDEGK 895 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 90/436 (20%), Positives = 164/436 (37%), Gaps = 74/436 (16%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV--EAEKLDK 991 + ++ +A M + + E+ ++ ++ ++ G + K+D Sbjct: 782 YNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDS 841 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 L D + +G + + E +K + ++ ++ ++ D+ Sbjct: 842 LEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDE----GKNF 897 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V L R GDK + HG KGV+ + ++ P+ G DIV+NP PSR Sbjct: 898 AAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTP 957 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+LE L I ++++ A + + A Sbjct: 958 GQLLEAALSKG-------IACPIQKEGSSAAYTKLTRHA--------------------- 989 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 F EI E L G R+Y+GR+GE + +G Sbjct: 990 ---------------TPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGP 1034 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E Sbjct: 1035 TFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHE 1094 Query: 1290 MLTVKSD----DVNGRTK-------------------MYKNIVDGNHQMEPGMPESFNVL 1326 L SD + + K + V +H + +P +L Sbjct: 1095 RLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLL 1154 Query: 1327 LKEIRSLGINIELEDE 1342 +E+ S+GI + + + Sbjct: 1155 CQELFSMGITLNFDTK 1170 >UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit RPA2 n=10 Tax=Ascomycota RepID=RPA2_SCHPO Length = 1174 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 109/514 (21%), Positives = 178/514 (34%), Gaps = 111/514 (21%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA--SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 TP + + KL R G+ ++ + + +GT V V + G + + Sbjct: 713 TPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAM 772 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL-------VAGGVEAEKLDKLPRDRWL 998 + + + + + + R + E L KL D Sbjct: 773 ILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLP 832 Query: 999 ELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 +G+ E+ E + + E H E + R + G+D+ + + V L Sbjct: 833 FIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLL--GNDVGDSECQQIHVKL 890 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 + R GDK + RHG KG+ S+ P DMP+ E+G DI++NP PSRM IG +E Sbjct: 891 RITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIE 950 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 + G A G D + F E A Sbjct: 951 SLAGKAGACHG-------------------------------LAQDSTPFIYSEQQTAA- 978 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 E L G +Y G TG++ + + +G +Y + Sbjct: 979 ------------------DYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQR 1020 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+V DK R+TG +T+QP+ G+ + GG RFGEME A+ +G ++ +Q+ L Sbjct: 1021 LRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNC 1080 Query: 1295 SDDVNG---------------------------RTKMY-------------------KNI 1308 SD R + K Sbjct: 1081 SDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCAKPALGLEDTSDIWQDGSGKKF 1140 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 V G + +P FN L E+ ++ I + LE + Sbjct: 1141 VGGTNTTLIALPSVFNYLTAELTAMNIKMMLEVK 1174 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 103/746 (13%), Positives = 220/746 (29%), Gaps = 105/746 (14%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + +L K E + + + +R + Sbjct: 140 IPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRP 199 Query: 264 EKGRRITARHIRQLE----KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 R T+ L + D + + Y+ V + LI S+ Sbjct: 200 SFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLI------PSM 253 Query: 320 DLLAKLSQSGHKRIETLFTNDL-------DHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 +L L ++ K I D + + + L + R Sbjct: 254 MILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFR- 312 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 L +ED D+ VGR + +L E ++ +++KL Sbjct: 313 -------------VVLGVAEDLTDVE-VGRFLLQKVVLVHLREA--KDKFRLLLFMIRKL 356 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL----------- 481 + G+ D+ D ++ I G + + + +++ +++L Sbjct: 357 YALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDF 416 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ--------------FMDQNNPLSEITHK 527 D L I ++ F + L ++ N ++H Sbjct: 417 SDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHF 476 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 R + G E VR + P +G +CP+ TP+G GL+N L+ + + Sbjct: 477 RMV---HRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSD 533 Query: 588 ETPYRKVTDGVVTDEIHYL------SAIEEGNYVIAQANSNLDEEGHFVEDLV------- 634 + + + D + ++ ++ L + V L+ Sbjct: 534 VSQIPSLLLSLGVDPPSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVK 593 Query: 635 --------TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 + + + + S A ++ ++H M + Sbjct: 594 LRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPVKHISTGELDMLGPFE 653 Query: 687 RQAVPTLRADK---PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 + + K P V T +E S ++ + + D ++ + + +M Sbjct: 654 QVYMDIACFPKEIVPKVSTHVE-----YSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGK 708 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 G L R++ Q + P L + D G N VA Sbjct: 709 QTMGTPGTALRY--RTDNKLYRLQTGQTPVVRPK-----LHNTYGLDH--YPNGTNAVVA 759 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI-----PNVG 858 + + GY+ ED++++++ + + + + E + Sbjct: 760 VISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPR 819 Query: 859 EAALSKLDESGIVYIGAEVTGGDILV 884 L KLD G+ +IG ++ GD +V Sbjct: 820 REWLQKLDADGLPFIGIKLEDGDPIV 845 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 63/464 (13%), Positives = 141/464 (30%), Gaps = 80/464 (17%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIE--------QDPEGQYGL 49 M + E++R K+ K P L + +DSF ++ + Sbjct: 1 MSFQTLERERTFKNPPK--DGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAF 58 Query: 50 EAAFRSVFPIQSYSGNSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLR 97 ++ + + + ++ +P E + R TY + Sbjct: 59 DSITQEEGGALKFGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKS--- 115 Query: 98 VKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN------------------------ 133 RLV+ + G + + +EV G IP+M + Sbjct: 116 ---RLVLKFSWSVNGGPRQSEMREV--GMIPIMVRSNRCHLEGLSPAELIAHKEESEEMG 170 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------F 186 G F++NG E++I + + + ++ Y+ + R D Sbjct: 171 GYFIVNGIEKLIRMLILPKRNH-PTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTL 229 Query: 187 EFDPKDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 + R R+ +P+ +IL+AL T++ FE ++ + N + V Sbjct: 230 HYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSD---KEIFEGIVGKDLGNTFLTDRVE 286 Query: 244 ERLRGETASFDIEANGKVYV-EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 LR + + R+ L +V + + AKD Sbjct: 287 LMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLREAKD-- 344 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 L+ +L + + + ++ G ++ + + D L++ Sbjct: 345 ---KFRLLLFMIRKLYALVAGECCADNPDSPQH---QEILLGGFLYGQILKEKIEDWLNS 398 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + + P + ++ + FS+ D+ + + Sbjct: 399 IRAQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLS 442 >UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SSB7_ENCCU Length = 1062 Score = 324 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 108/526 (20%), Positives = 203/526 (38%), Gaps = 86/526 (16%) Query: 841 RDTKLGPEEITADIP---NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 + E++ +I G+ ++D+SGI+ I + + P + +P Sbjct: 596 EEWIGIMEQVFLNIDTEEGAGDGDYYEIDKSGILGI----------IAGLIPYSDHNQSP 645 Query: 898 EE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 ++ + G A +++ D ++ N + ++ + + + V+ + Sbjct: 646 RNMYQCQMAKQAIGHPAHNIRTRTDPTMYTVNYLQSPIVRTEGY--EMVKDYPVGINCMV 703 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 L D+ + L I + I L G V + L + + + ++ + Sbjct: 704 AVLSYTAYDMEDALVINKNS----IDRGLFTGYVYKTEKVPLDKGYFFTYLPSVGQRIQK 759 Query: 1011 LEQLAEQYDELKHEFEKKL------EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + L D+ E+EK+ ++ + D + + + R GD Sbjct: 760 DDTLYRYVDQDGREYEKRYLGTEPGIVDIVRVFENDM----GERCATFTIRIVRSPMIGD 815 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 K + RHG KGV S P DMP+ E+G DI++NP PSRM IG ++E+ G Sbjct: 816 KFSSRHGQKGVCSMHWPGIDMPFTESGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLS 875 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G++ + + ++ + + E Sbjct: 876 GNEQDGTVFKKSFLLEQEEGDDEKVR---------------------------------- 901 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 ++ + L+ G +Y G G +F + VG +Y +L H+V DK Sbjct: 902 ------RKEYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQ 955 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD-VNGRTK 1303 R+ G+ T+QP+GG+ + GG RFGEME AL ++GA+Y LQ+ L SD V Sbjct: 956 VRTKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDRLLKSSDSTVFEYCG 1015 Query: 1304 MYKN---------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ I + MP F L E+ ++ I ++++ Sbjct: 1016 TCRSILFTNNGDCICGSSDLKAVEMPYVFKYLCCELLAMNIKVQID 1061 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 112/799 (14%), Positives = 220/799 (27%), Gaps = 138/799 (17%) Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGK---VLYNARIIPYRGS---WLDFEFDP 190 ++ G ++IV ++H +P F SDK + R + Y+G + D Sbjct: 45 LVKGKTKIIVEEIHVAPP--FLSDKDHISVDRRLLPRECRERGLTYKGKMVVRVSLFHDN 102 Query: 191 KDNLFVRIDRR-RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 K V D+ P + + + + E D Sbjct: 103 KHV--VTEDKSAGHFPIMVRSTLCHLNGIKNKNEVGE-------DEDEIGGYFIINGIDR 153 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 F+I R V + V + I D + Sbjct: 154 FIRFNIMQKRNHIFAFKMRKKTSFFSDY---MVSMRCVGRDEIGHMNFLHYCTDGNVVIK 210 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTN--DLDHGPYISETLRVDPTNDRLSALVEIY 367 I E L+ L + E LF ++ + R L I Sbjct: 211 IFHKKYEFLFPLVLVLKALVNTTDEELFGALGGGQRAVHLLKCFAEHNVFSRTECLDYIG 270 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 ES E +Y +S + S + + +I Sbjct: 271 SRF-----SAILNFESKAEVAEEILSKYVVSHL---------------SSNLDKFNFLIL 310 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA------------- 474 +KL + + DD D N + + ++ + R + R Sbjct: 311 AARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIEEFMRFFSMMCRKTYYKLE 370 Query: 475 ----------------VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS--------- 509 ++ L + + + + IN I ++ F S Sbjct: 371 GEKRKLEGDSVTESGFCEDELDISKIREIFKRTSIN---IGQRMELFLSSGSITLTSCSD 427 Query: 510 -----QLSQFMDQNNPLSEITHKRRIS--ALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 562 S ++ N ++H R ++ P +T +R + P +G +CP+ Sbjct: 428 ILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSMVT------SIRKLRPESWGFLCPVH 481 Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 622 TP+G G++ ++ A+ GVV + Sbjct: 482 TPDGAPCGVLLHMAKEAEVVSRDDDFNTDILFEFGVVPS------------IRGVEMGIP 529 Query: 623 LDEEGHFVEDLVT----CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 + G V + R E + ++ + S ++ S+ F R Sbjct: 530 VLVNGRVVGSTSSPSDLTRMVREYRNRNGLMIEVVYTSEPKMF---PSVCIFSSVGRFAR 586 Query: 679 ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA----KRGGVVQYVDASRIVI 734 +M + + + L E A D + G++ Y D ++ Sbjct: 587 KVMNRRLGSEEWIGIMEQVFLNIDTEEGAGDGDYYEIDKSGILGIIAGLIPYSDHNQSPR 646 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTC---INQMPCVSLGEPVERGDVLADGPSTDL 791 + + +M G +N+ TR++ Q P V +G Sbjct: 647 NMYQCQMAKQAIGHPAHNIR--TRTDPTMYTVNYLQSPIV-----------RTEGYEMVK 693 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD-TKLGPEEI 850 +G N VA + + Y+ ED++++++ + FT + Sbjct: 694 D-YPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTEKVPLDKGYFFTYLPS 752 Query: 851 TADIPNVGEAALSKLDESG 869 + +D+ G Sbjct: 753 VGQRIQKDDTLYRYVDQDG 771 >UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepID=B3RKF5_TRIAD Length = 780 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 105/491 (21%), Positives = 177/491 (36%), Gaps = 95/491 (19%) Query: 886 KVTPKGETQLTPEE----KLLRAIFGEKASDVKDSSLRVPNGVSGT-VIDVQVFTRDGVE 940 ++TP + +P ++ + G K S + G + D + + VE Sbjct: 351 RLTPFSDFNQSPRNMYQCQMGKQTMGTPIQSFKYRSDNKLYRIQGYDMEDAMILNKSSVE 410 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 + I + ++ ++ L+I + LD LP+ + Sbjct: 411 RGFAHATIYKSEVINLNSKTADGLEI--------FGQTPGTTDSDNIDLDGLPK---IGS 459 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 L + L+ + + ++ G D L+ + V ++R Sbjct: 460 ILNSGDPYYCTLNLSTSQCVVHYYRGQEQGIVDDVKLLGSDSGRKPLQRICVKFRIERNP 519 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 GDK + RHG KGV S++ PIE+MP+ E+G DI+ NP G PSRM IG ++E+ G + Sbjct: 520 IIGDKFSSRHGQKGVCSQLWPIENMPFTESGMTPDILFNPHGFPSRMTIGMMIESMAGKS 579 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 A G D + F E + Sbjct: 580 ASLHG-------------------------------LCHDATPFQFSEKVSA-------- 600 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 + L+ G R+YDG +GE+FE + +G +Y +L H++ Sbjct: 601 -----------VDYFGKYLEKAGYNYFGTERMYDGMSGEEFEANIFIGTVYYQRLRHMIS 649 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 DK R+TG +T+QP+ G+ + GG RFGEME AL ++G ++ LQ+ L SD Sbjct: 650 DKFQVRTTGPIDSLTRQPVQGRKRAGGVRFGEMERDALISHGTSFLLQDRLLNCSDKSVA 709 Query: 1301 RTKM-----------------------------YKNIVDGNHQMEPGMPESFNVLLKEIR 1331 + +P + L+ E Sbjct: 710 HVCKKCGSVLGITTDVNKNEADIFREFSRKVYRCTTCDSTQEVTKMYLPYVYLYLVTEFA 769 Query: 1332 SLGINIELEDE 1342 +L I +E E Sbjct: 770 ALNIKAVIEVE 780 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 78/511 (15%), Positives = 165/511 (32%), Gaps = 74/511 (14%) Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM- 459 + N + +I +++KL + NG+ +++ D N+ I G M Sbjct: 3 NCLFNNLRNCIAVHLDRNEDKFNLLIYMIRKLYAVANGECQIESQDSPMNQEILLGGHMY 62 Query: 460 ---AENQFRVGLVRVERAVKERLSLGD---LDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 + + + L RV+ + + ++ + L+ + + N I ++ F + L Sbjct: 63 SMVLKEKLELWLSRVKNLILKYMAKTNDEKLENAIVRAANNGTNIPNQLEYFLATGNLVA 122 Query: 514 --------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 D+ N + ++H R ++ G E VR + P +G +C Sbjct: 123 RADLGLMQVAGYVLVADRLNFMRFVSHFR---SVHRGSFFTEMRTTAVRKLLPEAWGFLC 179 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE-----IHYLSAI--EEG 612 P+ TP+G GL+N L+ + T + I Y SA Sbjct: 180 PVHTPDGAPCGLLNHLAASCKVVTKMSDTTKLVSTLYELGMLSLSDPLIEYSSAHVVILD 239 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 ++ + + L + + ++ + + + L F Sbjct: 240 GKIVGY--IQKEIGKEIADKLRYLKINNMDMVDPSTEIALVHDG---ISGLYNGLYLFTS 294 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 R + +Q+Q + G V +D +TA V Sbjct: 295 PARMIRPVTNLRLQKQEMI-----------GTFEQVFMDICITAEEAYAEVTT------- 336 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 +++ M + + + +S +N QM ++G P++ +D Sbjct: 337 HQELSPCSMLSA--LARLTPFSDFNQSPRNMYQCQMGKQTMGTPIQSFKYRSD------- 387 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 N GY+ ED++++++ V+ + EI Sbjct: 388 ------NKLYRI---QGYDMEDAMILNKSSVERGFAHATIYKSEVINLNSKTADGLEIFG 438 Query: 853 DIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 P ++ +D G+ IG+ + GD Sbjct: 439 QTPGTTDS--DNIDLDGLPKIGSILNSGDPY 467 >UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomycetales RepID=C4QY42_PICPG Length = 1165 Score = 322 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 97/467 (20%), Positives = 153/467 (32%), Gaps = 111/467 (23%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ + ++++ + I + F Sbjct: 756 MDDAMIINKSSDERGFGYGTMYKVEVIDLADSRRKGDPITQHFGFG-------TDEWPES 808 Query: 988 KLDKLPRDRWLELGL----TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 L D +G D + L + + H E + + I+ DDL Sbjct: 809 WKQNLDEDGLPAIGTLVNEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLIS--DDLG 866 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 L++V + + R+ Q GDK + RHG KGV S+ P DMP+ E G D+++NP Sbjct: 867 DSELQMVTIKYRITRQPQIGDKFSSRHGQKGVCSRKWPQIDMPFTETGIQPDVIINPHAF 926 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG +E+ G A G ++ + E Sbjct: 927 PSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNE-------------------------- 960 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 D E L G +Y G TGE+ Sbjct: 961 ------------------------DDTPADFFGEQLISAGYNYHGNEPMYSGVTGEELRA 996 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G Sbjct: 997 DIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRNGGIRIGEMERDALIGHGT 1056 Query: 1284 AYTLQEMLTVKSDDVNGRTKM----------------------YKNIVD----------- 1310 A+ LQ+ L SD + Sbjct: 1057 AFLLQDRLLNCSDYTQTSICKGCGSLLNTQTSVPRIGTKAMIHCRRCSTKINDVTAGTTD 1116 Query: 1311 ---------------GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 GN +P L E+ ++GI + E Sbjct: 1117 DMDLWEDGQGNRYTGGNDTTTVAIPFVLKYLDSELSAMGIRMRYNVE 1163 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 128/932 (13%), Positives = 282/932 (30%), Gaps = 104/932 (11%) Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER---LRGETASF 253 I ++P + + +L K + + + + L + + Sbjct: 133 EIREAGQIPVMLKSNRCHLEKMSPNELVKNKEESDELGGYFIVNGIEKLVRMLIVQRRNH 192 Query: 254 DIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + +G T IR + D V G V + ++ + Sbjct: 193 PMALIRPSFGNRGDSYTQFGIQIRAVRPDQTSQTNVLHYLKDGNVTFRFSWRKNEYLVPV 252 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 ++ ++ + G ET + D + + + L + R Sbjct: 253 PMILKALVETNDREIFDGIVGSETSNSFLTDRLELLLRNYKHYKLVSKQETLAYLGDKFR 312 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 D+S V K + ++ +++K Sbjct: 313 -----------------VVFNATPDVSDVDVGKEVLRRIVLVHLPDNRDKFRLLLFMIRK 355 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-------DL 484 L + +G D+ D ++ + G + + + +++ ++ + Sbjct: 356 LYALVSGDCCPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLASIRLQIQTDINRGYPVNF 415 Query: 485 DTLMPQDMINAKP---ISAAVKEFFGSSQL-SQ-------------FMDQNNPLSEITHK 527 D + + I ++ F + L SQ ++ N I+H Sbjct: 416 DEPKYMSRVFQRINENIGKKLQYFLSTGNLVSQTGLDLQQVSGYTVVAEKINFYRFISHF 475 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 R + G E VR + P +G +CP+ TP+G GL+N L+ + + Sbjct: 476 RMV---HRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKISTEESD 532 Query: 588 ETPYRKVTDGVVTDEIHYLSA------IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 + KV + H +A ++ ++ ++ + L + +G Sbjct: 533 VSKVPKVLSKLGVSANHVFAAGPQMCCVQLDGKIVGW--CTHEQAKIVADTLRFWKVEGG 590 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPL 699 + +V ++ L F R + + ++ + P +A + Sbjct: 591 HGIPLDLEVGHV---PPSSRGQYPGLYLFGGRARMTRPVRYLPLDKEDIIGPFEQAYINI 647 Query: 700 VGTGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 T E V S ++ + + D ++ + + +M G L Sbjct: 648 AVTPEEIESNVHSHVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALV 707 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 RS+ Q P+ + + L D D G N VA + + GY+ +D Sbjct: 708 --HRSDNKLYRLQTGQ----TPIVKAN-LYDDYGMDN--FPNGTNAVVAVISYTGYDMDD 758 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT----ADIPNVGEAALSKLDESGI 870 ++++++ + + D++ + IT E+ LDE G+ Sbjct: 759 AMIINKSSDERGFGYGTMYKVEVIDLADSRRKGDPITQHFGFGTDEWPESWKQNLDEDGL 818 Query: 871 VYIGAEVTGGDILVG-----------KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 IG V GD +V K E E KL+ G+ + +++ Sbjct: 819 PAIGTLVNEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLISDDLGDSELQMV--TIK 876 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR--IRA 977 + D F+ +K + + ++ + + + ++ I SR I Sbjct: 877 YRITRQPQIGDK--FSSRHGQKGVCSRKWPQIDMPFTETGIQPDVIINPHAFPSRMTIGM 934 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 + + +A L + +D D+ + + H E Sbjct: 935 FVESLAGKAGALHGIAQDSTPWKFNEDDTPADFFGEQLISAGYNYHGNEPMY-----SGV 989 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 G++L + V Y ++ DK R Sbjct: 990 TGEELRADIYIGVVYYQRLRH--MVNDKFQVR 1019 Score = 60.2 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 56/396 (14%), Positives = 122/396 (30%), Gaps = 72/396 (18%) Query: 28 LSIQLDSFQKF-------IEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP-- 78 ++ + SF + G + F S P + + +++ + +L +P Sbjct: 31 VAPHIGSFNALTDGLNGGLLNLAVKDIGAKTIFDSNDPSRLGNK-LKIRVDAVQLAKPSV 89 Query: 79 ----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 EC+ R +TY + +K+ + + +I+E G+IP Sbjct: 90 AVGDKLSVNRKTLPSECRERMITYKSRFMLKVCWSVNDGPEET----EIREA----GQIP 141 Query: 129 LMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M + G F++NG E+++ + + + + Sbjct: 142 VMLKSNRCHLEKMSPNELVKNKEESDELGGYFIVNGIEKLVRMLIVQRRNHPMALIR-PS 200 Query: 165 HSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRRK---LPATIILRALN 214 + Y I R D + N+ R R+ +P +IL+AL Sbjct: 201 FGNRGDSYTQFGIQIRAVRPDQTSQTNVLHYLKDGNVTFRFSWRKNEYLVPVPMILKALV 260 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 T + F+ ++ N + + LR + + + + Sbjct: 261 ETND---REIFDGIVGSETSNSFLTDRLELLLRNYKHYKLVSKQETLAYLGDKFRVVFNA 317 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL--SQSGHKR 332 DV ++V E + V+ + L+ +L + + Sbjct: 318 TP----DVSDVDVGKEVLRRIVLVHLPDNRDKFRLLLFMIRKLYALVSGDCCPDNPDATQ 373 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + + +G I E + + RL +I R Sbjct: 374 HQEVLLGGFLYGMIIKEKIEEYLASIRLQIQTDINR 409 >UniRef50_A5H2B2 DNA-directed RNA polymerase (Fragment) n=3 Tax=Leotiomyceta RepID=A5H2B2_9LECA Length = 717 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 137/831 (16%), Positives = 245/831 (29%), Gaps = 144/831 (17%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAKPISA 500 DD DH G +R+ G + N FR ++ + V+ L + + + + I+ Sbjct: 1 DDRDHFGKKRLDLAGPLLANLFRTLFNKLNKDVERYLKNCIENNREFNLTLGVKSTHITN 60 Query: 501 AVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +K + SQ +++ S ++H RR + + R+ + Sbjct: 61 GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNT----PIGRDGKIAKP 116 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R +H TH+G VCP ETPEG GL+ +L++ + +E + + + Sbjct: 117 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVSVGAPIEGVVDFLFQRQ-MESLEEYD 175 Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTC----RSKGESSLFSRDQVDYMDVSTQQVVSV 663 + + N LV R K + D D + + Sbjct: 176 PLTSPHATKIFVNGVWVGVHRSPAALVNAVQDLRRKQVIAYEVSLVRDIRDREFKILTDQ 235 Query: 664 GASLIP-FLEHDDANRALMG-ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 G L P F+ +D + G + + + L +D+ + + + Sbjct: 236 GRVLRPLFVVENDPKSPICGDLVLNKGHIEKLESDRDIPLDIDKEERVKKTYGWHGLVNE 295 Query: 722 GVVQYVDASR-----IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 GVV+YVDA IV+ + + Y L + N + Sbjct: 296 GVVEYVDADEEETVMIVMTPYDLNVSRQVQA--GYALPEDNDDP-----NARVKAPINPT 348 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 PS LG + V+ +P+ +N S + + + + + Sbjct: 349 AHTWTHCEIHPSMILG-------VCVSIIPFPDHNQ--SPRNTYQSAMGKQAMGVFLTNY 399 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 P ++ L +L Sbjct: 400 DQRMETMAHILYYPQK--PLATTRSMEFL-------------------------KFRELP 432 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955 + + AI + +DS + + + G + E IE+ + Sbjct: 433 AGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSPFFRSYSDQEGRIGLNVIEQFEKPM 492 Query: 956 AKKDLSEE---LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 + + + L+ A + + K + D ELG + ++ + Sbjct: 493 RSNTMKLKHGTYEKLDDDGLIIPGARVSGEDIIIGKTAPITADAE-ELGQGIKIRERRDA 551 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 + E K VKV + + Q GDK A RHG Sbjct: 552 STPLRSTESGLV-----------DQVALTTNAEGHKFVKVRMRTTKIPQIGDKFASRHGQ 600 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KG I EDMP+ G DI I+ H + I I L Sbjct: 601 KGTIGITYRQEDMPFTSEGLVPDI---------------IINPHAIPSRMTIAHLIECQL 645 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 + +G F Sbjct: 646 SKVSS---------------------------------------LRGFEGDATPFTEVTV 666 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 + LL+ + G +Y+G TG + V +G Y +L H+VDDK+ Sbjct: 667 DSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKI 717 >UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L740_KORCO Length = 1121 Score = 320 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 165/881 (18%), Positives = 301/881 (34%), Gaps = 100/881 (11%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL--RGETA-----SFDIE 256 + I + A + I L +RL +GE F I Sbjct: 95 IELEIKVYAGGMELKTERVRIGHLPIMVKSKGCYLYGLDEKRLISKGEDPRDPGGYFIIN 154 Query: 257 ANGKVYVEKGRRITARHI------RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + +V V + + I V I + ++ + Y+ G + Sbjct: 155 GSERVLVMRDDIAPNKVIVEQTVAENKPYSHVAQIVSARAGLRTRLYLEYYM--RDGTIK 212 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + + + L G +R E + I + + A E +++ Sbjct: 213 ASTGALRGIPVAMLLKALGLERDEDIVDAISSVDDEIRSEFLYSLDDVQRRAEEEGAQII 272 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 E + RY A ++ N E I+ + +++ Sbjct: 273 TREEALDYIGRRLVQAVPRADRIRY---AKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIE 329 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER----LSLGDLDT 486 KL+ + GK E DD DH N+R+R G + + FR ++ R +KE+ LS G D Sbjct: 330 KLLKVVRGKLEPDDKDHFSNKRLRLSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYDL 389 Query: 487 LMPQDMINAKPISAAVKEFFGSS-------QLSQFMDQNNPLSEITHKRRISALGPGGLT 539 + + + + K ++ + + +SQ +++ N ++ + H RR+++ P GL Sbjct: 390 DIRRIIQSQKLVTQRIIRAVATGAWPGGDLGVSQNLERTNYIATLHHLRRVNSPLPAGL- 448 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 EVR H T GR+CP+ETPEG N+GL+ SL+++ +G P ++ Sbjct: 449 ---PLHEVRQTHGTSIGRLCPLETPEGTNVGLVRSLAIFCDV-TFGTDPEPIIELVLDWG 504 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 E G+ N L E+LV+ R +++ Sbjct: 505 AKPAKEAKPREVGSLTPVYVNGRLVAFTDKPEELVS------FLREKRAELNPE------ 552 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 + F+ + + + A+ R P + K + V Sbjct: 553 --------VNFIYNREEGAVFINADAGRMRRPLIPVSKLKEAMELLPKVDSGELSFTDLV 604 Query: 720 RGGVVQYVDAS------------RIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTC 764 + GVV+ +DA I K + P ++ ++ Sbjct: 605 KMGVVELLDADEEEYAVVAQSIEEITDKHTHFDFAPYAMFGVAASQIPYAEHNNIPRDII 664 Query: 765 INQMPCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRVAFMP 806 + M LGE + + D + T GQN+ VA +P Sbjct: 665 GSNMVRQGLGEYLANWRLRFDSRAFLMFYPQRPIVETRGAEITGYNYRPSGQNLVVALLP 724 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR-------DTKLGPEEITADIPNVGE 859 +GYN +D++++S+ + + + +R D P + E Sbjct: 725 MDGYNMDDALVMSKGAIDRGAARAVFFRTYETEARRHAIIEGDKFENPVALKKVSGKKEE 784 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 KL E GIV V GGD+L+GK +P +PE + + + + +D+S+ Sbjct: 785 QYYQKLGEDGIVDPETYVEGGDVLIGKTSPPR---FSPELTVGSG-YPQYTFERRDTSIS 840 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 + G V DV + T+ G EK R E + K + Q G+ R + Sbjct: 841 MRAWERGVVTDVLLATKTGGEKLVRVNVRETRPPELGDKFATRHGQKGVLGMIYRHEDMP 900 Query: 980 V--AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 G + LD + +G E ++ L ++ Sbjct: 901 FTAQGIIPDIVLDPHTIPSRMTIGQLYEIIAGKVGALEGRF 941 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 88/400 (22%), Positives = 139/400 (34%), Gaps = 83/400 (20%) Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE--KQNQLEQLAEQY 1018 + Q L + G V K L +G + + + ++ + Sbjct: 784 EQYYQKLGEDGIVDPETYVEGGDVLIGKTSPPRFSPELTVGSGYPQYTFERRDTSISMRA 843 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 E + L K G K+V+V + R + GDK A RHG KGV+ Sbjct: 844 WERGVVTDVLLATK-----------TGGEKLVRVNVRETRPPELGDKFATRHGQKGVLGM 892 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I EDMP+ G DIVL+P H + IG Sbjct: 893 IYRHEDMPFTAQGIIPDIVLDP---------------HTIPSRMTIGQLY---------- 927 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 E++ +G + F ++ E Sbjct: 928 -----------------------------EIIAGKVGALEGRFVDGTPFMSEPVEDLMEA 958 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L SG+ +YDGRTG + PV +G Y +L H+V DK+HAR+ G L+T+QP Sbjct: 959 LVKLGFEYSGEEIMYDGRTGRMIKAPVFIGISYYQRLKHMVRDKIHARARGQMQLLTRQP 1018 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--------------- 1303 + G+A+ GG R GEME L ++GAA +++ +SD Sbjct: 1019 VEGRARGGGLRLGEMEGEVLISHGAASVIRDRYIDQSDKTIIYVCKECGTIAFFNQKTNE 1078 Query: 1304 -MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + ++E+ S +++ L E Sbjct: 1079 FFCPRCQSSVEVKPLITSYASKLFIEELMSGHVDVRLSVE 1118 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 137/421 (32%), Gaps = 73/421 (17%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 K+ + L +Q++SF +F+E+ G++ + I+ N Sbjct: 3 SKRSEVDFYPIVKAYFRERNLADVQIESFNRFLER------GIQEVVDAFKEIE-LVENY 55 Query: 67 ELQYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 +L +G P D E ++R Y AP+ +++++ + Sbjct: 56 KLILSRVYVGRPEIDEYDGSSLPAMPNEIRLRNADYIAPIELEIKV--------YAGGME 107 Query: 117 IKEQEVYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRS 152 +K + V +G +P+M G F+ING+ERV+V + + Sbjct: 108 LKTERVRIGHLPIMVKSKGCYLYGLDEKRLISKGEDPRDPGGYFIINGSERVLVMRDDIA 167 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRG---SWLDFE-FDPKDNLFVRIDRRRKLPATI 208 P + + A+I+ R + L E + + R +P + Sbjct: 168 PNKVIVEQT--VAENKPYSHVAQIVSARAGLRTRLYLEYYMRDGTIKASTGALRGIPVAM 225 Query: 209 ILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 +L+AL E I+D + L + R E I + GR Sbjct: 226 LLKALGLERDEDIVDAISSVDDEIRSE--FLYSLDDVQRRAEEEGAQIITREEALDYIGR 283 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 R+ R I EY+ + + E + ++ LL Sbjct: 284 RLVQAVPRA------DRIRYAKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIEKLL----- 332 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 ++ D + ++ LR+ T + Y+++R + E S + Sbjct: 333 ----KVVRGKLEPDDKDHFSNKRLRLSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYD 388 Query: 388 L 388 L Sbjct: 389 L 389 >UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FY16_DUNSA Length = 924 Score = 319 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 141/406 (34%), Positives = 207/406 (50%), Gaps = 42/406 (10%) Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 + + + + +I L+ ++ ++ + + V + Sbjct: 516 SINDNKILSQQNKISSENLRSGTREGTKNFSLGQNNKIVLSGKFSGQSRVI--NFSNFSQ 573 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + + Q + KKL+ K K + ++ + +YL Sbjct: 574 LSSYTKKFRKNPRVLRTLQTLVDGQLKNLKIMKKLKNKAEKGGFVSTKSIKDIETIHIYL 633 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR+IQ GDKM+GRHGNKG++S+I P++DMP+ +GTP+D+VLNPLGVPSRMN+GQI E Sbjct: 634 AEKRKIQVGDKMSGRHGNKGIVSQILPMQDMPFLPDGTPIDMVLNPLGVPSRMNVGQIYE 693 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 LG+A K +G+ + G + + S + + Sbjct: 694 CLLGLAGKYLGEHYKISSFDE--------------IYGPEASRSFVFSKLYEARCKTGFK 739 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 L + G+IRLYDGRTG+ + +PVTVG YML+ Sbjct: 740 -------------------------WLFNPQYPGKIRLYDGRTGDCYHQPVTVGQSYMLR 774 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+VDDK+H RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLTVK Sbjct: 775 LVHMVDDKIHMRSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWALEGYGAAFTLLEMLTVK 834 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SDD+ GR ++ N++ G PE+F VL+ E+++L ++I L Sbjct: 835 SDDLTGRMTLWSNLILNKDL-TIGTPEAFKVLICELQALCLDIGLY 879 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 114/291 (39%), Gaps = 35/291 (12%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y L + RSNQ+TC+ P V G+ V+ GD L D ++ GEL+LGQN+ +A+MPW GY Sbjct: 95 YKLETFHRSNQDTCLTHKPAVFEGDWVQSGDFLTDCANSVGGELSLGQNIFIAYMPWEGY 154 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACV--SRDTKLGPEEITADIPNVGEAALSKLDES 868 NFED+IL+SER+V +D FT++HI+ +D E +T N + Sbjct: 155 NFEDAILISERLVSDDLFTSVHIERYEIENIQKDGISQQERLTNKEINEKMKSKE----- 209 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 K T E + K S + +S + + +S Sbjct: 210 -----------------KQTVARSAIRADENREYARKQNLKNSQTRQTSQKTKSNISQI- 251 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 ++ +I ++ ++ + I++ G +LV K Sbjct: 252 --------RTTRYEEITRDIPDVTPEEIC--HLDSFGIVKIGSIVEEGDILVGKITPINK 301 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 D P + L L + + + L + K+ K + + Sbjct: 302 KDFTPYQKLLYTILDKQIRPYRDSSLRAPKGIKAKVIDIKIFVKPGSVVRS 352 Score = 96.5 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 T+ + R T+ EEIT DIP+V + LD GIV IG+ V GDILVGK+T Sbjct: 240 TSQKTKSNISQIRTTR--YEEITRDIPDVTPEEICHLDSFGIVKIGSIVEEGDILVGKIT 297 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 P + TP +KLL I ++ +DSSLR P G+ VID+++F + G Sbjct: 298 PINKKDFTPYQKLLYTILDKQIRPYRDSSLRAPKGIKAKVIDIKIFVKPGSV----VRSP 353 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 K K D + LE R++A Sbjct: 354 FAYSSKFLKTDPPKRSSKLEKSKKVRVKARSEEKS 388 >UniRef50_A8P4S3 DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide, putative n=3 Tax=Fungi/Metazoa group RepID=A8P4S3_BRUMA Length = 1104 Score = 319 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 118/776 (15%), Positives = 247/776 (31%), Gaps = 94/776 (12%) Query: 203 KLPATI-----ILRALNYTTEQILDLF-FEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 K+P + +L+ +N + + ++ + I ++ L+ E+L Sbjct: 125 KMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKVVLIQEQLSKNRI----- 179 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 + + + + ++ K + + D + A E Sbjct: 180 ---MIGRNSKKELQCEILSSTQERKSKTYIASKKQRYYVRHNQLSDDVPIAIIFKAMGFE 236 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 D++ S G + E + AL I ++ + Sbjct: 237 SDHDIV---SAVGLEEKFVAAMAPS------IEECASHQIVTQEGALQYIASKVKIRKFG 287 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 + S + A+ + +G+ + + ++++L+ Sbjct: 288 PATSGTSTLPR--------EHEAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAE 339 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE----RLSLGDLDTLMPQDM 492 G E DD D GN+R+ G + F R +K L L Sbjct: 340 VGDTECDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNSLGKTLAAPLDIVKH 399 Query: 493 INAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEITHKRRISALGPGGLTRERAGFE--- 546 + I+ A+ + + +F M++ ++ IS L G +TR + FE Sbjct: 400 VRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSRLSYISVL--GMMTRINSTFEKTR 457 Query: 547 ----VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 R + P+ +G +CP +TPEG + GL+ +L++ + E P ++ ++ Sbjct: 458 KVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALLSHITT-DSDEKPVIRLLYNAGVED 516 Query: 603 I--HYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 + + SAI Y I N + + V + R G + F + S Sbjct: 517 VKSLHFSAIHNPAYHIVFLNGVIVGLTIDPQRIVSTIRAVRRHGLLNEFVSVSTNAAQRS 576 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV-- 714 + S G L + + + R + V G+ + V+ Sbjct: 577 V-YIASDGGRLCRPYIIVKNSIPQVTQEHIEELKKGYRIFEDFVDDGLIEYLDVNEMNDA 635 Query: 715 ---------------------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 T + G++ Y ++ + M G+ + Sbjct: 636 SIAVYENQIKPTTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM--GKQAMGTIGY 693 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 + R + + V P+ + + + +L GQN +A M ++GY+ E Sbjct: 694 NQQKRIDSLMYL----LVYPQRPLVKTKTI---EFCNFEKLPAGQNAIIAVMSYSGYDIE 746 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP---NVGEAALSK--LDES 868 D++++++ + + + +R + + LD+ Sbjct: 747 DALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGPTIEAATRKPIYKHQVLDQE 806 Query: 869 GIVYIGAEVTGGDILVGKVTP--KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 GIVY+GA + +++ K P E T I G + KD S+ N Sbjct: 807 GIVYVGACIRSKQVMINKHMPVVSMEAGATVSNNDGTNIGGSHEVEYKDVSVVYRN 862 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 103/267 (38%), Gaps = 64/267 (23%) Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMP+++ G D+++NP G ++ K+ Sbjct: 885 EDMPFNDLGMCPDMIMNPH----------------GYPSRMTVGKLM------------- 915 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 E++ + G F G + + E L Sbjct: 916 -------------------------ELLSGKNAVLSGKFHYGTAFGGDQVDIVCEELAAR 950 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 G+ L G TG+Q + G +Y KL H+V DKMHAR+ G +++T+QP G+ Sbjct: 951 GFNYLGKDMLTSGITGQQLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGR 1010 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK------MYKNIVDGN 1312 A+ GG R GEME L AYGA+ L E L V SD DV + + Sbjct: 1011 ARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEFKVDVCSQCGLIGYKSWCQMCRSSR 1070 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIEL 1339 +P + +L +E++S+ I ++ Sbjct: 1071 TMATIKIPYACKLLFQELQSMNIVPKI 1097 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 95/268 (35%), Gaps = 56/268 (20%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M E + I+ + P L V L+ + S+ F+ + ++ R+ I Sbjct: 2 MEKITGEVQTIKDKWTLVPAFLQVRGLVKQHIASYDYFVSTE------IKKILRANDKIT 55 Query: 61 -SYSGNSELQYVSYRLGEP-----------VFDVQECQIRGVTYSAPLRVKLRLVIYERE 108 + + L+Y+ +G P EC++R +TYSAP+ V + Sbjct: 56 SDANPSFYLKYLDIHVGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYT----- 110 Query: 109 APEGTVKDIKEQEVYMGEIPLMT------------------------DNGTFVINGTERV 144 + + + +G++P+M G F+I G+E+V Sbjct: 111 ---RGSQRVLRNGLIIGKMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKV 167 Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRK 203 ++ Q S K ++L + + + + K +VR ++ Sbjct: 168 VLIQEQLSKNRIMIGRNSKKELQCEILSSTQERKSK----TYIASKKQRYYVRHNQLSDD 223 Query: 204 LPATIILRALNY-TTEQILDLFFEKVIF 230 +P II +A+ + + I+ + F Sbjct: 224 VPIAIIFKAMGFESDHDIVSAVGLEEKF 251 >UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926601 Length = 1371 Score = 319 bits (816), Expect = 6e-85, Method: Composition-based stats. Identities = 97/430 (22%), Positives = 160/430 (37%), Gaps = 94/430 (21%) Query: 957 KKDLSEELQILEAGLFSRIRAVLVA--GGVEAEKLDKLPRDRWLELGLTDEEKQNQLE-- 1012 ++L +++ + + +L ++ E L + GL ++ + Sbjct: 992 WEELDRKVRETQPSSRESLWNMLEEQWNAIQPEILRSDEESSTFKSGLLGKDGLPPIGRF 1051 Query: 1013 -QLAEQYDELKHEFEKKLEAKRRK----------ITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 Q + Y H + + + K G D L V + L ++R Sbjct: 1052 MQHGDPYYSYYHIINGEYKTVKYKHMEPAYIDDIKILGSDKGDRELLKVSIKLRIQRNPI 1111 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK A RHG KG++S P E+MP+ E+G DI+ NP G PSRM IG ++E+ G +A Sbjct: 1112 IGDKFASRHGQKGILSVKWPAENMPFTESGMIPDIIFNPHGFPSRMTIGMMIESMAGKSA 1171 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G D + F E A Sbjct: 1172 ALHG-------------------------------ITHDSTPFIFSEKKPAAH------- 1193 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 + E+L G R+Y G G++ + + +G +Y +L H+V D Sbjct: 1194 ------------YMGEILVKAGYNYYGNERMYSGINGKEMDVDIFIGIVYYQRLRHMVAD 1241 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----D 1297 K RSTG +T QP+ G+ + GG RFGEME AL A+G+ + L + L SD Sbjct: 1242 KYQVRSTGPVDNLTHQPVQGRKRQGGIRFGEMERDALIAHGSGFLLHDRLFNCSDRCETH 1301 Query: 1298 VNGRTK-------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 V + + G+ + +P F L+ E+ + Sbjct: 1302 VCTKCGSIFTPIVRKPVTHHDSLIGFNDRKWFCRVCGHGDDIQKMLVPYVFKYLIAELTA 1361 Query: 1333 LGINIELEDE 1342 + I + L+ + Sbjct: 1362 MNIRLVLDVK 1371 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 81/625 (12%), Positives = 177/625 (28%), Gaps = 75/625 (12%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + + L + E + + + L ++ V Sbjct: 132 VPVMVKSKNCSLANLTPAQLIEKHEEAEEWGGYFIVNGIEKIL-------------RMLV 178 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 + R +R+ K L I + + KD +L + Sbjct: 179 MQRRNYPLAMVRKSWKSRGPLFTEFGVSI--RSIQKDQSGNINVLHYLTDGS-FTLSFIH 235 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLR--VDPTNDRLSALVEIYRMMRPGEPPTREAA 381 + Q L + YI + L + +V + R + ++ Sbjct: 236 QKEQFFVPLALILKALTANSDQYIYKQLLHGKEDDIFFKDVVVNMLRTLNDENLLSQNDV 295 Query: 382 ESLFENLF----FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 F + + + F +L + +I + +KL + N Sbjct: 296 LKYMGMRFRIKVNLPEWTSDEDIAKYMFQTCVLVH--LEKITDKFNLLIYMTQKLFALAN 353 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP 497 K + D+ N + G L ++E + Sbjct: 354 DKCAAESPDNPMNHEVLLGGHTYLLV----LKQMESF-----------------LATGNI 392 Query: 498 ISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGR 557 +S + ++ +S D+ N + ++H R + G E VR + P +G Sbjct: 393 LSKSGLGLMQATGMSVVADKLNFMRYLSHFR---CIHRGAFFTEMRTTTVRKLLPEAWGF 449 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA 617 +CP+ TP+G GL+N L+ + + + K+ + + +Y + Sbjct: 450 LCPVHTPDGAPCGLLNHLAAACKVENTKYPTSDLIKLLVKLGMQLCDMDLGLASDSYSVL 509 Query: 618 QANSNLDEEGHFVEDLVTCRSKGES----SLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 + + + V C+ ++ + + + S + F + Sbjct: 510 LDGCVVGRLRSHISEEV-CKKLRVFKALQKEMVPPTMEIIFIPRTKFASQYEGIFLFTDV 568 Query: 674 DDANRA----------LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 R +G+ Q + +D+ T + +++ + Sbjct: 569 ARMIRPVRNLLTNTVEYIGSFEQVYMDIAVYSDEIHAPTTTHMELN---DCAMLSELATL 625 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 Y D ++ + + +M G L RS+ Q P L + Sbjct: 626 TPYSDFNQSPRNMYQCQMGKQTMGTPCQALK--HRSDNKMYKIQTPQAPLVRNKTYSEYG 683 Query: 784 ADGPSTDLGELALGQNMRVAFMPWN 808 D LG N VA + + Sbjct: 684 VDN-------FPLGTNAVVAVISYT 701 Score = 83.7 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 51/340 (15%), Positives = 111/340 (32%), Gaps = 69/340 (20%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP--IQSYSGN-SELQYVSYRLGEP-- 78 + + ++SF +E GL A + + P + G +E+ + +G P Sbjct: 28 LQEFIQPHIESFNYILE------NGLNEAVKLIIPQEFELPDGRRAEISILDCSIGTPVV 81 Query: 79 ----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 EC+ R TY A L V L+ I T + ++P Sbjct: 82 DDNNFTSKTQRVYPAECRERHCTYKAKLTVTLQWKINGVLQGSVTKS--------IAQVP 133 Query: 129 LMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M + G F++NG E+++ + + + + K+ Sbjct: 134 VMVKSKNCSLANLTPAQLIEKHEEAEEWGGYFIVNGIEKILRMLVMQRRN-YPLAMVRKS 192 Query: 165 HSSGKVLYNARIIPYRG---------SWLDFEFDPKDNL-FVRIDRRRKLPATIILRALN 214 S L+ + R + L + D L F+ + +P +IL+AL Sbjct: 193 WKSRGPLFTEFGVSIRSIQKDQSGNINVLHYLTDGSFTLSFIHQKEQFFVPLALILKALT 252 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 ++Q +++++ D+ ++V LR + N + R ++ Sbjct: 253 ANSDQ---YIYKQLLHGKEDDIFFKDVVVNMLRTLNDENLLSQNDVLKYMGMRFRIKVNL 309 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + D+ + + + + D+ + Sbjct: 310 PEWTSDEDIAKYMFQTCVLVHL--EKITDKFNLLIYMTQK 347 >UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y3J9_CLAL4 Length = 1232 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 99/465 (21%), Positives = 154/465 (33%), Gaps = 113/465 (24%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ + +++ I + F + Sbjct: 821 MDDAMIINKSADERGFGYGTVYKVEKVDLSLSRRRGDPITQHFGFG-------SDEWPET 873 Query: 988 KLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 +KL D +G+ EE E L + + H E + + + DD Sbjct: 874 WKEKLDDDGLPLIGVKVEEGDPIVAYFDETLGKTKIKTYHSSEPAYIEEVKLL--ADDTG 931 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 + + + V R GDK + RHG KGV S+ P DMPY E+G D+++NP Sbjct: 932 DSECQQITIKYRVTRAPLIGDKFSSRHGQKGVCSRKWPTVDMPYSESGIQPDVIINPHAF 991 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG +E+ G A G ++ + E Sbjct: 992 PSRMTIGMFVESLAGKAGALHGIAQDSTPWKFSE-------------------------- 1025 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 D E LKL G +Y G TGE+ Sbjct: 1026 ------------------------DDTPADFFGEQLKLAGYNYHGNEPMYSGVTGEELRA 1061 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G Sbjct: 1062 DIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGT 1121 Query: 1284 AYTLQEMLTVKSDD----VNGRTKM------------------YKNI------------- 1308 AY LQ+ L SD + ++ Sbjct: 1122 AYLLQDRLLNSSDYAQTPICRSCGSLLNTQMSVPRIGSLASVKCRSCADKLETYIKKGEY 1181 Query: 1309 ---------------VDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 V G +P L E+ ++GI + Sbjct: 1182 VNEADIWEDGSGTKFVGGADTTTVAIPFVLKYLDSELTAMGIKMR 1226 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 136/925 (14%), Positives = 284/925 (30%), Gaps = 104/925 (11%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER---LRGETASFDIEANGK 260 +P + + +L +K + + + + L + + + Sbjct: 205 VPIMLKSNRCHLEKLSPDELVAQKEESDELGGYFIVNGIEKLVRMLIVQRRNHPMALIRP 264 Query: 261 VYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + +G T IR + D V G V + ++ + ++ Sbjct: 265 SFGNRGASYTKFGVQIRCVRPDQTSQTNVLHYLKDGNVTFRFSWRKNEYLVPVVMVLKAL 324 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 ++ + G +T + D + T + + + S L + R T Sbjct: 325 VETNDREIFDGIVAADTSNSFLTDRLELLLRTYKQYNLHSQKSTLAYLGDKFRVAFGATP 384 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 + ++ VGR R +L + + ++ ++KL + G Sbjct: 385 DVSD---------------IDVGREVLKRIVLVHLPDNA--DKFRLLLFSIRKLYTLVAG 427 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL----------GDLDTLM 488 D+ D ++ + G + + + + +K ++S D + Sbjct: 428 DCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKMQISSDIGRGVRVNFNDRKYMS 487 Query: 489 PQDMINAKPISAAVKEFFGSSQL-SQ-------------FMDQNNPLSEITHKRRISALG 534 M + I ++ F + L SQ ++ N I+H R + Sbjct: 488 RVFMRTNENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMV---H 544 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 G E VR + P +G +CP+ TP+G GL+N L+ Q + Sbjct: 545 RGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCQIATKASDVSAVPAA 604 Query: 595 TDGVVTDEIHYLSA------IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 + H +A + ++ + E+G V D + R L + Sbjct: 605 LARLGVSPAHTFAAGPGLCCVHLDGKIVGWTS---HEQGRIVAD--SLRLWKVQGLHNLP 659 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMER 706 + + L F H R + ++ + P + + T E Sbjct: 660 KDLEIGYVPPSSKGQYPGLYLFGGHSRMMRPAKYLPLDKEDILGPFEQVYMNIAVTPAEI 719 Query: 707 AVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 V + ++ + + D ++ + + +M G L RS+ Sbjct: 720 EENVHTHVEFAPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALV--HRSDN 777 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 Q P+ + + L D D G N VA + + GY+ +D++++++ Sbjct: 778 KLYRLQTGQ----TPIVKAN-LYDDYGMDN--FPNGMNAVVAVISYTGYDMDDAMIINKS 830 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEIT----ADIPNVGEAALSKLDESGIVYIGAEV 877 + + ++ + IT E KLD+ G+ IG +V Sbjct: 831 ADERGFGYGTVYKVEKVDLSLSRRRGDPITQHFGFGSDEWPETWKEKLDDDGLPLIGVKV 890 Query: 878 TGGDILVG-----------KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 GD +V K E E KLL G+ RV Sbjct: 891 EEGDPIVAYFDETLGKTKIKTYHSSEPAYIEEVKLLADDTGDSECQQITIKYRV---TRA 947 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR--IRAVLVAGGV 984 +I + F+ +K + + + + ++ + ++ I SR I + + Sbjct: 948 PLIGDK-FSSRHGQKGVCSRKWPTVDMPYSESGIQPDVIINPHAFPSRMTIGMFVESLAG 1006 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 +A L + +D D+ + + + H E G++L Sbjct: 1007 KAGALHGIAQDSTPWKFSEDDTPADFFGEQLKLAGYNYHGNEPMY-----SGVTGEELRA 1061 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGR 1069 + V Y ++ DK R Sbjct: 1062 DIYIGVVYYQRLRH--MVNDKFQVR 1084 Score = 59.9 bits (143), Expect = 8e-07, Method: Composition-based stats. Identities = 60/456 (13%), Positives = 129/456 (28%), Gaps = 75/456 (16%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIE-------QDPEGQYGLE 50 M + +R ++ P L ++ + SF E G + Sbjct: 66 MGAQFRTLEREKRFQNPPKDKSAYPLLADAVAPHVGSFNALTEGADGGLLNLAVKDIGTK 125 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLRV 98 F S + + +++ S +L P EC+ R TY L + Sbjct: 126 TIFDSNDETRLGNK-LKIRVDSVQLARPSVPPTDKLSVNRKTFPSECRERMSTYRGKLLM 184 Query: 99 KLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN------------------------G 134 K+ + + E G++P+M + G Sbjct: 185 KVVWSVNDGEEVSEVRDG--------GQVPIMLKSNRCHLEKLSPDELVAQKEESDELGG 236 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FE 187 F++NG E+++ + + + + + Y + R D Sbjct: 237 YFIVNGIEKLVRMLIVQRRNHPMALIR-PSFGNRGASYTKFGVQIRCVRPDQTSQTNVLH 295 Query: 188 FDPKDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + N+ R R+ +P ++L+AL T + F+ ++ N + + Sbjct: 296 YLKDGNVTFRFSWRKNEYLVPVVMVLKALVETND---REIFDGIVAADTSNSFLTDRLEL 352 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 LR + + A DV I+V E + V+ + Sbjct: 353 LLRTYKQYNLHSQKSTLAYLGDKFRVAFGATP----DVSDIDVGREVLKRIVLVHLPDNA 408 Query: 305 STGELICAANMELSLDLLAKL--SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 L+ + +L + + + + +G I E + N ++ Sbjct: 409 DKFRLLLFSIRKLYTLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKMQI 468 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 +I R +R + + + Sbjct: 469 SSDIGRGVRVNFNDRKYMSRVFMRTNENIGQKLQYF 504 >UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium RepID=Q5CPZ8_CRYPV Length = 1287 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 155/1103 (14%), Positives = 337/1103 (30%), Gaps = 206/1103 (18%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLE--AAFRSVFPIQSYSGNSELQYVSYRL 75 P L L+ +DS+ F+ + + RS + ++++ R+ Sbjct: 114 LPYFLKTEGLVKHHIDSYNYFVTTEIQSIVRANANRMIRS-----DVDPSFFIEFLDARV 168 Query: 76 GEPVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 G P C++R +TY+AP+ V + V ++++ V +G Sbjct: 169 GMPKLEENMITVDLTPMMCRMRDITYAAPIFVDVDYV--------RGNTVVRKKNVEIGR 220 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLYNARII----- 177 IP+M + +++G + +L+ P G F K + L RII Sbjct: 221 IPVMLRSKVCILHGKTAAEMVKLNECPHDPGGYFVVKGTEKAILMQEQLSKNRIIVELDN 280 Query: 178 ------------PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLF 224 S F ++P I+L+A+ T ++I + Sbjct: 281 KHNYCATVTSTTAESKSRTLVVFKNGKLYLRHNSFSDEIPLCIVLKAMGIETEQEIFFMI 340 Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + + E+ E + + + + K ++R + ++ Sbjct: 341 GNEPHHQEGIINSLQEVHQEGIFTQRQALLFMSKKAKSKFKSTFGSSRGFDKSNAEESAE 400 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 E+ K + D+L L++ I T++T+ Sbjct: 401 NSGFTEFGGSK---------------SSLCGTSIDDVLETLNRVLLSHIGTIYTDLHPKA 445 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG-RM 403 ++ + ++L++ +D Y + Sbjct: 446 LFLCLMAKRVLDASEDNSLLD-------------------------DKDYYGNKRIELAG 480 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 + L + + +L+K I + + R+ D Sbjct: 481 QLISILFEDLFKRFSVLTKKQIDQTLIRYFQTRDASKAGTGRDD---------------- 524 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLS 522 + D +P D+I +A G+ + +F M+++ Sbjct: 525 -------------SNSTYPDCFRNLPTDIITRGMQTALST---GNWSIKRFRMERSGMTQ 568 Query: 523 EITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 +T I++LG + R R + P+ +G +CP +TPEG + GL+ +L++ Sbjct: 569 VLTRFSYIASLGIMTRVDSQFEKARKVSGPRALQPSQWGILCPCDTPEGESCGLVKNLAL 628 Query: 578 YAQTNEY------------------------GFLETPYRKVTDGVVTDEIHYLSAIEEGN 613 F K+++ + +E + +++ Sbjct: 629 TTHITTDHCPQYLTSLLFTLGVQDISSCSYLDFNTKQSEKLSNEDLKNESSGKNNVKKHY 688 Query: 614 YVIAQAN--SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 YV + + L R KG F +++ S+ Q+ + G L L Sbjct: 689 YVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVSIFCNHIH-SSVQIATDGGRLCRPL 747 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS------------------- 712 D + Q + G+ + V+ Sbjct: 748 IIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDVNEENNLLIALRDENLTNETTH 807 Query: 713 ----GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 ++ + G++ Y + ++ + M G ++ R + + Sbjct: 808 LEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGS--VGFNQFLRCDSVLYL--- 862 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 V +P+ + + + +L GQN VA M + GY+ ED+I++++ V Sbjct: 863 -LVYPQKPLCKTRTI---EMINFEQLPAGQNSSVAVMSFAGYDIEDAIVMNKASVDRGFA 918 Query: 829 TTIHIQELACVSRDTKLGPEE-----ITADIPNVGEAALSK-----LDESGIVYIGAEVT 878 ++ + G E I+ N G S LD G+ +G +V+ Sbjct: 919 RCFVMKRQTIELQKLPNGLSERVVRPISVGSGNTGNRRFSFKNDSILDNDGVCNVGVQVS 978 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 DI+V K++P + + S+ K S ++ S + V + Sbjct: 979 EDDIIVNKMSPINTREYVGDPS------QFDLSEYKPSPVKYKGPTSSYIDRVILTENAD 1032 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 +I ++ +Q ++ + G + ++ + + P Sbjct: 1033 G------NQIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSETGWCPDLIMN 1086 Query: 999 ELGLTDEEKQNQLEQLAEQYDEL 1021 G +L +L + Sbjct: 1087 PHGFPSRMTVGKLLELISSKASV 1109 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 82/386 (21%), Positives = 134/386 (34%), Gaps = 75/386 (19%) Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 IL+ + + + K+ + ++ + + Sbjct: 964 ILDNDGVCNVGVQVSEDDIIVNKMSPINTREYVG------DPSQFDLSEYKPSPVKYKGP 1017 Query: 1026 EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 + D +I KV RR + GDK + RHG KGV+ I ED+ Sbjct: 1018 TSSYIDRVILTENAD-----GNQIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDL 1072 Query: 1086 PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFI 1145 P+ E G D+++NP G ++ K+ Sbjct: 1073 PFSETGWCPDLIMNPH----------------GFPSRMTVGKL----------------- 1099 Query: 1146 QRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP 1205 E++ ++ G F G E + L Sbjct: 1100 ---------------------LELISSKASVLDGNYRYGTAFGGTPLEESAKCLVEHGFH 1138 Query: 1206 TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 SG+ L G TGE E + VG +Y KL H+V DKMHAR G ++T+QP G+++ Sbjct: 1139 YSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARGRGPRQILTRQPTEGRSKD 1198 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK------MYKNIVDGNHQM 1315 GG R GEME L AYGA+ L E L + SD +V + Sbjct: 1199 GGLRLGEMERDCLVAYGASNLLIERLMLNSDVFETNVCNQCGLFGYNNYCHYCKSSQDVS 1258 Query: 1316 EPGMPESFNVLLKEIRSLGINIELED 1341 +P + +L +E++++ + + Sbjct: 1259 IIRLPYACKLLFQELQAMNVCPRIRT 1284 >UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 99B1 RepID=D2TET4_9VIRU Length = 1507 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 160/1030 (15%), Positives = 327/1030 (31%), Gaps = 191/1030 (18%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQYVSYRLGEPVF------ 80 ++ Q++S+ FIE + + + + S + + + + + P Sbjct: 23 VAHQIESYDHFIENQLPY---IISEGSDISYMHSSGKVSHHVHFTNPSVNRPAIQESDGF 79 Query: 81 ----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY----MGEIPLMTD 132 ++RG+TYS+ + V + I++R + + ++V+ + +IP+M Sbjct: 80 YKPITPHIARLRGLTYSSTVVVDV---IHDRINHTVSPPTLINRKVFRNVIIAQIPVM-- 134 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 RS + S+ + ++ DP Sbjct: 135 -----------------VRSKLCYLADVSENDLSADAKKHECKV------------DPGG 165 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 + + + +P T + V + + + E Sbjct: 166 YFIISGNEKTLIPQT--------------KIRTNHVFIFPSKHGEKHKYTAEV------- 204 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + E R T+ + + V + Sbjct: 205 -------RSCHEAKLRSTSTIYMNINDISNGEVPVITCKLPFLKSNLSV----------- 246 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV--DPTNDRLSALVEIYRMM 370 L L I N I + N A+++ Sbjct: 247 ------FILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQNYSRDAIMDWVGRN 300 Query: 371 RPGEPP--TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 + T+E+ E +++ SE + + I + Sbjct: 301 VTSDTTRATKESREKYIDHIITSE------------LAPHMGLVNNPETNKKKMIFIGHM 348 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR-----VGLVRVERAVKERLSLGD 483 +++L+ + G+ VDD D N+RI S G + R + + +++++ Sbjct: 349 IQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQLRKQVESPR 408 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSS----------------QLSQFMDQNNPLSEITHK 527 T ++++ K I++ +K F + + Q + + ++ + Sbjct: 409 EATFNVGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQILPRLTTMATLGAS 468 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN----- 582 R+I+ + RE R +HP+ +G VC +TPEG GL+++L++ + Sbjct: 469 RKINT----PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRIRIGAPM 524 Query: 583 --EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 L T + T Y+ N I +D+ + + R G Sbjct: 525 QPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIKEIATQMRSLRRHG 584 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + ++ V S +L+ L D + MQ AV ++ Sbjct: 585 NLPFDCS--ISISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQNPAV-VPNKYTRML 641 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV-IKVNEDEMYPG---EAGIDIYNLTKY 756 G+ + A++ + + + I + E++P + + Sbjct: 642 REGIIEYID-------SAEQTNMRVAIHHTDIEQDEYTHIEIHPALLTGICVSQIPFCDH 694 Query: 757 TRSNQNTCINQMPCVSLGEPVER--------GDVLADGP----STDLGEL------ALGQ 798 +S + ++G G VLA +T L EL G Sbjct: 695 NQSPRIAYQAAQCKQAIGLYTTNFAERLDTVGHVLATPQKPLVTTRLEELLGTSVVRSGA 754 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE--EITADIP- 855 VA M ++G+N +DS+L+++ + FT+ + + T E E +IP Sbjct: 755 VPIVAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEEKGTGADIERFENPKNIPG 814 Query: 856 --NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 + EA SK+D+ G+ IG GD+L+GKV Q P+E +R Sbjct: 815 CSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQADPKEGEVR------RDTK 868 Query: 914 KDSSLRVPNGVSGTVIDVQVFT--RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGL 971 +D S V V+D F+ +G K + + K L+ + ++L Sbjct: 869 RDRS-HVLRTDEPVVVDAVFFSKTPEGHGYVKVRTRAIRIPMVGDKFCLTADHEVLTKDG 927 Query: 972 FSRIRAVLVA 981 + I V Sbjct: 928 WKYINNVTPD 937 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 107/295 (36%), Gaps = 75/295 (25%) Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 + RHG KGV P D P +G DI++NP H + IG Sbjct: 1266 SSRHGQKGVCGVTMPAADFPCTADGVAPDIIINP---------------HAIPSRMTIGM 1310 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + +L + +G Sbjct: 1311 LMEMVLSKVA---------------------------------------CYEGETQDGTP 1331 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F G I + L+ + G LY+G +GE E + + Y +L H+V DK HAR Sbjct: 1332 FTGNNIELIADRLETHGMQRYGNEMLYNGMSGEILESMIFIAPCYYQRLKHMVVDKSHAR 1391 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV----NGRT 1302 + G+ L+T+ P G+++ GG R GEME ++ ++GA ++ L +SD + Sbjct: 1392 NRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKC 1451 Query: 1303 K-----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ G H +P S +L++E+ + I+ LE Sbjct: 1452 GHFAREGTDDTSVKNSGMWCEHCKTGEHCTHTQLPYSMKLLIQELAAAHISATLE 1506 >UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVD4_PHATR Length = 1211 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 134/849 (15%), Positives = 273/849 (32%), Gaps = 118/849 (13%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I+ KV + + + R + ++D K I + + +K YI G + Sbjct: 210 GYFVIKGVEKVILIQEQLSKNRV---ILEEDNKGIMASITSSTHERKSKAYILIKNGRVY 266 Query: 311 CAANMELS-LDLLAKLSQSGHKRIETLFTNDLDHGPYIS------ETLRVDPTNDRLSAL 363 N + + L G + L P I+ E + + AL Sbjct: 267 LKNNTLGDDIPVAVVLKAMGIESDLELVQLVGSESPIINALALSLEEPSRLGIHTQAQAL 326 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 I +R P+ ++ E R L+ V Sbjct: 327 RFIGAKIRGRSGPSGPSSSYRKNVSPEDEAREVLANVVLSH------VPVTHFDFREKAL 380 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER----L 479 I ++++++ + GK +DD D+ GN+R+ G + F + +K + L Sbjct: 381 YIGHIVRRVLLVHLGKMPLDDKDYYGNKRLELAGNLLSLLFEDLFKIFNKDLKRQADLVL 440 Query: 480 SLGDL-DTLMPQDMINAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEITHKRRISALGP 535 S + I I+ + + +F MD+ ++ +SAL Sbjct: 441 SKPNRTQAFDVVKTIRPDTITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSAL-- 498 Query: 536 GGLTRERAGFE-------VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 G +TR + FE R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 499 GMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITTDEADT 558 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 P ++ + +++ ++ E ++ + N + +LV K Sbjct: 559 RPIERICRDLGVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPRELVRNLRKMRRR--- 615 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK----PLVGT 702 + + HD+ + + R P L D+ P + Sbjct: 616 ---------------GLAGEFVSVYLHDEQCAVHIATDGGRVCRPLLIVDEETGLPKLQQ 660 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRI-----------------------VIKVNED 739 ++A+ + R G+V+YVD + ++ Sbjct: 661 IHMESLALGTMDITDLMRQGIVEYVDCNEENNTLIAVTERDLEVAILHGLETRKMRYTHL 720 Query: 740 EMYPGEAG---IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS-------- 788 E+ P I + +S +NT M ++G DG Sbjct: 721 EVDPFTILGVVGGIIPFPHHNQSPRNTYTVAMAKQAMGSVSMNQYERMDGLIYTLIYPQK 780 Query: 789 ----------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 + + G N +A M ++GY+ ED+I++++ V + +++ Sbjct: 781 PMVKSRTLDLVNFDNIPGGHNACIAVMSYSGYDIEDAIILNKAAVDRGFGRCMVLRKHQT 840 Query: 839 VSRDTKLGPEEITADIPNVGE----------AALSKLDESGIVYIGAEVTGGDILVGKVT 888 R G + T P+ G A +D+ GI +G ++ G ++V K + Sbjct: 841 SVRRYANGTMDRTCAPPDPGSFPDGEDDKRFARYMAIDKDGICRVGEKIENGSVMVNKES 900 Query: 889 PKGETQLTPE-EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 P T + + + K S + S V V + + + + Sbjct: 901 PADTTSNMAGVDFGFNSGMSMAHLNYKPSGVSYRGSASTYVDKVLITSNENEQF------ 954 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + ++ L+Q ++ + G ++ + + +P G Sbjct: 955 LIKVMLRQVRRPEIGDKFASRHGQKGVCGLIVPEEDLPFNEFGHVPDLIMNPHGFPSRMT 1014 Query: 1008 QNQLEQLAE 1016 +L +L Sbjct: 1015 VGKLLELLV 1023 Score = 305 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 86/401 (21%), Positives = 143/401 (35%), Gaps = 63/401 (15%) Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 ++ R+ + G V K + P D + D Sbjct: 859 PGSFPDGEDDKRFARYMAIDKDGICRVGEKIENGSVMVNK--ESPADTTSNMAGVDFGFN 916 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + + Y + K+ + ++KV L RR + GDK A Sbjct: 917 SGMSMAHLNYKPSGVSYRGSASTYVDKVLITSNENEQF--LIKVMLRQVRRPEIGDKFAS 974 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KGV I P ED+P++E G D+++NP G P + +G + Sbjct: 975 RHGQKGVCGLIVPEEDLPFNEFGHVPDLIMNPHGFP---------------SRMTVGKLL 1019 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 ++ + G ++ S F +E Sbjct: 1020 ELLVGKA----------------GLYEGRQGYSSAFGEE------------------FGS 1045 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 E L L +G+ LY G GE + + G ++ KL H+V DK HAR+ Sbjct: 1046 ADTAQSASEALLRNGLNYTGKDILYSGTNGEPLDAYIFSGPVFYQKLKHMVLDKAHARAR 1105 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----- 1303 G +++T+QP G+++ GG R GEME L AYG + + E L SD + Sbjct: 1106 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGVSNLIMERLMHSSDAFSANVCLTCGL 1165 Query: 1304 -----MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + G + +P + +L +E++S+ + L Sbjct: 1166 LQYEGWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRL 1206 >UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota RepID=C8VU19_EMENI Length = 1225 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 111/821 (13%), Positives = 263/821 (32%), Gaps = 92/821 (11%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F + KV + + + R I + + + + I + + Sbjct: 250 GYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIILKKDRLYV 309 Query: 311 CAANMELSLDLLAKLSQSGHKRIETL-------FTNDLDHGPYISETLRVDPTNDRLSAL 363 + + ++ L G + + + E + AL Sbjct: 310 KHNVLSEDIPIVILLKAMGIHTDKEMMLLVAGVDKVYQEDFAINFEEAIKVGVFTQQQAL 369 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL-SK 422 I ++ S R + + + E++ Sbjct: 370 DWIGSRIK-------------INRKQMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKA 416 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--- 479 + ++ ++++ +N VDD D+LGN+R+ G++ F + +K + Sbjct: 417 IYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKV 476 Query: 480 --SLGDLDTLMPQDMI--NAKPISAAVKEFFGSSQLS--QF-MDQNNPLSEITHKRRISA 532 ++ +I ++ I+ + + S +F M++ ++ I+A Sbjct: 477 LNKRNRVEAFDAWSVIGMHSNHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAA 536 Query: 533 LG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 LG + R R + P+ +G +C +TPEG GL+ +L++ Sbjct: 537 LGMMTRISSQFEKTRKVSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDE- 595 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEE---GNYVIAQANSN---LDEEGHFVEDLVTCRSKGE 641 E P + + + ++I + E G+Y I+ + +F+ R G Sbjct: 596 EGPIKNLIFMLGAEDIQTVGGKEIYAPGSYTISINGTPMALTRRPKYFLNAFRRLRRMGR 655 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 S F +++ + V + + L + ++ + + R+ + Sbjct: 656 ISEFVSIYINHHQRAV-HVATDDGRICRPLIIVEDGKSRVKKHHLRKLRDGTMQFDDFLA 714 Query: 702 TGMERAVAVDS-----------------------GVTAVAKRGGVVQYVDASRIVIKVNE 738 G+ V V+ T + G++ Y ++ + Sbjct: 715 QGLVEYVDVNEENDSLIAIYEKDITDTTTHMEIEPFTILGAVAGLIPYPHHNQSPRNTYQ 774 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 M G+ I ++ R + + V +P+ + + T +L GQ Sbjct: 775 CAM--GKQAIGAIASNQFLRIDSILYL----MVYPQKPMVKSRTI---ELTKYDQLPAGQ 825 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG 858 N VA M ++GY+ ED++++++ V ++ + G ++I + Sbjct: 826 NATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNMKSYSNGTKDILSPPTYEN 885 Query: 859 EAALSK---LDESGIVYIGAEVTGGDILVGKVTP-KGETQLTPEEKLLRAIFGEKASDVK 914 +A + K L+ G+ +G +V G++ + K TP + + P R I Sbjct: 886 DAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGMPGSDAGRPISYNPTP--- 942 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 + ++P D + + + +I ++ +Q ++ + G Sbjct: 943 -MTYKLP--------DPAYIDKVMISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGV 993 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 ++ + P G ++ +L Sbjct: 994 TGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELV 1034 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 94/427 (22%), Positives = 155/427 (36%), Gaps = 75/427 (17%) Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 G + + + +I + + + +LE+ + + + AG V Sbjct: 855 GRCQVFRKYVTNMKSYSNGTKDILSPPTYENDAPIRKH-ALLESDGLAAVGEQVNAGEVY 913 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 K D+ + G+ + + + K ++ Sbjct: 914 INKSTP---DQSMSSGMPGSDAGRPIS--YNPTPMTYKLPDPAYIDKVMISATENE---- 964 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 +I+KV RR + GDK + RHG KGV I DMP+ + G DI++NP G PS Sbjct: 965 -NQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPS 1023 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM +G++LE G A G Sbjct: 1024 RMTVGKMLELVAGKAGVLSGQ--------------------------------------- 1044 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 G + ++ + L G+ L G TGE V Sbjct: 1045 ----------HGYGTCFSGTP-----VEQMTQTLIDKGFSYGGKDYLTSGITGEALPFYV 1089 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G +Y KL H+V DKMH+R+ G + +T+QP G+++ GG R GEME L AYG + Sbjct: 1090 FTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQ 1149 Query: 1286 TLQEMLTVKSD----DVNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 L E L + SD DV + + ++ +P + +L++E+ S+ + Sbjct: 1150 LLLERLMISSDRHEVDVCEQCGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQELMSMNV 1209 Query: 1336 NIELEDE 1342 L+ E Sbjct: 1210 TARLKLE 1216 >UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyceta RepID=B9WJL4_CANDC Length = 1166 Score = 316 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 97/466 (20%), Positives = 156/466 (33%), Gaps = 110/466 (23%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ + + + + I + F Sbjct: 758 MDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFG-------TDEWPEA 810 Query: 988 KLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 +KL D +G+ EE + L + + H E + + + GDD Sbjct: 811 WKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPGYIEEVKLL--GDDSN 868 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 + + + + R+ GDK + RHG KGV S+ P DMP+ E+G D+++NP Sbjct: 869 EQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAF 928 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG +E+ G A G ++ + E Sbjct: 929 PSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQ------------------------- 963 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 TP E L G +Y G TGE+ Sbjct: 964 -------------------DTPA------DYFGEQLLKAGYNYHGNEPMYSGATGEELRC 998 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G Sbjct: 999 DIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGT 1058 Query: 1284 AYTLQEMLTVKSDDVNG-------------------------RTKMY------------- 1305 ++ LQ+ L SD R + Sbjct: 1059 SFLLQDRLLNCSDYTQTPVCRSCGSILTTQTSVPRIGSMASIRCRRCAVSLDKYEGYAAD 1118 Query: 1306 ---------KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K V G+ +P L E+ ++GI + E Sbjct: 1119 SDIWEDGHGKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKMRYNVE 1164 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 127/958 (13%), Positives = 264/958 (27%), Gaps = 201/958 (20%) Query: 24 VPYLLSIQLDSFQKFIE-------QDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLG 76 + ++ + SF ++ G + F + +++ S +L Sbjct: 28 LKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGTKTIFDTPETSGRLGNKLKIRVDSVQLA 87 Query: 77 EP------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 +P EC+ R VTY + L + + + + E + Sbjct: 88 KPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDGEEVSEVREA-------- 139 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G+IP+M + + SP ++ + G Sbjct: 140 GQIPIMLKSNRCHL----------EKLSPNQLVEAKEESDELGG---------------- 173 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + ++ KL +I++ N+ I F + + + P+ Sbjct: 174 ----------YFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPD 223 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 + + +G V R + Sbjct: 224 QTSQTNVLHYLN-DGNVTFRFSWRKNEFLV------------------------------ 252 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 ++ A ++ + + + D + T + + L Sbjct: 253 PVVMILKALIETNDREIFDGIVGNDTENSFL-----TDRLELLLRTYKTYNLYSQQETLA 307 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 + R D+S + K + + Sbjct: 308 YLGDKFR-----------------VVFGASPDMSDIEVGKEVLKRIVLVHLPNNTDKFRM 350 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL----- 479 ++ +++KL + G D+ D ++ + G + + + + +K ++ Sbjct: 351 LLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDIN 410 Query: 480 -----SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL-SQ-------------FMDQNNP 520 + D + + I ++ F + L SQ ++ N Sbjct: 411 RGVGINFDDRKYMTRVFSRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINF 470 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 I+H R + G E VR + P +G +CP+ TP+G GL+N LS + Sbjct: 471 YRFISHFRMV---HRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCK 527 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 + K + +A + +G V Sbjct: 528 IATEASDVSQVPKALTQLGVLPADSFAA--------GPNLCCVQLDGRIVGWT-----TH 574 Query: 641 ESSLFSRDQVDYMDVSTQQ--VVSVGASLIPFLEHDDANRALM---GANMQRQAVPTLRA 695 E D + Y V+ + + +P + + M R Sbjct: 575 EQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFGGRSRMMRPVRYLPLD 634 Query: 696 DKPLVG-----------TGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNED 739 + +VG T E + S ++ + + D ++ + + Sbjct: 635 KEDIVGPFEQVYMNVAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQC 694 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 +M G L RS+ Q P+ + + L D D G N Sbjct: 695 QMGKQTMGTPGTALV--HRSDNKLYRLQTGQ----TPIVKAN-LYDDYGMDN--FPNGMN 745 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT----ADIP 855 VA + + GY+ +D++++++ + + ++ + IT Sbjct: 746 AIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFGTD 805 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVG-----------KVTPKGETQLTPEEKLL 902 EA KLD G+ IG +V GD +V K E E KLL Sbjct: 806 EWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPGYIEEVKLL 863 >UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bilateria RepID=Q7Q416_ANOGA Length = 1089 Score = 316 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 121/806 (15%), Positives = 251/806 (31%), Gaps = 80/806 (9%) Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPAT 207 Q S F + D K + + + + + +L+ D + + P Sbjct: 36 QHIDSFNYFINVDIKKIVQANQEVKSDADPCFYLKYLNVHVGKPDVEEGFNNTKSTTPHE 95 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET----------------- 250 LR + Y+ +D+ + + + N L + +P LR Sbjct: 96 CRLRDMTYSAPITVDIEYTRGTQRVVRNGLLIGRMPIMLRSSNCVLTGKSDYQLSKVNEC 155 Query: 251 -----ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 F I KV + + + + I +D +I+ V + ++ + Sbjct: 156 PMDPGGYFIIRGTEKVILIQEQLSWNKMIT---EDYNGVIQCQVTSSTHEKKSRTILLTK 212 Query: 306 TGELICAAN----MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV---DPTND 358 G N +L + + + I L D + + +L Sbjct: 213 HGRYYLKHNSMTEEIPVAIILKAMGIASDQEIMQLVGIDPETQKRFAPSLLEAANHKVFT 272 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + AL + + R + E R L+ + Sbjct: 273 QQRALEYMGSKL----IAKRFTTAATKYKTTADEARDLLATTILAH------VPVPSFNF 322 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK-- 476 + + ++++++ + VDD D+ GN+R+ G + F R +K Sbjct: 323 QVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKMI 382 Query: 477 --ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEITHKRRIS 531 + + + I+A ++ + +F M++ ++ IS Sbjct: 383 ADKNIPKIKAAQFDVGKHMREALITAGLETAISTGNWTIKRFKMERAGVTQVLSRLSYIS 442 Query: 532 ALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 ALG + R R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 443 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTE-V 501 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 E P ++ ++I L N + + G+ + + R E Sbjct: 502 DEEPVIRLAYNAGVEDIRLLGGETINNPKV----FMVFINGNILGVTIAYRRLVEVFRMM 557 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 R + + + + R + R + + ER Sbjct: 558 RRRGLIGAFVSIHTSFTQRCVYIHTDGGRLCRPYIIVQAGRPLYLDVNEENDSFIAYQER 617 Query: 707 AVAVDSGV-------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + + T + G+V Y ++ + M G+ + I + R Sbjct: 618 DIDPEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAM--GKQAMGIIGYNQKNRI 675 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 + V P+ R + T+ +L GQN VA M ++GY+ ED+++++ Sbjct: 676 DTLMYN----IVYPQSPMVRSRTI---ELTNFDKLPAGQNATVAVMSYSGYDIEDALILN 728 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLG-----PEEITADIPNVGEAALSKLDESGIVYIG 874 + + + + C + + + A LD GIV G Sbjct: 729 KASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKDGVTGKIIAKHECLDTDGIVSPG 788 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEK 900 +T +V K P ++ E+K Sbjct: 789 ERLTCKQTMVNKEMPAVKSNNPIEQK 814 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 86/444 (19%), Positives = 157/444 (35%), Gaps = 77/444 (17%) Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE--KDKRALEIEEMQLKQAKKDLSEELQI 966 + + V S + +++ R K + + Q + ++ Sbjct: 707 QNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKD 766 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE 1026 G L G+ + + + + + ++ + + Sbjct: 767 GVTGKIIAKHECLDTDGIVSPGERLTCKQTMVNKEMP-------AVKSNNPIEQKESGQQ 819 Query: 1027 KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 + R ++ ++ +VK+ L RR + GDK + RHG KGV I ED+P Sbjct: 820 PIAYSARVLVSTNNEEEF----LVKILLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDLP 875 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 +++ G D ++ H + +G + Sbjct: 876 FNDYGMSPD---------------MVMNPHGFPSRMTVGKTL------------------ 902 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 E++ + +G F G+K +++++ L Sbjct: 903 ---------------------ELLGSKAGVLEGKFHYGTAFGGSKCSDLQDELFNHGFNY 941 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 G+ Y G TGE E + G +Y KL H+V DKMHAR+ G +++T+QP G+++ G Sbjct: 942 LGKDVFYSGITGEPLEVYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTQGRSREG 1001 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK------MYKNIVDGNHQME 1316 G R GEME L +YGA+ + E L + SD DV N Sbjct: 1002 GLRLGEMERDCLISYGASMLIMERLMISSDAFDVDVCNVCGRLAYSSWCHNCRSSASVST 1061 Query: 1317 PGMPESFNVLLKEIRSLGINIELE 1340 MP + +L +E+ S+ I L+ Sbjct: 1062 ISMPYACKLLFQELTSMNIVPRLK 1085 >UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular organisms RepID=Q67ZK6_ARATH Length = 639 Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 91/436 (20%), Positives = 164/436 (37%), Gaps = 74/436 (16%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV--EAEKLDK 991 + ++ +A M + + E+ ++ ++ ++ G + K+D Sbjct: 249 YNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDS 308 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 L D + +G + + E +K + ++ ++ ++ D+ Sbjct: 309 LEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDE----GKNF 364 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V L R GDK + HG KGV+ + ++ P+ G DIV+NP PSR Sbjct: 365 AAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTP 424 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+LE L I ++++ A + + A Sbjct: 425 GQLLEAALSKG-------IACPIQKEGSSAAYTKLTRHA--------------------- 456 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 F EI E L G R+Y+GR+GE + +G Sbjct: 457 ---------------TPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGP 501 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E Sbjct: 502 TFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHE 561 Query: 1290 MLTVKSD----DVNGRTK-------------------MYKNIVDGNHQMEPGMPESFNVL 1326 L SD + + K + V +H + +P +L Sbjct: 562 RLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLL 621 Query: 1327 LKEIRSLGINIELEDE 1342 +E+ S+GI + + E Sbjct: 622 CQELFSMGITLNFDTE 637 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 58/343 (16%), Positives = 110/343 (32%), Gaps = 66/343 (19%) Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 FV +L + R + E + D D + ++ + L+ L + + L + Sbjct: 56 SFVAELKSRRRQSELPREMEIKRD-KDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQ 114 Query: 688 QAVPTLRAD-------------------------KPLVGTGMERAVAVDSGVTAVAKRGG 722 L +P + T E ++ GV+ Sbjct: 115 YPFDHLLDHGILELIGIEEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSCA----- 169 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 VV + + + + + + I + R + + P L Sbjct: 170 VVPFANHDHGRRVLYQSQKHCQ-QAIGFSSTNPNIRCDTLSQQLFYPQKPL------FKT 222 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR- 841 LA L GQN VA GYN EDSI++++ ++ F + I+ Sbjct: 223 LA-SECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDA 281 Query: 842 ----DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 K E + + + L++ G +IGA ++ GDI++G+ T G Sbjct: 282 KDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESG------ 335 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 D S+++ + G V V + + D + Sbjct: 336 ----------------ADHSIKLKHTERGIVQKVVLSSNDEGK 362 >UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Tax=Sarcocystidae RepID=RPOB_TOXGO Length = 1051 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 163/780 (20%), Positives = 307/780 (39%), Gaps = 42/780 (5%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD--IEANGK 260 K+ L + Y I K + L+ L + + K Sbjct: 62 KVNNINFLDNVQYINSLIKIFLPLKFQNLKTNKVFFKNLLIFELPKYNSYNYCYLNGLKK 121 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 +++ K + K I + +D ++ + L + Sbjct: 122 IFISKYFTSNGIFFNKYLKRKYN-IYYAKLLLTNSNFFNIILDLKLKQIYLSIKN-LKFN 179 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 + L G K + L + + + + D ++ I + + Sbjct: 180 FILFLYYLGIKNTDILKYSRYKNSKILKLLIFSALQTDLVNNKKIILKNL---------N 230 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 L Y + + K N + L D I ++ L+D+++ K Sbjct: 231 YLKSIFKLTILNKNYKNFIISKDKLNYNYG---DFSKNNLLIIDFIFILDLLLDLQSKKL 287 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA 500 IDHL N+ I ++G ++ F+ L + + + L L + Sbjct: 288 CFKTIDHLDNKHINTIGNYFQHNFKFYLKKFISIIPNLIKLQKFSLLKVYN--------- 338 Query: 501 AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 KE + L Q+++Q N SE+ HK +++ + + +R++ G++C Sbjct: 339 -FKELLILNPLIQYLEQINSFSELMHKYKLNNYN----SFSKGILNLREICLNQLGKLCL 393 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN 620 I+T EG N GL+ S + + + + G ++ + + + +++ +++++ Y+I N Sbjct: 394 IDTTEGINCGLVVSFAKHIRIYKKGIIQVYFSSIFKNKTKEFLNFKTSLDQELYLIQFNN 453 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 NL + + + + +K + + + + S +LIPF++++D R L Sbjct: 454 INLRKIKYLMN-VRLVYNKNNFRIKFFSNKKSILLEFTDLFSFTENLIPFIKYNDPARCL 512 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 MGA MQ Q+VP L K V TG E+ + S T A + G+V + +I IK + Sbjct: 513 MGAKMQSQSVPLLNKKKSFVITGYEKEIITKSDTTIKALQEGIVLNASSLKIHIK----D 568 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 ++ E +Y L+KY +SNQNT I+Q P V GE V +L E A+G N+ Sbjct: 569 LFNREI---VYYLSKYKKSNQNTIIHQKPLVWNGERVFTNQLLTQHQDIIDSEFAIGNNL 625 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV-SRDTKLGPEEITADIPNVGE 859 + + GY+FED+++VS+RV+ + F+++H+ + + E T +IP Sbjct: 626 LFYYGNFCGYDFEDAVIVSKRVLYQQLFSSLHMDIYEFNFCYNNENDIEFSTLEIPKQSY 685 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTP-KGETQLTPEEKLLRAIFGEKASDVKDSSL 918 LD GI+ G ++ G IL+ K+ K KL+ +IFG+ ++KD+SL Sbjct: 686 YIKKNLDSLGIIKEGEKILTGSILLTKIKVAKPTYTYKSIFKLIYSIFGKTIRNIKDNSL 745 Query: 919 RVPNGVSGTVIDVQVF--TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + G SG V +++F K K K + G + Sbjct: 746 YIQTGKSGRVSKIELFLVNISSRHKYKTYNNSYLKCRIFICKQRFLTVGDKLCGRYGNKG 805 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 109/414 (26%), Positives = 173/414 (41%), Gaps = 40/414 (9%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-GVEA 986 + + E D +E + K + L I++ G ++L+ V Sbjct: 658 MDIYEFNFCYNNENDIEFSTLEIPKQSYYIKKNLDSLGIIKEGEKILTGSILLTKIKVAK 717 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + + + + L Q + + +L Sbjct: 718 PTYTYKSIFKLIYSIFGKTIRNIKDNSLYIQTGKSGRVSKIELFLVNISSRHKYKTYNNS 777 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 ++++ +R + GDK+ GR+GNKG++S I D+P+ +N DI++ LG+PSR Sbjct: 778 YLKCRIFICKQRFLTVGDKLCGRYGNKGILSYIAENADLPFLQNSFYPDIIVGALGIPSR 837 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQ+ E +G + +I Sbjct: 838 MNLGQLFEALVGKISFSYNIRILPSFTTSSN----------------------------- 868 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 L N K + +F+ K K L + G+ + DGRTG + + V Sbjct: 869 -----LYFNYLKILIYNFLMFNNFK----KGFNWLYNFNLPGKFIIRDGRTGVKLKSSVL 919 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G KL HL+ DK+H R+TG Y+ + QQPL GK GGQRFGEME+WALEA+GA+Y Sbjct: 920 CGVSRYSKLIHLIKDKLHFRTTGPYTEILQQPLKGKKNLGGQRFGEMEIWALEAFGASYN 979 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIV-DGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 L+E+L KSDD R + + ++ + ESF V+LKE L +N+EL Sbjct: 980 LKEILNYKSDDCFARNNLKEYLLFRNTELQNSTITESFRVILKEFNGLILNLEL 1033 Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 56/431 (12%), Positives = 136/431 (31%), Gaps = 37/431 (8%) Query: 113 TVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 + + + + E+P +NG +++ +S+ S G+FF+ + ++ +Y Sbjct: 91 KTNKVFFKNLLIFELPKYNSYNYCYLNGLKKIFISKYFTSNGIFFNKYLKRKYN----IY 146 Query: 173 NARIIPYRGSWLDFEFDPK-DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE 231 A+++ ++ + D K +++ I + K + L L IL Sbjct: 147 YAKLLLTNSNFFNIILDLKLKQIYLSI-KNLKFNFILFLYYLGIKNTDILKY-------- 197 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 ++ + + + L D+ N K+ ++ + + + + K + + Sbjct: 198 ---SRYKNSKILKLLIFSALQTDLVNNKKIILKNLNYLKSIFKLTILNKNYKNFIISKDK 254 Query: 292 IAGKV----VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 + I + L +++ + +K I T+ + + Sbjct: 255 LNYNYGDFSKNNLLIIDFIFILDLLLDLQSKKLCFKTIDHLDNKHINTIGNYFQHNFKFY 314 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF-FSEDRYDLSAVGRMKFN 406 + N + ++ E E + FSE + F+ Sbjct: 315 LKKFISIIPNLIKLQKFSLLKVYNFKELLILNPLIQYLEQINSFSELMHKYKLNNYNSFS 374 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR-RIRSVGEMAENQFR 465 + +L L K +ID + I G RI G + + F Sbjct: 375 KGILNLREICLNQLGKLCLIDTTE---GINCGLVV-----SFAKHIRIYKKG-IIQVYFS 425 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQ-DMINAKPISAAVK----EFFGSSQLSQFMDQNNP 520 + + D + + Q + IN + I + + ++ F ++ + Sbjct: 426 SIFKNKTKEFLNFKTSLDQELYLIQFNNINLRKIKYLMNVRLVYNKNNFRIKFFSNKKSI 485 Query: 521 LSEITHKRRIS 531 L E T + Sbjct: 486 LLEFTDLFSFT 496 >UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB2_LEPTE Length = 880 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 141/411 (34%), Positives = 216/411 (52%), Gaps = 44/411 (10%) Query: 927 TVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 VI +++ + ++ + L + +++ D + I++ G + + ++V+ Sbjct: 496 VVIGGEIYRPGNKLQINLEYLNFKYGFVQKNNYDHLDNDGIIKLGTWVKPGDIIVSKLRP 555 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 + P ++ + L + + D ++ + + D+ Sbjct: 556 IGPHNPTPLEKLVAAILKKKFDDYKNAAFYTPKDVYGRIVGIEILEPKNLPS---DVEYS 612 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 + V+ YL KRRI GDKMAGRHGNKG+IS I P +DMPY +GTPVD+VLNPLGVPS Sbjct: 613 GIGRVEFYLVDKRRIFVGDKMAGRHGNKGIISNILPKQDMPYLPDGTPVDMVLNPLGVPS 672 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RMN+GQ+ ET LG+A K + + G + + + S Sbjct: 673 RMNVGQVFETLLGLAGKYLHQHFKVTPFDE--------------VYGPEASRSLVYSKLY 718 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 + + + + D + G+ R++DG+TG F++ V Sbjct: 719 EARLKT-------------------------DQNWIFDPKSPGKTRIFDGQTGANFDQAV 753 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 T GY YMLKL HLVD K+HARSTG Y+LVTQQP+ G+++ GGQR GEME WALEA+GA+Y Sbjct: 754 TAGYAYMLKLIHLVDHKIHARSTGPYALVTQQPVRGRSRAGGQRLGEMEFWALEAFGASY 813 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 LQEM+T+KSDD+ GRT+++ +I++ PESF V + E+RSLG+N Sbjct: 814 NLQEMMTIKSDDILGRTQVFDSILNSKPIQNSH-PESFRVFINELRSLGVN 863 Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 53/122 (43%), Positives = 75/122 (61%) Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 I+ + A + Y L Y RSNQ TCI Q P V LGE V++GD L D ++ Sbjct: 37 KNIIPLNVDKARDVYRAHENSYFLDHYIRSNQATCITQRPSVKLGEWVQKGDFLCDTTAS 96 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 GELALG+N+ VA+MPW+GYNFED+ILV+E ++ D +T++H+++ +T GPE Sbjct: 97 SAGELALGKNILVAYMPWHGYNFEDAILVNETLIIYDIYTSLHLEKFEIEIENTNWGPEI 156 Query: 850 IT 851 I Sbjct: 157 IK 158 Score = 90.3 bits (222), Expect = 4e-16, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 3/161 (1%) Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 ++ E + V + LD GI+ +G V GDI+V K+ P G TP EK Sbjct: 507 NKLQINLEYLNFKYGFVQKNNYDHLDNDGIIKLGTWVKPGDIIVSKLRPIGPHNPTPLEK 566 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI--EEMQLKQAKK 958 L+ AI +K D K+++ P V G ++ +++ + D I E L ++ Sbjct: 567 LVAAILKKKFDDYKNAAFYTPKDVYGRIVGIEILEPKNLPSDVEYSGIGRVEFYLVDKRR 626 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + G I +L + D P D L Sbjct: 627 IFVGDKMAGRHGNKGIISNILPKQDMPY-LPDGTPVDMVLN 666 >UniRef50_B2W234 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W234_PYRTR Length = 1167 Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 129/864 (14%), Positives = 284/864 (32%), Gaps = 96/864 (11%) Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN- 258 + P LR + Y ++D+ + + +++ +++ +P L+ + + Sbjct: 171 KSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCVLAGKNDN 230 Query: 259 ------------GKVYVEKGRRITARHIRQLEKDDV------KLIEVPVEYIAGKVVAKD 300 G ++ +G+ QL K+ V +++ V + K Sbjct: 231 DMAVMGECPLDPGGYFITRGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHERRTKT 290 Query: 301 YIDESTGELICAANMELS-LDLLAKLSQSGHKRIETL-------FTNDLDHGPYISETLR 352 Y+ + G + N + ++ + G + + + D+ E Sbjct: 291 YVIQKKGLMYLRHNTLSEEIPIVFVMKALGVASDKEILTMVAGEDSAYQDNFSINFEACA 350 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 + + AL I +R + P + Y L A+ + Sbjct: 351 KEEIFTQERALEYIGHRVRLVKKPLGTSR----------NRNYHLEAIECLSNVVLPHVP 400 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 + + + ++++ VDD D++GN+R+ G+M F R Sbjct: 401 VEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLELSGQMLSLLFEDHFKRFN 460 Query: 473 --------RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS--QF-MDQNNPL 521 + +K+ + + D ++ I+ V+ + S +F MD+ Sbjct: 461 HDFKLSIDKVLKKPVRAQEFDAFSHFS-VHKNHITMGVERAIATGNWSLKRFKMDRAGVT 519 Query: 522 SEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 ++ I+ALG + R R + P+ +G +C +TPEG GL+ +L+ Sbjct: 520 HVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLA 579 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE---EGNYVIAQANSNL---DEEGHFV 630 + + P RK+ + +I L+ + EG Y + + + D HF+ Sbjct: 580 LMTHITTEDDDD-PVRKIVFMLGAQDICSLTGEDIHAEGVYSLCLNGTPIAVTDRPKHFL 638 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 R G S F+ +D+ D + + + + + R+ + + + Sbjct: 639 NSFRGLRRMGRVSEFTSIHIDH-DHCEVHIATDEGRICRPMIIVENQRSKVTSRYLKALR 697 Query: 691 PTLRADKPLVGTGMERAVA-VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG-- 747 + + G+ + + T +A + + I E+ P Sbjct: 698 KGTLDFEDFLTRGLVEYLDTNEENDTNIALKE--------TDINQHTTHLEIEPFTILGA 749 Query: 748 -IDIYNLTKYTRSNQNTCINQM-----PCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 + + +S +NT M V +P+ + + T +L GQN Sbjct: 750 VAGLIPYPHHNQSPRNTYQCAMDTLLYLMVYPQQPMVKTRTI---ELTKYDKLPAGQNAT 806 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG-PEEITADIPNVGEA 860 VA M ++GY+ ED++++++ +++ + G + I A + Sbjct: 807 VAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQLKTYANGTSDRINAGALDPDNK 866 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 + + GI +GA + GD + K P G ++ KD + Sbjct: 867 NHQAIGKDGIAQVGARIEAGDAYLLKSIPVDTA-------------GPPSNTYKDKPEKY 913 Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 N + V + + L + + + K S Q GL + + Sbjct: 914 KNPDYSYIDKTCVTENEAGVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPF 973 Query: 981 AGGVEAEKLDKLPRDRWLELGLTD 1004 + P + + Sbjct: 974 NDQGICPDIIMNPHGFPSRMTVGK 997 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 100/493 (20%), Positives = 168/493 (34%), Gaps = 96/493 (19%) Query: 876 EVTGGDIL--VGKVTPKGETQLTPEEK-------LLRAIFGEKASDVKDSSLRVPNGVS- 925 E+ IL V + P +P LL + + VK ++ + Sbjct: 740 EIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMDTLLYLMVYPQQPMVKTRTIELTKYDKL 799 Query: 926 --GTVIDVQVFTRDGVEKDKRALEIEEMQL-----KQAKKDLSEELQILEAGLFSRIRAV 978 G V V + G + + + + Q K +L+ G RI A Sbjct: 800 PAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQLKTYANGTSDRINAG 859 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA-----EQYDELKHEFEKKLEAKR 1033 + + + +D ++G E L + + +K + Sbjct: 860 ALDPD--NKNHQAIGKDGIAQVGARIEAGDAYLLKSIPVDTAGPPSNTYKDKPEKYKNPD 917 Query: 1034 RKITQGDDLAPG--VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 + + ++K+ RR + GDK + RHG KG I EDMP+++ G Sbjct: 918 YSYIDKTCVTENEAGVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPFNDQG 977 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 DI I+ H + +G + Sbjct: 978 ICPDI---------------IMNPHGFPSRMTVGKMM----------------------- 999 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 E++ + G F G+ ++ ++L +G+ Sbjct: 1000 ----------------ELLSGKAGVLNGTLEYGTAFGGSTVEDMSKILVDKGFSYTGKDY 1043 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 L G TGE + G +Y KL H+V DKMH+R+ G +++T+QP G+A+ GG R G Sbjct: 1044 LTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLG 1103 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EME L AYG G + K + MP + +L++E+ Sbjct: 1104 EMERDCLIAYGGQM--------------GYSGYCKLCESEKAVRKITMPYAAKLLIQELG 1149 Query: 1332 SLGIN--IELEDE 1342 S+ I I LEDE Sbjct: 1150 SMNIKVTIGLEDE 1162 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 70/446 (15%), Positives = 135/446 (30%), Gaps = 60/446 (13%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 R + P L L+ +DS+ F++ + + + RS + L Sbjct: 95 NTARDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKVNRFVRS-----DFDPKFLL 149 Query: 69 QYVSYRLGEP-------------VFDVQECQIRGVTYSAPLRVKL--------------- 100 +Y R+ P EC++R +TY+AP+ V + Sbjct: 150 EYTDIRVLAPNRQEEDDLDHHKSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIK 209 Query: 101 --RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFD 158 R+ I + MGE PL G F+ G E+VI+ Q + Sbjct: 210 IGRMPIMLKSNKCVLAGKNDNDMAVMGECPL-DPGGYFITRGQEKVILVQEQLNKNRVIV 268 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPATIILRALNY-T 216 + R + + K +++R + ++P +++AL + Sbjct: 269 ESAKGIMQASVTSSTH----ERRTK-TYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVAS 323 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 ++IL + + + + E + +V + K T+R+ Sbjct: 324 DKEILTMVAGEDSAYQDNFSINFEACAKEEIFTQERALEYIGHRVRLVKKPLGTSRNRNY 383 Query: 277 LEK-----DDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA---KLSQS 328 + +V L VPVE + A + L+ N +L D K + Sbjct: 384 HLEAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLEL 443 Query: 329 GHKRIETLFTNDLDHGP-----YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 + + LF + I + L+ A + + E Sbjct: 444 SGQMLSLLFEDHFKRFNHDFKLSIDKVLKKPVRAQEFDA----FSHFSVHKNHITMGVER 499 Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSL 409 +S R+ + G L Sbjct: 500 AIATGNWSLKRFKMDRAGVTHVLSRL 525 >UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0MW98_PHYIN Length = 1179 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 92/464 (19%), Positives = 151/464 (32%), Gaps = 97/464 (20%) Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 P G + V V + G + + + + + + ++ + + Sbjct: 764 YPLGTNAVVA---VISYTGFDMEDAMILNKSSYERGFGHASVYKQLTVDISSNGKQGSAT 820 Query: 980 VAGGVEAEKLD--------KLPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKL 1029 K D KL RD + +G + E ++ E + Sbjct: 821 SKKYFSNIKTDGSGDYCSTKLDRDGFPHIGQVVNHGDPVASWIDETTGLPSVQKHKESEP 880 Query: 1030 EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 + G+ + + L R GDK + RHG KGV+S + P DMP+ E Sbjct: 881 AIIEQVNMIGNSSSSSEFTKASIKLRFCRNPTIGDKFSSRHGQKGVMSILWPQADMPFSE 940 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 +G DI++NP PSRM +G ++E+ G + Sbjct: 941 SGISPDIIINPHAFPSRMTVGMLIESMAAKTGALKGKYM--------------------- 979 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 D + F E R+ LK G Sbjct: 980 ----------DATPFQFSEKDRV-------------------IDYFGSQLKEHGYNYMGS 1010 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 LY G +G + + +G +Y +L H+V DK R+TG + +T+QP+ G+ + GG R Sbjct: 1011 EPLYSGISGTVMQADIYIGVVYYQRLRHMVSDKSQVRATGPMNSLTRQPVKGRKKGGGIR 1070 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK-------------------------- 1303 GEME +L A+G A+ +Q+ L SD Sbjct: 1071 LGEMERDSLLAHGCAFLVQDRLLNCSDKHIATVCTNCGSLLSNATQRSTVETAGQGEIAV 1130 Query: 1304 --------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 G MP F L E+ ++ I + L Sbjct: 1131 AMKSKTQWYCTVCQTGESCQPVAMPYVFRYLANELAAMNIKMSL 1174 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 118/779 (15%), Positives = 247/779 (31%), Gaps = 98/779 (12%) Query: 341 LDHGPYISETLRVDPTNDRLSALVE-IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSA 399 L LR D N LSA VE I R + TR+ A + F Y Sbjct: 266 LTDREIYERVLRGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYVYDN 325 Query: 400 VGRMKFNRSLL-------REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR 452 + ++ LL + E + + +++KL G D+ D + N Sbjct: 326 MNNVEVGSKLLDDFLFVHIPKGEKGRTQKVELLCLMLRKLYAFAKGDVPEDNADSVMNHE 385 Query: 453 IRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAK-------PISAAVK 503 + G + + L A++ + + + D + + I A+ Sbjct: 386 LLLPGHLYLMIMKEKLQESLVAMRANILKETQNKKRAVVMDQVFLRKMWERTPNIGNAMT 445 Query: 504 EFFGSSQLSQ--------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 F + L ++ N +H R ++ G E VR Sbjct: 446 YFLNTGNLRSSSGLDLLQIAGYTIVAEKLNYYRYFSHFR---SVHRGQFFTEMKTTAVRK 502 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYA----------------QTNEYGFL----ET 589 + P +G +CP+ TP+G GL+N L+V + FL Sbjct: 503 LLPDSWGFLCPVHTPDGSPCGLLNHLAVECELVCHPAFKADDYLQQEVKLARFLASLGMI 562 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE---SSLFS 646 P DG + YL + G + + + + +S E + + S Sbjct: 563 PTSGYADGALIVPYSYLPVMMNGKVLGGAPAEVCKRIAEVLRKVKSAKSSEERDANGIVS 622 Query: 647 RDQVDYM------DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 +V + + + A + ++ D R M++ + + Sbjct: 623 NLEVCLILPTRGGPFPGLYLSADAARMSRPVKQMDTKRIEYIGPMEQVFMDIACTKDDIR 682 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 + + ++ + + D ++ + + +M G +++ RS+ Sbjct: 683 PATTHMEIKPTNM---LSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPAHSIV--HRSD 737 Query: 761 QNTCINQMPCVS--LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 Q P + E + + E LG N VA + + G++ ED++++ Sbjct: 738 NKMYRIQSPQIPIVQNERLREYQL---------DEYPLGTNAVVAVISYTGFDMEDAMIL 788 Query: 819 SERVVQEDRFTTIHIQELACVSRDT-KLGPEEITADIPNV-----GEAALSKLDESGIVY 872 ++ + ++L K G N+ G+ +KLD G + Sbjct: 789 NKSSYERGFGHASVYKQLTVDISSNGKQGSATSKKYFSNIKTDGSGDYCSTKLDRDGFPH 848 Query: 873 IGAEVTGGDILVG---------KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 IG V GD + V E++ E++ +S+ +S+++ Sbjct: 849 IGQVVNHGDPVASWIDETTGLPSVQKHKESEPAIIEQVNMIGNSSSSSEFTKASIKLRFC 908 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR--IRAVLVA 981 + T+ D F+ +K ++ + + ++ +S ++ I SR + ++ + Sbjct: 909 RNPTIGDK--FSSRHGQKGVMSILWPQADMPFSESGISPDIIINPHAFPSRMTVGMLIES 966 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 + L D + + +++ E + Q D Sbjct: 967 MAAKTGALKGKYMDATPFQFSEKDRVIDYFGSQLKEHGYNYMGSEPLYSGISGTVMQAD 1025 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 67/433 (15%), Positives = 142/433 (32%), Gaps = 72/433 (16%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF--PIQSYS-GNSELQYVSYRLGEP- 78 + L+S LDSF F+ + GL+ A + P++ + ++ + ++G P Sbjct: 40 KLQKLVSPHLDSFNFFLTE------GLDLAVADMCKVPVELPNQHRMDIWIENAQIGYPT 93 Query: 79 ---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 EC+ RGV+Y+APL V L + G+ + Q V +GEIP+ Sbjct: 94 TENQITGEQKLLPSECRQRGVSYTAPLVVTLA------RSFGGSQNVERLQRV-VGEIPI 146 Query: 130 MTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTH 165 M + G F+ NG ER V L + + Sbjct: 147 MVRSKRCHLNGMAPTDLVKAREEANEMGGYFICNGNER-CVRLLQMPRRHHIMAVRRGAF 205 Query: 166 SSGKVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRK---LPATIILRAL-N 214 ++ LY + + + + N VR +++ +P ++L+AL Sbjct: 206 ANRGDLYTELAVFMKCVKRDQSAVTVTVHYLQDGNATVRFGVKKQEFMIPVGLVLKALYP 265 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR-RITARH 273 T +I +E+V+ +N V LR + + R + Sbjct: 266 LTDREI----YERVLRGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPY 321 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 + + ++ +++ + + EL+C +L Sbjct: 322 VYDNMNNVEVGSKLLDDFLFVHIPKGEKGRTQKVELLCLMLRKLYA---FAKGDVPEDNA 378 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED 393 +++ ++L ++ + + + L A+ + + ++ E Sbjct: 379 DSVMNHELLLPGHLYLMIMKEKLQESLVAMRANILKETQNKKRAVVMDQVFLRKMW--ER 436 Query: 394 RYDLSAVGRMKFN 406 ++ N Sbjct: 437 TPNIGNAMTYFLN 449 >UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QD43_LEIMA Length = 1132 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 129/925 (13%), Positives = 280/925 (30%), Gaps = 105/925 (11%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF---DPKDNLFVRID 199 R+ Q G + + Y +I +D ++ D + V D Sbjct: 76 RICRPQEIVGKGHIPKLVTPQECRIRDMTYRGDMI------VDVQYTSRDRSRAMLVEKD 129 Query: 200 RR-RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 + +P + + N + +L + E F I+ Sbjct: 130 VKIGTIPIMLKSKCCNLYRKTREELV----------------NMRECPLDPGGYFIIKGV 173 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 KV + + ++ R I + ++ V + + ++ + Sbjct: 174 EKVCLVQEQQSKNRVIIEADEHGNISAHV-QSKTHYSISKCAVTFKKGSIVLTHRSFTED 232 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPY------ISETLRVDPTNDRLSALVEIYRMMRP 372 + ++ L G + + + + E R+ + AL I + Sbjct: 233 IPIIVVLKALGLENDQHITQCIGTLPEFQKILFPCFEEARLLNVVTQNDALQYIGEKRKE 292 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 E + + L+ V + +++ + + + +++ + Sbjct: 293 TVWEAEETQQRQVNRSKADKAAEFLANVLLCHIREAQVQK--DWNFRHKAFYVCFMVRGM 350 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQ 490 I+ +D+ D GN+R + G + F L + R VK + L D+ P Sbjct: 351 IEASFDTSLLDERDFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLSRKDSTRPF 410 Query: 491 DM-----INAKPISAAVKEFF--GSSQLSQF-MDQNNPLSEITHKRRISALGP-----GG 537 ++ + I ++ G L +F M++ ++ I++LG Sbjct: 411 NVKQLMESKMEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASS 470 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 + R R + P+ +G VCP +TPEG + GL+ + + +Q R Sbjct: 471 FEKTRKVSGPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVTLDLNDN-YVRAAAHA 529 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM---D 654 + +EI ++ + +Y N L + L S V Sbjct: 530 LGVEEIDTVTPTDFLHYCTVFLNGTLIGIHRYPNRLCAGIRTLRRSGRLHPHVSISTQPR 589 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG- 713 T Q+ S G ++ L + + + + L + G+ V V+ Sbjct: 590 QRTVQIGSDGGRIVRLLIIVRDGKPAVTSAHLDRLRDRLCTHNDFLAEGLTEYVDVNESN 649 Query: 714 ----------------------VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 ++ + G++ Y ++ + M G+ + Sbjct: 650 DCLIAVYPADIGPYTTHLEVEPLSLLGVVAGIIPYPHHNQSARNTFQSAM--GKQALGTV 707 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 L +Y R++ + P P+ R + T +L G N V M ++GY+ Sbjct: 708 ALNQYIRADTVLLLGAYPQ----RPLCRTKAM---SLTHYEKLGAGINAMVCVMSYSGYD 760 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP-EEITADIPNVGEAALSKLDESGI 870 ED+ + ++ + + +++ G + I N G L+ G+ Sbjct: 761 IEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDVILPPEKNSGTGKFKALNPDGV 820 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 GA V D+LV K TP P + L V Sbjct: 821 AGKGALVQQYDVLVNKFTPVAGGDPRP------------------APLVYKYPQPAVVDH 862 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 V + ++ + ++ ++ + + G + ++ + + Sbjct: 863 VIISPPGDYDRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERG 922 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLA 1015 P G +L +L Sbjct: 923 MCPDMIMNPHGFPSRMTVGKLLELV 947 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 102/490 (20%), Positives = 167/490 (34%), Gaps = 87/490 (17%) Query: 869 GIVYIGAEVTGGDILV------GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 G V + + +L+ + LT EKL I S + Sbjct: 705 GTVALNQYIRADTVLLLGAYPQRPLCRTKAMSLTHYEKLGAGINAMVCV----MSYSGYD 760 Query: 923 GVSGTVIDVQVFTRDGVE---KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 V + R K +++E+ + L E + + Sbjct: 761 IEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDVILPPEKNSGTGKFKALNPDGV 820 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 G ++ D L G D + + + ++ Sbjct: 821 AGKGALVQQYDVLVNKFTPVAG-GDPRPAPLVYKYPQP---------AVVDHVIISPPGD 870 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D + V + +KV R +PGDK + RHG KGV+ I DMP++E G D+++N Sbjct: 871 YDRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMN 930 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G ++ K+ Sbjct: 931 PH----------------GFPSRMTVGKL------------------------------- 943 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 E++ +G F G I + L G+ Y G TGE Sbjct: 944 -------LELVCSKAAALRGSMGDGTAFGGESADSISQQLLSFGYNYHGKDVFYSGITGE 996 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + V G +Y +L H+V DKMHARSTG S++T+QP G+++ GG R GEME + Sbjct: 997 LMQGYVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMV 1056 Query: 1280 AYGAAYTLQEMLTVKSD----DVNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKE 1329 YGA+ L E L + SD D+ + MP +F +L++E Sbjct: 1057 GYGASNLLNERLLISSDMFTADICHVCGNLGYNNRCTYCKTKGTTSKVNMPYAFKLLIQE 1116 Query: 1330 IRSLGINIEL 1339 ++ +G+++ L Sbjct: 1117 LQGMGVSLRL 1126 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 67/470 (14%), Positives = 136/470 (28%), Gaps = 69/470 (14%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAF--RSVFPIQSY-SGNSE 67 RK P ++ + +L+ + SF IE + L+ S I+S + Sbjct: 16 QRKKLEMLPALMGMRGILNHHIASFDHLIEVE------LQRILLNESNVEIKSTVDPDFV 69 Query: 68 LQYVSYRLGEPV-----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 ++Y + R+ P QEC+IR +TY + V ++ +R Sbjct: 70 IRYQNIRICRPQEIVGKGHIPKLVTPQECRIRDMTYRGDMIVDVQYTSRDRSR-----AM 124 Query: 117 IKEQEVYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRS 152 + E++V +G IP+M G F+I G E+V + Q +S Sbjct: 125 LVEKDVKIGTIPIMLKSKCCNLYRKTREELVNMRECPLDPGGYFIIKGVEKVCLVQEQQS 184 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRA 212 + S V Y S F + +P ++L+A Sbjct: 185 KNRVIIEADEHGNISAHVQSKTH---YSISKCAVTFKKGSIVLTHRSFTEDIPIIVVLKA 241 Query: 213 LNYTTEQ-ILDLFFEKVIFEIRDNKLQMELVPERLRGET--ASFDIEANGKVYVEKGRRI 269 L +Q I F+ E + + + E + E Sbjct: 242 LGLENDQHITQCIGTLPEFQKILFPCFEEARLLNVVTQNDALQYIGEKRKETVWEAEETQ 301 Query: 270 TARHIRQLEKDDVKLIEV----------PVEYIAGKVVAKDYIDESTGELICAANMELSL 319 + R + + + + A G + + + L Sbjct: 302 QRQVNRSKADKAAEFLANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDTSLLD 361 Query: 320 DLL---AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 + K ++ + LF + L + +T + + S + + + Sbjct: 362 ERDFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLSRKDSTRPFNVKQLMESKME 421 Query: 377 TREAA-ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + + + R++++ G + L G Sbjct: 422 VIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASSF 471 >UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 Tax=Amniota RepID=RPA2_HUMAN Length = 1135 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 106/491 (21%), Positives = 169/491 (34%), Gaps = 91/491 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA------SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 P Q + KL R + D D P G + V V + G + Sbjct: 698 FPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMD-NYPIGTNAIVA---VISYTGYDM 753 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---LDKLPRDRWL 998 + + + + + + ++ + + G++ L KL D Sbjct: 754 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLP 813 Query: 999 ELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +G + L E + K+ +D G K V + + V Sbjct: 814 FIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRV 873 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R GDK A RHG KG++S++ P EDMP+ E+G DI+ NP G P Sbjct: 874 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP------------ 921 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + IG I +M + A D + F E Sbjct: 922 ---SRMTIGMLIESMAGKSA----------------ALHGLCHDATPFIFSE-------- 954 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + + E+LK G RLY G +G + E + +G +Y +L Sbjct: 955 -----------ENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLR 1003 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK R+TG+ VT QP+GG+ GG RFGEME AL A+G ++ L + L SD Sbjct: 1004 HMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 1063 Query: 1297 ----DVNGRTKM----------------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 V + + +P F + E+ Sbjct: 1064 RSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAEL 1123 Query: 1331 RSLGINIELED 1341 ++ I ++L+ Sbjct: 1124 AAMNIKVKLDV 1134 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 112/837 (13%), Positives = 243/837 (29%), Gaps = 109/837 (13%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + N L E + + + +R + Sbjct: 137 VPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRP 196 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL-- 321 + R V + V E+ A + + + L L Sbjct: 197 KWKTRGPGYTQY-----GVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGF 251 Query: 322 -LAKLSQSGHKRIETLFTNDLDHGPYISETLR-------VDPTNDRLSALVEIYRMMRPG 373 L L +I + ++ ++ + + + L + R Sbjct: 252 ALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFR-- 309 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 D Y FN+ + S + + +KL Sbjct: 310 -------------VKLNVPDWYPNEQAAEFLFNQCICIH--LKSNTEKFYMLCLMTRKLF 354 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV------RVERAVKERLSLGDLDTL 487 + G+ D+ D L N+ + + G++ + L ++ K + + ++T Sbjct: 355 ALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTD 414 Query: 488 MPQDMINAKP-ISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISA 532 + ++ + F + L D+ N + ++H R Sbjct: 415 NLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFR---C 471 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 + G + VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 472 VHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIP 531 Query: 593 KVTDGVVTDEIHYLS--------AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 + + I + ++ + D + L + E + Sbjct: 532 ALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDK--DLAPGIADSLRHFKVLREKRI 589 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 +V + ++ + S+ L F R + + ++ + + Sbjct: 590 PPWMEVVLIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIF 647 Query: 705 ERAVAVDS-------GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYT 757 E V + ++ + + D ++ + + +M G + LT Sbjct: 648 EDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL--LTYQD 705 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 RS+ Q P L P + D D +G N VA + + GY+ ED+++ Sbjct: 706 RSDNKLYRLQTPQSPLVRPS-----MYDYYDMDN--YPIGTNAIVAVISYTGYDMEDAMI 758 Query: 818 VSERVVQEDRFTTIHIQELACVS-RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 V++ + + K G + I L KLD+ G+ +IGA+ Sbjct: 759 VNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAK 818 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 + GD P L GE + + + V +++V + Sbjct: 819 LQYGD---------------PYYSYLNLNTGESFV------MYYKSKENCVVDNIKVCSN 857 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 D + + I + + + G+ SR+ A + + +P Sbjct: 858 DTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLW---PAEDMPFTESGMVP 911 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 81/250 (32%), Gaps = 61/250 (24%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVF- 80 + L ++SF GL A +++ P + + + + + + P Sbjct: 35 LQELTRAHVESFNY------AVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVP 88 Query: 81 ----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 EC+ R TY L + A G K I +Q ++G +P+M Sbjct: 89 KGTICKEANVYPAECRGRRSTYRGKLTADI------NWAVNGISKGIIKQ--FLGYVPIM 140 Query: 131 TDN------------------------GTFVINGTERVIVSQL--HRSPGVFFDSDKGKT 164 + G F+ING E+VI + R+ + K KT Sbjct: 141 VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKT 200 Query: 165 HSSGKVLYNARIIPYR----GSWLDFEFDPKDNL---FVRIDRRRKLPATIILRAL-NYT 216 G Y + R ++ + + F+ LP L+AL +++ Sbjct: 201 RGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFS 260 Query: 217 TEQILDLFFE 226 QI + Sbjct: 261 DYQIFQELIK 270 >UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta RepID=Q9C8S4_ARATH Length = 1114 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 89/456 (19%), Positives = 149/456 (32%), Gaps = 76/456 (16%) Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 P G + V + D + E + + +E + + + + Sbjct: 690 PTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSF 749 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 + ++ D +G + E ++ +H K + D Sbjct: 750 RRSTNKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVD 809 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLN 1099 + + + R GDK + RHG KGV S++ P DMP++ G D+++N Sbjct: 810 MKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIIN 869 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P PSRM I +LE+ G ++A + E ++ L Sbjct: 870 PHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLL-------- 921 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 ++ +LK G LY G G Sbjct: 922 --------------------------------VDDLGSMLKEKGFNHYGTETLYSGYLGV 949 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + + +G +Y +L H+V DK RSTG +T QP+ G+ + GG RFGEME +L Sbjct: 950 ELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLL 1009 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTK-----------------------------------M 1304 A+GA+Y L + L SD Sbjct: 1010 AHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVT 1069 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + MP F L E+ S+ I + L+ Sbjct: 1070 CYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQ 1105 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 114/836 (13%), Positives = 230/836 (27%), Gaps = 105/836 (12%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F + +V+ + E +D T +L Sbjct: 105 GYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLY 164 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV------------DPTND 358 N + + L I E+L T Sbjct: 165 YLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGDGAIGTQL 224 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 I +R TRE F L V L + Sbjct: 225 VRERAKIILDEVRDLGLFTREQCRKHLGQHFQP----VLDGVAEAVLRDYLFVH--LDND 278 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE----MAENQFRVGLVRVERA 474 + +I +++KL + + D+ D L N+ I G + + L + + Sbjct: 279 HDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSL 338 Query: 475 VKERLSLGDLD-----TLMPQDMINAKP---ISAAVKEFFGSSQLS-------------- 512 +K+ L + + +IN P I +++ + L Sbjct: 339 LKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETLLKTGALKTQSGLDLQQRAGYT 398 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 ++ N L ++ R A+ G VR + P +G +CP+ TP+G GL+ Sbjct: 399 VQAERLNFLRFLSFFR---AVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLL 455 Query: 573 NSLSVYAQTNEYGFLET---PYRKVTDGVVTDEIHYLSAIEEGNYVIA--QANSNLDEEG 627 N ++ ++ + + K+ VV V A ++ +G Sbjct: 456 NHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDG 515 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 V L + S R +V+ V + + +P + + R Sbjct: 516 QVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDL---EVGYVPTSMGGSYPGLYLASCPAR 572 Query: 688 QAVPTLRADKP---LVGTGMERAVAVDSGVT----------------AVAKRGGVVQYVD 728 P P + G VA + ++ + + D Sbjct: 573 FIRPVKNISIPSDNIELIGPFEQVANPINIIFISTFPATHEEIHPTGMISVVANLTPWSD 632 Query: 729 ASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 ++ + + +M L R++Q Q P PV R Sbjct: 633 HNQSPRNMYQCQMAKQTMAYSTQALQ--FRADQKIYHLQTPQ----SPVVRTKTYTTYSI 686 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL--- 845 E G N VA + G++ ED++++++ V+ Q D Sbjct: 687 ---DENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFD 743 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG-------DILVGKVTPKGETQLTPE 898 + N E ++D G+ +G ++ D + K P Sbjct: 744 SGSKSFRRSTNKAEHF--RIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPV 801 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 ++ + + +++R + + + D F+ +K + ++ + Sbjct: 802 IVDFVSVDMKSKKHPQRANIRFRHARNPIIGDK--FSSRHGQKGVCSQLWPDIDMPFNGV 859 Query: 959 DLSEELQILEAGLFSR--------IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 I+ F G + + +D P ++ +EE Sbjct: 860 TGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEE 915 >UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 Tax=Fungi/Metazoa group RepID=RPA2_YEAST Length = 1203 Score = 311 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 96/397 (24%), Positives = 144/397 (36%), Gaps = 64/397 (16%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ + + + + + I + F E Sbjct: 783 MDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDE-------WPKE 835 Query: 988 KLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 L+KL D +G EE + L + + H E + I GD+ Sbjct: 836 WLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLI--GDESN 893 Query: 1044 P-GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 L+ V + ++R Q GDK + RHG KGV S+ P DMP+ E G DI++NP Sbjct: 894 KFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHA 953 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 PSRM IG +E+ G A G D + Sbjct: 954 FPSRMTIGMFVESLAGKAGALHG-------------------------------IAQDST 982 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + E D E L G +Y G TGE+ Sbjct: 983 PWIFNE-------------------DDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELR 1023 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + VG +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G Sbjct: 1024 ADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHG 1083 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 ++ LQ+ L SD + Q P + Sbjct: 1084 TSFLLQDRLLNSSDYTQASVCRECGSILTTQQSVPRI 1120 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 126/920 (13%), Positives = 286/920 (31%), Gaps = 87/920 (9%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 LP + + +L K + + + + +R ++ Sbjct: 161 LPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRM----LIVQRRNHPMA 216 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 R P + V+ D E + ++ Sbjct: 217 IIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVL-HYLNDGQVTFRFSWRKNEYLVPVVM 275 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 L H +F D G + ++ D L + Y ++ + + Sbjct: 276 ILKALCHTSDREIF--DGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDK 333 Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVD 443 S D+ DL VG+ +R +L + ++ +++KL + G+ D Sbjct: 334 FRVVFQASPDQSDLE-VGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPD 392 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER----------LSLGDLDTLMPQDMI 493 + D ++ + G + + + + + + ++ D + M Sbjct: 393 NPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMR 452 Query: 494 NAKPISAAVKEFFGSSQL-SQ-------------FMDQNNPLSEITHKRRISALGPGGLT 539 + I + ++ F + L SQ ++ N I+H R + G Sbjct: 453 VNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMV---HRGSFF 509 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 + VR + P +G +CP+ TP+G GL+N + + + + + + Sbjct: 510 AQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLG 569 Query: 600 TDEIHY-------LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 + L ++ +I + ++ + L + +G++ D Sbjct: 570 VAPASHTFAAGPSLCCVQIDGKIIGWVS--HEQGKIIADTLRYWKVEGKTPGLPIDL--E 625 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAV 710 + L F H R + + ++ + P + + T E V Sbjct: 626 IGYVPPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNV 685 Query: 711 DSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 + ++ + + D ++ + + +M G L RS+ Sbjct: 686 HTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALC--HRSDNKLYR 743 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 Q P+ + + L D D G N VA + + GY+ +D++++++ + Sbjct: 744 LQTGQ----TPIVKAN-LYDDYGMDN--FPNGFNAVVAVISYTGYDMDDAMIINKSADER 796 Query: 826 DRFTTIHIQELACVSRDTKLGPEEIT----ADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 + + + IT + L KLDE G+ YIG V GD Sbjct: 797 GFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGD 856 Query: 882 IL-------VGKVTPKGETQLTPEEKLLRAIFGEKASDVKD---SSLRVPNGVSGTVIDV 931 + + K K P + G++++ ++ S++ + + D Sbjct: 857 PICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDK 916 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR--IRAVLVAGGVEAEKL 989 F+ +K + + + + ++ + ++ I SR I + + +A L Sbjct: 917 --FSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGAL 974 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 + +D + D+ + + + H E G++L + Sbjct: 975 HGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMY-----SGATGEELRADIYVG 1029 Query: 1050 VKVYLAVKRRIQPGDKMAGR 1069 V Y ++ DK R Sbjct: 1030 VVYYQRLRH--MVNDKFQVR 1047 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 98/746 (13%), Positives = 217/746 (29%), Gaps = 144/746 (19%) Query: 28 LSIQLDSFQKFIEQDPEGQYGL------EAAFRSVFPIQSYS---------GNSELQYVS 72 + + SF E G L E P+ S + Sbjct: 42 VQPHIGSFNALTEGPDGGLLNLGVKDIGEKVIFDGKPLNSEDEISNSGYLGNKLSVSVEQ 101 Query: 73 YRLGEP------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 + +P E + R +Y L +KL+ + E V+D Sbjct: 102 VSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDC--- 158 Query: 121 EVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVF 156 G +P+M + G F++NG E++I + + Sbjct: 159 ----GGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNHP 214 Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRRK---LPA 206 + + ++ Y+ I R D + + R R+ +P Sbjct: 215 M-AIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPV 273 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD-IEANGKVYVEK 265 +IL+AL +T++ F+ +I + + + LRG + ++ +V Sbjct: 274 VMILKALCHTSD---REIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYL 330 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 G + ++ D+++ + ++ I + KD + L+ SL Sbjct: 331 GDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLV----A 386 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 + + ++ G ++ + + ++ L ++ RM + Sbjct: 387 GECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYM 446 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 + + S + +L+ + +S ++ + V Sbjct: 447 SRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMV--- 503 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEF 505 R +++ +L L P + P Sbjct: 504 -----HR------------GSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSP-------- 538 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRI-SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 564 L+ F + ++ + RI S L G+ F P+ +C ++ Sbjct: 539 --CGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFAA---GPS----LCCVQI- 588 Query: 565 EGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV----VTDEIHYLSAIEEGNYVIAQAN 620 +G IG ++ + + Y KV + EI Y+ G Y Sbjct: 589 DGKIIGWVSH-----EQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLYLF 643 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQV----------------DYMDVSTQQVVSVG 664 + + E + +QV +++ + ++S+ Sbjct: 644 GGHS---RMLRPVRYLPLDKEDIVGPFEQVYMNIAVTPQEIQNNVHTHVEFTPTNILSIL 700 Query: 665 ASLIPFLEHDDANRALMGANMQRQAV 690 A+L PF + + + R + M +Q + Sbjct: 701 ANLTPFSDFNQSPRNMYQCQMGKQTM 726 >UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 Tax=Coelomata RepID=RPA2_MOUSE Length = 1135 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 106/491 (21%), Positives = 168/491 (34%), Gaps = 91/491 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA------SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 P Q + KL R + D D P G + V V + G + Sbjct: 698 FPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMD-NYPIGTNAIVA---VISYTGYDM 753 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR-AVLVAGGVE--AEKLDKLPRDRWL 998 + + + + + + ++ + LV G + KL D Sbjct: 754 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLP 813 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEF--EKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +G E L E + K+ +D+ G K + + + + Sbjct: 814 SIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRI 873 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R GDK A RHG KG++S++ P EDMP+ E+G DI+ NP G P Sbjct: 874 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFP------------ 921 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + IG I +M + A D + F E Sbjct: 922 ---SRMTIGMLIESMAGKSA----------------ALHGLCHDATPFIFSE-------- 954 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + + E+LK G RLY G +G + E + +G +Y +L Sbjct: 955 -----------ENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLR 1003 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK R+TG+ VT QPLGG+ GG RFGEME AL A+G ++ L + L SD Sbjct: 1004 HMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 1063 Query: 1297 DVNGRTKM--------------------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 + + +P F + E+ Sbjct: 1064 RSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAEL 1123 Query: 1331 RSLGINIELED 1341 ++ I ++L+ Sbjct: 1124 AAMNIKVKLDV 1134 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 124/840 (14%), Positives = 248/840 (29%), Gaps = 123/840 (14%) Query: 220 ILDLFFEKVIFEIRDNKLQMELVPERLRGET--------ASFDIEANGKVY---VEKGRR 268 I+ F V ++ + +P R+ E F I KV +E R Sbjct: 129 IIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPRRN 188 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKV-------VAKDYIDESTGELICAANMELSLD- 320 +R K + + Y++ T L EL Sbjct: 189 FPVAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLP 248 Query: 321 ---LLAKLSQSGHKRIETLFTNDLDHGPYISETLR-------VDPTNDRLSALVEIYRMM 370 L L +I + + ++ + + + L + Sbjct: 249 LGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECF 308 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 R D Y N+ + S + + Sbjct: 309 R---------------VKLSLPDWYPNVEAAEFLLNQGICIH--LQSNTDKFYLRCLMTR 351 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEM----AENQFRVGLVRVE-----RAVKERLSL 481 KL + G+ D+ D L N+ + S G++ + + LV ++ RA K +S+ Sbjct: 352 KLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSI 411 Query: 482 GDLDTLMPQD------------MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 + + + + S F S L D+ N L ++H R Sbjct: 412 NNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLEDSGLCVVADKLNFLRYLSHFR- 470 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 + G + VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 471 --CVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFGDTA 528 Query: 590 PYRKVTDGVVT--------DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 + G+ + ++ + D + L + E Sbjct: 529 SIPALLCGLGVTGADTAPCRPYSDCYPVLLDGVMVGWVDK--DLAPEVADTLRRFKVLRE 586 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 + +V + ++ + S+ L F R + + R+ + + Sbjct: 587 KRIPPWMEVALIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNV 644 Query: 702 TGMERAVAVDSG-------VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 E V + ++ + + D ++ + + +M G + LT Sbjct: 645 AIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL--LT 702 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 RS+ Q P L P + D D +G N VA + + GY+ ED Sbjct: 703 YQNRSDNKLYRLQTPQSPLVRPC-----MYDFYDMDN--YPIGTNAIVAVISYTGYDMED 755 Query: 815 SILVSERVVQEDRFTTIHIQELACVS-RDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 +++V++ + + K G + + + + KLD+ G+ I Sbjct: 756 AMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPSI 815 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 GA++ GD P L GE + + + V +++V Sbjct: 816 GAKLEYGD---------------PYYSYLNLNTGEGFV------VYYKSKENCVVDNIKV 854 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 + D + + I + + + G+ SR+ A + + +P Sbjct: 855 CSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLW---PAEDMPFTESGMMP 911 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 67/455 (14%), Positives = 135/455 (29%), Gaps = 69/455 (15%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY--SGNSELQYVSYRLGEPVF- 80 + L +DSF GL A +++ P + L V + P Sbjct: 35 LQDLTRAHVDSFNY------AALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVP 88 Query: 81 ----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 EC+ R TY L + A G K I +Q ++G +P+M Sbjct: 89 KGTICKDLNVYPAECRGRKSTYRGRLTADIS------WAVNGVPKGIIKQ--FLGYVPIM 140 Query: 131 TDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHS 166 + G F+ING E+VI + F + Sbjct: 141 VKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPRRN-FPVAMVRPKWK 199 Query: 167 SGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE 226 S + Y + R + + +V + I + L + + F Sbjct: 200 SRGLGYTQFGVSMRCVREEHSAVNMNLHYVEN--GTVMLNFIYRKELFF----LPLGFAL 253 Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 K + D ++ EL+ + + ++ +E+G + + L + + Sbjct: 254 KALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECFRVKLS 313 Query: 287 VPVEYIAGKVVAKDYID--------ESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 +P ++ A+ ++ +T + M L LA+ + Sbjct: 314 LP-DWYPNVEAAEFLLNQGICIHLQSNTDKFYLRCLMTRKLFALARGECMDDNPDSLVNQ 372 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP-PTREAAESLFENLFFSEDRYDL 397 L G L+ N +S + + + + E +F ++ Sbjct: 373 EVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGTELTRPFEY 432 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 + +E SG+ D ++ ++ L Sbjct: 433 -LLATGNLRSKTGLGFLEDSGLCVVADKLNFLRYL 466 >UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VXL3_NAEGR Length = 1069 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 96/453 (21%), Positives = 152/453 (33%), Gaps = 91/453 (20%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGL----FSRIRAVLVAGG 983 V+ V +T +E + + E L G + Sbjct: 657 VVAVISYTGYDMEDAMIMNKTSYERGMMHGTVFKTEDIDLTEGTAFLTNRVFDKTEMDSD 716 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 +A++ + L D E+GL +E + + K +++ + Sbjct: 717 YQAKEFEDLDYDGLPEVGLPLDEGSIFANYYDPEKQKFMPMKWKDVDSATVHSVKVIATD 776 Query: 1044 PGVLKIVK---VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 P K VK + + R GDK + RHG KGV+S + P EDMP+ + G DIV+NP Sbjct: 777 PSDYKKVKHASITFRLNRNPIIGDKFSSRHGQKGVLSILWPQEDMPFTDGGIVPDIVINP 836 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 PSRM IG ++E+ A G D Sbjct: 837 HAFPSRMTIGMLVESMSSKAGALHG-------------------------------YFPD 865 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + FS E + E LK G +Y G G Sbjct: 866 ATPFSFSE-------------------ENTAVDHFGEQLKKAGYNYHGNEVMYSGALGTT 906 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + + +G +Y +L H+V DK R G + +T QP+ G+ + GG R GEME AL A Sbjct: 907 LKADIYMGVVYYQRLRHMVSDKYQCRVGGPTNAITHQPVKGRKKAGGVRMGEMERDALVA 966 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKN--------------------------------- 1307 YGAA +++ +D N Sbjct: 967 YGAAAVVKDRFFDCTDSSTAIVCTCCNQMNTIVKPDMGTGSGPIVSGSGIGANLDELLCC 1026 Query: 1308 -IVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 H +P + L E+ ++G+N+++ Sbjct: 1027 VCKTNQHLRTIYIPYTTKYLHSELAAMGVNLKI 1059 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 121/966 (12%), Positives = 286/966 (29%), Gaps = 116/966 (12%) Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 G L K+ I+R + + ++ L K + + + Sbjct: 12 NYGGSLKATILLKNEETGAIERIPDIQLMEDFPVMINSSFCNLPKLSPKQKMLQGEEEHE 71 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRIT-ARHIRQLEKDDVKLIEVPVEYIAGKVV 297 E + + R + + + + + + ++V Sbjct: 72 SGGYFVVRGSEVVYRLLTQQRANFPFAITRPSWMGYKEDFTDKGILVRCRHPKTLITRLV 131 Query: 298 AKDYIDESTGELICAANMEL--SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 Y G + A + ++++ L LF Sbjct: 132 NIHY--RRDGVVFMRAGNPVPFYINIVLALKALRECSDRDLFLL----------LTAGTK 179 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 L +VE+ R P + +++ G + + + ++ Sbjct: 180 NKVTLDRVVELLGDFRKTFPTVQTREDAII------ALGTIYDPHGLRRLEEPVDKNKLI 233 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 SG D ++ ++KL +G+ +++D N + +VGE+ N + + + Sbjct: 234 KSGYEKFDFLVYCVQKLYKFVDGEIAEENLDDFDNHELLTVGEVLSNVIPLIIYNKIQLA 293 Query: 476 K---ERLSLGDLDTLMPQDM--------------INAKPISAAVKEFFGSSQLSQF---- 514 +L + T+ P + I +K + F +S Sbjct: 294 HGTCAKLLMKSATTMQPDMLEQKYLALFRDKCKSILSKACPNDINRLFSVGDVSVSAPFR 353 Query: 515 ------------MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 562 +++ N L I+H R A G + +R + P+ +G +CP+ Sbjct: 354 PELSQTRALFTKLERINFLRVISHFR---ATHRGIAFLDSNSTRMRRLTPSFWGFICPVH 410 Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV--------TDEIHYLSAIEEGNY 614 +P+G GL+N LS + + R V + + T++ +S +E Sbjct: 411 SPDGHLCGLVNHLSQTTEIVTHQAKPKELRSVVEMCLKLGMLPSSTEKCISVSIEDEAPV 470 Query: 615 VI---AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV---------DYMDVSTQQVVS 662 ++ + D+ + + L C+ G+ L ++ D + + + Sbjct: 471 MLDGAIIGKVSHDKLQNLADQLRYCKVSGKYGLPKFMEIACQPKYSAMDIPYLPQLNIFT 530 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 A + + + + + ++ + + + + ++ G Sbjct: 531 DIARAVRPVRYLPTGQDEWIGSAEQVFMNIAVTVEDIKPNTTHMEIDP---TNFMSFLGN 587 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC---INQMPCVSLGEPVER 779 + + + ++ + + +M +++ R + + Q P R Sbjct: 588 LTPFCNFNQSPRCIYQCQMAKQSMAAVFHSVD--HRVDTKLFDMKLPQKPL-------TR 638 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 D P E G N VA + + GY+ ED++++++ + + Sbjct: 639 TKHQTDLP---FDEFNNGCNAVVAVISYTGYDMEDAMIMNKTSYERGMMHGTVFKTEDID 695 Query: 840 SRDTKLGPEEITADIPNVGEA----ALSKLDESGIVYIGAEVTGGDILVG-------KVT 888 + D + LD G+ +G + G I K Sbjct: 696 LTEGTAFLTNRVFDKTEMDSDYQAKEFEDLDYDGLPEVGLPLDEGSIFANYYDPEKQKFM 755 Query: 889 P---KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 P K T + A VK +S+ + + D F+ +K + Sbjct: 756 PMKWKDVDSATVHSVKVIATDPSDYKKVKHASITFRLNRNPIIGDK--FSSRHGQKGVLS 813 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + + + + ++ I SR+ ++ + ++ + Sbjct: 814 ILWPQEDMPFTDGGIVPDIVINPHAFPSRMTIGMLVESMSSKAGALHGYFPDAT-PFSFS 872 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 E+ ++ EQ + + + G L + V Y ++ DK Sbjct: 873 EENTAVDHFGEQLKKAGYNYHG--NEVMYSGALGTTLKADIYMGVVYYQRLRH--MVSDK 928 Query: 1066 MAGRHG 1071 R G Sbjct: 929 YQCRVG 934 >UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=Q9FXG4_ARATH Length = 1233 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 89/456 (19%), Positives = 149/456 (32%), Gaps = 76/456 (16%) Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 P G + V + D + E + + +E + + + + Sbjct: 809 PTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSF 868 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 + ++ D +G + E ++ +H K + D Sbjct: 869 RRSTNKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVD 928 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLN 1099 + + + R GDK + RHG KGV S++ P DMP++ G D+++N Sbjct: 929 MKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIIN 988 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P PSRM I +LE+ G ++A + E ++ L Sbjct: 989 PHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLL-------- 1040 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 ++ +LK G LY G G Sbjct: 1041 --------------------------------VDDLGSMLKEKGFNHYGTETLYSGYLGV 1068 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + + +G +Y +L H+V DK RSTG +T QP+ G+ + GG RFGEME +L Sbjct: 1069 ELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLL 1128 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTK-----------------------------------M 1304 A+GA+Y L + L SD Sbjct: 1129 AHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVT 1188 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + MP F L E+ S+ I + L+ Sbjct: 1189 CYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQ 1224 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 123/984 (12%), Positives = 268/984 (27%), Gaps = 173/984 (17%) Query: 151 RSPGVFFDSDKGKTHSSGKVL---YNAR--IIPYRGSWLDFEFDPKDNLFVRIDRRRK-- 203 +P VF + +S K + R I Y G+++ ++ V D+ Sbjct: 96 ENPLVFAPQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQ 155 Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR-----GETASFDIEAN 258 P ++ + + L K + + R + N Sbjct: 156 FPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRN 215 Query: 259 GKVYVEKGRRITARHIRQLEKDDVK-----LIEVPVEYIAGKVVAKDYIDESTGELICAA 313 ++G A R + D G + G ++ A Sbjct: 216 SFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKAL 275 Query: 314 NMELSLDLLAKLS-----QSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 ++ L+ G + I + +R R + + Sbjct: 276 TNSCDEEIYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQ 335 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 F+ + + LS V L + + +I + Sbjct: 336 ---------------HFQPVLDGVKKESLSIVAEAVLRDYLFVH--LDNDHDKFNLLIFI 378 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGE----MAENQFRVGLVRVERAVKERLSLGDL 484 ++KL + + D+ D L N+ I G + + L + + +K+ L + Sbjct: 379 IQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNS 438 Query: 485 D---TLMPQDMINAKPISAAVKEFFGSSQLS--------------QFMDQNNPLSEITHK 527 +I I +++ + L ++ N L ++ Sbjct: 439 KFSFESRKSLLILFSLIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFF 498 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 R A+ G VR + P +G +CP+ TP+G GL+N ++ ++ Sbjct: 499 R---AVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDS 555 Query: 588 ETPYRKVTD--------------------------------------------GVVTDEI 603 + R +VT + Sbjct: 556 KGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVV 615 Query: 604 HYLSAIEEGNYVIAQAN-----SNLDEEGHFVE---DLVTCRSKGESSLFSRDQVDYMDV 655 Y+ ++ + + G + R S + + Sbjct: 616 SYIRRLKVEAPSVIPEDLEVGYVPTSMGGSYPGLYLASCPARFIRPVKNISIPSDNIELI 675 Query: 656 STQQVVSVGASLI-----PFLEHDDANRALMGANMQRQAVP----------TLRADKPLV 700 + V+ ++I P ++ ++ + L + P +L + + Sbjct: 676 GPFEQVANPINIIFISTFPGIQSNEKKKILPNQVFMEISCPDGGNGGRNNSSLATHEEIH 735 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 TGM VA + + D ++ + + +M L R++ Sbjct: 736 PTGMISVVAN------------LTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQ--FRAD 781 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q Q P PV R E G N VA + G++ ED++++++ Sbjct: 782 QKIYHLQTPQ----SPVVRTKTYTTYSI---DENPTGTNAIVAVLAHTGFDMEDAMILNK 834 Query: 821 RVVQEDRFTTIHIQELACVSRDTKL---GPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 V+ Q D + N E ++D G+ +G ++ Sbjct: 835 SSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTNKAEHF--RIDADGLPSVGQKL 892 Query: 878 TGG-------DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 D + K P ++ + + +++R + + + D Sbjct: 893 YPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGD 952 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR--------IRAVLVAG 982 F+ +K + ++ + I+ F G Sbjct: 953 K--FSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGG 1010 Query: 983 GVEAEKLDKLPRDRWLELGLTDEE 1006 + + +D P ++ +EE Sbjct: 1011 SLHGKFVDATPFRDAVKKTNGEEE 1034 >UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putative n=1 Tax=Babesia bovis RepID=A7AM79_BABBO Length = 1171 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 125/856 (14%), Positives = 277/856 (32%), Gaps = 121/856 (14%) Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 ++ + I ++ L+ E+L + + + A + + Sbjct: 185 YDPGGYFIIKGVEKVILMQEQLSKCRVIVETDVKKNIC--------ATVTSATAESKSRT 236 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 V D ++ A + ++ + +G + + Sbjct: 237 AVVYKNQKLYVRHNSFTDDVPLCIILKAMGVTTDEEIAQLIGTAGARE----YLPTGGDY 292 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPT--REAAESLFENLFFSEDRYDLSAVGR 402 E L + N R+ AL+ + R +RP +++ + + R Sbjct: 293 ILSIEDLYNEGINTRMDALLYVGRKVRPRPLAKGFFTSSKERLPKTNQNLIEDTHDILTR 352 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 + + +R + SG + + + ++++ + +GK +DD DH GN+R+ G++ Sbjct: 353 VLLSHIPMRNCRDFSGKIKS--LCLMARRVLSVASGKEPMDDKDHYGNKRLELAGQLISI 410 Query: 463 QFRVGLVRVERAVKERL--------------------SLGDLDTLMPQDMINAKPISAAV 502 F +K+++ D +P D+I + Sbjct: 411 LFEDLFKAFLGQLKKQIDATLTRHYEIVSNCHGGEQAKYPDCLVSLPTDIITRGMQATIS 470 Query: 503 KEFFGSSQLSQFM-DQNNPLSEITHKRRISALGPGGLTRERAGFE-------VRDVHPTH 554 G+ + +F +++ ++ IS L G +T+ + FE R + P+ Sbjct: 471 T---GNWNIKRFRIERSGVSQILSRLSYISCL--GMMTKTNSQFEKGRKVSKPRALQPSQ 525 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSA---IEE 611 G +CP +TPEG + GL+ +LS+ G +E + + + LSA ++ Sbjct: 526 LGLICPCDTPEGESCGLVKNLSLMNHVTTDGDIERLVELLYW-LGVESADALSARDCFDD 584 Query: 612 GNYVIAQANSNLDEEG----HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 V N + ++D+V R +G+ S F +Y + S G L Sbjct: 585 DRNVTVFLNGIIIGVHQNGKQLIKDVVALRRRGKISAFVSVFENYQQ-REVHISSDGGRL 643 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD---------------- 711 L + + L+ + Q V L +G+ + V+ Sbjct: 644 CRPLIVVENGKPLLTPKVLSQLVEGQIPLSKLFASGVLEWIDVNEENNTLIVMRESDITP 703 Query: 712 -------SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 S ++ + G++ + + ++ + M G Y + R + Sbjct: 704 KTTHLEISPMSMLGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGSIGY--NQLNRCDTILH 761 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 + V P+ + + +L GQN+ VA M + GY ED++++++ + Sbjct: 762 L----MVYPQRPLVTTKAI---QLVNFDKLPAGQNVIVAVMSYQGYEIEDAVVINKASSE 814 Query: 825 EDRFTTIHIQELACVSRD-----TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 ++ + + G I NV + L ++ +G +V Sbjct: 815 RGFSRCYSLRRVTVEIEKLNHAAERPGGLNNRPQITNVTP--VDDLTGDSVIGVGQKVKK 872 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 D L+ K+T Q +K + ++ V V T Sbjct: 873 DDTLLKKLTQTSTGQ------------------IKVTDIKYQFNQPAYVDRVMCITTIA- 913 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + ++ L+Q + + G + + + + +P Sbjct: 914 -----ESVMYKIMLRQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSEHGWVPDLIMNP 968 Query: 1000 LGLTDEEKQNQLEQLA 1015 G ++ +L Sbjct: 969 HGFPSRMTVGKMLELV 984 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 86/424 (20%), Positives = 152/424 (35%), Gaps = 66/424 (15%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 V+ Q + + +A + + ++ E++ L Sbjct: 794 VMSYQGYEIEDAVVINKASSERGFSRCYSLRRVTVEIEKLNHAAERPGGLNNRPQITNVT 853 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 +D L D + +G ++ L++L + + K + + + Sbjct: 854 PVDDLTGDSVIGVGQKVKKDDTLLKKLTQTSTGQIKVTDIKYQFNQPAYVDRVMCITTIA 913 Query: 1048 KIV--KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 + V K+ L R + GDK + RHG KGV+ I E++P+ E+G D++ Sbjct: 914 ESVMYKIMLRQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSEHGWVPDLI-------- 965 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 + H + +G + Sbjct: 966 -------MNPHGFPSRMTVGKML------------------------------------- 981 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 E++ + G+ F+ I+ L +G+ LY G TGE E + Sbjct: 982 --ELVAAKAAVLNGIFEDGTPFEADSLPAIERSLIKKGFHPAGKEILYSGITGEPLETLI 1039 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G MY KL H+V DK+HAR+ G +T+QP G+++ GG R GEME L AYGA+ Sbjct: 1040 FTGPMYYQKLKHMVSDKIHARAVGPRQSLTRQPTEGRSKDGGLRLGEMERDCLIAYGASG 1099 Query: 1286 TLQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 L E L + SD DV + +P + +L +E++++ I Sbjct: 1100 LLVERLMLSSDVFQMDVCHQCGFIGYDGWCAYCKQRGQTATVAIPYACKLLFQELQAMNI 1159 Query: 1336 NIEL 1339 + Sbjct: 1160 RPNV 1163 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 54/331 (16%), Positives = 103/331 (31%), Gaps = 56/331 (16%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFI--EQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 I+ + P + + + ++S+ F+ E +S + Sbjct: 36 IKDKWKILPCYMGMRGIARQHINSYNNFVLREIKEIVNAPSNKMLKS-----DACKKFYI 90 Query: 69 QYVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 +++ +GEP Q C++R +TYSAP+ V + E + Sbjct: 91 EFIDINVGEPTMSENNNKPILLTPQLCRMRDITYSAPMYVDVEYYNGE---------GVA 141 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERV--------IVSQLHRSP----GVFFDSDKGKTHS 166 + V +G +P+M + ++G R + S+L P G F K Sbjct: 142 SKRVEIGRLPVMLRSCVCALSGGMRANGNVDNFELSSRLGECPYDPGGYFIIKGVEKVIL 201 Query: 167 SGKVLYNARII-----------------PYRGSWLDFEFDPKDNLFVRIDRRRKLPATII 209 + L R+I S + + +P II Sbjct: 202 MQEQLSKCRVIVETDVKKNICATVTSATAESKSRTAVVYKNQKLYVRHNSFTDDVPLCII 261 Query: 210 LRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 L+A+ T E+I L E L E L E + ++A V + R Sbjct: 262 LKAMGVTTDEEIAQLIGTAGAREYLPTGGDYILSIEDLYNEGINTRMDALLYVGRKVRPR 321 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 A+ K+ + + ++ + Sbjct: 322 PLAKGFFTSSKERLPKTNQNLIEDTHDILTR 352 >UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 Tax=Intramacronucleata RepID=RPA2_EUPOC Length = 1166 Score = 309 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 97/516 (18%), Positives = 174/516 (33%), Gaps = 111/516 (21%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA----SDVKDSSLR-VPNGVSGTVI----------DVQ 932 TP Q + K+ R +F + D + P+G + V D Sbjct: 699 TPYHNHQFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTGYDLEDAM 758 Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + + E+ + + + S+ + +++ + + + KL+ + Sbjct: 759 IINKSSYERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENI 818 Query: 993 PRDRWLELG--LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 D ++G LT + + + ++ +L + + G+D + Sbjct: 819 DPDGLPKIGSQLTKGKPELCIFDTLKRGAKLSKFKDSEKARIETVRVCGNDDKNPDNLSI 878 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 + R GDK + RHG KGV+S + P DMP+ ENG D+++NP PSRM +G Sbjct: 879 GYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTENGITPDLIINPHAFPSRMTMG 938 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 ++++ + G+ Q+ + Sbjct: 939 MLIQSMAAKSGSLRGEFKTVETFQRYD--------------------------------- 965 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 D + L G +Y G G + + +G + Sbjct: 966 -----------------DNDIVGHFGKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVV 1008 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y +L H+V DK AR TG ++T QP+ G+ + GG RFGEME +L A+GAAY L + Sbjct: 1009 YYQRLRHMVSDKSQARGTGPIDILTHQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDR 1068 Query: 1291 LTVKSDDVNGRTK--------------------------------------------MYK 1306 L SD G + K Sbjct: 1069 LFRSSDYSEGFVCQNCGSILSCYVNRAIMKTQTFIPPSLDESNKDTEDKEIHMNEKVICK 1128 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ + +P L E+ S+GI ++ Sbjct: 1129 VCKKNSNCKKVALPFVLRFLANELASMGIKLKFTVN 1164 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 112/776 (14%), Positives = 251/776 (32%), Gaps = 99/776 (12%) Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYT--TEQILDLFFEKVIFEIRDNKLQMELV 242 + ++D L+ R+RK+ TI L A + ++++D F K+ + + + Sbjct: 77 EIDYDS-HILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNL 135 Query: 243 PERLRGETA-----------SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 + E A F + N KV I ++ + +Y Sbjct: 136 KGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTDY 195 Query: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 +D T L ++ +SL L+ + + I L I E + Sbjct: 196 GVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYERI 255 Query: 352 RVDPTN-----DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 N DR+ A++ + + + + +A + + + S + Sbjct: 256 VKGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSETSDIDAGDLF 315 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA-----E 461 S S D +I ++ KL + E+D++D + + + G + E Sbjct: 316 LSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQILSE 375 Query: 462 NQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA-------KPISAAVKEFFGSSQL--- 511 F + + + + L + D + +D++ I ++ F + L Sbjct: 376 KLFDCLHINLRARLNKELKRHNFDPMKFRDVLTNQKINCGIGLIGKRMENFLATGNLISR 435 Query: 512 -----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 D+ N + ++H R ++ G E+ VR + P +G +CP Sbjct: 436 TNLDLMQTSGFCIIGDKLNNIRFLSHFR---SIHRGQYFAEQKTTSVRKLLPESWGFICP 492 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAI-----EEGNYV 615 + TP+G GL+N +S+ + K + + ++ +S+ G Y Sbjct: 493 VHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRNILGELGMNSISSDLCLNYHTGYYP 552 Query: 616 IAQANSNL-----DEEGHFVEDLVTCR-----------SKGESSLFS-RDQVDYMDVSTQ 658 + +L D FVE L + E + + Sbjct: 553 VIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAFIPFSGYSRNLQWPGI 612 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 + S A +++ N + +++ + D+ + + + + ++ Sbjct: 613 FLASTPARFTRPVKNLHYNCIEWISPLEQMNLSIACTDEDITPETTHQELDP---INILS 669 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC---INQMPCVSLGE 775 V + + ++ + + +M G + R++ P V Sbjct: 670 IVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYH--NHQFRTDNKIYRLLFPHRPIVKTRT 727 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 V D+ E G N VA + + GY+ ED++++++ + + + Sbjct: 728 QV----------DFDIEEYPSGTNAVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKS 777 Query: 836 LACVSRDTKLGPEEITADI-----------PNVGEAALSKLDESGIVYIGAEVTGG 880 ++ + + L +D G+ IG+++T G Sbjct: 778 YTHDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENIDPDGLPKIGSQLTKG 833 >UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi RepID=Q2TAM4_HUMAN Length = 952 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 106/491 (21%), Positives = 169/491 (34%), Gaps = 91/491 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA------SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 P Q + KL R + D D P G + V V + G + Sbjct: 515 FPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMD-NYPIGTNAIVA---VISYTGYDM 570 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---LDKLPRDRWL 998 + + + + + + ++ + + G++ L KL D Sbjct: 571 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLP 630 Query: 999 ELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +G + L E + K+ +D G K V + + V Sbjct: 631 FIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRV 690 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R GDK A RHG KG++S++ P EDMP+ E+G DI+ NP G P Sbjct: 691 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFP------------ 738 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + IG I +M + A D + F E Sbjct: 739 ---SRMTIGMLIESMAGKSA----------------ALHGLCHDATPFIFSE-------- 771 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + + E+LK G RLY G +G + E + +G +Y +L Sbjct: 772 -----------ENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLR 820 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK R+TG+ VT QP+GG+ GG RFGEME AL A+G ++ L + L SD Sbjct: 821 HMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 880 Query: 1297 ----DVNGRTKM----------------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 V + + +P F + E+ Sbjct: 881 RSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAEL 940 Query: 1331 RSLGINIELED 1341 ++ I ++L+ Sbjct: 941 AAMNIKVKLDV 951 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 56/364 (15%), Positives = 116/364 (31%), Gaps = 43/364 (11%) Query: 638 SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK 697 E + +V + ++ + S+ L F R + + ++ + Sbjct: 400 VLREKRIPPWMEVVLIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQI 457 Query: 698 PLVGTGMERAVAVDS-------GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 + E V + ++ + + D ++ + + +M G + Sbjct: 458 FMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL 517 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 LT RS+ Q P L P + D D +G N VA + + GY Sbjct: 518 --LTYQDRSDNKLYRLQTPQSPLVRPS-----MYDYYDMDN--YPIGTNAIVAVISYTGY 568 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVS-RDTKLGPEEITADIPNVGEAALSKLDESG 869 + ED+++V++ + + K G + I L KLD+ G Sbjct: 569 DMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDG 628 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 + +IGA++ GD P L GE + + + V Sbjct: 629 LPFIGAKLQYGD---------------PYYSYLNLNTGESFV------MYYKSKENCVVD 667 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 +++V + D + + I + + + G+ SR+ A + + Sbjct: 668 NIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLW---PAEDMPFTES 724 Query: 990 DKLP 993 +P Sbjct: 725 GMVP 728 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 32/279 (11%), Positives = 69/279 (24%), Gaps = 32/279 (11%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + N L E + + + +R + Sbjct: 137 VPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRP 196 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL-- 321 + R V + V E+ A + + + L L Sbjct: 197 KWKTRGPGYTQY-----GVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGF 251 Query: 322 -LAKLSQSGHKRIETLFTNDLDHGPYISETLR-------VDPTNDRLSALVEIYRMMRPG 373 L L +I + ++ ++ + + L + R Sbjct: 252 ALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGECFR-- 309 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 D Y FN+ + S + + +KL Sbjct: 310 -------------VKLNVPDWYPNEQAAEFLFNQCICIH--LKSNTEKFYMLCLMTRKLF 354 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 + G D+ D L N+ + + G++ + L +E Sbjct: 355 ALAKGGCMEDNPDSLVNQEVLTPGQLFLMFLKGSLPLME 393 Score = 60.2 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 45/250 (18%), Positives = 81/250 (32%), Gaps = 61/250 (24%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVF- 80 + L ++SF GL A +++ P + + + + + + P Sbjct: 35 LQELTRAHVESFNY------AVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVP 88 Query: 81 ----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 EC+ R TY L + A G K I +Q ++G +P+M Sbjct: 89 KGTICKEANVYPAECRGRRSTYRGKLTADI------NWAVNGISKGIIKQ--FLGYVPIM 140 Query: 131 TDN------------------------GTFVINGTERVIVSQL--HRSPGVFFDSDKGKT 164 + G F+ING E+VI + R+ + K KT Sbjct: 141 VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKT 200 Query: 165 HSSGKVLYNARIIPYR----GSWLDFEFDPKDNL---FVRIDRRRKLPATIILRAL-NYT 216 G Y + R ++ + + F+ LP L+AL +++ Sbjct: 201 RGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFS 260 Query: 217 TEQILDLFFE 226 QI + Sbjct: 261 DYQIFQELIK 270 >UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenophorea RepID=Q236N3_TETTH Length = 1141 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 126/822 (15%), Positives = 257/822 (31%), Gaps = 93/822 (11%) Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 F I+ KV++ + + R + +K+ + V + K + I + Sbjct: 152 RGYFIIKGVEKVFLIQEQLADNRIFIEEDKNKELVANVKSNTVDTKSITSLIIKNHKIYV 211 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLF------TNDLDHGPYISETLRVDPTNDRLSAL 363 ++ + + LL G + + +F + L+ E + + AL Sbjct: 212 KVSSFSKP-IPLLIFFKAYGVESEQEIFQLIGTEEHLLNRLALCLEDIEQSQVYTQQQAL 270 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 + + +RP + E R ++ V Sbjct: 271 EYLSKRLRPKTFQD----KKYSSRNPVDEARDIITNVVLCHIPCKNYNYYP------RAI 320 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + + ++LI+ + ++D D+ GN+R++ G E F + V++ LS Sbjct: 321 FLGLMARRLIEALDDPSKIDKRDYYGNKRMKCAGWYLELLFEDKFKQFNMMVRKELSKEI 380 Query: 484 LDTLMPQDMI----------NAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEITHKRRI 530 I N I+ + + +F MD + I Sbjct: 381 EKHKNKSYPIKNRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDTVGVTQVLARISYI 440 Query: 531 SALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 +A+G + R R + +H+G VCP +TP+G + GL +LS+ A Sbjct: 441 AAIGMMTRMNSQFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLSLMAHITIEE 500 Query: 586 FLETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLDEEGH----FVEDLVTCRSK 639 + + ++I + S+ E E + N + F + L R + Sbjct: 501 KKNV-LSTIALNLGMEDIGHYSSGEIHEDKNYMVFLNGQIIGMHRDPEAFAQKLRFMRRR 559 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR------------ 687 G+ + + + + L L + + L+ + Sbjct: 560 GKIGTTISISTNSEKRAV-YLDTDDGRLCRLLIVVENGKPLITNDHLNDLKEKRKSYLDL 618 Query: 688 ------QAVPTLRADKPLVGTGMERAVAVDSGV-------TAVAKRGGVVQYVDASRIVI 734 + + D + E T + G+V Y ++ Sbjct: 619 IRMGLIEYIDVNEEDNCYIAIKQEDIPNRSKTTHMEIDPLTLLGVVSGLVPYPHHNQASR 678 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + M G+ + I T R + P P+ + V+ + Sbjct: 679 NTFQCAM--GKQALGIIGSTSMNRVDTILYQLIYPQ----TPLLKTKVI---EYAGYDKF 729 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL-GPEEITAD 853 G N +A + ++GY+ ED+ ++++ + T+ ++ + K+ G E+ Sbjct: 730 PAGHNASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMVFKKYETEIQKLKMSGLTELLRG 789 Query: 854 IPNVGEAALSK-----------LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 P E + K LD+ G +GA + GD+L K TP LT E++ Sbjct: 790 PPKEAEGSYKKKQNRVLKKFGALDDDGTPIVGASINNGDVLFNKYTPL----LTLEQQRG 845 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE 962 R I + + G ID + ++ + + E + + K S Sbjct: 846 RDILNNNSVSEYIHNPTTFKGKKLARIDRVIRSQQDGNVIIKTIVRETRRPEYGDKFSSR 905 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 Q GL + + L P + + Sbjct: 906 HGQKGIIGLIVNQEDMPFSEKGWVPDLIMNPHGYPSRMTVGK 947 Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 89/425 (20%), Positives = 149/425 (35%), Gaps = 73/425 (17%) Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA------VLVAGG 983 VF + E K + L+ K+ + + + + A +V Sbjct: 764 RTMVFKKYETEIQKLKMSGLTELLRGPPKEAEGSYKKKQNRVLKKFGALDDDGTPIVGAS 823 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + L L ++E KKL R I D Sbjct: 824 INNGDVLFNKYTPLLTLEQQRGRDILNNNSVSEYIHNPTTFKGKKLARIDRVIRSQQD-- 881 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 I+K + RR + GDK + RHG KG+I I EDMP+ E G Sbjct: 882 --GNVIIKTIVRETRRPEYGDKFSSRHGQKGIIGLIVNQEDMPFSEKGWVP--------- 930 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 I+ H + +G + Sbjct: 931 ------DLIMNPHGYPSRMTVGKLL----------------------------------- 949 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 E++ + G F G K A++ +L +G+ + G TGE + Sbjct: 950 ----ELLGSKAAVLSGQFKYGTAFGGDKMADLSSILVQNGFSYTGKDVIISGITGEYMQC 1005 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V G ++ +L H+V DK+HAR+ G + +T+QP G+A+ GG R GEME +L A+ + Sbjct: 1006 YVFCGPVFYQRLKHMVADKVHARAKGRVTTLTRQPTEGRAKDGGLRLGEMERDSLLAFAS 1065 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKN---------IVDGNHQMEPGMPESFNVLLKEIRSLG 1334 + L E L + SD + + + + + MP + +L +E+ S+ Sbjct: 1066 SNLLIERLMISSDKFSVQVCEKCGFIQHTNSCKMCQTDQVSKVVMPYACKLLFQELLSMN 1125 Query: 1335 INIEL 1339 I +L Sbjct: 1126 IKPKL 1130 >UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2EN74_TRIVA Length = 1104 Score = 307 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 98/478 (20%), Positives = 171/478 (35%), Gaps = 74/478 (15%) Query: 889 PKGETQLTPEEKLLRAIFGEKA--SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL 946 P + E K + ++ ++ S + + + GT V V + G + + L Sbjct: 663 PSHREAASTEVKTYHVHYPQRPIVRTMEQDSHALEDFLLGTNACVAVLSYTGYDMEDALL 722 Query: 947 EIEEMQLKQAKKD-LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + + + + + + S GV + ++ ++ Sbjct: 723 INKCSVERGFGHGCIYKTHRYTAEEIESNSYFCNTKDGVIVDPDLDADGLPFVGQRVSKG 782 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 K ++ E + + + + + IT D VL +V + + R GDK Sbjct: 783 CKLLRVYNPKENKERIMSYKDGEDGFVDKVITTTSDDGKRVLSVV-LKFRMVRTPTIGDK 841 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 + RHG KGV S P E+MP+ ENG D+++NP PSRM IG ++E+ G Sbjct: 842 FSSRHGQKGVFSFPWPQENMPFCENGITPDVIINPHAFPSRMTIGMLIESMCGKLRA--- 898 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 + D + F+ +E R+ Sbjct: 899 ---------------------------SQDCAFFDATPFTHDEKNRIT------------ 919 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 E+ ++L G +Y G TGEQF+ + +G +Y +L H+V DK Sbjct: 920 -------DEVGQMLAKEGFEYYGNEAMYSGITGEQFKADIFMGVVYYQRLRHMVGDKYQV 972 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGR 1301 R+TG + +T+QPL G+ + GG R GEME L A G + L++ SD + R Sbjct: 973 RATGKMNNITRQPLKGRKKGGGIRLGEMERDGLLAQGVTFLLRDRFMWCSDGHVAKLCNR 1032 Query: 1302 TK-----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +P L E ++ I ++ E Sbjct: 1033 CGSFMFTQTKHDENGVEETYCTYCKKSGNCTSVYVPYVLRYLCAEFAAMNIRMKFSTE 1090 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 103/659 (15%), Positives = 204/659 (30%), Gaps = 87/659 (13%) Query: 374 EPPTREAAESLFENLFFS----EDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 + TR A F + + + R+L + + D +I + Sbjct: 268 DIHTRAGARDFLGAHFRTVLQCPRHFTNEECCEVLLKRNLFPHLSDEAPSKKFDLLIYMT 327 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV------KERLSLGD 483 ++L+ + G+ D++D + + G + + +A E+ ++ D Sbjct: 328 RRLLQLVKGEILPDNMDANSAHELLTPGTLWLPALSDAITDFLKATAANVYKDEKNAIDD 387 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSS--------------QLSQFMDQNNPLSEITHKRR 529 D L NA + ++ F + LS ++ N + H R Sbjct: 388 FDALQTILKKNASGVENRMRYLFSTGSLRGNSTLGLSQTEGLSIIAERINYCRYLAHFR- 446 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT---NEYGF 586 ++ G VR + P +G +CP+ TP+G GL+ L+ + + + GF Sbjct: 447 --SVHRGAFFTTMKTTAVRYLLPESWGFMCPVHTPDGGLCGLLTHLARFCEIVTGDSQGF 504 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF----VEDLVTCRSKGES 642 E G+V + VI VE L T R KG Sbjct: 505 KEIVQIFTNYGMVP-----FLGSGDMVPVIVDGRVVGSIRERLSSAAVEALKTARRKGII 559 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLV 700 + +++ S S+ FL R + Q Q P + + Sbjct: 560 PKMA-------EIADLPAGSFTRSIYVFLNQQRMMRPVFNVKAQEQEYAGPLEQIFMDIA 612 Query: 701 GTGMERAVAVDSGV--TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 + + A ++ + + D ++ + + +M G + + Sbjct: 613 SNPKDESKAYREIHHTAMLSLIASLTPFSDYNQSPRNMYQCQMAKQTMGYPSHR--EAAS 670 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 + T P + +E+ D + + + LG N VA + + GY+ ED++L+ Sbjct: 671 TEVKTYHVHYPQRPIVRTMEQ-----DSHALE--DFLLGTNACVAVLSYTGYDMEDALLI 723 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 ++ V+ + + + + G LD G+ ++G V+ Sbjct: 724 NKCSVERGFGHGCIYKTHRYTAEEIESNSY---FCNTKDGVIVDPDLDADGLPFVGQRVS 780 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 G KLLR ++ K+ + +G G V V T D Sbjct: 781 KG------------------CKLLRVYNPKEN---KERIMSYKDGEDGFVDKVITTTSDD 819 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 KR L + + ++ G + + P Sbjct: 820 G---KRVLSVVLKFRMVRTPTIGDKFS-SRHGQKGVFSFPWPQENMPFCENGITPDVII 874 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 63/404 (15%), Positives = 116/404 (28%), Gaps = 68/404 (16%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAA---FRSVFPIQSYSGNS-ELQYVSYRLGEP 78 D+ + LS L+SF GL+ F + L +P Sbjct: 13 DLCHFLSPHLESFNW------AVNTGLQKIPEWIPEQFVKRDGDDRILHFHVKELTLTKP 66 Query: 79 ------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 C++ G TY L + L I + + + V IP+M + Sbjct: 67 YDARGNKIYPYMCRLGGQTYGGSLNIILEAAINDLPPKKFS--------VVANNIPVMVN 118 Query: 133 N------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 + G F+ +G E+++ + F ++ HS G Sbjct: 119 SDLCHLKGLTPQEKGALMEEPTEAGGYFIYSGYEKLLRLLILNRQNYVFALNRPSFHSRG 178 Query: 169 KVLYNARIIPYRG---------SWLDFEFDPKDNLFVRIDRR-RKLPATIILRALN-YTT 217 + +R + + ++ + + I RR +P I+LRAL Sbjct: 179 PT-FTNFATSFRSMAPDCSSITTNVHYQNTGNMVVLIPIQRRMFFVPLPILLRALVEVDD 237 Query: 218 EQILDLFFEKVIFEIRDNKLQMEL-VPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 I + + +++ L L T + + G + + + Sbjct: 238 RTIYESICGQNPDSFYSDRVIATLRYASELDIHTRAGARDFLGAHFRTVLQCPRHFTNEE 297 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAK-----LSQSGHK 331 + +K P D + T L+ E+ D + L G Sbjct: 298 CCEVLLKRNLFPHLSDEAPSKKFDLLIYMTRRLLQLVKGEILPDNMDANSAHELLTPGTL 357 Query: 332 RIETLFTNDLDHGPYISETLRVDPTN--DRLSALVEIYRMMRPG 373 + L D + + D N D AL I + G Sbjct: 358 WLPALSDAITDFLKATAANVYKDEKNAIDDFDALQTILKKNASG 401 >UniRef50_B9G6G0 DNA-directed RNA polymerase n=5 Tax=Oryza sativa RepID=B9G6G0_ORYSJ Length = 1150 Score = 307 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 98/459 (21%), Positives = 152/459 (33%), Gaps = 90/459 (19%) Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 P+G + V + +T +E + + E L A + Sbjct: 726 PSGTNAIVAVLS-YTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLSAKSRDNVTEFFC 784 Query: 981 AGGVEAEKLDKLPRDRWLEL---GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 + + + D + +E+ + L +K + A + Sbjct: 785 KSNLSRDTTAAIESDGLPRIGENIFPNEQYYSVCNNLTGTVRPIK--LKGSEPAAIDYVA 842 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN-GTPVDI 1096 L+ + L R GDK + RHG KGV S++ P DMP+ N G D+ Sbjct: 843 VNGTNFKDRLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDL 902 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP PSRM I +LE+ A G I Sbjct: 903 IINPHAFPSRMTIAMLLESIAAKAGSLKGKFI---------------------------- 934 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 D + F+ R + E+ +L G LY G Sbjct: 935 ---DATPFASSVKER----------------SNSIVDELGPMLASYGFNYHGTEILYSGV 975 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 G + + + +G +Y +L H+V DK R+TG +T+QP+GG+ GG RFGEME Sbjct: 976 FGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQPIGGRKYGGGIRFGEMERD 1035 Query: 1277 ALEAYGAAYTLQEMLTVKSD----DVNGRTKM---------------------------- 1304 AL A+GA+Y L + L SD DV Sbjct: 1036 ALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVIKSESQKKAKRDMLGLPTVKPP 1095 Query: 1305 ----YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + MP F L E+ ++ I +EL Sbjct: 1096 KNFACQACKTSKGMETVAMPYVFRYLASELAAMNIKLEL 1134 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 87/655 (13%), Positives = 191/655 (29%), Gaps = 117/655 (17%) Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 + I + +R R L+ + + F ++ ++ D V Sbjct: 231 ERAQIILDEVRDLSLFTRTECLLHLGK---------------YFRSVMEGFEKDDFETVA 275 Query: 402 RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM-- 459 + + + +I +++KL I + D D L + + G + Sbjct: 276 EAVLKDYIFVH--LQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLIT 333 Query: 460 --AENQFRVGLVRVERAVKERLSLG-DLDTLMPQDMI----------------------- 493 +++ + L + +R + E + D +D I Sbjct: 334 VFLKDRLQDWLRKSKRLIVEEATKNKSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWLM 393 Query: 494 -------------NAKPISAAVKEFFGSSQL-SQ-------------FMDQNNPLSEITH 526 + + A++ ++ SQ ++ N I+H Sbjct: 394 RIGAQEVRKFLSKTSAYVGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISH 453 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 R ++ G + VR + P +G +CP+ TP+G GL+N ++ + + + Sbjct: 454 FR---SVHRGSSFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYN 510 Query: 587 LET---PYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNLDEEGHFVEDLVTCRSKGE 641 E ++K+ ++ + A ++ +G V + + + + Sbjct: 511 SEGATKDFQKIKMSLIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEEV 570 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA---LMGANMQRQAVPTLRADK- 697 + L F R L+G + + + + Sbjct: 571 IPEDL-----EVGYVPLSHGGAYPGLYLFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQ 625 Query: 698 -------PLVGTGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 P G G + + ++ + + D ++ + + +M Sbjct: 626 AFMEIRCPDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQT 685 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 G L K+ R++ Q P + D E G N VA + Sbjct: 686 MGFCGQAL-KF-RTDVKAFHLQTPQTPIVRTATYSKYCMD-------EFPSGTNAIVAVL 736 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 + GY+ ED++++++ V F Q N+ + + Sbjct: 737 SYTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLSAKSRDNVTEFFCKSNLSRDTTAAI 796 Query: 866 DESGIVYIGAEVTGG-------DILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 + G+ IG + + L G V P P A+ G D Sbjct: 797 ESDGLPRIGENIFPNEQYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDR 851 >UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q27493_CAEEL Length = 1127 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 100/523 (19%), Positives = 166/523 (31%), Gaps = 118/523 (22%) Query: 885 GKVTPKGETQLTPEE----KLLRAIFGEKASD---VKDSSLRVPNGVSGTVIDVQVFTRD 937 G + P + +P ++ + G D+ + ++ ++ + + Sbjct: 650 GNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKY 709 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 +++ + D+ + + I +A V + + R Sbjct: 710 EMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTI 769 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD----------------- 1040 +E K + L + F ++ + GD Sbjct: 770 FYRNPREEIKTVGPDGLPIPG---RRYFLDEVYYVTFNMETGDFRTHKFHYAEPAYCGLV 826 Query: 1041 -----DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 K + ++R GDK A RHG KG+ S + P+E +P+ E G D Sbjct: 827 RIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPD 886 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I+ NP G PSRM IG ++E+ G AA G+ Sbjct: 887 IIFNPHGFPSRMTIGMMIESMAGKAAATHGE----------------------------- 917 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 D S F E D ELL G Y G Sbjct: 918 --NYDASPFVFNE-------------------DNTAINHFGELLTKAGYNYYGNETFYSG 956 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 G Q E + G +Y +L H++ DK R+TG +T QP+ G+ + GG RFGEME Sbjct: 957 VDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMER 1016 Query: 1276 WALEAYGAAYTLQEMLTVKSD----DVNGRTKM--------------------------- 1304 A+ A+G ++ LQ+ L SD R Sbjct: 1017 DAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDY 1076 Query: 1305 -----YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P F L E+ ++ + I+L E Sbjct: 1077 TETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIE 1119 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 101/725 (13%), Positives = 226/725 (31%), Gaps = 93/725 (12%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM---ELVPERLRGETASFDIEANG 259 K+P + + +L + + E V L +F I Sbjct: 106 KVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIR 165 Query: 260 KVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 K + EKG+ + +R ++++ ++ Y+D T +L E+ Sbjct: 166 KTFKEKGKLFSEFGVMMRSVKENHTAVMM-----------TLHYLDTGTMQLALQFRREI 214 Query: 318 SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 L + ++ + + + + G + S ++ + + E Sbjct: 215 FYVPLMYIVKALTDKNDAVISAGFKRGR--------NQDQFYSSCILNMLAQCQEEEILN 266 Query: 378 REAAESLFENLFFSE------DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 +EAA + F D GR +L + + +K Sbjct: 267 QEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEE--KFHTLAYMTQK 324 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMP 489 LI + G+ + D+ + G + R + + V+ +L D ++ Sbjct: 325 LIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFILT 384 Query: 490 QDMI-------NAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKR 528 I I+ + F + L S ++ N L ++H R Sbjct: 385 SAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFR 444 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 A+ G E +VR + P +G +CP+ TP+G GL+N ++ + Sbjct: 445 ---AIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDN 501 Query: 589 TPYRKVT--DGVVTDEIHYLSAIEEGNYVIAQAN-----SNLDEEGHFVEDLVTCRSKGE 641 + + G+ T + L+ E Y + + + L + + Sbjct: 502 SNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKD 561 Query: 642 SSLFSRDQVDYM-----------DVSTQQVVSVGASLIPFLEHDDANRA-LMGANMQRQA 689 + + ++ + ++S LI + + + +G Q Sbjct: 562 ARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYL 621 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 L ++ G M + + + G ++ + D ++ V + +M G Sbjct: 622 SVVLDPEEAEPGVTMHQELHP---SCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTA 678 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 ++ ++R++ Q P + + L ++ E LG N VA + + G Sbjct: 679 VHA--WHSRADNKMYRLQFPQQPMLK-------LEAYEKYEMDEYPLGTNACVAVISYTG 729 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 Y+ ED++ +++ Q I+ + + + + G Sbjct: 730 YDMEDAMTINKASYQRGFAHGTVIKVERINLVTERERKTIFYRN----PREEIKTVGPDG 785 Query: 870 IVYIG 874 + G Sbjct: 786 LPIPG 790 Score = 62.9 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 60/387 (15%), Positives = 127/387 (32%), Gaps = 67/387 (17%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD---- 81 + S +DSF + + + +A F +++ +++ S +L +P D Sbjct: 4 DIASYHVDSFDFLVSKGCQFAA--QAVPAEKFRLKNGD-AVTMKFTSAQLHKPTLDTGAK 60 Query: 82 ---------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 EC+ RG+TY+ L+V + + + E+ +G++P+M Sbjct: 61 LTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDII--------EIILGKVPIMLR 112 Query: 133 N------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 + G F++NG+E+VI + F + KT Sbjct: 113 SEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRN-FPIAIIRKTFKEK 171 Query: 169 KVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRKL---PATIILRALNYTTE 218 L++ + R + + + + + RR++ P I++AL + Sbjct: 172 GKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKND 231 Query: 219 QILDLFFEKVIFEI------RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR 272 ++ F++ + N L E L E A I + +V V Sbjct: 232 AVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWED 291 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC--AANMELSLDLLAKLSQSGH 330 + + + + ++ K Y+ + L+ A + S SGH Sbjct: 292 DLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGH 351 Query: 331 KRIETLFTNDLDHGPYISETLRVDPTN 357 + L + + L + Sbjct: 352 ILLLILRERMENIIGMVRRKLEYMSSR 378 >UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4N2L4_THEPA Length = 1235 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 99/439 (22%), Positives = 160/439 (36%), Gaps = 75/439 (17%) Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 + + +V + + KD ++ L+ R+ L Sbjct: 839 NSFIYKSKVIDLNSQASSTKERGGTVEYFNNMDKDSKLIVKKLDFDGLPRLGEKLTKNS- 897 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 + + K N + +Y E ++ + +IT GD ++ Sbjct: 898 -------------PFYRIEERGKNNIVNDKVVKYTEEPAIVDQITLVGKSEITVGDKISC 944 Query: 1045 GVLKIVK--VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 LK + + L V R GDK A RHG KG++S + P EDMP+ ENG D++ NP G Sbjct: 945 PGLKHDRAIIKLRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLENGIVPDVIFNPHG 1004 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 +PSRM IG+++E G A G ++ Q + + G + ++VD+ Sbjct: 1005 LPSRMTIGKLIEGMAGKVASIYGKPQDSTCFQ--------AYYSENPENGDEEMEEVDV- 1055 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + L G +Y G G + + Sbjct: 1056 -----------------------------VDYFGKSLIKSGYEYYGTESMYCGTLGTEIQ 1086 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + VG +Y +L H+V DK RSTG +T+QP+ G+ GG RFGEME AL A+G Sbjct: 1087 THIFVGLIYYQRLRHMVSDKAQVRSTGPVDTITKQPVKGRKNLGGIRFGEMERDALIAHG 1146 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGN---------------------HQMEPGMPE 1321 A LQ+ L SD + + +P Sbjct: 1147 TANLLQDRLLHCSDAHMAYVCPKCGSILSPSISSLEANTKRQVSICTICQVNCKLVTIPY 1206 Query: 1322 SFNVLLKEIRSLGINIELE 1340 + E+ ++ I I+L Sbjct: 1207 VLRYVANELATMNIGIKLH 1225 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 140/1104 (12%), Positives = 322/1104 (29%), Gaps = 167/1104 (15%) Query: 29 SIQLDSFQKFIEQ-------DPEGQYGLEAA--FRSVFPIQSYSGNSELQYVSYRLGEP- 78 ++SF FI+ + Y A +S + ++ +S ++G P Sbjct: 13 ESHVESFNTFIDHYSFNMVNNIPPVYITYNADSLKSFLNPKDTPYYVKVSIISLKIGYPT 72 Query: 79 -----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + +I TY APL V + +E E+ I +EV +G I Sbjct: 73 RPGSECIGTSQKMYPRHAKISHTTYEAPLVVTFGIKFFESES-------IITKEVPVGHI 125 Query: 128 PLMTDNGTFV---INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 P+M + ++G E + + PG +F + + I+P + Sbjct: 126 PIMVRSNRCNLKGLSGEEMIKQGEDADEPGGYF------IIKGNEKMLRQLIVPRSNYPI 179 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 F+ D ++ + T + ++ + I + +V Sbjct: 180 AFKSDSNS--------QKNVLFTEYSIFMRCQSDLDGTCVSNYLHLTINKRCMFRVIVRN 231 Query: 245 RLRGETASFDIEANGKVYVEKG-RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + + A E +R + ++ V + ++ + V D Sbjct: 232 SIVLVPLFLLLRALLPFLSEDEFKRKLLENCSNNQEMTVLYHRIFLDMVQCDPVLSDIDF 291 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 L + L Y + + L Sbjct: 292 IQNRYLY-RLGKACWNQVSQYLHPGSTFE-----ECAHHLIKYFVIIHAKSNLDKFRTLL 345 Query: 364 VEIYRM--MRPGEPPTREAAESLFENLFFSEDRY--DLSAVGRMKFNRSLLREEIEGSGI 419 ++ + G + F+ L Y L + R +E + Sbjct: 346 FMFNKLVNLSNGNIQSESYDSFAFQELLLPGQSYSCILKESLYLSLTRIRTVYNLEINNF 405 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+ + + G G+++++D ++ E R + V Sbjct: 406 LNH---LKGKRGFKRNYAGVGKLENLDQ----------DLEEEMVRKFMNSVNLFNFAIN 452 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 + T ++ E ++ + +D+ N +H R ++ G + Sbjct: 453 KVAPEITKKVHHFLSTGNAFNTHYELNQNTGFALVLDRINYHRFSSHLR---SVHRGNIF 509 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE------YGFLETPYRK 593 + +VR + +G +CP+ TP+G GL+ LS YA+ Y + K Sbjct: 510 MKMRSTQVRKLLGETWGFICPVHTPDGAPCGLLLHLSQYAKPVTTPNKPSYLNSIKSFLK 569 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQA----NSNLDEEGHFVEDLVTCRSKGESSLFSRDQ 649 ++ + ++ + ++ NL++ F + L T ++ + + + Sbjct: 570 SQPLHISGSTNKVNGGNDRIPLVVDGIPISYVNLEDVEEFYDKLKTSKNLEKFGMCRHFE 629 Query: 650 VDYMD-----VSTQQVVSVGASLIPFLEH-DDANRALMGANMQRQAVPTLRAD------- 696 + S+ +++ L+ + + D L+G Q + + Sbjct: 630 TCAIRDKFGVFSSIYIMTFPGRLVRPVRNIKDNQIELIGPITQLWSTIAINEYELNKSHN 689 Query: 697 ------------------KPLVGTG---------MERAVAVDSGVTAVAKRGGVVQYVDA 729 KPL + V +D ++ + + + Sbjct: 690 KLLDLQANPSAMNKVQVPKPLKSLKDNELDNCPVLYEYVELD-MCCILSLSASLTPFSNH 748 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI---NQMPCVSLGEPVERGDVLADG 786 ++ + + +M GI + +++ RS T + Q P V+ E + G Sbjct: 749 NQSPRNMYQCQMLKQSVGIPFH--SQFYRSEVKTYVLTSLQRPLVATKEYEKMG------ 800 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR----- 841 + G N VA + +G++ ED++++++ V F + + Sbjct: 801 ----FQDYPTGVNCVVAIIAHSGFDMEDAMILNKASVDRGLFNSFIYKSKVIDLNSQASS 856 Query: 842 -DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + G E ++ + + KLD G+ +G ++T K EE+ Sbjct: 857 TKERGGTVEYFNNMDKDSKLIVKKLDFDGLPRLGEKLT-----------KNSPFYRIEER 905 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 I +K V + + + + + + + + Sbjct: 906 GKNNIVNDKVVKY--------TEEPAIVDQITLVGKSEITVGDK----ISCPGLKHDRAI 953 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 + + + + + G+ + + D + Sbjct: 954 IKLRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLENGIVPDVIFNPHGLPSRMTIGK 1013 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAP 1044 L K+ + K Sbjct: 1014 LIEGMAGKVASIYGKPQDSTCFQA 1037 >UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomatidae RepID=Q583H5_9TRYP Length = 1190 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 150/857 (17%), Positives = 277/857 (32%), Gaps = 91/857 (10%) Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 R + P L+ + I+ + ++ ++ + E + F + K Sbjct: 157 REEQPYRTFLQNMELGRIPIM--LKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEK 214 Query: 261 VYVEKGRRITARHIRQLEKDDV-KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 V + + R+ + I+ VE K + E L Sbjct: 215 VLIAQERQAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGH-GYENLL 273 Query: 320 DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD-PTNDRLSALVEIYRMMRPGEPPTR 378 +A++ + D+ I +T+ D L L E TR Sbjct: 274 CRVAQMDEL-IPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSMEDASTLEIFTR 332 Query: 379 EAAESLFENLFFSED-RYDLSAVGRMKFNRSLLREEIEGSGIL--SKDDIIDVMKKLIDI 435 + A +D R +L + R LL I ++ +L+ + Sbjct: 333 DEALWFIGKRLGKQDSRENLQREAQDLLMRDLLPHMGVDCAADRGKCLFIGYMVHRLLLL 392 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL---SLGDLDTLMPQDM 492 G+ E D D LG++RI G + Q LV+V R + + + S + + Sbjct: 393 ALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVVSFGRI 452 Query: 493 INAKPISAAVKEFFGSSQ------------LSQFMDQNNPLSEITHKRRISALGPGGLTR 540 ++ + I+ ++ + +SQ +++ S +++ RRI ++ Sbjct: 453 LHNRLITDGMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQN----PISA 508 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 R++H T +G +CP+ETPEG +IGL+ +L++ + + V + Sbjct: 509 SSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQAVQSRITG 568 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY---MDVST 657 LS + + N L E L+ ++V + Sbjct: 569 FHSIALSDLADVRVARVFVNGTLIGVHGDPERLLRDLRARRRGGELSNEVSIVRDIRDRE 628 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +V S G + L + +R + +A + Sbjct: 629 IRVFSDGGRCLRPLFVVEKSR-----------IKLQKAGIGELLEPSTTLGGRREISWNK 677 Query: 718 AKRGGVVQYVDASRIVIK--------------VNEDEMYPG---EAGIDIYNLTKYTRSN 760 + G V+ +D + EM P I + +S Sbjct: 678 VMKKGYVELIDCEEEDSLLIAMVPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSP 737 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPS------------------TDLGELALGQNMRV 802 +NT + M ++G ++ D + +L G N V Sbjct: 738 RNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMSYMRSNDLPAGHNAIV 797 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP-----NV 857 A ++GYN EDSI++S V+ F ++ + + G E +IP +V Sbjct: 798 AIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREGREM--FEIPDRKVCHV 855 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 A +KLD G++ G V GGDI+VGK P +T L+ E + +D S Sbjct: 856 KRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKT-LSEES-----PVSDTRILKRDCS 909 Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 + G V V + G K + ++ K S Q G+ R Sbjct: 910 ISSRAAEKGVVDRVMLTENKGNRFTKVRIRTIKI-PNIGDKFCSRHGQKGTNGIQFRQED 968 Query: 978 VLVAGGVEAEKLDKLPR 994 + + L P Sbjct: 969 MPFNHDGISPDLIINPH 985 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 90/468 (19%), Positives = 155/468 (33%), Gaps = 84/468 (17%) Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG-VSGTVIDVQVFTRDGVEKDKRA-LE 947 L + AI + +DS + + G V + E+ KR E Sbjct: 784 MRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREGRE 843 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + E+ ++ + L+ + ++ G + K +P+ EE Sbjct: 844 MFEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTL-------SEES 896 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 ++ ++ + +K R +T+ + KV + + GDK Sbjct: 897 PVSDTRILKRDCSISSRAAEKGVVDRVMLTEN-----KGNRFTKVRIRTIKIPNIGDKFC 951 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 RHG KG EDMP++ +G D+++ H + + Sbjct: 952 SRHGQKGTNGIQFRQEDMPFNHDGISPDLII---------------NPHAIPSRMTVAHL 996 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 I + + KG + F Sbjct: 997 IETLAGKVA---------------------------------------CYKGGEVYATPF 1017 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 + + L L G RLY+G TG + + G Y +L HL DK+HAR Sbjct: 1018 CSVVVEDFGKALTQLKLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARP 1077 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK---- 1303 G + +QP G+A GG RFGEME + +YGA+ L+E L SD + Sbjct: 1078 RGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNMCG 1137 Query: 1304 ------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + +H + MP + +L +E+ S+ I L Sbjct: 1138 TICAADTDQNLYKCQGCDNDSHISQVLMPYACKLLFQELMSMAILPRL 1185 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 90/271 (33%), Gaps = 55/271 (20%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAF----RSVFP---IQSYSGNSELQY 70 L+ Q+DS+ F+ + P L P ++S L Sbjct: 47 ISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESEPDQYRLSL 106 Query: 71 VSYRLGEPVFD-------------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 +G P + EC++R +TY A +V L + +Y Sbjct: 107 EDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSREE--QPYRT 164 Query: 118 KEQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSP 153 Q + +G IP+M + G F++NGTE+V+++Q ++ Sbjct: 165 FLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQERQAA 224 Query: 154 GVFFDSDKGK-THSSGKVLYNARIIPYRGSWLDFEFDP------KDNLFVRIDR-RRKLP 205 + + K K + + R + + +NL R+ + +P Sbjct: 225 NHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDELIP 284 Query: 206 ATIILRALNY-TTEQILDLFFEKVIFEIRDN 235 ++ RAL+ + ++IL + Sbjct: 285 LFVLFRALDMGSDKEILQTVVPDLKDVAMLE 315 >UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8I793_CHLRE Length = 720 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 96/499 (19%), Positives = 163/499 (32%), Gaps = 110/499 (22%) Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL-- 964 G+ D+ + + + +++ L D+ + + Sbjct: 269 GQATQHRTDTKVYRIQTPQAPICRTIRYAEYKMDEFPNGTNAIVAVLAYTGYDMEDAMIL 328 Query: 965 ------QILEAGLFSRIR---AVLVAGGVEAEKLDKLPRDRWLELGLTDE-EKQNQLEQL 1014 + L + GG + P + G E + + + Sbjct: 329 NKSAVERGLAHASLYKTECVNLKEERGGGGKQYFAATPHTQMTRDGDRIEPDGLPAVGSI 388 Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAP------------GVLKIVKVYLAVKRRIQP 1062 + + + +G+++A G+ + + L R Sbjct: 389 IWPGQVFYATRDDQSGKSKSHKLKGEEVAVVDQVGVEGRGLGGLPQQANIRLRFNRNPMI 448 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK A RHG KGV+S + P DMP+ G D+++NP PSRM IG ++E+ + Sbjct: 449 GDKFASRHGQKGVLSILWPDTDMPFCAATGIRPDLIINPHAFPSRMTIGMLVESLVSKGG 508 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G ++A Q+ + Sbjct: 509 ALAGQFVDASPFQRADG------------------------------------------- 525 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 V G L+ GQ + G TG++ + +G +Y +L H+V D Sbjct: 526 ----VEKGNATERWGAYLERQGFSRYGQETMISGVTGQEMPCDIYIGPVYYQRLRHMVSD 581 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----D 1297 K RSTG + +T+QP+ G+ GG RFGEME +L A+GAAY L + L SD D Sbjct: 582 KFQVRSTGPINAMTRQPIKGRKFGGGIRFGEMERDSLLAHGAAYLLHDRLHACSDYHVAD 641 Query: 1298 VNGRTK--------------------------------MYKNIVDGNH--QMEPGMPESF 1323 V + G+ +P F Sbjct: 642 VCVSCGSLLAPLRKPAANADVTSNLMLGGGGGEGGGKTVCPVCCPGSSATIERVALPYVF 701 Query: 1324 NVLLKEIRSLGINIELEDE 1342 L E+ ++ I +ELE + Sbjct: 702 RFLAAELAAMNIKMELEIK 720 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 57/412 (13%), Positives = 121/412 (29%), Gaps = 55/412 (13%) Query: 498 ISAAVKEFFGSSQL--------SQ------FMDQNNPLSEITHKRRISALGPGGLTRERA 543 + + + + L SQ ++ N ++H R ++ G E Sbjct: 11 VGSKFEYLLNTGNLVSRSGLDLSQATGFTVVAEKLNFFRYLSHFR---SVHRGAYFAELR 67 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 VR + P +G +CP+ TP+G GL+N + G + V + Sbjct: 68 TTTVRKLLPESWGFMCPVHTPDGAPCGLLNHFTAACSIVTQGSSNEELTSLGIMQVLTAL 127 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 A + + +G V RS ++ ++ + V Sbjct: 128 GMSPAAPALSPPPPPDYLCVQLDGRVVG---HVRSGAAAAALVPYHLEVVHV-------- 176 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 P L + + R P ++ + G V G+ Sbjct: 177 -----PPLLGGPFPGVFLFSQSARMIRPVVQVRGRGLRGGGGERGRKWGCVREWRHGEGL 231 Query: 724 VQYVDASRIVIKVNE-----------DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 + M G R++ Q P Sbjct: 232 SVLHVHPLPRRRPRRQPRPGLHARRAGAMAKQTMGTPGQATQ--HRTDTKVYRIQTPQAP 289 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 + + + D E G N VA + + GY+ ED++++++ V+ Sbjct: 290 ICRTIRYAEYKMD-------EFPNGTNAIVAVLAYTGYDMEDAMILNKSAVERGLAHASL 342 Query: 833 IQELACVSRDTK-LGPEEITADIPNVG-EAALSKLDESGIVYIGAEVTGGDI 882 + ++ + G ++ A P+ +++ G+ +G+ + G + Sbjct: 343 YKTECVNLKEERGGGGKQYFAATPHTQMTRDGDRIEPDGLPAVGSIIWPGQV 394 >UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 Tax=Eukaryota RepID=RPA2_DICDI Length = 1130 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 106/489 (21%), Positives = 170/489 (34%), Gaps = 86/489 (17%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA-----SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 TP + KL + +K + K P+G + VI V T +E Sbjct: 692 TPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNA-VIAVISNTGYDMEDA 750 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGL---FSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + E L+ GL + V E + D Sbjct: 751 MIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKFIDTDGLPF 810 Query: 1000 LGLTDEEKQNQLEQLAEQYD----ELKHEFEKKLEAKRRKI--TQGDDLAPGVLKIVKVY 1053 +G + + + + E+ R I G P + + V Sbjct: 811 VGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVK 870 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L R GDK + RHG KGV+S++ P +MP+ E+G D+++NP PSRM IG ++ Sbjct: 871 LRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSRMTIGMLV 930 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 E G A G + D + F +E Sbjct: 931 EILAGKAGAIHG-------------------------------KFQDATAFQFDE----- 954 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 + E L G ++Y G TG++FE + G Y Sbjct: 955 --------------NNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQ 1000 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 +L H+V DK R+ G + +T+QP+ G+ GG RFGEME +L A+GA++ L + L Sbjct: 1001 RLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMK 1060 Query: 1294 KSD----DVNGRTKM-----------------YKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 SD V K+ + +P F L+ E+ + Sbjct: 1061 SSDFAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAA 1120 Query: 1333 LGINIELED 1341 + I ++L+ Sbjct: 1121 VNITMKLQV 1129 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 117/773 (15%), Positives = 236/773 (30%), Gaps = 107/773 (13%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM---ELVPERLRGETASFDIEANG 259 +LP + R + L + + + E V L A+ + + Sbjct: 120 RLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHR 179 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 K + +G T K+ + + V + + D T E L Sbjct: 180 KAWTNRGPGYT--------KNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFL 231 Query: 320 D---LLAKLSQSGHKRIETLFTNDLDHGPYISETL-------RVDPTNDRLSALVEIYRM 369 LL L + K I + ++++ + +++ N + L I Sbjct: 232 PATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSR 291 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 R A + F F + +GR N+ + + + +I ++ Sbjct: 292 FR---------ARTQFPPSFSNIK------IGRWFINQFVFVHLPNYN--DKYNLLILMI 334 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR--------VERAVKERLSL 481 +KL + GK D+ID + + G + + L V ++ +++ Sbjct: 335 QKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKS 394 Query: 482 GDLDTLMPQDMINAKP-ISAAVKEFFGSSQL--------------SQFMDQNNPLSEITH 526 GD + +++ I+ F + L D+ N L I+H Sbjct: 395 GDKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISH 454 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN---- 582 R ++ G +R + P +G CP+ TP+G GL+N LS Sbjct: 455 FR---SIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAA 511 Query: 583 ---EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE-----GHFVEDLV 634 +T I +S + I L + V+ L Sbjct: 512 QDPTVQKAQTLLPSFLAAHGMLPIDMVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLR 571 Query: 635 TCRSKG---------ESSLFSRDQVDYMDVSTQQVVSVGAS-LIPFLEHDDANRALMGAN 684 RS G E S V+ S + + GA + P + L+G Sbjct: 572 YLRSMGNEPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLTSGQNELIGPQ 631 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 Q + + + G S + + + D ++ + + +M Sbjct: 632 EQLYMEIAVVPHEVIKGVTTHIET---SPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQ 688 Query: 745 EAGIDIYNLTKYTRSNQNTCI---NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 G +++ R++ Q P V + + G N Sbjct: 689 TMGTPLHSYP--FRTDNKLYKVQNVQKPIVHTKNQFK----------FRCNDYPHGCNAV 736 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD--TKLGPEEITADIPNVGE 859 +A + GY+ ED++++++ + + ++ ++ PN Sbjct: 737 IAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVV 796 Query: 860 AALSK-LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 L K +D G+ ++G + G+ + P Q+T + K + E Sbjct: 797 DELDKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVR 849 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 75/429 (17%), Positives = 147/429 (34%), Gaps = 66/429 (15%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI--QSYSGNSELQYVSYRLGEP-- 78 ++ L+ +DSF F + G++ + P+ + S ++++ +L P Sbjct: 4 ELKSLIQPHIDSFDFFTDH------GIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTR 57 Query: 79 -------VFDVQECQIRGVTYSAPLRVKLRL--VIYEREAPEGTVKDIKEQE------VY 123 E + G TY+AP + + L V E +GT D +QE V Sbjct: 58 NIVEKEIKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVD 117 Query: 124 MGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDS 159 +G +P+M + G F++NG E+V+ + Sbjct: 118 LGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVAL 177 Query: 160 DKGKTHSSGKVLYNARIIPYRGSW---------LDFEFDPKDNL-FVRIDRRRKLPATII 209 + K ++ Y I R L + D + L F+ + LPAT++ Sbjct: 178 HR-KAWTNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLL 236 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 L+AL TTE +E ++ +N + V LR + + +I +V G R Sbjct: 237 LKALKDTTE---KEIYENIVQGDNENTFLTDRVELSLREQKIN-NINTQEEVLDYIGSRF 292 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 AR ++K+ + + Y D+ ++ + + Sbjct: 293 RARTQFPPSFSNIKIGRWFINQFVFVHLPN-YNDKYNLLILMIQKLYAMVGGKCGTDNID 351 Query: 330 HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF 389 + + +G + E L + + L + G+ +A + + + F Sbjct: 352 SPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGD-KLPDALKKVLDKNF 410 Query: 390 FSEDRYDLS 398 DR+ Sbjct: 411 KIADRFSYF 419 >UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=C6LZ34_GIALA Length = 1239 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 146/1066 (13%), Positives = 325/1066 (30%), Gaps = 158/1066 (14%) Query: 29 SIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF-------- 80 LDSF ++ + + + L+ + + Sbjct: 36 KHHLDSFNHLLDVTIPAIIKENPLL-----VVAKHPHFYLRIEKVDVKQVSHGSSKSPGS 90 Query: 81 --------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 EC+ R +TY+AP+ + +R + + + +++ +G IP+M Sbjct: 91 STGGNVGLTPHECRQRNMTYAAPITIDVRCRASNKSSVQ------YYKDICIGYIPIMLR 144 Query: 133 NGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 + ++ R + P G F K+ + + RI+ R + + E Sbjct: 145 SNRCILANKSRKQQAFFQECPDDPGGYFIVRGAEKSILLAEQITMNRIVLGRNTDGNIEV 204 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 N R R + ++ F + NK + +P Sbjct: 205 TVASNTTERKSR--------------------CAVLYKNKKFYLIHNKFNKKPIPIVTIF 244 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV---EYIAGKVVAKDYIDES 305 + F + + + +++ I +Y+A ++V + Y + + Sbjct: 245 KAMGFVNDVTVLSLIGTDQLFLDYMSLSVQECSNDKIYTQEQALKYLADRIVVRTYANTN 304 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 M + +S + + + ++ + SA Sbjct: 305 VNFPTSPVAMTAKASI-----ESARDCLAHFVLSHIPVVERLNLQQVAQNIQPQTSASTA 359 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL---SK 422 + T + ++ S + N + + Sbjct: 360 SNTSVSTHTGTTATSVGGKSGSVSAMAKPAIGSGASVVASNTGSTAPPVNMARFNWLPKA 419 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL- 481 + ++++ I G + D D +GN++I + G++ E F + + ++ + Sbjct: 420 VYLATMVRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDDAFKTLLAHMARKVDVI 479 Query: 482 --------GDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPL 521 DL +++ I+ A + SQ + + + + Sbjct: 480 LRSDKNRGTDLTNYDVVSLVDPSIITRAFNSAISTGNWKIERIGVDRVGVSQVLSRLSYI 539 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 S + R+S+ + R ++ + G CP +TPEG ++G++ +LS+ A+ Sbjct: 540 STLGQVTRLSS----TFDKAMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARI 595 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 ++ ++ K+ + +++ S + + + G ++ Sbjct: 596 SKDENADS-ISKLLMSIGVEDLA--SCWSGDTFSLGYG-YMVFLNGTIKG-VIAKDMLKG 650 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 + R +S L F +D+ + + R P L + + Sbjct: 651 FIITLRTFRRKGYIS---------YLTSFHFNDEHQAVYINCDSGRACRPLLIVENGKLK 701 Query: 702 TGMERAVAVDSGV--TAVAKRGGVVQYVD---ASRIVIKVNEDEMYPGEAGIDI------ 750 + + + G V+Y+D A I ++ ++ P +I Sbjct: 702 LTLNDIELLVNNQKCFVDFIYEGKVEYLDVNEAKNAYIAMDTKDLTPQHTHCEIESYTLL 761 Query: 751 ------YNLTKYTRSNQNTCINQMPCVSLG-------EPVERGDVLADGP---------- 787 + +S +N M + G E E L D P Sbjct: 762 GYVVGLIPYPHHNQSPRNCYQCSMGKQASGAIAFNQFERFETAMFLLDYPQRPLTSTKIL 821 Query: 788 -STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 T L GQN V M ++ ++ ED+++++ + + ++ T Sbjct: 822 KLTGYERLPAGQNATVCVMSYSSFDIEDALILNRSAIDRGFGRCSIYRSVSAELNSTGSK 881 Query: 847 PEEITADI---PNVGE----AALSKLDESGIVYIGAEVTGGDILVGK---VTPKGETQLT 896 + T D+ P + +++ G+ +GA + GDI++ K VT Sbjct: 882 SVDGTKDVLLGPPKDHLKQYESYHAVEDDGLCAVGAHLKTGDIVINKGRHVTNIPGLSDG 941 Query: 897 PE--EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 PE E L+++ SL+ P + V V T + + L E + + Sbjct: 942 PEAAETLIKSP----------ESLKSPLETITYIDKVLVTTNNDGNLLIKVLTREPRRPE 991 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 K S Q GL + L P + Sbjct: 992 VGDKFSSRHGQKGVCGLIVSQSDLPFTSQGIVPDLIMNPHGYPSRM 1037 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 89/434 (20%), Positives = 161/434 (37%), Gaps = 77/434 (17%) Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ---ILEAGLFSRIRAVLVAG 982 G + + + ++++ + L KD ++ + +E + A L G Sbjct: 863 GRCSIYRSVSAELNSTGSKSVDGTKDVLLGPPKDHLKQYESYHAVEDDGLCAVGAHLKTG 922 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + K R + + E L + + LK E + +T +D Sbjct: 923 DIVINKG------RHVTNIPGLSDGPEAAETLIKSPESLKSPLETITYIDKVLVTTNND- 975 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 ++KV RR + GDK + RHG KGV I D+P+ G D+++NP Sbjct: 976 ---GNLLIKVLTREPRRPEVGDKFSSRHGQKGVCGLIVSQSDLPFTSQGIVPDLIMNPH- 1031 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 G ++ K+ +L + ++ D + Sbjct: 1032 ---------------GYPSRMTVAKLLELLSNKSS---------------CFRGEQTDGT 1061 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 F + D AE+ + L+ SG+ LY G TG+ Sbjct: 1062 CFRTKT-------------------DEEFIAELYDSLRAAGFSYSGKDVLYSGLTGDVIP 1102 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + G +Y KL H+V DK+H+R TG +++T+QP G+ GG R GEME +YG Sbjct: 1103 VYIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVHGGLRMGEMERDCAISYG 1162 Query: 1283 AAYTLQEMLTVKSDDVNGRTK--------------MYKNIVDGNHQMEPGMPESFNVLLK 1328 A+ L E + SD+ G ++ +P + ++++ Sbjct: 1163 ASALLLERFMLSSDEFLAYVCEACGLFSYERNGALWCPTCQSGKDVVKIRIPYAAKLMIQ 1222 Query: 1329 EIRSLGINIELEDE 1342 E+ S+G+ + ++ E Sbjct: 1223 ELISMGVLVRMQLE 1236 >UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=B7XI25_ENTBH Length = 1107 Score = 299 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 97/434 (22%), Positives = 173/434 (39%), Gaps = 57/434 (13%) Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 ++P G++ V V + G + + + K + +E +I Sbjct: 719 KIPAGINAMVA---VMSYSGYDIEDAII--------VNKDSIERGFMRVEVYKTIKIEFE 767 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL--AEQYDELKHEFEKKLEAKRRKI 1036 G E +++ +E+G + + ++ ++ + + Sbjct: 768 RFTNGKTEEIYIVNGKEQIIEVGTHVMDGDILITKVSPIDKKLKTVKYKGHPGYIDTIIL 827 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 ++GDD KI+K+ + R ++ GDK + RHG KGV+ I P D+P++E G DI Sbjct: 828 SKGDDD-----KILKIKVRETRCVEIGDKFSSRHGQKGVVGLIVPQVDLPFNEYGVCPDI 882 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP G PSRM +G+ILE G+ Sbjct: 883 IMNPHGFPSRMTVGKILELIGSKVTCLTGEY----------------------------- 913 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 D + F + + + + + + ++L SG+ G Sbjct: 914 --TDATPFENNTADNDLKTIFNTTNQEPLHKEHRQTELLCQILIDHGYSYSGKDVFTSGI 971 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TGEQFE + G ++ +L H+V DK+H RS G +++T+QP G+++ GG R GEME Sbjct: 972 TGEQFEAYIFFGPIFYQRLKHMVADKIHCRSRGPRAVLTRQPTEGRSKDGGLRLGEMERD 1031 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV--------DGNHQMEPGMPESFNVLLK 1328 L YGA L E L SD+ + I+ + MP + +L + Sbjct: 1032 CLIGYGANSLLNERLMHCSDEFDAFICETCGIICYKERCYWCSKKPIIVKMPYACKLLFQ 1091 Query: 1329 EIRSLGINIELEDE 1342 E+ ++ I ++ E Sbjct: 1092 EMMAMNILPKIILE 1105 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 132/910 (14%), Positives = 295/910 (32%), Gaps = 113/910 (12%) Query: 100 LRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDS 159 + I E + ++ Y+ + + + T + N E++I Q R + + Sbjct: 29 IEKEIKEIVQANDIIDSDIDRNFYLRYLNIRVEKPTMIENMVEQIIYPQECRIRDITYAG 88 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTE 218 + +D E+ + ++ + K+P I + TT Sbjct: 89 NIY---------------------VDIEYIKNKEVIIKKNISMGKMPIMIRSSKCHLTTH 127 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 + ++K+ M + L I NG ++ KG Q Sbjct: 128 -------------MLNSKIIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVIHIQEQQS 174 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 K+ + +IE+ + + + ++ +I N + + + + L T Sbjct: 175 KNRI-IIEMGKNGLYTSMTSSSIKHKNKTNVIY-KNDKFYIQNTIFIEDVPI--VLVLKT 230 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 L+ I + + + E+Y E + + Sbjct: 231 LGLNTDEEIVSYIGKEGVELMELSFGEVYEKDIYTETDALIELSKFIKLKSDDNKEIKVK 290 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 ++ K ++ ++ + + +++KLI + + DD D+LGN+R G+ Sbjct: 291 SILAEKLFPNIKIDDDLKN---KGICLCLMIRKLILAKQNLLKPDDKDYLGNKRFELAGQ 347 Query: 459 MAENQFRVGLVRVE--------RAVKERLSLGDLDTLMPQDMINAKPISAAVKE-FFGSS 509 + F + + + +R+ + D L ++ + + G+ Sbjct: 348 LLSILFEDTFKKFNFELKKSIDKILSKRIRTNEFDALTFFNLQTGSITTTLSRAISSGNW 407 Query: 510 QLSQF-MDQNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIET 563 L +F M+++ +T I+ALG + R R +HP+ +G CP +T Sbjct: 408 NLKRFKMERSGVTHVLTRYSYITALGMMTKINSHFEKTRKVSGPRSLHPSSWGMFCPADT 467 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL--SAIEEGNYVIAQANS 621 PEG + GL+ +L++ + + + + + + ++ + S N + N Sbjct: 468 PEGESCGLVKNLALLTEISTESDSDI-IKNILQTLGVIKLKFCQESEFYAKNKFMVFING 526 Query: 622 NL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 L + + R +G+ + F + ++ + + + + L N Sbjct: 527 ELFGLTSNIEYLCCAIRKIRREGKINKFVSIFHNKLENAI-YISTDNGRICRPLIIIKKN 585 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS------------------------- 712 + ++ L+ G+ V V+ Sbjct: 586 SNFFTNYQFQCNKIKYKSFNDLLLEGLIEYVDVNEENDCLIALHKSNINNLNIENYTHLE 645 Query: 713 --GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 + ++ G++ + ++ + M G N+ K R + Sbjct: 646 IADYSILSLIAGLIPFPHHNQSPRNTYQCAMGKQAIGHIGTNIKK--RFDLLMLQLNY-- 701 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 P+ +L ++ G N VA M ++GY+ ED+I+V++ ++ Sbjct: 702 --TQRPLSCSKILDIN---KYNKIPAGINAMVAVMSYSGYDIEDAIIVNKDSIERGFMRV 756 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + + G E I N E I+ +G V GDIL+ KV+P Sbjct: 757 EVYKTIKIEFERFTNGKTEEIY-IVNGKEQ---------IIEVGTHVMDGDILITKVSPI 806 Query: 891 GETQLTPEEKLLRAIFGEKASDVK--DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 + T + K D L++ + V F+ +K L + Sbjct: 807 DKKLKTVKYKGHPGYIDTIILSKGDDDKILKIKVRETRCVEIGDKFSSRHGQKGVVGLIV 866 Query: 949 EEMQLKQAKK 958 ++ L + Sbjct: 867 PQVDLPFNEY 876 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 142/478 (29%), Gaps = 81/478 (16%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 +RKD L+ ++SF FIE++ + S N L+Y Sbjct: 1 MRKDGDLVDLFFADKNLVRQHIESFNYFIEKEIKEIVQANDIIDS-----DIDRNFYLRY 55 Query: 71 VSYRLGEPV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++ R+ +P QEC+IR +TY+ + V + + + I ++ Sbjct: 56 LNIRVEKPTMIENMVEQIIYPQECRIRDITYAGNIYVDIEYIKNKEV--------IIKKN 107 Query: 122 VYMGEIPLM------------------------------------TDNGTFVINGTERVI 145 + MG++P+M + G F+I G E+VI Sbjct: 108 ISMGKMPIMIRSSKCHLTTHMLNSKIIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVI 167 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP 205 Q +S + + + + + + +P Sbjct: 168 HIQEQQSKNRIIIEMGKNGLYTSMTSSSIK----HKNKTNVIYKNDKFYIQNTIFIEDVP 223 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 ++L+ L T++ + + K E+ + + A ++ Sbjct: 224 IVLVLKTLGLNTDEEIVSYIGKEGVELMELSFGEVYEKDIYTETDALIELSK-------- 275 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 +L+ DD K I+V D+ + IC M L +LAK Sbjct: 276 --------FIKLKSDDNKEIKVKSILAEKLFPNIKIDDDLKNKGICLCLMIRKL-ILAKQ 326 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 + + L + + L D L + + T E F Sbjct: 327 NLLKPDDKDYLGNKRFELAGQLLSILFEDTFKKFNFELKKSIDKILSKRIRTNEFDALTF 386 Query: 386 ENLFFSEDRYDLSAV--GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 NL LS + E + +L++ I + + I + + Sbjct: 387 FNLQTGSITTTLSRAISSGNWNLKRFKMERSGVTHVLTRYSYITALGMMTKINSHFEK 444 >UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 Tax=Neoptera RepID=RPA2_DROME Length = 1129 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 105/451 (23%), Positives = 163/451 (36%), Gaps = 81/451 (17%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 +++ + GT V V + G + + + + + + + L S A Sbjct: 728 IQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFA 787 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAE-QYDELKHEFEKKLEAKRRKI 1036 + LD L+ Y +K + ++ + + Sbjct: 788 RHPHMPELIKHLD-TDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQ 846 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 DL+P K+V + L V R GDK A R G KG+ S+ P ED+P+ E+G DI Sbjct: 847 LGSFDLSPK--KMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDI 904 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 V NP G PSRM I ++ET G A G+ Sbjct: 905 VFNPHGFPSRMTIAMMIETMAGKGAAIHGNVY---------------------------- 936 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 D + F E + ++L+ G G RLY G Sbjct: 937 ---DATPFRFSE-------------------ENTAIDYFGKMLEAGGYNYYGTERLYSGV 974 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 G + + G ++ +L H+V DK RSTG+ T QP+ G+ + GG RFGEME Sbjct: 975 DGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERD 1034 Query: 1277 ALEAYGAAYTLQEMLTVKSDD----VNGRTK-----------------------MYKNIV 1309 AL ++GAA+ LQ+ L SD V + + Sbjct: 1035 ALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCG 1094 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 D + +P SF L+ E+ S+ IN + Sbjct: 1095 DNSSVSMIEIPFSFKYLVTELSSVNINARFK 1125 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 103/682 (15%), Positives = 225/682 (32%), Gaps = 80/682 (11%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY-IAGKVVAKDYIDESTGEL 309 F I N K+ I + + + + V +D S Sbjct: 167 GIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVH 226 Query: 310 ICAANM-ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + + +LS I + D Y + +S + + R Sbjct: 227 YLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLR 286 Query: 369 MMRPGEPPTREAAESLFENLF-----FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 ++ T +S NLF + V ++ Sbjct: 287 EVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYE--DKFQ 344 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF----RVGLVRVERAVKERL 479 I+ +++KL GK +V+++D + + G + + + +V R ++++L Sbjct: 345 LIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKL 404 Query: 480 SLGDL---DTLMPQDMINAKPISAAVKEFFGSSQLSQ--------------FMDQNNPLS 522 + D +M Q M A + A++ F + ++ + N + Sbjct: 405 TSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMR 464 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++H R A+ G E R + P +G +CP+ TP+G GL+N L++ + + Sbjct: 465 YMSHFR---AIHRGSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEIS 521 Query: 583 EYGFLE----TPYRKVTDGVV-TDEIHYLSAIEEGNYVIAQANSNL------DEEGHFVE 631 + P + G++ YL + + E V+ Sbjct: 522 MRPDPKLVKAIPKHLIDMGMMPLSNRRYLG----EKLYVVFLDGKHLGHIHQSEAEKIVD 577 Query: 632 DLVTCRSKG------ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA-LMGAN 684 +L + G E + + + A ++ + + R +G Sbjct: 578 ELRYGKIFGTLPQMMEIGFIPFKK--NGQFPGLYIATGPARMMRPVWNLKWKRVEYIGTL 635 Query: 685 MQRQAVPTLRADK--PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 Q + A + P T +E A ++ ++ D ++ + + +M Sbjct: 636 EQLYMEIAIDAKEMYPDFTTHLELAK-----THFMSNLANLIPMPDYNQSPRNMYQCQMG 690 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 G L ++ Q P L PV ++ D + A+G N V Sbjct: 691 KQTMG--TPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLD-------DFAMGTNAIV 741 Query: 803 AFMPWNGYNFEDSILVSERVVQEDR-FTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 A + + GY+ ED++++++ + + +I+ + + + + P++ E Sbjct: 742 AVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARH-----PHMPE-L 795 Query: 862 LSKLDESGIVYIGAEVTGGDIL 883 + LD G+ + G++++ G L Sbjct: 796 IKHLDTDGLPHPGSKLSYGSPL 817 >UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQY8_ENCCU Length = 1110 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 145/942 (15%), Positives = 300/942 (31%), Gaps = 191/942 (20%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 + L+ ++S+ F++ + + S L+Y+ R+ Sbjct: 10 IKLFFNEKGLVRQHIESYDYFVDHEIKALVRANQIVDS-----DIDHTFYLKYLDIRVAM 64 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P V+ +V Y E ++DI T + Sbjct: 65 PS------------------VEENMVNYNVFPIECRLRDI-------------TYSANIY 93 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 ++ E V Q+ V + R S + K + R Sbjct: 94 VD-IEYVRNRQIIVKRDVCIGKMP---------------VMLRSSRCHLRRETKGPMEGR 137 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 + R++ + + + + I ++ L+ E+L + Sbjct: 138 KTKDRRI-------------RESQECPLDVGGYFIVRGIERVVLIQEQL----------S 174 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 ++ +E G + + + V + + +E ++ A + Sbjct: 175 KNRIIIESGPKGLFASVTSSTDEHKSKTSVTTRDDCYYLKNSMFSEEVPVVIMMKALGLV 234 Query: 318 SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI--YRMMRPGEP 375 +A+ + I P E + R AL+ I Y ++P + Sbjct: 235 QDREVAECVGKEYFEIMV---------PSFGECMSK-GIFTREQALLYISSYIKLKPEDN 284 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 E L E + + + + I ++++L Sbjct: 285 RIEEVLTVLSEKVLPNVQ------IEGCDLRKK-------------GIYIALMVRRLAQT 325 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-------SLGDLDTLM 488 + DD D +GN+R G++ F R +K+ + S + Sbjct: 326 KLNILREDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQEFDAL 385 Query: 489 PQDMINAKPISAAVKEFF--GSSQLSQF-MDQNNPLSEITHKRRISALGP-----GGLTR 540 + A I++ + G+ L +F M+++ ++ ISALG + Sbjct: 386 TFLNLQANMITSTLARAISTGNWNLKRFRMERSGVTHVLSRHSYISALGMMTKINSHFEK 445 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 R R +H + +G +CP++TPEG + GL+ +L++ A+ P + Sbjct: 446 TRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITT-NSDTKPILDTVYKLGV 504 Query: 601 DEI--HYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 +I Y I + + N ++ + VE R KG F ++ Sbjct: 505 VDINSVYTREIHQKDMFSVFLNGDIIGITNRADFLVEQFKLHRRKGLVGKFVSIYKVTVE 564 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG- 713 + S + L D NR Q + + + D+ L + VA++SG Sbjct: 565 -RVIHIASDNGRVCRPLIIIDKNRI-------NQTIISNQMDECLKALNISEKVAIESGK 616 Query: 714 ----------VTAVAKRGGVVQYVDASR---IVIKVNEDEMYPGEAGIDI---------- 750 G ++Y+D + ++ + +++ ++I Sbjct: 617 SLFDCYLKYKSFTDLLEEGFIEYLDVNEENDCLVALKPEDIGEETTHLEISEFAILGYVA 676 Query: 751 --YNLTKYTRSNQNTCINQMPCVSLG---------------------EPVERGDVLADGP 787 + +S +NT M ++G P+ +L Sbjct: 677 GLVPFPHHNQSPRNTYQCAMGKQAIGHISLNVKKRFDSVILQLTYTHRPMVSTKIL---D 733 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 + E+ GQN VA M ++GY+ ED++++++ V+ F + + + G Sbjct: 734 LINYNEIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERGLFRVEVYKTTTTLLKKHSNGM 793 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 ++ PN E+ LDE G+ G V G + V K++P Sbjct: 794 SDVLW--PNPKESV---LDEDGLGKPGKMVRDGTVYVNKMSP 830 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 81/432 (18%), Positives = 140/432 (32%), Gaps = 70/432 (16%) Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 +P G + V + + + + E+ L + + Sbjct: 740 IPAGQNAMVAVM------SYSGYDIEDALVLNKTSVERGLFRVEVYKTTTTLLKKHSNGM 793 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 K L D + G + + + D K I + Sbjct: 794 SDVLWPNPKESVLDEDGLGKPGKMVRDGTVYVNK-MSPVDGTYKFTGKVHRGDPAYIDKI 852 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 ++K L R + GDK + RHG KGV+ + EDMP+++ G DI Sbjct: 853 LITKSQDQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDI--- 909 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 I+ H + +G + Sbjct: 910 ------------IMNPHGFPSRMTVGKIV------------------------------- 926 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 E++ + +G + + F + ELL SG+ G TG Sbjct: 927 --------ELISGKAGVLEGQILDSTAFKENSVEQTCELLIKHGFSYSGKDCFTSGTTGA 978 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + G ++ +L H+V DK+H R+ G +++T+QP G+++ GG + GEME L Sbjct: 979 PLAAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLI 1038 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKM---------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 YGA+ + E L SD G ++ MP + +L +E+ Sbjct: 1039 GYGASSLITERLMTSSDVFEAYVCRSCGVLAFKGCCVACKGTKPVKVKMPYACKLLFQEL 1098 Query: 1331 RSLGINIELEDE 1342 S+ I L E Sbjct: 1099 MSMNILPRLHIE 1110 >UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium cardiacum RepID=B2X1Z2_OEDCA Length = 739 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 137/357 (38%), Positives = 193/357 (54%), Gaps = 43/357 (12%) Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD---DL 1042 + K E + + Q ++L ++ D+ + + + D +L Sbjct: 418 KKFYRKNNNQELTERTINKTNIKLQFQKLRQKKDKKFYSINNDEAEQNVLPRKKDFSLNL 477 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 + VYLA KR+IQ GDK+AGRHGNKG++SKI PI+DMPY +G+ VD+VLNPLG Sbjct: 478 FNSKPFTIHVYLAEKRKIQVGDKIAGRHGNKGIVSKILPIQDMPYLADGSFVDLVLNPLG 537 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 VPSRMN+GQI E LG+A +G+ + + +G + + S Sbjct: 538 VPSRMNVGQIYECLLGLAGYYLGEYYRILPFDE--------------KIGEEASRSFVFS 583 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + + L D G+ L+DGRTGE+FE Sbjct: 584 KLYEAGMKTGN-------------------------YWLFDPKNPGKTYLFDGRTGEKFE 618 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + V +GY Y+LKL HLVDDK+H+RSTG YS VTQQPL G+++ GGQR GEMEVWALE YG Sbjct: 619 QQVMIGYAYILKLVHLVDDKIHSRSTGPYSAVTQQPLRGRSKQGGQRLGEMEVWALEGYG 678 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AA+TL E+LT+KSDD GR ++ +I+ PESF VL+ E+++L +I + Sbjct: 679 AAFTLLELLTIKSDDKIGRLTIWDSILRQKEIS-IKTPESFKVLVCELKALCFDIGI 734 Score = 200 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 137/247 (55%), Gaps = 2/247 (0%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y+L Y RSNQ+TC+ P ++ G V+ GD+LAD S+ GELA+GQN+ +A+MPW GY Sbjct: 11 YHLENYHRSNQDTCLVHRPTINEGNWVQPGDILADCSSSKNGELAIGQNILIAYMPWEGY 70 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED++L+S+R+V ++ +T+IHI+ +T+ G E+IT ++ ++ LS LD++GI Sbjct: 71 NYEDAMLISDRLVYDEIYTSIHIERYEISIEETQFGFEKITKELYDLPGENLSHLDKNGI 130 Query: 871 VYIGAEVTGGDILVGKVTPKGET-QLTPEEKLLRAIFGEKASDV-KDSSLRVPNGVSGTV 928 +G+ + GDILVGKVTP + + + EKLL I G K + KD+SLRVP G+ V Sbjct: 131 TVLGSWLKEGDILVGKVTPTDKKVKYSNYEKLLYDILGTKKQNKGKDTSLRVPKGLEAKV 190 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 I +++ + + I ++ ++ + + Sbjct: 191 ITIEILSDNLSFSLTNFNLISLPNPLIYIQNRFLRFLNIQNKKNINSTHFAFDNKFKNQF 250 Query: 989 LDKLPRD 995 L R+ Sbjct: 251 LKISSRN 257 >UniRef50_C9SKJ8 DNA-directed RNA polymerase n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SKJ8_VERA1 Length = 1105 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 94/486 (19%), Positives = 168/486 (34%), Gaps = 84/486 (17%) Query: 876 EVTGGDIL--VGKVTPKGETQLTPEE----KLLRAIFGEKASD---VKDSSLRVPNGVSG 926 E+ IL V + P +P + + G A + D+ L Sbjct: 677 EIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQR 736 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 ++ + +K + + + D+ + L + + + + Sbjct: 737 PMVISKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALLWILMAWPWSVARSGLGEAMVK 796 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 ++ P D D + +K + ++ K Sbjct: 797 KE---TPLDTGSTGIGNDRGPSEFRDSSISYRIPDPAYIDKVMISQSEK----------D 843 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 ++KV RR + GDK + RHG KGV+ I ED+P+ + G DI++NP G PSR Sbjct: 844 NMVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPSR 903 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 +G + + + + ++ Sbjct: 904 ---------------MTVGKLLECLTGKASVLDGRPDYGF-------------------- 928 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 F ++ E L G+ G TGE E + Sbjct: 929 -----------------GDAFRSHPLKQMSEALVDHGFSWEGKDYFTSGITGEPLEAYIF 971 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G +Y +L H+V DKMH+R+ G +++T+QP G+++ GG R GEME L AYGA+ Sbjct: 972 NGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSREGGLRLGEMERDCLIAYGASQL 1031 Query: 1287 LQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 L E L + SD D+ + + MP + +L++E+ S+ + Sbjct: 1032 LLERLMISSDGTEIDICQQCGLFGYKGYCHTCRSTKEVTKMTMPYAAKLLVQELISMNVG 1091 Query: 1337 IELEDE 1342 + L+ E Sbjct: 1092 VRLQME 1097 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 112/756 (14%), Positives = 228/756 (30%), Gaps = 107/756 (14%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR---- 200 +V Q S F D + + + + R WL+F D + R+D Sbjct: 44 LVKQHIDSYNFFVDHEIKDIVRANRTI---RSDVNSSFWLEF-TDIRVESPSRLDFNDAR 99 Query: 201 --RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET-------- 250 P LR + Y +D+ + + +I + + +P L+ Sbjct: 100 AHSEVTPMECRLRDMTYGAPIFVDIAYIRDKSKIVRRNVPLGRLPVMLKSAKCRLNGASN 159 Query: 251 --------------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 F I KV + + + R I + ++ + + + Sbjct: 160 KEMALMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKNNIITASVTSSTHERK 219 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSG-HKRIETLFTNDLDHGPYISETL---- 351 + + + + ++ L G +E + D G Y E Sbjct: 220 TKTNITLKKDRISLVHNVLVEPAPIVIVLKALGGLSDLEIMQLVAGDDGRYQDEFTVNFD 279 Query: 352 --RVDPTNDRLSALVEIYRMMRPG----EPPTREAAESLFENLFFSEDRYDLSAVGRMKF 405 + AL I ++ G P +A ++ E + ++ + Sbjct: 280 EATKQGVYTQQQALEWIGSRVKMGGRGRFQPNSQARKNNIEEGMDALSNLIIAHIPVEGL 339 Query: 406 NRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 + + ++++ + VDD D +GN+R+ G++ F Sbjct: 340 -----------DFYPKAIYVAFMTRRVLMAQANMSLVDDRDFVGNKRLELAGQLLSLLFE 388 Query: 466 VGLVRVERAVK-------ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS---QFM 515 + VK ++ + + +A I + + + M Sbjct: 389 DLFKKFCGDVKASIDKVLKKDNRAVAMDAVTMISNHANNIGQGINRAIQTGNWTVKRFNM 448 Query: 516 DQNNPLSEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 ++ ++ ISALG + R R + P+ +G +CP +TPEG G Sbjct: 449 NRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACG 508 Query: 571 LINSLSVYAQTNEYGFLETPYRKVT-DGVVTDEIHYLSAIE---EGNYVIAQANSNLDE- 625 L+ +L++ E R V + I S E EG+Y+I + Sbjct: 509 LVKNLALMTHITTNAEEEPVKRWVFTVDDNVEPIRNFSGSEMHREGSYIIHINGTPFALT 568 Query: 626 --EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 F T R +G S F ++ + G P++ + L Sbjct: 569 KFPKRFTNRFRTMRRRGWISPFVGVHINNHFNAVHIATDEGRICRPYIIVKNGKPKLKAE 628 Query: 684 NM----------------QRQAVPTLRADKPLVGTGMERAVAVDSGV------TAVAKRG 721 ++ + + + E V + T + Sbjct: 629 HLKLLQLGKATFDDFLTNGVVEYLDVNEENDTLVALYETDVNQSTTHMEIEPFTILGAVA 688 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G++ + ++ + M G+ I ++ R + V P+ Sbjct: 689 GLIPFPHHNQSPRNTYQCAM--GKQAIGAIAYNQFNRIDTLLYT----LVYPQRPMVISK 742 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 + +L GQN V M ++GY+ ED++L Sbjct: 743 TI---QLIHYDKLPAGQNATVVVMSYSGYDIEDALL 775 >UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota RepID=Q0UYS5_PHANO Length = 1616 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 88/478 (18%), Positives = 147/478 (30%), Gaps = 116/478 (24%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ I + ++ + + S++ V A Sbjct: 1191 MDDAMILNKSAHERGFGHGTIYKTKICDLE---EGARRNRSGRTISKLFGFAPDSLVPAS 1247 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD-------------ELKHEFEKKLEAKRR 1034 + + L D +G YD E +L Sbjct: 1248 RKETLDEDGLPRIGTLLRNGDAIAAWHTVSYDAASDDYVNRDANTNYFKYKEDELAFVEE 1307 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 G + + + + L V R GDK + RHG KGV S+ P DMP+ E+G Sbjct: 1308 VRIIGSEDGTQPCQKLSIKLRVPRSPVIGDKFSSRHGQKGVCSQKWPSIDMPFSESGIQP 1367 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 D+++NP P + IG + ++ + GA Sbjct: 1368 DVIINPHAFP---------------SRMTIGMFVESLAGKA----------------GAL 1396 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 D + F +E L G +Y Sbjct: 1397 HGIAQDSTPFRFDEQ-------------------NTAVDFFGHQLMKAGYNYYGNEPMYS 1437 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 G TG++ + +G +Y +L H+V+DK R+TG + T QP+ G+ + GG R GEME Sbjct: 1438 GITGQELAADIYIGVVYYQRLRHMVNDKYQVRTTGPINSTTGQPIKGRKKGGGIRVGEME 1497 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTK----------------------------MYK 1306 AL A+G A+ LQ+ L SD + Sbjct: 1498 RDALIAHGTAFLLQDRLMNCSDYTKAPICRECGSFLSTAPTVSEYGRKKDRGAQLTIRCR 1557 Query: 1307 NIVD----------------------GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G + +P L E+ S+G+ ++ + E Sbjct: 1558 RCAKPADGITNKADVWMDGQGMRFQGGENIGVVAVPGVLKYLDVELASMGVKLKFKVE 1615 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 56/475 (11%), Positives = 144/475 (30%), Gaps = 64/475 (13%) Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 ++ + ++ L + D + T +V + + + Sbjct: 258 MVLKSLVETNDREIFEGLVGAAGSEGLAEKQFVTDRVELLLRTYKVYGLHSKAKTRAYLG 317 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 + + + ++ E R L +G ++ Sbjct: 318 QKFKVVLQIPEDTSDE--EAGTEFLRRIVLPHLGAY--------HITPAQDADKFRMLLF 367 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK----------- 476 +++KL + G+ VD+ D + N+ I G++ + L ++++ Sbjct: 368 MIRKLYSLVEGECCVDNPDAVQNQEILLGGQLYGMIMKERLDDWLQSMRPVLQDWGRRTE 427 Query: 477 -ERLSLGDLDTLMPQDMINAKP--ISAAVKEFFGSSQL--------------SQFMDQNN 519 + + ++ I A++ F + L ++ N Sbjct: 428 WRPFTSQEFQKDFISKILRRSQTDIGRAMEYFLSTGNLISPTGLDLQQTAGFVVVAEKIN 487 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 I+H R + G E VR + P +G +CP+ TP+G GL+N S Sbjct: 488 FYRFISHFRMV---HRGAFFAELKTTTVRKLLPESWGFMCPVHTPDGAPCGLLNHFSHKC 544 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL------DEEGHFVEDL 633 + + K+ + S+ V+ Q + + + + L Sbjct: 545 KLATQNVDVSAIPKLVAQLGVSSK---SSASIEASVVVQLDGRVLGFCSPKQAKVIADTL 601 Query: 634 VTCRSKGESSLFSRDQVDYMDVS------TQQVVSVGASLIPFLEHDDANRALMGANMQR 687 + +G ++ ++ Y+ S ++S A + +++ ++ ++ Sbjct: 602 RYWKVEGSHNVPLEMEIGYVPNSNGGQYPGVYMMSQVARMYRPVKYLPLDKLDYVGPFEQ 661 Query: 688 QAVPTLRADKPLV---GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 + D +V T +E + + + D ++ + + Sbjct: 662 PYMSIACTDAEIVSGDSTHVEYD-----PTNIFSIVANMTPFSDFNQSPRNMYQC 711 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 58/178 (32%), Gaps = 17/178 (9%) Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 + + + +DA++ +M G + R++ T Q + Sbjct: 1102 TVEYSDNDKIQEVIDAAQKPFFTGNCQMGKQSMGTPGTAMRY--RTDNKTYRLQTGQTPV 1159 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 P + G N VA + + GY+ +D++++++ + Sbjct: 1160 VRPPLHNEY-------GFDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIY 1212 Query: 834 QELACV----SRDTKLGPEEIT----ADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 + C +R + G A V + LDE G+ IG + GD + Sbjct: 1213 KTKICDLEEGARRNRSGRTISKLFGFAPDSLVPASRKETLDEDGLPRIGTLLRNGDAI 1270 Score = 69.9 bits (169), Expect = 7e-10, Method: Composition-based stats. Identities = 66/473 (13%), Positives = 133/473 (28%), Gaps = 63/473 (13%) Query: 9 KRIRKDFGKRPQVLD-VPYL---LSIQLDSFQKFIEQDPEGQYGLEAAFRSVF------- 57 KR F P+ P L + ++SF + + L+ VF Sbjct: 21 KRRHDLFSNPPKDSTAYPTLAAAVDPHINSFNSIFAAGGQLEEALKDIGTKVFLDGNPYA 80 Query: 58 -PIQSYSGN-----SELQYVSYRLGEPV---------FDVQECQIRGVTYSAPLRVKLRL 102 P + N + ++ + P EC+ R TY LR +L Sbjct: 81 RPEEVGQRNRLSVRIQDVFLDKSVLPPSNKVALKNRNILPAECRERHATYRGKLRARLEW 140 Query: 103 VIYEREAPEGTVKDIKEQEVYMGEIPLMTD-----------NGTFVINGTERVIVSQLHR 151 + D +E+ +G +P+M G F++NG E++I Sbjct: 141 KVNN--------GDWREEVCDLGAVPIMLRLVKAKEESEELGGYFIVNGIEKIIRMLQVN 192 Query: 152 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRR-- 202 F + K ++ Y I R D + N+ +R R+ Sbjct: 193 RRN-FPMAIKRGAFTNRGPGYTQYGILLRSMRPDQTSQTNALHYLSDGNVNLRFSWRKAE 251 Query: 203 -KLPATIILRALN-YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 +P ++L++L +I + E K + E L + + + K Sbjct: 252 YLVPVMMVLKSLVETNDREIFEGLVGAAGSEGLAEKQFVTDRVELLLRTYKVYGLHSKAK 311 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI----DESTGELICAANME 316 G++ + D + + I + +I D ++ + Sbjct: 312 TRAYLGQKFKVVLQIPEDTSDEEAGTEFLRRIVLPHLGAYHITPAQDADKFRMLLFMIRK 371 Query: 317 LSLDLLAKLSQSGHKRIE-TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 L + + ++ I + D L + R P Sbjct: 372 LYSLVEGECCVDNPDAVQNQEILLGGQLYGMIMKERLDDWLQSMRPVLQDWGRRTE-WRP 430 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 T + + F + + D+ + L + ++ Sbjct: 431 FTSQEFQKDFISKILRRSQTDIGRAMEYFLSTGNLISPTGLDLQQTAGFVVVA 483 >UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=Archaea RepID=RPOB1_METTH Length = 603 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 96/411 (23%), Positives = 160/411 (38%), Gaps = 81/411 (19%) Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 E + + + L+ A + +G V K ++ Sbjct: 256 RFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPPRFLEEID-EFGTVA 314 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 ++ + + ++ E + L + + ++ K+ + +R+ + GDK Sbjct: 315 ERRRETSVTVRHGEKG-IVDAVLLTETVE----------GSRLAKIRVREQRQPELGDKF 363 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 A RHG KGV+ I EDMP+ E+G D+++NP H + +G Sbjct: 364 ASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNP---------------HAIPSRMSVGQ 408 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + + + +G + Sbjct: 409 VLEMLAGKAA---------------------------------------CMEGRRVDGTP 429 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F G E +IKE L+ T+G LY+G TGE+ E + +G Y KL+H+ DK++AR Sbjct: 430 FTGEDEDDIKEALRANGFETAGVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDKVYAR 489 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG------ 1300 S G ++T+QP G+A+ GG RFGEME L A+GAA L+E L +SD Sbjct: 490 SRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCADC 549 Query: 1301 ---------RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R K Y I + + + +F +LL E++SL I +L E Sbjct: 550 GMIAVYDKIRDKKYCPICEDSESFPVEVSYAFKLLLDELKSLCIFPKLILE 600 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 81/422 (19%), Positives = 140/422 (33%), Gaps = 57/422 (13%) Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 + + G + C + E R + +VS + ++ D RA Sbjct: 4 TKIYINGKLIGT---CENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRA- 59 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA----------- 729 R+ + + +PL+ + G+++Y+DA Sbjct: 60 ------RRPLIIVEDGEPLLTEEHLEKLETGEMSWDDLIAAGIIEYLDAEEEENAYIAMS 113 Query: 730 -SRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 I + E+ P I + S +NT M +LG D+ D Sbjct: 114 PDEINDEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTD 173 Query: 786 GPS------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 + T E GQN VA M + GYN ED++++++ ++ Sbjct: 174 TRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGL 233 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVG------EAALSKLDESGIVYIGAEVTGGD 881 + + R G E+ +IP G E+ LDE GI+ AEV+ GD Sbjct: 234 ARSSFFRSYEAAERRYPGGQED-RFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGD 292 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 +L+GK +P + E FG A +++S+ V +G G V V + + Sbjct: 293 VLIGKTSPPRFLEEIDE-------FGTVAERRRETSVTVRHGEKGIVDAVLLTETVEGSR 345 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 + E+ Q + K S Q GL + L P + Sbjct: 346 LAKIRVREQRQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMS 405 Query: 1002 LT 1003 + Sbjct: 406 VG 407 >UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas RepID=C1FDM4_9CHLO Length = 1192 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 117/519 (22%), Positives = 181/519 (34%), Gaps = 115/519 (22%) Query: 888 TPKGETQLTPEEKLLR--------AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 P P+ K+ R A+ G+ D+ P G + V+ V T + Sbjct: 719 MPLHSFCYRPDTKIYRLHTPQRPVAMTGQYDKYQMDN---YPLGTNA-VVAVIAHTGYDM 774 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG---GVEAEKLDKLPRDR 996 E + + E L AG V G +K P D Sbjct: 775 EDAMIVNKGAMERGLGHATLYKTETVTLVAGSDENFGQCNVIQQKLGSPIAFTEKHPFDP 834 Query: 997 WLEL-----GLTDEEKQNQLEQLAEQYDELKHEFEKK----LEAKRRKITQGDDLAPGVL 1047 ++ + ++ + L + ++ + K + R I+ G Sbjct: 835 DIDTDGAPRPGSIKQAGSTLCSVVDRSTGRVRLHKIKGSDHVIIDRVSISSGKASKGQTE 894 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSR 1106 + V + R GDK + RHG KGV+S + P ED+PY E +G+ DI++NP PSR Sbjct: 895 TKMSVTVRCDRNPIIGDKFSSRHGQKGVLSFLCPEEDLPYIEKSGSRPDILINPHAFPSR 954 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 M IG +LE+ A GA + +D S F Sbjct: 955 MTIGMLLESMASKA-------------------------------GALDGRFIDASPFQA 983 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 + + E E+L+ SG + +G TGE+F+ + Sbjct: 984 ANDETHIISPTR---------------EYGEMLRKHGYNYSGSETMVNGLTGERFDVDIF 1028 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG +Y +L H+V DK RS G + +TQQP+ G+ GG RFGEME AL A+G++Y Sbjct: 1029 VGLVYYQRLRHMVSDKFQVRSLGPNNPLTQQPIKGRKAGGGIRFGEMERDALIAHGSSYL 1088 Query: 1287 LQEMLTVKS--------------------------------------------DDVNGRT 1302 + + L S DD+ R Sbjct: 1089 IHDRLHACSDRHVTSLCTYCGSLLAPGANIQMAATHQVHASGAGNGQGRLHSFDDIFPRK 1148 Query: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + G +P F L E+ ++ I I LE Sbjct: 1149 VSCRVCNTGTGVHNVALPFVFKYLAAELAAMNIRIGLEV 1187 Score = 252 bits (643), Expect = 8e-65, Method: Composition-based stats. Identities = 110/889 (12%), Positives = 250/889 (28%), Gaps = 127/889 (14%) Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL---DLFFEKVIFEIRDNKLQ 238 +W + RI + A+ + ++ ++++ + E + I + Sbjct: 115 AWTFGDVGAIFRREFRICMFPVMVASKVCNLFGFSQDELICRGEEGHEMGGYFILNGN-- 172 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 E + L + + + K Y +G T + + + A Sbjct: 173 -ERIIRLLVQQRRHYIMGMKRKAYSSRGPIYTHYATAIRCSANDEHTSTVRIHYTSDGSA 231 Query: 299 KDYIDESTGE------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 + E +I A E S ++ + G + ++ I Sbjct: 232 RLVFVHRRKEYFVPAGIILRALAEFSDSVVQAIVARGLTGLGA-QVFAIERIRIILGEAA 290 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 ++++ AL + R E + KFN Sbjct: 291 TFGIHNKVQALAYLGEHFRAQLDANPWETNFDVGKRLICEHIFIHLQSDEDKFN------ 344 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 ++ +M+KL + G+ D+ D L + I G + + R L Sbjct: 345 -----------LVLLMMQKLYALVAGQCSADNPDSLMHHEILLPGILMQIFVREKLQDAL 393 Query: 473 RAVKERLSLGDLDTLMPQDM-------------INAKPISAAVKEFFGSSQLSQ------ 513 K L+ + I I + F + LS Sbjct: 394 HKAKIALNREFEENPNHASADDGEWLSQVAIEAITKTNIGRLAEYFLATGNLSSRTGLGL 453 Query: 514 --------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 D+ N + I+H R ++ G E VR + P +G +CP+ TP+ Sbjct: 454 TQTSGFTIVADKLNYMRYISHFR---SVHRGAYFAELRTTTVRKLLPESWGFLCPVHTPD 510 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGN----------YV 615 G GL+N L+ + R V + A+ ++ Sbjct: 511 GSPCGLLNHLAASCYIHVACESTGEARDRARSQVLKVLSSAGALILHGSTSLGSAPPAHL 570 Query: 616 IAQANSNL------DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 + + + V L + G + + S ++ ++ +S+ L Sbjct: 571 TVMLDGLILGFVADSDAKVVVSALRAAKVSGSNGVSSHLEIAHIPLSSCGYGGAFPGLYL 630 Query: 670 FLEHDDANRALM---------GANMQRQAVPTLRADKPLVGTGMERAVAVDSG-VTAVAK 719 F R ++ ++++ + D T + ++G T ++ Sbjct: 631 FSTSSRMMRPVIQQQNRITENIGSLEQAFMSIRCPDGRQKPTCIAEHAHEENGPGTILSV 690 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 + + D ++ + + +M G+ +++ R + P + + Sbjct: 691 VASLTPWSDFNQSPRNMYQCQMAKQTMGMPLHSFCY--RPDTKIYRLHTPQRPVAMTGQY 748 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 D LG N VA + GY+ ED+++V++ ++ + Sbjct: 749 DKYQMDN-------YPLGTNAVVAVIAHTGYDMEDAMIVNKGAMERGLGHATLYKTETVT 801 Query: 840 S---RDTKLG-----PEEITADIPNVGEAALS-KLDESGIVYIGAEVTGGDILVGKVTPK 890 D G +++ + I + +D G G+ G L Sbjct: 802 LVAGSDENFGQCNVIQQKLGSPIAFTEKHPFDPDIDTDGAPRPGSIKQAGSTLCS----- 856 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 + V+ ++ + +ID + K + ++ Sbjct: 857 --------------VVDRSTGRVRLHKIKGSDH---VIIDRVSISSGKASKGQTETKMSV 899 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + ++ G + + + + D + Sbjct: 900 TVRCDRNPIIGDKFS-SRHGQKGVLSFLCPEEDLPYIEKSGSRPDILIN 947 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 75/472 (15%), Positives = 149/472 (31%), Gaps = 84/472 (17%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI---------QSYSGNSELQYVSYR 74 + + L SF F++ GL R + I S S ++ + + Sbjct: 22 LRGVARNHLASFDYFLDH------GLSDVVRCLDNISIQPSGAQNTSSSPRFKMWFENIS 75 Query: 75 LGEP-------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 +G P +EC+ TY AP+ + G V I +E Sbjct: 76 IGRPIREDTTAVRARDPRVFPRECRESSNTYKAPMLATVAWTF-------GDVGAIFRRE 128 Query: 122 VYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFF 157 + P+M + G F++NG ER+ + L + + Sbjct: 129 FRICMFPVMVASKVCNLFGFSQDELICRGEEGHEMGGYFILNGNERI-IRLLVQQRRHYI 187 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGS---------WLDFEFDPKDNL-FVRIDRRRKLPAT 207 K K +SS +Y R S + + D L FV + +PA Sbjct: 188 MGMKRKAYSSRGPIYTHYATAIRCSANDEHTSTVRIHYTSDGSARLVFVHRRKEYFVPAG 247 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 IILRAL ++ ++ + + + +E + + GE A+F I + G Sbjct: 248 IILRALAEFSDSVVQAIVARGLTGLGAQVFAIERI-RIILGEAATFGIHNKVQALAYLGE 306 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 A+ + + +V I + DE L+ +L + + S Sbjct: 307 HFRAQLDANPWETN---FDVGKRLICEHIFIHLQSDEDKFNLVLLMMQKLYALVAGQCSA 363 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRL-SALVEIYRMMRPG-EPPTREAAESLF 385 + +++ + + + D L A + + R + + E L Sbjct: 364 DNPDSLMH---HEILLPGILMQIFVREKLQDALHKAKIALNREFEENPNHASADDGEWLS 420 Query: 386 ENLFFSEDRYDLSAVGRMK-----FNRSLLREEIEGSGILSKDDIIDVMKKL 432 + + + ++ + + + SG D ++ M+ + Sbjct: 421 QVAIEAITKTNIGRLAEYFLATGNLSSRTGLGLTQTSGFTIVADKLNYMRYI 472 >UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax=root RepID=RPOB1_METJA Length = 636 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 98/469 (20%), Positives = 173/469 (36%), Gaps = 92/469 (19%) Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL----EIEEMQLK 954 + + AI + +++D+ + + + + F + + E Sbjct: 209 QNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACERRYPGGQMDRFEIPDKG 268 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL 1014 E + LE + + + G V K E+ + + Q + + Sbjct: 269 VRGYRSEECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLEEHEITIQVK-PQRRDSSV 327 Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 ++ E +K + + ++VKV + R + GDK A RHG KG Sbjct: 328 VVRHGEEG-YIDKVILTE----------TKEGNRLVKVKVRDLRIPELGDKFASRHGQKG 376 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 V+ P ED+P+ E+G DI++N H + +G + + Sbjct: 377 VMGLTVPQEDLPFTESGIVPDIIIN---------------PHAIPSRMTVGQLLEML--- 418 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 +G I +F G KE + Sbjct: 419 ------------------------------------GGKVGALEGRRIDGTIFSGEKEWD 442 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 +++ L+ G+ +YDG+TG++FE + +G Y KL+HLV K+HARS G ++ Sbjct: 443 LRKALEALGFKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVL 502 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------------------ 1296 T+QP G+A+ GG RFGEME L +GAA L+E L +SD Sbjct: 503 TRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFAILDY 562 Query: 1297 ----DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 +N+ +P +F +LL E++S+ I ++ Sbjct: 563 KRGLKYCPICGEIENLYSSKKIPFVRIPYAFKLLLDELKSMCILPRIKV 611 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 79/433 (18%), Positives = 145/433 (33%), Gaps = 77/433 (17%) Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 L++ E YV + D+ V + R KGE Q +V Sbjct: 4 LASREVNIYVNGKLVGTTDKPEELVNFIREKRRKGELP---------------QYTTVAY 48 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK--RGGV 723 ++++N + + R P + + E + G + + GV Sbjct: 49 -------NEESNDIHINTDAGRIVRPLIVVENGKPKLTKEHIEKLKKGEITFSDLVKEGV 101 Query: 724 VQYVDASR---IVIKVNEDEMYPGEAGIDIYNLT---------KYTRSN---QNTCINQM 768 ++Y+DA I ++E+E+ ++I LT Y N + T M Sbjct: 102 IEYLDAEEEENAYIALSEEELTEKHTHLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAM 161 Query: 769 PCVSLGEPVERGDVLADG------------------PSTDLGELALGQNMRVAFMPWNGY 810 SLG P+ D + GQN VA M + GY Sbjct: 162 GKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQEILGFDKRPAGQNFVVAIMSYEGY 221 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG------EAALSK 864 N ED+I+ ++ + + + R G + +IP+ G E Sbjct: 222 NMEDAIVFNKSAIDRGLGRSTFFRTYDACERRY-PGGQMDRFEIPDKGVRGYRSEECYRY 280 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 L+E GIV + + V GGD++VGK +P + I + +DSS+ V +G Sbjct: 281 LEEDGIVAVESHVKGGDVIVGKTSPPRFLEE-------HEITIQVKPQRRDSSVVVRHGE 333 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G + V + K + +++++ + + G + + + Sbjct: 334 EGYIDKVILTET------KEGNRLVKVKVRDLRIPELGDKFASRHGQKGVMGLTVPQEDL 387 Query: 985 EAEKLDKLPRDRW 997 + +P Sbjct: 388 PFTESGIVPDIII 400 >UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S5S8_TRIAD Length = 1016 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 92/431 (21%), Positives = 153/431 (35%), Gaps = 78/431 (18%) Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 ++P G + + V + G + + + + + + D I + + Sbjct: 647 KLPAGQNAIIA---VMSYSGYDIEDAVILNKASVDRGPQADAQTGKTIWKHKVLDADGIC 703 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 + VE++++ + Q L+ + Sbjct: 704 MPGEKVESKQILINKSIPSVTSTPIAGTGQKLLQPEYIDMPMTYRGPTDAYVENVMISSN 763 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 D+ ++K L RR + GDK + RHG KGV I EDMP+ D ++ Sbjct: 764 NDE-----AFLIKTLLRSSRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFT------DQIM 812 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP G P + +G + Sbjct: 813 NPHGFP---------------SRMTVGKLM------------------------------ 827 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 EV+ +L G FDG K ++ + L + +G+ L G TG Sbjct: 828 ---------EVIGGKASLLDGKFRYGTAFDGDKLEDLCQTLIDYNYSYAGKDYLTSGITG 878 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E + G +Y +L H+V DKMHAR+ G +++T+QP G+++ GG R GEME L Sbjct: 879 EGLSAYIFFGPVYYQRLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCL 938 Query: 1279 EAYGAAYTLQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLK 1328 AYG + L E L + SD DV K H +P + +L + Sbjct: 939 IAYGTSMLLVERLMISSDAFEVDVCNNCGLLAYSKWCHYCHSSCHVSSLQIPYACKLLFQ 998 Query: 1329 EIRSLGINIEL 1339 E++S+ I L Sbjct: 999 ELQSMNIIPRL 1009 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 106/698 (15%), Positives = 210/698 (30%), Gaps = 115/698 (16%) Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 +E L LS +G R +++ + D++ + Sbjct: 183 ILIQEQLSKNRMILEVDNKGNALSYIGSRVRQRKWGAKKLP---VDEARDLLANVV---- 235 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT-------- 486 + + +DD D+ GN+R+ G++ F + +K Sbjct: 236 LSHIPSILDDKDYYGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNIPKQRAGPVNMN 295 Query: 487 -----LMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEITHKRRISALG---- 534 + I+ + S MD+ ++ +SALG Sbjct: 296 LRFLEFDIVKYMRQDQITNGFNLALTTGNWSIKRYKMDRAGVTQVLSRLSYLSALGMMTR 355 Query: 535 -PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 + R R + P+ +G +CP +TPEG GL+ +L++ + Sbjct: 356 ISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT-DSDDKIIIN 414 Query: 594 VTDGVVTDEIHYLSAIE--EGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSR 647 + + ++I+ LS E + I N + + R Sbjct: 415 LLFNLGVEDINLLSGEELSLPHIYIVYVNGYVLGAARNYKKLIRTFRLLRRD-----IKT 469 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 QV + ++ S+ P + N AL G + R ++++KPLV Sbjct: 470 AQVKRILYLIANYINEFVSIYPNHTYRQINIALDGGRVCR-PYIIVKSEKPLVTIKHIEE 528 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKV---NEDEMYPGEAGIDI------------YN 752 ++ R G+++Y+D + E ++ +DI Sbjct: 529 LSQGIRSFDDFIRNGLIEYLDVNEENDCNIALYESDINSKTTHLDIEPFTILGVCAGLIP 588 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG------------------PSTDLGEL 794 + +S +NT M ++G D + +L Sbjct: 589 FPHHNQSPRNTYQCAMGKQAIGTIGYNQRNRIDTVLYQLVYPQVPLVKTKTIDLIEFDKL 648 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQED----RFTTIHIQELACVSRDTKLGPEEI 850 GQN +A M ++GY+ ED++++++ V T I + Sbjct: 649 PAGQNAIIAVMSYSGYDIEDAVILNKASVDRGPQADAQTGKTIWKHKV------------ 696 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP--EEKLLRAIFGE 908 LD GI G +V IL+ K P + +KLL+ Sbjct: 697 --------------LDADGICMPGEKVESKQILINKSIPSVTSTPIAGTGQKLLQ----- 737 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 + D + V +V + + + + L + + K S Q Sbjct: 738 --PEYIDMPMTYRGPTDAYVENVMISSNNDEAFLIKTLLRSSRRPEIGDKFSSRHGQKGV 795 Query: 969 AGLFSRIRAVLVAGGV--EAEKLDKLPRDRWLELGLTD 1004 GL + + ++ + +E+ Sbjct: 796 CGLIVNQEDMPFTDQIMNPHGFPSRMTVGKLMEVIGGK 833 >UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum RepID=RPC2_DICDI Length = 1608 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 93/426 (21%), Positives = 153/426 (35%), Gaps = 83/426 (19%) Query: 927 TVIDVQVFT--RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 V+ QV + + G + R L+Q K L + I + G ++ +LV Sbjct: 1250 IVLKKQVTSIKKHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYS 1309 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 +D P + Y + ++++ + +T GDD Sbjct: 1310 PLNTIDATPNPELI-----------PDSAYKSSY--MGYKYDNPAFIDKVLLTSGDDE-- 1354 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 ++K+ + RR + GDK + RHG KGV I EDMP+ + G DI+ Sbjct: 1355 --QLLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDII------- 1405 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 + H + IG I Sbjct: 1406 --------MNPHGFPSRMTIGKMI------------------------------------ 1421 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E++ + G F G + I ++L G+ + G TGE Sbjct: 1422 ---ELLAGKAGVLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACF 1478 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + G ++ KL H+V DKMHAR+ G +T+QP G+A+ GG R GEME L YGA+ Sbjct: 1479 IFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGAS 1538 Query: 1285 YTLQEMLTVKSDDVN----------GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 + E L + SD G + +P + +L +E++++ Sbjct: 1539 ALIMERLMISSDRFTVYACKNCGFLGYEGYCQYCKSSVDISTIQIPYACKLLFQELQAMN 1598 Query: 1335 INIELE 1340 I L+ Sbjct: 1599 IVPRLK 1604 Score = 176 bits (445), Expect = 7e-42, Method: Composition-based stats. Identities = 74/469 (15%), Positives = 148/469 (31%), Gaps = 46/469 (9%) Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG--NYVIAQANSNL 623 N GL+ + ++ + E P ++ + +I ++ E N + N + Sbjct: 967 SHNCGLVKNFALMSHVTTDD-SEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQI 1025 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS---VGASLIPFLEHDDANRAL 680 + + VT K + R+ V QQ +S G L + D R Sbjct: 1026 IGIHNSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPR 1085 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDS-----------------------GVTAV 717 + LR + G+ + V+ T + Sbjct: 1086 LTQEHIEDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWREAAIQPWTTHLEIEPFTML 1145 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 G++ Y ++ + M G+ I + TR + + V P+ Sbjct: 1146 GCVAGLIPYPHHNQSPRNTYQCAM--GKQAIGAIAYNQLTRIDTLLYL----LVHTQRPL 1199 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 + + + +L G N VA M ++GY+ ED++++++ + I +++ Sbjct: 1200 CQTRTI---DLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQV 1256 Query: 838 CVSRDTKLG-PEEITADIPN-VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 + + I PN + + LD GI G G ILV K +P Sbjct: 1257 TSIKKHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDA 1316 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955 TP +L+ S K S + + V + + D + + L + + Sbjct: 1317 TPNPELI------PDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPEL 1370 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 K S Q G+ + + + + P + + Sbjct: 1371 GDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGK 1419 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 81/552 (14%), Positives = 173/552 (31%), Gaps = 68/552 (12%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F + + K + + L Y + D + +D + Sbjct: 50 RGLVKQHIDSFNFFINVEMKKIVKANERLTAENDPSYFVRFTDINVGSPTSTEDNLDSVQ 109 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET------------ 250 P LR + Y+ +++ + + I + + +P LR Sbjct: 110 LTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMA 169 Query: 251 ----------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 F + KV + + R I +++ + V K ++ Sbjct: 170 ALGECPMDPGGYFIVRGQEKVILNHEQLSKNRIIIEMDSKGLPSASVTSSTHERK--SRT 227 Query: 301 YIDESTGELICAANME-LSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS------ETLRV 353 + +L N + + L G + + + +++ E + Sbjct: 228 GVTLKNEKLYLKHNTFGEDIPVAIVLKGMGVETDQEMAQLVGSDDVFLNAITPSLEECQK 287 Query: 354 DPTNDRLSALVEIYRMMRPGE-PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 + AL + ++ P + ++ E L+ V ++N Sbjct: 288 CGVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYNFR---- 343 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L + +++++I K +DD D+ GN+RI G++ F + + Sbjct: 344 -------LKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQ 396 Query: 473 RAVKERL-----SLGDLDTLMPQDMINAKPISAAVKEFFGS--SQLSQF-MDQNNPLSEI 524 +K+ + + L +I I+ S L +F M+++ + Sbjct: 397 SELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVL 456 Query: 525 THKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 + IS +G + R R + P+ +G +CP +TPEG L Sbjct: 457 SRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC-----LHPDT 511 Query: 580 QTNEYGFLETPYRKVTDG--VVTDEIHYLSAIEEGNY-----VIAQANSNLDEEGHFVED 632 + P R++ DG ++T + + A Y +Q L + Sbjct: 512 IITMSNGQQKPIRQLKDGDSIITLDPITMEAHSTRIYSHFIKSSSQYGKQLLKITTITGK 571 Query: 633 LVTCRSKGESSL 644 + C + Sbjct: 572 EIICTNDHRFLT 583 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 60/384 (15%), Positives = 112/384 (29%), Gaps = 37/384 (9%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 K + + + P + L+ +DSF FI + + + + + Sbjct: 34 KPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTA-----ENDPSYFV 88 Query: 69 QYVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLV--------------- 103 ++ +G P Q C++R +TYSAP+ V + Sbjct: 89 RFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGN 148 Query: 104 --IYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 I R + K EQ +GE P M G F++ G E+VI++ S Sbjct: 149 IPIMLRSSNCVLSKKTPEQMAALGECP-MDPGGYFIVRGQEKVILNHEQLSKNRIIIEMD 207 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 K S V + R S + +P I+L+ + T+Q + Sbjct: 208 SKGLPSASVTSSTH---ERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGMGVETDQEM 264 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 + +E + A ++ V + + E+ Sbjct: 265 AQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSEEAR 324 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL-LAKLSQSGHKRIETLFTND 340 L V + ++ + +I M L G+KRIE Sbjct: 325 DILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLI 384 Query: 341 LDHGPYISETLRVDPTNDRLSALV 364 + + + A+ Sbjct: 385 SLLFEDCFKKFQSELKKSVDQAIA 408 >UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophyta RepID=A3BQ32_ORYSJ Length = 1257 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 147/1040 (14%), Positives = 307/1040 (29%), Gaps = 210/1040 (20%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGN--------SELQYVSYRL 75 L+S Q++S+ F+ GL+ F S+ + Y + + +++ L Sbjct: 140 LVSHQINSYNDFVSH------GLQKMFDSLDEVTVEPDYDPSKKVGPWRHATIKFGRVEL 193 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 EPVF V C + E + K + Q+ MT + Sbjct: 194 EEPVFWVDNC------------------DLDVETLKLKPKHARLQK--------MTYSSK 227 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 + T +V K +G+ Y + + K+ + Sbjct: 228 MKVEMTVQVYSLH------------KSDKAKTGEDPY-----------IQRKDIMKETKW 264 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 V I KLP + ++ + + ++ + E+ + Sbjct: 265 VTIG---KLPVME------------SECEYDFGGYFLIKGMEKVFVAEEQRCLSRIWIND 309 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + ++ Q+ ++ + + V KV+ ++ + I + Sbjct: 310 SPTWEACYQR---------SQIRREKISIKPVQSNDGFRKVINLYFLGATIPIWIMFFAL 360 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL-----RVDPTNDRLSALVEIYRMM 370 +S D A I + D IS T+ + + A I +++ Sbjct: 361 GVSSDKEAF-------DIIDIQECDASMANIISATITESHEQCEGFQREGRASEYIDKLI 413 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 R + P + + + F + +++ Sbjct: 414 RNTKFPPKGSFDEYIGRHMFP----------------------DVSGNRSKALFLGYMVR 451 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL----VRVERAVKERLSLGDLDT 486 L+ +G + D+ D N+R+ E+ + + V + R+ + ++ LS GD D Sbjct: 452 CLLLASSGNRKSDNRDDFRNKRLDLACELLQRELWVHIMHAQKRMVKVMQRHLS-GDGDL 510 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRRISAL 533 + ++A ++ + F + + + NPL ++ R+ Sbjct: 511 QPLECYVHASIVTNGLNRAFSTGSWCHPFNKRERCSGIVATLRRTNPLQMMSDMRK---- 566 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 + + R +P+++G++C + TP+G G + +L++ A + P Sbjct: 567 TRQWVAYAGKAGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAITAIVS--CLAREPSVD 624 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLD----EEGHFVEDLVTCRSKGESSLFSRDQ 649 ++ L E N NL + FV L + R + + + Sbjct: 625 ALVSCGMKKLDELLLQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRRKQIDAQVEIK 684 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA 709 D ++ S ++ L + R +M + L + G+E Sbjct: 685 RDK-QNKEVRIFSDPGRILRPLLIVENLRNIMNRKNGSYSFQELMDQNIIELIGVEEEED 743 Query: 710 VDSGVTAVAKRGG-------------------------VVQYVDASRIVIKVNEDEMYPG 744 + G ++ + + + + E Sbjct: 744 IRCAYGIRHLFAGDEEKNFSFYTHCELDPSFLLGLSCSIIPFANHDTAKRILMQAEKISQ 803 Query: 745 E--AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS---TDLGELALGQN 799 + L + + Q P G S E GQN Sbjct: 804 QAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSKHDFARPEYFNGQN 863 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG-----PEEITADI 854 V+ G+N EDS++++ ++ F T H + + + ++ E I Sbjct: 864 AIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEITKRLKHKENINFGK 923 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 + + LD G+ YIGA + DI++GKV+ GE Sbjct: 924 TPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGE---------------------- 961 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 D S+++ + G V V + D + + K S Q G Sbjct: 962 DHSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQTRSPRIGDKFASMHGQKGVIGFLDS 1021 Query: 975 IRAVLVAGGVEAEKLDKLPR 994 + P Sbjct: 1022 QENFPFTHQGIVPDIVINPH 1041 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 78/440 (17%), Positives = 134/440 (30%), Gaps = 89/440 (20%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE--AEKLDK 991 F ++ RA M Q K ++ E + + + G +D Sbjct: 874 FNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEITKRLKHKENINFGKTPSKKGLVDS 933 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 L D +G + + + ++++ + +K +K ++ ++ DD Sbjct: 934 LDIDGLPYIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDDGTNSAF-- 991 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V L R R G+K Sbjct: 992 --VTLRQTRSP--------RIGDK------------------------------------ 1005 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 A G K QE + + E Sbjct: 1006 ----------FASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEA 1055 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 G F I E L G + +GRTGE+ PV G Sbjct: 1056 ALGKGIALGGATRYATPFTSPSVEVITEQLHKAGFSRWGGESVINGRTGERAASPVFTGP 1115 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 + +L+H+ +DK+ R+TG +T+QP+ + ++GG +FGEME L A+GAA L E Sbjct: 1116 TFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHE 1175 Query: 1290 MLTVKSD----DVNGRTK-----------------------MYKNIVDGNHQMEPGMPES 1322 L + SD V R + + + +P Sbjct: 1176 RLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGRKVRGPYCRFCRSAEEVVRVSVPYG 1235 Query: 1323 FNVLLKEIRSLGINIELEDE 1342 +L +E+ S+GI ++ + E Sbjct: 1236 AKILYQELFSMGICLKFDTE 1255 >UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RER1_PLAYO Length = 1470 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 103/464 (22%), Positives = 175/464 (37%), Gaps = 48/464 (10%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 V N SGT V + G + + + + + + + ++++ + Sbjct: 1001 YGVDNFPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRTHIYKTEVIDLYKKTNSPD 1060 Query: 978 VLVAGGVEAEKLDKLPR--DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 + V + R + +++ + Q + + L KK E + Sbjct: 1061 FALGNNVRYTINSLPTKNNPREYKGRFLNKDGLPCINQKILENNPLYSYINKKNELTTYE 1120 Query: 1036 I--TQGDDL------APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + T GD + ++ + L R GDK A RHG KGV+S++ P EDMP+ Sbjct: 1121 VFKTHGDYYVDCVSNSQSNNQVAIIRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPF 1180 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 E+G D++ NP G+PSRM IG ++E+ G AA G +I+A ++ K Sbjct: 1181 SESGIVPDVIFNPHGIPSRMTIGMLIESICGKAASIYGKRIDATPFRKYTKQKS---FNN 1237 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + G + ++ + +E ++ + +D K +LL Sbjct: 1238 PWIDGCGAKGFLNKQDENADEKKTTIKSSTENSDTTEISYDE-KIDFFAKLLLNKGYDYY 1296 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G LY G G + + G +Y +L H+ DK R TG +T QPL GK + GG Sbjct: 1297 GTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPVCHLTHQPLKGKKKHGG 1356 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK-------------------- 1303 R GEME L ++G ++ + E + SD V + Sbjct: 1357 IRLGEMERDGLISHGCSFIINERFLMNSDGHECFVCPKCGLILSPILQYNCSGKLMKGRS 1416 Query: 1304 --------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + K+ +P LL E+ L I I L Sbjct: 1417 IGGNSKMAVCKSCNVSCKI--VYVPYVLRYLLNELVCLNITIRL 1458 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 100/802 (12%), Positives = 230/802 (28%), Gaps = 109/802 (13%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI---------QSYSGNSELQYVSYRL 75 +L+ +D F FI + + + + + Sbjct: 87 KFLVQSHIDDFNSFINVYIKNMPETLPVIEFSPNLNKYSCLNYEKKPKERIKFYISDIII 146 Query: 76 GEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 PV C++ TY + V + + +I V G Sbjct: 147 KTPVIKNDNGNTRPNYPYLCKLACSTYEGEVLVVI---------NKQYKNEIVRTTVSTG 197 Query: 126 EIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDK 161 IP+M + G F+++G ++I + +++ Sbjct: 198 FIPIMVLSDLCNLKNLNKKELVQKGEDESILGGFFIVSGHLKIIRYVICPKYNAILLNEE 257 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 K H + + N+ I ++E++ ++ + + + L + + Sbjct: 258 NKVHINCLLSDNSVFINSLSYLNNYEYE-----YLSRFQGSFIRIAFNVLILCLSPIKKK 312 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD- 280 + K+ I++ E + +V+ + + ++ Sbjct: 313 SYIYNKIKLGIKNENAIK--YIENYINSIFLKNDINEKEVFDKYNLKYLGKYANTSRTIF 370 Query: 281 ---DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 D + + V+ + E IC +L +L+K ++L Sbjct: 371 RYYDGNNYKKGKNVVKYCVLPHLQSNSEKFETICLMFKQL---VLSKFKLINTVNKDSLE 427 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRM-MRPGEPPTREAAESLFENLFFSEDRYD 396 + + + + + + +Y + E + + ++ Sbjct: 428 YHSVTTCSGLLSNILKERILSCFYRMQMLYSRSLHRFLEKKYEGFKLNVKQIYLRYKEMI 487 Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 L + FN+ LL D ++ ++L + D N R+ + Sbjct: 488 LHELSEDHFNQILLNNT----------DKLENNEELTSENDNMISK--RDSTKNLRLMFM 535 Query: 457 GE---MAEN---QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 E + N R R E + + + IS+ + S Sbjct: 536 NEKEKLFTNVDGYLREIFSD-SRLFIENTRTFGVASFAISYLFKTGNISSDYIHYQQKSG 594 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 D+ N L +T+ R A+ G ++ R + +G +CP+ TP+G G Sbjct: 595 WVILADEINNLRLLTNFR---AIHRGSFFQDVKVLSPRKLLGESWGFICPVHTPDGSPCG 651 Query: 571 LINSLSVYAQT------NEYGFLETPYR-KVTDGVVTDEIHYLSAIEEGNYVIAQAN--- 620 L+N LS Y + F Y K+ V DE + + E + + Sbjct: 652 LLNHLSQYCCIHNVASNEPHKFNIKMYLKKIGINVNLDETSGIHTVYENQTIPIIVDSVP 711 Query: 621 -SNLDEE--GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV-----GASLIPFLE 672 + + E V L ++ +L S ++ + S+ +I + Sbjct: 712 ITYISENDFKRTVYKLKYAKNHNLYNLKSHFEIIAHLNEQSLMDSITIHTCTGRIIRPIL 771 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV--AVDSGVTAVAKRGGVVQYVDAS 730 + + + V ++ + R + ++ V + Sbjct: 772 NLKMKCIEFISPGYQPYVSIAVNYDDILKNNLARKILKKKENMVNLNSINNTKNTKKMTL 831 Query: 731 RIVIKVNEDEMYPGEAGIDIYN 752 + ++ + E + YN Sbjct: 832 KEQYHFYTNKKHNIEKEAENYN 853 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 64/209 (30%), Gaps = 26/209 (12%) Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI---NQMPCVSLG 774 + + + D ++ + + +M GI +L + Q P V Sbjct: 939 SFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQ--SLNMFYTFTNKIYRIITPQFPLVVTR 996 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + G + G N VA + + GY+ ED++++++ F T + Sbjct: 997 DYEFYG----------VDNFPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRTHIYK 1046 Query: 835 ELACVSRDTKLGPEEITADIP-----------NVGEAALSKLDESGIVYIGAEVTGGDIL 883 P+ + N E L++ G+ I ++ + L Sbjct: 1047 TEVIDLYKKTNSPDFALGNNVRYTINSLPTKNNPREYKGRFLNKDGLPCINQKILENNPL 1106 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASD 912 + K E K + + S+ Sbjct: 1107 YSYINKKNELTTYEVFKTHGDYYVDCVSN 1135 >UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium RepID=B3L5F6_PLAKH Length = 1539 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 104/482 (21%), Positives = 164/482 (34%), Gaps = 59/482 (12%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 + +I+ R I +++ D + + + A Sbjct: 1051 YTGYDMEDALIINKSSAERGIFRTHIYKTIIIDLKKNHGAGDFALGNNVRYTNKNAGTNA 1110 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL-------AEQYDELKHEFEKKLE 1030 A+ K + + D + Q + + +EK E Sbjct: 1111 TSANSTSTAKNNLKFQYEHMGKFLNKDGLPRVQQKMVELNPLYSYVNKASELTVYEKFKE 1170 Query: 1031 AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 + + +I + L R GDK A RHG KGV+S++ P EDMP+ E+ Sbjct: 1171 HGEYYVDCVTNYKSTKNQIGIIRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPFSES 1230 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR-------- 1142 G D++ NP G+PSRM IG ++E+ G AA G +I+A ++ K Sbjct: 1231 GIVPDVIFNPHGIPSRMTIGMLIESICGKAACMYGKRIDATPFRKYTKQKSFNNEWIDNC 1290 Query: 1143 --EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM--PIATPVFDGAKE------ 1192 + G + K S EEV + +K TP + Sbjct: 1291 GVKGFLEQVKQGKNEDGKDSSSHAPGEEVGHSHKGKKKNDIPKGETPKGEKNNITYDEKI 1350 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 +LL G LY G G + + G +Y +L H+ DK R TG Sbjct: 1351 DYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPIC 1410 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK----- 1303 +T QPL GK + GG R GEME L ++G ++ + E + SD V + Sbjct: 1411 NLTHQPLKGKKKHGGIRLGEMERDGLISHGCSFIINERFLINSDGHECFVCPQCGLILSP 1470 Query: 1304 -----------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + K+ +P LL E+ L I I L Sbjct: 1471 IMQFTCSGEMVKGRSIGGRSKVAVCKSCGVSCKI--VYVPYVLRYLLNELICLNITIRLN 1528 Query: 1341 DE 1342 + Sbjct: 1529 IK 1530 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 103/762 (13%), Positives = 220/762 (28%), Gaps = 103/762 (13%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY---------SGNSELQYVSYRL 75 +L+ +D + F+ + I +Y + + + R+ Sbjct: 84 KFLIQSHIDDYNSFVNVYLKNMPENIPVVEFSPKINTYATQNFNSKSTDSIKFYVSDIRI 143 Query: 76 GEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 PV C++ TY + +K+ T +I V G Sbjct: 144 RNPVLKNDKGETRNDYPYLCKLSARTYEGEITLKI---------NRKTNDEIISTTVSAG 194 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLYNARIIPYRG 181 IP+M + ++ + ++ Q G F S K I+ Sbjct: 195 TIPVMVLSNLCNLSSLSKKMLPQKGEDESLLGGFFVISGHLKVIRYVIHPKYNTILLNDE 254 Query: 182 SWLDFE-FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 + + ++++V K + + ++ I+ Sbjct: 255 NKVHMNCLLNDNSVYVNFLSCPKFDFFTYGARYQNSLMVVPLHIILLLLSPIKKKSYLFN 314 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + ++ E A IE + K + + I VA Sbjct: 315 KMKMGIKNENAVKYIEQYIQSIFMKNGLNEKEVFEKYNLKYLGNSSYFRRGIFRYNVA-- 372 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 E G++I + + ++ ++ +TL + I++ + Sbjct: 373 -PGERKGKIILRYAILPHIQSYSEKFETICMMFKTLIFSKFKLMAKINKDSLENHAVTTC 431 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 S L+ + R F E +YD V + Sbjct: 432 SHLLSNLLKEQILTCLGRLVFRYSRNFYKFYEKKYDSFKVMVKQIYLRYKE--------- 482 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM-----------AENQF----R 465 VM +L + ++ D ++ S ++ ++ F Sbjct: 483 ------MVMDELDEKHLNMVPLEGDDSDISKAADSGNQLAMSNKSEAVKKLKSIFMDEKE 536 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF----------- 514 VE ++E + +L + + I ++ + FF + +S Sbjct: 537 KLFSSVESYIQELYNDNNLFVDISKSFIT---LTMPIIFFFKTGNISSENIGYQQRSGWV 593 Query: 515 --MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 D+ N L IT+ R A+ G +E R + +G +CP+ TP+G GL+ Sbjct: 594 IGADEINSLRFITNFR---AIHRGCFFQEVKVLSPRKLLGEAWGFICPVHTPDGSPCGLL 650 Query: 573 NSLSVYAQT-------NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN--- 622 N LS ++ + ++ +K+ V D+ + I E + +S Sbjct: 651 NHLSQFSYVHNSASNESHKLNIKLYLKKIGVNVNLDDTSGIPTIYEDQTIPILVDSVPIT 710 Query: 623 ---LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA 679 + V L ++ +L + +++ + S+ + P R Sbjct: 711 YISEQDFNRVVYKLKYAKNHNLYNLKAYFEINAYLNEPLLMDSIIINTFP----GRLIRP 766 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 L M + A +P V + + + R Sbjct: 767 LFNLKM-KCIEYISPAYQPYVAIAINYEHIKKNNLARKMLRM 807 Score = 95.3 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 47/387 (12%), Positives = 106/387 (27%), Gaps = 68/387 (17%) Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK-YTRSNQNTCINQMPCVSLGEP 776 + G + + D ++ + + +M GI N+ +T Q P V + Sbjct: 971 SFLGSLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMMYTFTNKIYRMITPQYPLVVTRDY 1030 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 G + G N VA + + GY+ ED++++++ + F T + + Sbjct: 1031 ELYG----------VDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGIFRTHIYKTI 1080 Query: 837 ACVSRDT-------------------------KLGPEEITADIPNVGEAALSKLDESGIV 871 + ++ E L++ G+ Sbjct: 1081 IIDLKKNHGAGDFALGNNVRYTNKNAGTNATSANSTSTAKNNLKFQYEHMGKFLNKDGLP 1140 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS--------------- 916 + ++ + L V E + + K + + ++ K + Sbjct: 1141 RVQQKMVELNPLYSYVNKASELTVYEKFKEHGEYYVDCVTNYKSTKNQIGIIRLRTTRPP 1200 Query: 917 ----SLRVPNGVSGTV-----IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI- 966 +G G V + F+ G+ D + Sbjct: 1201 LVGDKFASRHGQKGVVSRLFPHEDMPFSESGIVPDVIFNPHGIPSRMTIGMLIESICGKA 1260 Query: 967 ----LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK 1022 + + R E +D +LE + + + +E+ Sbjct: 1261 ACMYGKRIDATPFRKYTKQKSFNNEWIDNCGVKGFLEQVKQGKNEDGKDSSSHAPGEEVG 1320 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKI 1049 H + K K+ I +G+ I Sbjct: 1321 HSHKGK---KKNDIPKGETPKGEKNNI 1344 >UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae RepID=Q6E6F3_ANTLO Length = 1014 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 95/433 (21%), Positives = 157/433 (36%), Gaps = 76/433 (17%) Query: 919 RVPNGVSGTVIDVQV--FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 ++P G +G V + + + + + + L+ G+ RI Sbjct: 644 KLPAGQNGMVAVMAYAGYDIEDALIINKGALDRGFGRCEVYRSYKHSLKRYSNGMCDRIS 703 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + GV D ++ E+ + EL + K Sbjct: 704 GSKHSDGVRGPGERVFDGDFFVYKESPTEDADFKFS------GELYKNLSPSVVDKVIVA 757 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 G+D +VK L R+ + GDK + RHG KGVI + P D+P+ E+G DI Sbjct: 758 RSGED-----QFMVKTCLRQVRQPEVGDKFSSRHGQKGVIGLVVPETDLPFSEDGQVPDI 812 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP G ++ KI Sbjct: 813 IMNPH----------------GFPSRMTVGKI---------------------------- 828 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 E++ + G VF ++ +L G+ +G Sbjct: 829 ----------IELISGKAAVFTGRQSDATVFREDITEDLSHILIKHGYSYCGKDTFTNGI 878 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TG+ +E V G +Y +L H+V DKMHARS G +++T+QP GK++ GG R GEME Sbjct: 879 TGDVYEGYVFFGPVYYQRLKHMVADKMHARSRGPRAMLTRQPTEGKSREGGLRLGEMERD 938 Query: 1277 ALEAYGAAYTLQEMLTVKSD----DVNGRTKM-----YKNIVDGNHQMEPGMPESFNVLL 1327 L YGA+ L E L + SD + R + + + MP + +L Sbjct: 939 CLIGYGASAILCERLMISSDVFRAYICHRCGIIVYKNMCTLCKRGDPVPVDMPYACKLLF 998 Query: 1328 KEIRSLGINIELE 1340 +E+ S+ I ++ Sbjct: 999 QELMSMNILPRIK 1011 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 115/812 (14%), Positives = 254/812 (31%), Gaps = 99/812 (12%) Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPA--TIILRALNYTTEQILDLFFEKVIF 230 ++P D + + + + RK+ + + + +L EK Sbjct: 3 TIDVLPEECRLRDLTYCGNIYVDIEYTKHRKVIIKKNVFIGKVPIMLRSMLCHLEEKRDD 62 Query: 231 -EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 E P + G F ++ +V + + + R I ++ K V Sbjct: 63 CETVRETYGHRECPLDMGG---YFIVKGVERVILIQEQLSKNRIIADIDNKGCKFTSVTS 119 Query: 290 EYIAGKVVAKDYIDESTGEL--ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 K + + L + ++ +L L I + + Sbjct: 120 STHDKKSKTSIILKKRLLYLKNNVFTDSVPAVIVLKALGMVSDCEIAEFVGQEGALLEML 179 Query: 348 SETLR---VDPTNDRLSALVEIYRMMRPG-EPPTREAAESLFENLFFSEDRYDLSAVGRM 403 +L + +L AL I ++ RP + A ++ + D + R Sbjct: 180 EPSLEHALQTGVHTQLQALDFISKLTRPRQNVSRIDEARTILYEVVLPNIPNDGIDMRR- 238 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 + +++ L+ +DDID LGN+R G + Sbjct: 239 -----------------KAITVAIMIRVLLQAELNMISMDDIDFLGNKRFELAGNLLSIL 281 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDM-------INAKPISAAVKEFFGSSQLS--QF 514 F +R +K+ + + QD+ + IS + + + +F Sbjct: 282 FEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLNLQVNLISNSFVRAISTGNWTVRRF 341 Query: 515 -MDQNNPLSEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 M++ ++ I+ +G + R R +H + +G +CP +TPEG + Sbjct: 342 RMERAGVTQVLSRLSYIAMIGSMAKIQSQFEKTRKISGPRSLHTSSWGMLCPADTPEGES 401 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE--GNYVIAQANSNLD-- 624 GL+ +L++ A+ ++ ++ + + S I+ + + N + Sbjct: 402 CGLVKNLAILAEITT-DVPQSDVEQLLFQLGVRDFRTCSGIDFYSKHSYLIFLNGTIVGI 460 Query: 625 --EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 V V R +G S F + + T + + G + L + R ++ Sbjct: 461 CYNNNTLVRKFVEMRRRGVVSQFVSVYKND-EKRTISIATDGGRICRPLIIVENGRQMLE 519 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSG-----------------------VTAVAK 719 + L G + V+ + + Sbjct: 520 HEDLELLRRRYKNPDDLFKEGKVEFLDVNEENNTKIALRESNICRSTTHLEICEYSILGC 579 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 G++ Y ++ + M G+ + L +Y R + + V +P+ Sbjct: 580 VAGLIPYPHHNQSPRNTYQCAM--GKQAMGFVALNQYRRFDTLLNL----LVYPQKPLVS 633 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 + + +L GQN VA M + GY+ ED++++++ + + Sbjct: 634 TKI---TDIVNFEKLPAGQNGMVAVMAYAGYDIEDALIINKGALDRGFGRCEVYRSYKHS 690 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 + G + + + G+ G V GD V K +P + Sbjct: 691 LKRYSNGMCDRISGSKH----------SDGVRGPGERVFDGDFFVYKESPTEDADFKFSG 740 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 +L + + + V D + +G ++ Sbjct: 741 ELYKNL----SPSVVDKVIVARSGEDQFMVKT 768 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 112/698 (16%), Positives = 228/698 (32%), Gaps = 128/698 (18%) Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN-------- 133 +EC++R +TY + V + + + I ++ V++G++P+M + Sbjct: 8 PEECRLRDLTYCGNIYVDIEYTKHRKV--------IIKKNVFIGKVPIMLRSMLCHLEEK 59 Query: 134 ---------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 G F++ G ERVI+ Q S K V Sbjct: 60 RDDCETVRETYGHRECPLDMGGYFIVKGVERVILIQEQLSKNRIIADIDNKGCKFTSVTS 119 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPATIILRALNYTTEQILDLFFEKVIFE 231 + + S K L+++ + +PA I+L+AL ++ + F + Sbjct: 120 STHDKKSKTS----IILKKRLLYLKNNVFTDSVPAVIVLKALGMVSDCEIAEFVGQ---- 171 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 +E++ L + + +++ ++++ L EV + Sbjct: 172 ---EGALLEMLEPSLEHALQTGVHTQLQALDFISKLTRPRQNVSRIDEARTILYEVVLPN 228 Query: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 I D ID + A + + L A+L+ I+ L + + L Sbjct: 229 IPN-----DGIDMRRKAITVAI--MIRVLLQAELNMISMDDIDFLGNKRFELAGNLLSIL 281 Query: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE--DRYDLSAVGRMKFNRSL 409 D S L + + T++ F NL + + + + R Sbjct: 282 FEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLNLQVNLISNSFVRAISTGNWTVRRF 341 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV--GEMAENQFRVG 467 E + +LS+ I ++ + I++ + G R + + G + G Sbjct: 342 RMERAGVTQVLSRLSYIAMIGSMAKIQSQFEKT--RKISGPRSLHTSSWGMLCPADTPEG 399 Query: 468 LVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI--- 524 VK L ++ T +PQ + V++F S + F +++ L + Sbjct: 400 --ESCGLVKNLAILAEITTDVPQSDVEQLLFQLGVRDFRTCSGI-DFYSKHSYLIFLNGT 456 Query: 525 ---------THKRRISALGPGGLTRE----RAGFEVRDVH-PTHYGRVCPIETPEGPNIG 570 T R+ + G+ + E R + T GR+C + Sbjct: 457 IVGICYNNNTLVRKFVEMRRRGVVSQFVSVYKNDEKRTISIATDGGRIC-------RPLI 509 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV 630 ++ + + + L Y+ D ++ +L EE N IA + Sbjct: 510 IVENGRQMLEHEDLELLRRRYKNPDDLFKEGKVEFLDVNEENNTKIA------------L 557 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + CRS ++++ ++ A LIP+ H+ + R M +QA+ Sbjct: 558 RESNICRST-----------THLEICEYSILGCVAGLIPYPHHNQSPRNTYQCAMGKQAM 606 Query: 691 ----------------PTLRADKPLVGTGMERAVAVDS 712 + KPLV T + V + Sbjct: 607 GFVALNQYRRFDTLLNLLVYPQKPLVSTKITDIVNFEK 644 >UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E3T5_TRIVA Length = 1142 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 94/454 (20%), Positives = 161/454 (35%), Gaps = 74/454 (16%) Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 + ++ S ++ + ++ +E + + + LS+ +L+ Sbjct: 741 QTRTIRLSRYHEMPCGQNAMVAIMSYSGHDIEDALLMNKASLDRGFGRRYYLSKLDLMLK 800 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL--GLTDEEKQNQLEQLAEQYDELKHEFE 1026 I + E + P+ L+ + E+ + A +Y L E Sbjct: 801 NYQGGVIGDRIAPLDRERPENIASPQYSLLDADGIIRPGERIEKGMIYANKYVPLNFEES 860 Query: 1027 K--------KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 + I +++K+ A RR + GDK + RHG KGVI Sbjct: 861 PVKFMAQPARYNYYPVMIQNVSVYTTETTQVIKIKTADFRRPELGDKFSSRHGQKGVIGL 920 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I P EDMPY E+G D+++NP G ++ K+ Sbjct: 921 IVPQEDMPYTEDGICPDMIMNPH----------------GFPSRMTVGKM---------- 954 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 E++ + G F + +I + Sbjct: 955 ----------------------------IELVSGKVGILTGRIGNGTAFSSDRVKDIADD 986 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L SG+ L G TGE + G ++ L H+V DKM AR+TG +T+QP Sbjct: 987 LIAAGYSYSGKDMLMSGITGEPLYAYIFFGPVFYQSLKHMVKDKMQARATGQVQYLTRQP 1046 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRT------KMYKNI 1308 G+++ GG R GEME L YGAA L E + + SD +V + + Sbjct: 1047 TQGRSRQGGMRLGEMERDCLIGYGAASILYERMLISSDVYEANVCAKCGFIGYEGYCTHC 1106 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + MP + +L E+ ++GI ++ E Sbjct: 1107 KTKEYMKIVRMPYACKLLFYELMAMGIAPKVRLE 1140 Score = 259 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 143/1003 (14%), Positives = 301/1003 (30%), Gaps = 162/1003 (16%) Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 +M N + + RV + R ++ D K + + Y G+ L ++ Sbjct: 62 IMNANKEVIFSENPRVYI----RYKNIYVDRPKIRNQILTPQMCRLSDETYSGNVL-VDY 116 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 D + V K + L + + E Sbjct: 117 DFVNGSTV------KSFNNQCIAKLPIMLQSNRCYLYNASDETFAK-------YDECRYD 163 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 F I +V + + R + + + K V K + + T Sbjct: 164 PGGYFVINGTERVVHVQEQSPYNRILIEHLANGNKTAVVNSSTSTHKTRVELIWKKDTLA 223 Query: 309 L--ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR---VDPTNDRLSAL 363 L + L + + + + L G + +L+ + + A+ Sbjct: 224 LHHNALSEDIPIFVLFRAMGVTSDQEVIQLVDPTGAVGHLLMSSLQEIIKLEISTQDQAI 283 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI--EGSGILS 421 I R ++ +A GR +L Sbjct: 284 QLIERRLKFLTITGIDATREERNMK---------GYKGREFLRSMVLPHIPSTLTDFRRK 334 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 + + + L+ +D D GN+R+ GE+ E F ++++ +S Sbjct: 335 SVFVGFMTRWLLLSAIDPRMIDGRDFFGNKRLELAGELLELLFEDLFKTFNASMQKTVSR 394 Query: 482 --GDLDTLMPQDM---INAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEI 524 + P ++ ++++ I+ +K S SQ + + + L + Sbjct: 395 TINKSKGIDPSNIAQAMHSETITHGLKYAISSGNWNITRFKMMRAGVSQLLGRMSYLQFV 454 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 + RIS+ + + R ++P+ +G +CP +TPEG GLI + ++ + Sbjct: 455 SMVTRISSH----FEKTQKVAGARLLYPSQFGFICPSDTPEGAQCGLIKNFALTVHVTVW 510 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS----------------------- 621 P R+ + +E+ S E N I N Sbjct: 511 ADP-APARRTLLDLGVEELVVFSGEEISNNYIVMLNGEPIGIIDDPYSICRRFRQVRRRH 569 Query: 622 ------------------NLDEEGHFVEDLVTCR-SKGESSLFSRDQVDYMDVSTQQVVS 662 E G L+ K + + DQV+ +++ ++ Sbjct: 570 WVDKFAAIWIVEAKKCINVSTEAGRVCRPLIIVEDHKSKLTQELMDQVNRGEINFDYLLD 629 Query: 663 VGASLIPFLEHDDANRALMGAN-----MQRQAV----PTLRADKPLVGTGMERAVAVDSG 713 G +I +++ ++ L+ N +R+ P + + T +E A G Sbjct: 630 NG--IIEYVDVNEMTDCLIAFNDKDIEEERKNCVNDPPLAKGELRY-FTHLEIHNAQMLG 686 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 V GVV ++ + M G+ I L R +++T N P + Sbjct: 687 VC-----AGVVPCPHHNQSPRNTYQCAM--GKQAIGPTALNIMHRVDKSTYFNCYPQQPM 739 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 V+ + + E+ GQN VA M ++G++ ED++L+++ + ++ Sbjct: 740 ---VQTRTIR----LSRYHEMPCGQNAMVAIMSYSGHDIEDALLMNKASLDRGFGRRYYL 792 Query: 834 QELACVSRDTKLG-----PEEITADIP-NVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 +L + ++ + G + + P N+ S LD GI+ G + G I K Sbjct: 793 SKLDLMLKNYQGGVIGDRIAPLDRERPENIASPQYSLLDADGIIRPGERIEKGMIYANKY 852 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 P + + A + +++ S+ I F R + + Sbjct: 853 VPLNFEESPVKFMAQPARYNYYPVMIQNVSVYTTETTQVIKIKTADFRRPELGDKFSS-- 910 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 G I ++ + + + D Sbjct: 911 --------------------RHGQKGVIGLIVPQEDMPYTE----------DGICPDMIM 940 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 ++ K+ +I G + +K + Sbjct: 941 NPHGFPSRMTVGKMIELVSGKVGILTGRIGNGTAFSSDRVKDI 983 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 56/356 (15%), Positives = 104/356 (29%), Gaps = 52/356 (14%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP-IQSYSGNSELQYVSY 73 + P +L L+ +QL+SF FIE GL + I S + ++Y + Sbjct: 31 WNLIPLILKSTGLIKLQLNSFNDFIES------GLTKIMNANKEVIFSENPRVYIRYKNI 84 Query: 74 RLGEPVF-----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 + P Q C++ TYS + V V + ++P Sbjct: 85 YVDRPKIRNQILTPQMCRLSDETYSGNVLVDYDFVNGSTVKSFNNQ--------CIAKLP 136 Query: 129 LMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M G FVINGTERV+ Q Sbjct: 137 IMLQSNRCYLYNASDETFAKYDECRYDPGGYFVINGTERVVHVQEQSPYNRILIEH---L 193 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 + K + ++ + +P ++ RA+ T++Q Sbjct: 194 ANGNKTAVVNSSTSTHKTRVELIWKKDTLALHHNALSEDIPIFVLFRAMGVTSDQ---EV 250 Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + V L M + E ++ E ++ D + + + +T I ++ Sbjct: 251 IQLVDPTGAVGHLLMSSLQEIIKLEISTQDQAIQ--LIERRLKFLTITGIDATREERNMK 308 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 E++ V+ + ++ LL F N Sbjct: 309 GYKGREFLRSMVLPHIPSTLTDFRRKSVFVGFMTRWLLLSAIDPRMIDGRDFFGNK 364 >UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenophorea RepID=Q23G41_TETTH Length = 1226 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 144/897 (16%), Positives = 280/897 (31%), Gaps = 128/897 (14%) Query: 203 KLPATIILRALNYTTEQIL------DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 KLP + + E + + F++ + I ++ + ER+ + Sbjct: 183 KLPVMVQSMYCSLAGENLEGRIKHGECQFDQGGYFIIKGSEKVIIAQERMAFNFVYVFQQ 242 Query: 257 AN----GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY--IDESTGELI 310 + + R T + Y K++ +D Sbjct: 243 KDPKMPWIAEIRSIRDKTNAVQSKFALKLKLRDGEYQLYARCKLINEDIPIFVLLKALGC 302 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 ++ E+ + L ++++ + + L L N++ AL+ I Sbjct: 303 VESDKEMMERIFYNLKDPKNEQMMEMLRSSL---------LLAQHCNNKREALIFIG--Y 351 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 R ++ ++ + Y L +G E I +++ Sbjct: 352 RINATTNYRGSQEAMQSAEDTLKLYLLPHIGTQ-----------ESDNDKKLFFIGYMIQ 400 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--------G 482 KL++ GK + DD DH G +R+ G + F+ L ++ K+ L Sbjct: 401 KLLNAALGKTQEDDRDHYGKKRLDMAGALISQLFKERLRIFQKNAKKNLQQKINDISRDA 460 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD--------------QNNPLSEITHKR 528 + D+ + K IS ++ + Q D + + ++H R Sbjct: 461 QKSLNVIVDIFDHKLISDHIRLALATGNWGQTADGEVVKTGVAQVLKRDTSLFATMSHMR 520 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN------ 582 R++A + R +H THYG +CP ETPEG IG++ +LS+ AQ + Sbjct: 521 RVNA----PMKSAAKLARPRQLHNTHYGLICPAETPEGQKIGMVKNLSLLAQVSLGLSSQ 576 Query: 583 -----EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 + E + + ++I Y + + I + ++ R Sbjct: 577 DNLKIQEQLEEQINQFDILNLKLEKIPYQTKVFFNGNWIGFTETP----EQIIDVFKEIR 632 Query: 638 SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD- 696 + FS D ++ + G + P + + + + + Sbjct: 633 RLQKIDGFSIV-RDIINKEIRIYTDQGRGMRPVFTVQEICEGKNRLKITKSKLYAILQQF 691 Query: 697 -----KPLVGTGMERAVAVDS--GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 + L+ G + V+ G D R + E++P Sbjct: 692 EGKAFQKLIDEGFIELLDVEEEEGALIAVDINDFYHTDDPRRTNLPFTHCEIHPAMILGV 751 Query: 750 IYNLTKYTRSNQ---NTCINQMPCVSLGEPVERGDVLADGPS------------------ 788 ++ + NQ NT + M ++G + D Sbjct: 752 CASVIPFGHHNQGPRNTLQSAMGKQAMGLNSTNFHMRLDTLCHILYYPQIALASSKSLQY 811 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 ++ +G N VA + GYN EDSI++++ + F +I + + +G Sbjct: 812 ITAKDIPIGSNAVVAIACFTGYNQEDSIIINQSAIDRGLFRSILYRTYKTTEKKEHMGLN 871 Query: 849 EITADIPNVGE--------AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + I E + KLD GI+ G +VTG D+L+GKV +T+ + Sbjct: 872 PVIEHIRFPDEKKTIIPASYSFLKLDYDGIIPPGTQVTGEDVLIGKVVELPKTEGS---- 927 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 KD SL G V V + + + K Sbjct: 928 ---------DKQYKDVSLGCRRSEIGYVDTVILSEDKDGMYIVKVKLRSNRIPQIGDKFA 978 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT--DEEKQNQLEQLA 1015 S Q G+ R + +L P + + E ++L L Sbjct: 979 SRHGQKGTCGMTIRGEDLPYNIEGIIAELVINPHCIPSRMTIGHMIEGLNSKLSSLK 1035 Score = 274 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 91/437 (20%), Positives = 153/437 (35%), Gaps = 78/437 (17%) Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 D + + +++ + KK+ ++E F + ++ KL Sbjct: 837 DSIIINQSAIDRGLFRSILYRTYKTTEKKEHMGLNPVIEHIRFPDEKKTIIPASYSFLKL 896 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK- 1048 D ++ ++ +L + K + L +R +I D + K Sbjct: 897 DYDGIIPPGTQVTGEDVLIGKVVELPKTEGSDKQYKDVSLGCRRSEIGYVDTVILSEDKD 956 Query: 1049 ---IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 IVKV L R Q GDK A RHG KG ED+PY+ G ++V+NP Sbjct: 957 GMYIVKVKLRSNRIPQIGDKFASRHGQKGTCGMTIRGEDLPYNIEGIIAELVINP----- 1011 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 H + IG I + + Sbjct: 1012 ----------HCIPSRMTIGHMIEGLNSKLSS---------------------------- 1033 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 KG+ F G K +I L G LY+ TG + + Sbjct: 1034 -----------LKGIWGDATPFSGIKLQDIASELHTYGYQRYGNEVLYNPYTGMRLSTQI 1082 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G + +L HLVDDKM++RS G + +QP G+++ GG RFGEME + A+G + Sbjct: 1083 YYGPTFYQRLRHLVDDKMYSRSRGPVVAIVRQPTHGRSRGGGLRFGEMERDCIIAHGTSN 1142 Query: 1286 TLQEMLTVKSD----DVNGRTKM------------YKNIVDGN----HQMEPGMPESFNV 1325 L+E SD V R + G+ ++ +P + Sbjct: 1143 FLKERTFGVSDQFRTHVCSRCGLFAKADVTNHKYDCTGCSQGDKKHYKIVQVYLPYAAKQ 1202 Query: 1326 LLKEIRSLGINIELEDE 1342 L++E+ ++ I ++ + Sbjct: 1203 LIQELMAMHIVPRIKVD 1219 >UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=B9FCT0_ORYSJ Length = 1185 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 156/1019 (15%), Positives = 312/1019 (30%), Gaps = 224/1019 (21%) Query: 6 TEKKRIRKDFGKRPQVLDVP-----------------YLLSIQLDSFQKFIEQDPEGQYG 48 + K R + + P + +P L+S Q++S+ +F+ G Sbjct: 62 DDGKGKRDSYAQIPVDMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSH------G 115 Query: 49 LEAAFRS-----VFPIQSYSGN-------SELQYVSYRLGEPVFDVQECQIRGVTYSAPL 96 L+ F S V P S + +++ +L EPVF C Sbjct: 116 LQELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSHGC----------- 164 Query: 97 RVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVF 156 + E ++K + MT + + +V Sbjct: 165 -----------DIDEQSLKLKPRH----ARLQNMTYSSKMKVEVHFQVYSM--------- 200 Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT 216 + + K Y II + ++ I R LP ++ Sbjct: 201 -EKSDKAKTGNDKFGYKRNII-------------NETYYINIGR---LPVMVMSNLCWLH 243 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 + D F+ + + ++ + E+ + V R +I+ Sbjct: 244 KLKESDCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKL 303 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 ++ + + D S G++I + + ++ + G + + Sbjct: 304 IDSANNE-------------------DASGGKIISISFLYANMPIWLMFFALGISSDKDI 344 Query: 337 F--TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDR 394 F N D + T+ T L E +R R+ + L +N F Sbjct: 345 FDVINMEDCDACVINTI--TATIKESDELCEGFRKSDK----ARQYVDELIKNSKFPPAE 398 Query: 395 YDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIR 454 + + F + ++K L+ GK + D+ D N+R+ Sbjct: 399 PFDDYIAKYLFPSISGNRN-------KALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLD 451 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSL---GDLDTLMPQDMINAKPISAAVKEFFGSSQL 511 GE+ + R + ER + + L + + ++A I+ + F + Sbjct: 452 LAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSW 511 Query: 512 SQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + + NPL I+ R+ + + R +P+++G++ Sbjct: 512 CHPYKRNERCAGIVATLRRTNPLQMISDLRK----TRQRVAYAGKAGDARYPNPSYWGKL 567 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 C + TP+G N GL+ +L+V A + R ++ G +++H + E Sbjct: 568 CFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCG--MNKLHEIPTEEVPRMDKIF 625 Query: 619 ANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 N + + FV L R G + D +V S ++ L Sbjct: 626 LNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQ-REVRVFSDAGRILRPLLVV 684 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG--VVQYVDASRI 732 + + + L + + G+E + S V ++ Sbjct: 685 ENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKA 744 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG------ 786 N + G GE ++AD Sbjct: 745 EDVFN----VKRKIG--------------------------GEVSGYTHLIADCIGRSEY 774 Query: 787 -----PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 E GQN VA G+N EDS++++ ++ F T H + Sbjct: 775 TFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEV- 833 Query: 842 DTKLGP---------EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 + K GP ++I + LD+ G+ Y+GA + GDI++GKV+ GE Sbjct: 834 ENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGE 893 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 D S+++ + G V + + + K+ + + ++ Sbjct: 894 ----------------------DHSIKLKHTEKGMV-QRVLLSANDEGKNFAVVTLRQV 929 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 95/492 (19%), Positives = 168/492 (34%), Gaps = 94/492 (19%) Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDV-KDSSLRVPNGVSGT-----VIDVQVFTRDGVE 940 V K +++ L+ G + P +G V Q F ++ Sbjct: 750 VKRKIGGEVSGYTHLIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSL 809 Query: 941 KDKRALEIEEMQLKQAKKDLSEE---LQILEAGLFSRIRAVLVAGGVE--AEKLDKLPRD 995 RA M + ++ E +++ + G ++ ++D L D Sbjct: 810 VMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDD 869 Query: 996 RWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 +G + + + +++E + +K + +K +R ++ D+ V Sbjct: 870 GLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDE----GKNFAVVT 925 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L R GDK + HG KGV+ + E+ P+ G DIV+NP P+R GQ+L Sbjct: 926 LRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLL 985 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 E LG G A + + + +A Sbjct: 986 EAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWG------------------- 1026 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 A V +G + L + +G + Sbjct: 1027 ---------AESVLNGRTGERMHSL--------------------------IFMGPTFYQ 1051 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GAA L E L + Sbjct: 1052 RLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFM 1111 Query: 1294 KSD----DVNGRTK-------------------MYKNIVDGNHQMEPGMPESFNVLLKEI 1330 SD V + + + +P +L +E+ Sbjct: 1112 LSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQEL 1171 Query: 1331 RSLGINIELEDE 1342 S+GI + E E Sbjct: 1172 FSMGICLRFETE 1183 >UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lunularia cruciata RepID=Q1L6W1_9MARC Length = 789 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 93/471 (19%), Positives = 159/471 (33%), Gaps = 90/471 (19%) Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL 964 IF + + V + N ++D G+ + + + + + Sbjct: 374 IFSGQNAIVAIACYTGYNQEDSIIMDQSAL-DRGMFRTQHYRTFKSEERSDHETFGKPSA 432 Query: 965 QILEAGLFS-RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 G + R +L G+ + D + +T +K Q A D Sbjct: 433 ADDSGGPRAMRSDQILEDDGLPYIGCNLGMNDVIVGKIVTHSQKNTQSADSARLVDTSTR 492 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 + + I D+ KI KV L R Q GDK + HG KG++ + E Sbjct: 493 LKAHEKGRVEQVILVQDEEGK---KIAKVKLRETRIPQVGDKFSRMHGQKGIVGMVFTQE 549 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 D+P+ G DI++N H + + +G + L + Sbjct: 550 DLPFTNEGIVPDIIIN---------------PHAFPSRQTLGQMCESALGK--------- 585 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 A R ATP + I E L Sbjct: 586 -----------------------------AIAKRGEQLFATPFNPASTVESITEALHESG 616 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G +Y+G TG+ + +G + +L H+V+DK+ RS G +T+QP+ + Sbjct: 617 YNGWGMETMYNGYTGKAMVAKIFIGSTFYQRLTHMVEDKIKYRSRGHVHPLTRQPVSDRK 676 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK---------------MYKNI 1308 + GG +FGEME L A+GAA TLQE SD + Sbjct: 677 RHGGVKFGEMERDCLIAHGAAATLQERTFHLSDYHEIHICRSCKQMAHMGIDRIPTCRFC 736 Query: 1309 V-----------------DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ +P + +L++E++S+GI++ L+ E Sbjct: 737 KEKNKKVVKGKKTDKTETKVEEIVKVEIPYACKLLIQELQSMGISVGLDTE 787 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 86/580 (14%), Positives = 195/580 (33%), Gaps = 76/580 (13%) Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFF------GSSQLSQFMDQNNPLS 522 R+++ + + L +D + +I ++ + +S + + ++NP+S Sbjct: 10 KRLQKHLSKNQELSSIDKYVEDKVITRGFRNSFSSGNWMGHDLMKNSGIVFDLKRSNPIS 69 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 + R + P + + G + R + +GRVCPI+TP+G GL+ ++++ + Sbjct: 70 TLCQLRELRQYVPPTV---KVGEDARHPTFSQWGRVCPIDTPDGEACGLVKNMALTGIVS 126 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH------FVEDLVTC 636 G E P + + +++ G + N ++ L Sbjct: 127 SAG-TEAPVIDFLESNGMIPLESVTSDTLGMVMKVFVNGRWLGVVKHTHFEPIIKGLRAL 185 Query: 637 RSKGESSLFSRDQVDYMDVS-TQQVVSVGASLIPFLEHDDANRALMGAN----------- 684 R + ++ + +V + QV + ++ L N+ + + Sbjct: 186 RKRPPTAELYQMEVVIIRPKFEIQVSTDSGRVLRPLLVVRHNKMNLNQDSVTQYISEKRG 245 Query: 685 ---------MQRQAVPTLRADKPLVGT------------------GMERAVAVDSGVTAV 717 +Q+ + L ++ +E + A + Sbjct: 246 LPHERFTWFLQKHVIELLGVEEEEKALIALHGADLEKANGLQSRKTVEFSHAEIHPSLIL 305 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 V+ + ++ + + + I +Y R++ + P V + Sbjct: 306 GLSASVIPFPHRNQSSRNLFQ-AHKHSKQAIGVYVTNLACRADTSGQHLFYPQVQ----L 360 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 + +++ E+ GQN VA + GYN EDSI++ + + F T H + Sbjct: 361 VKTNIVN---CLQKDEIFSGQNAIVAIACYTGYNQEDSIIMDQSALDRGMFRTQHYRTFK 417 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSK---LDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 R + +A + G A+ L++ G+ YIG + D++VGK+ + Sbjct: 418 SEERSDHETFGKPSAADDSGGPRAMRSDQILEDDGLPYIGCNLGMNDVIVGKIVTHSQ-- 475 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 + ++ + D+S R+ G V V + + +K + E + Sbjct: 476 --------KNTQSADSARLVDTSTRLKAHEKGRVEQVILVQDEEGKKIAKVKLRETRIPQ 527 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 K Q G+ + + P Sbjct: 528 VGDKFSRMHGQKGIVGMVFTQEDLPFTNEGIVPDIIINPH 567 >UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=Euryarchaeota RepID=RPOB1_METVS Length = 611 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 104/462 (22%), Positives = 169/462 (36%), Gaps = 102/462 (22%) Query: 917 SLRVPNGVSGTVID---------VQVFTRDGVEKDKRA-----LEIEEMQLKQAKKDLSE 962 S N VI+ F R +KR + E + E Sbjct: 213 SYEGYNMEDAFVINKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEE 272 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK 1022 + L + + + +G V K E+ L + Q + + ++ E Sbjct: 273 AYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQEITLQTKS-QRRDTSVTIRHGEEG 331 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 + + ++ ++ KV + R + GDK A RHG KGVI + P Sbjct: 332 -VVDLVILSE----------TKEGNRLGKVRVRDLRVPEFGDKFASRHGQKGVIGLVVPQ 380 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 ED+P+ E+G D+++NP H + IG + + + + R Sbjct: 381 EDLPFTEDGVIPDLIINP---------------HAIPSRMTIGQVLEMIGGKVGSLECRR 425 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 + +F G E ++ L+ Sbjct: 426 ---------------------------------------VDGTIFSGEGEWALRHALENY 446 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 SG+ +YDG+TG + E + VG Y KL+HLV K+HARS G ++T+QP G+ Sbjct: 447 GFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGR 506 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN--------------- 1307 A+ GG RFGEME L A+GAA L+E L +SD Sbjct: 507 AREGGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCP 566 Query: 1308 -------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 I D + +F +LL E++S+GI+ +L+ + Sbjct: 567 VCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLKLK 608 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 68/418 (16%), Positives = 138/418 (33%), Gaps = 54/418 (12%) Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL---EHDDANRALMGANMQ 686 +E G+ S+D + V + ++ L P ++++N + + Sbjct: 1 MEKQANVYVNGKLIDTSKDPENL--VKSLRIQRRSGKLSPNTSISFNEESNDIHISTDGG 58 Query: 687 RQAVPTLRADKPLVGTGME--RAVAVDSGVTAVAKRGGVVQYVDASRIV---IKVNEDEM 741 R P + + E V + + GV++++DA I + DE+ Sbjct: 59 RAVRPLVVVENGFSKLTNELLEKVNNNELTFEYLVKTGVIEFLDAEEEENARIAMYNDEI 118 Query: 742 YPGEAGIDIYNL------------TKYTRSNQNTCINQMPCVSLGEPVERGDVLADG--- 786 ++I L ++ + + T M SLG P+ D Sbjct: 119 TFENTHVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGH 178 Query: 787 ---------------PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 + GQN VA M + GYN ED+ ++++ ++ + Sbjct: 179 LLHYPQVPLVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRST 238 Query: 832 HIQELACVSRDTKLGPEEITADIPNVG------EAALSKLDESGIVYIGAEVTGGDILVG 885 + + G + ++P G E A L + G++ + +EV GD+++G Sbjct: 239 FFRSYESFEKRYPGGQLD-KFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVILG 297 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 K +P + + I + S +D+S+ + +G G V V + + + Sbjct: 298 KTSPPRFLEE-------QEITLQTKSQRRDTSVTIRHGEEGVVDLVILSETKEGNRLGKV 350 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + K S Q GL + L P + + Sbjct: 351 RVRDLRVPEFGDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIG 408 >UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7F6Y6_SCLS1 Length = 1165 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 95/498 (19%), Positives = 160/498 (32%), Gaps = 115/498 (23%) Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGT-VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 L +G +S+ +G + D + + E+ I + + + ++ Sbjct: 717 LHNDYGFDNFPNGMNSVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKYELEEGH 776 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 A ++ G V+AE + D +G + DE Sbjct: 777 KSR----SARNIKKLFGFAPGGLVKAEWKAAIDEDGLPFIGRMVQNGDLIAAWHTVSMDE 832 Query: 1021 LKHEF------------EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 E ++ G++ + + V L + R GDK + Sbjct: 833 NGKYVNRDGQTHFEKYKETEIAFIEEVRLIGNENGIEPCQAISVKLRIPRSPVIGDKFSS 892 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KGV S+ P DMP+ E+G D ++NP PSR IG + Sbjct: 893 RHGQKGVCSQKWPAVDMPFTESGIQPDTIINPHAFPSR---------------MTIGMFV 937 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 ++ + GA D + F +E + Sbjct: 938 ESLAGKA----------------GALHGLAQDSTPFKFDEEHKAG--------------- 966 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 L G +Y G TGE+ + +G +Y +L H+V+DK R+T Sbjct: 967 ----DYFGHQLMKAGYNYYGNEPMYSGITGEELHADIYIGVVYYQRLRHMVNDKYQVRTT 1022 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG-------- 1300 G + +T QP+ G+ + GG R GEME +L A+G A+ LQ+ L SD Sbjct: 1023 GPVTQLTGQPIKGRKKGGGIRVGEMERDSLLAHGTAFLLQDRLLNCSDYTKSWICKECGT 1082 Query: 1301 ---------------------RTKMY-------------------KNIVDGNHQMEPGMP 1320 R + + V G +P Sbjct: 1083 FLSTQPTVSAFASKKKGTGVVRCRKCATRAEGKFGGGEVWEDGKGQRWVGGEDTTVVAVP 1142 Query: 1321 ESFNVLLKEIRSLGINIE 1338 L E+ ++GI ++ Sbjct: 1143 GVLKYLDVELAAMGIKLK 1160 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 108/801 (13%), Positives = 223/801 (27%), Gaps = 160/801 (19%) Query: 158 DSDKGKTHSSGKVLYNARIIPYRG---SWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 + K R + YRG + +++ + D D + LP ++ + Sbjct: 107 NKFSTKNREILPAECRERHVTYRGKMSARMEYSINNGDPKEFIRDLGQ-LPLMLMSNKCH 165 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQ---MELVPERLRGETASFDIEANGKVYVEKGRRITA 271 L K E +E + L +F + + +G T Sbjct: 166 LQNNSPAQLVQNKEESEELGGYFVVNGIEKIIRLLVVNRRNFPMAIIRPSFKGRGPAYTE 225 Query: 272 -----RHIRQLEKDDVKLIEVPVE-YIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 R +R + ++ + + + + +I A +E + + + Sbjct: 226 FGMLIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPAMMILKALVETNDKEIFEG 285 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR--PGEPPTREAAES 383 T T D + T + + + R G P T Sbjct: 286 LVGTPGSKGTDNTFLNDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLGVPDTMSN--- 342 Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSLL--REEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 YD+ K L E ++ + +KL + G Sbjct: 343 -----------YDVGTEFLRKIVLVHLGNTNVTEAQDKDKFKMLLFMTRKLYSLVAGDCA 391 Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVR-----VERAVKERLSLGDLDTLMPQDMI--- 493 D+ D + N+ I G + + L + A+++ + + + + + Sbjct: 392 GDNPDAVQNQEILLGGFLFGMIIKERLEDWLHTSLRMALRDYVRRSPENNFVTPEFLKDF 451 Query: 494 -------NAKPISAAVKEFFGSSQLSQ--------------FMDQNNPLSEITHKRRISA 532 + + A++ F + L ++ N L I H R I Sbjct: 452 PVKICSRTNEQVGGALEYFMSTGNLVSPTGLDLQQTSGFTVVAEKINFLRFIAHFRMI-- 509 Query: 533 LGPGGLTRERAGFEVRDVHP---THYGRVCP--IETPEGPNIGLINSLSVYAQTNEYGFL 587 G + V P + G V T E + L + + + + Sbjct: 510 -HRGSFFAQLKTTTV--PLPKLLSELGVVSTGSSSTDESVVVQLDGKIMGWCSPKQSLVI 566 Query: 588 --ETPYRKVT--DGVVTD-EIHYLSAIEEGNYVIAQANS-------NLDEEGHFVEDLV- 634 Y KV GV T+ EI Y+ G Y ++ + ED V Sbjct: 567 ADTLRYWKVEGTHGVPTNLEIGYIPNSHGGQYPGIYLSAAPARMVRPVKYLALDKEDFVG 626 Query: 635 TCRSKGESSLFSRDQVD-----YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 S + +++ +++ ++S+ A++ PF + + + R + M +Q+ Sbjct: 627 PLEQPFMSIAVTEQEIEAGEHTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQS 686 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 + GT + I + + Sbjct: 687 M----------GT-------------------------PGTAIRYRTDNKAYRLQTG--- 708 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Q P V + G G N VA + + G Sbjct: 709 -----------------QTPIVRAPLHNDYG----------FDNFPNGMNSVVAVISYTG 741 Query: 810 YNFEDSILVSERVVQEDRFTTIHI--QELACVSRDTKLGPEEITADIPN-----VGEAAL 862 Y+ +D++++++ + ++ I V Sbjct: 742 YDMDDAMIINKSAHERGFGHGTIYKTKKYELEEGHKSRSARNIKKLFGFAPGGLVKAEWK 801 Query: 863 SKLDESGIVYIGAEVTGGDIL 883 + +DE G+ +IG V GD++ Sbjct: 802 AAIDEDGLPFIGRMVQNGDLI 822 Score = 64.1 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 61/415 (14%), Positives = 118/415 (28%), Gaps = 66/415 (15%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRS--------VFPIQSYSGNSELQ--YVSYRLGE 77 ++ ++SF E+D GL + P ++ +V + Sbjct: 45 VAPHIESFNALFEKDGLIAQGLLDIGSKTYLDGDDRLGPSGKNRLTVRIKEVFVEKSMLP 104 Query: 78 PV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 P EC+ R VTY + ++ I G K+ +G++P Sbjct: 105 PSNKFSTKNREILPAECRERHVTYRGKMSARMEYSI-----NNGDPKEFIRD---LGQLP 156 Query: 129 LMTDN------------------------GTFVINGTERVIVSQLH--RSPGVFFDSDKG 162 LM + G FV+NG E++I + R+ + Sbjct: 157 LMLMSNKCHLQNNSPAQLVQNKEESEELGGYFVVNGIEKIIRLLVVNRRNFPMAIIRPSF 216 Query: 163 KTHSSGKVLYNARIIPYRGSWLD----FEFDPKDNLFVRIDRRRK---LPATIILRALN- 214 K + I R + N+ R R+ +PA +IL+AL Sbjct: 217 KGRGPAYTEFGMLIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPAMMILKALVE 276 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 ++I + + DN + V LR A + + + Sbjct: 277 TNDKEIFEGLVGTPGSKGTDNTFLNDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLGV 336 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYI---DESTGELICAANMELSLDLLAKLSQSGHK 331 + E + + + + D+ +++ +L + + Sbjct: 337 PDTMSNYDVGTEFLRKIVLVHLGNTNVTEAQDKDKFKMLLFMTRKLYSLVAGDCAGDNPD 396 Query: 332 RI--ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESL 384 + + + G I E L AL + R T E + Sbjct: 397 AVQNQEILLGGFLFGMIIKERLEDWLHTSLRMALRDYVRRSPENNFVTPEFLKDF 451 >UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 3 RepID=RPB2_IIV3 Length = 1140 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 136/956 (14%), Positives = 300/956 (31%), Gaps = 143/956 (14%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYRLG 76 L+ Q+++F FI + GL+ + I+ N L++ + + Sbjct: 23 VADYFKTNGLVKHQIETFNHFISK------GLKTIINNESSIKYQSHDNYSLKFTNIYVE 76 Query: 77 EPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 P QE + + ++Y+ + V + + + ++ V + + Sbjct: 77 YPSIIDDDRTIRDLYPQEARNKDLSYTGNVCVNV--IEMVENKEGKPPQISEQYRVPIAK 134 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 IP+M + H S ++++ HS F Sbjct: 135 IPIMLGSDVC-------------HLSKYTPLENEQINGHSQADQGGY------------F 169 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 + K+ + + R+ +++ + + ++ + + + V ++ Sbjct: 170 IINGKERVLISQVRKAYNKPVCFVKSTSQKEDVLIC-----EMRSMCEETFHSTSVQVKM 224 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 ++ K+ + L + ++ + YID Sbjct: 225 IKNKIMVSLKLKRKLI----DIPVGIVFKCLGYNPDQMGSKFRSLFNLPPEYEKYIDAIK 280 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 + + +++ + D+ +V++ Sbjct: 281 NDCLEEFAYGIAVSAAD------------------GDNSDSGGESGGEEEADQEEHIVKV 322 Query: 367 YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 +R M A + D+ M L + D + Sbjct: 323 FRNMSTSVDKDGGMAATGIT-------IEDVQKSLDMDLFPHLGI---TSTRKQRVDLLA 372 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDL 484 ++KK + K VD+ D ++R+ + GE+ FR+ + ++ ++ D+ Sbjct: 373 FMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRLLYKKFQKTCITQIRNRKPDI 432 Query: 485 DTLMPQDMINAKPISAAVKEFFG-------SSQLSQFMD-QNNPLSEITHKRRISALGPG 536 + I + + ++G + +SQ ++ + + L+ + RR+ + Sbjct: 433 SNFLRTSGITTGILYSFSSGYWGVQRNTYIRTGVSQVVNPKVSLLANYSSLRRV-VIPES 491 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 +E E+R +HP+ VCP+ETPEG +G + +++V+ Q G D Sbjct: 492 KDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTVLNMAVFCQVTT-GISTCEIMDQID 550 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 D + + + N ++ N + GH + + V + Sbjct: 551 SFGVDLKCHCTIKDPNNCLLLLINGSPYGNGH----ANVIHRLNFLNDTNISIVVNRALG 606 Query: 657 TQQVVSVGASLIPFLEHDDA-----------------NRALMGANMQRQAVPTLRADKPL 699 ++ S I + D N+ + ++ A ++ + Sbjct: 607 VIEIFSDAGRFIRPIFDLDKICNFEGEIVPSFKWFLDNQLIRYIDINEAAANSIAIELRD 666 Query: 700 VGTGMERAVAVDS--GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYT 757 + T + G++ + D ++ M G + K Sbjct: 667 LSTNPNTRYNLMELDPCGMFGIVAGIIPFPDRTQSARNCFYSSMVKQAIGFVPCHNLKTE 726 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 + Q P V+ E + E G N VA + GYN EDSI+ Sbjct: 727 TVSHTLNYPQKPLVTT-SFAEYNQL---------NEYPNGINAIVAIACYTGYNQEDSII 776 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPE--EITADIPNVGEAALSKLDESGIVYIGA 875 +++ + F TI + + E EI ++ + + + GIV + Sbjct: 777 LNKSSIDRGLFGTITYNTFTAQEKKNGIIEERIEIPSNAIKIRDCNYGLVGPDGIVRLRQ 836 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 V GD+L+ KVT K + Q + DSS+ V +G G V + Sbjct: 837 RVKKGDVLICKVTIKNKNQD---------------EKLVDSSVIVQHGEEGYVDRI 877 Score = 279 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 107/444 (24%), Positives = 168/444 (37%), Gaps = 80/444 (18%) Query: 920 VPNGVSGTVI----------DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEA 969 PNG++ V D + + +++ Q KK+ E +I Sbjct: 753 YPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFTAQEKKNGIIEERIEIP 812 Query: 970 GLFSRIRAV---LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE 1026 +IR LV ++ + L +T + K Q E+L + ++H E Sbjct: 813 SNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIKNKN-QDEKLVDSSVIVQHGEE 871 Query: 1027 KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 ++ + G +IVKV + R + GDK KG I P EDMP Sbjct: 872 GYVDRIVDNVIDG-------CRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMP 924 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 + +G DI++NP +PSRM I QI+ T +G Sbjct: 925 FTASGMTPDIIINPNCIPSRMTINQIISTVMGK--------------------------- 957 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 + + N R + E+ LKL Sbjct: 958 ----------------------LYTVNPNPRFRNGNSFQENSNTILKELCHHLKLNGFDP 995 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 SG +Y G TGE+ + + +G Y +L H+V DKMHARS G + + +QP G++Q G Sbjct: 996 SGSEVMYSGFTGERIQSTIFMGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGG 1055 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKMY------KNIVDGNHQME 1316 G RFGEME + +GA L E + + SD DV M + + Sbjct: 1056 GLRFGEMEKDCILVHGATQFLNERMFLNSDPFQIDVCKDCGMMSSTSKKCHHCGSINVKR 1115 Query: 1317 PGMPESFNVLLKEIRSLGINIELE 1340 +P S LL+E+ +GI +++ Sbjct: 1116 CNIPYSCKNLLQELNGMGIKTKID 1139 >UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SF17_TRIAD Length = 617 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 171/316 (54%), Positives = 231/316 (73%), Gaps = 10/316 (3%) Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 TCINQ P V +G+ VE GD+LADG STD+GELALG+N+ VAFMPWNGYNFEDSIL+SER Sbjct: 302 GTCINQRPIVKVGQYVEAGDILADGASTDMGELALGKNILVAFMPWNGYNFEDSILLSER 361 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 +V++D +T++HI E V+RDT+LGPEEIT DIPNV E L+ LDE+GIV IGA+V GD Sbjct: 362 LVKDDIYTSVHINEYEIVARDTRLGPEEITRDIPNVNEENLTHLDETGIVNIGAQVKPGD 421 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 ILVGKVTPK E+ LTPEEKLLRAIFGEKA+DV++SSLRVP G G ++DV++FT+ GV+K Sbjct: 422 ILVGKVTPKTESPLTPEEKLLRAIFGEKAADVRNSSLRVPPGEKGVIVDVKIFTKRGVQK 481 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG----------VEAEKLDK 991 D+RA+ IE ++++ KD+ +E +I+E +F++++ +L ++ LD Sbjct: 482 DERAISIERNEIEKFSKDMEDEKRIIEDYVFNKVKVILFGKKVKDKSNKSITIDQNFLDD 541 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 L + L L D++ + +++L E YD + EK + K K+ GDDL GVLKI+K Sbjct: 542 LDNKQVWSLELDDKKSKEDIQKLEEFYDNYLKKLEKDYKHKVEKLQSGDDLPQGVLKIIK 601 Query: 1052 VYLAVKRRIQPGDKMA 1067 +Y+A K +IQPGDKMA Sbjct: 602 IYVANKLKIQPGDKMA 617 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 133/292 (45%), Positives = 203/292 (69%), Gaps = 1/292 (0%) Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY-IAGKVVAKDYIDESTGELICAAN 314 ++ +KG R+T R ++ EK++ + E I K +AKD ++ +TGE++ + Sbjct: 10 ANTKEIIFKKGIRVTPRILKDFEKNNTDRYYITTEDDIKRKFLAKDIVNLTTGEVLYEST 69 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 E++ +++ + I + N++D G +I +T+ +D D AL +IY+++RPGE Sbjct: 70 QEVTQEIIDSVKALNINEIVIIDVNNVDSGSFIRDTIVLDKNKDEEQALADIYKVLRPGE 129 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 P T E A+ LFE++FF ++YDLSAVGRMK N+ + + L+KDDII ++K L++ Sbjct: 130 PSTPEVAKQLFESMFFDNEKYDLSAVGRMKINKKHDLDVPHTTTALTKDDIIVIIKHLLN 189 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 ++ G G VDDID L NRR+RSVGE+ ENQFR+GLVR+++++ +R+S ++D +MP D++N Sbjct: 190 LKCGIGTVDDIDSLANRRVRSVGELVENQFRMGLVRMQKSIVDRMSSVEIDNVMPHDLVN 249 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 +K + + ++EFFG SQLSQFMDQ NPL+EITHKRR+SALGPGGLTRERAGFE Sbjct: 250 SKTLMSYLREFFGISQLSQFMDQTNPLAEITHKRRLSALGPGGLTRERAGFE 301 >UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella natans RepID=Q3LW27_BIGNA Length = 1159 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 128/879 (14%), Positives = 289/879 (32%), Gaps = 116/879 (13%) Query: 249 ETASFDIEANGKVYVEKGRRITARH--IRQLEKDDVKLIEVPVEYIA-----GKVVAKDY 301 E F I N KV V + R + + ++ +++ Y + G +V Sbjct: 176 EGGYFIINGNEKVLVAQERLVKNKVYIFSKIFDKKTRVMAQCRSYDSSLYNQGYMVYLKL 235 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 + + + + + + + L + + L + I ++ + +N + Sbjct: 236 VTDKSNNPNQCSEITVKIASLR----AEIPLVILLKFLGFKNDKEIINSIFKNNSNSKKL 291 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFF---SEDRYDLSAVGRMKFNRSLLREEIE--G 416 ++ + + T A + F + + D R ++ LL Sbjct: 292 NMLYN-SFLGVTKVQTISHALRYIVDRSFSKSNNKKLDPEKTAREIIDKKLLPHMGTSIN 350 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 S I + +LI+ N + DD D N+R+ G + + F + R + VK Sbjct: 351 SRFRKGLFICYMAHRLINTLNEIEQPDDKDSYKNKRVDISGHLFSSLFNNLIKRSIKDVK 410 Query: 477 ERL--SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLS 522 +L + D +++ ++ ++ + + SQ +++ + LS Sbjct: 411 NQLLKKVKKSDATELEELFSSNILTNGFRYSLATGNWIIDGMLDYKTGVSQVLNRMSYLS 470 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 I+H R+++ T ++R VH +++G VCP+ETPEG G++ + + A Sbjct: 471 MISHLSRLNS----SYTSNGKILDIRRVHTSYWGIVCPVETPEGQTCGIVKNFAFLAHVT 526 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 ++ + ++ I+ + ++ G ++ + S + Sbjct: 527 NSHHIQKNIIQFLKKIMIKNSFTKPMIKTKKDK---PDISIFVNGSWIGNTFEYFSLMKY 583 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT--LRADKPLV 700 + R Q ++ V + ++ R + ++ R P L+ Sbjct: 584 LITLRRQ----EIIPFDVS--------IVFNEKNKRIFIWSDPGRIKRPLFVLKNSNSFF 631 Query: 701 GTGME---RAVAVDSGVTAVAKRGGVVQYVDASRI-------------VIKVNEDEMYPG 744 +E + + + + +V+Y+D I + V++ ++Y Sbjct: 632 NHSIEKIAKKIKDNFHRWYFYIKNSIVEYLDTEEIENIVIKLNYYNNTELIVDQTQIYKK 691 Query: 745 EAGIDIY-------------NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP---- 787 +++ +S +NT + M ++G + D Sbjct: 692 MINFSEIHASSILGVSASQVPFSQHNQSPRNTYQSSMGKQAIGINYSNFQLRYDTQINIL 751 Query: 788 --------------STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 E+ G N +A + ++G+N EDS++++ V+ F TI Sbjct: 752 ESNQRPLVFTIQKLCLRGQEMPSGINTIMAILSYSGFNQEDSLIINHSSVERGLFRTIIY 811 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 + A R+ I + L LD G I V G D+L+ K Sbjct: 812 KTFA--ERENTNVNGIIEKIELESKSSNLFGLDIDGTRKIETLVNGDDVLISKTIKLTGK 869 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK--DKRALEIEEM 951 G+ + S L++P G V + +G K R I E Sbjct: 870 -------------GDTKVNTIHSDLKLPLNSQGVVDSIMYSLDEGGYKIIKVRIRSIREP 916 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + L + I+ + ++ + +G E +++ Sbjct: 917 VIGDKFSSLHGQKGIIGYSYRQSLLPTTATSVTPDLIMNPHAIPSRMTIGHMIEMLMSKV 976 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 + + + E + +++ G+ K++ Sbjct: 977 SSHSGKLGDATAFSEGNIGKIIGHLSKFGIHHFGLEKMI 1015 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 83/444 (18%), Positives = 152/444 (34%), Gaps = 77/444 (17%) Query: 920 VPNGVSGT--VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 +P+G++ ++ F ++ + + K +E G+ +I Sbjct: 772 MPSGINTIMAILSYSGFNQEDSLIINHSSVERGLFRTIIYKTFAERENTNVNGIIEKIE- 830 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 L + LD + L D+ ++ +L + D + L+ Sbjct: 831 -LESKSSNLFGLDIDGTRKIETLVNGDDVLISKTIKLTGKGDTKVNTIHSDLKLPLNSQG 889 Query: 1038 QGDD----LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 D L G KI+KV + R GDK + HG KG+I +P Sbjct: 890 VVDSIMYSLDEGGYKIIKVRIRSIREPVIGDKFSSLHGQKGIIGYSYRQSLLPTTATSVT 949 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 D+++NP +P + IG I ++ + Sbjct: 950 PDLIMNPHAIP---------------SRMTIGHMIEMLMSKVSS---------------- 978 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 G F +I L + G ++ Sbjct: 979 -----------------------HSGKLGDATAFSEGNIGKIIGHLSKFGIHHFGLEKMI 1015 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 G G+ ++ + VG +Y +L H+V DK +RS G Y ++T+QP+ GK + GG RFGEM Sbjct: 1016 SGFNGDILQKSILVGPIYYQRLKHMVVDKFFSRSRGPYEILTRQPVEGKTREGGLRFGEM 1075 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTK---------------MYKNIVDGNHQMEPG 1318 E + ++G++ L+E L +SD + I + Sbjct: 1076 ERDCVLSHGSSLFLKERLMDESDKFRVHICEKSGLFCPANLKTQTFWSTIYHSKSICQIF 1135 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +P + +L +E+ ++ I L + Sbjct: 1136 IPYACKLLFQELIAMCIAPRLVVK 1159 Score = 86.4 bits (212), Expect = 8e-15, Method: Composition-based stats. Identities = 98/751 (13%), Positives = 243/751 (32%), Gaps = 128/751 (17%) Query: 28 LSIQLDSFQKFIEQ------DPEGQYGLEAAFRSVFPIQS----------YSGNSELQYV 71 + Q+ SF FI + D ++ ++++ I + Sbjct: 23 IKQQIISFNDFIRKESQHIIDKIPNLVIQISYKNSNKIVNRILLLKQLYTEKPRIIKTRE 82 Query: 72 SYRLGEPVFD-------VQECQIRGVTYSAPLRVKL--RLVIYEREAPEGTVKDIKEQEV 122 Y L EP +D + ++R +TYS+ +R+++ + + V + ++ + Sbjct: 83 LYNLVEPSYDEGELNISPNKSRLRNITYSSKVRIQVFDEITDKHDANLKKKVVNKSKKFI 142 Query: 123 YMGEIPLM------------------------TDNGTFVINGTERVIVSQLHRSPGVFFD 158 Y+G+ P M + G F+ING E+V+V+Q + Sbjct: 143 YIGKFPCMIKSDTCYLNNFSEISLARNDECPFDEGGYFIINGNEKVLVAQERLVKNKVYI 202 Query: 159 SDKGKTHSSG-----KVLYNARIIPYRGSWLDFEFDPKDN------LFVRI-DRRRKLPA 206 K + + ++ +L D +N + V+I R ++P Sbjct: 203 FSKIFDKKTRVMAQCRSYDSSLYNQGYMVYLKLVTDKSNNPNQCSEITVKIASLRAEIPL 262 Query: 207 TIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMEL---VPERLRGETASFDIEANGKVY 262 I+L+ L + ++I++ F+ + N L + + ++ + Sbjct: 263 VILLKFLGFKNDKEIINSIFKNNSNSKKLNMLYNSFLGVTKVQTISHALRYIVDRSFSKS 322 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 K ++K + + + K + A + +L+ + Sbjct: 323 NNKKLDPEKTAREIIDKKLLPHMGTSINSRFRKGLF---------ICYMAHRLINTLNEI 373 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAE 382 + + + + + + ++ ++ + ++ + E E Sbjct: 374 EQPDDKDSYKNKRVDISGHLFSSLFNNLIK----RSIKDVKNQLLKKVKKSDAT--ELEE 427 Query: 383 SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM---KKLIDIRNGK 439 N+ + RY L+ +L + S +L++ + ++ +L Sbjct: 428 LFSSNILTNGFRYSLA--TGNWIIDGMLDYKTGVSQVLNRMSYLSMISHLSRLNSSYTSN 485 Query: 440 GEVDDIDHLGNRRIRSV------------GEMAENQFRVGLV-------RVERAVKERLS 480 G++ DI RR+ + G+ + +++ + + L Sbjct: 486 GKILDI-----RRVHTSYWGIVCPVETPEGQTCGIVKNFAFLAHVTNSHHIQKNIIQFLK 540 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 + + MI K + F S + + + + + RR + Sbjct: 541 KIMIKNSFTKPMIKTKKDKPDISIFVNGSWIGNTFEYFSLMKYLITLRR----------Q 590 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 E F+V V R+ P G I ++ N F K+ + Sbjct: 591 EIIPFDVSIVFNEKNKRIFIWSDP-----GRIKR-PLFVLKNSNSFFNHSIEKIAKKIKD 644 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHF-VEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 + + N ++ ++ E + + + + +++ ++ Sbjct: 645 NFHRWY--FYIKNSIVEYLDTEEIENIVIKLNYYNNTELIVDQTQIYKKMINFSEIHASS 702 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAV 690 ++ V AS +PF +H+ + R ++M +QA+ Sbjct: 703 ILGVSASQVPFSQHNQSPRNTYQSSMGKQAI 733 >UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTL9_ENTBH Length = 1066 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 98/476 (20%), Positives = 159/476 (33%), Gaps = 67/476 (14%) Query: 883 LVGKVTPKGETQLTPEE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFT 935 ++ P + +P ++ + G A ++K D+ L N + +I + Sbjct: 638 IIANTIPFADHNPSPRNIYQCQMAKQAMGIAAYNIKYRVDNKLYNINYLQHPLIQTSNYQ 697 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + + + + L + + + EK DK+ Sbjct: 698 CFEKFPLGFNCIVAVLSYTGYDMEDAIILNKASVNRGMFNGFITMNEKIILEKNDKILYT 757 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 +E L + + E K R L V Sbjct: 758 PPIESKLKTNDIMLTYKSDGIIKTVRYENIEMGSVEKIRVFQNS--LTEKSNLTVIFTFR 815 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 + R GDK RHG KG+ + + DMP+ ENG DI++NP PSRM IG ++E+ Sbjct: 816 ILRNPVVGDKFCSRHGQKGICAFLWNEIDMPFTENGLKPDIIINPHAFPSRMTIGMLIES 875 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 G AA G +N + + Sbjct: 876 MCGKAAVKFGKFVNGDPFIDNKNNDI---------------------------------- 901 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + + LK G +Y G G + + + +G +Y +L Sbjct: 902 -------------NVNKFNVNRKLKECGFNYYGNEPMYSGVFGTELKTDIFIGLVYYQRL 948 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DK R G+ + TQQP+ G+ GG RFGEME L A+G++ +++ L S Sbjct: 949 KHMVSDKFQVRVGGAITSTTQQPVKGRKNKGGIRFGEMEKDTLIAHGSSALIKDRLLDCS 1008 Query: 1296 DDVN-GRTKMYKNI----------VDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 D KNI G MP F LL E+ + I +E + Sbjct: 1009 DKTTFKYCYKCKNILFSSPNDKCKCGGIKSKNIKMPYVFKYLLAELMGMNIKLEFD 1064 Score = 233 bits (593), Expect = 5e-59, Method: Composition-based stats. Identities = 130/943 (13%), Positives = 284/943 (30%), Gaps = 143/943 (15%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP--- 78 ++ + ++ + F E++ ++ P+ + + + +P Sbjct: 1 MESKNIGNLHIQQFNALFEKNI-----IKNVVYKTKPLI--FKGFVMNFEKIEIHKPYVL 53 Query: 79 ------VFDVQECQIRGVTYSAPLRVKLRL-----VIYEREAPEGTVKDIKEQEVYMGEI 127 EC+ G TYS + VK++L +++ G + + + M + Sbjct: 54 KQDVDNRLLPHECRETGRTYSGNIFVKIKLMYKNEILFHDYRGAGQLPIMVKSN--MCHL 111 Query: 128 PLMTD-------------NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +MTD G F+ING +R+I + F K +S Y+ Sbjct: 112 SMMTDQELLAVKEDPNEHGGFFIINGYDRIIRFHIAHKRNWVF-GIYSKPKNSIFSGYSC 170 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 I S D E K+ + +D I L+ Y ++ + + Sbjct: 171 SI----RSVCDDEIGQKNEIVHTVD------GNIFLKCFFYHKGYLIPIIY--------- 211 Query: 235 NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 + A ++ + ++ R +E + Sbjct: 212 -------------------ILRALQNTTDKEIYTLLNQNPRAIEFLTKSNQPYYNKDECL 252 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + + + A EL +L LS + L + I ++ + Sbjct: 253 NYLGSRFKHIFRIDNYKEAGEELLNRILIHLSSH-IDKFNLLIYSINKLFKLIDGKIKSE 311 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK-FNRSLLREE 413 + + + + P E+L + + + K ++ R+ Sbjct: 312 DIDLSSNHELYTEAQLIPLCIK---------EHLEEFKKLFKTRIIKLFKREVKNQYRDN 362 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 + I ++ D I + +I N E D ++ ++F + + Sbjct: 363 ETDTEITTQIDDIMSTNRSTNI-NDTVEFD--------------KLFSDEF------MIK 401 Query: 474 AVKERLSLGDLD--TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 + E DLD T + + + + + +S + + N +H +S Sbjct: 402 KIVELFKKTDLDIGTKIHKFLSTGNITTYNCSDLLQTSGFTFLSGRINYWEFASHFYSVS 461 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT--NEYGFLET 589 G VR + P +G CPI TP+G GL+ L+ + ++Y F Sbjct: 462 ---RGAFFSNLKITSVRKLQPESFGFFCPINTPDGSLCGLLTYLTQQCEITCSKYIFDTN 518 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ 649 ++ + + + ++ + + + K E D+ Sbjct: 519 ILYQLGVSFINLNNNMIPVFY-NGKIMGYTSYPIKLIEDLRNYRCKNKLKIEIVYEFGDK 577 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA 709 +D + +S +S+ + +++ +G Q L + T + + Sbjct: 578 IDEI-ISICDDISLLIRKVWNKKNN--MEEYIGIKEQVFLDIELGT---VHNTFNYKEID 631 Query: 710 VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN--QNTCINQ 767 +++ + + + D + + + +M GI YN+ KY N N Q Sbjct: 632 INNM---FSIIANTIPFADHNPSPRNIYQCQMAKQAMGIAAYNI-KYRVDNKLYNINYLQ 687 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P + + LG N VA + + GY+ ED+I++++ V Sbjct: 688 HPLIQTSNYQC------------FEKFPLGFNCIVAVLSYTGYDMEDAIILNKASVNRGM 735 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI--GAEVTGGDILVG 885 F + + + GI+ + G V Sbjct: 736 FNGFITMNEKIILEKNDKILYTPPIESKLKTNDIMLTYKSDGIIKTVRYENIEMGS--VE 793 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 K+ + + F + V +G G Sbjct: 794 KIRVFQNSLTEKSNLTVIFTFRILRNPVVGDKFCSRHGQKGIC 836 >UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CB0F Length = 1114 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 102/432 (23%), Positives = 163/432 (37%), Gaps = 69/432 (15%) Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 P GV+ V + +T +E + + L E L + R Sbjct: 739 PMGVNAVVAVIS-YTGYDMEDAMIINKSSFERGFGHGTILKSEFFHLNPDSYF-ERDPSK 796 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 A + D LP L + D +L++ E H E ++ G+ Sbjct: 797 AELISKLDDDGLPFPGTL-VEENDPICCYFNGELSKYVVEKFHGKEIAY-VDNVRLCCGE 854 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 L V + V R GDK A R G KG+ S++ P ED+P+ ++G D+V NP Sbjct: 855 TLNSA---SVCITFRVPRNPVVGDKFASRAGQKGICSQMWPCEDLPFTDSGLVPDVVFNP 911 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 G PSRM I ++E G +A G + D Sbjct: 912 HGFPSRMTIAMMIELMAGKSASVHG-------------------------------KVHD 940 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + F E D + +LL+ G ++Y G G + Sbjct: 941 ATPFIFSE-------------------DNSAIDYFGKLLEAAGYNYYGTEKMYSGVDGRE 981 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + G +Y +L H+V DK RSTG +TQQP+ G+ + GG RFGEME +L + Sbjct: 982 MNAAIFFGIVYYQRLRHMVLDKWQVRSTGPVDTLTQQPIKGRRRGGGVRFGEMERDSLIS 1041 Query: 1281 YGAAYTLQEMLTVKSDDVNGR------------TKMYKNIVDGNHQMEPGMPESFNVLLK 1328 +GA+ L + L SD R ++ + DG + +P F LL Sbjct: 1042 HGASALLHDRLFECSDKYKARSALFRCPKTGVKKEVCRLCSDGGNVKTIEIPYIFRYLLI 1101 Query: 1329 EIRSLGINIELE 1340 ++ ++ I++++ Sbjct: 1102 QLAAVNIHLKVY 1113 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 107/738 (14%), Positives = 228/738 (30%), Gaps = 111/738 (15%) Query: 214 NYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH 273 I F + I + L P L + D G ++ KG R Sbjct: 127 GVNQHPIEKDFGKIPIMIKSNRCHLKNLTPRELVEKNEHED--EWGGYFILKGHEKLIRM 184 Query: 274 IRQLEK----------DDVKLIEVPVEYIAGKVVAKD---------YIDESTGELICAAN 314 + + + + I + V++D ++ + T +++ + Sbjct: 185 LIATRRNYPIALSRRTWKQRGASFSEKGILLRCVSEDETSTNNVLHFVTDGTVKVMLSYG 244 Query: 315 MELSLDLLAKLSQSGHKRIETLF-------TNDLDHGPYISETLRVD----PTNDRLSAL 363 L L + +S + +D + +T+ D + A Sbjct: 245 RSLYFIPLCLILKSLINVSDLYVFKRLTEGRDDDFYFKSCIKTMLYDVHVQGIDTHEEAK 304 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 I + R P F DL + + Sbjct: 305 CFIGKTFRLKFPD--------QSPWFTDAQICDLIMEKCLAI--------HLNDNKDKFN 348 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK----ERL 479 +I + +KL G+ ++ D L + I + G + + + L ++ ++L Sbjct: 349 LLIFMTQKLFAFVQGQCCEENADSLMVQEILTGGSIYQQVLKDRLQGFLNNLRLVASKKL 408 Query: 480 SLGDLDTLMPQDMIN----AKPISAAVKEFFGSSQ-------------LSQFMDQNNPLS 522 S G L+++ M + A I A+ F + L + N + Sbjct: 409 SEGKLNSISQIQMASFCKRAGGIEKAMNNFVATGNCHNSLSGLPQDKGLVIMAENINRMR 468 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++H A+ G + R + P +G +CP+ TP+G GL+N LS Sbjct: 469 YMSHF---KAIHRGAYFTTMRTTDGRQLLPEAWGFICPVHTPDGSPCGLLNHLSKDCIVT 525 Query: 583 EYGFLE---------TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 E T + +V + +Y + +G + A++N + V+ L Sbjct: 526 NVPDYEILKNLSCVLTDLGVMPLEIVEKKNNYYDVLLDGKLIGYVADTN---AQNLVQSL 582 Query: 634 VTCRSKG-------ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 + +G E L + + + P L L+G Q Sbjct: 583 RVLKIEGNVVPNTLEIVLVPKKDSESQYPGIFLFTGPNRLMRPVLNLALNKTELIGTFEQ 642 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 L+ ++ G + + S T ++ ++ D ++ + + +M Sbjct: 643 VYLEICLKLNEAYEGLTTHKEL---SHTTFLSNLACLIPMPDCNQSPRNMYQCQMGKQSM 699 Query: 747 GIDIYNL-TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 G ++ + + P G + L + +G N VA + Sbjct: 700 GTPVHTWDIQAETKLYRLLLPSSPLFRPGHY----------DAIKLDDFPMGVNAVVAVI 749 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 + GY+ ED++++++ + ++ + + + +SKL Sbjct: 750 SYTGYDMEDAMIINKSSFERGFGHGTILKS------EFFHLNPDSYFERDPSKAELISKL 803 Query: 866 DESGIVYIGAEVTGGDIL 883 D+ G+ + G V D + Sbjct: 804 DDDGLPFPGTLVEENDPI 821 Score = 61.4 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 61/396 (15%), Positives = 120/396 (30%), Gaps = 76/396 (19%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG--NSELQYVSYRLGEP--- 78 + L +DSF I++ GL +++ PI G +Q + RL P Sbjct: 37 LQTLGKPHVDSFNLLIDK------GLNLICKNLIPIHFSVGSDRYTVQIENLRLLYPVMP 90 Query: 79 ---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 EC+ R TYS L K+ + G+IP+ Sbjct: 91 DGSFALKTQKIFPCECRQRASTYSGNLFGKITWSVNGVNQHPIEK--------DFGKIPI 142 Query: 130 MTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTH 165 M + G F++ G E++I + + + +T Sbjct: 143 MIKSNRCHLKNLTPRELVEKNEHEDEWGGYFILKGHEKLIRMLIATRRN-YPIALSRRTW 201 Query: 166 SSGKVLYNARIIPYRG---------SWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNY 215 ++ + I R + L F D + + R +P +IL++L Sbjct: 202 KQRGASFSEKGILLRCVSEDETSTNNVLHFVTDGTVKVMLSYGRSLYFIPLCLILKSLIN 261 Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 ++ F+++ D+ + L +D+ G E+ + + R Sbjct: 262 VSDL---YVFKRLTEGRDDDFYFKSCIKTML------YDVHVQGIDTHEEAKCFIGKTFR 312 Query: 276 QLEKDDVKLIEVPV--EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 D + I K +A D + + + Q + Sbjct: 313 LKFPDQSPWFTDAQICDLIMEKCLAIHLNDNKDKFNLLIFMTQKLFAFVQ--GQCCEENA 370 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 ++L ++ G I + + D L+ L + Sbjct: 371 DSLMVQEILTGGSIYQQVLKDRLQGFLNNLRLVASK 406 >UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax=cellular organisms RepID=Q1JNX7_STRPC Length = 249 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 124/258 (48%), Positives = 154/258 (59%), Gaps = 54/258 (20%) Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MPY +GTPVDI+LNPLGVPSRMNI G + L Sbjct: 1 MPYLPDGTPVDIMLNPLGVPSRMNI---------------GQVMELHLGMAARNL----- 40 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 G+ IATPVFDGA ++ + ++ + Sbjct: 41 ----------------------------------GIHIATPVFDGASSEDLWDTVREAGM 66 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 + + LYDGRTGE F+ V+VG MYM+KL+H+VDDK+HARS G YSLVTQQPLGGKAQ Sbjct: 67 DSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQ 126 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 FGGQRFGEMEVWALEAYGA+ LQE+LT KSDDV GR K Y+ I G +PG+PESF Sbjct: 127 FGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFR 186 Query: 1325 VLLKEIRSLGINIELEDE 1342 VL+KE++SLG+++ + DE Sbjct: 187 VLVKELQSLGLDMRVLDE 204 >UniRef50_A7SSE2 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis RepID=A7SSE2_NEMVE Length = 913 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 107/789 (13%), Positives = 233/789 (29%), Gaps = 96/789 (12%) Query: 197 RIDRRRKLPATIILRALNY---TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +ID + T ++ A+ + L K + + + E Sbjct: 77 KIDNVPQGSVTKVIAAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIR 136 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 + + Y R + + + + + + Y+++ + A Sbjct: 137 MLILPRRNYPLAIIRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAY 196 Query: 314 NMELSLD----LLAKLSQSGHKRIETLFTNDLDHGPY-------ISETLRVDPTNDRLSA 362 EL +L L + I ++ + + T + + ++ S Sbjct: 197 RKELYYVPVVFILKALMNVTDQHIYRELIKAEENNTFWKDCVAMMLRTAQEEGAVNQKSV 256 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L I R D + AV + + + + Sbjct: 257 LEYIGLRFR---------------VKMRLPDWFSDEAVAQYLIQQCICIH--LDTNADKF 299 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + +I + +KL + K + D N+ + G + ++ Sbjct: 300 NLLILMTRKLYALALEKCCAESADSPMNQEVLLGGHLYLMVLKMEYF------------- 346 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 + IS + S + D+ N ++H R + G + Sbjct: 347 ---------LATGNLISKSGLALQQISGFTVVADRLNYFRFLSHFR---CIHRGAFFSQM 394 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 VR + P +G +CP+ TP+G GL+N L+ Q L ++ + Sbjct: 395 RTTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAAGCQVVNVVPLVAHMLRLLCTMGMIP 454 Query: 603 IHY-LSAIEEGNYVIAQANSNL-----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV- 655 + + + Y + L D L + GE + ++ + + Sbjct: 455 VDAPVPGDYKNYYPVVMDGRVLGSVDRDLAPTLANRLRIMKVLGEERVPQFLEICLVPIT 514 Query: 656 ------STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL---VGTGMER 706 + S A ++ + + N+ M + ++ + + L V T ME Sbjct: 515 KVASQYPGLFIFSSPARMMRPVLNLAVNKIEMIGSFEQVYMDIAIVQEELHEGVTTHMEL 574 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 ++ + Y D ++ + + +M G ++ R++ Sbjct: 575 K-----PTAMLSAIASMTPYSDFNQSPRNMYQCQMGKQTMGTPVHAFQ--HRTDNKLYRI 627 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P L P + D E LG N VA + + GY+ ED++++++ + Sbjct: 628 QTPQSPLVRPASHDFYIMD-------EYPLGTNAIVAVISYTGYDMEDAMVLNKASYERG 680 Query: 827 RFTTIHIQELACVSR---DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 + + + +LD G +GA ++ GD Sbjct: 681 FAHGSIYKAQFVNLEPKSQDRTSSSNLQFGTLPDDPRIDGRLDADGFPPLGAHLSTGDPY 740 Query: 884 VGKV-TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV-----IDVQVFTRD 937 + T GE + L I ++ + D +G G ++ F+ Sbjct: 741 YSYIDTNTGEAVVKKYSNLEAGIIDDRNPIIGDK-FSSRHGQKGICSQKWPVENMPFSES 799 Query: 938 GVEKDKRAL 946 G+ D Sbjct: 800 GMTPDIIFN 808 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 95/286 (33%), Gaps = 20/286 (6%) Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 P G + V + +T +E + + + LE + + Sbjct: 648 YPLGTNAIVAVIS-YTGYDMEDAMVLNKASYERGFAHGSIYKAQFVNLE----PKSQDRT 702 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + ++ L PR G D + L D + K Sbjct: 703 SSSNLQFGTLPDDPRID----GRLDADGFPPLGAHLSTGDPYYSYIDTNTGEAVVKKYSN 758 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 + + R GDK + RHG KG+ S+ P+E+MP+ E+G DI+ N Sbjct: 759 LEAG----------IIDDRNPIIGDKFSSRHGQKGICSQKWPVENMPFSESGMTPDIIFN 808 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G PSRM IG ++E+ G +A G +A E ++ + + + Sbjct: 809 PHGFPSRMTIGMMIESMAGKSAALNGHVYDATPFTFSEDDSAIDYFGKLLVKWVEGINGL 868 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP 1205 L ++ + + TPV+ E +L P Sbjct: 869 VLEVQGFRGWFNQSQGFKSYLRY-TPVYLPLTEPHPYDLAITTLYP 913 Score = 58.7 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 50/347 (14%), Positives = 96/347 (27%), Gaps = 87/347 (25%) Query: 6 TEKKRIRKDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 + K K++G+ + L+ ++SF +E+ Sbjct: 14 SLKNLTLKNYGRLSDTQKQSIQDLVRPHIESFNFMLEEGLPLAA---------------- 57 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +C+ +G TY + L+V L+ I T Sbjct: 58 --------------------QCREKGSTYCSKLQVTLQWKIDNVPQGSVTK--------V 89 Query: 124 MGEIPLMTDN------------------------GTFVINGTERVIVSQL--HRSPGVFF 157 + IPLM + G F++NG E++I + R+ + Sbjct: 90 IAAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLAI 149 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSW----LDFEFDPKDNLFVRIDRRR---KLPATIIL 210 K S Y ++ +G + + N+ + I R+ +P IL Sbjct: 150 IRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVFIL 209 Query: 211 RA-LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 +A +N T + I + +N + V LR + + + Sbjct: 210 KALMNVTDQHIYRELIKAE----ENNTFWKDCVAMMLRTAQEEGAVNQKSVLEY---IGL 262 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 R +L + D + LI Sbjct: 263 RFRVKMRLPDWFSDEAVAQYLIQQCICIHLDTNADKFNLLILMTRKL 309 >UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0ERH0_ENTDI Length = 1106 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 83/441 (18%), Positives = 149/441 (33%), Gaps = 70/441 (15%) Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 P G + V + D + E + + ++ + G + + + + Sbjct: 714 YPTGANAIVAVISYTGYDMEDALIIKKSAIERGFGHGSQYKAYKVDFEKEGEKNEMFSGI 773 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + G ++ + + ++++ + + G Sbjct: 774 TSSGEIFDEHLDDDGLPRPGEIFENSPIYSHIDKITGKI--KGKVLMGERGYIESVRIVG 831 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D L+ V + R GDK + RHG KG +S +DMP+ E+G DI++N Sbjct: 832 GDNIDSGLQKAVVRVRYNRTPVIGDKFSSRHGQKGTLSLHYQEKDMPFTESGMTPDIIIN 891 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P H + I + +M A +GA + Sbjct: 892 P---------------HAFPSRMTIAMLVESM----------------ASKVGALKGEYQ 920 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D + F +E + + L G LY G G Sbjct: 921 DATPFKFDE-------------------ENTAVDYFGKQLLKYGYNYYGSEPLYSGIYGN 961 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + + +G +Y +L H V DK RSTG S+VT QP+ G+ + GG RFGEME +L Sbjct: 962 ELQSDIYIGVVYYQRLVHQVKDKYQVRSTGPISIVTHQPIKGRKRGGGIRFGEMERDSLV 1021 Query: 1280 AYGAAYTLQEMLTVKSD----DVNGRTKMYKNIVDGNH--------------QMEPGMPE 1321 A+G + + + L SD V + I + +P Sbjct: 1022 AHGTSMLVHDRLFECSDKCYHYVCTKCGSICTIKRSKEYDKMICQSCGPTSIVKKIQIPY 1081 Query: 1322 SFNVLLKEIRSLGINIELEDE 1342 F L E+ ++ + + L+ + Sbjct: 1082 VFRYLAAELSAMNVRLNLKVD 1102 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 117/848 (13%), Positives = 255/848 (30%), Gaps = 88/848 (10%) Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS-WLDFEFDPKDNLFVRIDRRRKLPA 206 G+ + + + + + Y G L + ++P Sbjct: 51 MELSCTGISIEKPRYNGLPLFPYMCRSAALTYSGKIRLTITIKENETSKTIEVDGGEIPI 110 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 + +E I + ++ + P + G IE ++ V Sbjct: 111 MVGTSKCWIGSEYITP-----------EERINIREDPHEIGGYFIINGIERYLRMIVYAK 159 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 IR + I +D + N +++L + K Sbjct: 160 ANHPLAVIRPSWTNKGAHFTKYGIIIRCMR--EDITTLTNTLHFLD-NGKVTLRFIFKKQ 216 Query: 327 QSGHKRIETLFTNDLDHGPYISETLRVDP-TNDRLSALVEIYRMMRPGEPP----TREAA 381 + + L I E + ++ N L E+ G P T E Sbjct: 217 EFFIPVVLLLRVYGGMSDREIFELITMNNYENSNLVNAAEMLVRRENGSPLNGLNTPEQV 276 Query: 382 ESLFENLFFSED--RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 S + F ++ + K S D +I +++KL + +G+ Sbjct: 277 LSYIGSKFRLIMDSTEGVNDIELGKRVLEEFCLVHLSSYSEKSDLLIFMLQKLFALVHGE 336 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE-----------RAVKERLSLGDLDTLM 488 + + +D ++ + G + + + + + + VK+ + + L Sbjct: 337 IDEEGVDTPMSQGVLLPGHLYQTVIKEEIQNILSKARLFILKDLKDVKKGSKITERVYLQ 396 Query: 489 PQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISALG 534 AK +K F + S ++ N +H ++ Sbjct: 397 RILSNVAKSFGTRIKSFISTGNFETSSTTDLQQTNGFSITAERLNHSRFTSHF---VSVH 453 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 G +R + P +G +CP+ TP+G GL+N +V + N P +K+ Sbjct: 454 RGAFYTTMKTTSIRKLVPEAWGFMCPVHTPDGAPCGLLNHFAVSCRINARKHP-LPEQKI 512 Query: 595 TD-----GVVTDEIHYLSAIEEGNYVIAQANSNLD--EEGHFVEDLVTCRSKGESSLFSR 647 D G+V+ + L +I + + + E FV+ L R+ + + Sbjct: 513 IDLCTELGMVSTQFMKLPSIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAIYNPKIPNT 572 Query: 648 DQVDYMD------VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 ++ Y D + ++ +I + H + ++ + D Sbjct: 573 LEIGYCDGYLQDGYHALYLNNLPGQMIRPVIHRATGNIVNIGPYEQVFLDIKCGDSIEGM 632 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 E S + +++ + + ++ + + +M G I L+ RS+ Sbjct: 633 NNAEYE--EISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMG--IPALSNKYRSDT 688 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTD---LGELALGQNMRVAFMPWNGYNFEDSILV 818 P + + E G N VA + + GY+ ED++++ Sbjct: 689 KLLWLHYPQ----------RSICQCALMEPFGFNEYPTGANAIVAVISYTGYDMEDALII 738 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 + ++ + E + I + GE LD+ G+ G Sbjct: 739 KKSAIERGFGHGSQYKAYKVDFEKEGEKNEMFS-GITSSGEIFDEHLDDDGLPRPGEIFE 797 Query: 879 GG------DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 D + GK+ K + +R + G+ ++ VI + Sbjct: 798 NSPIYSHIDKITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQKAVVRVRYNRTPVIGDK 857 Query: 933 VFTRDGVE 940 +R G + Sbjct: 858 FSSRHGQK 865 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 56/426 (13%), Positives = 132/426 (30%), Gaps = 67/426 (15%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD- 81 ++ L +SF F+E+ E L+ + + + EL + +P ++ Sbjct: 10 ELKELTRAHTESFNYFLEKGKEDI--LKYMKKYKIIKKDSTELMELSCTGISIEKPRYNG 67 Query: 82 ----VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD----- 132 C+ +TYS +R+ + + E EV GEIP+M Sbjct: 68 LPLFPYMCRSAALTYSGKIRLTITIKENETSKTI---------EVDGGEIPIMVGTSKCW 118 Query: 133 ---------------------NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 G F+ING ER + + + + + ++ Sbjct: 119 IGSEYITPEERINIREDPHEIGGYFIINGIER-YLRMIVYAKANHPLAVIRPSWTNKGAH 177 Query: 172 YNARIIPYRGSWLDFEF----------DPKDNLFVRIDRRRKLPATIILRAL-NYTTEQI 220 + I R D F+ + +P ++LR + +I Sbjct: 178 FTKYGIIIRCMREDITTLTNTLHFLDNGKVTLRFIFKKQEFFIPVVLLLRVYGGMSDREI 237 Query: 221 LDLFFEKVIFEIRDNKLQMELVPERLRGET--ASFDIEANGKVYVEKGRRITARHIRQLE 278 +L +N + +R E + +V G + Sbjct: 238 FELI----TMNNYENSNLVNAAEMLVRRENGSPLNGLNTPEQVLSYIGSKFRLIMDSTEG 293 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 +D++L + +E ++ +L+ +L + ++ + G + Sbjct: 294 VNDIELGKRVLEEFCLVHLSSY---SEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGV 350 Query: 339 NDLDHGPYISETLRVDPTNDRLS-ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 H + +T+ + + LS A + I + ++ + ++ + + + + Sbjct: 351 LLPGH---LYQTVIKEEIQNILSKARLFILKDLKDVKKGSKITERVYLQRILSNVAKSFG 407 Query: 398 SAVGRM 403 + + Sbjct: 408 TRIKSF 413 >UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus RepID=A4RSZ5_OSTLU Length = 1145 Score = 274 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 101/492 (20%), Positives = 163/492 (33%), Gaps = 91/492 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS----GTVIDVQVFTRDGVEKDK 943 TP + KL R + + + GT V V G + + Sbjct: 708 TPMHTICYRSDTKLYR--LHTPQRPLALTCTYDKYSLDDYALGTNAVVAVIAYTGYDMED 765 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK--LDKLPRDRWLELG 1001 I + + L G+ + +E LD + + Sbjct: 766 A--MIVNKGSLHRGFAHATLYKTLVEGISANETLSRRDNTYTSENKQLDGTGSVQLGSIV 823 Query: 1002 LTDEEKQNQLEQLAEQYDELKH--EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + N + + K A K + L R Sbjct: 824 RPGDTLLNLHSSDGVTKGRSIRLRGTDAAVVDKVVLTQSVKQAATKNDKRAAITLRYDRN 883 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 GDK + RHG KGV+S + P EDMP+ + G D+++NP PSRM IG ++E+ Sbjct: 884 PVIGDKFSSRHGQKGVLSFLWPEEDMPFSDRTGLRPDVIINPHAFPSRMTIGMLVESLAA 943 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 A GA D + F + Sbjct: 944 KA-------------------------------GASTGIFADATPFKHSDK--------- 963 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 + + E +LL+ G RL +G TGE F + +G +Y +L H+ Sbjct: 964 ---------EISPTEEYGKLLRESGYNFCGSERLVNGCTGESFSVDIFIGLVYYQRLRHM 1014 Query: 1239 VD--DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 V H RSTG + +T QP+ G+ GG RFGEME +L A+G AY L +L + SD Sbjct: 1015 VSLFHTFHVRSTGPNNPLTMQPIKGRKSGGGIRFGEMERDSLLAHGVAY-LVSLLHICSD 1073 Query: 1297 D--------------------------VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 + + R + + +P F L E+ Sbjct: 1074 NRDAWVCNMCGSLIAPLTCVASIRTDEYSSRRTSCRVCDSAHKLERISIPHVFIYLTAEL 1133 Query: 1331 RSLGINIELEDE 1342 ++ I+++++ + Sbjct: 1134 AAMNISVQVKAK 1145 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 111/731 (15%), Positives = 221/731 (30%), Gaps = 110/731 (15%) Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 ++ E+ + L +G D + ++ AL + + Sbjct: 262 VCSDAEMYRQVCLHLRSAGTDETFI-----EDRLALLQRECHELQIRTQMCALSYLGQHF 316 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 R + + ++ F + Y +I ++ Sbjct: 317 RTLLDLSSDESDISVGERFLEDFIY-----------------VHLQHNGDKLSLLILMLS 359 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE----NQFRVGLVRVERAVKERLSLGDLDT 486 KL+ I G+ DD D L N+ + G + + + R+ +V ++ + G Sbjct: 360 KLLSIVTGRCSPDDPDSLVNQEVLVPGLLLQAMIREKVRIAFQKVVTHLRR--TQGSWSE 417 Query: 487 LMPQDMIN---AKPISAAVKEFFGSSQL--------SQ------FMDQNNPLSEITHKRR 529 +IN + + V+ F + L SQ ++ N I+H R Sbjct: 418 ETISHLINESGSSDVGKVVEYFLATGNLVSPTGLGLSQTSGFTIVAEKLNYFRYISHFR- 476 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 ++ G E VR + P +G +CP+ TP+G GL+N L+ + +T Sbjct: 477 --SVHRGAYFMELRTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAEMCEIVM---PDT 531 Query: 590 PYRKVTDGVVTDEIHYLSA-IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 + ++ A I Y A+ + EG FV ++ + R Sbjct: 532 DHVFQQKRLLQIHSVLDRALISVEQYDCGYAHVPVVLEGSFVG-YISAENASHVISALRA 590 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK---PLVGT--- 702 + S ++ + + P EH + R P + + +GT Sbjct: 591 FKVTLTTSVLRMSEISY-IHPGGEHGLFPGLYIFYGPSRLMRPVKQVESMKVEFIGTLEQ 649 Query: 703 --------GMERAVAVDSGVTAV-----AKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 +E A + + + + D ++ + + +M G Sbjct: 650 AFLSISAHQVESHNASYTHAEIRNTSALSCVASLTPWSDFNQSPRNMYQCQMAKQTMGTP 709 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 ++ + RS+ P L D + ALG N VA + + G Sbjct: 710 MHTICY--RSDTKLYRLHTPQRPLALTCTYDKYSLD-------DYALGTNAVVAVIAYTG 760 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQEL-ACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 Y+ ED+++V++ + + L +S + L + T N +LD + Sbjct: 761 YDMEDAMIVNKGSLHRGFAHATLYKTLVEGISANETLSRRDNTYTSEN------KQLDGT 814 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 G V +G+ V GD L+ K S+R+ + V Sbjct: 815 GSVQLGSIVRPGDTLLN--------------------LHSSDGVTKGRSIRLRGTDAAVV 854 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 V + K + ++ G + + + Sbjct: 855 DKVVLTQSVKQAATKNDKRAAITLRYDRNPVIGDKFS-SRHGQKGVLSFLWPEEDMPFSD 913 Query: 989 LDKLPRDRWLE 999 L D + Sbjct: 914 RTGLRPDVIIN 924 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 52/332 (15%), Positives = 100/332 (30%), Gaps = 67/332 (20%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS----GNSELQYVS 72 P + + L + +DSF G + R V P + L Sbjct: 29 SVPSEVPIKKLFACHVDSFNHL------TNLGFDQILRCVKPEKFQQSAGCPELMLWLED 82 Query: 73 YRLGEPVF------------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +L F + C+ G +Y APL V+ I ++++ + Sbjct: 83 LKLESLKFRHRISGRTESQKTPRGCREGGESYKAPLSVQFCWQI--------DGENVQRR 134 Query: 121 EVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVF 156 V +G+ P+M + G F+ING ER ++ + + Sbjct: 135 VVNLGDCPVMVKSDVCSLALLSPAQLVARGEEAHEAGGYFIINGIER-MIRMIIQQRRHH 193 Query: 157 FDSDKGKTHSSGKVLYN--ARIIP-----YRGSWLDFEFDPKDNL---FVRIDRRRKLPA 206 + + L++ A +I S + + L + +PA Sbjct: 194 ILGLCRRAFTKRSPLFSEFATVIRCVTEDEHSSIVRLHYMRTGALRLALQHRRQEFFIPA 253 Query: 207 TIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 I+LRAL + ++ + D +E L+ E I Sbjct: 254 GIVLRALAVCSDAEMYRQVCLHLRSAGTDETF-IEDRLALLQRECHELQIRTQMCALSYL 312 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 G+ ++ D+ + E +E + Sbjct: 313 GQHFRTLLDLSSDESDISVGERFLEDFIYVHL 344 >UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Isoetes sp. JL-2005 RepID=Q1L6W4_9TRAC Length = 623 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 83/419 (19%), Positives = 140/419 (33%), Gaps = 80/419 (19%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 V+ + ++ ++ M + L+ F V G + Sbjct: 262 VLSDTGYNQEDSIILNQSSLDRGMFRSMHFHTHKDALKPTLDQRFGEPSESDVGGYKKQS 321 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQL-------AEQYDELKHEFEKKLEAKRRKITQGD 1040 +KL D +G + +L E K + ++ + I + Sbjct: 322 HYEKLDSDGLPHVGAALSSSDVIIGKLFTAGADVREVDASQKLKHTERGRVDQVVIAAKN 381 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 D VKV L R Q GDK + HG KGV+ ED+P+ +G D+++NP Sbjct: 382 DAETD----VKVRLRECRTPQVGDKFSSMHGQKGVVGMCFHQEDLPFTRDGIVPDLIINP 437 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 P+R +G + + + V+ + Sbjct: 438 HAFPTRQT---------------LGQLMECLAGKAAAVSAREQ----------------- 465 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 F E L +G +Y GR G + Sbjct: 466 ----------------------DATPFVERSLPRFSEELHKAGFQRTGMECMYSGRVGTR 503 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + V +G + +L H+ +DKM R TGS +T+QP+ + + GG RFGEME + A Sbjct: 504 MKVRVNIGVTFYQRLTHMAEDKMKYRRTGSVHPLTRQPIVDRKRHGGIRFGEMERDCMIA 563 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKM---------------YKNIVDGNHQMEPGMPESFN 1324 +GA+ TLQE L + SD + G++ + +P + N Sbjct: 564 HGASATLQERLFLLSDPYVMYICTKCRRTASVEQNKVPRCRFCKCGSNIVRVNVPYACN 622 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 84/466 (18%), Positives = 152/466 (32%), Gaps = 61/466 (13%) Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS 621 TP+G N GL+ S++V+A LETP + + D ++ + + G V N Sbjct: 1 STPDGENCGLVKSMAVFAIVT----LETPEQPILDALLGHMMPPEAVFPLGELVKVFLNG 56 Query: 622 NL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 D E + + R G + + + S L+ L D + Sbjct: 57 KWVGITDAENDLEQYVKRKRRGGGLDYQAIC----LRGKEINIFSDAGRLLRPLFIVDND 112 Query: 678 RALMGANMQRQAVPTLRADKPL---VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 + + + V G+ V + A G +Q + R Sbjct: 113 ELCI-TKEHLFELRRKKPQDGFEYLVKEGVIEFVGAEEEY--RASIAGSIQDLKRPRSHH 169 Query: 735 -KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ----MPCVSLGEPVERGDVLADGPS- 788 + E+ P + + NQ++ + Q ++G V D S Sbjct: 170 VRYTHMELRPASLLAIGAFVIPFVNHNQSSRVMQQSRKHCRQAIGFNCSNLRVRCDTTSH 229 Query: 789 -----------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 EL GQN VA + GYN EDSI++++ + F ++ Sbjct: 230 ELLYPQRPLVRTQAMTLIGRPELHNGQNPIVAVLSDTGYNQEDSIILNQSSLDRGMFRSM 289 Query: 832 HIQELACVSR---DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 H + D + G + ++ KLD G+ ++GA ++ D+++GK+ Sbjct: 290 HFHTHKDALKPTLDQRFGEPSESDVGGYKKQSHYEKLDSDGLPHVGAALSSSDVIIGKLF 349 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 G +V D+S ++ + G V V + ++ E D + Sbjct: 350 TA----------------GADVREV-DASQKLKHTERGRVDQVVIAAKNDAETDVKVRLR 392 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 E + K S Q G+ + L P Sbjct: 393 ECRTPQVGDKFSSMHGQKGVVGMCFHQEDLPFTRDGIVPDLIINPH 438 >UniRef50_Q0CKF7 DNA-directed RNA polymerase I polypeptide 2 n=3 Tax=Trichocomaceae RepID=Q0CKF7_ASPTN Length = 1205 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 122/1011 (12%), Positives = 300/1011 (29%), Gaps = 159/1011 (15%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDV 82 + + +DSF + L+ ++ GEP Sbjct: 35 SLADAIKPHVDSFNALFDGSKVLDAALKDIGTKT-------------FID---GEPE-TP 77 Query: 83 QECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTE 142 ++ + R R P+ +++ +EV++ + P + + F Sbjct: 78 EQKKAR--------------QAEGRRPPKRNRLNVRIREVFL-DRPAIPPSNKFTT---- 118 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR-IDRR 201 R+ ++ + + + L E+ + +V + Sbjct: 119 --------RNRNIYPSECRERHATYRGKL-----------RARLEYQVNNGDWVESVREL 159 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM---ELVPERLRGETASFDIEAN 258 ++P + + +L K E + E + L +F + Sbjct: 160 GQVPIMLRTNRCHLEKATPEELVQHKEESEELGGYFIVNGNEKLIRMLVVGKRNFPMAII 219 Query: 259 GKVYVEKGRRITARHIR------QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 +V++G T I+ L + + + + +I Sbjct: 220 RGSFVKRGHTYTKYGIQIRSVRPDQTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMILK 279 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 A +E + + + T D + T + + R S + +P Sbjct: 280 ALVETNDREIFEGLVGNASSEGINNTFVTDRVELLLRTYKGYNVHTRSSCRAYLGEKFKP 339 Query: 373 --GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 G P ++ E L + L +G + E I+ +++ Sbjct: 340 VLGVPSDMSNEDAGTEFL----RKVVLPHLG--------NQNVTETQDYDKFKMIMFMIR 387 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEM----AENQFRVGLVRVERAVKERLSLGDLDT 486 KL + G D+ D + N+ I G + + + + +++ + + Sbjct: 388 KLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERLEEWVRSFGPILRDWSNRNNGAK 447 Query: 487 LM--------PQDMINAKP--ISAAVKEFFGSSQLSQ--------------FMDQNNPLS 522 ++ + +A++ F + L ++ N Sbjct: 448 FTDPAFERDFLSKIVKRSNENLGSALEYFLSTGNLVSPTGLDLQQASGYTVMAEKINFYR 507 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 I+H R I G + VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 508 FISHFRMI---HRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGAPCGLLNHLAHKCLIS 564 Query: 583 EYGFLET--PYRKVTDGVVTDEIHYLS---AIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 + P V GV ++ L ++ ++ + + + L + Sbjct: 565 TSDIDVSHLPKLLVQLGVRSESSVSLDESVPVQIDGRIVGYCSPK--QARVVADTLRYWK 622 Query: 638 SKGESSLFSRDQVDYMDVS------TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 ++ ++ Y+ S + S A + +++ ++ ++ + Sbjct: 623 VMEMHNVPKELEIGYVPNSNGGQYPGIYIFSQAARMFRPVKYLLLDKLDYVGPFEQPFLE 682 Query: 692 TLRADKPL---VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 + L V T +E + ++ + + D ++ + + +M G Sbjct: 683 IACLPEDLIPGVSTHIEF-----TPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGT 737 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 + R++ Q + P L + D G N VA + + Sbjct: 738 PGTAIDY--RTDNKLYRLQTGQTPIVRP-----PLYNAYGLDN--FPNGTNAVVAIISYT 788 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI---------PNVGE 859 GY+ +D++++++ + + D +I + Sbjct: 789 GYDMDDAMIINKSSHERGFGHGTIYKTKIHSLDDKDSRRGRSRREITKLFGFAPGGEIKA 848 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 + LDE G+ +IGA V G + V + + G ++ Sbjct: 849 EWRNSLDEDGLPHIGARVREGSL----VAAWHTVRYDAATDSYVNVDGITHF------IK 898 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 + G + ++V + + +++ ++ ++ + + G Sbjct: 899 YKDAEEGYIDSIRVMGAETGVEPCQSISVKYRVPRKPVIGDKFSSRHGQKG 949 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 76/396 (19%), Positives = 128/396 (32%), Gaps = 99/396 (25%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + E+ I + ++ S + +++ G ++AE Sbjct: 792 MDDAMIINKSSHERGFGHGTIYKTKIHSLDDKDSRRGRSRRE--ITKLFGFAPGGEIKAE 849 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF-------------EKKLEAKRR 1034 + L D +G E +YD + + + Sbjct: 850 WRNSLDEDGLPHIGARVREGSLVAAWHTVRYDAATDSYVNVDGITHFIKYKDAEEGYIDS 909 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 G + + + V V R+ GDK + RHG KG Sbjct: 910 IRVMGAETGVEPCQSISVKYRVPRKPVIGDKFSSRHGQKG-------------------- 949 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 M I Q++E+ G A G Sbjct: 950 ------------MTIAQMIESMAGKAGALHGHP--------------------------- 970 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 D + F E + E L+ G LY Sbjct: 971 ----QDSTPFQFSE-------------------ENTATDYFGEQLRKAGYNYYGNEPLYS 1007 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 G TG++F + +G ++ +L H+V+DK R+TG + +T QP+ G+A+ GG R GEME Sbjct: 1008 GITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNSLTGQPVKGRAKGGGIRVGEME 1067 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 +L A+GAA+ LQ+ L SD R + ++ Sbjct: 1068 RDSLIAHGAAFILQDRLMNCSD--TQRAWICRDCGS 1101 >UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=C5YHJ3_SORBI Length = 1251 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 145/1054 (13%), Positives = 291/1054 (27%), Gaps = 209/1054 (19%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGN--------SE 67 L+S Q++S+ +F+ GL+ F S+ I Y + + Sbjct: 116 RSFFSATGLVSHQINSYNQFVSH------GLQDLFDSLGEITVEPDYDPSNKSGAWKHAT 169 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 +++ L EPVF V L L + + + Sbjct: 170 IKFGRVELSEPVFMVD---------------NLDLEQQDLKFKPRH-----------ARL 203 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 MT + T +V + DK +GK + R + Sbjct: 204 QRMTYASRMNVEMTAQVYI------------LDKSDKAKTGKDTHVHR--------REIM 243 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 + K LP + Q D F+ + + ++ + E+ Sbjct: 244 TETKQVSM------GLLPVMVKSNLCWLHKLQESDCQFDFGGYFLIKGTEKVFIAEEQRF 297 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 + L ++ E I K+V + Sbjct: 298 LSRIWITDYPSWDASY--------------------LSQIKREKINIKLVPSKRNESCKV 337 Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS------ 361 I + + ++ + + LD I + Sbjct: 338 ITIYFMGTIIPIWVVFFALGVSSDKEAFDMIDILDCDASIVNIISSTIKESHEEFEGFRA 397 Query: 362 ---ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 A + +++R + P +E+ + F S Sbjct: 398 PGRACQYVDKLIRKSKFPPKESFDEYVCRYMFPSVNGVRS-------------------- 437 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 + ++K L+ +G + D+ D N+R+ ++ + + R E + + Sbjct: 438 --KALFLGYMVKCLLMAYSGNRKCDNKDDFRNKRLGLACQLLRRELWTHIKRAEWRMVKL 495 Query: 479 LSLGDLDTLMPQDM---INAKPISAAVKEFFGSSQLSQ------------FMDQNNPLSE 523 + + QD+ ++A I+ + F + + + NPL Sbjct: 496 MQRDLSNDGNLQDLRRYVDASIITNGLNRAFSTGSWRHPYLKARCSGVVATLRRTNPLQM 555 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ++ R+ + A + R +P+ +G++C + TP+G G + +L+V A Sbjct: 556 MSDLRK----TRQWVAYSGAVGDARYPNPSFWGKLCFLSTPDGEKCGFVKNLAVTAV--V 609 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 + P ++ +S + N +L +L S Sbjct: 610 SSVVRKPLIDTFVSCGMKKLDDISLQDISGKDRIFLNGSLLGVCADPHELTLRLRSLRRS 669 Query: 644 LFSRDQVDYMDVS---TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 QV+ +V+ ++ L + R + + L + Sbjct: 670 KLIDPQVEIKRDKHHKEVRVLCDPGRILRPLLVVENLRRITRPKDGLYSFQELIDQNIVE 729 Query: 701 GTGMERAVAVDSGVTAVAKRGG-------------------------VVQYVDASRIVIK 735 G+E + G ++ + + Sbjct: 730 LIGVEEEEDIQCASGIRHLFSGEKEDRSSGYTHCELDPSFLLGLSCSLIPFANHDNGKRV 789 Query: 736 VNEDEMYPGEAGIDIYNLTKYTRSN---QNTCINQMPCVSLGEPVERGDVLADGP----- 787 + + E I +TR + Q P V G A+ Sbjct: 790 LMQAEKISQ-QAIGYSPTNSHTRLDTLSHQIFYPQRPLFKT--VVSYGLGKAETAYSFGR 846 Query: 788 --STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 + E GQN V+ G+N EDS++++ ++ F T+H++ + ++ Sbjct: 847 KDDFNTPEYFNGQNAIVSINVHQGFNQEDSLVLNRASLERGMFRTLHLKSYKAQVENKEI 906 Query: 846 G-----PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 E I + LD G+ Y+GA + GDI++GKV+ GE Sbjct: 907 TRRLKHRESINFGKVQSKRGKVDSLDSEGLPYVGASLQSGDIVIGKVSESGE-------- 958 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 D S ++ + G V V + D + K Sbjct: 959 --------------DHSAKLMHTEKGMVDKVVLSANDDGVNFATVTLRQSRSPCVGDKFA 1004 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 S Q GL + P Sbjct: 1005 SMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPH 1038 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 93/437 (21%), Positives = 153/437 (35%), Gaps = 86/437 (19%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE--AEKLDK 991 F ++ RA M K +++ E + R + G V+ K+D Sbjct: 871 FNQEDSLVLNRASLERGMFRTLHLKSYKAQVENKEITRRLKHRESINFGKVQSKRGKVDS 930 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 L + +G + + + +++E + K +K + ++ DD + Sbjct: 931 LDSEGLPYVGASLQSGDIVIGKVSESGEDHSAKLMHTEKGMVDKVVLSANDD----GVNF 986 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V L R GDK A HG KGV+ ++ E+ P+ G DIV+NP G P+R Sbjct: 987 ATVTLRQSRSPCVGDKFASMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPHGFPTRQTP 1046 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+LE LG G A V + E + +A Sbjct: 1047 GQLLEAALGKGIAMGGKVRYATPFTTPTVDVITEQLHKAGFSRWGE-------------- 1092 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 V +G +K L V +G Sbjct: 1093 --------------ESVLNGQTGERMKSL--------------------------VFMGP 1112 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 + +L H+ +DK+ R+TG VT+QP+ K +FGG +FGEME + A+GAA L E Sbjct: 1113 TFYQRLVHMAEDKVKFRNTGPVHPVTRQPVEDKKRFGGVKFGEMERDCMLAHGAAANLHE 1172 Query: 1290 MLTVKSD----DVNGRTK--------------------MYKNIVDGNHQMEPGMPESFNV 1325 L SD + + + +P + Sbjct: 1173 RLFTLSDFSQMHICQACQRVANVIMRPAEGGSKKVHGPYCMFCRSAERIVRVNVPYGSKL 1232 Query: 1326 LLKEIRSLGINIELEDE 1342 L +E+ +GI ++ + E Sbjct: 1233 LYQELFCMGICLKFDTE 1249 >UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium tetraurelia RepID=A0BY74_PARTE Length = 1115 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 86/447 (19%), Positives = 147/447 (32%), Gaps = 99/447 (22%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG---LFSRIRAVLVAGGV 984 + D + + E+ I + D + ++L L+++I++ + + Sbjct: 729 MEDAMILCKSSYERGFGHGIIYKSSEYSLNDDKEVKYKLLSQIPVQLYNQIKSQIPVNLL 788 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 ++ L + Q Q ++ D E+ + + Sbjct: 789 PYGLPEQSQVVTKGTAVLALYDSQLQQVKVHHSKDSETARIEQVAVVNKSENDVS----- 843 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 V + + R GDK + RHG KGV+S + P DMP+ E+G DI++NP Sbjct: 844 -----VMIKYRINRNPIIGDKFSSRHGQKGVMSLLWPQIDMPFSESGMVPDIIINP---- 894 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 H + IG I +M Sbjct: 895 -----------HAFPSRMTIGMLIESM--------------------------------- 910 Query: 1165 SDEEVMRLAENLRKGMPIATPVF----DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 N+ +G T F + + L G LY G G Sbjct: 911 ------AAKANVLQGEMFETHPFQNYENDNVVDYFGKQLIKHGYNYHGNETLYSGIYGTP 964 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + + G +Y +L H+V DK ARS G ++TQQP+ G+ + GG R GEME AL A Sbjct: 965 LKVDIYFGVVYYQRLRHMVSDKSQARSMGPVDVLTQQPIKGRKKGGGIRLGEMERDALIA 1024 Query: 1281 YGAAYTLQEMLTVKSD----DVNGRTKM------------------------YKNIVDGN 1312 +G AY + + L SD + + Y Sbjct: 1025 HGVAYCINDRLLKCSDYSETYICDKCGNMLATYQFVQLLSLENIQSVQSSHPYCVRCKQA 1084 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIEL 1339 + +P L+ E+ ++ + +E Sbjct: 1085 KCSKVAIPFVLRYLVNELAAMNVKLEF 1111 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 103/743 (13%), Positives = 231/743 (31%), Gaps = 90/743 (12%) Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 E D VR+ +P + + + +L ++ + + + Sbjct: 101 EIDDNPKETVRLSLGE-IPILVKSQKCHLNGLSAEELVQQQEDCNEFGGYFIINGNEKII 159 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 R I+ K + ++ + + Y+ + Sbjct: 160 RM----LIIQKRNYPIAFKRPGYKNKGFN--FSPYAVQMKCVRSDQYARTITLHYLMDGN 213 Query: 307 GEL-ICAANMELSLDLLAKLSQSGHKRIETLF----------TNDLDHGPYISETLRVDP 355 L I EL + ++ L ++ ++ D + + Sbjct: 214 VYLRIILKKKELQMPVIILLRALTDMNDYQIYQQIVRSQADKSDISDRVEVMIADAKSRG 273 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 N + AL I R++R E F+ + DL VGR+ + Sbjct: 274 INTQKDALEYIGRLLR-------------VELNIFNPETTDL-QVGRIFLREHICVH--L 317 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + ++ ++KL + + D++D L N+ + G + R L + V Sbjct: 318 DNDQDKASILLLCIEKLYALFIDEINPDNLDSLVNQEVLLSGHLYTAYLREKLEDLLVGV 377 Query: 476 KER-LSLGDLDTLMPQDMINAK-------PISAAVKEFFGSSQL-SQ------------- 513 +E+ L + +D+ K + ++ F + L SQ Sbjct: 378 REKILKDATKEQSKLKDLAYFKRCFDLQTTVGEKLENFLATGNLRSQTGLDLMEASGFTI 437 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 D+ N + ++H R ++ G + VR + P +G VCP+ TP+G GL+N Sbjct: 438 IADKLNNMRFLSHFR---SVHRGSYFAQMKTTTVRKLLPDVWGFVCPVHTPDGGPCGLLN 494 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE-----GNYVIAQANSNLDEEGH 628 +++ + E ++ + + + + +I NS+L Sbjct: 495 HITMSCVPLTHP-DEQDIEELLFPLGVQSQRLIYSKNDLPVVLNGKLIGYLNSSLLP--T 551 Query: 629 FVEDLVTCRSKGESSLFS-----RDQVDYMDVST-QQVVSVGASLIPFLEHDDANRALMG 682 F + +S G + Q + + + + A L+ + + N Sbjct: 552 FEHTIRVYKSNGTIKETTEVACLPRQENKSPLFPGIYINTTVARLMRPVINLKLNTIEWI 611 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 + +++ + + + + ++ V +++ ++ + + +M Sbjct: 612 SPLEQINMSIACTQADIRTDTQYQEIDP---AYILSILASNVPFLNYNQSPRNMYQCQMA 668 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 G +N R + P + D + A G N V Sbjct: 669 KQTMGSPCHNYPY--RFDNKMYRILFPQKPVVRCFGYDDY-------QFADYASGTNAIV 719 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 A + + GY+ ED++++ + + I + D K ++ + IP + Sbjct: 720 AVISYTGYDMEDAMILCKSSYERGFGHGIIYKSSEYSLNDDKEVKYKLLSQIPVQLYNQI 779 Query: 863 S-----KLDESGIVYIGAEVTGG 880 L G+ VT G Sbjct: 780 KSQIPVNLLPYGLPEQSQVVTKG 802 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 56/394 (14%), Positives = 127/394 (32%), Gaps = 80/394 (20%) Query: 29 SIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS----------YSGNSELQYVSYRLGEP 78 ++SF +GL R + PI+ N ++ ++G P Sbjct: 14 KHHIESFNYL------YTHGLVEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMP 67 Query: 79 ---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 +C+ +Y+AP+ + I + + +GEIP+ Sbjct: 68 TQQGMLGDNRVLPTQCRQMKKSYTAPMLATICREIDDNPKETVRLS--------LGEIPI 119 Query: 130 MTDN------------------------GTFVINGTERVIVSQL--HRSPGVFFDSDKGK 163 + + G F+ING E++I + R+ + F K Sbjct: 120 LVKSQKCHLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYK 179 Query: 164 THSSGKVLYNARIIPYRGSW----LDFEFDPKDNLFVRIDRRRK---LPATIILRALNYT 216 Y ++ R + + N+++RI ++K +P I+LRAL Sbjct: 180 NKGFNFSPYAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDM 239 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR- 275 + +++++ D + V E D ++ G + R +R Sbjct: 240 NDY---QIYQQIVRSQADKSDISDRV------EVMIADAKSRGINTQKDALEYIGRLLRV 290 Query: 276 --QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 + + ++V ++ + D+ ++ +L + +++ + Sbjct: 291 ELNIFNPETTDLQVGRIFLREHICVHLDNDQDKASILLLCIEKLYALFIDEINPDNLDSL 350 Query: 334 --ETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 + + + + Y+ E L R L + Sbjct: 351 VNQEVLLSGHLYTAYLREKLEDLLVGVREKILKD 384 >UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Selaginella erythropus RepID=Q1L6V8_9TRAC Length = 593 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 72/363 (19%), Positives = 128/363 (35%), Gaps = 74/363 (20%) Query: 996 RWLELGLTDEEKQNQLEQ--LAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 +G + + L + ++ + +A ++ + V V Sbjct: 286 GLPYIGAKMTAGDVVIGRMALTKPXNKFVDKMSNLEQAWVDQVVC-SMGEEQDQRHVNVR 344 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L R Q GDK + HG KGV+ + ED+ + + G D+++NP PSR Sbjct: 345 LRESRCPQVGDKFSSMHGQKGVVGMMLSQEDLLFTQQGIVPDVIINPHAFPSRQT----- 399 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 + + +++ + + Sbjct: 400 ----------LAQMLESLVGKTAAM----------------------------------- 414 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 G+ + F + ++ + L GQ R+Y G TG T G + Sbjct: 415 -----GLCLGDTPFTHLRAEQLAQKLAKRGFQKWGQDRVYSGCTGRMTGAMATFGLTFYQ 469 Query: 1234 KLNHLVDDKMHARS-TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +LNHL DKM R G +T QP+ + + GG +FGEME L A+GA+ T+QE L Sbjct: 470 RLNHLSRDKMKCRGGNGPVHPLTHQPVKDRRRQGGTKFGEMERDCLVAHGASATVQERLF 529 Query: 1293 VKSD----DVNGRTKM-----------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 + SD V + MP + +L E++++G+++ Sbjct: 530 LVSDKSLVHVCANCCRLASFNSQQQPGCLFCKRXQRPVAVEMPYACKLLRMELQAMGVDM 589 Query: 1338 ELE 1340 Z Sbjct: 590 RFZ 592 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 91/262 (34%), Gaps = 50/262 (19%) Query: 658 QQVVSVGASLIPFLEHDDANRALMGA----NMQRQAVP---------------TLRADKP 698 ++++ G L+ L D R L+ ++ R P ++ Sbjct: 63 IRILTDGGRLLRPLLVVDEQRVLVFMGKHIHLLRAMAPRERFNYMLKSGLVELLGAQEES 122 Query: 699 LVGTGMERAVAVDSGVTAV----------AKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 GM R A S V+ ++D + ++ + + G+ I Sbjct: 123 NAVVGMTRLEAESSRTAFTHLEMHPASFLGLSASVIPFLDHNHSSRVTHQAQKH-GKQAI 181 Query: 749 DIYNLTKYTR--SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 +Y +R + Q P V LA + L G N VA Sbjct: 182 GVYACDNLSRMEPTAHLYYPQKPLVH--------SWLAQHLTCPX--LTNGTNCVVAVAS 231 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 + G+N EDS++V++ V F + H D+K + ++ Sbjct: 232 YGGFNQEDSLIVNQASVDRGLFRSTHFFVKKASL-DSKSSQHFGKSSDSASLDSD----- 285 Query: 867 ESGIVYIGAEVTGGDILVGKVT 888 G+ YIGA++T GD+++G++ Sbjct: 286 --GLPYIGAKMTAGDVVIGRMA 305 >UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F81 Length = 309 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 137/308 (44%), Positives = 204/308 (66%), Gaps = 9/308 (2%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQK---FIEQDPEGQYGLEAAFRSVF 57 M S+TEKK IRK FGK + L +P L+ +Q +S+++ F + E G + F+S+F Sbjct: 1 MQLSFTEKKNIRKSFGKLKESLSIPNLIEVQKNSYKELTEFNTEVTELTKGFDRVFKSIF 60 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTVK 115 PI+ + + L+YVSYRL +P FDV+EC RG+TYS+ L+ LRLV+YE +E + Sbjct: 61 PIEDLNDKATLEYVSYRLEKPKFDVEECIARGLTYSSALKCTLRLVVYEIDQENNTKDIL 120 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 KEQEVYMGE+P+MT++GTF+ NG +RV+V+Q+HRSPGVFFD DKGKTH+SGK+L+N R Sbjct: 121 SAKEQEVYMGEVPMMTNSGTFITNGVQRVVVNQMHRSPGVFFDHDKGKTHASGKLLFNCR 180 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV--IFEIR 233 +IP RGSWLDFE+D KD L+ +IDR++K+ ++ +L AL YT +I+D F+E F+ + Sbjct: 181 VIPNRGSWLDFEYDVKDFLYFKIDRKKKIFSSTLLLALGYTKSEIVDEFYESEQYNFDPK 240 Query: 234 DNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 K + + PE + + S ++ G+V ++ G +I ++L D +K I V E Sbjct: 241 TEKWKTKFNPENYKAKNFSEEVIDAKTGEVVIKLGDKINFLSAKKLANDGLKDILVSRES 300 Query: 292 IAGKVVAK 299 + GK + Sbjct: 301 LFGKFCTE 308 >UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative n=1 Tax=Schistosoma mansoni RepID=C4Q6P1_SCHMA Length = 1155 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 119/757 (15%), Positives = 235/757 (31%), Gaps = 117/757 (15%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM---ELVPERLRGETASFDIEANGK 260 LP ++ RA N ++ + F+ + E V L ++ + + Sbjct: 100 LPIMVMSRACNLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRS 159 Query: 261 VYVEKGRRITAR--HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + ++G T +R + +D+ I + + G+ ++ + + + +S Sbjct: 160 TFKKRGHGYTEHAIVMRCVREDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRVS 219 Query: 319 LDLLAK-LSQSGHKRIETLFTN-DLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 L K I LF + + I L+ D + + AL + Sbjct: 220 FKSLYKTFGNVRTCNISFLFLKFHIRNAMRILIRLKDDEYSSQTRALCYLGG-------- 271 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 LF DR G+ + + S + + ++KKL Sbjct: 272 -------LFRKRMNVPDRLSDEEAGKFLLSEYIAIH--LSSFLDKYHLLCFMIKKLHAFV 322 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI--- 493 +G + D+ + + + R ++ + VKE++ L + + Sbjct: 323 SGLCCEESNDNPMFQEVLLPSTLYLQVLRAKVLHLLANVKEQVLLKSRKQNVRISLSLFH 382 Query: 494 -----NAKPISAAVKEFFGSSQL-------------------SQFMDQNNPLSEITHKRR 529 A +S A+ + L S D N L R Sbjct: 383 QALLSRASEVSTAMVYMVSTGNLPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQFR- 441 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 A+ G E VR + P +G CP+ TP+G GL+N L+ ET Sbjct: 442 --AVHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLA----EPVEAVCET 495 Query: 590 PYRKVTDGVVT-DEIHYLSAIEEGNYVIA----QANSNLDEEGHFVEDL----------V 634 P + V + + H L IE + Q + +G + L + Sbjct: 496 PKQSVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLSTLDEAKRLAL 555 Query: 635 TCR------------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR---- 678 R E +L V + + G+ L+ +++ + Sbjct: 556 ELRNSKVDPNCKNIPHTMEITLVPSTDVG-SQYPGLYLFAGGSRLLRPVKNLQCPKNSAG 614 Query: 679 ----ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 +G Q +++ ++ + ++R+ + + G++ Y D ++ Sbjct: 615 KDVIEWIGTFEQVYLNISVKEEELSERSPIDRSHIEIAPENIFSFVAGLIPYPDFNQSPR 674 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN---QMPCVSLGEPVERGDVLADGPSTDL 791 + + +M G Y RS+ Q P V V+ D+ Sbjct: 675 NMYQCQMAKQTMGHSCYTWR--NRSDAKAYRLFTPQSPLVRTKMYVKY----------DV 722 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV--------SRDT 843 LG N VA M + GY+ ED++++++ + S + Sbjct: 723 DHYPLGFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNN 782 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + + GE LD G +GA + G Sbjct: 783 PFQKKRLVTSEYYFGEKPDKGLDLDGFPPVGARLEPG 819 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 89/473 (18%), Positives = 146/473 (30%), Gaps = 110/473 (23%) Query: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 S + VI+ + R E+ ++ + Q Sbjct: 737 SYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNNPFQK----KRLVTS 792 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + L D + +G E + L + E K E + Sbjct: 793 EYYFGEKPDKG----LDLDGFPPVGARLEPGVSWLYAY--THSETLQTNFIKYEGGEQIA 846 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY-DENGTPVD 1095 G + L + R+ GDK + RHG KG+ S + E+MP+ NG D Sbjct: 847 YVDSISLNGSWSCATITLRLPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPD 906 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 ++ NP G P+RM +G ++E G +A G+ I+A Q E + Sbjct: 907 LIFNPHGFPTRMTMGMMIEFLAGKSAALTGNLIDATPFQWSEDSPPY------------- 953 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 + ++L G + G Sbjct: 954 -------------------------------------EDYCQILTDCGFNHWGTETMMSG 976 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 TG Q E + VG +Y +L H+V DK R+ G + + +QP+ G+ GG R GEME Sbjct: 977 STGRQLEAQIYVGVVYYQRLRHMVADKYQVRAEGRFDPILRQPIKGRKVGGGIRLGEMER 1036 Query: 1276 WALEAYGAAYTLQEMLTVKSDD-------------------------------------- 1297 L ++G ++LQ+ L + D Sbjct: 1037 DCLLSHGLVFSLQDRLVDSNCDKVKMLACSKCGGLTHSDLARNITNTSVNQITSNNSSSF 1096 Query: 1298 VNGRTKMYKNIVDGN-----------HQMEPGMPESFNVLLKEIRSLGINIEL 1339 V G + + D + + SF L E+ L + L Sbjct: 1097 VPGTNRWCCRLCDSDSSDCVSRDRDNSLKYVKVSASFRYLTYELACLNVKTRL 1149 >UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=Eukaryota RepID=Q2I5U5_BATDE Length = 1202 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 125/723 (17%), Positives = 225/723 (31%), Gaps = 140/723 (19%) Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 CP ETPEG GL+ +LS+ G P + + + + +S Sbjct: 609 CPAETPEGQACGLVKNLSLMGYITV-GSPAPPILEFLEEWTMESLEEISPSTIPTATKIF 667 Query: 619 ANSNLDEEGHFVEDLVT-CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 N + LV+ R S S + DV Sbjct: 668 LNGQWVGIHRDPDQLVSTLRRLRRSVDVSPEVSVVRDV-------------------RDR 708 Query: 678 RALMGANMQRQAVPT--LRADKPLVGTG-MERAVAVDSGVTAVAKRGGVVQYVDASR--- 731 + + R A + ++ LV T M + + D GVV+Y+D Sbjct: 709 ELRLCTDAGRIARSLFVVTPEQSLVLTKEMVQQLHEDQIQWKDLLSYGVVEYIDTEEEET 768 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 ++I + D++ + R T + V PS L Sbjct: 769 VMICMTPDDLAEARMAAAGQVV---ERHQVGTGRLKSATVYTRNYTHC----EIHPSMIL 821 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF----TTIHIQELACVSRDTKLGP 847 G + + +P+ +N S R V + + + R + Sbjct: 822 G-------ICASIIPFPDHNQ------SPRSVYQSAMGKQAMGLFLTNF--QLRMDTMSN 866 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 P A+ L + AI Sbjct: 867 ILFYPQKPLATTRAMEF-------------------------MHFRDLPAGINAVVAIAC 901 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQIL 967 + +D SL + + ++ R ++++K+ I L++ +D + L Sbjct: 902 YSGYNQED-SLIMNQSSIDRGLFRSLYYRVYMDQEKKVGMISTETLEKPSRDTTLR---L 957 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 + G + ++ + + + + + + E + ++ + + Sbjct: 958 KHGTYEKLEDDGLIAPGVRVSGEDIIIGKTVPIAADSTELGQRTTMHTKRDASTPLKSTE 1017 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + IT D K VKV + R GDK A RHG KG + EDMP+ Sbjct: 1018 NGIVDQVLITTNQD----GFKFVKVRVRSIRIPHMGDKFASRHGQKGTVGITYRTEDMPF 1073 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 +G D+++NP +PSRM IG ++E L + GD+ +A V + + +Q Sbjct: 1074 TADGITPDLIINPHAIPSRMTIGHLVECLLSKVSTFTGDEGDATPFTDVTVEAISQALQG 1133 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + N G + V+ Sbjct: 1134 YG---------------YQRRGFEVLYNGHTGRKLNAQVYT------------------- 1159 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G Y +L H+VDDK+H+R+ G ++T+QP+ G+++ GG Sbjct: 1160 --------------------GPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGG 1199 Query: 1268 QRF 1270 RF Sbjct: 1200 LRF 1202 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 24/154 (15%) Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFG 507 +R+ G + FR+ ++ + V L + + + I+ K Sbjct: 1 KKRLDLAGPLLGGLFRMLFRKLTKDVSRYLQITMESGREFNLSLAVKSSTITNGPKYSLA 60 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR++ + R+ + R +H TH Sbjct: 61 TGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRLNT----PIGRDGKLAKPRQLHNTH 116 Query: 555 YGRVCPIETPE-----GPNIGLINSLSVYAQTNE 583 +G VC E G ++ L+ L A + Sbjct: 117 WGMVCLSGDTEVVLGNGMDVVLLTDLVDGACVST 150 >UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=Pseudomonas mendocina RepID=Q5ZH39_PSEME Length = 382 Score = 262 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 172/230 (74%), Positives = 197/230 (85%) Query: 622 NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 +EG +++LV R E ++ + + V MDVS +QVVSV ASLIPFLEHDDANRALM Sbjct: 152 PERQEGQLIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALM 211 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 G+NMQRQAVPTLRADKPLVGTGMER VA DSGV VA+RGGV+ VDASRIV++VN+DE+ Sbjct: 212 GSNMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVNDDEV 271 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 GEAG+DIYNLTKYTRSNQNTCINQ P VS G+ V RGD++ADGPSTD+GELALGQNMR Sbjct: 272 ETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDQVSRGDIMADGPSTDMGELALGQNMR 331 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 VAFMPWNG+NFEDSI +SERVVQEDRFTTIHIQEL CV+RDTKLGPEEI+ Sbjct: 332 VAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEIS 381 >UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunaliella salina RepID=D0FY17_DUNSA Length = 916 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 125/260 (48%), Positives = 176/260 (67%), Gaps = 2/260 (0%) Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ++ L L +IN K ++A++EFFG+S LSQFMDQ NPL+E+THKRR+S++GPG Sbjct: 655 KKDISQQLKGLTSSSIINNKAFNSAIREFFGTSPLSQFMDQINPLAELTHKRRLSSMGPG 714 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 G+TR+ A +R +HPTHYGR+CPIETPEG N GL+NS++ YA+ N G LE+P+ KV Sbjct: 715 GVTRDTATLAIRGIHPTHYGRICPIETPEGKNTGLVNSMTTYARVNSSGILESPFYKVYK 774 Query: 597 GVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 G V ++YL+A +E +A A+ + G + ++ R + SR V Y+ Sbjct: 775 GQVQKNTGMYYLNAEQEEKIKLAAADLYVSPIGFLPKAMIPARIAETFTKISRSSVQYIG 834 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS Q++S+ ASLIPFLEHDDANRALMG+NMQRQAVP +R ++P+VGTG+E DSG Sbjct: 835 VSPLQMISIAASLIPFLEHDDANRALMGSNMQRQAVPLIRHERPIVGTGLEGRAVSDSGH 894 Query: 715 TAVAKRGGVVQYVDASRIVI 734 ++ G+V YV A +I++ Sbjct: 895 VIQSRYSGLVTYVSAKKIIV 914 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 148/380 (38%), Gaps = 43/380 (11%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 + +++Q SF + +E+ GL F PI + + + Y L P + Sbjct: 8 LSDFVTVQRQSFFELLEK------GLIEEFAKRNPITNGRKDYSFFFYPEYYILTRPEYK 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 E ++ +Y++ L V +++ + K I + VY+G IPLMT G F++NG Sbjct: 62 PHEAILKNKSYTSKLFVPVQITNKKH-------KQIVLKWVYIGNIPLMTKRGHFILNGA 114 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGK-----------------------VLYNARIIP 178 RVIV+Q+ RSPG+++ + + K + +I Sbjct: 115 ARVIVNQILRSPGIYYQQKIYENYEDNKGSKSNAQDDETGEGSSLQPVNTYKRFYCDLIC 174 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE--KVIFEIRDNK 236 RGSWL E D + N++ ++ + K+P L A+ + + IL + KV+ + NK Sbjct: 175 MRGSWLRIEMDKEKNIWAQMKKGPKIPIYWFLLAMGLSEKVILKSIMDPQKVLGNLERNK 234 Query: 237 LQMELVPERLR-GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +L + + TA ++A+ + + + L D K Sbjct: 235 AVPKLSKKNKKDLTTARSAMQADETLKSTGEDKKNLEIKQDLIVADSLNESNSQTDKTTK 294 Query: 296 VVA-KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + ++ + + G L + + L++ + F+N +I E Sbjct: 295 LFWPEETREGTKGALTGFPHDLKNEGEENSLNKINEVNFVSEFSNKSVKNDFIEEDNEKA 354 Query: 355 -PTNDRLSALVEIYRMMRPG 373 TN S+ + Y ++ Sbjct: 355 IKTNASTSSKKQNYPYLKNT 374 >UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious spleen and kidney necrosis virus RepID=Q5YF54_ISKNV Length = 1053 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 114/308 (37%), Gaps = 67/308 (21%) Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 K VK+ L R + GDK A KG + DMP+ +G D+V+NP Sbjct: 803 ADGCKCVKIKLRKIRIPEMGDKFASFTAQKGTCGMMYDQWDMPFTADGVVPDLVINPHAF 862 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM + +L+ + A G Sbjct: 863 PSRMTVHYLLQMCFELGAVAGG-------------------------------------- 884 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 G F+ +K L+ + +Y GRTG +FE Sbjct: 885 ---------------GKGYDATAFNSDGTDLLKT-LEELGYA---KQVMYCGRTGRRFES 925 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V + KL HLV +K+HAR+TG +T+QP+ G+++ GG + GEME W ++GA Sbjct: 926 LVFMAPCPYQKLKHLVANKVHARTTGPVDPLTRQPVAGRSRDGGIKIGEMEQWCKISHGA 985 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKNI----------VDGNHQMEPGMPESFNVLLKEIRSL 1333 A L E +T SD ++ MP + + +++ S+ Sbjct: 986 AAALHESMTTMSDPYTVPVCSVCHVMTDSYKVCRHCRSVSVQSYAMPYTSKLFFQQLASI 1045 Query: 1334 GINIELED 1341 GI + D Sbjct: 1046 GIKTCIMD 1053 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 113/624 (18%), Positives = 195/624 (31%), Gaps = 108/624 (17%) Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL- 481 + ++ L++ G V D D+L +R+ + G + FR + VK + Sbjct: 293 QHLGYMVATLLNAHV-VGAVHDKDNLRWKRVDTSGALILFLFRNLFKQWVCTVKRVMEKS 351 Query: 482 -----GDLDTLMPQDMINAKPISAAVKEFFGSSQL------------------SQFMDQN 518 DL I+ + F + SQ M Sbjct: 352 CVVGVPDLQGKSGSVNAITNVITNVLHLAFATGNWLVRKNSGTSKNTYTPRGVSQLMCVQ 411 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 N + I++ RR++ + + +VR +H +H G +CP ETPEG +G + L++ Sbjct: 412 NYGARISNLRRMTH----AVGFKGKNIKVRQLHNSHNGYICPYETPEGDRVGNVVQLALS 467 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV---EDLVT 635 A V IH L + Q N + G V D + Sbjct: 468 ATVTVP-------------VCPRNIHTLMMSALRLFADPQGNQPVLLNGEIVAWVRDRML 514 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ------RQA 689 C L+ V + + H RA + ++ R Sbjct: 515 CGMAMMHVLWDYPHVTVVFRHG------------YGVHCVQRRAAVSCDLSLHRGQYRMV 562 Query: 690 VPTLRADKPL--VGTGMERAVAVDSGVTAVAKRGGVV----------QYVDASRIVIKVN 737 P+L + + ER V++DS G+V + + ++ Sbjct: 563 CPSLVQGLLVRPFPSPTERVVSMDSMRAEFMDLPGIVVLTDAMSAVIPFYNHTQSPRNAY 622 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 + M G+ + + L +R + + P V P+ R + + + G Sbjct: 623 QSNM--GKQAVGLPCLNYMSRWDVTLDVLMYPQV----PLSRSKAM---DALSFDTMPHG 673 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP-- 855 VA + ++GYN EDSI+++ VQ F + + L + K E +P Sbjct: 674 ACPIVAVLTFDGYNQEDSIILNRSSVQRGMFVSTTYKTLCECEKHVKRCEFERIMCVPVD 733 Query: 856 -NVGEAALSKLDESGIVYI----GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 L + GI G VT G ++VGK++ F + Sbjct: 734 KRRPGLVYDYLGDDGIFDPALARGMFVTAGVVVVGKMS-----------------FDQSR 776 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 + SL V G D VF K + + + K S Q G Sbjct: 777 PEGVCCSLAVKPHEEGYFDDKLVFNMADGCKCVKIKLRKIRIPEMGDKFASFTAQKGTCG 836 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPR 994 + + L P Sbjct: 837 MMYDQWDMPFTADGVVPDLVINPH 860 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 33/215 (15%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV-FDVQEC 85 L+ + ++ ++ P+ N + + +P Sbjct: 22 LVHHHIAHYEHLLKVHIP------QVVEGEPPVI--IHNHSVTFGDVAYSKPSPETPGHA 73 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY-MGEIPLMT------------- 131 + TY + K L Q ++ + ++P+M Sbjct: 74 RAYDETYETTVSCKAYLT-------CLATGAKHVQHIHNLAKMPVMVRAQPLCQGIGECE 126 Query: 132 --DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 G F++ G ER+I+ +H + + + + + Sbjct: 127 KDPGGFFIVKGKERIIIPHIHTAYNIPITMHCTTKKTLVCEMRTHNETTGNNLLVKVRLM 186 Query: 190 PKDNLFVRIDR-RRKLPATIILRALNYTTEQILDL 223 + + + + LPA + AL + E +L Sbjct: 187 QGCIIEMSVPYIKSFLPAGAVFNALGVSEEDMLRY 221 >UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella terrestris RepID=B2X254_9CHLO Length = 808 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 126/272 (46%), Positives = 176/272 (64%), Gaps = 4/272 (1%) Query: 467 GLVRVERAVKE--RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 G + ++ +E + L D INA+ ++ A++EFFG+S LSQF+DQ NPL+EI Sbjct: 496 GFDKEKKNFREAPEFLITRKKNLRISDFINARYVNGALREFFGTSPLSQFLDQINPLAEI 555 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKRR + LGPGG++ + A VR +HPTHYGR+CP+ETPEG N GL+N+L+ YA+ N Sbjct: 556 THKRRFTLLGPGGVSEDTATMAVRGIHPTHYGRICPVETPEGKNAGLVNTLTGYARVNSD 615 Query: 585 GFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 G +ETP+ KV + + +LS +E V+A + ++ + G + + RS GE Sbjct: 616 GLIETPFLKVFKSQIQKKKGFFFLSPEQEEKSVLATGDLSISKTGFLPKGFLPARSLGEF 675 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 + S V +M VS Q++SV SL+PFLEHDDANRALMGANMQRQAVP R+++P+VGT Sbjct: 676 TKVSSKSVGFMSVSPIQLISVATSLVPFLEHDDANRALMGANMQRQAVPLARSEQPIVGT 735 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 G E DSG AK GG V Y A+++V+ Sbjct: 736 GTEAKAISDSGAAVRAKFGGFVCYASANKVVV 767 >UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hypnoides RepID=D0EVW5_9CHLO Length = 1310 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 130/518 (25%), Positives = 224/518 (43%), Gaps = 38/518 (7%) Query: 96 LRVKLRLVIYEREAPEGTVK-DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPG 154 + K+RL+ + K + ++ Y E L+ +I + + S Sbjct: 1 MYKKIRLIYIKNGNLLNLWKHFLFSKKKYSTEYFLLNCRIKKIIEPAIKYKSNNWKLSYV 60 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 ++ K S V + + + K + D R + + Sbjct: 61 LYILYFFQKKESKKFVNFFSES--------RLDNLKKSSQRAECDENRLMS--------S 104 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 QI F + + + L L + F I +V V + R + Sbjct: 105 LRNHQIFFSFLLIHNKKKKIRFQWVFLGNLPLMTKRGHFIINGAPRVIVNQIIRAAGVYY 164 Query: 275 RQLEKDDVK------LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 +Q +K V+ I+ + V + + ++ + + L Sbjct: 165 QQQVNKVIKKGQKQIYRTFYVDIISYRGVWLRFELDKKRQIWVCMKKTPKMPIFVFLKFM 224 Query: 329 GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENL 388 G + L + T T + L L + +++ + + Sbjct: 225 GFSKKNILSNVRNIQPNFFKNT--KMHTRNFLFYLTQNFQLEKTFNH-------TFTYRK 275 Query: 389 FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 F + YDL +GR + N L IL+ D + + +L+D+ N + VDDID+L Sbjct: 276 FLNPQIYDLGIMGRKRLNSKLGL--RTKKTILTPSDFLKITYRLLDLTNHQDVVDDIDNL 333 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 GNRRIR+VGE+ + QF R+ + ++E++ + + +P+++ ++EFFGS Sbjct: 334 GNRRIRTVGELLKIQFFQATFRLNKILEEKIKKTESMD----SIFTTRPMNSVLREFFGS 389 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 QLSQF+DQ NPLSE+THKRRIS LGP G+ RE AG ++R +H T++GR+CPIETPEG N Sbjct: 390 CQLSQFLDQTNPLSELTHKRRISCLGPNGIQRETAGMDIRGIHSTYFGRICPIETPEGQN 449 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 GL+NSL++++ N GFLE+ + K+ G + ++ L Sbjct: 450 AGLVNSLTIFSTKNADGFLESIFYKIYKGQIQKQLEPL 487 >UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 6 RepID=RPB2_IIV6 Length = 1193 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 79/449 (17%), Positives = 168/449 (37%), Gaps = 73/449 (16%) Query: 921 PNGVSGTVIDVQVF---TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 PNG++ V D + +K +++ + K + EE +I A Sbjct: 789 PNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYKTIIVEERKIGVNEKICMPVA 848 Query: 978 VL--VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL-----E 1030 + + E + P +++ + + ++ + + E Sbjct: 849 SVRRMNNYSLLEDNPESPYFGVVKVKSFVKRNDVLVGKVITKISKDGTRQETDHSTIVSI 908 Query: 1031 AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 ++ K+ + + + + K+ +A ++R + GDK KG + I DMP+ E+ Sbjct: 909 SEEGKVDRIIRTSKKGILMFKIVIAQQKRPEIGDKFCSAMAQKGTVGMILEEVDMPFMED 968 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD 1150 G+ D+++NP +PSRM I QI+ + +G + Sbjct: 969 GSIPDMIINPHCLPSRMTINQIMASIMGKTCCAKNETFG--------------------- 1007 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQI 1210 D S F + + + + + + + L+ +G Sbjct: 1008 ---------DASPFQESSLEKPQDKIHA----------------LCKELEECGYNYNGTE 1042 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG--SYSLVTQQPLGGKAQFGGQ 1268 + G G++ + G +Y +L H+V DK+ +R++ +T+QPL G+A GG Sbjct: 1043 TMMCGWNGKKLRAEIFFGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQPLNGRANEGGL 1102 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDD---------------VNGRTKMYKNIVDGNH 1313 R GEME + +G + L E + +SD V + + + +G Sbjct: 1103 RIGEMEKDCMLVHGISKFLHEKMFDQSDKFIINLCVPCKSYFKVVKTQNGFFCSGCNGID 1162 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ P + + +E+ ++G +E + + Sbjct: 1163 IVKFNCPFAAKLFFQELTAMGQKLEFKVK 1191 Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats. Identities = 132/989 (13%), Positives = 297/989 (30%), Gaps = 145/989 (14%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 L+ QL++F FI D + + + + Sbjct: 29 LKDYFQTSGLVKHQLETFDHFIFHDIKTII---------------DDEASIIFNG----- 68 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 R + S+ ++ Y R+ E +K + V++ + P +T++ T V Sbjct: 69 ---------KRSL--SSQIKNGAVEEGYNRKESEKI--MLKFENVFVAK-PTITNDDTTV 114 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 ++ + K + ++ + + E +L V+ Sbjct: 115 ---------------RPLYPAEARQKMITYDSFVFVD--VLEYVLRDEEEILVNKHLRVQ 157 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 I K+P + N + E + L G+ + + Sbjct: 158 IA---KIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYFIINGNERVLIGQLRNAYNRS 214 Query: 258 N--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + E + + + + I+ K K T +LI + Sbjct: 215 ICFRNKFSEPLTCDMRSMSEETGHSVLIQLRLNDSPISQKRNLKKLDKNGTIDLIISQTK 274 Query: 316 ELSLD--LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + L + +++ L ++ + Y+ + + + Sbjct: 275 TPIPISFVFRVLKVATIDKLKFLIGDEEELDKYLIKIVEETSDGGIFDDMEIEISQEDDF 334 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 E+ E F +D + V +++L ++ +L + I+ K Sbjct: 335 NEENEESTEKKKITQFIEQDMFPHLGVSSTHEEKAILLGKMVRKLLLVNETSINANKFAQ 394 Query: 434 DIRNGKGEV----------DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + + +D D+ N+R+ + G + FR+ R ++ +L + Sbjct: 395 RANDETNKTNKTNKMYYTQEDRDNYSNKRVETAGVLCFELFRMLYKRFIKSNINQLEKRN 454 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFM-DQNNPLSEITHKRRI 530 + + I+ + F + +Q ++ + + ++ RR Sbjct: 455 RVEMDV--ISKNAFITTGLHFSFSTGNWGVQKNNYIRTGVAQIPQNKVSFGAFFSYLRRF 512 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 + +E ++R +HP+ CP ETPEG +G+ + S+ A+ + Sbjct: 513 VI----PMGKEGKNTKIRQIHPSSIFFACPSETPEGQFVGITLNFSMLAEVSIRTSSVVI 568 Query: 591 YRKVTDG-VVTDEIHYLSAIEEGNYV----IAQANSNL----DEEGHFVEDLVTCRSKGE 641 + +H +S E ++ I N + + + D+ + K Sbjct: 569 KEIIEASHQAFKHVHEISLEENKQFLSKLSIIFVNGGICGLTSKPQQLLSDVRDLKLKHC 628 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA---NRALMGANMQ----------RQ 688 V ++ + S I + + + N +M + Q + Sbjct: 629 LKY-DVSAVFIPELKEVHISSDAGRFIRPVLNLQSIKTNGNVMWNSFQNCLENGHVVYKD 687 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVA-----KRGGVVQYVDASRIVIKVNEDEMYP 743 A ++ + + R V + A + + + ++ + M Sbjct: 688 AYEIEQSQIAINLQDLSRYPTVYDSMEIHASCMLGVMAAQIPFAEHTQSPRLCYQSSMAK 747 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 G + K + + Q P V+ + G N VA Sbjct: 748 QAIGNIPSHHVKSDNTTRVMDYVQRPLVTTQ----------IAEMNRFNDFPNGLNAMVA 797 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS 863 + G+N EDSI++++ + F + + + R + + S Sbjct: 798 VAIYTGFNQEDSIILNKASIDRGMFHVVTYKTIIVEERKIGVNEKICMPVASVRRMNNYS 857 Query: 864 KLDES------GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 L+++ G+V + + V D+LVGKV K T +E D S Sbjct: 858 LLEDNPESPYFGVVKVKSFVKRNDVLVGKVITKISKDGTRQET--------------DHS 903 Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRAL 946 V G V + ++ G+ K + Sbjct: 904 TIVSISEEGKVDRIIRTSKKGILMFKIVI 932 >UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT n=1 Tax=Hydra magnipapillata RepID=UPI0001924CDE Length = 1117 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 81/458 (17%), Positives = 150/458 (32%), Gaps = 87/458 (18%) Query: 913 VKDSSLRVPNGVSGTVIDVQVFTR---DGVEKDKRALEIEEMQLKQAKKDLSEELQILEA 969 V + N V ++ R + K I + Q + A Sbjct: 714 VAIACYSGYNQEDSIVFNMTSLQRGLFRSMSLYKYISSITKNQETSGNDKFMKPPPDKMA 773 Query: 970 GLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL 1029 G + L G E+ D + N + ++ K + + Sbjct: 774 GTKNGNYDKLNEHGYIPEETQITKGDVIFGKVTPINDTTNTGRIFKDSSEQYKSYADGVI 833 Query: 1030 EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 + I D + K + +R + GDK RHG KG I DMP+ + Sbjct: 834 DRVYTDIKNQD-----GYETRKALVRSERFPRIGDKFCSRHGQKGTIGISLRGIDMPFTK 888 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 G DI++NP +PSRM+I Q+ E G G ++ + ++ +++ ++ Sbjct: 889 WGIRPDIIVNPNAIPSRMSIAQLCECLFGKVGALKGMNMDGTAFEDYDIDAMKDMLESLG 948 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 + +G Sbjct: 949 YQRECE-----------------------------------------------EYLYNG- 960 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 G+ + + +G Y +L H+V DK+HAR G +++T+Q G+++ GG R Sbjct: 961 ------MLGKMIKHMIFIGPTYYQRLRHMVQDKIHARGRGPVTILTRQAPEGRSREGGLR 1014 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK---------------------M 1304 GEME A+ +G A L+E + +D V G Sbjct: 1015 LGEMERDAVITHGIAKFLKERMLDCADAYSTYVCGICGMFARREDSRFSEPTPGPDDVYY 1074 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P +F ++L+E+ ++ I + + Sbjct: 1075 CPKCNNYTDIHQIMIPYAFKLMLQELMAMNIAPRIRVQ 1112 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 120/878 (13%), Positives = 255/878 (29%), Gaps = 123/878 (14%) Query: 204 LPATIILRALNYT---TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 +PA + + N E + ++ + I + ++ + + + I+ N Sbjct: 41 IPAMVRSKYCNLNIYKEETRDECKYDPGGYFIINGSEKVVICQDSMIKNHPMVFIKKNSN 100 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 V + + ++ + + ++ V + E ++ A S Sbjct: 101 V---SNKVVQVNSKSNDPTSMMQSVLIKIKKDGIMTVKISVLYEVNVMILFRALGIESDR 157 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYIS-ETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 + ++ + + ++ + + A+ + M+ + T Sbjct: 158 DIIEICAYDKTDYHMIELLRVSLETCVNDNDDQEHKIQTQEEAIDLLITKMKVLKNYTNT 217 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 + FE ++ + ++ KL+ + G+ Sbjct: 218 NLSTRFEQKKLHLLDLLKTSFLPHIE------GSPSNPYREKAYYLGYIINKLLKVELGR 271 Query: 440 GEVDDIDHLGNRRIRSVGEMAEN----QFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 VD+ D +RI ++ E+ E Q++ + + R+ D D P ++I+ Sbjct: 272 APVDNRDAYTKKRIDNIRELLEEIMIQQYKNNMNECSKQFTARMG-DDGDAADPYNVIHQ 330 Query: 496 KPISAAVKEF-----FGSS----QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 + F G+ +SQ + +N+ + +T RI + + Sbjct: 331 FKAGTFEQGFKASIMIGNWSRKKGVSQMLQRNSYMQLLTSLSRIDS--QSSTQSAGRLTK 388 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSV--YAQTNEYGFLETPYRKVTDGVVTDEIH 604 R V P+ +C + TPE NIGL+ LS+ + E + + +I Sbjct: 389 PRHVDPSTVPFLCVVSTPEHGNIGLVKHLSMIGSITIGDKDNTEIVKEFIMTHPLVKDIS 448 Query: 605 YLSAIEEGNYVIAQANSNLDE----------------EGHFVEDLVTCRSKGESSLFSRD 648 + E N N + F D + E + Sbjct: 449 EVPVYELKNMFKVFLNGEWLKVVENSYDVGDNYYDNPVIKFYSDAKVKKISCEFNPQMTS 508 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD------------ 696 V + + + L + + + +M + D Sbjct: 509 VVFDYKDNEIRFNTDSGRLYRPVIRINGDNEMMLTKEMIDKISLKATDVGKISDWDEFYI 568 Query: 697 --------------------KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 + ER +DS + + ++ Sbjct: 569 QYPYPIEFIDSEEQPFMLIAEDRKVLNFERKKIIDSEKHVFKGEESKIVNRFDDKFFLRY 628 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSN---QNTCINQMPCVSLGEPVERGDVLAD-------- 785 + E++P +I + N +N +G D Sbjct: 629 DSIEIHPSVLLSEIATNIPFCEKNCSTRNIYQYAQGKQGMGVYCTAYRSRTDLSFILYNP 688 Query: 786 ---------GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 T L G N VA ++GYN EDSI+ + +Q F ++ + + Sbjct: 689 EVPVVNTRTSKYTYTDILPPGSNAVVAIACYSGYNQEDSIVFNMTSLQRGLFRSMSLYKY 748 Query: 837 --ACVSRDTKLGPEEITADIPNV----GEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + G ++ P+ KL+E G + ++T GD++ GKVTP Sbjct: 749 ISSITKNQETSGNDKFMKPPPDKMAGTKNGNYDKLNEHGYIPEETQITKGDVIFGKVTPI 808 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 +T T KDSS + + G + V K++ E + Sbjct: 809 NDTTNT-------------GRIFKDSSEQYKSYADGVIDRV-----YTDIKNQDGYETRK 850 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 ++ + + G I L + K Sbjct: 851 ALVRSERFPRIGDKFCSRHGQKGTIGISLRGIDMPFTK 888 >UniRef50_Q06VE3 RNA polymerase subunit n=3 Tax=Ascovirus RepID=Q06VE3_TNAVC Length = 1160 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 140/988 (14%), Positives = 308/988 (31%), Gaps = 148/988 (14%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M +Y K + F K + QLDSF F++ + P+ Sbjct: 1 MSTTYDSYKVVELWFKKY-------GTVKAQLDSFTSFLDN-------IRTVLHDEPPLV 46 Query: 61 SYSGNSELQYVSYRLGEPVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 G +++ + P + +++G+ Y + V + Sbjct: 47 --IGGEVIRFENVTFLTPSYLVNGISKTLYPSIARMKGLNYEFTMCVDV----------I 94 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVING---TERVIVSQLHRSPGVFFDSDKGKTHSSG 168 +++ V + ++P M + + G E + ++ PG +F H+ Sbjct: 95 NETTGVRDNGVELCQLPCMVGSEMCNLKGMSDAELLTHGEILGIPGGYF------IHNGV 148 Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV 228 + + I P + + ++ ++ R T +A+ I + Sbjct: 149 ERVLIGHIKPAYNTPIVYKTRNDK--WICQLRSMNDE-TAKSKAVA-----ITRSNSGAL 200 Query: 229 IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 + E ++ + + G+ D + + + + +R L + Sbjct: 201 VVEFDSGAVRTTITTKSANGKE---DTSTSTTITAGAKVFLVSEVMRDLL---GGDLGKL 254 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 Y+ G + +I ++ E++ A L ++ + L I Sbjct: 255 KTYLGGDYLDTTHISDTVDEILQAPENLQVYPELVRVVRECINN----GEKPLTITTTIK 310 Query: 349 ETLRV-DPTNDRLSALVEIYRMMRP-GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + L V + ++ E+Y + P +E A+ + + Sbjct: 311 KILVVPKRVSTKVIQRSELYNRLEPVIRECVKEGADITDIMVIVNNAAKYKPLHDYSTLF 370 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + ++ + +++++ + G + + + +R+ G M + F++ Sbjct: 371 MHIGIRC---DNVVRAHFLGNMIRRYVLTEKGAIKEESREQYSKKRVDFAGTMCLDLFKM 427 Query: 467 GLVRVERAVKERLSLGDLDTLMPQDMINA--KPISAAVKEFF--GSSQ-----------L 511 + R S D P + INA + I +K F G + Sbjct: 428 TWKQFLIDAASRTS----DRCNPINAINAVKRGIGYQIKMCFVHGRWGAKNAEHKTIGIV 483 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 + + + I RR+ + +E +R + +H C +ET EG ++G+ Sbjct: 484 EAIPVKTSVATSIDSLRRMKL----QVHKENKDRSIRKLCTSHAFFACCVETTEGADVGI 539 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS--AIEEGNYVIAQANSNL------ 623 +L+ A + + ++ L A I + + Sbjct: 540 RLALAAVAFASVRQPTMLVRDIIEFTLLDKLKPTLECVATSPKYAAILLNGTPIGYVEDH 599 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH--DDANRALM 681 + + L R + S D + V V + L D +M Sbjct: 600 EITIKILRKLRDLRRFNDDVSISMDYI----VKCIDVWCDCGRFVRPLLVKSHDMCEKIM 655 Query: 682 GAN-MQRQAVPTLRADKP--------LVGTGMERAVAVD-----SGVTAVAKRGGVVQYV 727 AN M + + + T E + + + G + Y Sbjct: 656 EANTMDELEQSLVVVHRDAIEISRSEIAMTPNEAILDDYEYSELNPSCMLGLLAGEIPYA 715 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN--QMPCVSLGEPVERGDVLAD 785 + + + M GI + +++K+ + + +N Q P ++ Sbjct: 716 NYTPSPRACYKTNMARQSMGI-LPSISKFNNHSNSIHLNYAQAPIITTRC---------- 764 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 +T + E G N VA M G+N EDSI++++ + F +E+ R + Sbjct: 765 AKATKVNEYPNGINAIVAVMAHTGFNQEDSIIINKSALDRGMFNATQRREITVDLRIGTI 824 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 + A + E G+ +G+ + GD L+GKV+ T Sbjct: 825 VDDMCKPPEDLRIRANYDNIGEDGLPIMGSIIKKGDALLGKVSTDRNTS----------- 873 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQV 933 +D+S+ G V V++ Sbjct: 874 ------RREDTSIIARMQDEGVVKSVKI 895 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 80/440 (18%), Positives = 148/440 (33%), Gaps = 78/440 (17%) Query: 920 VPNGVSGTVIDVQ--VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 PNG++ V + F ++ ++ M +++++ +L+I Sbjct: 773 YPNGINAIVAVMAHTGFNQEDSIIINKSALDRGMFNATQRREITVDLRIGT----IVDDM 828 Query: 978 VLVAGGVEAE-KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + D + D +G ++ L +++ + + E + + + Sbjct: 829 CKPPEDLRIRANYDNIGEDGLPIMGSIIKKGDALLGKVSTDRNTSRREDTSIIARMQDEG 888 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN-GTPVD 1095 G V++ L V + GDK KG I P DMP+ + G D Sbjct: 889 VVKSVKIDG--SSVRIRLEVVLDVMIGDKFCSAMAQKGTCGMILPDIDMPFVADSGMIPD 946 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I++N +PSRM + QI+ + G A I+ Q L Sbjct: 947 ILVNVHSMPSRMTVNQIMASMAGKLACITARNIDGSPFQLDVNDVLF------------- 993 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 ++ E L G + +G Sbjct: 994 --------------------------------------DLCEQLAEVKYDKDGCETMCNG 1015 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS-YSLVTQQPLGGKAQFGGQRFGEME 1274 TGE F P+ +G +Y L+ LV K+ + +T + + +T+QPL G+A GG R GEME Sbjct: 1016 LTGEMFSCPIFIGVVYYLRPVQLVRHKIFSSTTTTMRNHLTRQPLNGRAHEGGLRVGEME 1075 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNI----------------VDGNHQMEPG 1318 L +G+ LQE + SD Sbjct: 1076 KDDLLRHGSINFLQERMLTLSDKHIMMICTICGSESHVALRSDGSFVCLRCKQLMVNPIT 1135 Query: 1319 MPESFNVLLKEIRSLGINIE 1338 +P + + + ++ +G+ ++ Sbjct: 1136 IPYAAKLFFQYLQGVGLGVK 1155 >UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NYQ6_COPC7 Length = 1127 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 90/447 (20%), Positives = 147/447 (32%), Gaps = 95/447 (21%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA--SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 TP Q + KL R G+ ++ + +GT V V + G + + Sbjct: 645 TPATAIQHRTDNKLYRLQTGQSPIVRPSLHNTYGMDAFPNGTNAVVAVISYTGYDMEDAM 704 Query: 946 LEIEEMQLKQAKKDLSEELQILE--------AGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 + + + + QI++ + +AG + + P Sbjct: 705 ILNKSAHERGFTYGTIYKSQIIDLKEVRGASKSSSTPTLHFGIAGDIRLTGDNAHPC--- 761 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL-------------AP 1044 D++ + D L + R +GD+ Sbjct: 762 --AEFVDKDGLPFPGVRVKPGDPLAAYIDDTTGRTRFVKYKGDETAYVDQVRLLGSDAGD 819 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 L+ V V L + R GDK + RHG KGV S+ P DMP+ E+G D+++NP P Sbjct: 820 SELQKVHVTLRIPRAPVIGDKFSSRHGQKGVCSQKWPAIDMPFSESGIQPDVIINPHAFP 879 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SR IG + +M + GA D + F Sbjct: 880 SR---------------MTIGMLVESMAGKA----------------GAMHGLAQDATPF 908 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E + + L G +Y G TG++F Sbjct: 909 KFTE-------------------EDTAIDYFGKQLLAAGYNYYGNEPMYSGITGQEFAAD 949 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + G +Y +L H+V DK G+ + GG RFGEME AL A+G + Sbjct: 950 IYFGVVYYQRLRHMVLDKFQ----------------GRKRAGGIRFGEMERDALIAHGTS 993 Query: 1285 YTLQEMLTVKSDDVNG-RTKMYKNIVD 1310 + LQ+ L SD + +++ Sbjct: 994 FLLQDRLMNCSDYSTAWVCRTCGSLIS 1020 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 98/751 (13%), Positives = 209/751 (27%), Gaps = 118/751 (15%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I N ++ I + +Y + T L Sbjct: 155 GYFVINGNERLIRYLILPRRNHVISLIRPSFSNRGPSYTQYAVQIRCVRPDQTSVTNTLH 214 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE-----TLRVDPTNDRLSALVE 365 AN + + + L I E DR+ L+ Sbjct: 215 YLANGSAMFRFTWRKQEYVIPIMLILKALVNASDKEIFEGVVMQDYDNTFLTDRVELLLR 274 Query: 366 IYRM--MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 ++M M GE + L ED + +A+G + +L Sbjct: 275 SFKMYTMHTGEQCLEYLGDKFRVVLNLPEDWTN-AAIGAWLIQKLVLVHLETPR--DKFR 331 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG- 482 ++ +++K+ + +G+ D+ D ++ + G + + + + A++ +++ Sbjct: 332 MLLYMLRKMYSLISGECCADNPDSPQHQEVLLPGSLYGMIIKERMEEILNAIRATIAMDV 391 Query: 483 ------DLDTLMPQDMINAKP---ISAAVKEFFGSSQLSQ--------------FMDQNN 519 D + K I + + F + L ++ N Sbjct: 392 RTGANVDFHDKKYFAKVLTKVNFDIGSKMSNFLATGNLVSPTGLDLQQASGFTIVAEKLN 451 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 I+H R + G E VR + P + + N L+ + Sbjct: 452 WQRYISHFR---CIHRGAFFAELKTTTVRKLLPEAW------------VAHIPNLLAAHG 496 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 + + DG ++ VI A + +L +++ Sbjct: 497 -------MTQSFATSIDGRKNL------CVQLDGRVIGWARPVV--AAQLATNLRIWKTE 541 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 G+ + ++ ++ + L F R + + Sbjct: 542 GKYEVPLDLEIGFV---PESHGGQYPGLFLFSTKARFMRPVKYLANGKDDQI-------- 590 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP-------GEAGIDIYN 752 G V ++ T GV +V+ M P G+ + Sbjct: 591 ---GSFEQVYMNIACTPEEIEEGVSTHVEHDPTNFLSILANMTPFSDFNQMGKQTMGTPA 647 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 R++ Q + P D G N VA + + GY+ Sbjct: 648 TAIQHRTDNKLYRLQTGQSPIVRPSLHNTYGMDA-------FPNGTNAVVAVISYTGYDM 700 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG------------EA 860 ED++++++ + + ++ + + + + G Sbjct: 701 EDAMILNKSAHERGFTYGTIYKSQIIDLKEVRGASKSSSTPTLHFGIAGDIRLTGDNAHP 760 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPK-----------GETQLTPEEKLLRAIFGEK 909 +D+ G+ + G V GD L + ET + +LL + G+ Sbjct: 761 CAEFVDKDGLPFPGVRVKPGDPLAAYIDDTTGRTRFVKYKGDETAYVDQVRLLGSDAGDS 820 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 +LR+P VI + +R G + Sbjct: 821 ELQKVHVTLRIPR---APVIGDKFSSRHGQK 848 >UniRef50_A9BK45 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK45_9CRYP Length = 1100 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 88/424 (20%), Positives = 161/424 (37%), Gaps = 66/424 (15%) Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 SG V + + G + + + + ++ + + + + L A Sbjct: 727 TSGINACVCILSYSGFDIEDAII----LNRSSIERGFFRSVIARKHKILLKNSDFLGAKS 782 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 E + + + + + + ++ Q+ + + +L K K + + Sbjct: 783 FERPLPNLEKFEEKKIKKIENYGEVVKFQKKKNQFLNFEKQIFSRLSLKEFKGEMIEKVI 842 Query: 1044 PGVLK----IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 VK+ L R+ + GDK + RHG KGV I +D+P+ +G D+++N Sbjct: 843 ISSNFLEIFFVKLILRQIRQPEVGDKFSSRHGQKGVCGAICFQKDLPFSNDGIIPDLIMN 902 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P G ++ K+ Sbjct: 903 PH----------------GFPSRMTVGKV------------------------------- 915 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 E+M G I F +K A+IK+ LK+ + G+ + G TG Sbjct: 916 -------IEIMGAKIGSIFGKFIDGTPFIESKIAKIKKKLKIAGYSSEGKEFFFSGITGV 968 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 V G ++ KL H+V DK+HAR G S +T+QP+ G+++ GG RFGEME L Sbjct: 969 PMLMDVFSGPVFYQKLKHMVKDKIHARGKGPCSNITRQPIEGRSRGGGLRFGEMERDCLI 1028 Query: 1280 AYGAAYTLQEMLTVKSDDVNG----RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 +YGA+ + E L + SD T + + + + +P + +L +E++S+ I Sbjct: 1029 SYGASEAIIERLLISSDLTQANFDLHTGFFTDKKKSLNIVSLKLPYACKLLFQELQSMNI 1088 Query: 1336 NIEL 1339 L Sbjct: 1089 LPRL 1092 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 94/737 (12%), Positives = 238/737 (32%), Gaps = 107/737 (14%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 L F+ + K + K+P + + + IL F + + N+ ++ Sbjct: 98 LSFKIEKKKFNVFNFNLG-KIPIMLQ------SNKCIL--FSKNENEFLSLNECPLD--- 145 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 F ++ KV + + + R I + + V + + K + Sbjct: 146 -----PGGYFILKGTEKVILIQEQVSANR-INIEQDQHGSICAVVNSFSSNKKIRNVVFL 199 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE----TLRVDPTNDR 359 ++ + L L G ++ + I E ++ + Sbjct: 200 KNQKLYFKHKLFVEEIPLFIFLKSLGFEKDREILDLIGKEYENILEWSLFETKLAGITSK 259 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+ I + + + + + + + + + + G+ Sbjct: 260 KQAIFYIVQRFNFNLFEKKFSDNAFKSKSYSENEFFFKEGLTKFILTHLTPKVFYGGNLE 319 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 + ++KK+ N D+ D+ GN+R+ G + F + + + Sbjct: 320 EKGIFLSLMVKKIFSNLNQPMITDNKDYYGNKRLGLAGNLVSILFEDFFRKTLKEGYKYY 379 Query: 480 SLGDLDTLMPQDM-----INAKPISAAVKEFFGSSQL------------SQFMDQNNPLS 522 L Q + + I+ ++ F + +Q + + + +S Sbjct: 380 KLNSTKLKKNQHLELISFLRQDIITNGLEYSFSTGNWIVKKLKIEKNGVTQTLSRLSFIS 439 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 I+ +I++ + R R +H + +G +CP +TPEG + GL+ L++ A + Sbjct: 440 SISIVTKITSQNE----KIRKIRGPRSLHSSQWGMICPTDTPEGESCGLVKDLTILAHIS 495 Query: 583 ----EYGFLETPYRKVTDGVV--TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 + Y + ++ + +L ++ + + +F+ + Sbjct: 496 VKIKTRFITQLCYDLGIENLIHPKKKNFFLEKKICKIFLNGRYLGIHNNPSYFMYSFRSM 555 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV-----P 691 R G + + D + ++ F + R + ++ + + Sbjct: 556 RRSGMINYYVSIFWD----------TFSEEIVIFTDEGRICRPFLIVDLGKVKIKNFEKK 605 Query: 692 TLRAD----KPLVGTGMERAVAVD-----------------------SGVTAVAKRGGVV 724 L+ + K L TG+ + V+ S + ++ Sbjct: 606 LLKKNLTFCKDLFLTGLLEFLDVNEQNNAFIAQSPQYINNKTTHLEISPEIVLGICASLI 665 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN---TCINQMPCVSLGEPVERGD 781 ++D ++ + M G+ I +L + R + Q P V G Sbjct: 666 PFLDHNQSPRNTYQCAM--GKQAIGSISLNQNQRCDTILSLLIYPQKPLVKTKMVYFSG- 722 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 L G N V + ++G++ ED+I+++ ++ F ++ ++ + + Sbjct: 723 ---------NNRLTSGINACVCILSYSGFDIEDAIILNRSSIERGFFRSVIARKHKILLK 773 Query: 842 DTK-LGPEEITADIPNV 857 ++ LG + +PN+ Sbjct: 774 NSDFLGAKSFERPLPNL 790 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 111/771 (14%), Positives = 237/771 (30%), Gaps = 137/771 (17%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 +K+F +L L+ Q++SF F+ D + F + I + L++ Sbjct: 6 KKNFNLVSYILKSKGLIWQQIESFNYFLNTDIKKI-----IFMNQKKIFDSDDSFFLKFS 60 Query: 72 SYRLG---------EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 ++G E +C+ +Y+ + L I +++ Sbjct: 61 KLKIGLASEYLNFMEMPISPYQCRTTDSSYTGTIFFDLSFKIEKKKFNVFNFN------- 113 Query: 123 YMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFD 158 +G+IP+M G F++ GTE+VI+ Q S Sbjct: 114 -LGKIPIMLQSNKCILFSKNENEFLSLNECPLDPGGYFILKGTEKVILIQEQVSANRI-- 170 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE 218 + + + + F ++P I L++L + + Sbjct: 171 -NIEQDQHGSICAVVNSFSSNKKIRNVVFLKNQKLYFKHKLFVEEIPLFIFLKSLGFEKD 229 Query: 219 -QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL 277 +ILDL ++ + + + +L + + + ++ EK A + Sbjct: 230 REILDLIGKEYENILEWSLFETKLAGITSKKQAIFYIVQRFNFNLFEKKFSDNAFKSKSY 289 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 +++ E ++I + K + + E ++ + + Sbjct: 290 SENEFFFKEGLTKFILTHLTPKVFYGGNLEEKGIFLSLMVKKIFSNLNQPMITDNKDYYG 349 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 L + L D L + Y++ + F + + Sbjct: 350 NKRLGLAGNLVSILFEDFFRKTLKEGYKYYKLNSTKLKKNQHLELISFLRQDIITNGLEY 409 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 S + L E+ + LS+ I + + I + ++ R+IR Sbjct: 410 SFSTGNWIVKKLKIEKNGVTQTLSRLSFISSISIVTKITSQNEKI--------RKIRGPR 461 Query: 458 EMAENQFRV-------------------GLVRVERAVKERLSLGDLDTLMPQDMINAK-- 496 + +Q+ + L + +K R L +++I+ K Sbjct: 462 SLHSSQWGMICPTDTPEGESCGLVKDLTILAHISVKIKTRFITQLCYDLGIENLIHPKKK 521 Query: 497 --PISAAVKEFFGSSQLSQFMDQNNP--LSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 + + + F + + + + S + +R + + E+ Sbjct: 522 NFFLEKKICKIFLNGRYLGIHNNPSYFMYSFRSMRRSGMINYYVSIFWDTFSEEI----- 576 Query: 553 THYGRVCPIETPEGPNIG--LINSLSVYAQTNEYGFLETPYRKVTDGV-VTDEIHYLSAI 609 I T EG LI L N L + +T + +L Sbjct: 577 -------VIFTDEGRICRPFLIVDLGKVKIKNFEKKLLKKNLTFCKDLFLTGLLEFLDVN 629 Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 E+ N IAQ+ ++ ++ ++++S + V+ + ASLIP Sbjct: 630 EQNNAFIAQSPQYIN-----------------------NKTTHLEISPEIVLGICASLIP 666 Query: 670 FLEHDDANRALMGANMQRQAV----------------PTLRADKPLVGTGM 704 FL+H+ + R M +QA+ + KPLV T M Sbjct: 667 FLDHNQSPRNTYQCAMGKQAIGSISLNQNQRCDTILSLLIYPQKPLVKTKM 717 >UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrella patens subsp. patens RepID=A9RIU1_PHYPA Length = 472 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 92/425 (21%), Positives = 161/425 (37%), Gaps = 56/425 (13%) Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 +G + + + + G ++ L + K + E+ + F V V G Sbjct: 93 NGVNVVIAILSYFGYNQEDSLLFNKSSIDKGLFSSIEYEVVEIIENKFMNEILVYVPDGD 152 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 D + + + D + + E+ ++ K ++ + Sbjct: 153 ILRDNDGI---ILVGQQVKDGDTIAAKLVITEKKQSIEKIVLKSFVSRWVDKVTKHT-SV 208 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 KIV+V + + R G K RH KG+I I ED+ + ++ D+++NP +P Sbjct: 209 EGNKIVRVRILLYRFPIVGHKFTSRHSQKGIIGAILSQEDLSFTKDEIAPDLIINPHVIP 268 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRM +G +LE + + Y L ++ + Sbjct: 269 SRMTMGHLLEMV----------------------------MYKIYVLDSNNAR------- 293 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 + ++ R+ I VF+ A + D+ + ++Y G T E Sbjct: 294 --DPMLSSKPKSRESSCIDATVFNRAHRSF------EADIAKLCKEKMYCGATRLPIEAI 345 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 V G Y L H DK H+ S G +T+QP+ G+++ GG RFGEME L A+G A Sbjct: 346 VATGICYYHVLRHQARDKAHSISKGVIQSLTKQPVEGRSRKGGLRFGEMEKDYLIAHGVA 405 Query: 1285 YTLQEMLTVKSD--------DVNGRTKMYKNI-VDGNHQMEPGMPESFNVLLKEIRSLGI 1335 L E L SD D + +I +G + E +P SF +L +E+ I Sbjct: 406 SMLFEKLKNTSDLYEIWIYHDCSMICSSSPSINCNGRNTKEHRLPYSFKLLAQELSIANI 465 Query: 1336 NIELE 1340 + L+ Sbjct: 466 RVGLK 470 Score = 106 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 27/228 (11%) Query: 697 KPLVGTGMERAVAVDSGVTAV-----AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 + + T + + + + +V+ ++ V + M + ++ Sbjct: 2 QCFIATTHDSICNQHTHIEIHPSFMFELSASMTPFVNFNQSSRIVFQSAMSKQAMPLALH 61 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 +T ++ Q P ++ ++ G N+ +A + + GYN Sbjct: 62 IMTNMISDSKILTYAQKPI-------------CTTTISNTIKVYNGVNVVIAILSYFGYN 108 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 EDS+L ++ + + F++I + + + EI +P+ L D GI+ Sbjct: 109 QEDSLLFNKSSIDKGLFSSIEYEVVEIIENKF---MNEILVYVPD--GDILR--DNDGII 161 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV-KDSSL 918 +G +V GD + K+ E + + E+ +L++ V K +S+ Sbjct: 162 LVGQQVKDGDTIAAKLVIT-EKKQSIEKIVLKSFVSRWVDKVTKHTSV 208 >UniRef50_Q4QA33 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QA33_LEIMA Length = 1616 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 94/475 (19%), Positives = 153/475 (32%), Gaps = 101/475 (21%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 + +I+ R + +I K + KD L + R A Sbjct: 1185 YTGYDMDDAVIINSTAAQRGMLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTG-ERFTA 1243 Query: 978 VLVAGGVEAEK----LDKLPRDRWLEL-GLTDEEKQNQLEQLAEQYDELKH----EFEKK 1028 L A G+ ++ LD DR + GL D + E+ D + E+ + Sbjct: 1244 ELEANGLPPKRANASLDAFSFDRDHKYPGLRDNNDVYCCAKRVERVDPFTNKAVYEYTRH 1303 Query: 1029 LEAKRRKITQGDD----------LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 K R +G+D + V + + R GDK + RHG KG + Sbjct: 1304 HATKWRHFDKGEDAWVQQVIPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPL 1363 Query: 1079 INPIEDMPY-DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 D+P+ +G D+++NP PSRM +G +LE G I+ Sbjct: 1364 HIRSHDLPFATASGITPDVIINPHAFPSRMTVGMVLEIMTAKVGAIEGRFID-------- 1415 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 +T I E Sbjct: 1416 -----------------------------------------NSAWSTVDEQPRVAELIGE 1434 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV--- 1254 L G+ L DG +GE+ + V +G +L H+V DK AR+ Sbjct: 1435 ALVKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQARARTDAHTYRAV 1494 Query: 1255 --TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK----- 1303 T QP+ G+ + GG R GEME L ++G + + + L SD + R Sbjct: 1495 TKTGQPVKGRKRHGGVRVGEMERDGLLSHGISEVVVDRLLHVSDKTKAFICPRCGSLLSL 1554 Query: 1304 ------------MYKNIVDG-----NHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + G + +P+ + E+ S+GI + L+ Sbjct: 1555 YERHATEYGTWRTCRFCGAGADESTDSIAMVEIPQVLRLWAAELTSIGIRVVLKT 1609 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 82/545 (15%), Positives = 169/545 (31%), Gaps = 108/545 (19%) Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 D +I + ++L +G E D + + +V ++ F V L R R RL+ Sbjct: 723 KFDAMIAITRQLYLFIDGAVEHQGNDVPAYQELFTVSQVLMGAFEVCLNRYMRGFVYRLA 782 Query: 481 LG-------------------DLDTLMPQ---------------------DMINAKPISA 500 D + M Q ++ I+ Sbjct: 783 RHLPAALFRRILSLRTLLPPVDAEDTMRQVRQFAEFCGRHGGSDPLDQLARLLVTGNINL 842 Query: 501 AVKEFF---GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGR 557 +E F +S + N R + G + EVR YG Sbjct: 843 DREEDFYCPQTSGWVVMAEHLNFYRFFEQLR---CVHRGKTIADMRSSEVRKYPCEAYGF 899 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGF--LETPYRKVTDGVVTD--EIHYLSAIEEGN 613 +C +++P+G + G++N LSV ++ + R++ V LS + + Sbjct: 900 ICMVQSPDGEDCGVLNHLSVSTISSNSPDAAMTAQLREIVRKAVPGVRSRATLSTVVDQL 959 Query: 614 YVIAQANSNLDEEGHF-----VEDLVTCRSKGESSLFSRDQVDYM----DVSTQQVVSVG 664 + G+ VE T R + +L S+ V + D S + V Sbjct: 960 CETVPVWMEGELLGYLSPADAVEAAATLRERKALTLRSQVHVTGIVRRKDASPLHTLEV- 1018 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADK-----------PLVGTGMERAVAVD-- 711 + + D + + R P R + PLV G +D Sbjct: 1019 --VYVAPKSKDPAGLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLVFIGTWEQSWLDIA 1076 Query: 712 ----------------------SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 +G ++ + + + + + + + +G Sbjct: 1077 AVPSDPLDAVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQ 1136 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 + L R P + R + D D ++ LG N +A + + G Sbjct: 1137 LQALAW--RKEAKLFRTYCPQ----RYISRTLPM-DYYGLD--DVNLGVNAVIAILAYTG 1187 Query: 810 YNFEDSILVSERVVQEDRFTT--IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 Y+ +D+++++ Q T + + + + + ++ + GE ++L+ Sbjct: 1188 YDMDDAVIINSTAAQRGMLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEA 1247 Query: 868 SGIVY 872 +G+ Sbjct: 1248 NGLPP 1252 >UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S96_GUITH Length = 1049 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 88/480 (18%), Positives = 172/480 (35%), Gaps = 73/480 (15%) Query: 876 EVTGGDIL--VGKVTPKGETQLTPEE-------KLLRAIFGEKASDVKDSSLRVPNGVSG 926 E++ G+IL + P + +P K + G + D +L + Sbjct: 629 EISEGNILGISASLIPFSDHNQSPRNTYQCSMGKQSASFLGFNQNSRIDITLSLLIYPQK 688 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 ++ ++ G K + + D+ + + + ++ + + Sbjct: 689 PILKTKILNLIGAGKCPTGINTCISIMSFTGYDVEDAIILNKSSVERGFFKTAF---LRK 745 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 K++ +L ++ + + + + L+ + L Sbjct: 746 TKIEISSFRHLTQLFSKVNHNNKEVFEFLNKSNNNNQKITSNLKYSDNLVVVKYGLD--- 802 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L + K + R + GDK + RHG KG+ I P +DMP+ E G DI+ Sbjct: 803 LTLAKFLIRECRNPEIGDKFSSRHGQKGICGFIKPQQDMPFSEKGICPDII--------- 853 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 + H + IG I +L + Sbjct: 854 ------MNPHGFPSRMTIGKTIEIILSK-------------------------------- 875 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 G +F I + L+ ++G+ +Y+G TG + Sbjct: 876 -------SGCISGKFKDGSIFKKININTIVKSLRSFGFVSNGEDFMYNGITGNLINNQIY 928 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G ++ +L H+V DK+H+R+TG S +T QP+ G+++ GG RFGEME L ++GA+ Sbjct: 929 SGIVFYQRLKHMVKDKIHSRATGIKSKLTYQPVEGRSKGGGLRFGEMERDCLISFGASEL 988 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIV----DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + L + SD + I+ + + +P + +LL+E++S+ I L Sbjct: 989 ALDRLLLNSDCYEAKFDKNSGIIHTSNSNTNVVAVKIPYACKLLLQELQSMNIIARLNFN 1048 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 135/958 (14%), Positives = 301/958 (31%), Gaps = 124/958 (12%) Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT 216 + K + +++RI + D +LF+RI+ ++K ++ + Sbjct: 57 IGTFFEKNIGNTVTPFHSRI-----KDTTYSIDIYSDLFIRINNKKKFINNNLIFKIPLM 111 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 + + + K + + E F I+ KV + + + + R + Sbjct: 112 LKCNRCILYGK-------KEDFYIKINECPLDPGGYFIIKGTEKVILIQEKLVLNRIGIE 164 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 +K V Y + I E+ +E + + L G + + Sbjct: 165 KDKSGNFYSYVISSYKKRNTKSFIIIKENKIYFRNKIFIE-DIPIFIILKAFGFENNLDI 223 Query: 337 FTNDLDHGP----YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE 392 Y ++ ++ + + + + E + F F++E Sbjct: 224 IDLIGYEFESTLFYSLTESLKIGFVNQFQSVCYLMQKL---DIRFIETNKITF---FYNE 277 Query: 393 DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR 452 Y + + ++ + + + +++KL+ +D D+ GN+R Sbjct: 278 SNYQILD---HILSHIIVNKNPVSQNLEKGIFMTMMIRKLLYALQIPDLLDSKDYYGNKR 334 Query: 453 IRSVGEMAENQFRVGLVR--VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 + G++ E L + +E +++ + I + IS ++ F + Sbjct: 335 LELSGDLVEILLEDLLHKSWIESKKFIEKKKIEVNETIYHHFIKSDFISYGIENAFITGN 394 Query: 511 LS------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 Q + + + +S + + S+ + R R++HPT + + Sbjct: 395 WKINKYGIDKNGITQILSRLSFMSSFSMLLKTSS----NFEKTRKSISPRNLHPTQWRFI 450 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY---V 615 C +TPEG + GLI +L++ + + + ++ + S NY Sbjct: 451 CTSDTPEGESCGLIKNLALLSHISIQEND--YFLAKVCNILGVDSKLSSIKTIKNYLNMT 508 Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL-EHD 674 N L F + C + + ++ S LI L + Sbjct: 509 KIFLNQKLIGFHQFPSKFLFCFRNMR-------RSNLIESSVSIYWDSTMKLIWILSDKG 561 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR--- 731 R L + + + + + G ++Y+D++ Sbjct: 562 RLCRPLY----------IIENGILKSKKKHLKLYSKKIINWNILTKFGFIEYIDSNEENN 611 Query: 732 ---------IVIKVNEDEMYPGE---AGIDIYNLTKYTRSNQNTCINQMPCVS------- 772 I + + E+ G + + + +S +NT M S Sbjct: 612 TIIADSLKAINFRSSHLEISEGNILGISASLIPFSDHNQSPRNTYQCSMGKQSASFLGFN 671 Query: 773 --------------LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 +P+ + +L G+ G N ++ M + GY+ ED+I++ Sbjct: 672 QNSRIDITLSLLIYPQKPILKTKILN---LIGAGKCPTGINTCISIMSFTGYDVEDAIIL 728 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE--SGIVYIGAE 876 ++ V+ F T +++ + + + N E L++ + I + Sbjct: 729 NKSSVERGFFKTAFLRKTKIEISSFRHLTQLFSKVNHNNKE-VFEFLNKSNNNNQKITSN 787 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV--IDVQVF 934 + D LV K LT + L+R + D K SS G+ G + F Sbjct: 788 LKYSDNLV---VVKYGLDLTLAKFLIRECRNPEIGD-KFSSRHGQKGICGFIKPQQDMPF 843 Query: 935 TRDGVEKD--------KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 + G+ D + I + K + + +F +I + + + Sbjct: 844 SEKGICPDIIMNPHGFPSRMTIGKTIEIILSKSGCISGKFKDGSIFKKININTIVKSLRS 903 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 D + NQ+ Y LKH + K+ ++ I P Sbjct: 904 FGFVSNGEDFMYNGITGN-LINNQIYSGIVFYQRLKHMVKDKIHSRATGIKSKLTYQP 960 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 65/453 (14%), Positives = 145/453 (32%), Gaps = 68/453 (15%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV-FPIQSYSGNSELQYVSYRLGEPVF---- 80 L+ Q++S+ K I Y L + + + I +Y+ E+++++ + F Sbjct: 11 GLIWQQIESYNKLI------NYQLISILKKIENEIWNYNSFLEIKFINTSMSIGTFFEKN 64 Query: 81 -----DVQECQIRGVTYSAPLRVKL-----------------RLVIYEREAPEGTVKDIK 118 +I+ TYS + L ++ + + + Sbjct: 65 IGNTVTPFHSRIKDTTYSIDIYSDLFIRINNKKKFINNNLIFKIPLMLKCNRCILYGKKE 124 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 + + + E PL G F+I GTE+VI+ Q + + + SG + + +I Sbjct: 125 DFYIKINECPL-DPGGYFIIKGTEKVILIQEK----LVLNRIGIEKDKSGN--FYSYVIS 177 Query: 179 YRGSW--LDFEFDPKDNLFVRID-RRRKLPATIILRALNYTTE-QILDLF---FEKVIFE 231 F ++ ++ R +P IIL+A + I+DL FE +F Sbjct: 178 SYKKRNTKSFIIIKENKIYFRNKIFIEDIPIFIILKAFGFENNLDIIDLIGYEFESTLFY 237 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 L++ V + + IR +E + + Y Sbjct: 238 SLTESLKIGFV-----------------NQFQSVCYLMQKLDIRFIETNKITFFYNESNY 280 Query: 292 -IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 I +++ ++++ + +++ + L + + +S Sbjct: 281 QILDHILSHIIVNKNPVSQNLEKGIFMTMMIRKLLYALQIPDLLDSKDYYGNKRLELSGD 340 Query: 351 LRVDPTNDRLSA--LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 L D L + + + ++ F S + G K N Sbjct: 341 LVEILLEDLLHKSWIESKKFIEKKKIEVNETIYHHFIKSDFISYGIENAFITGNWKIN-K 399 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 ++ + ILS+ + L+ + + Sbjct: 400 YGIDKNGITQILSRLSFMSSFSMLLKTSSNFEK 432 >UniRef50_UPI0000E487B4 PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide B n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E487B4 Length = 830 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 67/275 (24%), Positives = 100/275 (36%), Gaps = 70/275 (25%) Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 V S + Y + + ++NP G PSR +G I + + Sbjct: 609 VCSIVWK-----YFCHFSVPQ-IMNPHGFPSR---------------MTVGKLIEFLAGK 647 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 + +G F G K + Sbjct: 648 ---------------------------------------AGVLEGKFHYGTAFGGDKVVD 668 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 I E L+ G+ L G TGE + G +Y KL H+V DKMHAR+ G +++ Sbjct: 669 ICEDLRKHGFNYLGKDFLTSGITGEPLTAYIYFGPVYYQKLKHMVLDKMHARAKGPRAVL 728 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRT------KM 1304 T+QP G+A+ GG R GEME L YGA+ L E L + SD DV G Sbjct: 729 TRQPTEGRARDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFQVDVCGDCGLIGHSGW 788 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + +P + +L +E++S+ I L Sbjct: 789 CPYCHCSQNISSLRIPYACKLLFQELQSMNIIPRL 823 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 83/513 (16%), Positives = 173/513 (33%), Gaps = 61/513 (11%) Query: 184 LDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTE------QILDLFFEKVIFEIRDNK 236 +D E+ +R + ++P + T + ++ + + + I Sbjct: 131 VDIEYTRGQQRVIRNNLPIGRMPIMLRSSNCVLTGKSPAELAKLNECPLDPGGYFIVRGT 190 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 ++ L+ E+L +++ G V R R V +++ Y+ Sbjct: 191 EKVILIQEQLSKNRMIVEVDRKGIVSCNVTSSTHERKSR-----TVVIVKKGKHYLKHNT 245 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +D + A ME +++ + + E Sbjct: 246 FTEDIPI---VVIFKAMGMESDQEIVQTIGTEESTMVSFASN---------LEECHKIQV 293 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 +L AL + +R + +S + L+ + ++FN Sbjct: 294 YTQLQALKYMGMKVRQRRMWGGGSKKSKVDEARELLATTILAHIPVVQFNFR-------- 345 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 + +++++I+ + +VDD D+ GN+R+ G++ F + +K Sbjct: 346 ---AKSIYLALMVRRVIEAQGDAVKVDDRDYYGNKRLELAGQLIALLFEDLFKKFNSELK 402 Query: 477 E---------RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-MDQNNPLSEITH 526 + R + D+ M QD I I+A G+ + +F M++ ++ Sbjct: 403 KYADQNIPRPRAAQFDIVKYMRQDQITNGLITAIST---GNWSVKRFKMERAGVTQVLSR 459 Query: 527 KRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 IS LG + R R + P+ +G +CP +TPEG GLI +L++ Sbjct: 460 LSYISCLGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLIKNLALMTHI 519 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNL----DEEGHFVEDLVT 635 E P K+ + + +H +S E + + N N+ E + Sbjct: 520 TT-DMEEAPIVKLAFNLGVEPVHLMSGEELSMKDVYVVFLNGNILGVVREHKRLMRTFRL 578 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 R G S F ++ + S G + Sbjct: 579 VRRAGYISEFVSICPNHAQRCVT-IASDGGRVC 610 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 71/438 (16%), Positives = 135/438 (30%), Gaps = 51/438 (11%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 K ++ + P L V L+ +DSF FI + A +S FP ++ L Sbjct: 37 KAVKDKWKLLPAFLKVRGLVRQHIDSFNYFINVEVFSMN--FAPLQSTFPAEALP---YL 91 Query: 69 QYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKL-----------------R 101 QY++ +G P EC++R +TYSAP+ V + R Sbjct: 92 QYLNIYVGSPDVEESFNITKPTSPHECRLRDMTYSAPITVDIEYTRGQQRVIRNNLPIGR 151 Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 + I R + + + E PL G F++ GTE+VI+ Q S Sbjct: 152 MPIMLRSSNCVLTGKSPAELAKLNECPL-DPGGYFIVRGTEKVILIQEQLSKNRMIVEVD 210 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQI 220 K S V + R S + +P +I +A+ + ++I Sbjct: 211 RKGIVSCNVTSSTH---ERKSRTVVIVKKGKHYLKHNTFTEDIPIVVIFKAMGMESDQEI 267 Query: 221 LDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD 280 + + + E ++ + + + V + R + + Sbjct: 268 VQTIGTEESTMVSFASNLEECHKIQVYTQLQALKYMG---MKVRQRRMWGGGSKKSKVDE 324 Query: 281 DVKLIEVPV-----EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK---- 331 +L+ + Y+ +I A + +D + Sbjct: 325 ARELLATTILAHIPVVQFNFRAKSIYLALMVRRVIEAQGDAVKVDDRDYYGNKRLELAGQ 384 Query: 332 RIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFS 391 I LF + + +A +I + MR + + +S Sbjct: 385 LIALLFEDLFKKFNSELKKYADQNIPRPRAAQFDIVKYMRQDQITN--GLITAISTGNWS 442 Query: 392 EDRYDLSAVGRMKFNRSL 409 R+ + G + L Sbjct: 443 VKRFKMERAGVTQVLSRL 460 >UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=Rhodospirillales RepID=D1GLJ0_GLUDI Length = 325 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 140/326 (42%), Positives = 190/326 (58%), Gaps = 29/326 (8%) Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+INGTERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++ Sbjct: 1 FIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAARVIPYRGSWLDFEFDSKDLIY 60 Query: 196 VRIDRRRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIF 230 VRIDR+RKLP T +L AL ++IL F+ +V+F Sbjct: 61 VRIDRKRKLPVTTLLYALEGASSAAARAAKVAEGGDVDALEIRGMDADEILGYFYNQVVF 120 Query: 231 EIRDNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 E RG + +G+V E ++TAR +R++ + +++ P Sbjct: 121 TKGPKGWARPFDAESFRGLKLLEPLVDAQSGEVVAEADAKLTARMVRKIAETTKEVLVGP 180 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 I G+ VA D ++ TGE+ A EL+ L L ++G ++ TL + +GP+I Sbjct: 181 AGLI-GRYVAHDLVNMETGEIYAEAGEELTEARLEALEEAGVDQLPTLAVDA-SNGPWIR 238 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 TL VD R AL +IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR+K N Sbjct: 239 NTLTVDKNTSREDALTDIYRVMRPGEPPTPETAEAMFSGLFFDADRYDLSAVGRVKMNMR 298 Query: 409 LLREEIEGSGILSKDDIIDVMKKLID 434 L + + +L K+DI+ +K + + Sbjct: 299 LGLDAPDTIRVLRKEDILRTVKIMCE 324 >UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus RepID=Q6YH81_9VIRU Length = 1221 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 112/311 (36%), Gaps = 66/311 (21%) Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 D+ K+VKV L R + GDK A KG + EDMP+D+NG D+++NP Sbjct: 966 DVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKNGVVPDLIINP 1025 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 + + + Sbjct: 1026 H---------------AFPSRMTVNYLLQMCFGTAA------------------------ 1046 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFD-GAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 + G F+ +I E K + LY G TG Sbjct: 1047 ---------------CKLGKTYDATAFEREDVVRDIAEAAKEAGIDCW-DSVLYSGSTGR 1090 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + + +L H+V KMH+R+ G +T+QP+ G+++ GG + GEME W Sbjct: 1091 RLPTKIFMAPCPYQRLRHMVSGKMHSRTHGPTDALTRQPVAGRSREGGIKIGEMEQWCKI 1150 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKM----------YKNIVDGNHQMEPGMPESFNVLLKE 1329 ++G + +L+E + SD Y + D +P + +L +E Sbjct: 1151 SHGVSESLKESVYDTSDKYEVPVCKECGRISDHFEYCRMCDATDVSLVKLPYTTKILFQE 1210 Query: 1330 IRSLGINIELE 1340 +RS+GI+I + Sbjct: 1211 LRSIGISIAFK 1221 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 118/681 (17%), Positives = 218/681 (32%), Gaps = 125/681 (18%) Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 + + R +L EI G + + + ++K++ D +G G D D L N+R+ + G + Sbjct: 384 SKEDYVRHILAGEIFLHGGDAAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLI 443 Query: 461 ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI-NAKPISAAVKEFFGSSQL-------- 511 L + + + S G L P ++ N+ ++ ++ F + Sbjct: 444 AFLLDGLLKQYVKLFVK--SAGCQKNLCPYTVLQNSMVMTNSLHMCFATGNWTVKRLGPP 501 Query: 512 -------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 564 SQ + NN + ++H RRI ++ +R +H +HYG +CP ETP Sbjct: 502 SYVRVGVSQVLSNNNYGARVSHLRRI----MHAVSFRGKNIRMRQLHSSHYGFLCPYETP 557 Query: 565 EGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG-----NYVIAQA 619 EG +G++ +++ LETP V V + L EG + A Sbjct: 558 EGEKVGIVLNMA----EGVGFSLETPREAVLATVRLGK--GLPGFFEGAPARLAWSGAAG 611 Query: 620 NSNLDEEGH----------FVEDLVTCRSKGESSLFSRD-QVDYMD---------VSTQQ 659 ++++D +G FV + C + ++ + + + Sbjct: 612 SASVDVDGVLCGVTGDPVGFVREARLCLLGVSVVWKKVEREIHLLGCQGRFVRRVLDPEG 671 Query: 660 VVSVGASLIPFLEHDD--ANRALMGANMQRQAVP----TLRADKPLVGTGMERAVAVDSG 713 + P E D + A + P + + G + Sbjct: 672 IRGSRYDNPPPPEERDIEMDPAPSSSPSDFLPRPPGVYVCAQELSVCSLGDGEYADPPAS 731 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT-KYTRSNQNTCINQMPCVS 772 V+ + D ++ + M G N + +Y + Q V Sbjct: 732 EILTDAMSSVIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLDYPQKSLVD 791 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 G E+A G VA M G+N EDS++++ + F+ + Sbjct: 792 SRSVKRLG----------FDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVT 841 Query: 833 IQELAC-VSRDTKLGPEEITADIPNVG----EAALSKLDESGIVYI---GA--------- 875 + ++C R TK E + +P+ G E L + G++ GA Sbjct: 842 YRTVSCADKRRTKYDSEVV--CLPDWGLRNREWDYDLLGDDGVIDPLCAGALVRRVEGKR 899 Query: 876 ----------------------EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 + G +LVGKV+ ++ E Sbjct: 900 KAAKRPVDQRTGGGPAGLCDALWIPAGTVLVGKVSH--------------SLGPEGNPVR 945 Query: 914 KDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973 +D+SL V G + V V +K + + K S Q G Sbjct: 946 RDASLTVKQSEEGYLDRVTVDVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVL 1005 Query: 974 RIRAVLVAGGVEAEKLDKLPR 994 + L P Sbjct: 1006 TQEDMPFDKNGVVPDLIINPH 1026 Score = 59.9 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 69/232 (29%), Gaps = 55/232 (23%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP------- 78 + ++SF + + E +++ + R P Sbjct: 96 NFVRHHIESFDDMLWNEFPAMVAREKPV--------SVKGYRVKFGTVRYEPPCPDGKPW 147 Query: 79 -VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT------ 131 + TY + L + + +I + + +IP+M Sbjct: 148 EKLTPAMARRTDATYHSAAVCDLTVTDPK-------GLEIVYPRLELCKIPVMVGSAVCW 200 Query: 132 ---------------DNGTFVINGTERVIVSQLHRS---PGVFFDSD-KGKTHSSGKVLY 172 G F+I G ERV+V + + P V+ + D S Sbjct: 201 TRTEGSPLPGECPSDPGGYFIIKGKERVVVPHIRPAYDQPCVYKNCDGWLCEFRSVNRET 260 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQILDL 223 ++ + + D + L + ++ +P ++ +AL T + + + Sbjct: 261 RQTVL------VQAKTDCRRKLEFSLPYIKQYVPVGLVFKALGKTAREAVAM 306 >UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax=Plasmodium RepID=RPOB_PLAFA Length = 1024 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 129/846 (15%), Positives = 295/846 (34%), Gaps = 20/846 (2%) Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +++ K I L E I +L + + N + + + T Sbjct: 2 IYIVNPILVKNNYIISNLYLLLIQEIIYNLRYYILFLNNNINVKFNFIYYKIIILLTNIN 61 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 + + +I + + + +I + I + Sbjct: 62 INSIDTIQNINNLLKIILTLKLNFININKIIKFNILIFILPFIYNNIIILNGLYKTCIQL 121 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + + + K + I L + + ++ Sbjct: 122 FKKNNKIFIIKFKNNNKNIIYVYIYISLGLRIIFKISKLNIDCYFNNFKFNFLILLLYLN 181 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRM-----KFNRSLLREEIEGSGILSKDDIIDV 428 + N ++ + + + N + + + I++ Sbjct: 182 NIYINKNISLFIYNNIINKKILIYNYIKFIYSKYNNINNIISLKLFIIKLNKFNNIYINL 241 Query: 429 MKKLIDIRNGKGEVDD--IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT 486 + L I+ D I+++ N++ S+ + + + L + + L++ Sbjct: 242 LNILFSIKLNFSYYSDFYINNIYNKKFYSIIDNLLIKSKKYLKIFKYQL---LNINRNIY 298 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 ++N K + E + L Q+ DQ N LSEI K +I+ + G ++ + Sbjct: 299 NNITLLLNNKKYINIILENININPLVQYSDQVNNLSEINQKFKINMITTGLNSKFILNND 358 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 +R++ G + I T EG GL+N L+ N Y+ + + L Sbjct: 359 LRELPRNILGYISLINTNEGLTCGLVNYLTTNIFLNLKYLFVIYYKHIFYNRY-NFKLLL 417 Query: 607 SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGAS 666 + + Y I+ N L + +F + + +K + + Q + + + ++S + Sbjct: 418 NIFNKNFYNISFNNIYLKKNINFNKTTILTINKNTFKICNITQ-NIIYIPFNYLLSFIEN 476 Query: 667 LIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQY 726 LIPF+ ++D+ R LM M Q VP + + + T + ++ + G+V Y Sbjct: 477 LIPFIHYNDSIRNLMSIKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIISYQEGIVIY 536 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 V +I+I+ +++ + IY L Y + NQN + P V +GE V G +LA Sbjct: 537 VSCIKIIIR----DLFNRQI---IYYLNNYKKINQNILLIYKPIVWVGEKVNIGQILAIN 589 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 + E +LG N+ V + + GY +ED+I++S +++ + +T++H+ Sbjct: 590 SNLLNSEYSLGNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYEISLNIINNI 649 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET-QLTPEEKLLRAI 905 PE + ++ + + LD+ GI+ G + +IL+ K+ ++ + Sbjct: 650 PEICSINLSKMYYKNIKHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINFL 709 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 FG K K+ + G VI +++ K ++ + ++ + + Sbjct: 710 FGSKLRIFKNKPIISTIHDIGRVIKIEILPNHLYNKTEKNNIYLKFRIYIGIQKYLQLGD 769 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 + + ++ + L+ + ++ + N + Y Sbjct: 770 KICNRHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIGQIFEGIYGLNSLYL 829 Query: 1026 EKKLEA 1031 + Sbjct: 830 NTRYII 835 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 106/485 (21%), Positives = 185/485 (38%), Gaps = 70/485 (14%) Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 IV++G +V G IL L E L + S +I Sbjct: 573 IVWVGEKVNIGQIL-----AINSNLLNSEYSLGNNLLVGYG------SYLGYEYEDAIII 621 Query: 930 DVQVFTRDGVEKD---------KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 ++ + I E+ K + ++ L+ + ++ Sbjct: 622 SRKILYNNLYTSLHLNIYEISLNIINNIPEICSINLSKMYYKNIKHLDKYGIIKEGTYIL 681 Query: 981 AGGVEAEKLDKLPRD-------RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 A + KL +P + + + + + + ++ + ++ Sbjct: 682 ANNILISKLMFMPFIFNNKSLINIINFLFGSKLRIFKNKPIISTIHDIGRVIKIEILP-- 739 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 + ++Y+ +++ +Q GDK+ RHG+KG+IS I+ I D+PY N Sbjct: 740 -NHLYNKTEKNNIYLKFRIYIGIQKYLQLGDKICNRHGHKGIISYISEINDIPYLNNKIQ 798 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 DI ++ + +PSR+NIGQI E G+ + + + + I Y Sbjct: 799 PDIFISAISIPSRINIGQIFEGIYGLNSLYLNTRYIISNNLNKNYYNNYNHIFNYYKYNY 858 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + ++ + + L Sbjct: 859 NNNFNINSKMSYN----------------------------------------YNKYYLK 878 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 + TG + + +Y KL H++ DK R G YS +TQQP+ G + GGQRFGEM Sbjct: 879 NPFTGNMINNSICLNNIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEM 938 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEA+GA+Y +E T KSDD+ R + + + + E+F ++LKE++SL Sbjct: 939 EVWALEAFGASYLFKEFFTYKSDDIKSRKILKNYLFNNYKIKNTFISETFKLILKELQSL 998 Query: 1334 GINIE 1338 INIE Sbjct: 999 AINIE 1003 >UniRef50_B9F8X6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=B9F8X6_ORYSJ Length = 1115 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 106/828 (12%), Positives = 247/828 (29%), Gaps = 119/828 (14%) Query: 234 DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 ++ ++ E F ++ KV + + + R I + + V Sbjct: 222 KDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRIIIDTDSKGRVIASVTSSTHE 281 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLL--AKLSQSGHKRIETLFTNDLDHGPYISETL 351 K ++++ L + ++ + + + + D +G + ++ Sbjct: 282 IKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMESDQEVAQMVGRDPRYGDLLYPSI 341 Query: 352 RV---DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 + + + AL + + ++ S Sbjct: 342 QECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSK------------------SILRDV 383 Query: 409 LLREEIEGSGILSKDDII--DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + SG I ++++++D DD D++GN+R+ G++ F Sbjct: 384 FVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQLISLLFED 443 Query: 467 GLVRVERAVKERLSLGDLDT----LMPQDMINAKPISAAVKEFFGSSQL----------- 511 + E ++ L I I+ ++ + Sbjct: 444 LFKTMNSNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKRFRMHRKG 503 Query: 512 -SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 SQ + + + ++ + + RI+ + R R + P+ C ++G Sbjct: 504 VSQVLSRLSYMASLGYMTRIT----PQFEKTRKTSGPRALQPSQ----C-------YSLG 548 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV 630 + LS+ + E + + +G++ + + F Sbjct: 549 -VEDLSLLS--GEEIHASGSFLVMFNGLILGK--------------------HRQPQRFA 585 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + R G F V+ + S G + L D + + +Q Sbjct: 586 NAMRKLRRSGIIGEFVSIFVNEKQ-HCIHIASDGGRVCRPLIIADKGIPRVKEHHMKQLR 644 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE-AGID 749 +R+ + G+ + V+ + + ++D++ I+ Sbjct: 645 DGIRSFDDFLRDGLIEYLDVNE------------ENNALIALYEHEDQDDVQRSSITHIE 692 Query: 750 IYNLTKY--TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 I LT R++ + V P+ + +L GQN VA M + Sbjct: 693 IEPLTILGLFRADSLLYL----LVYAQRPLLTTKTI---ELVGYDKLGAGQNATVAVMSY 745 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL----- 862 +GY+ ED+I++++ + I +++ + G + + AL Sbjct: 746 SGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDRIVKPQRDKDGALLKQNM 805 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS--LRV 920 LDE G G + DI V K TP+ + + D KDS + Sbjct: 806 RALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDSG--------AHLTDRDYKDSPAVYKG 857 Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 +G + V V + + + + + + + K S Q G + Sbjct: 858 VDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPF 917 Query: 981 AGGVEAEKLDKLPRDRWLELG--LTDEEKQNQLEQLAEQYDELKHEFE 1026 + L P G + +K + + ++ + + Sbjct: 918 SERGICPDLIMNPHGFPSAFGEPSGNADKVEDISRTLVKHGFSYNGKD 965 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 16/175 (9%) Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 P + K +I L +G+ LY G G + V +G +Y KL H+V D Sbjct: 937 FGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKLKHMVLD 996 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 KMHAR++G L+T+QP G+++ GG R GEME L AYGA+ + E L + SD + Sbjct: 997 KMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLISSDPYQVQ 1056 Query: 1302 TK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +G + + MP + +L +E++++ + L+ Sbjct: 1057 VCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRLK 1111 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 66/432 (15%), Positives = 139/432 (32%), Gaps = 54/432 (12%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS-YSGNSELQ-YVS 72 F P L V L+ +DSF FI + G+ ++ I++ + + L+ Y S Sbjct: 97 FALLPAFLKVRGLVKEHIDSFNYFITK------GIRNIVKANNRIEARNNPSIFLRQYNS 150 Query: 73 YRLGEP---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 R+G P C++ TYSAP+ + + ++ + I Sbjct: 151 VRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKRKPNFI------ 204 Query: 124 MGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDS 159 +G +P+M G F++ GTE+VI+ Q S Sbjct: 205 IGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRIIID 264 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNY-TT 217 K V + I + F K+ +++++++ + +P ++++A+ + Sbjct: 265 TDSKGRVIASVTSSTHEIKSK----TVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMESD 320 Query: 218 EQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL 277 +++ + + E ER+ + + + +Y G + R L Sbjct: 321 QEVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSKSIL 380 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 V + V K + + + I A+ D + ++ +L Sbjct: 381 RDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGNKRLELSGQLISLL 440 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 DL S + + + + E E + R+ + Sbjct: 441 FEDLFKTMN-SNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAISTGNWDIKRFRM 499 Query: 398 SAVGRMKFNRSL 409 G + L Sbjct: 500 HRKGVSQVLSRL 511 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 73/181 (40%), Gaps = 12/181 (6%) Query: 926 GTVIDVQVFTRDGVEKDKRAL-EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G I ++ +T + + I + Q + L + ++ L+ F+ ++ + Sbjct: 766 GRCIAMKKYTVTKEKYEGGYSDRIVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDI 825 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 K + PR+ + G ++ + + + + R + D Sbjct: 826 YVNK--QTPRNTKRDSGAHLTDRDYKDSP------AVYKGVDGETTVVDRVMLCSDTDEK 877 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 ++K + + RR + GDK + RHG KGV I ED P+ E G D+++NP G P Sbjct: 878 LIIKCI---IRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFP 934 Query: 1105 S 1105 S Sbjct: 935 S 935 >UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB1_LEPTE Length = 1142 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 150/570 (26%), Positives = 254/570 (44%), Gaps = 23/570 (4%) Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILD---LFFEKVIFEIRDNKLQMEL 241 + D +I ++ K L+ L I L + + ++ + ++ Sbjct: 577 TYFRDISKICSAQITQQLKQ--KSFLKLLLINPRLISQNNLLVLNRAVNFLKKIQFNLKD 634 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 P + +F+I + + I K + Sbjct: 635 SPNL--NDYQNFEINKLKAHIFKCQIKTQNNLTCCKYIYIKTKFNYINLPIKQFFFTKRF 692 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRI---ETLFTNDLDHGPYISETLRVDPTND 358 + L+ + +L L + L + L N + P + + + + Sbjct: 693 LITEQKLLLGGKFINSNLALTSLLKLHKFSEVVSNSFLIYNANNPNPNPTSIMSMIRPVN 752 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + ++ R L + + + + L ++ + + Sbjct: 753 KSEIYRQLNRRFVRSRLQLNVLKSELTNSHSQLIKANNDPIDRELSI-QILKQDVQKSNP 811 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDID---HLGNRRIRSVGEMAENQFRVGLVRVERAV 475 K I + + + D + L +I ++ + + +++ Sbjct: 812 FNKKG--IYNQRFINKKFLDTSQFIDQELLHFLKTHKIFLDRQLTSLKTKQQNEKLKFIK 869 Query: 476 KERL-SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 ++L + + Q++I I+ A++E FG + LSQFMDQ NPLSEITHKRRIS++G Sbjct: 870 WKKLRNFKNALKNPIQNLITTNAINGALQELFGLNPLSQFMDQINPLSEITHKRRISSMG 929 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGG+ R+ A +VR +HPTHYGR+CPIETPEG N GL+NS ++YA+ N YGFLETP+ KV Sbjct: 930 PGGVNRDNASMDVRSIHPTHYGRICPIETPEGHNAGLVNSPTIYARINNYGFLETPFFKV 989 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV------EDLVTCRSKGESSLFSRD 648 G + + YL+A +E + ++ + + E E V R + + Sbjct: 990 NSGQIQAKAFYLNAQKEQKFKVSPPDLSCSELQFLPLGPTKIESEVPMRKDFKFQRMAAT 1049 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 Q++++ +S Q++SV SLIPFLEHDDANRALMG+NMQRQAVP L A++P+VGTG+E V Sbjct: 1050 QIEFIGISPLQMISVATSLIPFLEHDDANRALMGSNMQRQAVPLLIAERPVVGTGLEGRV 1109 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 DS K+ GV+ YV +++++ Sbjct: 1110 IADSSYIMQTKQSGVISYVSNEQVIVQTFH 1139 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 77/435 (17%), Positives = 158/435 (36%), Gaps = 47/435 (10%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VS 72 F + + L + L+ IQ SF + + GL+ + I++ + N +L + + Sbjct: 3 FSVKNKNLLIQNLVEIQQQSFNELLC------VGLKRQLLQLNFIENKTRNIKLIFHAKN 56 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 Y+ P +E ++ T+++ L + + I V +G +P MT Sbjct: 57 YKFILPEITPKEAVLKSKTFASALFIPVEY---------RAKNSIGLYWVLLGHLPFMTK 107 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG----------KVLYNARIIPYRGS 182 G F+ING RV+++Q+ RSPG+++ + + S ++ + IIP RG+ Sbjct: 108 RGHFIINGVPRVVLNQMVRSPGLYYKTTANPQNVSNQVSINDSSHTSPVFYSDIIPNRGT 167 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD-------- 234 WL E D K N+++R+ R K+P + L+AL Y I L + + Sbjct: 168 WLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLYSRKFLNCDYLLNTDHPA 227 Query: 235 ------NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 K+++E+ +++ A ++ + ++ I ++ KD + Sbjct: 228 DSNSALKKIKVEIEQQKVLKLAALEALDDDDPDIAKQLDYIEKTTTPEMGKDFLFQSFFN 287 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 + + +++ I + L+ + ++ KR T+ +D Sbjct: 288 PASYDLSPIGRFQLNKKLNLSIPSDYTVLTEFDIYFATKELIKRATTMSNSDDIDHLQTR 347 Query: 349 ------ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 E L + I + S ++ S V Sbjct: 348 RIRSCGELLEIQLGEGIERLQKTIIDKINNTNLKKFAKHSSTYKRGTSSSIYRQDRQVIN 407 Query: 403 MKFNRSLLREEIEGS 417 N L+ + Sbjct: 408 TDKNSKFLKNNLPTK 422 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 113/358 (31%), Gaps = 39/358 (10%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 ++ + +F + + LP A+ + LF L L+ Sbjct: 41 IENKTRNIKLIFHAKNYKFILPEITPKEAVLKSKTFASALFIPVEYRAKNSIGLYWVLLG 100 Query: 244 ER-LRGETASFDIEANGKVYVEKGRRITARHIR------------QLEKDDVKLIEVPVE 290 + F I +V + + R + + + + Sbjct: 101 HLPFMTKRGHFIINGVPRVVLNQMVRSPGLYYKTTANPQNVSNQVSINDSSHTSPVFYSD 160 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 I + + + + ++ L G+ Sbjct: 161 IIPNRGTWLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLYSRKFLNCDYL 220 Query: 351 LRVDPTNDRLSALVEI------YRMMRP--------------------GEPPTREAAESL 384 L D D SAL +I ++++ + T E + Sbjct: 221 LNTDHPADSNSALKKIKVEIEQQKVLKLAALEALDDDDPDIAKQLDYIEKTTTPEMGKDF 280 Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 FF+ YDLS +GR + N+ L +L++ DI K+LI DD Sbjct: 281 LFQSFFNPASYDLSPIGRFQLNKKLNLSIPSDYTVLTEFDIYFATKELIKRATTMSNSDD 340 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAV 502 IDHL RRIRS GE+ E Q G+ R+++ + ++++ +L + S+++ Sbjct: 341 IDHLQTRRIRSCGELLEIQLGEGIERLQKTIIDKINNTNLKKFAKHSSTYKRGTSSSI 398 >UniRef50_Q1L6B6 RNA polymerase II second largest subunit (Fragment) n=26 Tax=Spermatophyta RepID=Q1L6B6_9CARY Length = 667 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 91/640 (14%), Positives = 191/640 (29%), Gaps = 99/640 (15%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 K+P + DL + + + L + + + VY Sbjct: 52 KVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ----EKMSTNHVY 107 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD----------YIDESTGELICA 312 V K R+ + + P + +++++ YI + + Sbjct: 108 VFKKRQPNKYAYVAEVRSMAENQNRPPSTMFVRMLSRAGAKGGGSSGQYIKATLPYIRTE 167 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT-NDRLSALVEIYRMMR 371 + + L ++ +D + +L ++ AL I + Sbjct: 168 IPIIIIFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGA 227 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 TRE + + E L VG E ++ + Sbjct: 228 TVG-VTREKRIKYAKEILQKEM---LPHVG-----------VGEYCETKKAYYFGYIIHR 272 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMP 489 L+ G+ DD DH GN+R+ G + FR+ ++ R V+ + + Sbjct: 273 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDQGKDVNL 332 Query: 490 QDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRRISALGPGG 537 Q I AK I++ +K + SQ +++ S ++H RR+++ Sbjct: 333 QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS----P 388 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN--------------- 582 + RE + R +H + +G +CP ETPEG GL+ +L++ Sbjct: 389 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 448 Query: 583 --------------------EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 622 G P + + T+ +S N Sbjct: 449 STENFEACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAVIPQATKIFVNGC 508 Query: 623 LDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 V+ L R + + + V + + ++ + L + R Sbjct: 509 WVGIHRDPDLLVKTLRQLRRRVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQR 567 Query: 679 ALMGAN----MQRQAVPTLRADKPLVGTGMERAVAVDS---GVTAVAKRGGVVQYVDASR 731 L+ +Q++ P LV G + + + ++ + ++ Sbjct: 568 LLIKKKDIRALQQRESPDEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLITARLNPEE 627 Query: 732 IVIKVN-EDEMYPGEA---GIDIYNLTKYTRSNQNTCINQ 767 + E++P I + +S +NT + Sbjct: 628 AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 667 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 54/346 (15%), Positives = 110/346 (31%), Gaps = 59/346 (17%) Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK-EQEVYMGEIPLMTDN------- 133 + ++R +TYSAPL V + + ++ V + + +V++G++P+M + Sbjct: 7 PKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVSEAQDFTKVFIGKVPIMLRSSYCTLYQ 66 Query: 134 -----------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 G F+ING+E+V+++Q S + K K Y A + Sbjct: 67 NSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF---KKRQPNKYAYVAEV 123 Query: 177 IPYRG--------------SWLDFEFDPKDNLFVRIDR---RRKLPATIILRALNY-TTE 218 S + +++ R ++P II RAL + + Sbjct: 124 RSMAENQNRPPSTMFVRMLSRAGAKGGGSSGQYIKATLPYIRTEIPIIIIFRALGFVADK 183 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 IL+ L+ L +F I+ G+R + + + Sbjct: 184 DILEHICYDFSDTQMMELLRPSLEE--------AFVIQNQQVALDYIGKRGATVGVTREK 235 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 + + E + V + + + LL L + + Sbjct: 236 RIKYAKEILQKEMLPHVGVGEYCETKKA----YYFGYIIHRLLLCALGRRPEDDRDHYGN 291 Query: 339 NDLDH-GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 LD GP + R+ + + + G+ + A Sbjct: 292 KRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDQGKDVNLQFAIK 337 >UniRef50_Q4ZJA8 DNA-directed RNA polymerase n=3 Tax=Lymphocystivirus RepID=Q4ZJA8_FLDV Length = 1018 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 83/418 (19%), Positives = 141/418 (33%), Gaps = 66/418 (15%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 T + + + A D S + L+ L + VL + K + P Sbjct: 656 ITCYKTFVEIEKYKSKHDSELIAHPDFSIRNRDLDYSLLGKTG-VLDPKLGKKNKKYRCP 714 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHE-FEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 L ++L + + K + + D +I+KV Sbjct: 715 LCDALWFPAGTVLVGKVAKKLIDGVIVYRDVSLAVKADEEGYLDELLDHYTIETGRIIKV 774 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 L + + GDK A KG I EDMP+ G D+++NP Sbjct: 775 KLRSSKIPEIGDKFASFTAQKGTCGMIYRQEDMPFTAEGVVPDLIINP------------ 822 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 H + I + Sbjct: 823 ---HAFPSRMTINYILQMCYGLAACYT--------------------------------- 846 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 G F E + L L + + +Y G TG++F + +G Sbjct: 847 ------GKIYDATPFKRYNLTEELKELALELKLETWETTMYCGLTGKKFSSKIFIGPCDY 900 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +L HLV +K+H+R +G +T QP+ G++++GG + GEME W ++GA+ L+E L Sbjct: 901 QRLRHLVTNKIHSRISGPIDNLTHQPVAGRSRYGGIKVGEMEQWCKLSHGASAALKESLF 960 Query: 1293 VKSDDVN-GRTKMYKNI------VDGNHQMEPGM---PESFNVLLKEIRSLGINIELE 1340 SD K K I +E M P + +L +E+ ++GI+++ E Sbjct: 961 DMSDKYTIPVCKTCKTISDDFEYCRKCDDIEIEMKNCPYTSKLLFQELMAIGIHVQFE 1018 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 98/629 (15%), Positives = 193/629 (30%), Gaps = 100/629 (15%) Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 + + + S + ++ +L + G+ + D D L +R+ + G + E F Sbjct: 256 LKKEIFNHLEDHSPFNVACHLGYMINRLAAVTAGEAALTDKDDLAYKRVDTSGTLIEFLF 315 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMI-NAKPISAAVKEFFGSSQL------------ 511 + + R +K L + L P +++ N I+ + F + Sbjct: 316 KGLFKQYVRLIKNSLEI--LKNPDPINIVKNVNVITNGLNLCFATGNWSVKKTGPPSYMR 373 Query: 512 ---SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQ + +N S ++H RR+ + + F++R +H +HYG +CP ETPEG Sbjct: 374 VGVSQVLCNHNYGSRLSHLRRL----MHAVGFKGKNFKIRRLHASHYGFICPYETPEGER 429 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 +G++ + ++ ++ G+ ++I L Y+ + + G Sbjct: 430 VGVVLNTALSTAFSQ-------------GIPKNQIKPL----MEPYIKNSGSFKVILNGE 472 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 V + + V ++V P + ++ R Sbjct: 473 IVGYVDDPDQTIKF---------LKSVLPEEVSVFCYRFTP-----KIKECHVFSDKGRF 518 Query: 689 AVPTLRADKPLVG----TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 P L K + + + + T V+ + + + + M Sbjct: 519 LRPVLVESKIIRVCAQEIHHIKYKELPAYSTMTDVMASVIPFYNHAPSPRIAYQSNMGKQ 578 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 GI R + P +L + + G VA Sbjct: 579 AVGITTLT-GGRDRYDPTFYSLDYPQKALARTICYDRY-------KFDIMCHGAVPIVAV 630 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQEL-ACVSRDTKLGPEEI---TADIPNVGEA 860 +GYN EDS+++++ + F + +K E I I N + Sbjct: 631 STMDGYNQEDSVVLNKSSIDRGLFNITCYKTFVEIEKYKSKHDSELIAHPDFSIRN-RDL 689 Query: 861 ALSKLDESGI--VYIGA-------------EVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 S L ++G+ +G G +LVGKV K Sbjct: 690 DYSLLGKTGVLDPKLGKKNKKYRCPLCDALWFPAGTVLVGKVAKK--------------- 734 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 + +D SL V G + ++ + + + K S Q Sbjct: 735 LIDGVIVYRDVSLAVKADEEGYLDELLDHYTIETGRIIKVKLRSSKIPEIGDKFASFTAQ 794 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 G+ R + L P Sbjct: 795 KGTCGMIYRQEDMPFTAEGVVPDLIINPH 823 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 46/381 (12%), Positives = 118/381 (30%), Gaps = 49/381 (12%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQ 83 + L + ++S+ +F+ D + + + N +++ + + +P Sbjct: 2 LKRLTAHHIESYDRFLFFDIPAVVARDKIIQ--------TTNFVIEFKNIQYNKPKITPL 53 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE----------IPLMTDN 133 E + + +TY+ + ++ ++ + ++ + P Sbjct: 54 EAKQKDLTYAISINYEIDFNGKSTILEIFSLPLMLRSKLCLTNNVAHQTTFELCPN-DPG 112 Query: 134 GTFVINGTERVIVSQLHRSPGV----FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 G F++ G ERV++ + V + D S ++ +I R D Sbjct: 113 GYFIVKGKERVLIPHIRPRYNVPMVKYEDGFYLCEFRSASETGSSTLIQAR-------TD 165 Query: 190 PKDNLFVRIDR-RRKLPATIILRALNYTTEQILDL--FFEKVIFEIRDNKLQMELVPERL 246 K L + ++ +PA + + L + E+ L +K + E + L Sbjct: 166 GKIVLEFSLPYIKQFVPAGTVFKTLGISFEEAFLLCGLGQKNKHTLNCKSGYYEALSTIL 225 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 G + + V V+ ++ L K + + D S Sbjct: 226 YGHY-TGNKTVTDYVPVDVKCDNKESYVESLLKKE---------------IFNHLEDHSP 269 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 + C ++ ++ + L +D + E L + + Sbjct: 270 FNVACHLGYMINRLAAVTAGEAALTDKDDLAYKRVDTSGTLIEFLFKGLFKQYVRLIKNS 329 Query: 367 YRMMRPGEPPTREAAESLFEN 387 +++ +P ++ N Sbjct: 330 LEILKNPDPINIVKNVNVITN 350 >UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=Pseudomonas aeruginosa RepID=Q5ZH00_PSEAE Length = 364 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 129/176 (73%), Positives = 154/176 (87%) Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 + LMPQD+INAKP++AA+KEFFGSSQLSQFMDQNNPLSEITHKRR+SALGPGGLTRERAG Sbjct: 1 EGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAG 60 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 FEVRDVHPTHYGRVCPIETPEGPNIGLINSL+ YA+TN+YGFLE+PYR V D +VTDEI Sbjct: 61 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVKDSLVTDEIV 120 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 +LSAIEE ++VIAQA++ L+E+G V++LV R E ++ + + V MDVS +QV Sbjct: 121 FLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQV 176 >UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax=Theileria parva RepID=RPOB_THEPA Length = 1005 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 120/732 (16%), Positives = 256/732 (34%), Gaps = 37/732 (5%) Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 +K + +I ++ I++S ++ N L L +L + + Sbjct: 87 QIKFNNLKSRFINYNIINIPKINQSGDIIL---NGYLRLPILYLQLATNNISYIFNEKIT 143 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 + I + + V I + + S ++ V Sbjct: 144 RTYFIKIKNNIYLYIYLYDDFITVYINSYKIKNDLFSMYNNVSFKNKYINFSKIDNVIYV 203 Query: 401 GRMKFNRSLLR------EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIR 454 +K N DI+ ++ K +++ K + ++L N+ Sbjct: 204 MNLKNNNIKYHIFDKTININNFVNNTMFMDILSIVNKFLNLNLKKKFIQSSNNLINKSTN 263 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 SV + + ++V D L+ + I KE + + + Sbjct: 264 SV-------LKTIFRQFTKSVTIFDIEKYCDKLLYKKKIFRSFNIVLFKEHLLVNPVIHY 316 Query: 515 MDQNNPLSEITHKRRISALGPGGLT--RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 DQ N LS +T+K +I+ G + + + +R + + G + + TP+G GLI Sbjct: 317 TDQLNVLSYLTNKFKINIFGYSNSSNDKFKVSTNLRKIQSDYIGFINIVNTPDGDTCGLI 376 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN-SNLDEEGHFVE 631 + L+ +++ + + + + Y + N N+ + F Sbjct: 377 SKLANNTILDKFKL----KLINCNNEYFENFTKIDITSKNLYNMTSNNFINIKKNSTFKV 432 Query: 632 DLVTCRSKGESSLFSRD-QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + E L + D +++ +S+ +IPFL ++D R LMG+ M QA+ Sbjct: 433 KQIEVFKNNEFKLINFDKNKTNKNLNVFNTLSITELIIPFLFNNDPCRGLMGSKMHTQAL 492 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 P + + P V T + + G++ V+ +I++ +++ Sbjct: 493 PLIYNEHPYVMTKYNHMNGLLFNKCITSLCEGIIVSVNNYKIIVMDDKNRYLH------- 545 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y L + + N+ ++ P V +GE + G +LA E LG N + + +NGY Sbjct: 546 YYLYPFNVLDYNSFVSYKPIVWVGEKINIGKILALPSDLKHSEFTLGVNNLLNYSFYNGY 605 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT-ADIPNVGEAALSKLDESG 869 ED+I++++ ++ ED T+I KL E+T + ++E G Sbjct: 606 EHEDAIVINKNLIIEDILTSISFDVYEEYLSINKLDYVELTLRHLLEYNRYNRYLINEVG 665 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD--VKDSSLRVPNGVSGT 927 + + GDIL K+ + + + + ++ V L + G G Sbjct: 666 VSSNQDYMLFGDILSTKIRYELSLSKNKKFFKVFKLIFKENKKLIVYTKPLTIKRGGEGR 725 Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 +I ++ G K ++ + +I + ++ GV ++ Sbjct: 726 LIKYEIL---GYSKFRQLDAMYPEINVSYLTLRFFIFKIDRINIGDKLCGRHGNKGVVSK 782 Query: 988 KLDKLPRDRWLE 999 +D + Sbjct: 783 IVDNIDLPYTFR 794 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 113/577 (19%), Positives = 197/577 (34%), Gaps = 87/577 (15%) Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 G L L N M YN + +L ++ + + + + D K Sbjct: 484 GSKMHTQALPLIYNEHPYVM--TKYNHMNGLLFNKCITSLCEGIIVSVNNYKIIVMDDKN 541 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 NV + S + IV++G ++ +GK+ E L Sbjct: 542 RYLHYYLYPFNVLDYN-SFVSYKPIVWVGEKIN-----IGKILALPSDLKHSEFTLGVNN 595 Query: 906 FGEKASDVKDSSLRVPNGVSGTVID-----VQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 + VI+ + T + + L I ++ + Sbjct: 596 LLNYSF------YNGYEHEDAIVINKNLIIEDILTSISFDVYEEYLSINKLDYVELTLRH 649 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL-------------GLTDEEK 1007 E L + + + + L L +++ Sbjct: 650 LLEYNRYNRYLINEVGVSSNQDYMLFGDILSTKIRYELSLSKNKKFFKVFKLIFKENKKL 709 Query: 1008 QNQLEQLAEQYDELKHEFEKKLE--AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 + L + + ++ +K R++ ++ ++ RI GDK Sbjct: 710 IVYTKPLTIKRGGEGRLIKYEILGYSKFRQLDAMYPEINVSYLTLRFFIFKIDRINIGDK 769 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 + GRHGNKGV+SKI D+PY G + +P+G +R+N+GQ LE G Sbjct: 770 LCGRHGNKGVVSKIVDNIDLPYTFRGLCPYSITSPIGALARINLGQFLEGSCGYFGLNFN 829 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 +I A + +++ ++ Sbjct: 830 CRIKAPINLYNYHLYSNMYLKNIFNSLNVYNNSY-------------------------- 863 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 + S + L D +TG Q + + Y LKL H K Sbjct: 864 ------------------INFSIEKYLRDFKTGYQLKNFNLMLMPYFLKLMHTSKSKFQY 905 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1305 R+ G YS +TQQP+ GK G Q+FGEMEVWALE++G+AYT++E+ +K++ + + Sbjct: 906 RTVGKYSSLTQQPVKGKRVNGSQKFGEMEVWALESHGSAYTIRELGYIKTNVKYFKKFEH 965 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 K E+F VL E++++ INI D Sbjct: 966 KGYKGS---------ETFKVLTLELKNVLININRVDN 993 >UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular organisms RepID=B2X2B9_CHLMO Length = 1661 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 92/208 (44%), Positives = 130/208 (62%) Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 ++I + + Y+L KY RSNQ+TC+ P V G+ VE GD+LAD ++ Sbjct: 242 TKIKVNSYKIIENCDNYLSMEYSLEKYHRSNQDTCLVHKPAVVEGQWVESGDLLADCSAS 301 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 GELALGQN+ + +MPW GYNFED+IL+SER+V +D +T+IHI+ ++KLG ++ Sbjct: 302 VGGELALGQNILIGYMPWEGYNFEDAILISERLVYDDLYTSIHIERYEVNIEESKLGMDK 361 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 IT +IP V +L L+ GI+ IG+ V GDILVGKVTP + + +KLL I + Sbjct: 362 ITREIPEVDSDSLKNLNSLGIIKIGSWVQEGDILVGKVTPVNKKNQSNYQKLLYLILDKT 421 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 S V+DSSLR P G+ VI +QVF + Sbjct: 422 VSPVRDSSLRAPKGIKAKVIGLQVFKNN 449 Score = 179 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 97/358 (27%), Positives = 151/358 (42%), Gaps = 51/358 (14%) Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 KL R+ KD +L + G+ + L ++ ++ Sbjct: 571 HNKLRRSEVILSEKTEKDKNLLY-------CKAPVALNKVGLAPSNKRLTWKKADNQKLN 623 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 + + + I + ++ + + ++ L + A Q Sbjct: 624 TEETNSINISINTKNNYHKSEGYINDPLTDGSLINETKKSHRSASVLDKGAFSLGEKALQ 683 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + K + + + + ++VYLA +RR+Q GDKMAGRHGNKG+IS Sbjct: 684 RSSTGQNLKTKKTGMQALYLK----STSSVSSIQVYLAERRRVQVGDKMAGRHGNKGIIS 739 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 +I PIED+P+ +GTP+D+VLNPLGVPSRMN+GQI E LG+A K +G+ + Sbjct: 740 EILPIEDLPFLPDGTPLDMVLNPLGVPSRMNVGQIYECLLGLAGKHLGENYKVFPFDE-- 797 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 GA+ + S + V Sbjct: 798 ------------IYGAEASRSFVYSKLYNASVKTGKT----------------------- 822 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 L + G+I LYDGRTGE F + +TVGY Y+L+L H+VDDKMH T + ++T Sbjct: 823 --WLFNPNLPGKIGLYDGRTGESFHQAITVGYAYILRLVHMVDDKMHCL-TPDHDVLT 877 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 55/95 (57%), Positives = 73/95 (76%), Gaps = 1/95 (1%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 +RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLT+KSDD++GR + Sbjct: 1563 SRSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGYGAAFTLLEMLTIKSDDMSGRMTL 1622 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + N++ G PESF VL+ E+++L ++I L Sbjct: 1623 WSNLILNKEIS-IGTPESFKVLICELQALCLDIGL 1656 >UniRef50_D2RIB2 RNA polymerase beta subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RIB2_ARCPR Length = 511 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 89/418 (21%), Positives = 167/418 (39%), Gaps = 38/418 (9%) Query: 204 LPATIILRALNYTTEQILDLF--FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 LP + + N + I + F + D + ++ L E F I + Sbjct: 113 LPVMVKSKICNLHPDNIDEALKAFRRTDNIPDDYEKKLCLAGEDPLDPGGYFIINGTERA 172 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA------ANM 315 V + + + E+ + EV + + E T I Sbjct: 173 LVTLEDLAPNKILLEKEEKYGEEFEVAKCFSQKAGYRALVVVERTRGNILEVTFPQLPKP 232 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + L+ L K I + + + + ++ E L V + A+ I R + PG Sbjct: 233 IQFVVLMRALGVESDKEIVEMVSTNPEIMKFMLENLEVAEVETQEEAIDYIGRRVAPG-- 290 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 ++ + + D++ L +G R + + + + ++ Sbjct: 291 ---QSRDYRIQRANQVLDQHFLPHLGTEPEARR-----------AKAFFLARMAEMVFEL 336 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD-------TLM 488 G DD DH N+R++ G++ E FRV L+R+ + VK +L T + Sbjct: 337 HLGLRREDDKDHYANKRLKLAGDLIEEIFRVALLRLIKDVKYQLERAKARGRPMKMTTAV 396 Query: 489 PQDMINAKPISAAVKEFF--GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 D++ + + + G + +SQ +D++N +S ++H RR+ + L+R + FE Sbjct: 397 RADVLTDRIMHPMATGNWVGGRTGVSQLIDRHNYMSILSHLRRVVS----PLSRSQPHFE 452 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 RD+HPT +GR+CP ETPEGPN GL+ + + YA+ + G E +K + + I Sbjct: 453 ARDLHPTQWGRLCPNETPEGPNCGLVKNFAQYAEVSV-GCDEENVKKTLFSLGVEPIR 509 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 85/282 (30%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD----- 81 L+ Q+DS+ +F+++ GL+ I+ N+ ++ +G+P+ Sbjct: 17 LVRHQIDSYNRFLDE------GLQRVIDEQRIIELDIPNTYVKLGRAWVGKPIVKEADGI 70 Query: 82 -----VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT----- 131 E ++R +TY+AP+ V+ ++V K+++ + V +G +P+M Sbjct: 71 RRLLLPAEARLRNLTYAAPIYVEAQVV--------DEGKELEWETVEIGMLPVMVKSKIC 122 Query: 132 -------------------------------------DNGTFVINGTERVIVSQLHRSPG 154 G F+INGTER +V+ +P Sbjct: 123 NLHPDNIDEALKAFRRTDNIPDDYEKKLCLAGEDPLDPGGYFIINGTERALVTLEDLAPN 182 Query: 155 VFFDSDKGK--------THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK-LP 205 + K S K Y A ++ R + L V + K + Sbjct: 183 KILLEKEEKYGEEFEVAKCFSQKAGYRALVVVER--------TRGNILEVTFPQLPKPIQ 234 Query: 206 ATIILRALNY-TTEQILDLFF-EKVIFEIRDNKLQMELVPER 245 +++RAL + ++I+++ I + L++ V + Sbjct: 235 FVVLMRALGVESDKEIVEMVSTNPEIMKFMLENLEVAEVETQ 276 >UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BKT9_9CRYP Length = 1129 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 84/431 (19%), Positives = 146/431 (33%), Gaps = 85/431 (19%) Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + D + + +E+ + + K L ++ + VL G + + Sbjct: 762 MEDAMIINKSSIERGFASSNVYNCFDLDIKPSLLKKSNFFKKKKTE--ENVLKTGDLLKK 819 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 +P++ W + +E D++K + + K + Sbjct: 820 GAPLVPKESWYSIHKKNEAFFCYNSSEKAIIDQIKIFSDIENNQNIEKNS---------- 869 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 + + +RR GDK A RHG KGV S + D+P+ + G +I+ NP G P Sbjct: 870 ----IKIRSRRRPLVGDKFASRHGQKGVFSYLYSSIDLPFTDLGMNPEIIFNPHGFP--- 922 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 + IG + +M+ + +GA D + F Sbjct: 923 ------------SRMTIGVILESMIGK----------------IGALDGVFHDTTPFRFG 954 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 + + A E L+ G Y G +GE F V + Sbjct: 955 Q-------------------NRAAIYHFGEKLRKSGFQFYGNEIFYSGYSGEPFSIDVFL 995 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G + +L H+V DK + G + +T+QP+ GK G RFGEME A+ G + L Sbjct: 996 GIVNYQRLRHMVLDKYQISNQGPKNSLTRQPIKGKKIGGSIRFGEMERDAILGQGCVFLL 1055 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQM-------------------EPGMPESFNVLLK 1328 + L SD R + K + + + +P LL Sbjct: 1056 HDRLQTSSDLHASRLNIEKGSFFDSEKPTSHTFFYKKKFFEKKVINRKILLPYVIKFLLI 1115 Query: 1329 EIRSLGINIEL 1339 E+ S+ + I Sbjct: 1116 ELASINLKINF 1126 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 98/792 (12%), Positives = 220/792 (27%), Gaps = 112/792 (14%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I K+ + + T L Sbjct: 145 GYFIINGMEKMIRLLIVPKKNISFTLSRLTNTSRGNLCTTLSCSFRSVDRLQTSRTLHLH 204 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS---ALVEIY 367 N + ++ + + I + + I E+L + D+ + I Sbjct: 205 YLTNGSIHARIIVQKKEFFIPVIMLIKSLMPISDKKIFESLTKTFSKDKFYRIRIMAMIK 264 Query: 368 RMMRPGEPPTREAAESLFENLFFSE---DRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 + T+ + +F + + D ++G +L E Sbjct: 265 DAHETCDLKTQISVLEFLGKVFKTSLQTNTIDAKSIGEKFLFNHILIHLGEDKEA-KVKL 323 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL----------VRVERA 474 ++ ++ KL+ ++ D+ D L ++ G + F+ E+ Sbjct: 324 LLFMINKLLSVQKKISIEDNPDSLSSQEFLLPGHLIMVYFKEKFESSLNFIFSQKEFEQN 383 Query: 475 VKERLSLGDLDTLMP------------------QDMINAKPISAAVKEFFGSSQLSQFMD 516 + + Q + +S E +S LS ++ Sbjct: 384 ISNNFNKEGKSFQKQFCTDFLSKAFMTTGKGLAQIISTGSYVSKFNHELSQTSGLSVSIE 443 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + N +++ R ++ G E R + P +G +CP+ TP+G G++N + Sbjct: 444 RINFGRFLSYFR---SIHRGKFFFELKNTSGRKLLPQSWGFLCPVHTPDGALCGILNHTA 500 Query: 577 VYAQTNEYGFLETPYRK------VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV 630 + L + K + + ++ S ++ FV Sbjct: 501 SSVLVSLSNPLNCDFFKKYFFRYLPKNFLKEKKISSSIFMIDGKILGF--IPKFFFKSFV 558 Query: 631 EDLVTCRS--------KGESSLFSRDQVDYMDVSTQQVVSVGASLIP------------- 669 + L T + E SR S + G L P Sbjct: 559 DKLRTEKVSVLGKISLGCEIFSISRFNRKCSFPSCILLSQDGRPLRPVKWFSFKKKKKFS 618 Query: 670 ---------FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 FL + + + L M + ++ Sbjct: 619 VFKKKNEKDFLNYCSEIEIIGTLEQCFLNIDNLDYQSSFFTKNMVGTHSEIEASNILSVI 678 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G + D ++ + + +M G Y + R + + P V P+ R Sbjct: 679 AGATPFSDLNQSPRNMYQCQMSKQSVGTPFYTF--WRRDDIKSFFLLNPQV----PICRN 732 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 ++ DG D G N V+ + + G++ ED++++++ ++ ++ Sbjct: 733 KIIQDGLQMDA--FPNGFNSVVSVITYTGFDMEDAMIINKSSIERGFASSNVYNCFDLDI 790 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + + L E ++ G + G LV P+E Sbjct: 791 KPSLLKKSNFFKKKK----------TEENVLKTGDLLKKGAPLV------------PKES 828 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 +A +SS + +++F+ ++ I+ ++ Sbjct: 829 WYSIHKKNEAFFCYNSS------EKAIIDQIKIFSDIENNQNIEKNSIKIRSRRRPLVGD 882 Query: 961 SEELQILEAGLF 972 + + G+F Sbjct: 883 KFASRHGQKGVF 894 >UniRef50_P33811 DNA-directed RNA polymerase 132 kDa polypeptide n=71 Tax=root RepID=RPO2_VARV Length = 1164 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 98/483 (20%), Positives = 171/483 (35%), Gaps = 87/483 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG---VEKDKR 944 P ++ K+ FG+ + S + N G +I Q R G V K Sbjct: 720 RPIVISKALETSKIAANCFGQHV-TIALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKH 778 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 +EI ++D S LE+ R+ A L +G A + + D Sbjct: 779 QVEIPLENFNNKERDRSNAYSKLESNGLVRLNAFLESGDAMARNISSRTLED-------D 831 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + NQ+ ++ ++ +++ ++ +L V V+V +RR GD Sbjct: 832 FARDNQIS------FDVSEKYTDMYKSRVERVQV--ELTDKV--KVRVLTMKERRPILGD 881 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA---- 1120 K R KG ++ I ++PYDENG D+++N + SR I ++E L A Sbjct: 882 KFTTRTSQKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAK 941 Query: 1121 ---AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 KG + + + +F ++ Y+ Sbjct: 942 PYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHLNPK---------------------- 979 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 E E+ + + + LYD T + + V G +Y L+L H Sbjct: 980 ------------LTEKELSDKI-------FCEKILYDPETDKPYASKVFFGPIYYLRLRH 1020 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 L DK R G + + +Q G+ + GG +FGEME L A+GAA T+ E+L +D Sbjct: 1021 LTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEED 1080 Query: 1298 VN------------------GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + V L ++ + G+ ++L Sbjct: 1081 YQDVYICENCGDIAAQIKSINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKL 1140 Query: 1340 EDE 1342 + E Sbjct: 1141 DFE 1143 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 101/634 (15%), Positives = 202/634 (31%), Gaps = 67/634 (10%) Query: 346 YISETLRVDPTNDRLSAL-VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 +I +L D + + + I R E T ++ +L +E S + + Sbjct: 247 FIRRSLSYDMPPEVVYLVNAIIDSAKRLTESITDFNIDTYINDLVEAEHVKQKSQLTINE 306 Query: 405 FNRSLLREEIEGSGI----LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM- 459 F +L + L +I +++K + D D + RI + G+ Sbjct: 307 FKYEMLHNFLPHMNYTPDQLKGFYMISLLRKFLYCIYYTSRYPDRDSMVCHRILTYGKYF 366 Query: 460 -------AENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS 512 EN + K R + ++ +N S +F S Sbjct: 367 ETLAHDELENYIGNIRNDIMNNHKNRGTYAVNIHVLTTPGLNHAFSSLLSGKFKKSDGSY 426 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE-GPNIGL 571 + + + I+ R + + F VR HP+ Y C + PE GP +GL Sbjct: 427 RTHPHYSWMQNISIPRSVGFY--PDQVKISKMFSVRKYHPSQYLYFCSSDVPERGPQVGL 484 Query: 572 INSLSVYAQT-----NEYGFLETPYRKVTDGVVTDEIHYLS---AIEEGNYVIAQANSNL 623 ++ LSV + +EY LE + D+I Y I N ++A N N+ Sbjct: 485 VSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDDISYFETGFPITIENALVASLNPNM 544 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMD-VSTQQVVSVGASLIPFLEHDDANRALM- 681 + FV D + G D ++ ++ L+ D +M Sbjct: 545 ICD--FVTDFRRRKRMGFFGNLEVGITLVRDHMNEIRINIGAGRLVRPFLVVDNGELMMD 602 Query: 682 -----GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 + + ++ + P V ++ S V ++ ++ + + + Sbjct: 603 VCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTFSNVCESVQKFRMMSKDERKQYDLCD 662 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL-------GEPVERG-------DV 782 E G + + + + ++ ++ G Sbjct: 663 FPAEFRDGYVASSLVGIN-HNSGPRAILGCAQAKQAISCLSSDIRNKIDNGIHLMYPERP 721 Query: 783 LADGPSTDLGEL---ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 + + + ++ GQ++ +A M + G N ED I++ ++ +Q + ++ Sbjct: 722 IVISKALETSKIAANCFGQHVTIALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKHQVE 781 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 +E A SKL+ +G+V + A + GD Sbjct: 782 IPLENFNNKERDR------SNAYSKLESNGLVRLNAFLESGD----------AMARNISS 825 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 + L F D S + + V VQV Sbjct: 826 RTLEDDFARDNQISFDVSEKYTDMYKSRVERVQV 859 >UniRef50_A9TCU8 Predicted protein n=6 Tax=Physcomitrella patens subsp. patens RepID=A9TCU8_PHYPA Length = 689 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 94/678 (13%), Positives = 205/678 (30%), Gaps = 92/678 (13%) Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + + V+ + ++ +K + I Y + + + C Sbjct: 43 YIVNLIKNITVDNNKIFNNVYVSSNQKTYQECINTLSTYECSIIADDRVVLTIPIPIGCC 102 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR---- 368 + ++ + Y++ + + + + + Sbjct: 103 YKPLEEASAIRGSFVIEGRKNVLMCQERNYTFRYLARKEKCELQLSKCHCEIYMVNGVLK 162 Query: 369 -MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL------- 420 + A + S R LS K LL E + L Sbjct: 163 VSLSHNNLVNIFAVMKVLRKTIASAKREILSWTNHPKEVSRLLLESQLDATTLDSNPTCS 222 Query: 421 ------------SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 + ++ + I+ + DD D L + + + ++ Sbjct: 223 TERILATLDDDKKVKMLSLMICRFIETILSLRQEDDRDCLSFKCVHTPADIVRRCIE--- 279 Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMD 516 R+ + ++++ + +N IS ++ F + SQ + Sbjct: 280 KRINKLNQQKIRSNSKQKAVIVSALNR--ISKDIQSNFKTGIWEGYTQGDNKRTISQVLS 337 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + L ++H RR+ +ERA +R +HPT G +CP ETPEGP++G + LS Sbjct: 338 SKSTLDSLSHVRRVEI-----SPKERASAIMRQIHPTQLGYICPCETPEGPDVGAVKYLS 392 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 TPY V V + + L + ++ + ++ V Sbjct: 393 STCTI-------TPY--VDSDDVLNHLGVLPQGNDALFINGLFVTRTSKDNVLRSIKVYK 443 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN---------MQR 687 R S ++ + + L A + +N Sbjct: 444 RKGEAFMFVSAYYSSDKEI---HIQTTRGRYSRPLLICTNGSAPVCSNTTVDNIYKANTL 500 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAV-----AKRGGVVQYVDASRIVIKVNEDEMY 742 + + + + T + + V + Y + ++ V + M Sbjct: 501 EMIDATEQMQCFIATTHDSICNQHTHVEIHPSFMFGLSASMTPYANFNQSSRIVFQSAMN 560 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 + ++ + ++ Q P + ++ + G N+ + Sbjct: 561 KQAMPLALHIMISMVSDSKILTYAQKPICA-------------TTISNTIKEYNGVNVVI 607 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 A + ++GYN EDS+L ++ + F++I + + + E IP+ L Sbjct: 608 AVLSYSGYNQEDSLLFNKSSIDRGLFSSIKYEVVEIIENKF---MNETLVYIPD--GDIL 662 Query: 863 SKLDESGIVYIGAEVTGG 880 D GIV IG +V G Sbjct: 663 R--DNDGIVLIGQKVKDG 678 >UniRef50_D1GLP0 RNA polymerase beta subunit (Fragment) n=1 Tax=Neoasaia chiangmaiensis RepID=D1GLP0_9PROT Length = 287 Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 131/289 (45%), Positives = 168/289 (58%), Gaps = 29/289 (10%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 TERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++VRIDR Sbjct: 1 TERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAARVIPYRGSWLDFEFDAKDLIYVRIDR 60 Query: 201 RRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDN 235 +RKLP T +L AL ++IL F+ +V F Sbjct: 61 KRKLPVTTLLYALEGENSIAARAAKAEEGGDVDAMPIRGMDQDEILGYFYNEVPFTRMPK 120 Query: 236 KLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 PE RG + G+V E ++TAR +R++ ++ +++ V + Sbjct: 121 GWARPFDPEAFRGLKLLEPLYDADTGEVVAEADAKLTARAVRKIAEN-TRVVLVGRADLL 179 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G+ VA D ++E TGE+ A EL+ LA L +G + L + HGP+I TL V Sbjct: 180 GRFVAHDLVNEHTGEIYAEAGEELTEARLAALEDAGVTELPMLSVDG-QHGPWIRNTLAV 238 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 D R ALV+IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR Sbjct: 239 DKNMSRDDALVDIYRIMRPGEPPTPETAEAMFRGLFFDPDRYDLSAVGR 287 >UniRef50_Q98S72 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S72_GUITH Length = 1109 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 89/476 (18%), Positives = 154/476 (32%), Gaps = 89/476 (18%) Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 L P ++ + L + V S + V F + +E+ Sbjct: 702 LFSVQIPICRNKINQDGLGLDNFINGFNAVVGVLSYSSFDMEDAVV-----FNKSSIERG 756 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 I + + L + L + G +K D + L Sbjct: 757 LGMSYIYNTSNFDVNLSMIKNLNKNYSTLHYNCLDGICNVGNALKKKDI--------ILL 808 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 ++ N+L + + + ++ KI + V + L KR+ Sbjct: 809 NNKLVNNKL----VRETTINYNNDEIASVDCVKILKNYSKIQSKHN-VMIRLKSKRKPIE 863 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK A RHG KG++S +E++P+ E G DI+ NP G PSRM +GM + Sbjct: 864 GDKFASRHGQKGILSFKYEVENLPFSETGIIPDILFNPHGFPSRMT--------IGMVIE 915 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 + K A+ + + F+ Sbjct: 916 SLSGKSGALNGNFNDSSPFTSFLNCNKSYI------------------------------ 945 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 E L+ G+ Y G G + V VG ++ +L H++ DK Sbjct: 946 ------------FGEFLRENGFEFYGKEMFYSGFVGLPLQTDVFVGVIHYQRLKHMILDK 993 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------ 1296 + + + +T+QP+ G+ G R GEME AL +G + L E + SD Sbjct: 994 FQVSNNSARNHLTRQPIKGRKLGGSIRLGEMERDALLGHGCIFLLHEKMQKSSDLHGVFI 1053 Query: 1297 -------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 N +K I + +P L+ E+ L +N+ + Sbjct: 1054 ENTNSDIKDLFFNKYNYNSKFLSTIKSY--PRKIFVPYVLRYLICELSVLNLNLNI 1107 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 115/869 (13%), Positives = 268/869 (30%), Gaps = 132/869 (15%) Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRA----LNYTTEQILDLFFEKVIF 230 +I+P + L + + + + I K + + + + L + Sbjct: 70 KILPRQSKELKITYQGEFIISINIQNNEKNFNLVYKEGDFPIMIKSLKCNLFGLKPHQLT 129 Query: 231 EIRDNKLQMELVPERLRGETAS-FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 EI + + + E I + + + V Sbjct: 130 EIDEEEFENGGYFITNGTEKLIRLIIVPRRNYIFTSSKISNTLRGKNFSSFACSIRCVNR 189 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH------ 343 ++ + S N E ++ L +F + ++ Sbjct: 190 YGLSRTFHLHYLTNGSILCRFIIRNQEFFFPVVIILKAIKDVSDTEIFKDITNNLHDNNM 249 Query: 344 -----GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 IS++ +N R + L I ++ + E +NL + L Sbjct: 250 FKEVAIKLISDSYNYIKSNFRDNYLEYIGKLFKIFEKKIHLNNLETGKNLIENN----LF 305 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 N+ L +I +++KLI R G ++ D + + I G Sbjct: 306 IHVENDMNQKYLL-------------LIYMIQKLIKSRMGLNLGENPDSIEFQEILLSGN 352 Query: 459 MAENQFRVGLVRVERAVK--ERLSLGDLDTLMPQDMINA-KPISAAVKEFFGSSQL---- 511 + + L +K E +++ + + ++ S ++ S + Sbjct: 353 LIGSILEKKLSANFDLIKIDEFMNIENSPIRKTKLIMKVFSNFSVGIRYLISSGNVPLIV 412 Query: 512 ----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 + +++NN ++ R ++ G R + P+++G +CPI Sbjct: 413 NFEIPQTSGFNISIERNNYSRFLSFFR---SIHRGKYFTTLKTTSGRKLMPSNWGYLCPI 469 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLE-TPYRKVTDGVVT-----DEIHYLSAIEEGNYV 615 TP+G G++N L++ + T+ +E + K T + S I + Sbjct: 470 HTPDGSLCGILNHLTISSITSVVNPIERINFLKYFKKHKTIFDRLSFKNRTSIILLDGKI 529 Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD-------QVDYMDVSTQQVVSVGASLI 668 I + + + D + C + +FS + +++ ++ S A L+ Sbjct: 530 IGFSTEIFLK---WFTDKIRCEKVSDFGIFSNSIEIVCLKNENILNLFELKIYSSEARLL 586 Query: 669 PFLEHDDAN--------------------RALMGANMQ-----RQAVPTLRADKPLVGTG 703 + + N L+G+ Q Q++ T + + L+ T Sbjct: 587 RPVRWNSFNSNFNKTNSKNESSFTYNFHTIELIGSLEQSYLNIHQSIFTKKGEICLLYTH 646 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 E + + G + D ++ + + +M GI +N+ + + + Sbjct: 647 YEID-----NLNIFSIVPGCTPFFDMNQSPRNMYQCQMAKQSIGIPFHNI--WRKMDSKI 699 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 S+ P+ R + DG D G N V + ++ ++ ED+++ ++ + Sbjct: 700 YF----LFSVQIPICRNKINQDGLGLDN--FINGFNAVVGVLSYSSFDMEDAVVFNKSSI 753 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 + + I N + LD GI +G + DI+ Sbjct: 754 ERGLGMSYIYNTSNFDVN-----LSMIKNLNKNYSTLHYNCLD--GICNVGNALKKKDII 806 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 L V+++++ N +V V++ + K Sbjct: 807 ------------------LLNNKLVNNKLVRETTINYNNDEIASVDCVKILKNYSKIQSK 848 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLF 972 + I ++ + + + G+ Sbjct: 849 HNVMIRLKSKRKPIEGDKFASRHGQKGIL 877 >UniRef50_D2EG08 RNA polymerase Rpb2 domain 6 n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG08_9EURY Length = 600 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 120/757 (15%), Positives = 232/757 (30%), Gaps = 198/757 (26%) Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 +V + D+ ++DL+ R +G+ +V+ + F + Sbjct: 5 FVNGVLSGATDDPNRLIKDLIEDRREGKI----PKEVN----------------VRFRKD 44 Query: 674 DDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 D+ ++ ++ R ++ KPLV + ++ G ++Y+DA Sbjct: 45 TDS--VMINSDSGRLLRALIVVKNGKPLVTKEDVQLLSEGHVTWQDLIDKGKIEYLDADE 102 Query: 732 IVIKVN---EDEMYPGEAGIDIYNLTKY----------TRSNQNTCINQMPCVSLGEPVE 778 + E+E+ P ++I L+ + SN + + + V G V Sbjct: 103 EELAYTALTEEELTPSHTHLEITPLSVFGTQASLLPFINHSNAHRNVTAVKSVQQGVGVY 162 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 N + ++ E I + ++ F + + Sbjct: 163 ST------------------NYLIR------HDNESMIAIDQQ------FPIVKTEMYEN 192 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 + + L + I + + + I++ K + E Sbjct: 193 ENFKSHLSGQNIVVAVLSYLGYNMDD----------------AIIINKS--------SVE 228 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 LLRA+F K L+ G S I A Sbjct: 229 RGLLRAMF---FRPYKVEDLKYVGGQS--------------------DLITIPDKDVAGY 265 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 + + L+ + I + + G V ++ ++ ++ + + Sbjct: 266 RSEDSYKYLDEDAIAAINSHVNDGDVLIGRISPPRFVSSID-KFRLGVQKQVESSIECRT 324 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 E + +T + K V + + R ++ GD R G KGV Sbjct: 325 GESG-------IVENVFVTSTSE----GNKYVSLKIRQDRPVEIGDIFGPRSGQKGV--- 370 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 +G +L QE Sbjct: 371 ------------------------------VGMLL---------------------NQED 379 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 + + +S E++ G + F G E +++ Sbjct: 380 MPFTYSGIVPDLIFSPYSIPSRMSMSYLLELIGGKVGALGGRHVDGTSFTGETEESLRQE 439 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L +G +Y+G TGE+ + + VG M ++L H V+ K+ R+ G L+ +QP Sbjct: 440 LMKYGFRENGVETMYNGITGEEMKVRIFVGDMTYIRLKHFVEYKIQWRARGPIQLLNRQP 499 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME-- 1316 GK++ GG R GEME AYG A L+E SD V +V + + Sbjct: 500 TEGKSKRGGLRLGEMEKDCFVAYGTALALKERF--DSDKVTIPVCSKCGMVAVYNVKKKT 557 Query: 1317 --------------PGMPESFNVLLKEIRSLGINIEL 1339 + SF +LL E++S+GI ++ Sbjct: 558 GYCPIDGEDAQIKLIEVSASFKILLDELKSVGIYPKM 594 >UniRef50_P15352 DNA-directed RNA polymerase subunit B'' n=25 Tax=Euryarchaeota RepID=RPOB2_HALSA Length = 523 Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 94/559 (16%), Positives = 212/559 (37%), Gaps = 70/559 (12%) Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ---EVYMG 125 + + + +Y+A L ++ V+ E+E E + D +++ V +G Sbjct: 8 ELSESYFSKERLAEHHFR----SYNAFLEHGMQDVVTEKERIETDIGDKEDEEPVWVELG 63 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 ++ +T +G+E ++ Q R + Y+A + Sbjct: 64 DVRAVTPRVR-EADGSEELLYPQEARLRNI---------------TYSAPVFMEMSIVRG 107 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 E + + L + ++P + + + + F ++ + EI ++ Sbjct: 108 GEEEEERVLDTTETKVGRMPIMV------GSDKCNISGFSDEELIEIGEDPADPGGY--- 158 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 F I + +V + + + + + I+V + + + E Sbjct: 159 -------FIINGSERVLMTSEDLAPNKILAEYDSKYGDEIQVAKTFSQRRGYRALVLVER 211 Query: 306 TGELICA------ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 E + + + L+ L + I + D + ++ E L + Sbjct: 212 NREGLLEVSFPSVSGSISFVTLVRALGLESDEEIVHRVSEDPEIVKFMLENLEEADVQTQ 271 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+ ++ + + G+ + + + DRY L + E E + I Sbjct: 272 EEAIEDLGQRVASGQGKNYQ-----LKRANYVIDRYLLPHLHE-------DGVEEEETRI 319 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 + + + ++ G+ E DD DH N+R++ G++ ++ FR L ++ R VK +L Sbjct: 320 NKAYYLCRMAEACFELALGRREADDKDHYANKRLKVSGDLMKDLFRTALNKLARDVKYQL 379 Query: 480 SLGDLDT-------LMPQDMINAKPISAAVKEFF--GSSQLSQFMDQNNPLSEITHKRRI 530 ++ ++ D++ + + G S +SQ +D+ + + ++H RR+ Sbjct: 380 ERANMRNRELTVNTVVRSDVLTERLEHPIATGNWVGGRSGVSQLVDRTDFMGVLSHLRRL 439 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 L+R + FE RD+H T +GR+CP ETPEGPN GL+ + + + ++ E Sbjct: 440 ----RSPLSRSQPHFEARDLHATQWGRICPSETPEGPNCGLVKNFAQAMELSQDVDDERD 495 Query: 591 YRKVTDGVVTDEIHYLSAI 609 ++ + + I +S Sbjct: 496 LKQELSSMGVEGIPGISME 514 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 61/411 (14%), Positives = 128/411 (31%), Gaps = 80/411 (19%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE------LQYVSYRLGEPVF 80 L S+ F+E G++ I++ G+ E ++ R P Sbjct: 19 LAEHHFRSYNAFLEH------GMQDVVTEKERIETDIGDKEDEEPVWVELGDVRAVTPRV 72 Query: 81 ----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 QE ++R +TYSAP+ +++ +V E E + + + +G +P+M Sbjct: 73 READGSEELLYPQEARLRNITYSAPVFMEMSIVRGGEEEEERVLDTTETK---VGRMPIM 129 Query: 131 T------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGK--- 163 G F+ING+ERV+++ +P K Sbjct: 130 VGSDKCNISGFSDEELIEIGEDPADPGGYFIINGSERVLMTSEDLAPNKILAEYDSKYGD 189 Query: 164 -----THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRI-DRRRKLPATIILRALNY-T 216 S + Y A ++ R + + L V + ++RAL + Sbjct: 190 EIQVAKTFSQRRGYRALVLVER--------NREGLLEVSFPSVSGSISFVTLVRALGLES 241 Query: 217 TEQILDLFFEK------------VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVE 264 E+I+ E + +L G+ ++ ++ V Sbjct: 242 DEEIVHRVSEDPEIVKFMLENLEEADVQTQEEAIEDLGQRVASGQGKNYQLKRANYVIDR 301 Query: 265 -KGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 + + + E K + A +A + + +++S DL+ Sbjct: 302 YLLPHLHEDGVEEEETRINKAYYLCRMAEACFELALGRREADDKDHYANKRLKVSGDLMK 361 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 L ++ ++ L+ + L V+ + + G Sbjct: 362 DLFRTALNKLARDVKYQLERANMRNRELTVNTVVRSDVLTERLEHPIATGN 412 >UniRef50_Q3LW79 Second-largest subunit of RNA polymerase III n=1 Tax=Bigelowiella natans RepID=Q3LW79_BIGNA Length = 1074 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 73/367 (19%), Positives = 137/367 (37%), Gaps = 65/367 (17%) Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + + L K + E+L E EK+ R + + Sbjct: 763 INKPITEPTKITFFEFLTRKKIIKNDSEEKLGENNFLSFSSKEKRFNILRSHLANSICMI 822 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 + + + + GDK + RHG KGV+ + P++ NG D ++NP G Sbjct: 823 TKK-SDIDLKYTLNHFPEIGDKYSSRHGQKGVVGLMGNKIHFPFNLNGQIPDFIMNPAGF 881 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 SR +G + ++ + Sbjct: 882 TSR---------------MTMGQVLESLFTKVV--------------------------- 899 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKE--AEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 L KG P + +F+ K + + L L D SG+ + + + G + Sbjct: 900 ------------LAKGNPFKSSIFESNKLYLKDCTQSLILCDTEFSGKETMINPKKGSIY 947 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + G ++ KL HLV +K+ +RS+G ++T+QP+ G+ + GG R GEME + A+ Sbjct: 948 NSTIFTGPIFYHKLKHLVSNKIQSRSSGRKHILTKQPVKGRGKQGGLRIGEMEKDCIIAF 1007 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH--------QMEPGMPESFNVLLKEIRSL 1333 G L E + SD I+D ++ + + +F +L +E+++ Sbjct: 1008 GCTSVLVERMLENSDSHKFILVKKSGIIDASNKKLSTTNKIYKNRISYAFKLLFQELQAT 1067 Query: 1334 GINIELE 1340 I+I ++ Sbjct: 1068 NISIRIK 1074 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 113/869 (13%), Positives = 254/869 (29%), Gaps = 109/869 (12%) Query: 154 GVFFDSDKGKTHSSGKVLYNA-RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRA 212 G F K Y+ +I + K++ +P + Sbjct: 74 GKNFKKFTPFISRLCKYSYSGILLIAINVETIKLNQFKKNDSKCYFINLGNIPILLRSLK 133 Query: 213 LNYTTEQILDLF------FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 Q+ + + I K + L+ E + +F + V + Sbjct: 134 CILNYAQVKKSICYGECPLDLGGYFILKGKERSILIQEIYKSSLFNFRLYKKNSVITKLF 193 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 + + + + + + ID + L + Sbjct: 194 MKYYKKIFKYKIIINKSKFTLSSN------LFNSEIDLIILLIALGLKEVKLYHFLNSIG 247 Query: 327 QSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFE 386 + + + +S+ + + + A + ++ + E Sbjct: 248 VYSMELFSKINNTFRNFDKQLSKCYLKNKIDSFVKAFIFNHKKKF---------IDKFLE 298 Query: 387 NLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 N+ SE Y L+ K +I ++KK + + + + Sbjct: 299 NILLSEIPY-LNGDFSYKIV-----------------FLIILIKKSLILLHNNTPLISGF 340 Query: 447 HLGNRRIRSVGEMAENQFRVGLVR-VERAVKERLSLG---------DLDTLMPQDMINAK 496 L N R +G++ + F + + E +K L L ++ ++ I Sbjct: 341 SLSNTRYLRIGDLLKITFSSCMNKLFEFLIKSILKLSTNITKNSKINIIRILKSHNITQA 400 Query: 497 PISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 + + F + L SQ + + LS + +I++ + + R Sbjct: 401 IEYSLLSGIFTNKNLVVSIVCNSQVHTKFSYLSTTSMLNKINSY----VNKSIKSLYPRS 456 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN--EYGFLETPYRKVTDGVVTD---EIH 604 + ++ RVC IE+PEG + GLI +LS Y+Q + T Y V + Sbjct: 457 LFLNYWNRVCFIESPEGESCGLIKNLSYYSQISFTIDENKITSYLLTLGTRVFRNDLNLL 516 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 LS + + + + + + R F V+ + S Sbjct: 517 MLSRKQFSVFHKTKIIGYHENIFWLIYTIKQLRRSFFLDKFLNYYVNE---KICVINSDE 573 Query: 665 ASLIPFLE--------------HDDANRALMGANMQRQAVPTLRADKPLVGTGM--ERAV 708 ++ L + + M R + L D+ + + E+ + Sbjct: 574 GRILRPLFTLKIYKSNTIKNNYFGKTDNKTLRDLMLRGYIEFLDYDEEICTNPVPFEKNI 633 Query: 709 AVDSGVT------AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 + G+V + + ++ M + I Y L ++ ++ Sbjct: 634 NKYTSHIEIGNFTIFGIIAGIVPFTNHNQAPRNTYHCAM--EKQNIGFYGLNQFVNNSLT 691 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALG-QNMRVAFMPWNGYNFEDSILVSER 821 I P + V D ++ ++ G QN+ ++ M ++ +N EDS++ ++ Sbjct: 692 INILWYPQ--------KSLVYNDISKSNKTDIIGGAQNIILSVMNFDSFNIEDSLIANKD 743 Query: 822 VVQEDRFT------TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 F + + ++ TK+ E + + KL E+ + + Sbjct: 744 SSFLGLFRGSSLIIFLIYRINKPITEPTKITFFEFLTRKKIIKNDSEEKLGENNFLSFSS 803 Query: 876 EVTGGDILVGKV-TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 + +IL + + L + K SS GV G + + F Sbjct: 804 KEKRFNILRSHLANSICMITKKSDIDLKYTLNHFPEIGDKYSSRHGQKGVVGLMGNKIHF 863 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 + + + + E Sbjct: 864 PFNLNGQIPDFIMNPAGFTSRMTMGQVLE 892 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 91/846 (10%), Positives = 243/846 (28%), Gaps = 125/846 (14%) Query: 28 LSIQLDSFQKFIEQDPE--------------GQYGLEAAFRSVFPIQSYSGNSELQYVSY 73 + Q+ S+ FI + ++GL + + + L+ Sbjct: 16 IYQQIISYNNFITNTIKNIVKKKKIKIIFKDNEFGLNIRYNILKRGTNSHLTLPLKIEGK 75 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 F ++ +YS L + + + + + D K + +G IP++ + Sbjct: 76 NFK--KFTPFISRLCKYSYSGILL--IAINVETIKLNQFKKNDSKCYFINLGNIPILLRS 131 Query: 134 GTFVINGTERVIVSQLHRSP---GVFFDSDKGKTHSSGKVLYNARIIPYR----GSWLDF 186 ++N + P G +F + + +Y + + +R S + Sbjct: 132 LKCILNYAQVKKSICYGECPLDLGGYFILKGKERSILIQEIYKSSLFNFRLYKKNSVITK 191 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 F + + L + ++ L + E++ + Sbjct: 192 LFMKYYKKIFKYKIIINKSKFTLSSNLFNSEIDLIILLIALGLKEVKLYHFLNSI----- 246 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 G + + ++++ +++ VK + ++ + Sbjct: 247 -GVYSMELFSKINNTFRNFDKQLSKCYLKNKIDSFVKAFIFNHKKKFIDKFLENILLSEI 305 Query: 307 GELICAANMELSLDLL----AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 L + ++ ++ + + + + + F+ I + L++ ++ Sbjct: 306 PYLNGDFSYKIVFLIILIKKSLILLHNNTPLISGFSLSNTRYLRIGDLLKITFSSCMNKL 365 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRY---DLSAVGRMKFNRSLLREEIEGSGI 419 + + + + ++ + S + + S + + N++L+ + S + Sbjct: 366 FEFLIKSILKLSTNITKNSKINIIRILKSHNITQAIEYSLLSGIFTNKNLVVSIVCNSQV 425 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA----- 474 +K + L I+ N+ I+S+ + F RV Sbjct: 426 HTKFSYLSTTSMLNK----------INSYVNKSIKSLYP--RSLFLNYWNRVCFIESPEG 473 Query: 475 -----VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 +K + + ++ I + ++ + F L + + + HK + Sbjct: 474 ESCGLIKNLSYYSQISFTIDENKITSYLLTLGTRVFRNDLNLL-MLSRKQF--SVFHKTK 530 Query: 530 ISALGPGGLTRERAGFEVRD-------VHPTHYGRVCPIETPEGPNIGLINSLSVY--AQ 580 I ++R ++ ++C I + EG + + +L +Y Sbjct: 531 IIGYHENIFWLIYTIKQLRRSFFLDKFLNYYVNEKICVINSDEGRILRPLFTLKIYKSNT 590 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 F +T + + D ++ I +L EE C + Sbjct: 591 IKNNYFGKTDNKTLRDLMLRGYIEFLDYDEE-----------------------ICTNPV 627 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV---------- 690 ++++ + + A ++PF H+ A R M++Q + Sbjct: 628 PFEKNINKYTSHIEIGNFTIFGIIAGIVPFTNHNQAPRNTYHCAMEKQNIGFYGLNQFVN 687 Query: 691 ------PTLRADKPLVGTGMERAVAVDSG---VTAVAKRGGVVQYVDASRIVIKVNEDEM 741 K LV + ++ D + + ++ + + Sbjct: 688 NSLTINILWYPQKSLVYNDISKSNKTDIIGGAQNIILSVMNFDSFNIEDSLIANKDSSFL 747 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG-ELALGQNM 800 I L P + + L E LG+N Sbjct: 748 GLFRGSSLIIFLI---------YRINKPITEP-TKITFFEFLTRKKIIKNDSEEKLGENN 797 Query: 801 RVAFMP 806 ++F Sbjct: 798 FLSFSS 803 >UniRef50_P42487 DNA-directed RNA polymerase subunit 2 n=7 Tax=African swine fever virus RepID=RPB2_ASFB7 Length = 1242 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 89/451 (19%), Positives = 156/451 (34%), Gaps = 86/451 (19%) Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 + +PNG++ V ++ E + + A EE LE+ + Sbjct: 839 HNYVIPNGLNTIVA-YMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIE--- 894 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 + ++ ++ + + + + + +++ E ++ + R Sbjct: 895 SFGKPDPLITKNLKPGANYEKLVDGFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDRS 954 Query: 1036 ITQGDDLAPGVLKIVK-----------VYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 + G D V +++ + L +R + GDKM+ R GNKG+ + P D Sbjct: 955 VMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSD 1014 Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MP+ E+G D+++NP P + G I + Sbjct: 1015 MPFTEDGLQPDLIVNPHSHP---------------SRMTNGQMIETTVG----------- 1048 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 N +G+ F + E L L Sbjct: 1049 ----------------------------LANALQGVVTDGTAFLPINVQLLSERLAQEGL 1080 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV-DDKMHARSTGSYSLVTQQPLGGKA 1263 +G ++++G+TGE F+ + +G Y +L V DD+ S G +T QPL GK Sbjct: 1081 RFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKR 1140 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN-------------IVD 1310 GG R GEME W L A GA T+ E SD ++ Sbjct: 1141 SHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYNASHPIYKCMN 1200 Query: 1311 GNHQMEPGMPESFN---VLLKEIRSLGINIE 1338 + Q + GM +S V E+R+ +NI Sbjct: 1201 CDVQADIGMVDSRRSSIVFQHEMRAANVNIT 1231 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 130/1014 (12%), Positives = 285/1014 (28%), Gaps = 185/1014 (18%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAF---------RSVFPIQSYSGNSEL 68 ++ L+ + SF ++ + F R I + ++ Sbjct: 30 ISAAVNSTGLIGYNIKSFDDLMDNGIPQIV--KQMFNVDITYKDQRDHTEIDKLRESVQI 87 Query: 69 QY--VSYRLGEPVF-----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 Q+ + P + ++ G++YS P+ + +++ + Sbjct: 88 QFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAEVILTAHYSNGR--- 144 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 QEV IP + ++ G+ R L K Sbjct: 145 ----QEVKRASIPPFQVSTFPIMRGSNRCHTHHL--------SKTAKKEIGEDPNEPGGY 192 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 I G W +L + + T I ++ EI Sbjct: 193 FIARGGEW----------------------VVDLLENIRFNTLHIHYHTMQQGNNEIIRG 230 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 + I G + + I ++ + I Sbjct: 231 EF-----------------ISQPGGAFENSSQIIIRYMTTGAITIEINSTKFSKLRIPWY 273 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 ++ + + +I E + L S IE L + P V Sbjct: 274 LIFRMFGMTGDDSII-----EQVVFDLESNSPVNTFMIEILEKSIHVLDPIFQ---PVQH 325 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 +R + + + + + +A EN + L+ + ++ + Sbjct: 326 EPNREKIIQFLSEKV--SKFVSNPSAYKSDENAVQYLNERQLTILDKILLPH---MGQTA 380 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR----- 470 + + + ++ K++ + D D +R+ G F+ Sbjct: 381 DTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNTSVIAP 440 Query: 471 VERAVKERLSLGDLDTLMPQDMI----------NAKPISAAVKEFFGSSQ---------- 510 + KE L + L +++I A ++ ++++ S Sbjct: 441 IINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPI 500 Query: 511 ----LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE-VRDVHPTHYGRVCPIETPE 565 +Q +++ N L+ I+ R ++ +++ + +R VH ++ G +C ++ + Sbjct: 501 VNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMMRRVHASYPGYICVAQSAD 560 Query: 566 -GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGN------YVIAQ 618 G +G+ L++ A G + + +++ ++ +S + ++ + Sbjct: 561 TGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARVFINGE 620 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 + R +G+ V + L L D N Sbjct: 621 WIGCCTNAFELAQRYRMFRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLIVDNNI 680 Query: 679 ALMGANM--------------QRQAVPTLRAD-----------------KPLVGTGMERA 707 ++ +P ++ + LV G+ Sbjct: 681 EKYNQACYKAAEARKKGDKDWEKHKIPFIQNTRFTSQMAKDILAGTLTLEDLVAQGICEF 740 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ---NTC 764 + + + +++ V + P ++ Y Q T Sbjct: 741 ITPEEAENCLVAFS-IIELRKHKHDVTRRFTHVDVPQAILGLAALVSPYANCTQPARVTY 799 Query: 765 INQMPCVSLGEPVERGDVLAD--------------GPSTDLGELALGQNMRVAFMPWNGY 810 + G D + G N VA+M + GY Sbjct: 800 ETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYVIPNGLNTIVAYMIYGGY 859 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE----ITADIPNVGEAALSKLD 866 N EDS++VS+ + F +E + IT ++ A KL Sbjct: 860 NQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIESFGKPDPLITKNL--KPGANYEKL- 916 Query: 867 ESGIVYIGAEVTGGDILVGKVTPK-GETQLTPEEKLLRAIFGEKASDVKDSSLR 919 G V +G V GDI++GKV GE + ++G V D+ +R Sbjct: 917 VDGFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMR 970 >UniRef50_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8PJ53_COPC7 Length = 742 Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 114/785 (14%), Positives = 240/785 (30%), Gaps = 171/785 (21%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQ------DPEGQYGLEAAFRSVFPIQSYSGNSEL 68 + D L+ QLDSF +F++ D L+ A + + E+ Sbjct: 35 WTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGQAGDMTRRYEI 94 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 ++ L P + G+V + QE + + Sbjct: 95 KFGQIYLSRPTVTEAD---------------------------GSVVPVFPQEARLRNL- 126 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 T + I +RV+V + + +P +W + E Sbjct: 127 --TYSAPLYIEMRKRVLVGREDPA------------------------VPGDITW-EAEH 159 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 + D +I + I+LR ++ IL ++ ++++ + Sbjct: 160 EDTDGDAAKIWIGK---VPIMLR----SSFCILHELRDQDLYDLNECPYDSGGY------ 206 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 F I + KV + + R T K P+ ++A A + ++ + Sbjct: 207 ----FIINGSEKVLIAQERMATNHVYVF-----AKAQPSPINFLAEIRSAVERGGKTISQ 257 Query: 309 LICAANMELSLDLLAKLSQSGHKRIET-------LFTNDLDHGPYISETLRVDPTNDRLS 361 L + ++ I+ + I E + D + ++ Sbjct: 258 FQVKMFHRNQERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQM- 316 Query: 362 ALVEIYRMMRPGE-PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI------ 414 L + + G RE A N L R+++ + +L++E+ Sbjct: 317 -LEMLKPCIDDGFVIQDREVALDFIGNR---GTTTGLPRDRRIRYAQEILQKEMLPHISM 372 Query: 415 -EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG---------------- 457 EGS ++ +L+ + E+DD DH G +R+ G Sbjct: 373 AEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGLPSRQPVPYALPQAHQ 432 Query: 458 ---------EMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 E+ + + + + V+ + + I+ +K + Sbjct: 433 RCLSLLAEGELIQLHVGRIRIDLLQCVETH------KEFNLSLAVKHQTITNGLKYSLAT 486 Query: 509 SQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 SQ +++ S ++H RR + L RE + R +H TH+ Sbjct: 487 GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT----PLGREGKIAKPRQLHNTHW 542 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 G VCP ETPEG GL+ +L++ A + G P + + + + +A Sbjct: 543 GMVCPAETPEGQACGLVKNLALMACISV-GSYSAPVIEFLEEWGLESLEE-NAHSTTPCT 600 Query: 616 IAQAN----SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 N + + V+ + R K + V + ++ + + L Sbjct: 601 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDI-SPEVSVVRDIRERELRLYTDAGRVCRPL 659 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 + + ++ R ++ + + G+V+ +DA Sbjct: 660 FIVENQQLVLQKKHVRW---LANSEND----------DGEEWKWENLIKSGIVELLDAEE 706 Query: 732 IVIKV 736 + Sbjct: 707 EETVM 711 >UniRef50_B7RK98 DNA-directed RNA polymerase, beta subunit n=1 Tax=Roseobacter sp. GAI101 RepID=B7RK98_9RHOB Length = 309 Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 115/220 (52%), Positives = 156/220 (70%), Gaps = 4/220 (1%) Query: 105 YEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 + RE VKDIKEQ+V+MG++PLMT NGTFV+NGTERVIVSQ+HRSPGVFFD DKGKT Sbjct: 46 FTREVRRVAVKDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKT 105 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 HSSGK+L+ RIIPYRGSWLDFEFD KD +F RIDRRRKLP T +L AL E I+D + Sbjct: 106 HSSGKLLFACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAY 165 Query: 225 FEKVIFEIRDNK-LQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQL-EKD 280 ++ V + ++ + P+R+RG ++D+ A G+V EKG+++T R ++QL ++ Sbjct: 166 YDTVTYTLKAGEGWVAPFYPDRVRGTRPTYDLIDAATGEVLFEKGKKVTPRAVKQLVDEG 225 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 V + +P E+I GK A+D I+E TG + E++L+ Sbjct: 226 KVSELVLPFEHIVGKFAARDIINEETGAIYVEPGDEMTLE 265 >UniRef50_A7AXE5 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AXE5_BABBO Length = 971 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 118/655 (18%), Positives = 232/655 (35%), Gaps = 32/655 (4%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD---IEANG 259 K TI +NY I LFF+ V ++ + L+ +++ F+ I++ Sbjct: 5 KDYNTIYKTYINYILNNIYTLFFDVVKYQKKL--LKRNNYRVKVQNIKLYFNLLSIKSID 62 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY---IDESTGELICAANME 316 K+ ++ + +K I +D + LI N Sbjct: 63 KINYNSYYLLSYSTMYYSFNVPLKFIFNDQSKSININYNILNIPKVDATGEILINGFNRT 122 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 L L + + + + + L N L + + N + + + E Sbjct: 123 PVLHLKSIIKHTSTVQKKRLIKNYLINLTGFNYMHVSVSQNKYVYVKLNDLSKLDLSEVI 182 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-GSGILSKDDIIDVMKKLIDI 435 + F L E ++ +N +++ + S DII V+ K I+ Sbjct: 183 KFNSIHKNFIKLTIFEIIEAINDKFYNDYNDNVINSFFTAYNKNCSYADIISVINKFINA 242 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 + K + D N+ + S+ + N + L ++ L LD+ I Sbjct: 243 VHKKITFINSDSFINKNVNSICDNMFNLIKKSLSTYHFTDPKKHILHVLDSKTKFSNI-- 300 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV---RDVHP 552 +E F + + +Q N LS + +K +++ G + R V Sbjct: 301 ----PLFRENFLLNPSLHYTNQLNLLSCVQNKFKLNIFGYSTSSTSTTFAIPKYLRQVQY 356 Query: 553 THYGRVCPIETPEGPNIGLINSLSVYA--QTNEYGFLETPYRKVTDGVVTDEIHYLSAIE 610 + + + T +G G++++++ Q + + +K + + D+ Sbjct: 357 FYLNFINILYTVDGEKCGILSTITTNTIEQNKKLKTVIINKQKFLNNIYLDQFS----KN 412 Query: 611 EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD-QVDYMDVSTQQVVSVGASLIP 669 + I N+ L + +F + V GE + D ++ + ++ LIP Sbjct: 413 LNSITINNYNNLLKKSYNFKINHVEVIENGEFKIVKLDKHSSNSSLTFYNIFNITELLIP 472 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 FL ++D R+LMG+ M QAVP + ++ V T + + S ++ G++ Sbjct: 473 FLLNNDMCRSLMGSKMHTQAVPLIHSNPQYVYTKYNQITNLISNKCIISSTSGIIVLSTN 532 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 +I I + + Y L+ Y + N P V GE G +LA Sbjct: 533 YKITILDDNNRYVS-------YYLSPYNIHDYNYYTRYRPVVWEGEKSNIGTILAIPSDA 585 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 E LG N V + + GY ED+I++++ V D T++ K Sbjct: 586 ANCEFTLGFNNFVNYSFYYGYEHEDAIVLNKNVAYNDMLTSLEFDIDDIDLSFKK 640 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 95/538 (17%), Positives = 190/538 (35%), Gaps = 71/538 (13%) Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 + YN +++ ++ ++ + D N+ + Sbjct: 502 YVYTKYNQITNLISNKCIISSTSGIIVLSTNYKITILDDNNRYVSYYLSPYNIHDYNYYT 561 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 +V+ G + G IL E L F + Sbjct: 562 -RYRPVVWEGEKSNIGTIL-----AIPSDAANCEFTLGFNNFVNYSF------YYGYEHE 609 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 V++ V D + + ++ ++ K+ K + L + +F I ++ Sbjct: 610 DAIVLNKNVAYNDMLTSLEFDIDDIDLSFKKKKY-IETILIDNKKKIFKIIIRIISNLKK 668 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 + + K R + + L ++K + + + G +L Sbjct: 669 QKREALKRAVRRRKRRRKIKKIVIKSKKCLYSDQTDIKKLVKYECTQYSNFVRIGSNLNY 728 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 K++L I GDK+ GRHGNKG ISKI I + PY +I+ +P+G Sbjct: 729 ANF---KLFLVSINNINVGDKLCGRHGNKGTISKIIEIPESPYTSEDKLPNIITSPIGAA 785 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRMN+GQ +E ++G +I + + +++ + + K+ S Sbjct: 786 SRMNVGQFIEGYIGNTCDIDNVRIKSPINLHSSDMYSSLYVKSVSNKINNRYVKLKSSQN 845 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 + D +TG + + Sbjct: 846 AVS-------------------------------------------VFRDFKTGYKLKGF 862 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 +Y KL H K R + S + Q + G+++ Q+FGEMEVW+LEA+GA+ Sbjct: 863 THHVILYFFKLMHTSKSKFRYRCSSSKLV---QYVHGESKE--QKFGEMEVWSLEAHGAS 917 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 Y L+EM +K++ K+ + + + ++F L+ E++++ ++I+ ++ Sbjct: 918 YNLKEMSLLKTNIKFVTEKIMYDYSN-------LLSKTFTDLIAELKAVLVSIKFNNK 968 >UniRef50_UPI0001C41F1A DNA-directed RNA polymerase subunit B'''' RpoB2 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F1A Length = 520 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 72/360 (20%), Positives = 141/360 (39%), Gaps = 26/360 (7%) Query: 251 ASFDIEANGKVYVEKGRRITARHI----RQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 F + + + V + I ++E K I ++ + +Y Sbjct: 149 GYFIVNGSERAVVTMEEIAPNKIILERIDEIEDRHAKAIVTSIKSGFRARITLEYKKPRK 208 Query: 307 GELICAA------NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + + LL L S I + ++D + YI++ L+V + +L Sbjct: 209 SGVFLRISFPYVPGEIPLVILLRALGLSTDGEIISKISDDFNFQMYIADDLQVSEKDLKL 268 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EIEGS 417 + + + + ++AA N + L Sbjct: 269 DSDLLLSLSNEERDEYLQKAAIKYIGNRVAKGMTEEYRIKRAEDVIDRYLLPHMGIESDK 328 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 + ++ + L+ + G+ E D DH N+R+R G++ E+ FRV + R + Sbjct: 329 RYDKAIYLAEMTEMLLQVIEGQREPHDKDHYTNKRLRVSGDLTEDLFRVAFSSLTRDMSY 388 Query: 478 RLSLG--DLDTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKR 528 RL L + + + ++ +K + SQ +D+ + ++ ++H R Sbjct: 389 RLERSLSRGKELSIKQAVRSDVLTENIKHAIATGNWVGGRAGVSQLLDRVSYMATLSHLR 448 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+ + LTR + FE RD+HPT +G++CP ETPEGPN GL+ +L++ + +E E Sbjct: 449 RVVS----PLTRSQPHFEARDLHPTQFGKICPNETPEGPNCGLVKNLALMCKISEGFDPE 504 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 59/370 (15%), Positives = 126/370 (34%), Gaps = 53/370 (14%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 + +G D ++ + S+ F+E + + I++ GN L+ Sbjct: 4 ETWGLVDSFFDKYDIVDHHIKSYNDFVENRIQNIIDITEPIT----IENEKGNYTLRTGK 59 Query: 73 YRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 + +P E ++R + YSA + +++ L + ++ + + V Sbjct: 60 LTIEKPFTKEADGSKSMIYPTEARLRNLNYSAHMYLEMAL------HDNNSDEEEELENV 113 Query: 123 YMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFD 158 Y+GE+PLM G F++NG+ER +V+ +P Sbjct: 114 YIGELPLMLKSSICHLHGLSDEELVKRGEDPKDPGGYFIVNGSERAVVTMEEIAPNKIIL 173 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP--KDNLFVRIDRRR---KLPATIILRAL 213 + I + + E+ K +F+RI ++P I+LRAL Sbjct: 174 ERIDEIEDRHAKAIVTSIKSGFRARITLEYKKPRKSGVFLRISFPYVPGEIPLVILLRAL 233 Query: 214 NYTTE-QILDLFFEKVIF--EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRIT 270 +T+ +I+ + F I D+ E + S E + + + Sbjct: 234 GLSTDGEIISKISDDFNFQMYIADDLQVSEKDLKLDSDLLLSLSNEERDEYLQKAAIKYI 293 Query: 271 ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGH 330 + + ++ I+ + I ++ I+ E++ LL + Sbjct: 294 GNRVAKGMTEEY-RIKRAEDVIDRYLLPHMGIESDKRYDKAIYLAEMTEMLLQVIEGQRE 352 Query: 331 KRIETLFTND 340 + +TN Sbjct: 353 PHDKDHYTNK 362 >UniRef50_Q06SF4 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_STIHE Length = 1080 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 124/201 (61%), Gaps = 3/201 (1%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y+L Y RSNQ+T + P V GE V+ GD+L+D S+ GE ++GQN+ +A++PW GY Sbjct: 14 YSLQTYQRSNQDTSMLHRPVVKEGEWVQAGDLLSDCASSIGGEFSIGQNILIAYLPWEGY 73 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE-AALSKLDESG 869 N+ED+IL+SER+V +D +T+IHI+ + G E+IT DI + + L+ LD++G Sbjct: 74 NYEDAILISERLVYDDLYTSIHIERYDISTEKNPYGIEKITKDIVLLKDTTELNHLDKNG 133 Query: 870 IVYIGAEVTGGDILVGKVTP-KGETQLTPEEKLLRAIFGEK-ASDVKDSSLRVPNGVSGT 927 I +GA + GDILVGK+TP + + ++ +L I G+K ++DSSLRVP G+ Sbjct: 134 IAQLGAWLKEGDILVGKITPTESKKEVARYVQLYNDILGKKINYAIRDSSLRVPRGLEAK 193 Query: 928 VIDVQVFTRDGVEKDKRALEI 948 VI V+ F E +I Sbjct: 194 VIRVKTFPERKNETKNWENKI 214 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 112/224 (50%), Gaps = 39/224 (17%) Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 +K + L + V +YLA KR++Q GDKMAGRHGNKG+IS+I P +DMPY +GT Sbjct: 406 EKKRDASNFLKSSCISSVHIYLAEKRKVQVGDKMAGRHGNKGIISQILPRQDMPYLPDGT 465 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLG 1152 P+D+ LNPLGVPSRMN+GQI E LG+A K +G++ + G Sbjct: 466 PIDMALNPLGVPSRMNVGQIYECLLGLAGKHLGEQYRIQPFDEA--------------FG 511 Query: 1153 ADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRL 1212 + + S + L G+++L Sbjct: 512 PEASRSFVFSKLYSAKTKTGQS-------------------------WLFQPTNPGKLKL 546 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 +DGRTG F++ +T GY YM+KL HLVD+K+H + L T+ Sbjct: 547 FDGRTGNCFDQAITTGYSYMIKLVHLVDEKIHCLTVDHEVLTTK 590 Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 86/144 (59%), Gaps = 11/144 (7%) Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTV----GYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 + G+ + ++ V ++ ++ N L ++RS+G YSL+TQ Sbjct: 927 NHGYHSKGKEEV------LPYQGAVYCLSVPNEIFYVRRNGLSVWTGNSRSSGPYSLITQ 980 Query: 1257 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME 1316 QPL G+++ GGQR GEMEVWA+EAYGAA+TL E+LT+KSDDV GR ++ + V + Sbjct: 981 QPLKGRSKHGGQRLGEMEVWAIEAYGAAFTLLELLTIKSDDVTGRLTIW-DYVLYKKPLY 1039 Query: 1317 PGMPESFNVLLKEIRSLGINIELE 1340 G P SF VL+ E+++L ++I + Sbjct: 1040 IGTPASFKVLICELQALCLDIGIY 1063 >UniRef50_Q8TXI6 DNA-directed RNA polymerase second-largest subunit, the N-terminal part n=1 Tax=Methanopyrus kandleri RepID=Q8TXI6_METKA Length = 525 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 82/468 (17%), Positives = 176/468 (37%), Gaps = 51/468 (10%) Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 YR + E ++ RR+ P LR + Y+ ++ + E+ + + Sbjct: 63 SYRIEFERIEVGEPSSIEPDGARRKIYPMEARLRNMLYSAPLYAEIVMYEDGEEVERDNV 122 Query: 238 QMELVPERLR-----------------GETA-----SFDIEANGKVYVE-KGRRITARHI 274 + +P +R GE F I + +V + + R Sbjct: 123 YVGELPVMVRSKVCNTYGLSEEELIEVGEDPKDPGGYFIINGSERVLMSLEDIAPNRRVN 182 Query: 275 RQLEKDDVKLIEVPVEYIAGKVV--AKDYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 ++ + V Y G+ D ID +I + ++ L G Sbjct: 183 EKIRERGVLDEVRSRVYSRGERYRGPVDVIDRKGRLVIDMPAVYRKFPVVILLRALGLTE 242 Query: 333 IETLFTNDLDHGPYISET---LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF 389 E + + ++E L + + AL I R+ RP E+ E + Sbjct: 243 EEIMEGVGPEFATIMAEQMRVLVKEEIGSQEDALEYIGRLSRP-----DESREERIKRGK 297 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVD---DID 446 +Y L + + E+++ D+++ +++++++++ + +V D D Sbjct: 298 EVLAKYFLPHIAEVD--DLDDDEKLKEVFRKKADEVLKMVREVLELKYRRVKVKSVRDRD 355 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKE 504 H N+RI+ G++ + ++ R ++ + + ++ ++ ++ Sbjct: 356 HYANKRIKLAGDLLYEAYEYAFQQLAREMRYQFERAYSRGREPTIRYIVRPDKVTDHIRS 415 Query: 505 FFGSS-----------QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 + +SQ +++ +S ++H RRI A G+ + E R +HPT Sbjct: 416 CMSTGTWRTGHYRPRTGVSQILERYTWMSTMSHLRRIRAATELGVGKWSIPKEARYLHPT 475 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 H GR+CP ETPEG N G I +L++YA+ E ++ + + + Sbjct: 476 HMGRLCPNETPEGANCGAIKNLALYAEVVHKDADEDEVIEILEEIGLE 523 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 68/395 (17%), Positives = 133/395 (33%), Gaps = 60/395 (15%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG--NSEL 68 +R++ V P L++ S+ I++ GL+ + PI+ + + Sbjct: 14 LRRNEELLGDVKTHP-LIAHHFLSYHWLIDE------GLQQLIEQMEPIEPEVEGASYRI 66 Query: 69 QYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 ++ +GEP E ++R + YSAPL ++ + ++++ Sbjct: 67 EFERIEVGEPSSIEPDGARRKIYPMEARLRNMLYSAPLYAEIVM--------YEDGEEVE 118 Query: 119 EQEVYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPG 154 VY+GE+P+M G F+ING+ERV++S +P Sbjct: 119 RDNVYVGELPVMVRSKVCNTYGLSEEELIEVGEDPKDPGGYFIINGSERVLMSLEDIAPN 178 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRAL 213 + + +V R D K L + + RK P I+LRAL Sbjct: 179 RRVNEKIRERGVLDEVRSRVYSRGERYRGPVDVIDRKGRLVIDMPAVYRKFPVVILLRAL 238 Query: 214 NYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH 273 T E+I++ + + + LV E + + + + E R Sbjct: 239 GLTEEEIMEGVGPEFATIMAEQMRV--LVKEEIGSQEDALEYIGRLSRPDESREERIKRG 296 Query: 274 IRQLEKDDVKLI------EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 L K + I + + D + + E++ + + + Sbjct: 297 KEVLAKYFLPHIAEVDDLDDDEKLKEVFRKKADEVLKMVREVLELKYRRVKVKSVRDRDH 356 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 +KRI+ + Y + L + A Sbjct: 357 YANKRIKLAGDLLYEAYEYAFQQLAREMRYQFERA 391 >UniRef50_O27123 DNA-directed RNA polymerase subunit B'' n=19 Tax=Euryarchaeota RepID=RPOB2_METTH Length = 519 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 81/450 (18%), Positives = 166/450 (36%), Gaps = 54/450 (12%) Query: 199 DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD-NKLQMELVPERLRGET------- 250 + + P LR L Y+ L++ K + K+ + +P L+ E Sbjct: 77 SKSKIYPTEARLRNLTYSAHMSLEMRLLKEGGPETEFEKVYIGELPVMLKSEICHLHGLS 136 Query: 251 ---------------ASFDIEANGKVYVEKGRRITARHI----RQLEKDDVKLIEVPVEY 291 F + + + V + I + +++ + I + Sbjct: 137 RKELMEKGEDPADPGGYFIVNGSERSIVTMEEIAPNKIILERIGEEDENRARAIVTSIRS 196 Query: 292 IAGKVVAKDYIDESTGELICAA------NMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 ++ +Y + + LL L + + I T ++D ++ Sbjct: 197 GFRARISLEYRKPRKTGVFLRISFPYVPGEIPLVILLRALGLATDQEIITSISDDFNYQM 256 Query: 346 YISETLRV--DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 ++ ++V D N + E+ R +A N D Sbjct: 257 IAADDIQVSLDRLNLNKKEMKELDEEDR--REYLIRSAIKYIGNRVAKGMTEDYRIKRAE 314 Query: 404 KFNRSLLRE---EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 L + + ++ + L+ + +G+ D DH N+R+R G++ Sbjct: 315 DVIDRYLLPHIGTEPEKRLEKATYLAEMTEMLLQVISGERRPHDKDHYTNKRLRVSGDLM 374 Query: 461 ENQFRVGLVRVERAVKERLSL-------GDLDTLMPQDMINAKPISAAVKEFF--GSSQL 511 E+ RV + R + +L + + D++ A + G + + Sbjct: 375 EDLLRVAFTSLSRDMSYQLERSLARGKEPSVKQAVRSDVLTENLKHAIATGNWVGGRAGV 434 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 SQ +D+ + + ++H RR+ + L+R + FE RD+HPT +G++CP ETPEGPN GL Sbjct: 435 SQLLDRTSYMGTLSHMRRVVS----PLSRSQPHFEARDLHPTQFGKICPNETPEGPNCGL 490 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 + +L++ A+ +E G + +V V + Sbjct: 491 VKNLALLAKISE-GSDASEVEEVIKMGVVN 519 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 73/421 (17%), Positives = 155/421 (36%), Gaps = 61/421 (14%) Query: 7 EKKRIRKD-FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 +K ++K +G D L+ + S+ F+ ++ + PI+ G Sbjct: 3 WRKSMKKSAWGLVDAFFDKYDLVDHHIHSYNDFV------SNRIQEIIDTSEPIELEQGK 56 Query: 66 SELQYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 ++ + +P E ++R +TYSA + +++RL + Sbjct: 57 YRVETGKVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEMRL-------LKEGGP 109 Query: 116 DIKEQEVYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHR 151 + + ++VY+GE+P+M G F++NG+ER IV+ Sbjct: 110 ETEFEKVYIGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVNGSERSIVTMEEI 169 Query: 152 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP--KDNLFVRIDRRR---KLPA 206 +P G+ + I + + E+ K +F+RI ++P Sbjct: 170 APNKIILERIGEEDENRARAIVTSIRSGFRARISLEYRKPRKTGVFLRISFPYVPGEIPL 229 Query: 207 TIILRALNY-TTEQILDLFFEKVIFE-IRDNKLQMELVPERLRGETASF--DIEANGKVY 262 I+LRAL T ++I+ + ++ I + +Q+ L L + + + + Sbjct: 230 VILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDRLNLNKKEMKELDEEDRREYLI 289 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 + I R + + +D I+ + I ++ + E++ LL Sbjct: 290 RSAIKYIGNRVAKGMTEDY--RIKRAEDVIDRYLLPHIGTEPEKRLEKATYLAEMTEMLL 347 Query: 323 AKLSQSGHKRIETLFTNDLDH--GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 +S + +TN G + + LRV T+ ++ R + G+ P+ + Sbjct: 348 QVISGERRPHDKDHYTNKRLRVSGDLMEDLLRVAFTSLSRDMSYQLERSLARGKEPSVKQ 407 Query: 381 A 381 A Sbjct: 408 A 408 >UniRef50_Q5W438 RNA polymerase B subunit (Fragment) n=4 Tax=Cyanobacteria RepID=Q5W438_OSCAG Length = 220 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 99/218 (45%), Positives = 127/218 (58%), Gaps = 27/218 (12%) Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 +A + + D EG + D+V R + E + + QVDY VS Q+VSV SLIPFLEHDD Sbjct: 3 VAPGDISTDAEGTILGDIVPVRYRQEFTTTTPMQVDYAAVSPVQIVSVATSLIPFLEHDD 62 Query: 676 ANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV-- 733 ANRALMG+NMQRQAVP LR ++PLVGTG+E A DSG+ V++ G + Y+D SRI+ Sbjct: 63 ANRALMGSNMQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRMDGEISYIDGSRIIVK 122 Query: 734 ----------------IKVNEDEMYPGEA---------GIDIYNLTKYTRSNQNTCINQM 768 I+ +D + G Y L KY RSNQ+TC+NQ Sbjct: 123 SLTVDADSNSSEESFLIREYDDLDLKTKQPSVWKQKYAGYIEYELQKYQRSNQDTCLNQR 182 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 P V G+ V G VLADG ST+ ELALG N+ V +MP Sbjct: 183 PLVYEGDQVVAGQVLADGSSTEGAELALGHNILVTYMP 220 >UniRef50_C0GNU6 RNA polymerase Rpb2 domain 6 n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNU6_9DELT Length = 1518 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 91/437 (20%), Positives = 154/437 (35%), Gaps = 94/437 (21%) Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE 949 + + + LL A + +D G VI + K Sbjct: 356 EHDLDMDIGRNLLVAYLPWYGFNYED----------GIVISRSAA-EKFLSVKKHKFGPY 404 Query: 950 EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN 1009 + + + L+ + + +G V A +++Q Sbjct: 405 FCPGNYRPANPDSKWRKLDRDGLAPQGQEVKSGDVLAAFYPVR-----WNHDSRSKKRQI 459 Query: 1010 QLEQLAEQYDEL--KHEFEKKLEAKRRKITQGD-DLAPGVLKI-VKVYLAVKRRIQPGDK 1065 + LAE H K + + + D L + ++ V + + R ++PGDK Sbjct: 460 VVNTLAEPLLVRVPDHVQGKLVRFEVVCLETSDLPLPRHITRMAVHMEIEESRPLEPGDK 519 Query: 1066 MAGRHGNKGVISKINPIEDMPYDEN--------------------GTPVDIVLNPLGVPS 1105 + GRHGNKGVIS+I P +MPY + T V+++LNPLGV Sbjct: 520 IMGRHGNKGVISRILPDREMPYFLDSMHGITDLRSSSHFHGEEQAHTHVEVILNPLGVIG 579 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RMN GQ+LE H G+A + I +++ Sbjct: 580 RMNTGQLLECHTGLAMRCIPERMEFYQN-------------------------------- 607 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIK-ELLKLGDLPTSGQIRLY---DGRTGEQF 1221 + F ++ +LL + +G+ RL+ + Q Sbjct: 608 -----------------SGMPFSSVDIESLRQDLLSTKIVDETGKARLFWRDEAGNHVQT 650 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHA-RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 +G Y++KL+H+ DK H ++T QP+ G+++ GG R GEME W + Sbjct: 651 GHASMIGVQYLMKLDHMARDKFHVCGKKPPRCMITNQPVKGRSRGGGLRLGEMENWCIIE 710 Query: 1281 YGAAYTLQEMLTVKSDD 1297 A + E+L D Sbjct: 711 RQAWDVIDELLQKSEPD 727 Score = 96.8 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 117/337 (34%), Gaps = 72/337 (21%) Query: 470 RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS--SQLSQF--MDQNNPLSEIT 525 R+ +K+ L + + + + F+ + ++ F D N L+E Sbjct: 155 RLRYFLKKNLEKWKSRAVTNSYAASVLLAGSLDEAFYSTFYRRVDHFPLADTTNKLAETA 214 Query: 526 HKRRISALGPGGLTRERAGFEV----RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 R++SA + G + R++ P H G +CP+ETPE +IGL+ L+ A+ Sbjct: 215 QGRQVSAKSLRCHRKTMIGSKPEDNVRNLLPEHTGMICPVETPESESIGLVMHLARKARP 274 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 + +A E N EEG Sbjct: 275 ELWSQD-------------------AAFNE--------NDQRSEEGILKTP--------- 298 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 + A ++P+++H D RA+MGA +QA+ + + PL+ Sbjct: 299 --------------DPDNFLGYSACMVPYIQHTDPTRAMMGAKNMKQALSLTQGEAPLIR 344 Query: 702 TGMERAV--------AVDSGVTAVAKRGGV--VQYVDASRIVIKVNEDEMYPGEAGIDIY 751 TG E V +D G + Y D I E + + Y Sbjct: 345 TGHEEEVFGRGEHDLDMDIGRNLLVAYLPWYGFNYEDGIVISRSAAEKFLSVKKHKFGPY 404 Query: 752 NLT-KYTRSNQNT---CINQMPCVSLGEPVERGDVLA 784 Y +N ++ +++ G+ V+ GDVLA Sbjct: 405 FCPGNYRPANPDSKWRKLDRDGLAPQGQEVKSGDVLA 441 Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 90/245 (36%), Gaps = 22/245 (8%) Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 ++ +G+N+ VA++PW G+N+ED I++S ++ F ++ + K GP Sbjct: 360 DMDIGRNLLVAYLPWYGFNYEDGIVISRSAAEK--FLSV---------KKHKFGPYFCPG 408 Query: 853 DI-PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 + P ++ KLD G+ G EV GD+L + +++ + + Sbjct: 409 NYRPANPDSKWRKLDRDGLAPQGQEVKSGDVLAAFYPVRWNHDSRSKKRQIVVNTLAEPL 468 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK---RALEIEEMQLKQAKKDLSEELQILE 968 V+ VP+ V G ++ +V + + M++++++ + + Sbjct: 469 LVR-----VPDHVQGKLVRFEVVCLETSDLPLPRHITRMAVHMEIEESRPLEPGDKIMGR 523 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL--GLTDEEKQNQLEQLAEQYDELKHEFE 1026 G I +L + +E+ +E + + Sbjct: 524 HGNKGVISRILPDREMPYFLDSMHGITDLRSSSHFHGEEQAHTHVEVILNPLGVIGRMNT 583 Query: 1027 KKLEA 1031 +L Sbjct: 584 GQLLE 588 >UniRef50_A6BAY3 DNA-directed RNA polymerase beta chain (Fragment) n=2 Tax=Gammaproteobacteria RepID=A6BAY3_VIBPA Length = 285 Score = 184 bits (466), Expect = 3e-44, Method: Composition-based stats. Identities = 170/232 (73%), Positives = 200/232 (86%) Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 L+VRIDRRRKLPA+IILRAL +TE+ILD+FFEKV FE++D L MELVP+RLRGETASF Sbjct: 1 LYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKDQTLLMELVPDRLRGETASF 60 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 DIE+NGKVYVE+GRR+TARHIRQLEKD V IEVPVEYI GKV +KDYI+E+TGE+I A Sbjct: 61 DIESNGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEYIVGKVASKDYINEATGEIIVNA 120 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 N E+SL+ LA LSQ+GHK +E LFTNDLDHGP++SETLR+D T DR+SALVEIYRMMRPG Sbjct: 121 NQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETLRIDSTVDRISALVEIYRMMRPG 180 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 EPPT+EAAE+LFE+LFFSE+RYDLS VGRMKFN S+ RE+ + G I Sbjct: 181 EPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGREDAQEQGTEISLMI 232 >UniRef50_C7DHC6 RNA polymerase beta subunit n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC6_9EURY Length = 486 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 75/465 (16%), Positives = 159/465 (34%), Gaps = 42/465 (9%) Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+ G R++ +Q P V + K + + + +I S Sbjct: 28 FISVGINRIVENQSIIEPEVSDFAIKLERIRLEQPV----VIESDSSTRMIMPHEAQVRN 83 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET----- 250 + T ++ + E + + + P++L E Sbjct: 84 FTYSAPMYISYTPLISGIAKADSSGDAYVGEMPVMVRSNLCYTKNMSPQQLIEEGEDPDD 143 Query: 251 --ASFDIEANGKVYVEKGRRITARHIRQLEKDDV--KLIEVPVEYIAGKVVAKDYIDEST 306 F I+ +V V + + EK++ K+ + + A + +D T Sbjct: 144 PGGYFIIKGTERVLVGIEDLAPNKMMTTKEKNETVTKVFSTTLNFRAKCTITRDEYGIFT 203 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 + + +L L + ++ + ++ + ++ L A+ E+ Sbjct: 204 IMFPTLSKELNLVMVLRALGMQSKEMLDLITNREVKNDFLLNIELSKAKDLSSAEAMSEL 263 Query: 367 YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 ++ P + T + + + D Y L +G S ++ Sbjct: 264 GKITAPNQAQTYQEKRAEMQ-----LDTYILPHLG-----------TTPQSRADKALYLV 307 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DL 484 + ++ + + DD DH N+R++ G++ E F + +K + Sbjct: 308 RMAERTSMVAYNYVKSDDKDHYANKRVKLAGDLMEELFNTAFKAFVKDIKYHVERTTARG 367 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPGG 537 L + IN ++ + + SQ +D+ N S + H RR+ + Sbjct: 368 RKLAVKTNINPDTLTEKILYSMSTGSWPAGQTGVSQVLDRFNFASSVAHIRRVKS----P 423 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 L + F+ RDVH TH G++C ETPEG +GL L++ ++ Sbjct: 424 LAKRHPHFKARDVHGTHLGKICISETPEGIEVGLTRYLALMSKVT 468 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 69/435 (15%), Positives = 138/435 (31%), Gaps = 59/435 (13%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 ++ + Q+DS+ +FI G+ + I+ + ++ RL + Sbjct: 8 IQAYIESTSIAQQQIDSYNRFI------SVGINRIVENQSIIEPEVSDFAIKLERIRLEQ 61 Query: 78 P----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 P + E Q+R TYSAP+ + G K + Y+GE+ Sbjct: 62 PVVIESDSSTRMIMPHEAQVRNFTYSAPMYI------SYTPLISGIAKADSSGDAYVGEM 115 Query: 128 PLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGK 163 P+M G F+I GTERV+V +P K K Sbjct: 116 PVMVRSNLCYTKNMSPQQLIEEGEDPDDPGGYFIIKGTERVLVGIEDLAPNKMMT-TKEK 174 Query: 164 THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDL 223 + KV + + E+ +F + ++L ++LRAL ++++LDL Sbjct: 175 NETVTKVFSTTLNFRAKCTITRDEYGIFTIMFPTL--SKELNLVMVLRALGMQSKEMLDL 232 Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETAS----------FDIEANGKVYVEKGRRITARH 273 + + +++ + E S + ++ I Sbjct: 233 ITNREVKNDFLLNIELSKAKDLSSAEAMSELGKITAPNQAQTYQEKRAEMQLDTYILPHL 292 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 + K + + +VA +Y+ + ++L+ DL+ +L + K Sbjct: 293 GTTPQSRADKALYLVRMAERTSMVAYNYVKSDDKDHYANKRVKLAGDLMEELFNTAFKAF 352 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED 393 ++ L V + + +I M G P + S + F Sbjct: 353 VKDIKYHVERTTARGRKLAVKTNINPDTLTEKILYSMSTGSWPAGQTGVSQVLDRFNFAS 412 Query: 394 RYDLSAVGRMKFNRS 408 + + Sbjct: 413 SVAHIRRVKSPLAKR 427 >UniRef50_C6H0E8 RNA polymerase subunit B (Fragment) n=1 Tax=Acinetobacter sp. G13 RepID=C6H0E8_9GAMM Length = 287 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 137/289 (47%), Positives = 182/289 (62%), Gaps = 14/289 (4%) Query: 956 AKKDLSEELQILEAGLFSRIRAVLVA----GGVEAEKLDKLPRD--------RWLELGLT 1003 +KDL EE +I E R+ +L GG ++ DKL D LE+ Sbjct: 1 YRKDLKEEFKIFEEAARERVIRLLNGQESNGGGTTKRGDKLSEDVLSGLELVDLLEIQPV 60 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 DE +L Q+ E E ++K K+RK++ GD+L GVLK+VKVYLAVKRRIQPG Sbjct: 61 DEAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVVKVYLAVKRRIQPG 120 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 PVDIVLNPLGVPSRMN+GQILETHLGMAAKG Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVDIVLNPLGVPSRMNVGQILETHLGMAAKG 180 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 +GD+I+ M+K+Q+ V +LR+F+ + Y+ ++ DL + +DEE+++L+ NLR G+P+A Sbjct: 181 LGDQIDKMMKEQRTVLELRDFLDKIYNKVGGEQE--DLDSLTDEEILKLSGNLRAGVPLA 238 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 TPVFDGA+E +IKELL+L L ++GQ LYDGRTGE+F+RPVTVGYMYM Sbjct: 239 TPVFDGAEEGQIKELLQLAGLSSTGQTVLYDGRTGERFDRPVTVGYMYM 287 >UniRef50_Q0PPY8 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Echinoplaca strigulacea RepID=Q0PPY8_9LECA Length = 725 Score = 169 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 83/252 (32%), Gaps = 25/252 (9%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISA 500 DD DH G +R+ G + FR ++ + L +L Q +I ++ Sbjct: 1 DDSDHFGKKRLDLAGPLLAGLFRTLYYKLTKDANRALQKAVESGKSLELQSIIKPGILTN 60 Query: 501 AVKEFFGSSQLS-------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +K + S Q +++ S ++H RR + L R+ + Sbjct: 61 GLKYSLATGNWSEQKKAAQGKAGVSQVLNRYTYASTLSHLRRTNT----PLGRDGKIAKP 116 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R +H TH+G VCP ETPEG GL+ +L++ G P + + Sbjct: 117 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTV-GSPGWPVIDFLQSRNMELLEEYE 175 Query: 608 AIEEGNYVIAQAN----SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 + N H ++ R S V + ++ + Sbjct: 176 PSRNPHATKVFVNGTWVGVHPSPAHLHSQILALRRNNTISHE-VSIVRDIREREFKIFTD 234 Query: 664 GASLIPFLEHDD 675 + L D Sbjct: 235 AGRVSRPLFVVD 246 >UniRef50_Q74NB5 NEQ173 n=1 Tax=Nanoarchaeum equitans RepID=Q74NB5_NANEQ Length = 493 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 74/415 (17%), Positives = 161/415 (38%), Gaps = 51/415 (12%) Query: 191 KDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 K++ +V+I + + I + E++L ++ + + Sbjct: 110 KEDRWVKIGELPVMVRSKICNTYGLSEEELLKVYEDPLDPG------------------- 150 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I +V V + + +++++ + + + G+ + + G L Sbjct: 151 GYFIINGVDRVIVMEENLAPNQFY--VQENNGEYVGKMLSVRGGRKIPITIELKKDGILY 208 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + ++ L+ + G K E +I+ + D+ + + ++ Sbjct: 209 LTFSRLENVPLIPFVKVLGIKDNEIAQYLGNYEETFIN----LLEFADQDYESIILGKIK 264 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 PG T+E ++ +E L+ D Y L +G L +++ Sbjct: 265 IPG--LTKEEKQAKYERLYEIVDNYLLPHIGY-----------DPSLRRLKAINLLKYAS 311 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK-------ERLSLGD 483 KL+ + +G+ + DD DH N+RI G++ FR + +K +R + Sbjct: 312 KLLKLAHGEIKEDDRDHYMNKRILMAGDLVGELFRSAFYAQLQNLKYIYQRNAKRKKITS 371 Query: 484 LDTLMPQDMINAKPISAAVKEFF--GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE 541 ++ + D+ N + +A + G + +SQ +D+ N L+ + R++ L E Sbjct: 372 IEEFVSVDVFNQRIETAFATGQWVGGKTGISQLLDRTNYLATVWALNRVTT----SLEEE 427 Query: 542 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 E R H TH+GR+ PI+TPE +IGL +L++ ++ E + + Sbjct: 428 NEMIEARRTHGTHWGRLDPIDTPEDKSIGLRKALTLLSKITVDIEEEKILPIIKE 482 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 70/435 (16%), Positives = 138/435 (31%), Gaps = 91/435 (20%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M Y+ K I+K + + P + QLDSF I+ GL+ + V ++ Sbjct: 1 MEYNVYSKLLIKKYYEEHP-------ITRPQLDSFNWLIDH------GLKRIIQEVGKVE 47 Query: 61 -----SYSGNSELQYVSYRLGE--------PVF-DVQECQIRGVTYSAPLRVKLRLVIYE 106 + L V +G+ P E ++R +TYSAP+RV+ + Sbjct: 48 FEVTPEGVKEAYLVAVDIEVGKAQIIDIQGPRIIYPYEARLRQLTYSAPVRVRFQYY--- 104 Query: 107 REAPEGTVKDIKEQEVYMGEIPLMT------------------------DNGTFVINGTE 142 +G +K+ + V +GE+P+M G F+ING + Sbjct: 105 ---EDGELKEDR--WVKIGELPVMVRSKICNTYGLSEEELLKVYEDPLDPGGYFIINGVD 159 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW---LDFEFDPKDNLFVRID 199 RVIV + + +P F+ + Y +++ RG + E L++ Sbjct: 160 RVIVMEENLAPNQFYVQE-------NNGEYVGKMLSVRGGRKIPITIELKKDGILYLTFS 212 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG 259 R +P ++ L +I I + + + G Sbjct: 213 RLENVPLIPFVKVLGIKDNEIAQYLGNYEETFINLLEFADQDYESIILG----------- 261 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 +I + + +L E+ Y+ + + + +L Sbjct: 262 ------KIKIPGLTKEEKQAKYERLYEIVDNYLLPHIGYDPSLRRLKAINLLKYASKLLK 315 Query: 320 DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 ++ + + + + L +L L IY+ + T Sbjct: 316 LAHGEIKE---DDRDHYMNKRILMAGDLVGELFRSAFYAQLQNLKYIYQRNAKRKKIT-- 370 Query: 380 AAESLFENLFFSEDR 394 + E F++ Sbjct: 371 SIEEFVSVDVFNQRI 385 >UniRef50_Q23U98 DNA-directed RNA polymerase, beta subunit family protein n=6 Tax=Tetrahymena thermophila SB210 RepID=Q23U98_TETTH Length = 685 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 65/369 (17%), Positives = 118/369 (31%), Gaps = 69/369 (18%) Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + EKLD+ R + + ++ L ++ + K E + I + Sbjct: 373 FQHDLNYEKLDENGLIREGSVVRKGDIVIGKILILNQEDQIIDRSI--KFEYEEGIILKV 430 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 + + + + + Q GDK A R G KG I I MPY +GTP+DI++N Sbjct: 431 KQINVDGQQKIIIRFIIPLYPQIGDKYAARCGQKGTIGTIRDENQMPYTNDGTPIDIIIN 490 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P +RM IG +E + G +++ + D ++++ Sbjct: 491 PCSFSTRMTIGMNIEQYTSYLVLLTGLFLDSSMFC----------------DKIDRQEEI 534 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 + +++ G VF A+E + L E Sbjct: 535 QRNILGQKKIYYPLTGEFIGYAQVGFVFYAAQEQKAFSKLYAVGFN-------------E 581 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + V QP G GG R GEME+ Sbjct: 582 AYRNQVF------------------------------QPRDGAKNNGGSRLGEMEMAVFL 611 Query: 1280 AYGAAY----TLQEMLTVK----SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 + G + ++ + D N + KN + ++ + S + Sbjct: 612 SAGTTNHSDGFVVDICSHCGLYAHRDQNQQKYYCKNCNGKSEVVKTQIQYSSKHFKDLLN 671 Query: 1332 SLGINIELE 1340 SLG++I + Sbjct: 672 SLGMSIYFK 680 Score = 96.8 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 57/429 (13%), Positives = 138/429 (32%), Gaps = 85/429 (19%) Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR- 470 ++IE + + + ++ K+I + + + D N+R+ GE+ +F + Sbjct: 20 KDIEENYVTKAQFLGLMVYKIICVYLKLNQDESRDSYLNKRVVGCGELLYQKFENIYKKN 79 Query: 471 VERAVKERL-------------------------SLGDLDTLMPQDMINAKPISAAVKEF 505 + + ++ L SL + M ++N IS ++ Sbjct: 80 IIQNLRTNLFGNNSMFINKYYQTGYEDNNQSNQKSLDSIRNFMVDFVLNKNNISLDMENA 139 Query: 506 FGSSQLSQFMD-------QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + + S M ++ + I R +S P ++ + E R ++ G Sbjct: 140 IITGKWSTTMTGISKQLPNSSIPARIASLRMVSN-TPIFRNQQHSSLETRHINNNQLGFY 198 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI---HYLSAIEEGNYV 615 CP+ +P+G + + ++ Y +I + E N + Sbjct: 199 CPVGSPDGADC------------EGFEKIQGMYYSQQQIQNKTKIYLFEWCDIQEISNKL 246 Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD- 674 ++ + L+ + ++ + + Q+ P+ ++D Sbjct: 247 VSPSAQILEYNNFLRNSINPSTIPYPHCNYAPRNI----FAFVQMKRSVQK--PYSDNDL 300 Query: 675 --DANRALM---GANMQRQAVPTLRADKPLVGTGMERAVAVDSGV-----TAVAKRGGVV 724 D N+ L+ +Q + ++ GT + AV + G ++ R Sbjct: 301 RSDINQYLILGSAPLVQTMTTNMINTNEKFNGTNVCIAVLQEHGYQQEDSITISSRLAKS 360 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 Y+ +K + ++ Y + ++N + G V +GD++ Sbjct: 361 MYLQCKNGDVKNFQHDL-------------NYEKLDEN------GLIREGSVVRKGDIVI 401 Query: 785 DGPSTDLGE 793 E Sbjct: 402 GKILILNQE 410 Score = 79.9 bits (195), Expect = 6e-13, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 90/303 (29%), Gaps = 47/303 (15%) Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 + + + + Y + + + + NQ + Sbjct: 252 QILEYNNFLRNSINPSTIPYPHCNYAPRNIFAFVQMKRSVQKPYSDNDLRSDINQYLILG 311 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 P V + E G N+ +A + +GY EDSI +S R+ + Sbjct: 312 SAPLVQT----------MTTNMINTNEKFNGTNVCIAVLQEHGYQQEDSITISSRLAK-- 359 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 ++++Q ++ + + KLDE+G++ G+ V GDI++GK Sbjct: 360 ---SMYLQCKNGDVKNFQH-------------DLNYEKLDENGLIREGSVVRKGDIVIGK 403 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL 946 + + D S++ G ++ V+ DG +K Sbjct: 404 ILILNQEDQII-----------------DRSIKF-EYEEGIILKVKQINVDGQQK-IIIR 444 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 I + + K + Q G + + P + + Sbjct: 445 FIIPLYPQIGDKYAARCGQKGTIGTIRDENQMPYTNDGTPIDIIINPCSFSTRMTIGMNI 504 Query: 1007 KQN 1009 +Q Sbjct: 505 EQY 507 >UniRef50_A9SMS1 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SMS1_PHYPA Length = 201 Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 89/250 (35%), Gaps = 68/250 (27%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 KIV+V + + R GDK H KGVI I ED+P+ ++G +++NP Sbjct: 16 NKIVRVRILLYRFSIVGDKFISWHSQKGVIGAILSQEDLPFIKDGIAPGLIINP------ 69 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 H + + + ++ + Sbjct: 70 ---------HAIPSRITMNHLLEMVISR-------------------------------- 88 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 I F+ A + + + ++Y G T E VT Sbjct: 89 ---------------IDATAFNKAYRSF------EANTAKFSKEKMYYGATRLPIEAKVT 127 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G Y L H DK H+ S G +T+QPL G+++ G +F EME A+GAA Sbjct: 128 IGICYYHTLRHQARDKAHSISKGIIQSLTKQPLEGRSRKGRLQFREMEKDCPIAHGAASM 187 Query: 1287 LQEMLTVKSD 1296 L + L SD Sbjct: 188 LLKKLKNTSD 197 >UniRef50_B9HB57 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HB57_POPTR Length = 260 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 7/169 (4%) Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG--MPIATPVFDGAKEAEIKELLKLGDL 1204 + L + Q + F E L + + G ATPVF +I + L Sbjct: 90 NGHQLVSLACQTSEYDIFGKNEKAALGKGIACGGSKRCATPVFT-LSVDDIVDQLHRAKF 148 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 G R+Y+GRT E V VG ++ +L + +DK+ +TG +T P+ G Sbjct: 149 SRWGNERVYNGRTSEMVCSLVFVGPIFYQRLIDMAEDKVKFLNTGPVQPLTSHPVAG--- 205 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR-TKMYKNIVDGN 1312 FGG +FGE+E L A+GA+ L E L SD + K + Sbjct: 206 FGGIKFGEIERDCLIAHGASANLHECLFTFSDSSEMHICQKCKKCGQRD 254 >UniRef50_C5LIK5 DNA-directed RNA polymerase III subunit, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LIK5_9ALVE Length = 186 Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 15/151 (9%) Query: 1197 ELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM-LKLNHLVDDKMHARSTGSYSLVT 1255 +L + + + + G TGE E + VG ++ KL+H+V DK+HARSTG + +T Sbjct: 44 WILMVYPVERLVKEYIISGVTGEALECYIFVGRIHYCQKLDHMVMDKIHARSTGLVNQLT 103 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKMYKNIVDG 1311 +QP G+ + F E+ A+ L L + SD V R Sbjct: 104 RQPTEGRIKNA---F-ELSND------ASNVLLGRLMLSSDVFTAYVCRRCGSLSESAMS 153 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P + +L +E++++ I L+ E Sbjct: 154 ENIVNIRVPFACKLLFQELQAMHICPRLKVE 184 >UniRef50_UPI0001924FAA PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001924FAA Length = 304 Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 6/109 (5%) Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 T E + +G +Y KL H+V DKMHAR+ G +++T+QP G+++ GG R GEME Sbjct: 18 TREPLSAYIYMGPVYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERD 77 Query: 1277 ALEAYGAAYTLQEMLTVKSD----DVNGRTKM--YKNIVDGNHQMEPGM 1319 L YGA+ + E L + SD DV + + Y + M Sbjct: 78 CLIGYGASMLIVERLMISSDAFEIDVCSKCGLIGYSGCFSKLDSLRLSM 126 >UniRef50_Q2Z143 Putative uncharacterized protein n=1 Tax=Pseudomonas phage EL RepID=Q2Z143_9CAUD Length = 768 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 95/589 (16%), Positives = 179/589 (30%), Gaps = 72/589 (12%) Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA---------- 709 +V V ++LI F A R M NM ++VPT A + ++ TG E Sbjct: 56 LVGVSSNLILFPHEASAGRLYMAGNMIPKSVPTEGAGERMMVTGYEFEEHYGGTARKVEA 115 Query: 710 -----VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 V+ + G + I + DE + D+ L +Y N Sbjct: 116 PANMLVEEIFFVQSLVPGKDTDDW-NSIYVVFKNDE----QNAYDLLELPRYNTHNHYVG 170 Query: 765 INQMP------CVSLGEPVERGDVLADGP-STDLGELALGQNMRVAFMPWNGYNFEDSIL 817 + G +G V A P ++ GE VA + ED +L Sbjct: 171 FEYKYDKEKLRKLRKGATFAKGTVFAKSPRISENGEWCFAMPTLVAAYS-DQRTEEDGVL 229 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 ++ + H + T + P + + E GIV Sbjct: 230 ITRSYAERSACMFKHEFSYEWNEDEWIPLMLYGTDENPQPLPESGDNIREDGIVM----- 284 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFG--EKASDVKDSSLRVPNGVSGTVIDVQVFT 935 G + E L+ + V D P V V+ V V + Sbjct: 285 -------------GFRRRIKENALVSLTKKSLREPDLVYDKLFYAP--VDAVVMSVTVRS 329 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 R+ ++Q + + + + +++ + + A + + +P Sbjct: 330 ---DRMKNRSNNRGTDYIEQHHNAMLDRYEKRQNEMWNNVIRWYEGK-IAANRGEDIPIT 385 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 L+ + + L + E KL+ I + +V Sbjct: 386 FDLDTFIRNAYGNYTRNGLGRINPLARVERWDKLKDWNVTIELKE----------RVKGR 435 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 VK K AG +G+KGV ++ ++ P +GT + + + + R ++E Sbjct: 436 VK------FKYAGLNGDKGVCVRVIEDDEAPTYPDGTRAEFIKDNVPAFRRQIFSLLMEL 489 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 + + ++ + Q + + Y+ G ++ EE R + Sbjct: 490 SINYVNMNVQREVRHLRLQGDYEGAFQALMT-FYETGFPEFSELVAHALVTEEEKREHVD 548 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKL-GDLPTSGQIRLYDGRTGEQFER 1223 I+ V K + + L P Q + GE+ E Sbjct: 549 DVCRRKISVHVVSNTKLYGVNLINALRRQYPYKPQKAIIVNALGERVET 597 >UniRef50_D2EG09 RNA polymerase beta subunit n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG09_9EURY Length = 492 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 86/493 (17%), Positives = 165/493 (33%), Gaps = 53/493 (10%) Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 F+ NG +++I ++ P + K+ I S + + + Sbjct: 29 YFIGNGLKKIIDTEGLIEPVIKPAGVDDFKIKINKITIGKPDIIEADSIVRLI----NPM 84 Query: 195 FVRI-DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL--QMELVPERLRGET- 250 RI D P + + L E + + F + I +K L P L Sbjct: 85 EARIRDLTYDAPLMLSVSYLANGKEILEEEVFIGRMPIIVKSKYCNLYGLSPSELTEAKE 144 Query: 251 ------ASFDIEANGKVYVE-KGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 F I ++ + + I + ++ K V Sbjct: 145 DPTDPGGYFIINGTERIIITTEDLAPNNILISKDNQEGFKFSAKIFADADSIKVPHTLQM 204 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE----TLRVDPTNDR 359 S+ L + ++ + G + I L T+ Sbjct: 205 SSSNLLYITFGKLKRVPIVTLIKALGITNENEIIKKIGKDDDDIINTIDMNLIAFNTSSE 264 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL I +M+ T+E AE ++L F + S Sbjct: 265 NEALDSIGKML--HSIHTKETAELNIDSLLFP------------------FLGRDKDSRK 304 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 + + ++ V LI G+ D DH N+R+ + + FR ++ K Sbjct: 305 IKAEYVMYVSNLLIKSAL-AGKEVDKDHYSNKRLHAESYNLDMLFRFIFKQILNDAKYNF 363 Query: 480 SLGDLDTLMP--QDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRI 530 G +P + + + ++A ++ + Q +Q +D+ + S ++H R++ Sbjct: 364 ERGIRKDKVPDPKYIFTSDQLTARLRSALATGQWVGGRVGITQHLDRRSFPSTVSHLRKV 423 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 +L LT R + RD+H T +GR C +ETPEGP IGL +L++ + ++ G Sbjct: 424 ESL----LTSNRENYRARDLHGTQFGRFCAVETPEGPKIGLTKNLAMLSMMSKEGVDTET 479 Query: 591 YRKVTDGVVTDEI 603 + + +I Sbjct: 480 VKNLLKNYGVKKI 492 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 64/414 (15%), Positives = 142/414 (34%), Gaps = 78/414 (18%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-----NSELQYVS 72 LD L + + SF+ FI GL+ + I+ + +++ Sbjct: 10 LKSALDSTALAAHHISSFEYFI------GNGLKKIIDTEGLIEPVIKPAGVDDFKIKINK 63 Query: 73 YRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 +G+P + E +IR +TY APL + + + K+I E+EV Sbjct: 64 ITIGKPDIIEADSIVRLINPMEARIRDLTYDAPLMLSVSYL--------ANGKEILEEEV 115 Query: 123 YMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFD 158 ++G +P++ G F+INGTER+I++ +P Sbjct: 116 FIGRMPIIVKSKYCNLYGLSPSELTEAKEDPTDPGGYFIINGTERIIITTEDLAPNNIL- 174 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWL---DFEFDPKDNLFVRIDRRRKLPATIILRALNY 215 + ++A+I S + + L++ + +++P +++AL Sbjct: 175 ---ISKDNQEGFKFSAKIFADADSIKVPHTLQMSSSNLLYITFGKLKRVPIVTLIKALGI 231 Query: 216 TTE-QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 T E +I+ + I + +F+ + + G+ + + H Sbjct: 232 TNENEIIKKIGKDDDDIINTIDM-----------NLIAFNTSSENEALDSIGKMLHSIHT 280 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE 334 ++ + ++ + P ++ ++ E ++ +N+ + L K H + Sbjct: 281 KETAELNIDSLLFP--FLGRDKDSRKIKAE---YVMYVSNLLIKSALAGKEVDKDHYSNK 335 Query: 335 TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENL 388 L + + ND R + +P ++ L L Sbjct: 336 RLHAESYNLDMLFR-FIFKQILNDAKYNFERGIRKDKVPDPKYIFTSDQLTARL 388 >UniRef50_Q1KS34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chlamydophila pneumoniae RepID=Q1KS34_CHLPN Length = 229 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 1/177 (0%) Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-DLA 1043 + E ++++ ++ ++L + + E L+ L Y+ E + + I +GD DL Sbjct: 53 DQETIERIEQEDLVDLLMPNCEMYEVLKGLLSDYETALQRLEINYKTEVEHIREGDADLD 112 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 GV++ VKVY+A KR++Q GDKMAGRHGNKGV+SKI P DMPY NG V ++LNPLGV Sbjct: 113 HGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGV 172 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 PSRMN+GQ+LETHLG AAK G + + + ++ + + D Sbjct: 173 PSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQGLPEDGKSFLYD 229 >UniRef50_D1INW9 Whole genome shotgun sequence of line PN40024, scaffold_84.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1INW9_VITVI Length = 1309 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 71/192 (36%), Gaps = 21/192 (10%) Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 + + + ++++++D K +DD D++GN+R+ G++ F Sbjct: 652 NVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDLFK 711 Query: 470 RVERAVKERLSL-----GDLDTLMPQDMINAKPISAAVKEFFGSSQL------------S 512 + VK+ + I I+ ++ + S Sbjct: 712 TMISEVKKTIDAILAKPSRSSRFDFSQFIVRDSITVGLERTLSTGNWDVKRFRMHRKGMS 771 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 Q + + + + + H +IS + R R + P+ +G +CP +TPEG GL+ Sbjct: 772 QVVARLSYIGSLGHMTKIS----PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLV 827 Query: 573 NSLSVYAQTNEY 584 +L++ Sbjct: 828 KNLALMTHVTTD 839 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 95/242 (39%), Gaps = 49/242 (20%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY-SGNSELQYVSY 73 F P+ L V L+ LDSF F++ D ++ R+ I S + L++ Sbjct: 40 FPLLPEFLKVRGLVKQHLDSFNYFVKTD------IKKIVRANDRIVSSVDPSIYLRFKDV 93 Query: 74 RLGEPVFD---------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 R+GEP C++ +TY+AP+ V + + +++ +V + Sbjct: 94 RIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTR----VEKNDVVI 149 Query: 125 GEIPLMTDNG------------------------TFVINGTERVIVSQLHRSPGVFFDSD 160 G +P+M + FV+ GTE+VI+ Q S Sbjct: 150 GRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDT 209 Query: 161 KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQ 219 K + + V + + K+ +++++++ K+P I+++A+ ++Q Sbjct: 210 DKKGNINASVTSSTESTKSK----TVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGMESDQ 265 Query: 220 IL 221 + Sbjct: 266 EV 267 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 53/193 (27%), Gaps = 15/193 (7%) Query: 591 YRKVTDGVVTDEIHYLSAIEE---GNYVIAQAN---SNLDEEGHFVEDLVTCRSKGESSL 644 + + +++ LS E +++I F L R G+ Sbjct: 1113 VLFLCYSLGVEDLELLSGEELHTPNSFLIIFNGLILGKHRRPQRFANALRKLRRAGKIGE 1172 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 F V+ + S G + + D ++ + + ++ + +R + G+ Sbjct: 1173 FVSVFVNEKQ-HCVYIASDGGRVCRPVVIADKGKSRIKEHHMKELIDGVRTFDDFLRDGL 1231 Query: 705 ERA--VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 V ++ I + + +S +N Sbjct: 1232 IEYLDVNEENNALIALYEADAKPETTHIEIEP------FTILGVCAGLIPFPHHNQSPRN 1285 Query: 763 TCINQMPCVSLGE 775 T M ++G Sbjct: 1286 TYQCAMGKQAMGN 1298 >UniRef50_C1TQA8 DNA-directed RNA polymerase, beta subunit/140 kD subunit n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQA8_9BACT Length = 1692 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 85/375 (22%), Positives = 147/375 (39%), Gaps = 67/375 (17%) Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDK-RALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + G V+ + ++ K +I E++ + K +E L + ++R Sbjct: 364 WKGLTYEDGLVVSRSFAEKLKMKPKKQPTGKIYELKNEMLPKAGVKEFSELIEKIEEQVR 423 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + LP ++ L + K + ++RK Sbjct: 424 DLAGKKKKTYIFDKPLP---LPGYLAGEKSHSYPWFM----PGTLVNVSVKSVIDRKRK- 475 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD----ENGT 1092 D P ++IV + + R ++ GDK+ GR+GNKGV++KI + MP +GT Sbjct: 476 ----DSIPTKVEIVYEFD-IVRPLRIGDKITGRNGNKGVVTKIEEDDAMPKVVLKGPDGT 530 Query: 1093 ----PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 VD++++P + R N+GQILE G+A K +E + + ++R Sbjct: 531 ERVETVDLIISPCSIVGRKNLGQILEMGHGLALK------------AREWGLIDDEVKRD 578 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 + + L+ + + L++ KG +GA+E E++ Sbjct: 579 GLYRGEEWRNTVLTIL---KKLGLSDETDKGSGFPVRYREGAQEKEVRA----------- 624 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST-GSYSLVTQQPLGGKAQFGG 1267 GY Y+ +L H VD K+ AR T G + QP G A+ G Sbjct: 625 -----------------FCGYQYISRLVHHVDKKLQARGTDGPSNRFIGQPTSGGAKAG- 666 Query: 1268 QRFGEMEVWALEAYG 1282 QR GEME WA+ + G Sbjct: 667 QRLGEMENWAILSRG 681 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 11/107 (10%) Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQ------FMDQNNPLSEITHKRRISALGPGGL 538 D L ++ + + + F+ S + +D +N L + +R+++ Sbjct: 168 DKLKKDMLVILCKLESNLNSFWTSRSVRSGLVKALPLDDSNSLRCLELERQVT-----MA 222 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 ++ + VR H +H R+CP TPE IGL ++ A + G Sbjct: 223 SKVKTNGRVRLPHKSHKNRLCPFHTPESEKIGLQLFMTATAHQGDGG 269 Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 36/238 (15%) Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP 855 LG N VA MPW G +ED ++VS E++ Sbjct: 353 LGVNALVAVMPWKGLTYEDGLVVSRSFA------------------------EKLKMKPK 388 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV-- 913 + +L + G V L+ K+ + ++K Sbjct: 389 KQPTGKIYELKNEMLPKAG--VKEFSELIEKIEEQVRDLAGKKKKTYIFDKPLPLPGYLA 446 Query: 914 KDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973 + S P + GT+++V V + KR I + D+ L+I + Sbjct: 447 GEKSHSYPWFMPGTLVNVSVKSVID---RKRKDSIPTKVEIVYEFDIVRPLRIGD----- 498 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 +I GV + + + + G E+ ++ + + + ++ Sbjct: 499 KITGRNGNKGVVTKIEEDDAMPKVVLKGPDGTERVETVDLIISPCSIVGRKNLGQILE 556 >UniRef50_P41187 DNA-directed RNA polymerase subunit beta (Fragment) n=66 Tax=Alphaproteobacteria RepID=RPOB_LIBAF Length = 146 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 91/138 (65%), Gaps = 6/138 (4%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSVFP 58 + + RK FGK P+++D+P L+ +Q S+ +F+ + GL+AAF+SVFP Sbjct: 9 HCVQWSRGARKFFGKNPEIIDIPDLIEVQKASYDQFLMMNTAPEDRPNEGLQAAFKSVFP 68 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE--GTVKD 116 I+++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + ++KD Sbjct: 69 IKAFSGAAMLEFVSYEFDPPKFDVDDCLRRDLTYAVPLKIILRLIVFDVDEFTGAKSIKD 128 Query: 117 IKEQEVYMGEIPLMTDNG 134 IKEQ +YMG++PLMT +G Sbjct: 129 IKEQSIYMGDVPLMTKDG 146 >UniRef50_Q48975 DNA-directed RNA polymerase (Beta) (Fragment) n=1 Tax=Mycoplasma capricolum RepID=Q48975_MYCCA Length = 345 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 123/237 (51%), Gaps = 28/237 (11%) Query: 98 VKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF 157 +++ ++ ++ + V K EV++G+ PLMT+ GTF+ING+++VIVSQL RSPG +F Sbjct: 110 IQIDIIEDKKTSLICNVSIYKSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPGAYF 169 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN-------LFVRIDRRRKLPATIIL 210 + + + +G+++Y A IIP RG+WL++E D K L+V+ID+ RK AT +L Sbjct: 170 NKELNRK--TGEMIYFADIIPSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTATSLL 227 Query: 211 RALNYTTEQILDLFFEKVI-------------FEIRDNKLQMELVPERLRGETASFDIEA 257 A + + IL++F + F+I E+ + +GETA+ + + Sbjct: 228 LAFGISKDDILNIFDNDEVLVETLQQDSIIGDFKIDWLNQVQEIYKKIRQGETATSEGAS 287 Query: 258 N--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + +K + + R K + + I KV+A+D +D + LI Sbjct: 288 KFINSILFDKRKYDLTKAGRFKLKQKLSI----KNRILNKVIAEDILDANNNVLIAK 340 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 64/383 (16%), Positives = 126/383 (32%), Gaps = 65/383 (16%) Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 +S L ++ EP V++ + Y AP+ L+L + + E + + +++ Sbjct: 11 SSVLTLENWGFKEPRLSVRQAREESKIYDAPIYANLKLSVNKTEEIQKEFDGVDQEDTL- 69 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 +V+ L G + K S + I Sbjct: 70 ------------------KVLTHWLEEKTG--NGNITFKQQSQNSYFFEITIKKS----- 104 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + D + + I +K + + ++ + P Sbjct: 105 ----EKPDLIQIDIIEDKKTSLIC-------------------NVSIYKSGEVFLGDFP- 140 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 L E +F I + KV V + R + + + + I + +Y + Sbjct: 141 -LMTEAGTFIINGSQKVIVSQLVRSPGAYFNKELNRKTGEMIYFADIIPSRGTWLEYETD 199 Query: 305 STGE-------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT- 356 S L + + L G + + L N D+ + ETL+ D Sbjct: 200 SKKIGSDAINPLYVKIDKSRKTTATSLLLAFGISKDDIL--NIFDNDEVLVETLQQDSII 257 Query: 357 ----NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 D L+ + EIY+ +R GE T E A ++ F + +YDL+ GR K + L + Sbjct: 258 GDFKIDWLNQVQEIYKKIRQGETATSEGASKFINSILFDKRKYDLTKAGRFKLKQKLSIK 317 Query: 413 EIEGSGILSKDDIIDVMKKLIDI 435 + ++++D + LI Sbjct: 318 NRILNKVIAEDILDANNNVLIAK 340 >UniRef50_Q9EMY3 AMV066 n=2 Tax=Entomopoxvirinae RepID=Q9EMY3_AMEPV Length = 1196 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 83/447 (18%), Positives = 144/447 (32%), Gaps = 87/447 (19%) Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV-LVAG 982 G +++ + R +L + +L + + + +S+I A L + Sbjct: 784 EDGVIVNKESINR--GLLSVISLMSVKNELSDTQINNNNPSAENSNNNYSKISATGLPSI 841 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 G + D L R + D+ + + R QG DL Sbjct: 842 GTVLVQGDALYRCLKPKFKNDDDNRYIFDQSETLSN--------TYPAVVERTRKQGTDL 893 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 + + L+ RR+ GDK+A K +SKI EDMPY+ENG DI+ N Sbjct: 894 IK-----IDMLLSSYRRLSVGDKIAKSV-QKVTVSKIMEEEDMPYNENGERPDIIFNSPS 947 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 + SR L EV+ F + Y+ DV Sbjct: 948 IISRKT-----------------------LPLYDEVSLCNMFSKIPYNDKCDVEYINYPI 984 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF- 1221 + + ++ I V D E I + LY T + Sbjct: 985 YTDKSPLDKYNFIKKELKKIYNNVTDEELENII-----------YCRQTLYHPYTKKPMT 1033 Query: 1222 ------ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 E +G M +L+ + DK+ R+ G Q P G K G + GEME Sbjct: 1034 IKEGDKETKSFMGPMLFCRLSQMSADKISVRNRGRLDKYMQAPSGKKKGG-GIKIGEMES 1092 Query: 1276 WALEAYGAAYTLQEMLTVKSD--------DVNGRTKM-----------------YKNIVD 1310 G+ Y + E+ +SD + G + +N+ Sbjct: 1093 DVFATNGSVYAIHEL---QSDPDEFYLPAHICGNCGIFATYEENIEVKRWKCLQCENLGL 1149 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINI 1337 ++ + + + + + + GI++ Sbjct: 1150 SPEIIKMRLTYATKIFITLLNARGISL 1176 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 132/1018 (12%), Positives = 298/1018 (29%), Gaps = 150/1018 (14%) Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY 215 + K Y + +G + + + I + ++ Sbjct: 64 VIMKITYEGKEDNKKSYLYSSLDNKGFYTYISISISIYRKITSLNNKIEYKIISNKTYSH 123 Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERL------RGETASFDIEANGKVYVEKGRRI 269 T +I DN + P + + IE K + Sbjct: 124 TEIRIPQYIAHGGNTSENDNSITQSNNPGGFFNVSKSLKKMVTTRIEQTYIYPKRKKTQK 183 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID--ESTGELICAANMELSLDLLAKLSQ 327 + + + + + + D + +I + L +D++A + Sbjct: 184 AYTYHLAFISKKPSFMMINEKLNPPQFLTLDIDFNPDKIKCVIDSKKTFLQIDIIALIIA 243 Query: 328 SGHKRIETLF--------TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 + I+ ++ + D + E + + A + +++ Sbjct: 244 LSNDNIDVVYKKISSGFSDDISDSIKILIENTKNILSEYNNDARQYVDKIIEINYIKKYP 303 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 E ++ F + L +GR K+N + ++ L Sbjct: 304 KNEITLQDYFNNIFNDFLPHIGRGKYNEK----------------CMYMISILRQSFVSI 347 Query: 440 GEVD---DIDHLGNRRIRSVGEMAENQFRVGL---VRVERAVKERLSLGDLDTLMPQDMI 493 + D D D+L RRI + ++ EN R + + R + G +++ Sbjct: 348 FQSDVYPDKDNLATRRISTAADIFENIIRTSIDNSFELARDKYKTYISGSGKNNNINNIL 407 Query: 494 NAKP----ISAAVKEFFG-----SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE-RA 543 + I+ A FF +S + + +N I IS G++ E Sbjct: 408 SQVKLLPQITQAFNNFFNMQDTKNSDVVKIGTHSNWAESI----YISNAVERGVSIELTK 463 Query: 544 GFEVRDVHPTHYGRVCPIETPE-GPNIGLINSLSVYAQTNEYGF-----LETPYRKVTDG 597 R +H + + ++TP+ G GL+ L + + Y L R+ + Sbjct: 464 SLTQRKLHASSINVLDMMDTPDHGTKTGLVKRLCISTLISHYPIHIRKQLFEEVREFIEN 523 Query: 598 VVTDEI-------HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 V + ++S I+E +VIA+ E F++DL + G Sbjct: 524 KVKHTLKEDIISGVFISIIDESEHVIAR--IKNSETESFIKDLKYAKISGLFVK------ 575 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 + + + + + + ++ D + + +R P R + G Sbjct: 576 NDIGIEILKFHELDNNKQIYVPTDRYFQIRINVGNKRATQPVFRVEN-----GELAFNKY 630 Query: 711 DSGVTAVAKRGGVVQYVD-ASRIVIKVNEDEMYPGEAGIDIYNLT----------KYTRS 759 + + + +V I+ ++ +M + Y R Sbjct: 631 PNLHAELKESNSYTDFVTKYYDIIEVIDVGQMIYSNMCNTVTEFNSYSLEQRKKYDYVRL 690 Query: 760 NQNTCINQ-------------MPCVSLGEPVERGDVLADGPSTDLGEL------------ 794 + + ++ P + + Sbjct: 691 PNYLYFSYLTSTGCMYDIGKMTGVRGTFGTAQSKHIITGPPDNVMNKYDTCNYLAYPIER 750 Query: 795 ----------------ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 ++G ++ V F +N YN ED ++V++ + + I + + Sbjct: 751 PSITNIPMEISGIARNSIGTHVLVGFFSFN-YNVEDGVIVNKESINRGLLSVISLMSVKN 809 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 DT++ +A+ N SK+ +G+ IG + GD L + PK + Sbjct: 810 ELSDTQINNNNPSAENSN---NNYSKISATGLPSIGTVLVQGDALYRCLKPKFKNDDDNR 866 Query: 899 EKL-LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR----------DGVEKDKRALE 947 V + + + G ID+ + + V+K + Sbjct: 867 YIFDQSETLSNTYPAVVERTRK--QGTDLIKIDMLLSSYRRLSVGDKIAKSVQKVTVSKI 924 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 +EE + + ++ + SR L K+P + ++ Sbjct: 925 MEEEDMPYNENGERPDIIFNSPSIISRKTLPLYDEVSLCNMFSKIPYNDKCDVEY-INYP 983 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 + ++Y+ +K E +K + +++ + Y I+ GDK Sbjct: 984 IYTDKSPLDKYNFIKKELKKIYN--NVTDEELENIIYCRQTLYHPYTKKPMTIKEGDK 1039 >UniRef50_A5AMN9 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A5AMN9_VITVI Length = 496 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 11/180 (6%) Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 G I ++ F+ + A + LK +E +QIL+ + ++ + Sbjct: 259 GRCIVMKKFSAVNQRYENNASDRIVRPLKVGHD--AERMQILDDDGLAAPGEIIKPNDIY 316 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 K + L + + + + F+ Sbjct: 317 INKESPIITKGPLISPVGLPDSAYK---------PSRQTFKGPEGEASVVDRVALCSDKN 367 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 +K + RR + GDK + RHG KGV I ED P+ E G D+++NP G P Sbjct: 368 SNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPR 427 Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 17/245 (6%) Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 TK R + + V P+ + +L GQN VA M ++GY+ E Sbjct: 192 TKLCRMDSLLYL----LVYPQRPLLTTRTI---ELVGYDKLGAGQNATVAVMSYSGYDIE 244 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK--LDESGIV 871 D+I++++ + I +++ + V++ + + VG A LD+ G+ Sbjct: 245 DAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVGHDAERMQILDDDGLA 304 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS--SLRVPNGVSGTVI 929 G + DI + K +P L + G S K S + + P G + V Sbjct: 305 APGEIIKPNDIYINKESPIITKGP------LISPVGLPDSAYKPSRQTFKGPEGEASVVD 358 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 V + + + L + + K S Q G + + L Sbjct: 359 RVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDL 418 Query: 990 DKLPR 994 P Sbjct: 419 IMNPH 423 >UniRef50_P05472 Probable DNA-directed RNA polymerase n=4 Tax=Saccharomycetaceae RepID=RPOL_KLULA Length = 982 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 11/153 (7%) Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 + LG + G+ Y + E + VG L L H VDDK+ R+ G+ +V Sbjct: 555 FPSRMTLGQIKEMGEKEEYVYIEDTKLENKIIVGKCLYLALRHQVDDKVQFRNGGNIDIV 614 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE-----MLTVKSDDVNGRTKMYKNIV 1309 T+QP+ G+ + GG RFG+ME L GA T++E +K D GR N + Sbjct: 615 TKQPVSGRKRSGGLRFGQMERDILIGLGAWNTIKEIWSIDRSKIKIDSKTGRI----NWI 670 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +ME G + F + L +RSLG +I ++++ Sbjct: 671 RYDKEMEIG--QYFKICLSYMRSLGRDILIKND 701 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 69/404 (17%), Positives = 131/404 (32%), Gaps = 45/404 (11%) Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD------DIIDVMKKLI 433 + E + FS+DR LS ++ L + DII Sbjct: 84 NNIKIKEKIHFSKDRAYLSDDSIIQIKDMFNMTIKNNKNTLKWNLPLNWSDIIKYSDHKK 143 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQ--FRVGL-VRVERAVKERLSLG-----DLD 485 ++ N +D + + I++ ++ F L +R E + RL D+ Sbjct: 144 ELENHLKIIDSFNKKAEKPIKNEIDLISLCYMFECWLGLREEPRLYYRLVTPGELIHDII 203 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + + + VK +S+ M N + ++ RRI+ +R A Sbjct: 204 KEKRSVIKCFRTNTWTVKNIRNVFCVSEDMKHYNKIGDLESIRRITI----PSSRSNAPM 259 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 + R V ++CPI+T +G G I L A+ K +G+ T Sbjct: 260 KERRVEDNDKYKICPIQTSDGSLCGTITYLCKDAKITTK-IDTIIVEKADNGLHT----- 313 Query: 606 LSAIEEGNYVIAQANSNLDEEG-HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 N+ L + E + C K + ++ + + S Sbjct: 314 -----------FFNNTYLGKVKVKTKESDIYCIDKICYIFGNIGRI----IKGNYLCSYT 358 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 L+ + ++ R++ NM +QA+ + + + D G Sbjct: 359 GELLDYKNYNPPIRSMFVCNMIKQAITGDSVYSGDILHNTKSLINGDLGHKLEIAIMPWK 418 Query: 725 QYVDASRIVIKVNEDEMYPGEAGI-----DIYNLTKYTRSNQNT 763 ++ IVI +++ + I D+ L Y NQN Sbjct: 419 KFNIEDAIVISNKVSKLFRSKRTIIHRENDVKILNVYVNINQNI 462 Score = 49.8 bits (117), Expect = 7e-04, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 93/290 (32%), Gaps = 16/290 (5%) Query: 753 LTKYTRSNQNTCINQMPCVS-LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 Y ++ + M + G+ V GD+L + S G+L G + +A MPW +N Sbjct: 364 YKNYNPPIRSMFVCNMIKQAITGDSVYSGDILHNTKSLINGDL--GHKLEIAIMPWKKFN 421 Query: 812 FEDSILVSERV--VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 ED+I++S +V + + T IH + + + IT G+ D Sbjct: 422 IEDAIVISNKVSKLFRSKRTIIHRENDVKILNVYVNINQNIT-----KGDLLYRTYDPMQ 476 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 + I D GKV + + L++ E + SS+ G+ + Sbjct: 477 VKTINFVYAEHD---GKVKEIIREEKYLKLILIKERDLEVGDKM--SSMHGQKGIVSLIE 531 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 + + EK + L I + E + I + + K Sbjct: 532 NNMPYYYKNGEKVEIDLIINPHAFPSRMTLGQIKEM-GEKEEYVYIEDTKLENKIIVGKC 590 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 L ++ + N + K + R I G Sbjct: 591 LYLALRHQVDDKVQFRNGGNIDIVTKQPVSGRKRSGGLRFGQMERDILIG 640 >UniRef50_A9U5J3 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9U5J3_PHYPA Length = 499 Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 89/299 (29%), Gaps = 37/299 (12%) Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI 616 +CP E EGP+I ++ LS TPY V V + + L + ++ Sbjct: 164 YICPCEILEGPDISVVKYLSSTCTI-------TPY--VDPDDVLNHLGILPQGNDALFIN 214 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 + +E R S + Q S P L + Sbjct: 215 GLFVTRTSKESVLRSLKAYKRKGEAFMFVSVYYSSDKKIHIQTTRSRYNR--PLLICTNG 272 Query: 677 NRALMGA--------NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV-----AKRGGV 723 + + + + + + T + + V + Sbjct: 273 STPVYSNTTVDDIHKAGMLEMIDATEQMQCFIATTHDSICNQHTHVEIHPSFMFGLFASM 332 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 Y + ++ V + M + ++ +T ++ Q P Sbjct: 333 TPYANFNQSSRIVFQSAMSKQAMPLTLHIMTSIVSDSKILTYAQKPK------------- 379 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 ++ + N+ +A + + GYN EDS+L ++ + F++I + + + Sbjct: 380 CTTIISNTIKEYNRVNVVIAVLSYFGYNQEDSLLFNKSSIGRGLFSSIKYEVVEIIENK 438 >UniRef50_UPI0001926473 PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2 n=1 Tax=Hydra magnipapillata RepID=UPI0001926473 Length = 534 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 57/424 (13%), Positives = 131/424 (30%), Gaps = 66/424 (15%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 KR+ + P L V L+ +DSF FI + + + L Sbjct: 8 KRVEDKWKLVPAFLKVKGLVKQHIDSFNYFINTEIKDIVKANERVQ-----TDADPVWYL 62 Query: 69 QYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 +Y+ +G P + EC++R +TYSAP+ V + + + Sbjct: 63 KYLDVHVGAPDVEESFNVSRPVAPHECRLRDLTYSAPITVDIEYT--------RGNQRVV 114 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLYNA 174 + +G +P+M + V+ G + +++L+ P G F K + L Sbjct: 115 RNSLPIGRMPIMLRSSNCVLAGKNEIELAKLNECPIDPGGYFVVRGSEKVLLIQEQLSKN 174 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+I E D K++ + + EKV + Sbjct: 175 RMI--------VELDTKNH---------------------QEKDAEIAELSEKVKRLEEN 205 Query: 235 NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 N + + + G + +++ H L K + + + Sbjct: 206 NANLPPSSSPAVCYSQIAKQLAKPGSELYDASIKVSKSH-EILSSKKSKNVVIFGLPNSQ 264 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAK---------LSQSGHKRIETLFTNDLDHGP 345 K + +D + + + ++ L + K + F N++ Sbjct: 265 KTIIEDRKTDDRNMVNKLIRLLNRRIIIKSTFRLESKVPLVNNASKPLVVEFENEVAQNE 324 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF 405 ++ + ++ +++ E + ++ ++ ++ V Sbjct: 325 MLAAARELSTIEAYKKFKLDSIKIIDGYELYQADRNRIGGVAIYVNKRLTNIEIVNVHLN 384 Query: 406 NRSL 409 N+ + Sbjct: 385 NKEI 388 >UniRef50_A9SWU4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SWU4_PHYPA Length = 440 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 89/276 (32%), Gaps = 24/276 (8%) Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL-- 468 + L + + + + + IDH + + G + E+Q Sbjct: 155 LKVSLSHNNLVNIFAVMKVLRKTIASAKREILSWIDHP--KEVL--GLLLESQLDATTLD 210 Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 + + + L+ D D Q I + +SQ + + L ++H R Sbjct: 211 SNIIHSTERNLATLDDDKKDIQSNFKTG-IWKGYTQGDNKRTISQMLSSKSILDSLSHVR 269 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+ ++ERA +R +H T G +CP ETPEGP++G + LS Sbjct: 270 RVEI-----SSKERASAIMRQIHLTQLGYICPCETPEGPDVGAVKYLSSTCTI------- 317 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 PY V V + + L + ++ + ++ R S Sbjct: 318 IPY--VDPDDVLNYLGVLPQENDALFINRLFIARTSKDNILRSIKAYKRKGEVFMFVS-- 373 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 + Y + + L A + +N Sbjct: 374 -IYYSSDKEMHIQTTRGRYSRPLLICTNESAPVCSN 408 >UniRef50_UPI0000E4A667 PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide B, partial n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A667 Length = 224 Score = 99 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 75/244 (30%), Gaps = 24/244 (9%) Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 T +E T + G++ Y ++ + M G+ + + R + Sbjct: 2 TTHLEIE-----PFTILGVCAGLIPYPHHNQSPRNTYQCAM--GKQAMGTIAYNQRNRID 54 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 + P P+ + + +L GQN VA M ++GY+ ED++++++ Sbjct: 55 TLMYLLAYPM----APLVKSKTI---DLIGFDKLPAGQNAVVAVMSYSGYDIEDALILNK 107 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 V + + K P + + D + Sbjct: 108 ASVDRG------ERVINKQVLLNKSMPVVNMNPLQASPTNQPQQHDYREVPI--TYKGTA 159 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV--QVFTRDG 938 D + KV + K+L K SS GV G ++ F G Sbjct: 160 DSYIEKVLVTSNPEEAFLFKVLLRQTRRPEIGDKFSSRHGQKGVCGLIVQQEDMPFDERG 219 Query: 939 VEKD 942 + D Sbjct: 220 ICPD 223 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 18/217 (8%) Query: 887 VTPKGETQLTPEE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFTRDGV 939 + P +P + + G A + + D+ + + ++ + G Sbjct: 19 LIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQRNRIDTLMYLLAYPMAPLVKSKTIDLIGF 78 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 +K + + D+ + L + ++ V K + L+ Sbjct: 79 DKLPAGQNAVVAVMSYSGYDIEDAL--ILNKASVDRGERVINKQVLLNKSMPVVNMNPLQ 136 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 T++ +Q+ ++ Y + +K+ P + KV L RR Sbjct: 137 ASPTNQPQQHDYREVPITYKGTADSYIEKVLV---------TSNPEEAFLFKVLLRQTRR 187 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + GDK + RHG KGV I EDMP+DE G DI Sbjct: 188 PEIGDKFSSRHGQKGVCGLIVQQEDMPFDERGICPDI 224 >UniRef50_UPI0001742D24 DNA-directed RNA polymerase beta chain n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742D24 Length = 107 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 10/100 (10%) Query: 66 SELQYVSYRL---GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 +L+Y+ Y + EP+ D EC+ RG TYS L+V+L+L +I+E V Sbjct: 1 MKLEYLWYEIHDNDEPLNDELECKKRGKTYSGQLKVRLKLTNKR-------TGEIQETLV 53 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKG 162 + G+IPLMTD TF++NG ERV++SQLHRSPG+ F+ + Sbjct: 54 HFGDIPLMTDKATFIVNGAERVVISQLHRSPGITFNKELN 93 >UniRef50_C0SZK4 DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Borrelia burgdorferi 29805 RepID=C0SZK4_BORBU Length = 115 Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 8/109 (7%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIE------QDPEGQYGLEAAFRSVFPIQSY 62 KR+ G+ ++LD+P L+ IQL+S++KF++ + P GLE+ FR++FPI+S Sbjct: 3 KRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKSKKPLLNEGLESVFRNIFPIKSG 62 Query: 63 SGNSELQYVSYRLGEPV--FDVQECQIRGVTYSAPLRVKLRLVIYEREA 109 +G+ L+Y Y + F +EC+ +G +Y A L+V+L L Sbjct: 63 NGDVALEYERYYIENDALNFTEKECKRKGQSYEAVLKVRLNLQFLTTGE 111 >UniRef50_B9RDB2 DNA-directed RNA polymerase beta chain, putative n=1 Tax=Ricinus communis RepID=B9RDB2_RICCO Length = 173 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 40/81 (49%), Positives = 56/81 (69%) Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 E + R + E + +QV + Q S+GASLIPF+EH+DAN+ALM +NMQRQAV Sbjct: 87 EQVAPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANQALMSSNMQRQAV 146 Query: 691 PTLRADKPLVGTGMERAVAVD 711 P R++K +VGTG+ER VA++ Sbjct: 147 PLSRSEKCIVGTGLERQVALE 167 >UniRef50_UPI0001924FA9 PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924FA9 Length = 164 Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 Y ++ + + + K+ + ++K+ + RR + GDK + RHG KG Sbjct: 18 TTDYKDVPTSYHGPIPSYVEKVLISSTMED--AFLIKMLMRQTRRPEIGDKFSSRHGQKG 75 Query: 1075 VISKINPIEDMPYDENGTPVDIVLN 1099 V I EDMP+ + G DIV Sbjct: 76 VCGLIVNQEDMPFTDLGICPDIVTF 100 >UniRef50_D2J6W7 Putative uncharacterized protein n=1 Tax=Staphylococcus sp. CDC3 RepID=D2J6W7_9STAP Length = 1807 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 88/282 (31%), Gaps = 27/282 (9%) Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 K + + + + L+ + + D R Q Sbjct: 690 RYFNKGNQVLNTGEVVQTTDGIVGSALIKDNLPFTEGDPGDRSMMAGNQYMKARNVEQAN 749 Query: 1013 QLAEQYD----ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 Y E +K ++ I G D + ++ GDK++ Sbjct: 750 VAYITYKGYTFEDGSVISEKFAREQGAIVNGYDENGDPI-----------PLEVGDKISD 798 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 HGNK IS + D + EN +D+++NP VPSR+N G +LE Sbjct: 799 LHGNKSTISYVASENDDVFKEN-PNLDVIMNPHSVPSRLNTGLVLEMQ--------NSGE 849 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 + E + + S DE + ++LR+G + Sbjct: 850 ETPVYHNGERIASSAPLNVVITDITARDKTKTYSDEYDENGQLVEKSLREGRLFGNQLAW 909 Query: 1189 GAKEAEIKELLKL---GDLPTSGQIRLYDGRTGEQFERPVTV 1227 A E+ +K ++ + +++ Y TG + + Sbjct: 910 VANGLELDNTMKEVYGSNIKSFEKLKAYLNVTGLDIDEDTAI 951 >UniRef50_D1I1U7 Whole genome shotgun sequence of line PN40024, scaffold_79.assembly12x (Fragment) n=2 Tax=core eudicotyledons RepID=D1I1U7_VITVI Length = 191 Score = 80.3 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 59/109 (54%), Gaps = 4/109 (3%) Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GT ++NG R++++Q+ +SPG+++ S+ +G +Y I+ G L+ E D K Sbjct: 31 GTSIVNGLYRIVINQILQSPGIYYRSE---LDHNGISVYTGTIVSDWGGRLELEIDRKAR 87 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLF-FEKVIFEIRDNKLQMEL 241 ++ + R++K+ ++ A+ +IL+ + ++ ++K + E+ Sbjct: 88 IWSHVSRKQKISILVLSSAMGSNLREILENVCYLEIFLSFLNDKEKKEI 136 >UniRef50_C5Y5J9 Putative uncharacterized protein Sb05g004163 (Fragment) n=1 Tax=Sorghum bicolor RepID=C5Y5J9_SORBI Length = 79 Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ-QPLGGKAQF 1265 G + +GRTGE+ + V + + +L H+ +DK+ +T +T QP + Sbjct: 3 MGSENILNGRTGERMQSLVFMDPTFYQRLIHMSEDKVKFHNTEPVQPLTSLQPAADRKGL 62 Query: 1266 GGQRFGEMEVWALEA 1280 E W + A Sbjct: 63 VELNL---EKWRVIA 74 >UniRef50_C7AA72 RpoB (Fragment) n=36 Tax=Alphaproteobacteria RepID=C7AA72_9BRAD Length = 134 Score = 79.5 bits (194), Expect = 9e-13, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI--EANGKV 261 LP T ++ AL EQIL F++K+I++ ++ R RG + D+ GKV Sbjct: 1 LPVTSLMFALGLDGEQILATFYKKLIYKRIKEGWRVPFDANRFRGYSTVNDLIDADTGKV 60 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 +E G+++T R RQL++ +K + + E + G +A+D ++ TGE+ A E++ L Sbjct: 61 VLEAGKKLTVRAARQLQEKGLKALRMSDEELLGNYIAEDLVNPKTGEIYAEAGEEITDKL 120 Query: 322 LAKLSQSGHKRIE 334 L++ G+K + Sbjct: 121 FKVLNEQGYKDLP 133 >UniRef50_P90631 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Moneuplotes crassus RepID=P90631_EUPCR Length = 205 Score = 77.2 bits (188), Expect = 4e-12, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 67/190 (35%), Gaps = 51/190 (26%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-------------- 60 + L+S Q+ SF +F+ + + V Q Sbjct: 15 WALIKAYFQQHGLVSQQISSFDRFLSYTIQDIVAENSIMSIVPEKQYAPGVRLYLTLGNE 74 Query: 61 --SYSGNSELQYVSYRL-GEPVFD----------VQECQIRGVTYSAPLRVKL--RLVIY 105 E++ ++ +P F E ++R +TY + V++ R + Sbjct: 75 NQDRDLRYEIELGQVKVNEKPRFKEYDDKYNVIFPNEARLRNLTYQTSVYVEVTKRDKVT 134 Query: 106 EREAPEGTVKDIKEQEVYMGEIPLM----------------------TDNGTFVINGTER 143 + E ++ KE+EVY+G++P+M G F+ING+E+ Sbjct: 135 NSKGVEEVLEKRKEKEVYIGKVPVMIKSAFCSLNRIENEYEMKECFFDQGGYFIINGSEK 194 Query: 144 VIVSQLHRSP 153 V+V+ + Sbjct: 195 VLVAHEKMAT 204 >UniRef50_Q36704 (S1 sensitive region) (Fragment) n=4 Tax=Embryophyta RepID=Q36704_9ASTR Length = 98 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 13/107 (12%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVF 80 +P IQ + F +FI+Q GL I+ + + ++ Y+L EP+ Sbjct: 3 TIPGFNQIQFEGFCRFIDQ------GLAEELSKFPKIEDTNQEIDFEFFLERYQLVEPLI 56 Query: 81 DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 ++ +TYS+ L V RL+ + I+EQ + +G+I Sbjct: 57 KERDAVYESLTYSSELYVSARLIWKNDRR-----RYIQEQTILIGKI 98 >UniRef50_UPI00016982A9 DNA-directed RNA polymerase subunit beta n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016982A9 Length = 64 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 27/41 (65%), Positives = 36/41 (87%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ 41 M YS+TEKKRIRKDFGKR +LDVP+LL+ Q++SF+ F++Q Sbjct: 1 MAYSFTEKKRIRKDFGKRTSILDVPFLLATQIESFRDFLQQ 41 >UniRef50_B3RKF6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RKF6_TRIAD Length = 224 Score = 64.1 bits (154), Expect = 4e-08, Method: Composition-based stats. Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 57/211 (27%) Query: 13 KDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGNSE 67 KD+G+ + + + ++SF + GL AA + + + + Sbjct: 19 KDYGRLAATQNKYLQEFVQPHIESFNFLLRD------GLSAAVKDIRQEELQLNDGRRIS 72 Query: 68 LQYVSYRLGEPVFD------------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 + + +G+P EC+ G TY A +V + ++ + Sbjct: 73 IYFKDALIGKPTVSEAGSYSSNTILYPAECRELGSTYGANFQVTI---NWDVDGETSGSL 129 Query: 116 DIKEQEVYMGEIPLMTD------------------------NGTFVINGTERVIVSQL-- 149 I +G IP+M G F++NG E+VI + Sbjct: 130 GIP-----LGRIPMMVKCKNCSLYNLTPEQLVAHHDEAEEAGGYFIVNGLEKVIRMIVLP 184 Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 R+ + K + Y I R Sbjct: 185 RRNYPMAISRPSWKNIGASFSEYGIIIRCVR 215 >UniRef50_Q8KRK0 RpoB protein (Fragment) n=1 Tax=Pediococcus pentosaceus RepID=Q8KRK0_PEDPE Length = 66 Score = 60.2 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 51/55 (92%), Positives = 54/55 (98%) Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 AIEEGN+VIAQANSNLD++G FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS Sbjct: 1 AIEEGNFVIAQANSNLDDDGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 55 >UniRef50_Q7SXI3 Zgc:66298 protein n=2 Tax=Danio rerio RepID=Q7SXI3_DANRE Length = 150 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 6/44 (13%), Positives = 16/44 (36%) Query: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P F + E+ ++ I I+L+ + Sbjct: 107 CTYKTICLLCNKSDSIETVSVPYVFKYFVAELAAMNIKIKLDVK 150 >UniRef50_B5Z8J4 DNA-directed RNA polymerase, beta subunit n=1 Tax=Helicobacter pylori G27 RepID=B5Z8J4_HELPG Length = 67 Score = 53.7 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF 57 M K R+R DF K P L+VP LL +Q DS+ F+ + G++ Sbjct: 1 MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGMKRFLNPFS 57 >UniRef50_B9U5W9 RNA polymerase beta subunit (Fragment) n=21 Tax=Acinetobacter RepID=B9U5W9_9GAMM Length = 116 Score = 52.9 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 42/115 (36%), Positives = 55/115 (47%), Gaps = 12/115 (10%) Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEK------------LDKLPRDRWLELGLTDEE 1006 DL EE +I E R+ +L L L LE+ TDE Sbjct: 1 DLKEEYKIFEEAARERVIRLLKGQESNGGGSTKRGDKLVEDMLSGLELVDLLEIQPTDEA 60 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 +L Q+ E E ++K K+RK++ GD+L GVLK+VKVYLAVKRRIQ Sbjct: 61 IAERLSQIQVFLKEKSAEIDEKFAEKKRKLSTGDELTTGVLKVVKVYLAVKRRIQ 115 >UniRef50_UPI00006CCB8E hypothetical protein TTHERM_00437410 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CCB8E Length = 1075 Score = 46.0 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 43/321 (13%), Positives = 108/321 (33%), Gaps = 18/321 (5%) Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 Y T + L+ E ++ +++E ++L + D + + R Sbjct: 344 YGTIEYKKLYSELFEDKLIKKNIKLEKEKQQLISQRKYLDEKEKNLFAAYQNHLQNNRSS 403 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE 334 ++ L+ + + K + E I E LL ++ +KR Sbjct: 404 KETLNKLRVLLNINSQKRKVKNEEIKIVAEEYDNQIKKMESENVSSLLKQIEGKRNKRAT 463 Query: 335 TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDR 394 + N + I + ++D D + E+ ++ + +A + + Sbjct: 464 LMAVNPFNDQIEILQEKKLDALADIKIQIAELDDELKQIQEEVEQAQKDYQNAKEKKNEV 523 Query: 395 YDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIR 454 L + L++ + + ++ ++ KL++I+ D+L + I+ Sbjct: 524 KFL-------MKQHFLQQLSKEVNEKNPKSLVWIVVKLLNIKEQITYNIFPDYLEEKNIQ 576 Query: 455 SVGEMAENQFRVGLVR-VERAVKERLSLGDLDTLMPQDMI----------NAKPISAAVK 503 + +MA + + + + ++ +L Q M+ N ++A Sbjct: 577 FLIQMANLEIQKNEKQAFMKNMQNSQRFHNLQQNYQQKMMQFQSSGKKQRNNSSLTAFSS 636 Query: 504 EFFGSSQLSQFMDQNNPLSEI 524 + L+ ++ N LS I Sbjct: 637 STSINPSLNTGLESTNKLSYI 657 >UniRef50_A7TFJ4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TFJ4_VANPO Length = 871 Score = 45.2 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 38/328 (11%), Positives = 99/328 (30%), Gaps = 16/328 (4%) Query: 189 DPKDNLFVRIDRRRKLPATIILRA-LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 D ++ + + + + II + + + F V + +NK L Sbjct: 283 DLNSSVSIDLIFKNLISKFIISKDEIEKNSLDFTMELFNFVDQFLSENKDYPIENLCSLL 342 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 + ++ + + ++R + +E++ + + D+ Sbjct: 343 NSLIALNLIYKPSDFHIIDKIFNILNLRLELNPKKEKDTHLIEFLLCIGLNEYIDDKPNF 402 Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 ++++ L +I N+L + + ++ +ND + Sbjct: 403 YYNLIKCCGNFINVINILDNDSSLKIILPILNELCQSNKLDNIIPLNDSNDFNFLRNFLK 462 Query: 368 --------RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 P + + + LF + + L + + N + I + Sbjct: 463 FLNPVLSLNDFDISNPIIELLLKFINQLLFVNINIKHLRNLK--QLNLKIEFILILKNWF 520 Query: 420 LSKDDIIDVMKKLIDIRN-GKGEVDDIDHLGNR--RIRSVGEMAENQFRVGLVRVERAVK 476 ++I + L+ IDHL + ++ E ENQ + + R + Sbjct: 521 SGNPNLIRIFYPLLITNFWKLIRY--IDHLKCKIKNNENITEYCENQLKQLFKYISRCIN 578 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKE 504 + + D + D+I + A Sbjct: 579 DIFNYNDKTDIELIDLIFKLFLQTASIS 606 >UniRef50_B8XTQ5 Putative beta-N-acetylhexosaminidase n=1 Tax=Mycoplasma crocodyli MP145 RepID=B8XTQ5_9MOLU Length = 1580 Score = 43.7 bits (101), Expect = 0.055, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 97/301 (32%), Gaps = 14/301 (4%) Query: 205 PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVE 264 I L + F K+ +N + E R E Sbjct: 1155 SFFIPLEKIGDNNN----SFKGKISNISYENNWTGNNIDELTRLENVRTSYSVEPNTIPS 1210 Query: 265 KGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL--L 322 K + + I +++ I + + ++ + +S ++ L+++L L Sbjct: 1211 KIANLQSNGIDPTKEEIAFQIIERNDLESYIIIRQTLTSKSNAATKFTKDILLNIELDYL 1270 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL--SALVEIYRMMRPGEPPTREA 380 + + + + + +T+ + ++ V+ + + Sbjct: 1271 LLIKNHFIITEQLYSSESVQDYNELVKTIDLTLIKNQKSFDEAVQKVKAFKNKLISNYSV 1330 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG-- 438 +S L D + + + L L++ ++ +++ KL+ +N Sbjct: 1331 LKSKINELITISDSVNYTRETWNNYVSKLDNLLKNSKNELNRSELAELLNKLVPYKNDLV 1390 Query: 439 KGEVDDIDHLGNRRIRSVGEMAEN----QFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 + +VD L ++ I E N F+ + ++E ++E+ L + +IN Sbjct: 1391 ENKVDASKKLNSKSIEFKAEFYTNESVTLFKEMIKKLENKLQEKDHLTVQELYDFNLLIN 1450 Query: 495 A 495 + Sbjct: 1451 S 1451 >UniRef50_UPI0001924A1B PREDICTED: similar to DNA-dependent RNA polymerase II RPB140 n=1 Tax=Hydra magnipapillata RepID=UPI0001924A1B Length = 332 Score = 43.3 bits (100), Expect = 0.071, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 3/97 (3%) Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 E + D++ KL+ + + VD+ D +R+ ++ E+ E Sbjct: 83 ESPNTPYREKACYLEDMINKLLKVELSRAPVDNRDAYTKKRVDNIRELFEEIMVQQYKNN 142 Query: 472 ERAVKERLSL---GDLDTLMPQDMINAKPISAAVKEF 505 ++ + + D P ++I+ + + F Sbjct: 143 MNECSKQFTARMGDNSDAAEPYNVIHQFKAATFEQGF 179 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Ta... 1379 0.0 UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 T... 1359 0.0 UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 T... 1346 0.0 UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Ta... 1341 0.0 UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Ta... 1334 0.0 UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Ta... 1332 0.0 UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 T... 1329 0.0 UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Ta... 1281 0.0 UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulf... 1261 0.0 UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria Re... 1260 0.0 UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 T... 1240 0.0 UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926... 1173 0.0 UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189... 1151 0.0 UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Ta... 1137 0.0 UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella ... 1105 0.0 UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax... 1103 0.0 UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria Re... 1095 0.0 UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Ta... 1089 0.0 UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Ta... 1087 0.0 UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Ta... 1086 0.0 UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Ta... 1074 0.0 UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus C... 1058 0.0 UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax... 1027 0.0 UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 T... 1022 0.0 UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria Rep... 1006 0.0 UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Ta... 956 0.0 UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria R... 949 0.0 UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Ta... 911 0.0 UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira ... 865 0.0 UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=... 858 0.0 UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 T... 856 0.0 UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus T... 847 0.0 UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Ta... 847 0.0 UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 T... 844 0.0 UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria Rep... 830 0.0 UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haem... 823 0.0 UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Ta... 813 0.0 UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 T... 794 0.0 UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcu... 792 0.0 UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Ta... 787 0.0 UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Ta... 787 0.0 UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax... 785 0.0 UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Ta... 772 0.0 UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacter... 765 0.0 UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomac... 765 0.0 UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculu... 761 0.0 UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax... 752 0.0 UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Ta... 752 0.0 UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA po... 749 0.0 UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Ta... 747 0.0 UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 T... 746 0.0 UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 T... 739 0.0 UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax... 735 0.0 UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Ta... 734 0.0 UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Ta... 713 0.0 UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax... 707 0.0 UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax... 703 0.0 UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax... 702 0.0 UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax... 702 0.0 UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Ta... 692 0.0 UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax... 692 0.0 UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax... 683 0.0 UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Ta... 679 0.0 UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax... 674 0.0 UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacter... 665 0.0 UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Ta... 662 0.0 UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax... 658 0.0 UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 656 0.0 UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 T... 654 0.0 UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota ... 649 0.0 UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas ... 649 0.0 UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax... 645 0.0 UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 644 0.0 UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Ta... 638 0.0 UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax... 636 e-180 UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax... 632 e-179 UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis sol... 628 e-178 UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax... 626 e-177 UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=45... 610 e-172 UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular o... 608 e-172 UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 606 e-171 UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 602 e-170 UniRef50_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=2... 601 e-170 UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplant... 601 e-170 UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata Re... 593 e-167 UniRef50_P08266 DNA-directed RNA polymerase II subunit RPB2 n=26... 586 e-165 UniRef50_B7FVG3 DNA-directed RNA polymerase n=5 Tax=Eukaryota Re... 585 e-165 UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=12... 585 e-165 UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota ... 582 e-164 UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=A... 577 e-162 UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus H... 576 e-162 UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylu... 569 e-160 UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota R... 567 e-159 UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax... 566 e-159 UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax... 559 e-157 UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 556 e-156 UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeot... 555 e-156 UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 ... 555 e-156 UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 T... 554 e-156 UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 552 e-155 UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota R... 550 e-154 UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 550 e-154 UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putat... 549 e-154 UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus ma... 549 e-154 UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 547 e-153 UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 546 e-153 UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeo... 546 e-153 UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax... 545 e-153 UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 544 e-153 UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae... 543 e-152 UniRef50_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 542 e-152 UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabdit... 537 e-151 UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 536 e-150 UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota R... 534 e-150 UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=A... 532 e-149 UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyc... 529 e-148 UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomyce... 527 e-147 UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia inte... 525 e-147 UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax... 524 e-147 UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 ... 523 e-146 UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata Re... 523 e-146 UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 520 e-145 UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitoz... 517 e-145 UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora ... 517 e-144 UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporid... 516 e-144 UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax... 514 e-144 UniRef50_A8P4S3 DNA-directed RNA polymerase III subunit 127.6 kD... 510 e-142 UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermob... 507 e-141 UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus K... 504 e-140 UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorell... 503 e-140 UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota Re... 499 e-139 UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenop... 498 e-139 UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax... 497 e-138 UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 495 e-138 UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomat... 495 e-138 UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 491 e-136 UniRef50_B2W234 DNA-directed RNA polymerase n=1 Tax=Pyrenophora ... 483 e-134 UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax a... 483 e-134 UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q... 482 e-134 UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit ... 482 e-134 UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-termi... 482 e-134 UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Ac... 482 e-134 UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-termi... 481 e-134 UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-termi... 480 e-133 UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (... 473 e-131 UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 472 e-131 UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 469 e-130 UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 468 e-130 UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta ... 466 e-129 UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenop... 460 e-127 UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella... 460 e-127 UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Ta... 453 e-125 UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 452 e-125 UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix s... 438 e-121 UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophy... 434 e-119 UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative ... 434 e-119 UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit ... 420 e-115 UniRef50_Q2I5U8 DNA-directed RNA polymerase (Fragment) n=7 Tax=F... 419 e-115 UniRef50_Q5RM00 DNA-directed RNA polymerase (Fragment) n=26 Tax=... 416 e-114 UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=... 411 e-112 UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 ... 405 e-111 UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 ... 404 e-110 UniRef50_A5H2B2 DNA-directed RNA polymerase (Fragment) n=3 Tax=L... 403 e-110 UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas... 399 e-109 UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora l... 393 e-107 UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=L... 390 e-106 UniRef50_Q0CKF7 DNA-directed RNA polymerase I polypeptide 2 n=3 ... 388 e-105 UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophy... 387 e-105 UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit R... 383 e-104 UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpu... 379 e-103 UniRef50_C5LHP3 DNA-directed RNA polymerase n=2 Tax=Perkinsus ma... 377 e-102 UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides ... 371 e-101 UniRef50_Q17U53 DNA-directed RNA polymerase, putative n=1 Tax=So... 370 e-100 UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain ... 369 e-100 UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 369 e-100 UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 T... 366 2e-99 UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA PO... 366 4e-99 UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-termi... 366 5e-99 UniRef50_A7SSE2 DNA-directed RNA polymerase n=1 Tax=Nematostella... 364 2e-98 UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga bre... 358 7e-97 UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=F... 357 1e-96 UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 356 3e-96 UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta ... 356 4e-96 UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa... 354 1e-95 UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carte... 352 6e-95 UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum... 351 8e-95 UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 T... 347 2e-93 UniRef50_C9SKJ8 DNA-directed RNA polymerase n=1 Tax=Verticillium... 346 5e-93 UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium t... 344 2e-92 UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogon... 343 2e-92 UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax... 343 2e-92 UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=... 338 7e-91 UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi... 338 8e-91 UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 338 1e-90 UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas R... 337 2e-90 UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=E... 337 2e-90 UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella s... 337 2e-90 UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=... 332 5e-89 UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular org... 331 1e-88 UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax... 331 2e-88 UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit ... 329 3e-88 UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 329 5e-88 UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepI... 325 9e-87 UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 ... 323 4e-86 UniRef50_B9F8X6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa... 322 5e-86 UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomona... 322 7e-86 UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-termi... 322 7e-86 UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=I... 322 8e-86 UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit ... 321 1e-85 UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota R... 321 2e-85 UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 319 7e-85 UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus... 317 2e-84 UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia ... 315 9e-84 UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa pol... 314 1e-83 UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n... 314 2e-83 UniRef50_A9BK45 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 312 7e-83 UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium R... 311 9e-83 UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium c... 310 3e-82 UniRef50_B9G6G0 DNA-directed RNA polymerase n=5 Tax=Oryza sativa... 310 3e-82 UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 309 7e-82 UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit ... 306 3e-81 UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Ta... 305 9e-81 UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis ... 304 2e-80 UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 298 1e-78 UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 289 4e-76 UniRef50_Q1L6B6 RNA polymerase II second largest subunit (Fragme... 285 9e-75 UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax... 282 6e-74 UniRef50_Q06VE3 RNA polymerase subunit n=3 Tax=Ascovirus RepID=Q... 281 2e-73 UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hyp... 280 3e-73 UniRef50_P42487 DNA-directed RNA polymerase subunit 2 n=7 Tax=Af... 276 4e-72 UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 275 6e-72 UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=S... 274 1e-71 UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-termi... 271 2e-70 UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus Re... 270 2e-70 UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious s... 270 3e-70 UniRef50_Q4ZJA8 DNA-directed RNA polymerase n=3 Tax=Lymphocystiv... 266 4e-69 UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunalie... 262 6e-68 UniRef50_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprino... 261 2e-67 UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella t... 260 2e-67 UniRef50_UPI0000E487B4 PREDICTED: similar to Polymerase (RNA) II... 260 3e-67 UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 ... 259 5e-67 UniRef50_P15352 DNA-directed RNA polymerase subunit B'' n=25 Tax... 257 2e-66 UniRef50_Q4QA33 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 257 2e-66 UniRef50_Q98S72 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 257 2e-66 UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrel... 252 7e-65 UniRef50_D2RIB2 RNA polymerase beta subunit n=1 Tax=Archaeoglobu... 249 8e-64 UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=P... 248 1e-63 UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psych... 246 5e-63 UniRef50_A9TCU8 Predicted protein n=6 Tax=Physcomitrella patens ... 246 6e-63 UniRef50_D2EG08 RNA polymerase Rpb2 domain 6 n=1 Tax=Candidatus ... 241 1e-61 UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax... 241 2e-61 UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomona... 235 1e-59 UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax... 228 2e-57 UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=P... 220 2e-55 UniRef50_Q8TXI6 DNA-directed RNA polymerase second-largest subun... 220 4e-55 UniRef50_P33811 DNA-directed RNA polymerase 132 kDa polypeptide ... 217 3e-54 UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=... 213 5e-53 UniRef50_UPI0001C41F1A DNA-directed RNA polymerase subunit B''''... 209 7e-52 UniRef50_O27123 DNA-directed RNA polymerase subunit B'' n=19 Tax... 208 2e-51 UniRef50_C7DHC6 RNA polymerase beta subunit n=1 Tax=Candidatus M... 207 3e-51 UniRef50_Q3LW79 Second-largest subunit of RNA polymerase III n=1... 204 2e-50 UniRef50_A7AXE5 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 198 1e-48 UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular org... 194 2e-47 UniRef50_C0GNU6 RNA polymerase Rpb2 domain 6 n=1 Tax=Desulfonatr... 191 2e-46 UniRef50_Q0PPY8 RNA polymerase II second largest subunit (Fragme... 188 9e-46 UniRef50_Q74NB5 NEQ173 n=1 Tax=Nanoarchaeum equitans RepID=Q74NB... 187 3e-45 UniRef50_D2EG09 RNA polymerase beta subunit n=1 Tax=Candidatus P... 186 5e-45 UniRef50_D1GLP0 RNA polymerase beta subunit (Fragment) n=1 Tax=N... 182 7e-44 UniRef50_Q06SF4 DNA-directed RNA polymerase subunit beta C-termi... 180 5e-43 UniRef50_C6H0E8 RNA polymerase subunit B (Fragment) n=1 Tax=Acin... 179 7e-43 UniRef50_Q5W438 RNA polymerase B subunit (Fragment) n=4 Tax=Cyan... 179 9e-43 UniRef50_B7RK98 DNA-directed RNA polymerase, beta subunit n=1 Ta... 178 1e-42 UniRef50_A6BAY3 DNA-directed RNA polymerase beta chain (Fragment... 168 2e-39 UniRef50_A9SMS1 Predicted protein (Fragment) n=1 Tax=Physcomitre... 165 8e-39 UniRef50_B9HB57 Predicted protein n=1 Tax=Populus trichocarpa Re... 162 8e-38 UniRef50_Q9EMY3 AMV066 n=2 Tax=Entomopoxvirinae RepID=Q9EMY3_AMEPV 159 6e-37 UniRef50_C5LIK5 DNA-directed RNA polymerase III subunit, putativ... 158 1e-36 UniRef50_Q23U98 DNA-directed RNA polymerase, beta subunit family... 157 2e-36 UniRef50_UPI0001924FAA PREDICTED: similar to DNA-directed RNA po... 157 3e-36 UniRef50_Q1KS34 DNA-directed RNA polymerase (Fragment) n=1 Tax=C... 153 4e-35 UniRef50_D1INW9 Whole genome shotgun sequence of line PN40024, s... 153 6e-35 UniRef50_C1TQA8 DNA-directed RNA polymerase, beta subunit/140 kD... 148 2e-33 UniRef50_Q2Z143 Putative uncharacterized protein n=1 Tax=Pseudom... 142 8e-32 UniRef50_A5AMN9 DNA-directed RNA polymerase n=1 Tax=Vitis vinife... 138 2e-30 UniRef50_P41187 DNA-directed RNA polymerase subunit beta (Fragme... 130 4e-28 UniRef50_UPI0000E4A667 PREDICTED: similar to Polymerase (RNA) II... 123 6e-26 UniRef50_P05472 Probable DNA-directed RNA polymerase n=4 Tax=Sac... 119 1e-24 UniRef50_A9U5J3 Predicted protein n=2 Tax=Physcomitrella patens ... 119 1e-24 UniRef50_Q48975 DNA-directed RNA polymerase (Beta) (Fragment) n=... 119 1e-24 UniRef50_UPI0001926473 PREDICTED: similar to DNA-directed RNA po... 114 2e-23 UniRef50_A9SWU4 Predicted protein n=1 Tax=Physcomitrella patens ... 111 2e-22 UniRef50_B3RKF6 Putative uncharacterized protein n=1 Tax=Trichop... 89 1e-15 UniRef50_UPI0001742D24 DNA-directed RNA polymerase beta chain n=... 88 2e-15 UniRef50_D2J6W7 Putative uncharacterized protein n=1 Tax=Staphyl... 86 6e-15 UniRef50_UPI0001924FA9 PREDICTED: similar to DNA-directed RNA po... 86 1e-14 UniRef50_B9RDB2 DNA-directed RNA polymerase beta chain, putative... 86 1e-14 UniRef50_P90631 RNA polymerase II second largest subunit (Fragme... 83 7e-14 UniRef50_C0SZK4 DNA-directed RNA polymerase subunit beta (Fragme... 83 8e-14 UniRef50_C5Y5J9 Putative uncharacterized protein Sb05g004163 (Fr... 81 2e-13 UniRef50_D1I1U7 Whole genome shotgun sequence of line PN40024, s... 74 4e-11 UniRef50_C7AA72 RpoB (Fragment) n=36 Tax=Alphaproteobacteria Rep... 71 4e-10 UniRef50_Q36704 (S1 sensitive region) (Fragment) n=4 Tax=Embryop... 69 2e-09 UniRef50_Q7SXI3 Zgc:66298 protein n=2 Tax=Danio rerio RepID=Q7SX... 63 1e-07 UniRef50_UPI00016982A9 DNA-directed RNA polymerase subunit beta ... 62 1e-07 UniRef50_Q8KRK0 RpoB protein (Fragment) n=1 Tax=Pediococcus pent... 60 6e-07 UniRef50_B5Z8J4 DNA-directed RNA polymerase, beta subunit n=1 Ta... 52 2e-04 UniRef50_B9U5W9 RNA polymerase beta subunit (Fragment) n=21 Tax=... 50 5e-04 Sequences not found previously or not previously below threshold: UniRef50_Q23DP4 Myosin n=2 Tax=Tetrahymena thermophila RepID=Q23... 50 6e-04 UniRef50_Q9XDQ2 ORF12 protein n=2 Tax=cellular organisms RepID=Q... 46 0.007 UniRef50_B1BVG8 Putative uncharacterized protein n=1 Tax=Clostri... 46 0.015 UniRef50_A8I790 Predicted protein n=1 Tax=Chlamydomonas reinhard... 45 0.020 UniRef50_Q8I348 Selenide water dikinase, putative n=2 Tax=Plasmo... 45 0.021 UniRef50_UPI0001924A1B PREDICTED: similar to DNA-dependent RNA p... 45 0.022 UniRef50_UPI00006CCB8E hypothetical protein TTHERM_00437410 n=1 ... 45 0.022 UniRef50_Q7RF77 Putative uncharacterized protein PY04831 n=6 Tax... 44 0.044 UniRef50_Q01GR5 RPB2_LYCES DNA-directed RNA polymerase II 135 kD... 43 0.059 UniRef50_Q2ST96 Membrane protein, putative n=3 Tax=Mycoplasma my... 43 0.070 UniRef50_Q8IIT8 Conserved Plasmodium protein n=1 Tax=Plasmodium ... 43 0.086 UniRef50_D1YZ03 Putative uncharacterized protein n=1 Tax=Methano... 43 0.094 UniRef50_A2GAC2 Putative uncharacterized protein (Fragment) n=1 ... 43 0.095 >UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Tax=cellular organisms RepID=RPOB_NOVAD Length = 1392 Score = 1379 bits (3569), Expect = 0.0, Method: Composition-based stats. Identities = 780/1360 (57%), Positives = 1011/1360 (74%), Gaps = 29/1360 (2%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE--GQYGLEAAFRSVFPIQSYSGN 65 KKRIRK FG +V+ +P L+ +Q +S+++F+ DP GLE RSVFPIQ ++G Sbjct: 17 KKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDPATGYVSGLEKTLRSVFPIQDFAGT 76 Query: 66 SELQYVS---YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIY--EREAPEGTVKDIKEQ 120 + L Y L P +DV EC+ RG+TY+AP++V L+L + + E ++ DIKEQ Sbjct: 77 ASLDIKEKDGYVLESPKYDVNECRQRGITYAAPMKVTLKLATFEVDAETETKSLIDIKEQ 136 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG+IPLMT+NGTF INGTERVIVSQ+HRSPGV FD D+GKTHSSGK L+ AR+IPYR Sbjct: 137 DVYMGDIPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAARVIPYR 196 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 GSWLDFEFD KD + VRIDR+RKLP T +L AL E IL F++ V + + ++ Sbjct: 197 GSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLGDEDILHHFYDTVTWARAEGGWKVP 256 Query: 241 LVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 V E+ RG +FDI +G+V G++I+ R + KD ++ + +P E I G+ A Sbjct: 257 FVLEQWRGSKPAFDIVDAKSGEVIFPAGQKISPRAANKAAKDGLEALLIPTEEIFGRYAA 316 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 +D IDESTG + A E+S + L L ++G ++ L + + GP+I TL+ D D Sbjct: 317 RDLIDESTGRIWIEAGDEVSPENLDLLDKAGIDNLDLLDIDHISTGPWIRNTLKADKAPD 376 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R AL +IYR+MRPGEPPTRE AE+LF+ LFF DRYDLSAVGR+K N L + + Sbjct: 377 RDHALADIYRVMRPGEPPTRETAEALFDGLFFDGDRYDLSAVGRVKLNMRLGLDCPDTVT 436 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 L DDI+ V+K+L+++++GKGEVDDID+LGNRR+RSVGE+ ENQ+RVGL+R+ERAVKER Sbjct: 437 TLRTDDILAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKER 496 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S D+ T+MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGL Sbjct: 497 MSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGL 556 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 TRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLS +A+ N+YGF+ETPYRKV DG Sbjct: 557 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRKVVDGK 616 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT ++ YLSA+EE + +AQA++ L +G FVE+LV+ R GE + RD V MDVS + Sbjct: 617 VTKDVIYLSAMEEQKHTVAQASAELTADGSFVEELVSARQNGEFVMAPRDTVTLMDVSPK 676 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP ++AD P VGTGME VA DSG A Sbjct: 677 QLVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKADAPFVGTGMEETVARDSGAAISA 736 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 R GVV VDA+RIVI+ + ++ PG++G+DIY L K+ RSNQ+TCINQ P V +G+ +E Sbjct: 737 LRSGVVDQVDATRIVIRAS-GDIEPGQSGVDIYRLQKFERSNQSTCINQRPLVKVGDLIE 795 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+V+ED FT+IHI+E Sbjct: 796 KGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKEDVFTSIHIEEFEV 855 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDILVGK+TPKGE+ +TPE Sbjct: 856 MARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILVGKITPKGESPMTPE 915 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 EKLLRAIFGEKASDV+D+SLR+P GV+GT++DV+VF R G+E D R I+ ++++ K Sbjct: 916 EKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIEIDDRTRAIQNEEIERLAK 975 Query: 959 DLSEELQILEAGLFSRIRAVLVAG-------------GVEAEKLDKLPRDRWLELGLTDE 1005 D +E IL F+R++ +L+ ++ + L + R W + + D+ Sbjct: 976 DREDERAILNRATFNRLKDMLLGQVAAAAPKGIKKGVEIDEQVLADVERHEWWKFAVADD 1035 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 +Q QLE + QYD ++K E ++ K+ +GD+LAPGVLK+VKV++AVKR++QPGDK Sbjct: 1036 ARQQQLEAVKAQYDTAVKAIQEKFEDRKEKLERGDELAPGVLKMVKVFVAVKRKLQPGDK 1095 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 MAGRHGNKG+IS+I P EDMP+ E+GTPVD VLNPLGVPSRMN+GQI ETHLG AA+G+G Sbjct: 1096 MAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLGWAARGLG 1155 Query: 1126 DKINAMLKQQQEVAKL------REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 +I L +E E ++ ++ +DE+++ A+++R G Sbjct: 1156 KRIGEALDAWREANPNPEAGQPPEAVRELLKEIYGDNYAAEIDARNDEQIIDFAQSVRLG 1215 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 +P+ +PVFDGA E ++ ++L+L L SGQ+ L+DGRTG+ F+R VTVG Y+LKL+HLV Sbjct: 1216 VPMGSPVFDGAVEKDVTDMLRLAGLDESGQVTLFDGRTGDAFDRKVTVGMKYVLKLHHLV 1275 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAYTLQEMLTVKSDDV Sbjct: 1276 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVV 1335 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1336 GRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1375 >UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 Tax=Bacteria RepID=RPOB_METPP Length = 1375 Score = 1359 bits (3517), Expect = 0.0, Method: Composition-based stats. Identities = 873/1370 (63%), Positives = 1066/1370 (77%), Gaps = 33/1370 (2%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVF 57 YSYTE+KRIRK FGKR VL VPYLL++Q DS+ F+++D Q GL+AAF S F Sbjct: 6 PYSYTERKRIRKSFGKRENVLGVPYLLTMQKDSYVAFLQKDVPPQKRKPEGLQAAFLSAF 65 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE---GTV 114 PI S++G E++Y+ + + +P FD +ECQ RG+TY+A +R KL+++IY+RE V Sbjct: 66 PIVSHNGFVEMKYIEFNMAKPAFDTRECQQRGLTYAAAVRAKLQMIIYDRETSTSQSKVV 125 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 K+IKEQEVYMGE+PLMTD G+F++NGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++A Sbjct: 126 KEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 185 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 RIIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ EQIL FF F + D Sbjct: 186 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILANFFVFDNFRLMD 245 Query: 235 NKLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 + QME V +RLRGE A FD+ + G V VEK +RITARH R LE I VP +++ Sbjct: 246 SGAQMEFVADRLRGEIARFDLTDKAGAVIVEKDKRITARHTRALEASGTSFISVPEDFLV 305 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G+V+AK+ +D TGE+I AN EL+ LL KL +G K I+ L+TN+LD G YIS+TL Sbjct: 306 GRVLAKNMVDADTGEIIAKANDELTDSLLKKLRTAGIKDIQCLYTNELDMGAYISQTLAS 365 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 D T D L+A V IYRMMRPGEPPT +A ++LF LF+SED YDLS VGRMKFN + R+ Sbjct: 366 DETADELAARVAIYRMMRPGEPPTEDAVQALFNRLFYSEDTYDLSRVGRMKFNARVGRDT 425 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 EG +L+ DDI+DV+K L+++RNG+GEVDDIDHLGNRR+R VGE+AENQ+R GL R+E+ Sbjct: 426 AEGRMVLANDDILDVVKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLARIEK 485 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 AVKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 486 AVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSAL 545 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL++YAQ NEYGFLETPYR+ Sbjct: 546 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETPYRR 605 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V D VTD+I YLSAIEEG YVIAQAN+ LD++G +++LV+ R GES L S +++ YM Sbjct: 606 VIDSKVTDQIDYLSAIEEGKYVIAQANAGLDKDGKLIDELVSARESGESVLTSPERIQYM 665 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DV+ Q+VSV ASL+PFLEHDDANRALMGANMQRQAVP LR +K VGTG+ER AVDSG Sbjct: 666 DVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGVERVSAVDSG 725 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 AKRGGVV Y+D +RIVI+VN+ E GE G+DIYNL KY RSNQNT I+Q P V Sbjct: 726 TVVTAKRGGVVDYIDTNRIVIRVNDAETVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVQR 785 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V GDV+ADG STD+GELALGQNM VAFMPWNGYNFEDSIL+SERVV +DR+T+IHI Sbjct: 786 GDQVGAGDVIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRYTSIHI 845 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +EL ++RDTKLG EEIT DIPN+ E L +LDESGIVYIGAEV GD+LVGKVTPKGET Sbjct: 846 EELVVMARDTKLGSEEITRDIPNLSEQQLGRLDESGIVYIGAEVNPGDVLVGKVTPKGET 905 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 LTPEEKLLRAIFGEKASDVKD+SLRV G +GTVIDVQVFTR+G+++DKRA +I + +L Sbjct: 906 TLTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIQRDKRAQQIIDDEL 965 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAG---GVEAEKLDKLPRD----------RWLEL 1000 K+ + DL+++L+I+EA F RI +L G + P D W ++ Sbjct: 966 KRFRLDLNDQLRIVEADAFDRIEKLLAGKTANGGPNKLAKGTPIDKAYLASVDKYHWFDI 1025 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 D++ NQLE + ++ +H F+ E KR+K+TQGD+L GVLK+VKVYLAVKRR+ Sbjct: 1026 RPADDDIANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRL 1085 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 QPGDKMAGRHGNKGV+SKI P+EDMPY +GTP DIVLNPLGVPSRMN+GQ+LE HLG A Sbjct: 1086 QPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHLGWA 1145 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 AKGIG +I +L+Q+ ++A +R+F+ Y+ + ++ SD E+ +A NL +G+ Sbjct: 1146 AKGIGQRIGDLLQQEAKIADVRKFLDELYNKSGGKSEGLNG--LSDAEITEMATNLAQGV 1203 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPT----------SGQIRLYDGRTGEQFERPVTVGYM 1230 P ATPVFDGA E EI+ ++ L Q L+DGRTG+ FERPVTVGYM Sbjct: 1204 PFATPVFDGATEEEIRAMMHLAYPDEIAAAKGLNATRTQATLHDGRTGDAFERPVTVGYM 1263 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 ++LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEM Sbjct: 1264 HVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEM 1323 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LTVKSDDVNGRTK+Y++IV G H +E GMPESFNVL+KEIRSLGI+IELE Sbjct: 1324 LTVKSDDVNGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGIDIELE 1373 >UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 Tax=Bacteria RepID=RPOB_MYXXD Length = 1408 Score = 1346 bits (3483), Expect = 0.0, Method: Composition-based stats. Identities = 778/1381 (56%), Positives = 1016/1381 (73%), Gaps = 46/1381 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSV 56 M R+RK F K +++D+P L++IQ S++KF++ D GL+ F+SV Sbjct: 1 MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 FPI+ ++ S L++VSY L P +DV EC RG+TYSAP++V +RLV+++++ G ++ Sbjct: 61 FPIRDFNETSSLEFVSYHLERPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +D+KEQEVY GEIPLMT NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNA Sbjct: 121 RDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY--------------TTEQI 220 RIIPYRGSW+DFEFD KD L+VRIDRRRKLPAT+++RAL +TE+I Sbjct: 181 RIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEI 240 Query: 221 LDLFFEKVIFEI-RDNKLQMELVPERLRGETASFDIE-ANGKVYVEKGRRITARHIRQLE 278 L+ ++ + + + + E L G+ A+ DI+ G++ V+K R+ T I++LE Sbjct: 241 LNYYYATETIYLHSAEEFEKSVELELLPGQRATRDIKAKTGELIVKKNRKFTRAAIKKLE 300 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 +K + + + + KV A D ++E+ G ++ N E++ + + +L + G K + LF Sbjct: 301 AAKMKTLPIDADELFTKVSAYDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFI 360 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 ++L+ GPY+ ETL +D +++EIYR +RPG+PPT E A +LF NLFF+ +RYDLS Sbjct: 361 DNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLS 420 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 VGR+K N EE IL+K DI++V++ LID++NGKG +DDIDHLGNRR+R+VGE Sbjct: 421 KVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE 480 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + ENQ+R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFMDQ Sbjct: 481 LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQT 540 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI SLS Y Sbjct: 541 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTY 600 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 A+ NE+GF+ETPYRKV GVVT+++ + SA+EE + IAQAN+ D++G F LV+ R Sbjct: 601 ARVNEFGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQANAETDKKGKFANALVSSRR 660 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 GE + VD MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP LR P Sbjct: 661 GGEFVQARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP 720 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLTKYT 757 LVGTG+E VA DSGVT VA+R G+V+ VDA RIV+K + + + +DIYNL KY Sbjct: 721 LVGTGIESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQ 780 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 RSNQNTC+NQ P +S G+ V +GDV+ADGP+T+ GELALGQN+ VAFMPW GYNFEDSIL Sbjct: 781 RSNQNTCLNQKPIISKGDRVMKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSIL 840 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 +SER++++D FT+IHI+E C++RDTKLG EEIT DIPNVGE AL LDESGI+ IGAEV Sbjct: 841 ISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEV 900 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GD+LVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GV GTVI+ +VF+R Sbjct: 901 KPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK 960 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK------ 991 GVEKD+RA +IE M+ + KD ++E+++L+ F RIR ++ V+ + +D Sbjct: 961 GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILL 1020 Query: 992 -------------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 +P W E+ + D ++L + +E K + K +I + Sbjct: 1021 KKGDILDDELLSTVPYKYWGEISVGDP-LDSRLRDILRNLEETKEAVKLAFGEKIARIKK 1079 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 GD+L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S+I P EDMPY E+G PVDIVL Sbjct: 1080 GDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVL 1139 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMNIGQILETHLG AAKG G+ + ++ ++E ++ Y +D Sbjct: 1140 NPLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIY---SDPAFG 1196 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 L DEE+ +L ++G+ +ATPVFDGA+E EI LL G LP SGQ+ L+DGRTG Sbjct: 1197 EFLDKLDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTG 1256 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWA+ Sbjct: 1257 EPFDQNVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAM 1316 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 EAYGAAYTLQE LTVKSDDV GRT+MY+ IV G++ +E G+PESFNVLLKE++SL +++E Sbjct: 1317 EAYGAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVE 1376 Query: 1339 L 1339 L Sbjct: 1377 L 1377 >UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Tax=Bacteria RepID=RPOB_ANAD2 Length = 1422 Score = 1341 bits (3469), Expect = 0.0, Method: Composition-based stats. Identities = 783/1388 (56%), Positives = 1028/1388 (74%), Gaps = 52/1388 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSV 56 M + RIR++FGK ++ ++P L++IQ S+ KF++ D GL+ F+SV Sbjct: 1 MATTIQNNFRIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG--TV 114 FPI+ ++ S L++VSY L +P +DV EC RG+TYSAP++V +RLV+++++ G ++ Sbjct: 61 FPIKDFNETSSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +D+KEQEVY GEIPLMT+NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNA Sbjct: 121 RDVKEQEVYFGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY--------------TTEQI 220 RIIPYRGSW+DFEFD KD L+VRIDRRRKLPAT++LRAL + E+I Sbjct: 181 RIIPYRGSWIDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEI 240 Query: 221 LDLFFEKVIFEIR-DNKLQMELVPERLRGETASFDIE--ANGKVYVEKGRRITARHIRQL 277 L +++ I K + +LVP+ L+G+ A+ DI + +V V+K R+ T I++L Sbjct: 241 LKYYYDTETIRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKL 300 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 +K + V E + K+ A+D +DE+TGE++ N E++ + +L + + LF Sbjct: 301 VAAKMKSLPVEPEEVYTKISAEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLF 360 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 ++L+ P + +TL D + A++EIYR +RPG+PPT E A +LF NLFF+ +RYDL Sbjct: 361 IDNLNILPALRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDL 420 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRS 455 S VGR+K N EE + +L+K DI++V++ LID++NGK +VDDIDHLGNRR+R+ Sbjct: 421 SKVGRLKLNYKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRA 480 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 VGE+ ENQ+R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFM Sbjct: 481 VGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFM 540 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 DQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLI SL Sbjct: 541 DQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASL 600 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 S YA+ NEYGF+ETPYRKV G VTDE+ + SA+EE ++IAQAN+ +D++G+F E V Sbjct: 601 STYARVNEYGFVETPYRKVEKGRVTDEVTFYSALEEEKHIIAQANAPVDKKGNFTEAKVW 660 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 CR +GE D+VD MDVS Q+VSV ASL+PFLE+DDANRALMG+NMQRQAVP LR Sbjct: 661 CRKEGEYIYVRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRT 720 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLT 754 PLVGTG+E VA DSGVT VAKR GVVQ VDASRIV+K + +DIYNL Sbjct: 721 QAPLVGTGIEAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLI 780 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 KY RSNQNTCINQ P V GE V++GDV+ADGP+T++GELALGQN+ VAFMPW GYNFED Sbjct: 781 KYQRSNQNTCINQKPIVKPGERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFED 840 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 SIL+SER+++ED FT++HI+E CV+RDTKLG EEIT DIPNVGE AL LDESGI+ IG Sbjct: 841 SILLSERLIKEDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIG 900 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 AEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GVSGTVI+ +VF Sbjct: 901 AEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVF 960 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK--- 991 +R GVEKD+RA IEEM+ + KD ++E++I++ F +IR +L+ V A +D Sbjct: 961 SRKGVEKDERAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGE 1020 Query: 992 ----------------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 +P+ W E+ + + Q+ ++ E ++E K + K + Sbjct: 1021 QLLKKGDVLDDALLDTVPQRYWGEIAVA-GDVQDLARKIIENFEEQKELVKLLFGEKIGR 1079 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 + +GD+L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S++ P ED+PY E+GTPVD Sbjct: 1080 LKKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVD 1139 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA-- 1153 IVLNPLGVPSRMN+GQILETHLG AA+ +G ++ M++++ LR+ ++ A+ Sbjct: 1140 IVLNPLGVPSRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGG 1199 Query: 1154 --DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 R + ++E+ +L + LR+GM +ATPVFDGA+E E+K L++ G + Q Sbjct: 1200 PVGERLAALIEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEG--SATLQSI 1257 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 L+DGRTGE F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR G Sbjct: 1258 LFDGRTGEPFDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLG 1317 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EMEVWA+EAYGAAY+LQE LTVKSDDV GRT+MY+ IV G + +E G+PESFNVL+KE++ Sbjct: 1318 EMEVWAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQ 1377 Query: 1332 SLGINIEL 1339 SL +++EL Sbjct: 1378 SLALDVEL 1385 >UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Tax=Neisseriaceae RepID=RPOB_NEIG1 Length = 1392 Score = 1334 bits (3453), Expect = 0.0, Method: Composition-based stats. Identities = 888/1393 (63%), Positives = 1092/1393 (78%), Gaps = 56/1393 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ----DPEGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR VL+VP+LL+ Q+DS+ KF++ D GL+AAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + L++V Y LGEP+FD+ ECQ+RG+TY+APLR ++RLVI ++EA + TVK+ Sbjct: 61 FPIVSHNGYARLEFVYYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKE 120 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 ++E EVYMGEIPLMT +G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 121 VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 180 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDFEFDPKD L+ RIDRRRK+P TI+L+AL Y EQILD+F++K F + N Sbjct: 181 IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSNG 240 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +Q +LV RL+GETA DI + G V V KG+RITA++IR + + ++V E + GK Sbjct: 241 VQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITAKNIRDITNAGLTRLDVEQESLLGK 300 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A D ID TGE++ +AN E++ +LLAK +G K I TL+ N+LD G YIS TLR D Sbjct: 301 ALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTDE 360 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE-- 413 T R +A V IYRMMRPGEPPT EA E LF LFFSED YDLS VGRMKFN ++ Sbjct: 361 TAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQKLS 420 Query: 414 --------------------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 +G +LS +DI+ + L+++RNG GEVDDIDHLGNRR+ Sbjct: 421 EAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV 480 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 RSVGE+ ENQFR GL RVERAVKERL+ + + LMP D+INAKP+SAA+KEFFGSSQLSQ Sbjct: 481 RSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQ 540 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 FMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN Sbjct: 541 FMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 600 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 SLSVYA+TN+YGFLETPYR+V DG VT+EI YLSAIEEG YVIAQAN++LD +G+ + DL Sbjct: 601 SLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDL 660 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 VTCR KGE+ + + D+V YMDV+T QVVSV ASLIPFLEHDDANRALMGANMQRQAVP L Sbjct: 661 VTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL 720 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 R +KP+VGTG+ER+VAVDS VA+RGGVV+YVDA+R+VI+V++DE GE G+DIYNL Sbjct: 721 RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNL 780 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 K+TRSNQ+T INQ P V G+ ++RGD++ADG STDLGELALGQNM +AFMPWNGYN+E Sbjct: 781 VKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYE 840 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 DSIL+SE+V +DR+T+IHI+EL V+RDTKLG E+IT DIPN+ E ++LDESGIVYI Sbjct: 841 DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYI 900 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 GAEV GD+LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLR+P G+SGTVIDVQV Sbjct: 901 GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV 960 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG---------- 983 FTR+G+++DKRA I + +LK+ + DL+++L+I + F RI ++V Sbjct: 961 FTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLTK 1020 Query: 984 ---VEAEKLDKLPRDR-WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + E L LP W ++ LTDE+ QLE + + + E ++ E K++K+TQG Sbjct: 1021 GSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKKLTQG 1080 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L PGV K+VKV++A+KRR+Q GDKMAGRHGNKGV+S+I P+EDMPY +G PVDIVLN Sbjct: 1081 DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN 1140 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQILE HLG AAKGIG++I+ MLK++++ +LREF+ + Y +K Sbjct: 1141 PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKERRKAGELREFLNKLY---NGSGKKE 1197 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG----------- 1208 DL + +DEE++ LA NLRKG A+PVFDGAKE+EI+E+L L Sbjct: 1198 DLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGFNDSK 1257 Query: 1209 -QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 QI LYDGR+GE F+R VTVG M+ LKL+HLVD+KMHARSTG YSLVTQQPLGGKAQFGG Sbjct: 1258 TQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGG 1317 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLL 1327 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY+NIV G H+++ GMPESFNVL+ Sbjct: 1318 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLV 1377 Query: 1328 KEIRSLGINIELE 1340 KEIRSLG++I+LE Sbjct: 1378 KEIRSLGLDIDLE 1390 >UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Tax=Proteobacteria RepID=RPOB_DESDA Length = 1378 Score = 1332 bits (3446), Expect = 0.0, Method: Composition-based stats. Identities = 726/1358 (53%), Positives = 947/1358 (69%), Gaps = 32/1358 (2%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE-----GQYGLEAAFRSVFPIQSYSGNSE 67 K FGK L +P+LL++Q+DS++KF+++ GLE F +VFPI+ ++ + Sbjct: 6 KQFGKIKISLPIPHLLNLQIDSYEKFLQEGVPEAERRPDEGLEGVFHTVFPIEDFNKTAS 65 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA--PEGTVKDIKEQEVYMG 125 L++VSY +GEP +D EC +G+TY AP+R+K+RLV+Y+ + T++DIKEQ++Y G Sbjct: 66 LEFVSYEIGEPKYDQAECISKGLTYEAPMRIKVRLVVYDADEASGNRTIRDIKEQDIYFG 125 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 +PLMT+ GTF+INGTERVIV+QL RSPG+ F+ D GKTH+S KVLY+ R+IP RGSWLD Sbjct: 126 TLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMRGSWLD 185 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD-NKLQMELVPE 244 F+FD KD L+VRIDRRRK+PATI+ +A+ + EQILD F+ + + + + N + E+ E Sbjct: 186 FDFDHKDILYVRIDRRRKMPATILFKAMGMSKEQILDYFYTQETYRLEERNTIFWEVRKE 245 Query: 245 RLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 R + A DI ++ G V V+ G+ IT R R + + ++ IE+ + + G +A D D Sbjct: 246 LYRKDNAYADIVDSEGNVIVKAGKPITKRSWRLICEAGIEAIEMRPDTLDGMFLAGDVAD 305 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 TGEL+ A E++ LL ++ +G R+ L T D I +TL +D D+L A Sbjct: 306 PKTGELLAEAADEITPGLLDRMRDAGINRVSVLHTKGNDTSSSIRDTLMLDRIPDQLKAQ 365 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 EIYR +RP PPT E A S F+NLF + D YDLS VGR K N+ L +E L+ + Sbjct: 366 EEIYRRLRPSSPPTAEIAASFFDNLFRNPDYYDLSPVGRYKLNQRLSLDEPSDLRTLTDN 425 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 DI+ +K L+ +++ G DDIDHLGNRR+R VGE+ ENQ+R+GLVR+ERA+KER+SL + Sbjct: 426 DILTAIKVLVHLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMSLQE 485 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 + TLMP D+IN KP++A +KEFFG+SQLSQFMDQ N LSE+THKRR+SALGPGGLTRERA Sbjct: 486 ISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTRERA 545 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 GFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N+YGF+ETPY V +G VTDE+ Sbjct: 546 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDYGFIETPYHVVREGRVTDEV 605 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 +L A EG+ V+AQAN+ LDE+G+ V++ VT R KGE + RD+V MD+S Q+VS+ Sbjct: 606 LHLDASREGDQVVAQANALLDEQGNLVDEFVTVRVKGEVEMRHRDEVTLMDISPSQMVSI 665 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 A+LIPFLEHDDANRALMG+NMQRQAVP LR++KPLVGTGME VA DSG VA G Sbjct: 666 SAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEVDVARDSGACIVAPADGK 725 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 ++YVDA RIV+ E ++Y + G+ Y+L KY +SNQN+C Q P G+ V++G +L Sbjct: 726 IEYVDADRIVVA-YEGDVYKKQGGVRAYDLLKYHKSNQNSCFGQKPSCHPGQIVKKGQIL 784 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 ADGP D GELALG+N+ VAFMPW GYN+EDSIL+SER V+ED FT+IHI+E V+RDT Sbjct: 785 ADGPGIDDGELALGKNLVVAFMPWCGYNYEDSILISERTVKEDVFTSIHIEEFEVVARDT 844 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 KLGPEEIT DIPNV E L LDESGI+ IGA V DILVGK+TPKGETQLTPEEKLLR Sbjct: 845 KLGPEEITRDIPNVSEDMLRNLDESGIIRIGAAVKPDDILVGKITPKGETQLTPEEKLLR 904 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 AIFGEKA DVK++SL+VP GV GT+IDV+VF R EKD R L IE + ++ Sbjct: 905 AIFGEKARDVKNTSLKVPPGVEGTIIDVKVFNRRSGEKDDRTLAIEGHDTAVLDQKEADH 964 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG-------------------LTD 1004 ++ L + + +V V A K + +E G Sbjct: 965 MRALTDRTRALLIPHVVGKQVAASLPGKKKGEVLVEAGAALTEEMLASLPVKKLSGLFKS 1024 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 +E + + ++ + YD+ ++KR K+T+GDDL PGV+K+VKV++A+KR++ GD Sbjct: 1025 KEVNDAVAEILKPYDQQVDYLHAIYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKLSVGD 1084 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGV+S I P EDMP+ +G PVDIVLNPLGVPSRMNIGQI+ETHLG AK + Sbjct: 1085 KMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWGAKEL 1144 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G ++ +L + LR+ ++ + + + DEE LR G+ T Sbjct: 1145 GRQLAELLDSGAAMQVLRDEVKSIF---SSDDINALVDEMDDEEFKASVSKLRNGIVTKT 1201 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 PVFDGA E EI ++ L G+ LYDGRTGE F+ VT G MYMLKL+HLVD+K+H Sbjct: 1202 PVFDGATEEEIWSWMERAGLANDGKTTLYDGRTGEAFKNRVTTGVMYMLKLHHLVDEKIH 1261 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARSTG YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAY LQE LTVKSDDV GR KM Sbjct: 1262 ARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVKM 1321 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 Y+ IV G++ +E G+PESFNVL+KE+ SLG+N+ L E Sbjct: 1322 YEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQE 1359 >UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 Tax=Bacteria RepID=RPOB_SPHWW Length = 1455 Score = 1329 bits (3438), Expect = 0.0, Method: Composition-based stats. Identities = 771/1434 (53%), Positives = 999/1434 (69%), Gaps = 97/1434 (6%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG--QYGLEAAFRSVFPI 59 T KKRIRK FG +V+ +P L+ +Q +S+++F+ P GLE RSVFPI Sbjct: 5 AVPATAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPADGYVSGLEKTLRSVFPI 64 Query: 60 QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA--PEGTVKDI 117 + ++G +EL +V Y L +P +D EC+ RG+TY+AP+RV LRL+++E + +V DI Sbjct: 65 RDFAGTAELDFVQYELEDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTETRSVLDI 124 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 KEQ+VYMG++PLMT+NGTF+INGTERVIVSQ+HRSPGV FD D+GKTH+SGK L+ AR+I Sbjct: 125 KEQDVYMGDMPLMTENGTFLINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFAARVI 184 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN-----YTTEQILDLFFEKVIFEI 232 PYRGSWLDFEFD KD + VRIDR+RKLP T +LRAL ++ + V Sbjct: 185 PYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALGDAVIEVNPDKGKFEAGDIVAISG 244 Query: 233 RDNKLQMELVPERLRG-ETASFDIEANGKVYVEKGRR-------------------ITAR 272 + +++ V RL E + I G + +G + R Sbjct: 245 VNRACRVKAVAGRLVTVEDPTGAIIPGGLIQTAEGEKIGHVARIRLQGMSGEDILNYFYR 304 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE------------------------ 308 R + ++ + E G+ A D ++ TGE Sbjct: 305 TQRFVRGENGWKVPFVAENWRGQKPAFDVVNADTGEVVFPAGTKISPRAANKAGKDGLET 364 Query: 309 ------------------------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + A E++ + L L ++G ++ L + + G Sbjct: 365 LLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTPENLEALDKAGFDHVDLLDIDHVSTG 424 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 P+I TL+ D DR AL EIYR+MRPGEPPT+E AE+LF LFF +RYDLSAVGR+K Sbjct: 425 PWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSERYDLSAVGRVK 484 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 N L + + L +DI+ V+K L+D+++GKGE+DDID+LGNRR+RSVGE+ ENQ+ Sbjct: 485 LNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLENQY 544 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 RVGL+R+ERAVKER+S D+ T MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLSE+ Sbjct: 545 RVGLLRMERAVKERMSSVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEV 604 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSL+ +++ N+Y Sbjct: 605 THKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKY 664 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 GF+ETPYRK+ DG VT+E+ YLSA+EE + IAQAN+ LD EG FVEDL++ R GE + Sbjct: 665 GFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDSEGRFVEDLISAREAGEFLM 724 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 RD V MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +RA+ P VGTGM Sbjct: 725 APRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGM 784 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E VA DSG AKR G+V VDA+RIV++ + G++G+DIY L K+ RSNQ+TC Sbjct: 785 EETVARDSGAAIAAKRSGIVDQVDATRIVVRAT-GAVDAGKSGVDIYTLMKFQRSNQSTC 843 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 INQ P V +G+ V GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+V+ Sbjct: 844 INQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVK 903 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 +D FT+IHI E ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDIL Sbjct: 904 DDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILC 963 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 GK+TPKGE+ +TPEEKLLRAIFGEKASDV+D+SLR+P GVSGTV+DV+VF R G++KD+R Sbjct: 964 GKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHGIDKDER 1023 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-------------GVEAEKLDK 991 A+ IE ++ + KD +E IL ++R++ +L+ + E L + Sbjct: 1024 AMAIEREEIDRLTKDREDERAILNRANYARLKEMLLGQIATAAPKGIKKGSEINEELLAE 1083 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 + + W + + D+ +Q LE + QYD+ KK E + K+ +GD+L PGVLK+VK Sbjct: 1084 VEKREWWKFAVQDDARQADLEAVKAQYDDAVGLIVKKFEDRVEKLQRGDELPPGVLKMVK 1143 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V++AVKR++QPGDKMAGRHGNKGVIS+I P EDMP+ E+GTPVDIVLNPLGVPSRMN+GQ Sbjct: 1144 VFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQ 1203 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY------DLGADVRQKVDLSTFS 1165 I ETHLG AA+G+G ++ + L+ +E + D+ S Sbjct: 1204 IFETHLGWAARGLGKQVTSALEAWREANPDAQAATPPAAVVDRLKEVYGKEYHADIEGRS 1263 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 ++++ +A L+ G+P+ATPVFDGA+EA++ E+L+ L SGQ+ L+DGRTG+QF+R V Sbjct: 1264 TDQIVEMAGLLKNGVPMATPVFDGAREADVAEMLRRAGLDESGQVELFDGRTGDQFDRKV 1323 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 TVGY+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAY Sbjct: 1324 TVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAY 1383 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TLQEMLTVKSDDV GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1384 TLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1437 >UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Tax=Bacteria RepID=RPOB_DESAH Length = 1401 Score = 1281 bits (3314), Expect = 0.0, Method: Composition-based stats. Identities = 710/1397 (50%), Positives = 946/1397 (67%), Gaps = 59/1397 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSV 56 M S KRIRK+FG + +V+D+P L+ +Q SF++F++++ G+ F+SV Sbjct: 1 MTGSLLASKRIRKEFGSKSRVVDIPDLIGMQRTSFERFLQRNVPPEEREDIGIHLVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV-- 114 PI+ ++G S L+YVSY GE ++EC RG+TY P+ + +RLV+Y+ + G Sbjct: 61 LPIKDFTGTSSLEYVSYSFGETKHSMKECISRGMTYEIPVNITVRLVVYDVDKDAGVTSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +DIKEQE+Y G IPLMT GTF+INGTER +VSQLHRS GVFFD DKGK+HSSGK++Y A Sbjct: 121 RDIKEQEIYFGTIPLMTKRGTFIINGTERAVVSQLHRSSGVFFDHDKGKSHSSGKIIYTA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 RIIP RGSW+D E DPKD + +RIDRRRK P TI+ +A YT E IL F++K +D Sbjct: 181 RIIPVRGSWIDMEIDPKDIVNIRIDRRRKFPVTILFKAFGYTNEDILSFFYKKEQIVKKD 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 L E P+ L+ ASFDI G+ V+KGR T R ++QL+ +K I + E I Sbjct: 241 GILFKEFNPDNLKRNRASFDILDPETGEAVVKKGRLFTLRALKQLQVAGLKSIPISEEDI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ A + T E++ A + ++L K++ +G L+ + + +TL Sbjct: 301 IGRGFATSVVHPETEEILAKAGSLIDPEVLEKIADAGITEFSILYVDTYSSDS-MRKTLA 359 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 VD R AL+EIYR +RPG P T E A+ ++LFF YDLS VGR+K N L Sbjct: 360 VDKVTSRAEALIEIYRRLRPGNPATPEVAQDFIDHLFFKPAYYDLSNVGRLKMNHRLGMS 419 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L ++DI+ L+++++ +G VDDIDHLGNRR+R+VGE+ ENQ+R+GLVR+E Sbjct: 420 TGIDVRTLRREDILLTAATLVELKDTQGAVDDIDHLGNRRVRAVGELLENQYRIGLVRME 479 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 RA+KER+S+ ++D +MP D++N KP+SA V+EFFG+SQLSQFMDQ NPLSE THKRR+SA Sbjct: 480 RAIKERMSMQEVDAMMPHDLVNPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSA 539 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGLTRERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI SL YA+ N++GF+ETPYR Sbjct: 540 LGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIETPYR 599 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 DGVV+ +I +LSA EE + IAQAN+ LD++GH + DLVT R GE + +++ +++ Sbjct: 600 IAKDGVVSKQITHLSAFEEKEHPIAQANAVLDDQGHLMNDLVTSRVGGEFEMVAKNDIEF 659 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 MDVS Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +R++ PLVGTG+E VA DS Sbjct: 660 MDVSPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGIEGVVARDS 719 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 GV VA+ G+V VDA RIV+K E+ + + IY +K+ RSNQNTC N P V Sbjct: 720 GVAIVAEHDGIVVDVDAKRIVVKNTENGKGSDDRTVTIYTASKFVRSNQNTCFNHRPIVK 779 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 G+ V +G+V+ADGPST++GELALG+N+ VAFMPW GYN+EDSILVSER+V+E +T++H Sbjct: 780 KGDAVRKGEVIADGPSTEMGELALGKNVTVAFMPWGGYNYEDSILVSERLVKEGVYTSVH 839 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 ++E V+RDTKLG EEIT DIPN GE AL LD+SGI+ +GAEV GDILVGK+TPKGE Sbjct: 840 VEEFEVVARDTKLGKEEITRDIPNAGEEALKDLDDSGIIRLGAEVKPGDILVGKITPKGE 899 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ 952 TQL+PEEKLLRAIFGEKA DVKD+SLRVP GV G V +VF+R G+ KD R IE+++ Sbjct: 900 TQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVTAAKVFSRRGLPKDDRTRLIEDLE 959 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAG------------------GVEAEKLDKLPR 994 +++ +KD +E++I+ + R+ +L V + + Sbjct: 960 IEKLEKDRDDEVRIITETIQERLEDILAGQALQAVVKKGKKVVVPAGTLVTRGLFEGISL 1019 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + L + D + E+ + + + + + +GDDL PGVLK++K+ + Sbjct: 1020 TDLMGLTVEDSSLTEMAHVILEKAETQIKKARENFNNQASRYEKGDDLPPGVLKLIKINV 1079 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A+KR + GDKMAGRHGNKGV+S+I P+ D+PY E+G VD+VLNPLGVPSRMN+GQILE Sbjct: 1080 AMKRVLSVGDKMAGRHGNKGVVSRILPVADLPYFEDGRTVDMVLNPLGVPSRMNVGQILE 1139 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVA--------------------------------KLR 1142 HLG AA+G+G +I+ ++ +++ Sbjct: 1140 IHLGCAARGLGRQIDDLIYEKKTDELRARIKRIFTTPLIKTGERANKDKTHYDFSSHYTV 1199 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 E +++ + D E + A + G+ +ATPVFDGA E+EIK L+ Sbjct: 1200 EKSMAKRTNEEEIQFVDTIDHMDDTEFLEFASMYKNGVHMATPVFDGAAESEIKSLISYA 1259 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 L SGQ LYDGRTGE F++P+TVG MYMLKL+HLVDDK+HARS G YSLVTQQPLGGK Sbjct: 1260 GLDPSGQSTLYDGRTGEPFDKPITVGIMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGK 1319 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES 1322 AQFGGQR GEMEVWA+EAYGAA+ LQE +TVKSDD+ GRT+MY+ IV G + +EPGMPES Sbjct: 1320 AQFGGQRLGEMEVWAMEAYGAAHALQEFITVKSDDMTGRTRMYEKIVKGQNVLEPGMPES 1379 Query: 1323 FNVLLKEIRSLGINIEL 1339 F VL KE++SLG++I L Sbjct: 1380 FRVLTKELQSLGLDINL 1396 >UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFV8_THEYD Length = 1312 Score = 1261 bits (3262), Expect = 0.0, Method: Composition-based stats. Identities = 717/1361 (52%), Positives = 961/1361 (70%), Gaps = 84/1361 (6%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSY 62 + R R +FGK P +++VPYLL Q SF KF+++D GL++A SVFPI Y Sbjct: 3 KPLRERINFGKVPPLVEVPYLLEFQRKSFDKFLQKDIPPEERADEGLQSALNSVFPISDY 62 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT-VKDIKEQE 121 +G + ++++SY +GEP EC ++G+TYS P+++K+RL I++++ +K+ +EQE Sbjct: 63 NGTTTIEFISYSVGEPKLTPYECMVKGLTYSVPIKMKVRLNIWDKDEEGRKFLKESREQE 122 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 V++G++P+MT+ G+F+ING ERVIVSQLHRSPGV+F D+ K+ SG+ LY+ARIIP RG Sbjct: 123 VFLGDLPMMTETGSFIINGVERVIVSQLHRSPGVYFAPDRSKSRISGRFLYSARIIPVRG 182 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 SWLDFEFD KD L+VRID+R+KLPATI+L+AL YT E +L +F+ I+D + Sbjct: 183 SWLDFEFDSKDLLYVRIDKRKKLPATIVLKALGYTNEDLLRIFYPIEEIRIKDETTYTRV 242 Query: 242 VPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 V + L G DI + V++G +IT ++++++ ++ I + I G++ Sbjct: 243 VSDILTGVRTKVDICSADGKDIIVKEGSKITRYSLKKMKELGIQEIPISKSEIIGRITLS 302 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 D +D TGE+I +N E++ + ++ + +++E LF +++++ P + ETL D ++ Sbjct: 303 DIVDPETGEVIVDSNKEITEESFHRIISARIQKLELLFIDNINYLPSLRETLLTDKVENK 362 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL EIY+ +RPGEP T EAAE LF LFF RYDLS+VGR+K N+ L + + Sbjct: 363 KHALREIYKKLRPGEPATEEAAEELFYGLFFDPKRYDLSSVGRLKLNQKLGLDIPLDVRV 422 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+ DII+++K L+++R GKGEVDDIDHLGNRR+R VGE+ ENQFR+GLVR+ERA++E++ Sbjct: 423 LTDKDIIEIVKYLLNLRTGKGEVDDIDHLGNRRVRGVGELLENQFRIGLVRMERAIREKM 482 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 ++ D++T MP D+IN KP+ AAVKEFF +SQLSQFMDQ NPLSEITHKRR+SALGPGGLT Sbjct: 483 TITDVETAMPHDVINTKPVMAAVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLT 542 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI SL+ YA+ N++GF+E+PYRKV +G V Sbjct: 543 RERAGFEVRDVHPTHYGRICPIETPEGPNIGLITSLATYARINDFGFIESPYRKVVNGKV 602 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 T+++H+LSA+E NYVIA+A + +DEEG+ + + V+ R KG+ + SR++V+YMDVS +Q Sbjct: 603 TNDVHFLSALESENYVIAEATTPVDEEGNIIGETVSARVKGDFKMVSREEVEYMDVSPKQ 662 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VS+ ASLIPFLE+DDANRALMG+NMQRQAVP + + P+VGTGME A DSG VAK Sbjct: 663 IVSLSASLIPFLENDDANRALMGSNMQRQAVPLIHTEAPIVGTGMELYAARDSGWLVVAK 722 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 R G+V+ VD+ RIVI+V E G+DIYNL K+ +SNQ TC+ Q P V +G+ VER Sbjct: 723 RAGIVENVDSRRIVIRVTE-----EGGGVDIYNLVKFHKSNQGTCMTQKPIVKVGQTVER 777 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 G +LADGP D GELALG+N+ VAFMPW GYNFED+ILVSER+V+ED +T+IHI E Sbjct: 778 GTILADGPCMDNGELALGRNVLVAFMPWGGYNFEDAILVSERLVKEDVYTSIHIDEFEIE 837 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 RDTKLGPEEIT +IPNV E L LDE GI+ IGA+V GDILVGKVTPKGE LTPEE Sbjct: 838 CRDTKLGPEEITREIPNVNEELLKNLDEDGIIRIGAKVKAGDILVGKVTPKGERVLTPEE 897 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 KLL AIFGEKA DVK+S L VP G+ G VIDV++ TR G EK +RA IEE ++K+ ++D Sbjct: 898 KLLYAIFGEKAEDVKESCLYVPPGIEGVVIDVKILTRKGKEKSRRANAIEEEEIKRIERD 957 Query: 960 LSEELQILEAGLFSRIRAVLVAG----GVEAEKLDKLPRD--------------RWLELG 1001 +E++IL+ SRIR +L V+ + P+ + L+L Sbjct: 958 REDEIRILKETKASRIRKILKGKIILEDVKKGEKIICPKGKALTEKVVNLLDVNQLLKLK 1017 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 + D + + ++ ++ ++ ++ + K K +I +GD+L PGV +IVKVY+A+KR+IQ Sbjct: 1018 VEDPDVKAEVSRVNKEVEQNIKQIYAKYNEKIERIKKGDELPPGVNQIVKVYIAMKRKIQ 1077 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDKMAGRHGNKGV+S I P EDMPY E+GTPVDIVLNPLGVPSRMN Sbjct: 1078 VGDKMAGRHGNKGVVSMILPEEDMPYLEDGTPVDIVLNPLGVPSRMN------------- 1124 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G + L + G+ Sbjct: 1125 --VGQILETHLGLAAKAL---------------------------------------GLY 1143 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 +A+PVF+GAKE EIKE+ + PT+GQ+ LYDG+TGE FERPVTVGYMYMLKL+HLV D Sbjct: 1144 VASPVFEGAKEDEIKEMFRKVGYPTTGQVTLYDGKTGEPFERPVTVGYMYMLKLHHLVAD 1203 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAYTLQE LTVKSDD+ GR Sbjct: 1204 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDITGR 1263 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 T+MY+ IV G+ +EPG+PESFNVL+KE++SL ++++L ++ Sbjct: 1264 TRMYEAIVKGHPVLEPGVPESFNVLIKELQSLCLDVDLLEK 1304 >UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria RepID=C1F3Y3_ACIC5 Length = 1496 Score = 1260 bits (3259), Expect = 0.0, Method: Composition-based stats. Identities = 735/1473 (49%), Positives = 959/1473 (65%), Gaps = 152/1473 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYS-- 63 R R DF K P + +P L+ +Q S+++F++ D GL++ F SVFPI + Sbjct: 9 RSRLDFSKIPTSIKIPNLIEVQRRSYERFLQMDKLPTEREDNGLQSVFTSVFPIADFRNI 68 Query: 64 ----------GNSELQYVSYR--------------------------------------- 74 GN E + + Sbjct: 69 SQLDFVDYSIGNWECKCGHLKGLHHLRTACTHCGNMVITDPFHPGDVLCQKCGTYNKNTP 128 Query: 75 -----LGEP-----VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE--GTVKDIKEQEV 122 G+P +D EC+ RG+T+SAPL+V +RL IY+++ T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDQAECEERGMTFSAPLKVTVRLTIYDKDPETGAKTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G+IPLMT NGTF++NGTERVIVSQLHRSPGVFF++ ++ + + +IIPYRGS Sbjct: 189 FFGDIPLMTQNGTFIVNGTERVIVSQLHRSPGVFFET------ANNRTYFLGKIIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQME- 240 W++FE+D K+ L+VRIDR+RK TI LRAL + E+IL F+ +++D KL Sbjct: 243 WVEFEYDQKNTLYVRIDRKRKFLGTIFLRALGLKSDEEILKTFYTVDRIQVKDGKLYWTV 302 Query: 241 ---LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 P L G + + NG+ V GR+ITA ++ + + ++ IE+ + G + Sbjct: 303 AEAGTPTHLLGAKPAHAVVHNGQEIVHSGRKITASVLKAIREAKLEQIEIDTTDLDGAMT 362 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 A D ID TGE++ AN EL+ D L K+ ++G +E F D G I+ TLR D Sbjct: 363 AADVIDTETGEVLLEANHELTPDKLHKIVEAGIPTVEVFFPERDDVGNIITNTLRRDSVR 422 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EI 414 AL+EIYR +RPG+PPT + A +LFE +FF +YD S VGR+KFN L Sbjct: 423 KPEEALIEIYRKLRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYENAEETP 482 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 L+ D ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+ERA Sbjct: 483 LDHRTLTAGDFYSTIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIGLVRMERA 542 Query: 475 VKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 +KE++S ++ T MP D+INAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 543 IKEKMSVYQEMSTAMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSAL 602 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS +A+ NEYGF+E+PYR+ Sbjct: 603 GPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRR 662 Query: 594 VTDGVVTDEI------------------------------------------HYLSAIEE 611 V DG V D + YLSA EE Sbjct: 663 VRDGQVLDFVAVTNAGESGLRVGDYLEKAEALKLNDKLRAEKKRIIEFEPFSFYLSAWEE 722 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 + IAQAN LDE H VEDLV R +G L +R++VDY+DVS +Q+VSV ASL+PFL Sbjct: 723 DRHTIAQANVKLDENKHIVEDLVNARRQGNFVLVNREEVDYVDVSPKQLVSVAASLVPFL 782 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EHDDANRALMGANMQRQ+VP L ++ PLVGTGME A DSG +A+R GVV VD+ R Sbjct: 783 EHDDANRALMGANMQRQSVPLLVSEAPLVGTGMEGVTARDSGAVILARRNGVVDSVDSER 842 Query: 732 IVIKVN---EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 I+++V E G DIY L K+ RSNQNTCINQ P V G+ V +G V+ADGP Sbjct: 843 IIVRVEGEHHPTQLSREVGSDIYQLIKFKRSNQNTCINQKPIVRKGDRVLKGQVIADGPC 902 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 T+ GEL LG+N+ VAFMPW GYNFED+IL+SE++V+ED +T++HI+E +RDTKLGPE Sbjct: 903 TEQGELGLGRNVLVAFMPWRGYNFEDAILISEKLVKEDYYTSVHIEEFEIEARDTKLGPE 962 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 EIT DIPNV E AL LDESGI+ IGA+V DILVGKVTPKGETQLTPEEKLLRAIFGE Sbjct: 963 EITRDIPNVSEHALRDLDESGIIRIGAKVKHNDILVGKVTPKGETQLTPEEKLLRAIFGE 1022 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 KA DV+D+SL P G+ GTV+DV++F+R G EKD+RA +IE Q+ + +K+L +E++IL Sbjct: 1023 KAGDVRDASLTCPPGIEGTVVDVRIFSRKGQEKDERAKQIEAEQVAKLEKNLEDEIRILT 1082 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWL----------------------ELGLTDEE 1006 R+ A+L V A+ D+ R L D Sbjct: 1083 DERLKRLEAILGGKVVLADLHDERTNKRLLVKDAVLDRDAIERISTRNLKRIRYADKDPR 1142 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 Q++++ E K + K+ +GD+L+PGV+K+VK+Y+A+KR++ GDKM Sbjct: 1143 VNEQIDEIEEMTSRQIDVLRKITNERIAKLQKGDELSPGVIKMVKIYIAMKRKLSVGDKM 1202 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKGVI++I P EDMPY +GTPV+IVLNPLGVPSRMN+GQILETHLG AA +G Sbjct: 1203 AGRHGNKGVIARILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAHDLGV 1262 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 ++ A++KQ Q+ +RE I+ + A + Q L DE+++R+ + +G+ T V Sbjct: 1263 QVAAIVKQHQDANVIREVIKERFKGTAVINQ---LIELEDEQLLRVGAGMARGIWFGTAV 1319 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 FDGAKE EIK LL+ LPTSG+ +L+DG TGE FE+PVTVG++YMLKL+HLVDDK+HAR Sbjct: 1320 FDGAKEEEIKALLESAGLPTSGKTKLFDGMTGEAFEQPVTVGFIYMLKLSHLVDDKIHAR 1379 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 S G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+Y+ Sbjct: 1380 SIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIYE 1439 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1440 AIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1472 >UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 Tax=cellular organisms RepID=RPOB_ACIBL Length = 1489 Score = 1240 bits (3208), Expect = 0.0, Method: Composition-based stats. Identities = 732/1475 (49%), Positives = 961/1475 (65%), Gaps = 154/1475 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYS-- 63 R R+DF K P + +P L+ +Q S+ +F++ D GL+A F+SVFPI + Sbjct: 9 RNRQDFSKIPATIQIPNLIEVQKRSYDRFLQMDLLPSERDDAGLQAVFQSVFPITDFRNV 68 Query: 64 ----------GNSELQYVSYR--------------------------------------- 74 GN E + + Sbjct: 69 SQLEFVDYAIGNWECKCGHLKGLHHLRTTCKNCGATVVTDPFHPGDVLCHKCGTFNANTP 128 Query: 75 -----LGEP-----VFDVQECQIRGVTYSAPLRVKLRLVIYEREA--PEGTVKDIKEQEV 122 G+P +DV EC+ RG+TYSAPL+V +RL I++++ T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDVAECEERGMTYSAPLKVTMRLTIFDKDPETNNRTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G++PLMT NGTF+INGTERVIVSQLHRSPGVFF++ ++ + + +IIPYRGS Sbjct: 189 FFGDVPLMTQNGTFIINGTERVIVSQLHRSPGVFFET------ANNRTYFLGKIIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMEL 241 W++FE+D K+ L+VRIDR+RK TI LRAL T E IL F+ ++D KL L Sbjct: 243 WVEFEYDQKNILYVRIDRKRKFLGTIFLRALGLRTDEDILRTFYTVDRIAVKDKKLYWTL 302 Query: 242 -----VPERLRGETASFDIE-ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 P L G S I+ NG+ GR++TA +++++K + +E+ + + G Sbjct: 303 EPGIERPTNLVGLKLSHAIKAKNGEEVAHSGRKVTASVLKEIQKHKISELEIELGDLEGA 362 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 VA D ID +TGE++ AN EL+ D L+K+ +G + F D G IS TLR D Sbjct: 363 YVASDVIDTNTGEVLLEANQELTADKLSKMIDAGIGEVNVFFPERDDVGTVISATLRRDS 422 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR---E 412 AL+EIYR +RPG+PPT + A +LF +FF +YD S VGR+KFN L Sbjct: 423 VKTPQEALIEIYRKLRPGDPPTLDTATALFHGMFFDARKYDFSRVGRLKFNIKLFDRQDP 482 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L DD ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+E Sbjct: 483 TGLDKRTLDPDDFYHTIRYLLKLRRNLGAVDDIDHLGNRRVRAVGELLENQFRIGLVRME 542 Query: 473 RAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 RA+KE++S ++ T MP D++NAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+S Sbjct: 543 RAIKEKMSVYQEMSTAMPHDLVNAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLS 602 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 ALGPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS YA+ N+YGF+E+PY Sbjct: 603 ALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCYARINDYGFIESPY 662 Query: 592 RKVTDGVVTDEI------------------------------------------HYLSAI 609 R+V G V D + YLSA Sbjct: 663 RRVKGGRVIDYVQVTHAGDSDYRVGDKMEKSEAQKANEELRGRKKRGIELEPYSFYLSAW 722 Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 EE + IAQAN+ LDE+G +LV R G L SRD +DY+DVS +Q+VSV ASL+P Sbjct: 723 EEDKWTIAQANAELDEKGKITSELVNARKAGNFVLISRDDIDYIDVSPKQLVSVAASLVP 782 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 FLEHDDANRALMGANMQRQ+VP LRA+ P+VGTGME A DSG +A+R G++ VD+ Sbjct: 783 FLEHDDANRALMGANMQRQSVPLLRAEAPIVGTGMEGVTARDSGAVVLARRSGIIDSVDS 842 Query: 730 SRIVIKVN---EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 R++++V E G DIY LTK+ RSNQNTCINQ P V G+ V++G V+ADG Sbjct: 843 ERVIVRVEGEHHPMQLSREVGSDIYQLTKFKRSNQNTCINQKPIVKQGDHVKKGQVIADG 902 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 P TD GEL LG+N+ V+FMPW GYNFED+ILVSE++V+ED +T++HI+E +RDTKLG Sbjct: 903 PCTDHGELGLGRNVLVSFMPWRGYNFEDAILVSEKLVKEDYYTSVHIEEFEIEARDTKLG 962 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 PEEIT DIPNV E+AL LDESG++ IGA V GDILVGKVTPKGETQLTPEEKLLRAIF Sbjct: 963 PEEITRDIPNVSESALRDLDESGVIRIGAPVKAGDILVGKVTPKGETQLTPEEKLLRAIF 1022 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI 966 GEKA DV+D+SL P G+ G V+DV++F+R G EKD+RA +IE Q+ + +K+L++E++I Sbjct: 1023 GEKAGDVRDASLTCPPGIEGVVVDVKIFSRKGQEKDERAKQIEGTQIAKLEKNLADEIRI 1082 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL----------------------TD 1004 L R+ +L A V+A+ D+ R L D Sbjct: 1083 LTDERLKRLEGLLGAKVVQADLHDERTNKRLLTKDAVLDRETIERISTRNLKRIKYADKD 1142 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 Q++++ E K + K K+ +GD+L PGV+K+VKVY+A+KR++ GD Sbjct: 1143 PRVNEQIDEIEEMTSRQIDVLRKIVREKIEKLQKGDELPPGVIKLVKVYIAMKRKLSVGD 1202 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGVI++I P EDMPY E+GTPV+IVLNPLGVPSRMN+GQILETHLG A + Sbjct: 1203 KMAGRHGNKGVIARILPEEDMPYLEDGTPVEIVLNPLGVPSRMNVGQILETHLGWAGHEL 1262 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G KI + + E ++R+ +++ + A V ++ DE ++++A+ ++ G+ + Sbjct: 1263 GKKIAEFMVENSEAGQVRKHLKQLFKDTAFVDH---VTELDDEMLLKVAKGMQDGVFFGS 1319 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 VFDG+ EAEIK LL LPTSG+ LYDG TG++FE+PVTVGY+YMLKL+HLVDDK+H Sbjct: 1320 AVFDGSTEAEIKSLLDQAGLPTSGKTFLYDGMTGDRFEQPVTVGYIYMLKLSHLVDDKIH 1379 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARS G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+ Sbjct: 1380 ARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKI 1439 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Y+ IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1440 YEAIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1474 >UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926 Tax=root RepID=RPOBC_HELPS Length = 2890 Score = 1173 bits (3035), Expect = 0.0, Method: Composition-based stats. Identities = 631/1379 (45%), Positives = 889/1379 (64%), Gaps = 48/1379 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M K R+R DF K P L+VP LL +Q DS+ F+ + G+E F+S+FPIQ Sbjct: 1 MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQ 60 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYERE---APEGTVKDI 117 L+Y G+ + V+E RG+TYS PL++K+RL+++E++ + +KDI Sbjct: 61 DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI 120 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 KEQ +++ EIPLMT+ +F+ING ERV+V+QLHRSPGV F ++ T S K++Y +II Sbjct: 121 KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESST-SLNKLIYTGQII 179 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 P RGSWL FE+D KD L+ RI++RRK+P TI+ RA++Y + I+ +F+ V ++K Sbjct: 180 PDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKY 239 Query: 238 QMELVPERLRGETASFDIE-ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 + + FD++ GKV + G+++T+R I++L+++ ++ +E P++ + + Sbjct: 240 LIPFA-SLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRH 298 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI--------- 347 +A+ + E++ +L + L K+ G + + L H I Sbjct: 299 LAEPVMVGK--EVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSE 356 Query: 348 -SETLRVDPTNDRLSALVEI--YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 + L+ D +AL I +++M+PG+P T E A+ + LFF +RYDL+ VGRMK Sbjct: 357 SLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMK 416 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 N L + L+ +DII +K L+ I+N +G++DD DHLGNRRIR+VGE+ N+ Sbjct: 417 MNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANEL 476 Query: 465 RVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 GLV++++ +K++L+ G D+LMP D++N+K I++ + EFF QLSQFMDQ NPLS Sbjct: 477 HSGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLS 536 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALG GGL ++R GFE RDVHPTHYGR+CPIETPEG NIGLIN+LS + + N Sbjct: 537 EVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVN 596 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 + GF+E PY+KV DG V E YL+AI+E +++IA A++ +DEEG+ + DL+ R +GE Sbjct: 597 DLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEI 656 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 L + +V MD+S+ +V V ASLIPFLEHDDANRALMG NMQRQAVP LR D P+VGT Sbjct: 657 VLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRNDAPIVGT 716 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 G+E+ +A DS A R GVV+ +D+ I I EA ID Y+L K R+NQN Sbjct: 717 GIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGE----GKEEAYIDAYSLQKNLRTNQN 772 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 T NQ+P V +G+ VE G ++ADGPS D GELALG+N+RVAFMPWNGYNFED+I+VSER+ Sbjct: 773 TSFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERI 832 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 ++D FT+ HI E +R+ K G EE TADIP+V E AL+ LDESGIV +G V+ G I Sbjct: 833 TKDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMI 892 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 LVGK +PKGE + TPEE+LLRAIFG+KA V + SL P + GTVIDV+VFT+ G EKD Sbjct: 893 LVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKD 952 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA---------GGVEAEKLDKLP 993 R L E + + + + L +L R+ ++L G + ++ D++P Sbjct: 953 ARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIP 1012 Query: 994 RDRWLEL---------GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 ++ + +E QN E + E K ++ E K + + D L Sbjct: 1013 KEEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPN 1072 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 GV+K VK+Y+A KR+++ GDKMAGRHGNKG++S I P+ DMPY +G PVDIVLNPLGVP Sbjct: 1073 GVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVP 1132 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQ----QEVAKLREFIQRAYDLGADVRQKVD 1160 SRMNIGQILE HLG+ K G +I +ML+ + + + + G D Sbjct: 1133 SRMNIGQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINGKDPLTIHV 1192 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 L + SDEE++ A++ KG+ +A PVF+G + + +L +L + G++ LYDGRTGE+ Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 V VGYMYM+KL+HLVD+K+HARSTG YSLVT QP+GGKA FGGQRFGEMEVWALEA Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 YGAA+TL+EMLT+KSDD+ GR Y+ I G E +PE+F VL KE++SL ++I + Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINI 1371 >UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189 Tax=cellular organisms RepID=RPOBC_WOLTR Length = 2839 Score = 1151 bits (2977), Expect = 0.0, Method: Composition-based stats. Identities = 670/1422 (47%), Positives = 899/1422 (63%), Gaps = 96/1422 (6%) Query: 12 RKDFGKRPQVLD-VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 R + + + D + L+ +Q +S++ F G LE+ FRSVFPI + +++ Sbjct: 16 RISYSRSIDLKDSLLDLVKVQKESYKSF-TPGNHGNERLESIFRSVFPINDPLHRATIEF 74 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK------------ 118 +S R+ P +D EC RG+T+SA + +RLVI + K IK Sbjct: 75 ISCRIDNPKYDESECIKRGITFSARVIASIRLVIMQDGISLDEYKSIKGSGDHSKLSTII 134 Query: 119 ----EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 EQEV+ E+P+MTD GTF+ING E+VIVSQ+HRSPGVFFDSDKGKT++SGK++Y+A Sbjct: 135 KFIGEQEVHFCELPMMTDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKLIYSA 194 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLD EFD KD L+ RIDR+RKLP +++L+AL + ILD F+EK+ + Sbjct: 195 RVIPYRGSWLDIEFDVKDLLYFRIDRKRKLPISVLLKALGLSNSDILDRFYEKIKYIKYK 254 Query: 235 NKLQMELVPERLRGETASFDIEANG-KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 N ++ VP++ +G FD+ V + RIT+R ++L D++K VP + I Sbjct: 255 NSWKVPFVPDKFKGVRLPFDLMDVEGNVLFKANVRITSRLAKKLHDDELKEYLVPFDSIC 314 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G +A+D ID + I +A + ++ + KL I L ++L GPYI TL + Sbjct: 315 GLFLAEDLIDSVSSTKILSAGESIKIEDVKKLELLSIGEISVLNIDNLSVGPYILNTLFL 374 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 D AL EIY+++RPGE P E E F NLFF+ + YDLS +GR+K N L + Sbjct: 375 DENMSYQDALYEIYKVLRPGEVPVLEIVEEFFHNLFFNPEYYDLSNIGRLKLNSYLGLDY 434 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 E +L+ +DII++++K++ +R+G+G VDDIDHLGNRR+RSVGE ENQFR GL+++ER Sbjct: 435 DEDLTVLTHEDIIEIVRKIVLLRDGQGSVDDIDHLGNRRVRSVGEFIENQFRAGLLKLER 494 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 AV + +S LD + D IN K ++ +++FF SSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 495 AVIDSMSTSSLDKVSSPDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHKRRLSAL 554 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGLTR+RAGFEVRDVHPTHYGR+CPIETPEG NIGLINSL++YA+ N+YGF+E+PYRK Sbjct: 555 GPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARVNKYGFIESPYRK 614 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V + V TD+I YLSAI+EG Y IA A++ LD F++D++ CR G + S DQV Y+ Sbjct: 615 VINRVATDQIEYLSAIDEGLYYIADASAKLDNNNRFIDDMLYCRYAGNFVMVSSDQVSYI 674 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DVS +QV+SV ASLIPFLE+DDANRALMG+NMQRQAVP L+ PLVGTG+E VA SG Sbjct: 675 DVSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAPLVGTGIESFVASGSG 734 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 +AKR G+V D++ IVI+ ++E G+DIY+L K+ RSN NTCINQ P V + Sbjct: 735 AVVLAKRDGIVDSSDSNSIVIRAFDEERVNY-LGVDIYHLKKFQRSNHNTCINQKPLVRI 793 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V+ GDV+ADGP+ + GELALGQN+ VAFM W GYNFEDSI++S +V++D FT+IHI Sbjct: 794 GDYVKEGDVIADGPAINSGELALGQNLLVAFMSWQGYNFEDSIIISSEIVKKDLFTSIHI 853 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +E CV DT LG E+IT IP V E L LD SGIV IG V G ILVGK+TPK Sbjct: 854 EEFECVVHDTPLGSEKITRAIPGVNEENLYHLDNSGIVKIGTRVGPGYILVGKITPKPSL 913 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 L PE KLL IFGEK+ D DSSL V GTVIDVQVFTR GVE+++RAL I++ ++ Sbjct: 914 LLPPETKLLMTIFGEKSFDCADSSLYTSPDVEGTVIDVQVFTRRGVEENERALLIKQKEM 973 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLV-AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 +K+ + + + ++ +LV + + EKLD + R++W +GL + Q++ Sbjct: 974 NDLEKERDYIINVASEYFYDELKKLLVHSCSQDQEKLDAIEREQWWGIGLKNRSISEQVK 1033 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 L + +D+ + + K K+ +G DL GVL VKV++AVK +QPGDKMAGRHGN Sbjct: 1034 NLKKDFDKKVSNTIAQFKQKVEKLDEGYDLPQGVLMSVKVFIAVKHSLQPGDKMAGRHGN 1093 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KGVIS++ P+EDMPY E+GTPVDI+LNPLGVPSRMN+GQILETH+G A K +G+++ +L Sbjct: 1094 KGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQILETHVGWACKKLGERVGNIL 1153 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 E+ K+ + D + + D + + + G Sbjct: 1154 ---DEINKINSDFCKEIRSLDDNNFAKFAAVYFDNKKTEEVRDDEITDSLVNIPNKGLLN 1210 Query: 1193 AEIKELLKLG----------------DLPTSGQIRLYDG-----------------RTGE 1219 E+ L++ ++ + G R G Sbjct: 1211 DELNALVENYLNSCKSAYDNLRSFLIEVYSCGSDVSICNNIRDISNSNLIEFAHKLRNGI 1270 Query: 1220 QFERPVTVGY---------------------------------------MYMLKLNHLVD 1240 PV G MYMLKL+HLVD Sbjct: 1271 PVAAPVFEGPKDKNIIKLFTLAGLDPSGQTEAYDGRTGEKFDRKVTVGYMYMLKLHHLVD 1330 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 DK+HARS G YSLVTQQPLGGK+ FGGQRFGEME WAL+AYGAAYTLQEMLTVKSDD+NG Sbjct: 1331 DKIHARSVGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDING 1390 Query: 1301 RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R K+Y++I+ G+ E G PESFNV++KE+RSL +N+ L+ Sbjct: 1391 RVKIYESIIKGDSNFECGTPESFNVMIKELRSLCLNVALKQN 1432 >UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Tax=Bacteroidetes RepID=RPOB_SALRD Length = 1287 Score = 1137 bits (2940), Expect = 0.0, Method: Composition-based stats. Identities = 598/1359 (44%), Positives = 825/1359 (60%), Gaps = 122/1359 (8%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 R+ F P+V D P L +QL +F F++ D GL+A F FPI+ Sbjct: 21 RESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPIKDNRDRYT 80 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L++V+Y L P V+EC +G+TYS PL+ LRL + E + EQEVY+G + Sbjct: 81 LEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLT-SKEEEGGEEAIEAIEQEVYLGTL 139 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P MTD GTF++NG ERVIVSQLHRSPG FF+ + HS+G L++AR+IP+RGSW++F Sbjct: 140 PFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKEI---HSNGTELFSARVIPFRGSWMEFS 196 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 D +D L+ +DR++K+P T +LRAL + + E+I+ +F +I D E L Sbjct: 197 TDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDEDEF----EEHL 252 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 E A+ V++ + +E Sbjct: 253 GRELATSVTIEKTIEIVDEDT------------------------------GEVVDEEME 282 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD---HGPYISETLRVDPTNDRLSAL 363 E++ A EL +L + R+ + + D + ETL+ D ++ AL Sbjct: 283 REVLLPAEHELEEGDWEELDEYDVSRLYLVREDVEDEALDKSTLVETLQKDSSHTEEEAL 342 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 IY +R E P ++A E LFF+EDRYDL VGR + N L + +L+K+ Sbjct: 343 EVIYEKLRGSEAPDLDSAREALERLFFNEDRYDLGDVGRHRMNARLDVDVDTDEKVLTKE 402 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 D++ ++++LI ++NG+ DDIDHL NRR++SVGE +QF +GL R+ R +KER++L D Sbjct: 403 DVVGIVRELIRLQNGESTADDIDHLSNRRVKSVGEQLGSQFSLGLARMARTIKERMNLRD 462 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 D P+D++NA+ I + + FFG++QLSQFMDQ N L+E+THKRR+SALGPGGLTRERA Sbjct: 463 ADKFTPKDLVNARTIESVINTFFGTNQLSQFMDQTNALAEMTHKRRMSALGPGGLTRERA 522 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 GFEVRDVH THYGR+CPIETPEGPNIGL+ SL V++ N++GFLETPYR V DG VTD + Sbjct: 523 GFEVRDVHHTHYGRLCPIETPEGPNIGLMLSLCVHSTINDFGFLETPYRVVEDGRVTDRV 582 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 YLSA EE +AQAN+ + ++GHF D V CR +G+ + ++VDYMDV+ Q+VS Sbjct: 583 EYLSAEEEDQATVAQANAPIGDDGHFERDEVRCRHQGDFPIVEPEEVDYMDVAPNQIVSP 642 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 ASL+PFL H+DANRALMG+NMQRQ VP LR+D P+VGTG+E VA DS VA+ GV Sbjct: 643 SASLVPFLSHNDANRALMGSNMQRQGVPLLRSDSPIVGTGLEGRVAKDSRSCVVAEGEGV 702 Query: 724 VQYVDASRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 V+YVDA R+V++ +E++ + Y LTK+ R+NQ TC+NQ P V G+ VE G Sbjct: 703 VEYVDAERLVVRYDEEQDKTDLTFGEPVQEYELTKFRRTNQGTCMNQKPIVQAGDRVEEG 762 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +VL DG + + GELALG+N+ AFMPW+GYN+ED+I++SER+V +D +T++HI+E Sbjct: 763 EVLTDGFAMEKGELALGKNVLCAFMPWHGYNYEDAIVISERLVADDVYTSVHIEEFEHEV 822 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 RDTK G EE+T +IPNV E A LDE GIV +GAE+T GDI+VGK+TPKGET TPEEK Sbjct: 823 RDTKRGEEELTREIPNVSEEATKDLDERGIVRVGAEITPGDIIVGKITPKGETDPTPEEK 882 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVE--------------KDKRA 945 LLRAIFG+KA DVKD+SL+ G+ G VID ++F+R ++ + Sbjct: 883 LLRAIFGDKAGDVKDASLKAKPGMEGGVVIDTRLFSRRELDPASKKMEEKRLENIESDHE 942 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---LDKLPRDRWLELGL 1002 ++ ++ + +K + AGL R VL+ G + E+ + P D Sbjct: 943 RKLADLNERFWEKFFALVEDATSAGLEDREGEVLLTEGADFEEDAFDEVDPSDLSTRAEF 1002 Query: 1003 T-DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 T DEE +Q+ L Y + + E + ++ ++ GD+L GV+++ KVY+A K++I+ Sbjct: 1003 TEDEELNDQISTLLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKVYVARKKKIE 1062 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDKMAGRHGNKGVI+KI P+EDMP+ ++GTPVD+VLNPLGVPSRMN+GQI ET LG A Sbjct: 1063 VGDKMAGRHGNKGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQIYETLLGWAG 1122 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G K + + + + +++A Q D T Sbjct: 1123 DRLGVKYATPIFDGASLEDVGDELEKAGLPRDGKVQLYDGRT------------------ 1164 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 FD TVG +YM+KL HLV+D Sbjct: 1165 --GEPFDE----------------------------------KTTVGQIYMMKLEHLVED 1188 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 KMHARS G YSL+TQQPLGGKAQFGGQR GEMEVWAL AYGA+ TLQEMLT KSDDV GR Sbjct: 1189 KMHARSIGPYSLITQQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLTFKSDDVEGR 1248 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ Y++IV G + PG+PESFNVL++E++ LG+ + L+ Sbjct: 1249 SEAYESIVKGENLPSPGVPESFNVLVRELQGLGLEVTLD 1287 >UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella RepID=D1BP72_VEIPT Length = 1386 Score = 1105 bits (2857), Expect = 0.0, Method: Composition-based stats. Identities = 584/1404 (41%), Positives = 796/1404 (56%), Gaps = 154/1404 (10%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M KR R + K +V+ +P+LL IQ S++ F+E GL+ F + PI+ Sbjct: 1 MFKPEQVGKRTRYTYAKINEVIKMPHLLDIQRKSYEWFLES------GLQNIFNDISPIK 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 SGN L + + LGEP +D+ EC+ R TY+APLRV +RLV + E DIKEQ Sbjct: 55 DNSGNLVLSFEGFSLGEPKYDINECKNRDATYAAPLRVNIRLVNNDPENM-----DIKEQ 109 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMTD GTF+ING ERVIVSQL RSPGV+++ + + G LY++ +IP R Sbjct: 110 EVFMGDFPLMTDTGTFIINGAERVIVSQLVRSPGVYYNKEID---TMGNRLYDSTVIPNR 166 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEI------- 232 G+W++ E D + + VRIDR RKLPAT+++RAL + T E ILDLF+ E Sbjct: 167 GAWIELETDASEVVAVRIDRNRKLPATVLVRALGWDTNESILDLFWNGKTDEDGLPVYDE 226 Query: 233 ------------RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLE 278 ++ +E+ + GE + + N ++ + R AR R Sbjct: 227 RIVRTLEKDTTQSADEALVEIYKKLRPGEPPTVESARNLFDNLFFDARRYDLARVGRYKL 286 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 + + + G+ +A+ +D TGE+I A +++ G ++++ + Sbjct: 287 NKKLGW----RQRMLGQTLAQPIVDPETGEIILDAGVQV-----------GEEQLDIVAN 331 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 + + G +E Y ++ Sbjct: 332 SHVFDGEGFAEF--------------------------------------------YIVN 347 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 G ++++D+I + L+++ +G G DDIDHLGNRR+R VGE Sbjct: 348 NDGVESKVICNNCNLPYDHRTVTREDMIANISYLLNLMDGAGHTDDIDHLGNRRLRCVGE 407 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQFR+GL R+ER V+ER+++ + +++ PQ +IN +P+ AA+KEFFGSSQLSQFMDQ Sbjct: 408 LLQNQFRIGLTRMERVVRERMTIQETESITPQALINIRPVVAAIKEFFGSSQLSQFMDQT 467 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSLS Y Sbjct: 468 NPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSNY 527 Query: 579 AQTNEYGFLETPYRKV-------------TDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 A+ NE+GF+E PYRKV V+D + Y++A EE IAQANS LD Sbjct: 528 AKVNEFGFIEAPYRKVEKVYGKGKDADKVVKVRVSDSVVYMTADEEEGMTIAQANSPLDA 587 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 EG+F + V CR + + D+VDYMDVS ++VVS+G ++IPFLE+DDANRALMGANM Sbjct: 588 EGYFTTEHVACRRGHDVLEVTPDKVDYMDVSPKEVVSIGTAMIPFLENDDANRALMGANM 647 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 QRQAVP LRA PLVGTGME A DSGV +A+ G V + I + + + Sbjct: 648 QRQAVPLLRAQAPLVGTGMEYTAATDSGVCVLAREAGKVVRCWGNEIHV------LRDSD 701 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 +D Y L K+ RSNQ+TC NQ P V+ G+ V +G VLADGP+TD GELALG N+ VAFM Sbjct: 702 GRVDTYRLNKFLRSNQSTCFNQKPIVNRGDHVVKGQVLADGPATDGGELALGYNVLVAFM 761 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PW GYN+ED+IL+SE + +ED +T+IHI+E C +RDTKLG EEIT ++PN G+ L L Sbjct: 762 PWEGYNYEDAILLSEELCKEDIYTSIHIEEYECDARDTKLGAEEITRELPNTGDDTLKNL 821 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE GI+ IGAEV GDILVGK TPKGET+LTPEE+LLRAIFG+K +V+D+SLRVP+G S Sbjct: 822 DEDGIICIGAEVHPGDILVGKATPKGETELTPEERLLRAIFGDKEREVRDTSLRVPHGES 881 Query: 926 GTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G V+DV+VFTR +G E ++ + + Q +K + G + V+ + Sbjct: 882 GKVVDVKVFTRENGDELQPGVNKLVRVYIAQKRKIHEGDKMAGRHGNKGVVSRVMRKEDM 941 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE------------------------ 1020 D P L L + N + L Sbjct: 942 PF-LPDGTPVQIVLN-PLGVPSRMNIGQVLETHLGWAVQGLGMKIKATDLHIQNVLKEAR 999 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 + ++++A R Q + L V + V V + K +KI Sbjct: 1000 TDASYWEQIDAIRDLYAQIEALEAKVSEDVTVNHFEENEQIITLK-----------TKIL 1048 Query: 1081 PIED--MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 + + + L +E D + Sbjct: 1049 KHVEKAAQKKLDAMGGEARFQELKAIEAKYNALHVEFFDSEEEAPEMDPALVEELEAISK 1108 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 K + + +K S D + + + G+ IATPVFDGA E ++ E Sbjct: 1109 VKNTLNNIHSAEEKRVEIRKELESLGYDFDKYGMPKPDVAGIHIATPVFDGAHEKDVFET 1168 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L + P G+ LYDGRTGE + VTVGY+YMLKL+HLVDDK+HARSTG YSLVTQQP Sbjct: 1169 LAIAGRPDDGKTVLYDGRTGEPMDNRVTVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQP 1228 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV G + EPG Sbjct: 1229 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKAYEKIVKGENIPEPG 1288 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +PESF VLLKE++S+G+++++ +E Sbjct: 1289 VPESFKVLLKELQSIGLDVKILNE 1312 >UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax=Bacteroidetes RepID=RPOB_CYTH3 Length = 1291 Score = 1103 bits (2852), Expect = 0.0, Method: Composition-based stats. Identities = 595/1381 (43%), Positives = 834/1381 (60%), Gaps = 145/1381 (10%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSG 64 + +RK F K ++ P L IQ+ SF+ F + D + GL F FPI Sbjct: 7 QNLRKSFAKTRSTVEYPDFLDIQVRSFKDFFQIDTPAENRFKEGLYKVFAENFPISDSRD 66 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 N L ++ Y + P ++V EC RG+TY+ PL+ KLRL +++ + EQEV++ Sbjct: 67 NFILDFIDYNIDTPKYNVDECIDRGLTYAVPLKAKLRLTCNDKDNEDFQT---IEQEVFL 123 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G IP MT+ G+FVING ERVIVSQLHRSPGVFF H++G LY+AR+IP++GSW+ Sbjct: 124 GNIPYMTERGSFVINGAERVIVSQLHRSPGVFFAQS---KHTNGTKLYSARVIPFKGSWI 180 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVP 243 +F D + +F IDR++K P T +LRA+ Y + + ILDLF E ++ + Sbjct: 181 EFATDVNNVMFAYIDRKKKFPVTTLLRAIGYGSDKDILDLFGLSEEVEATKANIKKAI-- 238 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 GR++ AR +R +D V + + Sbjct: 239 ----------------------GRKLAARVLRTWTEDFVDED------------TGEVVS 264 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD-HGPYISETLRVDPTNDRLSA 362 E++ + + + + + +SG K I + I TL+ D +N A Sbjct: 265 IDRNEVLLERDSIIKEEDINIIVESGSKSIILHREDVNIADYTIIYNTLQKDNSNSEKEA 324 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 + +IYR +R + P + A + NLFFS+ RYDL VGR + N+ L +L+K Sbjct: 325 VEQIYRQLRNTDAPDEQTARDIIHNLFFSDKRYDLGEVGRYRINKKLGSGMGSEVKVLTK 384 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 +DII+++K LI + N + VDDIDHL NRR+R++GE +QF VGL R+ R +KER+++ Sbjct: 385 EDIINIVKYLIGLINSRAVVDDIDHLSNRRVRTMGEQLYSQFSVGLARMARTIKERMNVR 444 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 D + P D+INA+ +S+ + FFG++QLSQFMDQ NPL+EITHKRR+SALGPGGL+RER Sbjct: 445 DNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRMSALGPGGLSRER 504 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV--VT 600 AGFEVRDVH THYGR+C IETPEGPNIGLI+SL V+A+ N GF+ETPYRKV DG+ V Sbjct: 505 AGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNSMGFIETPYRKVIDGIVDVK 564 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 ++ +L+A EE IAQAN+ D+ G+F+ D + R +G+ + + D+VD +D++T Q+ Sbjct: 565 NQPVFLTAEEEDGAHIAQANAMYDDNGNFISDRIKARYEGDFPVIAPDKVDLIDIATNQI 624 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 VSV ASLIPFLEHDDANRALMG+NMQRQAVP LR + P+VGTG+ER VA+DS +A+ Sbjct: 625 VSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLERRVAMDSRTLLIAEA 684 Query: 721 GGVVQYVDASRIVIKV---NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 GVV++VDA+ I ++ +ED + ++ I Y+L K+ R+NQ+TCIN P + GE V Sbjct: 685 DGVVEFVDANEIKMRYDLTDEDRLVSFDSDIITYSLIKFRRTNQDTCINLKPVIQHGERV 744 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 ++G VL +G +TD GELALG+N+ VAFMPW GYNFED+I++SE+VV++D FT+IHI+E Sbjct: 745 KKGQVLCEGYATDKGELALGRNLMVAFMPWQGYNFEDAIVISEKVVRDDIFTSIHIEEFE 804 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 RDTK G EE+T++IPNV E A+ LDE+GI+ GAE+ GDIL+GK+TPKGE+ TP Sbjct: 805 LEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRTGAEIKEGDILIGKITPKGESDPTP 864 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM------ 951 EEKLLRAIFG+KA DVKD+S++ P + G VID ++F+R +KD R +++ Sbjct: 865 EEKLLRAIFGDKAGDVKDASMKAPPSLRGVVIDTKLFSRPKKDKDLRIKSKKQVETIKGK 924 Query: 952 --------QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR--------- 994 + + +K + G+ + +++ GV+ + + Sbjct: 925 YSKDLLALREQMIEKLAALLDGQTSQGVKHKFGDEVISKGVKFSRKNIEANVFPDKNPYR 984 Query: 995 ---------------DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 D ++ +D++ + +L + Y ++E K + +R + G Sbjct: 985 DESNYNVQEEANLLGDLIIDNWTSDKKINENVLRLVKNYLTKRNETAGKFKRERFTLEVG 1044 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L G++++ KVY+A KR+++ GDKMAGRHGNKGV+++I EDMP+ E+GTPVDIVLN Sbjct: 1045 DELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVRDEDMPFLEDGTPVDIVLN 1104 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQI ET LG+A K +G K + ++ ++ A + V Sbjct: 1105 PLGVPSRMNIGQIYETLLGLAGKKLGRKYATPIFDGASEEEVINELRDAGLPTIGRTKLV 1164 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D ++ FD Sbjct: 1165 DG--------------------LSGNPFD------------------------------- 1173 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 +PVTVG +YM+KL HLVDDKMHARS G YSL+TQQPLGGKAQFGGQRFGEMEVWALE Sbjct: 1174 ---QPVTVGVIYMMKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALE 1230 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 A+GAA LQE+LTVKSDDV GR K Y+ IV G + P +PESFNVL+ E+R L + I L Sbjct: 1231 AFGAANILQEILTVKSDDVVGRAKTYECIVKGENLPRPNIPESFNVLVHELRGLALEITL 1290 Query: 1340 E 1340 Sbjct: 1291 H 1291 >UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria RepID=B2KEN1_ELUMP Length = 1270 Score = 1095 bits (2832), Expect = 0.0, Method: Composition-based stats. Identities = 599/1365 (43%), Positives = 825/1365 (60%), Gaps = 167/1365 (12%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSGNSELQ 69 +FG+ L +P LL +Q +SF F++ D GL+AAF VFPI++ G+ +L+ Sbjct: 5 NFGQISSKLSLPDLLDMQKESFVDFLQLDVAPTKRELKGLQAAFEDVFPIEAPDGSMKLE 64 Query: 70 YVSYRLGEPVF-DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 +V Y LG P + Q+ +R TYSAP++ +RL + +R+ G +K+ EQ+V + ++P Sbjct: 65 FVKYELGAPRYSTPQQAALRDGTYSAPMKAVMRLSVKKRD---GKLKEASEQDVTLCDLP 121 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSS-GKVLYNARIIPYRGSWLDFE 187 LMTD G FV NG ERV+VSQLHRSPG+ F+ D+ K S+ GK LY ARIIPYRG+W++F Sbjct: 122 LMTDAGCFVFNGAERVVVSQLHRSPGIIFEEDEEKKQSTLGKKLYVARIIPYRGAWIEFS 181 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 FD + L+VRIDR++K+ AT LRA T QI+ F++ E++ ++ Sbjct: 182 FDIMNALWVRIDRKKKVLATTFLRACGLETNAQIIQAFYDVEDVEVKPAEI--------- 232 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 + + G+ A D +D +T Sbjct: 233 -------------------------------------------DNVVGRYAADDIVDPAT 249 Query: 307 GELICAANMELSLD----LLAKLSQSGHKRIETLFTNDLDHGPYISETLR--VDPTNDRL 360 GE++ + + ++ + ++ + K+++ + N P I TL D Sbjct: 250 GEVLWNLDDKAAMPMDDKIFKEMVERKIKKVKIISGNPRQDDPGILATLENRKDQIRTSK 309 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSE-DRYDLSAVGRMKFNRSL---------- 409 A +IY+ MR + +E AE+ +NL F RYDLS VGR K N+ Sbjct: 310 EAQADIYKKMRGQDFVVKEQAEAFLDNLIFDNIRRYDLSYVGRYKINKKFASLFDIVENL 369 Query: 410 ----LREEIEGSGILSKDDIIDVMKKLIDIRNGKG-----------EVDDIDHLGNRRIR 454 + + LS +DII +K L+ + G+ + DDIDHLGNRR+R Sbjct: 370 KFKKFTKPTDKRRTLSAEDIIVTVKYLLALNAGEDAQKMYGEEIIFKTDDIDHLGNRRVR 429 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 +GE+ ENQ RVGL ++ + ++R++ +L + P+ ++NA+P+ A +K+FFG+SQLSQF Sbjct: 430 GIGELLENQIRVGLSQMAKTARDRMNK-ELASHTPRALVNAQPVQAIIKKFFGTSQLSQF 488 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 MDQ NPLSE+THKRR+SALGPGGL R+RAGFEVRDVH THYGRVCPIETPEGPNIGLI S Sbjct: 489 MDQINPLSELTHKRRLSALGPGGLNRKRAGFEVRDVHHTHYGRVCPIETPEGPNIGLITS 548 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV 634 L+ Y++ N+YG +ETPYRKV G VTD YL+A +E + ++AQ+N+ L + G D+V Sbjct: 549 LACYSKVNKYGLIETPYRKVNSGKVTDNFEYLTADQEDDLMVAQSNTPLTDSGKINTDMV 608 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 +CR + + + S +VDYMDVS QV+SV A+LIPFLEHDDANRALMG NMQRQ VP L Sbjct: 609 SCRVRSDYPIVSPSEVDYMDVSPLQVISVSAALIPFLEHDDANRALMGCNMQRQGVPLLL 668 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 + PLVGTG+E VA DSG T A + G V + A +I ++ E +IY+L Sbjct: 669 TEAPLVGTGIEHEVARDSGATISAAKPGRVVFAAADKIAVEPLEG------GAPEIYDLI 722 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 KY RSNQ+TCINQ P V G+ V++G VLADGP+ G LALG+N+ V FM W GYN+ED Sbjct: 723 KYKRSNQDTCINQRPLVKAGDIVKKGTVLADGPAMKDGFLALGKNLLVGFMSWEGYNYED 782 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 +ILVS ++V+ED FT++H+ E + +R+TKLG EEIT DIPN+G AL+ LD GIV Sbjct: 783 AILVSHKLVKEDVFTSVHLHEFSIDARNTKLGAEEITRDIPNIGAEALAHLDADGIVIPS 842 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 V GDILVGKVTPKGE QLTPEE+LL+ IFG+KA DV D+SLRVP G SG VI +VF Sbjct: 843 TVVEPGDILVGKVTPKGEQQLTPEERLLKVIFGKKADDVVDASLRVPPGTSGKVIGTRVF 902 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 R K+K E+ ++K + + + L+ L+ + + + +A+K + Sbjct: 903 VR----KEKLTKAEEKARIKALEDEKTTNLETLKEQRKLALTNIKDSNVKDAKKEE---- 954 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 E++ Y +L+ + E + QGD+LA V K VKV++ Sbjct: 955 -----------------ERINALYKKLEKRVLEDFEREMEFSKQGDELAVTVNKSVKVFI 997 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR++ GDK++GRHGNKGV++KI P EDMP+ +GTP+DIVL+PLG+PSRMN+GQ+ E Sbjct: 998 ASKRKLMVGDKLSGRHGNKGVVAKILPEEDMPFLPDGTPLDIVLSPLGIPSRMNVGQLFE 1057 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 T LG AAK +G + +RE I++A + Sbjct: 1058 TMLGWAAKNLGYNAATPVFDGPTEETVREEIKKAKKALIEKGVP---------------- 1101 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 + +I LYDGRTG+ FE VT+GYMY++K Sbjct: 1102 -------------------------EKHLPDDYCRITLYDGRTGQPFEEKVTIGYMYIMK 1136 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L HLV+DK+HARSTG YSL+T+QPLGGKAQFGGQRFGEMEVWA+E YGA YTLQE LTVK Sbjct: 1137 LIHLVEDKVHARSTGPYSLITRQPLGGKAQFGGQRFGEMEVWAIEGYGATYTLQEFLTVK 1196 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 SDD GRTKMY++IV G +PG+PESF VL+KE+++LG+++EL Sbjct: 1197 SDDFTGRTKMYESIVRGEAPQQPGVPESFKVLVKELQALGLSVEL 1241 >UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Tax=Bacteria RepID=RPOB_METI4 Length = 1289 Score = 1089 bits (2816), Expect = 0.0, Method: Composition-based stats. Identities = 607/1367 (44%), Positives = 828/1367 (60%), Gaps = 138/1367 (10%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSY 62 +K R +FGK + L +P L+ Q S+ F++ GL F VFPI+SY Sbjct: 2 NEKIQRINFGKIREGLSLPNLIEHQTKSYADFLQLSVAPQERKAEGLHGVFLEVFPIESY 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 G +L+YV+Y +GE F +C G TY+APL V RL E +KE++V Sbjct: 62 DGKVKLEYVNYEIGESKFSPIDCLRDGKTYAAPLYVTFRLKDEE---------GVKEEKV 112 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 YMGE+P+MT G+F+ING ERVIV+QLHRSPG+ F+S HS+GK LY+ RIIP RGS Sbjct: 113 YMGELPMMTPQGSFIINGAERVIVNQLHRSPGICFESSF---HSNGKTLYSFRIIPDRGS 169 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 WL+ FD D L+V +DRR+K R TT Sbjct: 170 WLEVAFDTNDLLYVYLDRRKK------RRKFLITTLLRALAAALSGPSSPLG----SGGD 219 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 E +R ++ + + ++ + T + +++ Sbjct: 220 EEIIRLFYTVEELNLSEGI--DEDKVATKVLVSEVKDPH--------------------- 256 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + ++ A ++ ++ +L G + I + D+ + + + L+ DPT D + A Sbjct: 257 --NPDVVLARAYEPVTRSVVRQLLDVGIQSISVV---DVQYDDTLIKCLKKDPTKDPVEA 311 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L EIYR +RPG+PPT A+ L + L RYDL VGR K N+ L + IL+ Sbjct: 312 LKEIYRRLRPGDPPTESNAKLLLKRLLLDPKRYDLGRVGRYKLNQKLNIQVDPDIRILTW 371 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 +D++ + LI +R G+G DDIDHLG+RR+R+VGE+ NQ R+GL R ER VKER++L Sbjct: 372 EDLVAATRYLIKLRKGEGITDDIDHLGSRRVRTVGELVANQCRMGLARTERLVKERMTLF 431 Query: 483 DLDT--LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 D++T + PQ +IN K +SA +++FF SQLSQ MDQ NPLSE+THKRR+SALGPGGL+R Sbjct: 432 DVNTEGMTPQKLINPKALSATIRDFFARSQLSQLMDQINPLSELTHKRRLSALGPGGLSR 491 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 ERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI +++ Y++ N+YG LETPYRKV +G VT Sbjct: 492 ERAGFEVRDVHPSHYGRICPIETPEGPNIGLIATMASYSRFNDYGILETPYRKVLNGKVT 551 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 +EI Y +A +E NYVIA AN+ + E+G ++ V R + E R++V+YMDVS +Q+ Sbjct: 552 NEIVYFTADQEENYVIAMANTAVSEDGTILDQRVAVRFRREFMEVEREKVEYMDVSPKQI 611 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 VSV A LIPFLEHDDANRALMG+NMQRQAVP ++ + P+VGTG+E VA D V++ Sbjct: 612 VSVAAGLIPFLEHDDANRALMGSNMQRQAVPLIQPEAPIVGTGIEERVARDIQAVIVSEV 671 Query: 721 GGVVQYVDASRIVIKVN----EDEMYPGEAGID----IYNLTKYTRSNQNTCINQMPCVS 772 G V V I++ E + + G + +Y L K+ RSN TCINQ P V Sbjct: 672 DGTVSSVTGKEIIVTPTGSPVEQKKKKSKQGSEREGIVYKLNKFMRSNAGTCINQKPIVK 731 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 G+ V++GDVLADGPST GELALG+N+ VAFMPWNGYNFED+I+VSERVV+ED FT+I+ Sbjct: 732 KGQVVKKGDVLADGPSTQNGELALGRNLLVAFMPWNGYNFEDAIIVSERVVKEDLFTSIY 791 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 I E V+RDTKLGPEEIT DIPNVG+ AL L GI+ +GAEV GDILVGK+TPK E Sbjct: 792 IDEFEIVARDTKLGPEEITRDIPNVGDEALKNLGPDGIIRVGAEVKPGDILVGKITPKSE 851 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE-EM 951 T+L PEE+LLRAIFGEKA+DVKDSSLRVP+G G V+DV+V + + ++ E + Sbjct: 852 TELAPEERLLRAIFGEKAADVKDSSLRVPSGTYGIVMDVRVSSGTARVRKEKINASEAKQ 911 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD------KLPRDRWLELGLTDE 1005 ++K+ ++ ++ + L L + +L+ + + ++ +P +R + L + Sbjct: 912 KIKEIEERYDQKEEELREELTQALSNILLNEKIPLDVVNVETGEIIIPANRKITKVLLRK 971 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKR-------------RKITQGDDLAPGVLKIVKV 1052 Q + + FE + +I G+D PG++K VKV Sbjct: 972 MAQAYDKIEIDPSPIRSKIFEIIGNFEAKFEQLRNDRELELDQIESGEDTEPGIIKQVKV 1031 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 ++A KR++ GDKMAGRHGNKGV+SKI P+EDMPY +GTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1032 FIANKRKLSVGDKMAGRHGNKGVVSKIVPVEDMPYLPDGTPVDIVLNPLGVPSRMNVGQV 1091 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 LETHLG+AAK +G + + + K+REF+ +A D T Sbjct: 1092 LETHLGIAAKKLGFNVATPVFDGVKEEKIREFLVKAGMDEDGKSILYDGRTGE------- 1144 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 +++ + V VG +YM Sbjct: 1145 ---------------------------------------MFN--------QRVVVGMIYM 1157 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +KLNH+V DK+HAR+ G YSLVTQQPLGGKAQ+GGQRFGEMEVWA+EAYGAAY LQE+LT Sbjct: 1158 MKLNHMVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWAMEAYGAAYILQELLT 1217 Query: 1293 VKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 VKSDDV GRT++Y++IV G + +E PESFNVL+KE++ L + + + Sbjct: 1218 VKSDDVQGRTRIYESIVKGENYLETTTPESFNVLIKELQGLCLEVNI 1264 >UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Tax=Aquificales RepID=RPOB_AQUPY Length = 1469 Score = 1087 bits (2810), Expect = 0.0, Method: Composition-based stats. Identities = 650/1465 (44%), Positives = 890/1465 (60%), Gaps = 161/1465 (10%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 RK FG+R ++L+ PYLLSI +SF+ F++ GLE FR+ FP + N Sbjct: 8 RKFFGRRTEILEPPYLLSIPKNSFENFVQLKVNPYKRKNVGLEHIFRTSFPFKDPDENFI 67 Query: 68 LQYVSYRLG--------------------------------EPVFDVQECQIRGVTYSAP 95 L+Y+ Y +G + F +EC+++G+TYSAP Sbjct: 68 LEYLGYEIGDWECNRCGYKPKDDLLGGWDVDCPECGAKLVYKEKFTPEECKLKGLTYSAP 127 Query: 96 LRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGV 155 LRV L+L + + ++VY GE+PLMTDNG+F+INGTER+I++QL RS GV Sbjct: 128 LRVMLQLKAKTKN----GYRTFPPRKVYFGEVPLMTDNGSFIINGTERIIINQLIRSSGV 183 Query: 156 FFDS--DKGKTHSSGKVLYNARIIPYRGSWLDFEFDP-KDNLFVRIDRRRKLPATIILRA 212 FFD +K K + ++LY A IIP +GS ++FE D + RIDR +KL A +LRA Sbjct: 184 FFDEKEEKQKDATITRILYRASIIPDKGSRVEFELSGATDLISARIDR-KKLSAISVLRA 242 Query: 213 LNYTTE-QILDLFFEKVIFEIRDNKLQM------ELVPERLRGETASFDIEANGKVYVEK 265 T IL F+E V I +K E PE L ++ K+ Sbjct: 243 FGLETAYDILKPFYEGVRKYIVKDKYLYDAETGEEFTPEDLEHHYIFAILKFKAKI---- 298 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 + + + E + +D+ E++ ++ + Sbjct: 299 ----AGFGTSKEREIIEERYIEEWEELV------RILDDERIEVLSVTSVPRENVI---K 345 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTND-RLSALVEIYRMMRPGEPPTRE----- 379 S G ++TL T+ ++V R L+E+Y+ +R E T E Sbjct: 346 SPYGKSLVDTLATDTSPRDADRRSPVKVPAEYTLRDYGLMEMYKKLRHIEALTMEIDSII 405 Query: 380 -AAESLFENLFFSEDRYDLSAVGRMKFNRSLLR--------------------------- 411 A F F RYDLS VGR+K N + Sbjct: 406 ERARVYFNVFFRDLKRYDLSRVGRVKINAKVHNIPKVLKPTDIDLLDNLPPLALAEDYGE 465 Query: 412 --------------------------EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 + + L D+I+++K LID+R+G+ + DDI Sbjct: 466 YKAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHGRVKKDDI 525 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVK 503 HLGNRR+RSVGE+ ENQ R+G+ ++E+ ++R + + L PQD IN + ++ A+ Sbjct: 526 AHLGNRRVRSVGELLENQARLGIAKMEKVFRDRSATIHPEQPDLKPQDFINPRYVTNAIA 585 Query: 504 EFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 +F + QLSQ++D NPLSE+THKRR+SALGPGGLTRE A FE+RDVHP+HYGR+CPIET Sbjct: 586 DFLKTGQLSQYLDNTNPLSELTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIET 645 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 PEG NIGL+ S +VYA+ NEYGFL TPYRKV +G VTD+I +L+A EE NYVIAQ ++ Sbjct: 646 PEGQNIGLVTSPTVYARVNEYGFLITPYRKVENGRVTDKIEWLAAYEEENYVIAQ-STPT 704 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 DEEG + V R K + L +QVDY+DVS +QV+S +SLIPFLEHDDANRALMG+ Sbjct: 705 DEEGRIKAEFVLARHKNDIRLVKPEQVDYIDVSPRQVISPSSSLIPFLEHDDANRALMGS 764 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY- 742 NMQRQAVP + PLVGTGME+ +A DS VAKRGGVV+ VD S+I+++VN +E+ Sbjct: 765 NMQRQAVPLIFTQAPLVGTGMEKKIARDSHAVVVAKRGGVVEEVDGSKIIVRVNPEEINL 824 Query: 743 --PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 P + GIDIY L K+ R+NQ TC+NQ P V GE VE+G ++ADG STD GELALG+++ Sbjct: 825 EDPLDIGIDIYELRKFERTNQKTCVNQRPIVKKGERVEKGQIIADGHSTDRGELALGKDV 884 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 VAFMPW GYNFED+I++SER+V+ED +T+IHI+EL +R+TK+G EEIT IP V E Sbjct: 885 LVAFMPWRGYNFEDAIVISERLVKEDVYTSIHIEELEVEARETKVGDEEITRQIPGVPER 944 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 AL+ LDE GIV +G V GDILVGKVTPKGET+LTPEEKLL+AIFGEK DVKD+SLR Sbjct: 945 ALAHLDEHGIVRVGTYVKPGDILVGKVTPKGETRLTPEEKLLQAIFGEKTKDVKDASLRC 1004 Query: 921 PNGVSGTVIDVQVFTRDGVE--KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 P GV G VIDVQVFTR G + KD A ++E +L+ +++L ++ +L +G+ ++ + Sbjct: 1005 PPGVEGIVIDVQVFTRKGGKAAKDMLAQKVEREELEALERELEKKKNLLMSGVEKVLKGL 1064 Query: 979 LVAGGVEAEKLDKLPRDRWLELG-------------------LTDEEKQNQLEQLAEQYD 1019 ++ + + + TDEE ++ ++ + Sbjct: 1065 ILGKKTDKDVKIGKKEIKKGTEITEEIFKEYSQYILARPENFFTDEELIKKIREIYTRSR 1124 Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 +K + K+ + + DL PGV+ +VKV++A KR+I+ GDKMAGRHGNKGVIS + Sbjct: 1125 TQIDMLQKVYQEKKETLLKRRDLPPGVITLVKVFIANKRKIKVGDKMAGRHGNKGVISVV 1184 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 P+EDMP+ +GTPVDIVLNPLGVPSRMN+GQILETHLG AAK +G KI M+++ ++ Sbjct: 1185 LPVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKELGKKIGEMIEKGRDRK 1244 Query: 1140 KLREFIQRAYDLGADVRQK-----VDLSTFSDEEVMRLAENL-RKGMPIATPVFDGAKEA 1193 + E+++ Y +G + + L++ S+EE + + ++G+P+ATP F+GA E Sbjct: 1245 AITEYLKEIYAVGDENGENAKFIEEFLNSLSEEEFWSVVRDYAQRGIPMATPAFEGADEK 1304 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 +KELLK LP SG+ LYDGRTGE F+ VTVGYM+MLKL H+VDDK+HAR+TG YSL Sbjct: 1305 AVKELLKKAGLPESGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDKIHARATGPYSL 1364 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 VTQQPLGG+AQFGGQR GEMEVWALEA+GAAYTLQEMLTVKSDDV GR+K+Y+ IV G + Sbjct: 1365 VTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDVEGRSKVYEAIVKGKY 1424 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIE 1338 PG+PESF VL++E++ L +N++ Sbjct: 1425 TYTPGIPESFKVLVRELKGLSLNVK 1449 >UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Tax=Bacteria RepID=RPOB_CHLPD Length = 1312 Score = 1086 bits (2807), Expect = 0.0, Method: Composition-based stats. Identities = 602/1398 (43%), Positives = 815/1398 (58%), Gaps = 180/1398 (12%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFPIQSYSGNSELQ 69 DF K V+D P LL +QLDSF FI+ GLE RS FPI G L+ Sbjct: 22 DFSKIQSVIDPPDLLKVQLDSFHNFIQDSVPLAKRRDQGLERVLRSAFPITDTRGLYLLE 81 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 Y+SY +P + V++C RG+TY L+VKL+L Y+ E E K+ +QEVY+G IP Sbjct: 82 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLS-YKDEPDEADWKETIQQEVYLGRIPY 140 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 MT+ GTF++NG ERV+V+QLHRSPGV F H +GK +Y+A+I+P RGSW++F+ D Sbjct: 141 MTERGTFIVNGAERVVVAQLHRSPGVVFSE---AIHPNGKKMYSAKIVPTRGSWIEFQTD 197 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 + +FV ID+++ T +LRA+ + ++ + F+ + + E+L G+ Sbjct: 198 INNQIFVYIDQKKNFLVTALLRAIGFAKDEDILGLFD-----LVEEVKITSAKKEQLIGQ 252 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 + DI +D TGE+ Sbjct: 253 YLASDI----------------------------------------------VDMQTGEV 266 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFT----NDLDHGPYISETLRVDPTNDRLSALVE 365 +A ++ D++ ++ +G+K + + + + I T+ D + AL Sbjct: 267 -VSARTAITEDIVDQIIAAGYKSVRVMKSFSGNDKGPDKSIIINTILNDNSATEEEALEI 325 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE---------- 415 +Y +R E P +AA S E FF++ +YDL VGR + + L +E E Sbjct: 326 VYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIRKKLSKEFEELHGYLDGQPE 385 Query: 416 --------------------------GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 +L+ DII V+ LI + NG+ EVDD+DHL Sbjct: 386 LKKLSDTIYEKILHTIQSFSDEPIGGDILVLTHYDIIAVIYYLIKLVNGQAEVDDVDHLA 445 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS 509 NRR+RSVGE QF +GL R+ + V+E+L+ D D + P D+INA+ +S+ V FF +S Sbjct: 446 NRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPSDLINARTVSSVVSSFFATS 505 Query: 510 QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 QLSQFMDQ NPL+E+T+KRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNI Sbjct: 506 QLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNI 565 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 GLI+SLSVYA+ N+ GF++TPYR VT+GVVTD + LSA +E N + + LDE Sbjct: 566 GLISSLSVYAEINDKGFIQTPYRVVTNGVVTDTVLMLSAEDEENKITVPVSIPLDENMKI 625 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 + V R+KG+ L + V+YMDVS Q+VS A+LIPFLEHDD NRALMGANMQRQA Sbjct: 626 AIESVQARTKGDYPLVPAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQRQA 685 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE-------MY 742 VP L A+ P+VGTGME VA DS +A+ G+V V A I ++ + D + Sbjct: 686 VPLLTAEAPIVGTGMESKVARDSRSVILAEGDGIVDDVTAEYIKVRYDIDADTDVRLSLL 745 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 + G+ Y L K+ RSNQ+TCI+Q P + +G+ V +GDVLAD ST+ GELALG+N+ V Sbjct: 746 DPDEGLKTYKLIKFKRSNQDTCISQKPLIHIGQRVSKGDVLADSSSTENGELALGKNVLV 805 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 AFMPW GYNFED+I++SER+V +D FT+IHI E RDTK G E+ T DI NV E AL Sbjct: 806 AFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSEDAL 865 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 LDE+GIV IGAEV DILVGK+TPKGE+ TPEEKLLRAIFG+K+SDVKD+S+ VP Sbjct: 866 RNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHVPA 925 Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE-----------AGL 971 G+ G VI ++F+R +IE ++ K K+ + L+ G+ Sbjct: 926 GMKGIVIKTKLFSRKKKVGLDIKEKIEILEKKYDYKEYDLRKKFLKRLKQLLEGKTSTGI 985 Query: 972 FSRIRAVLVAGGVEAEK-----LDKLPRDRWLELGLTD---EEKQNQLEQLAEQYDELKH 1023 +S +LVA + +P ++ E+ + L +++ Sbjct: 986 YSDKGKLLVAEDAVYDDSVLERFTAIPFLESIDFVKGVTQSEKVNENVMLLVKEFRLKLK 1045 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 + + + ++ K+ GD+L PG+ ++ KVY+A KR+IQ GDKMAGRHGNKGV+ KI PIE Sbjct: 1046 DLNDERDNEKYKLNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVVGKILPIE 1105 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP+ ENG PVDIVLNPLGVPSRMNIGQ+ ET LG A K +G K + ++++ Sbjct: 1106 DMPFMENGKPVDIVLNPLGVPSRMNIGQLYETSLGWAGKELGVKFKTPIFNGATYQEVQQ 1165 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 +++A ++DG + + Sbjct: 1166 ELEKAGLPSHGK----------------------------VSLYDGRTGEQFDDE----- 1192 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 VT+GY+YMLKL+HLVDDK+HARSTG YSL+TQQPLGGKA Sbjct: 1193 ---------------------VTIGYIYMLKLSHLVDDKIHARSTGPYSLITQQPLGGKA 1231 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESF 1323 QFGGQRFGEMEVWALEAYGAA L+EMLTVKSDDV GR K Y+ IV G + EPG PESF Sbjct: 1232 QFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPEPGTPESF 1291 Query: 1324 NVLLKEIRSLGINIELED 1341 NVL++E++ LG+ I ++D Sbjct: 1292 NVLVRELQGLGLEIRIDD 1309 >UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Tax=Chlamydiae/Verrucomicrobia group RepID=RPOB_PARUW Length = 1254 Score = 1074 bits (2776), Expect = 0.0, Method: Composition-based stats. Identities = 600/1362 (44%), Positives = 823/1362 (60%), Gaps = 159/1362 (11%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 R+ F + +++D+P L+ IQ+ S+ +F++ D GL+ F +FPI+SY + Sbjct: 8 RESFNDKEEIIDLPNLIEIQIKSYNQFLQADKFPDERENIGLQEVFTEIFPIKSYDEKTI 67 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++SY LG P ++ +EC RG+TY+ L+VK RL IKE+EVYMG I Sbjct: 68 LEFLSYNLGVPKYNPEECIRRGITYNVTLKVKFRLTDET---------GIKEEEVYMGTI 118 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF++NG ERV+VSQLHRSPG+ F+ ++ HS G V+Y+ RIIPYRGSWL+ Sbjct: 119 PVMTDKGTFIVNGAERVVVSQLHRSPGICFEQER---HSRGNVIYSFRIIPYRGSWLEGA 175 Query: 188 FDPKDNLFVRIDRRR---KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 FD D + + IDR++ K+ AT +RAL Y++ + E Sbjct: 176 FDTNDLIHIYIDRKKRRRKILATTFIRALGYSSNS---------------------DIIE 214 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 + GK++A+D +DE Sbjct: 215 EFFTTRKYKIKNEKEFA-----------------------------KLVGKILAQDVVDE 245 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 +G + A+ +L+ +L ++ +G I D D + + L DPT+ SAL Sbjct: 246 ESGLVFGKASEKLTTAMLKRIVDAGIDVIRI--AEDADETSPVIKMLAKDPTDSYESALK 303 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG---ILS 421 + YR +RPGEP T A S LFF RY+L VGR K N L E + L Sbjct: 304 DFYRKIRPGEPATLSNARSAIMRLFFDPKRYNLGRVGRYKLNSKLGCEINDEKLQTVTLD 363 Query: 422 KDDIIDVMKKLIDIRNG--KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 K+D+I +K LI +++G + +DDIDHLGNRR+RSVGE+ +NQ R+GL R+E+ ++ER+ Sbjct: 364 KEDVIGALKYLIMLKSGSEEASIDDIDHLGNRRVRSVGELIQNQCRIGLARMEKIIRERM 423 Query: 480 SLGDL--DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 +L D DTL P +++AK +S +K+FFG SQLSQFMDQ NP++E+THKRR+S+LGPGG Sbjct: 424 NLFDFSSDTLTPGKIVSAKGLSGVLKDFFGRSQLSQFMDQTNPIAELTHKRRLSSLGPGG 483 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI+SLS +A+ NE+GF+ETPYR V +G Sbjct: 484 LNRDRAGFEVRDVHTSHYGRICPIETPEGPNIGLISSLSSFAKINEFGFIETPYRIVREG 543 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VVTDEI Y++A +E VIAQA++ LDE F E + R KGE V +MDVS Sbjct: 544 VVTDEIEYMTADQEEQCVIAQASAPLDEYHMFAEPICWARYKGEQFETDTKNVTHMDVSP 603 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +Q+VS+ LIPFLEHDDANRALMG+NMQRQ VP L+ P+VGTG+E A DSG + Sbjct: 604 KQLVSIVTGLIPFLEHDDANRALMGSNMQRQGVPLLKPTAPIVGTGLEARAARDSGAVLI 663 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A GVV YVD +IVI +++ + Y L K+ RSN TCINQ P +G+ + Sbjct: 664 AHEDGVVDYVDGLKIVISPDDNRLEKR-----TYLLKKFIRSNAGTCINQRPLCHVGDKI 718 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 + GDV+ADGP+TD GE+ALG+N+ VAFMPW GYN+ED+I++SE++++ED +T+++I+E Sbjct: 719 KAGDVIADGPATDKGEVALGRNVLVAFMPWFGYNYEDAIIISEKLLREDYYTSLYIEEFE 778 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 +RDTKLG EEIT DIPNV E L L++ GI+ IGAEV GD LVGK+TPK ET+L P Sbjct: 779 LTARDTKLGKEEITRDIPNVSEETLRNLNDDGIIRIGAEVKPGDTLVGKITPKSETELAP 838 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG-VEKDKRALEIEEMQLKQA 956 EE+LLRAIFG+KASDVKD+SL P G G V+DV+VF+R + K L E +LK Sbjct: 839 EERLLRAIFGDKASDVKDASLIAPPGTEGVVMDVKVFSRRDRLSKTDDELVEEASKLKDI 898 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAE--------------------KLDKLPRDR 996 +++ L R+ A+L+ ++ L ++ Sbjct: 899 QREYKSNQAQLRTEKHERVGALLLNETAPGNIVHRRTAEIIVDEGDLITQDLIEALEKES 958 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-DLAPGVLKIVKVYLA 1055 +L + + + L Q+ Y+ E + + + + +GD DL PGV++ VKVY+A Sbjct: 959 VEDLLMPENDIYTTLRQILHDYEIALQTVETQYKTQLEFMRKGDTDLDPGVIRQVKVYVA 1018 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 KR++Q GDKMAGRHGNKGV+SKI P DMP+ G ++I+LNPLGVPSRMN+GQ+ ET Sbjct: 1019 SKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLSTGQTIEIILNPLGVPSRMNMGQLFET 1078 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 HLG+AAK G + + + + K+ E +++A D Sbjct: 1079 HLGIAAKHTGITVKSPVFEGFPEEKIWEMMKKAGLPEDGKFFLYDG-------------- 1124 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + FD + VGY+YMLKL Sbjct: 1125 ------CSGERFDNSVV----------------------------------VGYIYMLKL 1144 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 +HLV DK+HAR+ G YSLVTQQPLGGKAQ GGQRFGEMEVWA EAYGAA+ LQEMLTVKS Sbjct: 1145 SHLVADKIHARAVGPYSLVTQQPLGGKAQMGGQRFGEMEVWAAEAYGAAHLLQEMLTVKS 1204 Query: 1296 DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 DDV GRT++Y++IV G + ++ G PESFNVL+KE++ LG+N+ Sbjct: 1205 DDVAGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLNV 1246 >UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC1_9BACT Length = 1258 Score = 1058 bits (2736), Expect = 0.0, Method: Composition-based stats. Identities = 574/1368 (41%), Positives = 810/1368 (59%), Gaps = 149/1368 (10%) Query: 10 RIRKDFGKRPQVL--------DVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVF 57 R K + + ++P LL++Q+DSF F+++D Q GL+A F ++F Sbjct: 2 RKVKSYSRISGRFAELGIPEVEIPNLLAMQVDSFNDFLQKDIHPQRREKKGLQAVFENIF 61 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 P++ GN L+++ Y + + + ++EC+ R ++Y APL+ K+RL ++E KD Sbjct: 62 PLEDTKGNFLLEFIEYNVLQEKYSLEECRERNLSYQAPLKAKMRLSVFENREGVREHKDT 121 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 EQEV++GEIPL+T+ GTFVING ERVI+SQL RSPGVFF + H SGK LY+A++I Sbjct: 122 LEQEVFLGEIPLITEQGTFVINGAERVIISQLQRSPGVFFSEE---KHPSGKTLYSAKVI 178 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEKVIFEIRDNK 236 PY GSWLDF+ D D +FV ID+RRKLP T + RA+ + E + F++ +++ K Sbjct: 179 PYSGSWLDFDIDIHDVMFVHIDKRRKLPVTTLFRAIGISTNEDLRKTFYKSEKLNLKEAK 238 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 G DI G Sbjct: 239 -----------GRHLFADIYEKGN------------------------------------ 251 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 E I AN +++ L+ LS+ ++E + N + T+ DPT Sbjct: 252 ----------PEPIAMANEQITDSLIKFLSERKITKVEVIDYNYEIARKVLENTMAKDPT 301 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 ++ AL +IY ++RPGE EAA+ L + +FF+E RY+L VGR K N L Sbjct: 302 TNQEEALKKIYNLIRPGEDAPLEAAKQLVDRMFFNEKRYNLGEVGRYKINSRLGINVDPK 361 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 L+ +D + + K LI+I + + EVDDID+L NRR+R+VGE+ + Q+ +G+ V R ++ Sbjct: 362 IMTLTVEDFVYIFKTLINIYHDEDEVDDIDNLANRRVRTVGELLQEQYTIGMAMVARIIQ 421 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+++ ++D + D++N+ + + V+ FF + QLSQFM+Q NPL+ + HKR +SALGPG Sbjct: 422 ERMAISNIDEVTVHDLVNSNALISVVQSFFLTGQLSQFMEQTNPLAALRHKRALSALGPG 481 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI S ++Y++ N +GFLETPYRKV D Sbjct: 482 GLARERAGFEVRDVHSSHYGRICPIETPEGPNIGLIVSPAIYSRINHFGFLETPYRKVVD 541 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 G +TDE YL A +E Y+IAQ++ +LD+ ++++ R +GE S + V YMDV+ Sbjct: 542 GCITDEYEYLDASQEEKYIIAQSDVHLDDNRRITDEMIFARDRGEFVQVSPNLVHYMDVA 601 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 QQ+VSV A+LIPFLEHDDANRALMG+NMQRQAVP + PLVGTGME+ ++D+ A Sbjct: 602 PQQMVSVSAALIPFLEHDDANRALMGSNMQRQAVPLINPQAPLVGTGMEKIASMDTSSIA 661 Query: 717 VAKRGGVVQYVDASRIVIKV-NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 VA G+V V ++ I +K NE + + + +L K+ R+NQ+TCINQ P V +G+ Sbjct: 662 VAPYDGIVTKVTSAFIDLKPLNEKDEAYYLSTGNRIHLKKFVRTNQDTCINQRPIVRVGD 721 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 V++G ++DG + LALG N+ VAFMPW GYN+ED++++SE+V +ED T+I+I+E Sbjct: 722 TVKKGQPISDGACVEDNRLALGTNLMVAFMPWYGYNYEDAVILSEKVAREDTLTSIYIEE 781 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG-ETQ 894 L + R+ K G EE+ DIPNV AL LD++GI+ +G+ + GDI+VGKVTPK E Sbjct: 782 LEVLVRNVKNGREELAYDIPNVPAQALRNLDKTGIIRVGSVIHAGDIIVGKVTPKSVEID 841 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG---------------- 938 +PEE L+RA+FG++A D +SSL+ G+ G VIDV+VF+R Sbjct: 842 PSPEENLMRALFGDRAGDFTNSSLKAKPGMEGVVIDVKVFSRLEEGSDLEEENEDKIEKL 901 Query: 939 -VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR--- 994 E R +IEE + ++ L ++ + I + + + L ++ Sbjct: 902 KEELALRRSKIEEFKEEKLSAVLVGQIAKNIWDEKTNIPFIAPGKKITKQDLKRINFKKL 961 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 D +EL E Q+ + + + + + R +I GD+L GV K+VKVY+ Sbjct: 962 DLDVELVEDREVNDYIYSQIVLKIKQSLEQSDNIYKKSRERIKHGDELQYGVRKMVKVYV 1021 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR+I+ GDKMAGRHGNKGVIS I PIEDMP+ E+GTPVDIVLNPLGVPSRMNIGQI+E Sbjct: 1022 AKKRKIEVGDKMAGRHGNKGVISIIAPIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQIME 1081 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 THLG AAK +G ++ + + +++A D Sbjct: 1082 THLGWAAKTLGFEVETPIFDGASNEDIVSELRKAGLPEDGKTVLYD-------------- 1127 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 G+ +GE F+ VTVG +YM+K Sbjct: 1128 ---------------------------------GK-------SGEPFKERVTVGIIYMMK 1147 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 LNHLV DKMHARSTG YSL+TQQPLGGKAQ GGQR GEMEVWALEAYGAA L+EMLT+K Sbjct: 1148 LNHLVADKMHARSTGPYSLITQQPLGGKAQHGGQRLGEMEVWALEAYGAASVLEEMLTIK 1207 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 SDDV+GR +K I G++ PG+PESFNVL+ E++SLG +IE E Sbjct: 1208 SDDVDGRNNAFKAITRGDNPPPPGVPESFNVLISELKSLGFDIEFIKE 1255 >UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax=Planctomycetales RepID=RPOB_RHOBA Length = 1240 Score = 1027 bits (2656), Expect = 0.0, Method: Composition-based stats. Identities = 565/1366 (41%), Positives = 786/1366 (57%), Gaps = 156/1366 (11%) Query: 1 MVYSYT---EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAF 53 M + E IRK FG D+P L ++Q S+ F+++D GLE+ Sbjct: 1 MATTTQRRLEPTSIRK-FGTGLGQFDLPDLTALQTVSYAAFLQEDAASNARKDHGLESVL 59 Query: 54 RSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 R +FPI SY GN+ L+Y+ Y LG+P + +QEC+ +TY PLR+ LRL Sbjct: 60 REIFPIASYDGNTTLEYLYYELGKPRYTIQECRQLRLTYGRPLRIWLRL----------N 109 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 ++ E+EVY+G++P+M G F+ING ERV+VSQLHRSPGV F ++ T + + L + Sbjct: 110 REEPIEEEVYLGDLPIMLGGGEFIINGAERVVVSQLHRSPGVDFVLEQDTT--TDRKLPS 167 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN---YTTEQILDLFFEKVIF 230 R+IP RGSW++ KD L VRID+ K AT++LRA++ T +L F+E Sbjct: 168 CRVIPERGSWIEVNVTKKDALTVRIDQSGKFAATMLLRAMDPKYSTDADLLSAFYETGTI 227 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 ++ + K Sbjct: 228 KV-----------------------------------------------NGGKDATKIEN 240 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 IA V E GE+I A +++ +L + +G +E + DL P I T Sbjct: 241 KIAVDDVVYPSGHERAGEIIVEAGYKITTELSETICNAGVTSVEAM---DLPKVPLIFNT 297 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 L D T AL+ IY+ +RPG PP E A +LF+ F+ ++RY L VGR + NR L Sbjct: 298 LADDNTASHEEALLRIYQRLRPGNPPQLEKARTLFQEKFYDDNRYRLGKVGRFRLNRKLG 357 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKG--EVDDIDHLGNRRIRSVGEMAENQFRVGL 468 E L DD+I ++ LID+ + E+DDIDHLGNRR+R++ E+A + R G Sbjct: 358 LGVEETVMTLRPDDMIAAIRYLIDLFDADSGAEIDDIDHLGNRRLRTIDELASEELRKGF 417 Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 +++ R V+ER+S+ D + P+ +IN K +SAA+ FFG +LSQ +DQ NPLS++ H+R Sbjct: 418 LKLRRTVQERMSVKDAQDMTPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLSQLAHER 477 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+SALGPGGL R+RAGFEVRDVH +HYGR+CPIETPEG NIGLI+SL++YA ++YGFL Sbjct: 478 RLSALGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDDYGFLC 537 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 TP+RKV DG ++DE +L A EEG +A A++ + + + R + + + + Sbjct: 538 TPFRKVIDGKISDETVWLRADEEGESYVAPADTEVKDGALVPGPNMIARFRSDFEIVMPE 597 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 QV +MDV+ Q+V V A LIPFLEHDDANRALMG+NMQRQAVP L + P+VGTGMER V Sbjct: 598 QVSFMDVAPAQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGMEREV 657 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 A +S + A+R G V Y DA+RI E G D Y L KY N+ TC NQ Sbjct: 658 AKNSAMVVRARRAGKVTYADATRI------------EIGSDHYPLKKYQGLNERTCQNQK 705 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 P +++G+ VE+G ++ADG +T GELALG+N+ V FM ++G+N+ED+I++SE +V+ D + Sbjct: 706 PLITVGDKVEKGQIIADGAATQKGELALGRNVLVGFMSFDGFNYEDAIIISEELVRNDTY 765 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 T+IHI++ R+TKLG EE T DIPNV E AL LD++GIV G V GDILVGKV+ Sbjct: 766 TSIHIEDFDVEIRETKLGREEFTRDIPNVSEKALRNLDDTGIVQTGTYVKPGDILVGKVS 825 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD---GVEKDKRA 945 PK +T+LTPEEKLL AIFG DVK+ SL VP+G+ G VID Q F+R G ++ K Sbjct: 826 PKSKTELTPEEKLLHAIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLGEDERKAF 885 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR----------- 994 + + ++++ + L + L + P+ Sbjct: 886 ERELKQHETEGNEEIASTFESLIRDMEEASGVKLKDSTGTPLADGQDPKFVAERATSFRL 945 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + LE +E+++ + Q+ ++ +++ + K + +GD+L GVL++VK+Y+ Sbjct: 946 ELVLEQIEDEEKRKAAEKVHQTQWQNVEQAIDER-DRKLNSMKRGDELRSGVLQMVKIYI 1004 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR I GDKMAGRHGNKGVI+KI PIEDMP+ +GTP+ I+LNPLGVPSRMN+GQILE Sbjct: 1005 ATKRTISVGDKMAGRHGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILE 1064 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 THLG A +G + + +++ + + A + D T E Sbjct: 1065 THLGWAGAKLGFQALTPIFDGASESEINDCLAEAGLPAHGKIRLTDGRTGEPMEQETTVG 1124 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 + MLK Sbjct: 1125 -------------------------------------------------YIY-----MLK 1130 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L+HLVDDK+HARSTG YSL+TQQPLGGKA+FGGQRFGEMEVWALEAYGAAY LQE+LTVK Sbjct: 1131 LHHLVDDKVHARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVK 1190 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SDDV GRTK+Y+++V G + +E G P SF+VL EIR L +N++LE Sbjct: 1191 SDDVEGRTKIYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLE 1236 >UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 Tax=cellular organisms RepID=RPOB_PELPD Length = 1499 Score = 1022 bits (2642), Expect = 0.0, Method: Composition-based stats. Identities = 596/1161 (51%), Positives = 792/1161 (68%), Gaps = 39/1161 (3%) Query: 210 LRALNYTTEQILDLFFEKVIFEIR--DNKLQMELVPERLRGETAS--FDIEANGKVYVEK 265 R L I F + ++ + +++ +E+ G+ + + ++ Sbjct: 341 FRLLFIDNLHITSSFRDTLLMDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNP 400 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYI---AGKVVAKDY-IDESTGELICAANMELSLDL 321 R + R + L P + A+D + L+ AA+ S + Sbjct: 401 ERYDLSAVGRLKLNFKLGLKVWPECTVLNAPCMFGAEDIASFDELFRLLLAADNRFSQYV 460 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 LA+L + K + + E L + N + + G +++ Sbjct: 461 LARLPEDFVK-VLRKHEPSQPVAEKLREQLLKELNNLVKDPDFY-QKELFTGLALSQQTV 518 Query: 382 --ESLFENLFFSEDRYDLSAVGRMK-FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 E F E+R + + R + L + S +DI+++++ LID++NG Sbjct: 519 ALTEAIEGGVFEENRRVIEVLRRNRMIFEDLYAPVVLTSPK---NDILEIVRYLIDLKNG 575 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPI 498 +G +DDIDHLGNRR+R+VGE+ ENQ+R+GLVR+ERA+KER+SL +++ LMP D+IN+KP+ Sbjct: 576 RGAIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQEVENLMPHDLINSKPV 635 Query: 499 SAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 SA VKEFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRV Sbjct: 636 SAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRV 695 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 CPIETPEGPNIGLI SLS YA+ N++GF+ETPYR V DG +T+E+ + SA+EE + IAQ Sbjct: 696 CPIETPEGPNIGLIASLSTYARINDHGFVETPYRIVLDGKLTNEVRFFSALEEEGHAIAQ 755 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 AN+ +D EG FV D V+ R GE L RD+++ MDV+ +Q+VSV A+LIPFLE+DDANR Sbjct: 756 ANAEVDAEGRFVNDYVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLENDDANR 815 Query: 679 ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 ALMG+NMQRQAVP LRAD PLVGTGMER VA DSGV+ +A+ GVV+ VDASRIV+K++E Sbjct: 816 ALMGSNMQRQAVPLLRADSPLVGTGMERIVAKDSGVSVIARHNGVVESVDASRIVVKIDE 875 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 E+ G+DIYNL K+ RSNQNTCIN P V +G+ V+R DV+ADGPSTD+GELALGQ Sbjct: 876 SEVDETGTGVDIYNLIKFARSNQNTCINNKPVVKVGDVVKRHDVIADGPSTDMGELALGQ 935 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG 858 N+ VAFMPW GYNFEDSILVSE++V++DR+T+IHI+E CV+RDTKLG EEIT+DIPN+G Sbjct: 936 NIVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEYECVARDTKLGKEEITSDIPNLG 995 Query: 859 EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSL 918 E AL LDESGI+ IGAEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+D+SL Sbjct: 996 EEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDTSL 1055 Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 VP GV GTVI +VF+R G +KD R IE+ + ++ +KD +E++I+ ++ + Sbjct: 1056 TVPPGVEGTVIGAKVFSRKGADKDTRTELIEKAEEEKLRKDEQDEIRIIRQSAEGKLHRL 1115 Query: 979 LVAGGVEAEKLDKLPRDRWLE--------------------LGLTDEEKQNQLEQLAEQY 1018 L+ + + D + D + + + ++ + Sbjct: 1116 LIGKSLSVKLEDGEGNLILAKGKEITAEALKSLSINDMGAISVSDDGQTDDNVSKVIDTL 1175 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 + + E K +K+ +GDDL PGV+K+VKVY+A+KR++Q GDKMAGRHGNKGV+S+ Sbjct: 1176 NRQIELIQSVFEDKIQKLRRGDDLPPGVIKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSR 1235 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 I P EDMPY E+G PV+IVLNPLGVPSRMN+GQILETHLG AAKGIG +I ML++Q Sbjct: 1236 ILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAAKGIGWRIEEMLQKQTSA 1295 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 L+ +++ Y D + EE+M + L++G+ +A+PVF+GA E +IK + Sbjct: 1296 ESLKAYLKDVY---GDDEVGTFIDGMDQEELMLVCRRLQRGVSMASPVFEGASEDKIKSM 1352 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L +SGQ+ L+DGR+G+ F+ VTVG MY+LKL+HLVDDK+HARS G YSLVTQQP Sbjct: 1353 LGKAGFHSSGQVTLFDGRSGDPFKHKVTVGVMYVLKLHHLVDDKIHARSIGPYSLVTQQP 1412 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGKAQFGGQR GEMEVWA+EAYGAAY LQE LTVKSDDV+GRT+MY+ IV G H +EPG Sbjct: 1413 LGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVSGRTRMYEAIVKGKHTLEPG 1472 Query: 1319 MPESFNVLLKEIRSLGINIEL 1339 +PESFNVL+KE++SL +++EL Sbjct: 1473 LPESFNVLIKELQSLCLDVEL 1493 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 289/1144 (25%), Positives = 489/1144 (42%), Gaps = 115/1144 (10%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 M YS +RK F K ++D+P L+ IQ +S+++F++Q+ GLEA FRSV Sbjct: 1 MAYSIANNHLLRKTFTKIKNIIDIPNLIDIQKNSYRRFLQQEGVSESRNNTGLEAVFRSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTV 114 FPI+ +S ++ L+YVSY L +P +DV EC RG+T++AP++VK+RLVI++ +E+ + Sbjct: 61 FPIKDFSESASLEYVSYSLSKPKYDVVECHQRGMTFAAPMKVKVRLVIWDTGKESGIRAI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 KDIKEQEVY GEIPLMTDNGTF+INGTERVIVSQLHRSPGVF+D DKGKTHSSGKVLY+A Sbjct: 121 KDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLDFEFD KD L+VRIDRRRK+PAT++L+AL Y+ EQ+L+ +++ + Sbjct: 181 RVIPYRGSWLDFEFDHKDILYVRIDRRRKMPATVLLKALGYSAEQLLNYYYKSEEIFLTG 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + E L + A D+ +G+V V+ R+ T IR++ + D+K + + + I Sbjct: 241 ETPSKSIDAELLTLQKALVDVVDPKSGEVIVKANRKFTKASIRKMVEHDIKAVPITFDSI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ + D ID +TGE++ N E++ + ++ G + LF ++L +TL Sbjct: 301 IGRYASSDVIDPATGEVLLECNEEVTAEKFDEIKAKGVESFRLLFIDNLHITSSFRDTLL 360 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 +D + AL+EIYR +RPG+PPT +++ +LFENLFF+ +RYDLSAVGR+K N L + Sbjct: 361 MDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNPERYDLSAVGRLKLNFKLGLK 420 Query: 413 EIEGSGILSKDDI-----IDVMKKLIDIRNGKGEVDDI-----------DHLGNRRIRSV 456 +L+ + I +L + D+ D + R Sbjct: 421 VWPECTVLNAPCMFGAEDIASFDELFRLLL---AADNRFSQYVLARLPEDFVKVLRKHEP 477 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS------Q 510 + + R L + + + D + + A+ E + Sbjct: 478 SQPVAEKLREQL---LKELNNLVKDPDFYQKELFTGLALSQQTVALTEAIEGGVFEENRR 534 Query: 511 LSQFMDQNNPLSE----------------ITHKRRISAL--GPGGLT-----RERAGFEV 547 + + + + N + + R + L G G + R V Sbjct: 535 VIEVLRR-NRMIFEDLYAPVVLTSPKNDILEIVRYLIDLKNGRGAIDDIDHLGNRRVRAV 593 Query: 548 RDVHPTHY--GRVCPIE-TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 ++ Y G V E ++ + +L + N ++ + Sbjct: 594 GELLENQYRIGLVRMERAIKERMSLQEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMD 653 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ---VDYMDVSTQQVV 661 + + E + L G L R+ E V ++ + Sbjct: 654 QTNPLSEVTHKR-----RLSALG--PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 706 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 + ASL + +D R + ++ + +E + A Sbjct: 707 GLIASLSTYARINDHG---FVETPYRIVLDGKLTNEVRFFSALEEEGHAIAQANAEVDAE 763 Query: 722 G--VVQYVDASR----IVIKVNEDEMY----PGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 G V YV A + I++ +E E+ + + + N + Sbjct: 764 GRFVNDYVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLENDDANRALMGSNMQ 823 Query: 772 SLGEPVERGDVLADGPSTDLG-ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 P+ + AD P G E + ++ V+ + +N VV+ + Sbjct: 824 RQAVPL----LRADSPLVGTGMERIVAKDSGVSVIA--RHN---------GVVESVDASR 868 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 I ++ +T G +I I + ++ +V +G V D+ + Sbjct: 869 IVVKIDESEVDETGTG-VDIYNLIKFARSNQNTCINNKPVVKVGDVVKRHDV-IADGPST 926 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDS---SLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 +L + ++ A + +DS S ++ T I ++ + + E Sbjct: 927 DMGELALGQNIVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEYECVARDTKLGKEE 986 Query: 948 IEEMQLKQAKKDLS--EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 I ++ L +E I+ G + +LV + P ++ L ++ Sbjct: 987 ITSDIPNLGEEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEK 1046 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY------LAVKRR 1059 + L K+ +++ + K+ + + R+ Sbjct: 1047 AGDVRDTSLTVPPGVEGTVIGAKVFSRKGADKDTRTELIEKAEEEKLRKDEQDEIRIIRQ 1106 Query: 1060 IQPG 1063 G Sbjct: 1107 SAEG 1110 >UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria RepID=C1A6N7_GEMAT Length = 1522 Score = 1006 bits (2601), Expect = 0.0, Method: Composition-based stats. Identities = 563/1273 (44%), Positives = 776/1273 (60%), Gaps = 88/1273 (6%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYSGNSELQ 69 F K +D+P+LL IQ +F+ ++ D GLE F+ +FPI N L+ Sbjct: 5 SFAKLETGMDMPHLLDIQTRAFESLLQLDAASQEREDVGLERVFKDLFPITDVHENFSLE 64 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 +V Y LGEP + V EC R +TYSAPL+ L+LVI+E ++I E+EVY+GE+PL Sbjct: 65 FVRYSLGEPKYTVAECIERDMTYSAPLKATLQLVIFEDTGDGKRPRNIIEKEVYLGELPL 124 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 +T+ GTFVING ERVIVSQLHRSPGV F+ TH +G+ L ++RIIP+RGSW++F D Sbjct: 125 LTELGTFVINGAERVIVSQLHRSPGVVFEES---THPNGQRLLSSRIIPFRGSWVEFTVD 181 Query: 190 PKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 D ++V ID+++K PAT +LRA Y IL LFF + ++ + + G Sbjct: 182 IHDVIYVHIDKKKKFPATALLRAFGYGENRDILRLFFAERDLDLTKKRE-TRNDQREVLG 240 Query: 249 ETASFDIEANGKV------------------------YVEKGRRITARHIRQLEKDDVKL 284 + DI G+V V +G +T + +L + +K Sbjct: 241 AIIAEDITLEGEVTAADAPKPKTKKAKAERERSEAELLVREGDELTEEVLNRLVRQGIKT 300 Query: 285 IEVPVEYIA-----------------GKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 +++ Y +++A+D ID+ TGE++ + L+ ++ ++ + Sbjct: 301 VKMFASYTQIDLRDEQDAIDRGEREVRRMLARDVIDQDTGEVVAEKDTTLTDAVIKRIRK 360 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 + ++ + I TL DPT AL +IY ++RPG+ P RE A+ E Sbjct: 361 ADIVKVFVFVASGRAESTLIKNTLAKDPTKAEEEALKQIYALLRPGDAPNRETAKQALER 420 Query: 388 LFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 LFFS RYDL VGR K N+ L + +L+K+D +++M++L+++ G+G+VDDID Sbjct: 421 LFFSPKRYDLGRVGRYKINQRLRLNTPMRTTVLTKEDFVEIMRQLVELHEGRGDVDDIDQ 480 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-DLDTLMPQDMINAKPISAAVKEFF 506 LGNRRIRSVGE+ NQF VGL R+ R VKER+S+ D + + D++NA+ +SA ++ FF Sbjct: 481 LGNRRIRSVGELIANQFSVGLSRMARLVKERMSINTDPEKISLDDLVNARTVSAVIQAFF 540 Query: 507 GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 566 GSSQLSQFMDQ NPL+E+THKRR+SALGPGGLTRERAGFEVRDVH + YGR+CPIETPEG Sbjct: 541 GSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSQYGRMCPIETPEG 600 Query: 567 PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE 626 PNIGLI SL+ +AQ N+ GF+ETPYR V +G VT EI +L A E + +IAQANS L+ + Sbjct: 601 PNIGLITSLACFAQVNDLGFIETPYRIVKEGRVTGEIVWLDANREEDAIIAQANSKLNPD 660 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 G FV+DLV R +G+ L +DYMDV+ +Q+VS+ A+LIPFLEHDDANRALMG+NMQ Sbjct: 661 GTFVDDLVLSRKRGDLPLEPPMNIDYMDVAPEQLVSIAAALIPFLEHDDANRALMGSNMQ 720 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI-------KVNED 739 RQAVP L P VGTG+E VAVDSG +A+R GVV V A I+I V++ Sbjct: 721 RQAVPLLNPATPFVGTGLEATVAVDSGAVIIARRPGVVTNVTADEIIIDAGLNQEAVDDG 780 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 +D Y L KY R+NQ+T INQ P V +G+ V +G+VLADG +T++G+LALG+N Sbjct: 781 RPLTRLGQLDRYRLKKYWRTNQDTAINQRPLVRMGQTVAKGEVLADGAATEMGQLALGRN 840 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + VAFMPW G+NFED+I++SER+V+ D F++IHIQEL RDTK G EEIT +IPNV E Sbjct: 841 VTVAFMPWYGHNFEDAIVLSERLVKFDVFSSIHIQELELHVRDTKRGQEEITREIPNVAE 900 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 +L LDE GIV IGA V GDILVGK+TPKGET+L+PEEKLL AIFGEKA DVKDSSL+ Sbjct: 901 ESLVDLDERGIVRIGAAVKAGDILVGKITPKGETELSPEEKLLTAIFGEKAKDVKDSSLK 960 Query: 920 VPNGVSGTVIDVQVFTRDGV---EKDKRALEIEEMQLKQAKKDLSEELQILEAGLF---- 972 V G+ G VIDV++F+R EKD+ E +L+ +K E++ E Sbjct: 961 VSPGMEGVVIDVKIFSRVEDQVVEKDRGERIGEVRRLEGEEKIRVNEVRDAELSRLLEGE 1020 Query: 973 ---------SRIRAVLVAGGVEAEKLDKLPR--DRWLELGLTDEEKQNQLEQLAEQYDEL 1021 + A+ + E LD L + +++ +++ + + E Sbjct: 1021 TVALALKAGTVEEAIGAGTTLTREILDGLRFATLDLKTFRVENKKANDRVRDILDAAAEE 1080 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 K E++ E + +I Q D+L PGV+++VKVYLA KR+I GDKMAGRHGNKG++++I P Sbjct: 1081 KARIEERAEDRIDRILQPDELPPGVIQLVKVYLAEKRKISVGDKMAGRHGNKGIVARIVP 1140 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 EDMP+ NG PVDIVLNPLGVPSRMN+GQILETHLG AAK + + + ++ Sbjct: 1141 EEDMPFLPNGRPVDIVLNPLGVPSRMNVGQILETHLGWAAKLLNFYAKTPVFEGANEREI 1200 Query: 1142 REFIQRAYDLGADVRQKV--DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL 1199 ++ A A + S + EV L +++ + V ELL Sbjct: 1201 GLLMKLAGLRWARETLMLGGPASDTTTAEVKALLSDIKPDRRLPDKV----------ELL 1250 Query: 1200 KLGDLPTSGQIRL 1212 +L G + Sbjct: 1251 GDANLNDLGGKAM 1263 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 140/413 (33%), Positives = 202/413 (48%), Gaps = 25/413 (6%) Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 E +++ ++ L + +K + G + ++ + + P D L Sbjct: 1099 DELPPGVIQLVKVYLAEKRKISVGDKMAGRHGNKGIVARIVPEEDMPF-LPNGRPVDIVL 1157 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKH----EFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 L + N + L + + + G + L+ + L Sbjct: 1158 N-PLGVPSRMNVGQILETHLGWAAKLLNFYAKTPVFEGANEREIGLLMKLAGLRWARETL 1216 Query: 1055 AVKRRIQPG----DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG----VPSR 1106 G D K ++S I P +P D+ D LN LG P Sbjct: 1217 ------MLGGPASDTTTAEV--KALLSDIKPDRRLP-DKVELLGDANLNDLGGKAMSPET 1267 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 + + +A+ I D+ ++ + + A + + S Sbjct: 1268 KALFTRVREFATQSARAIADRELDAVRAAISIHRGEASEVPEGAPAALEVLEGFAALSST 1327 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 E + R+ + M + D +A EL++L L +G++RL DGRTGE F PVT Sbjct: 1328 ETLQRIGQPALAAMLVGGK--DADVDAAASELIRLAGLTPTGKVRLRDGRTGETFTAPVT 1385 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG +YMLKL+HLVDDK+HARS G YSLVTQQPL GKAQFGGQRFGEMEVWALEAYGAA+T Sbjct: 1386 VGEIYMLKLSHLVDDKIHARSIGPYSLVTQQPLAGKAQFGGQRFGEMEVWALEAYGAAHT 1445 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 LQE+LTVKSDDVNGR+++Y+ IV G + EPG+PESFNVL+KE+++LGI + L Sbjct: 1446 LQEILTVKSDDVNGRSRVYEAIVKGQNLPEPGIPESFNVLVKELQALGIKVTL 1498 >UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Tax=Leptospira RepID=RPOB_LEPBP Length = 1228 Score = 956 bits (2471), Expect = 0.0, Method: Composition-based stats. Identities = 521/1357 (38%), Positives = 734/1357 (54%), Gaps = 191/1357 (14%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG-----QYGLEAAFRSVFPIQSYSG 64 R R +FGK + +P L+ +Q SF F++ + + GLEA FR FPI+S + Sbjct: 8 RNRVNFGKITDLNLLPNLIYVQKKSFDWFLQSEVKDPTKRLNQGLEAVFRESFPIESPNN 67 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 + ++Y Y LGEP D QEC+ +++ PL+ +RL+I + +I+EQ VYM Sbjct: 68 DMVMEYGHYVLGEPKRDPQECKDTDSSFAVPLKAVIRLIIKD-------TGEIREQVVYM 120 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G++P+MTD+GTF+ING ERV+VSQLHRSPG+FF D+ + ++AR+IPYRGSWL Sbjct: 121 GDLPVMTDHGTFIINGAERVVVSQLHRSPGIFFSYDQVRD------TFSARVIPYRGSWL 174 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVP 243 +FE D K L +IDR++K PAT++++A+ T E++L LF+ +I Sbjct: 175 EFEMDNKGILVAKIDRKKKFPATLLVKAMGMGTNEEVLRLFYGSSKMKIAGAN---PKDL 231 Query: 244 ERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 +RL G DI G+V ++ G +I +I L + VK Sbjct: 232 KRLIGRRTIADIINMETGEVMLDAGSKINEDNISILREMKVK------------------ 273 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 ++ + P + L D ND Sbjct: 274 ------------------------------EVDVIEFPKGKDNPVLINCLEKDGVNDYED 303 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-----G 416 A+ + + +MRPGEP T E AE+ + LFFS +DL VGR K N + Sbjct: 304 AVKKFHTIMRPGEPSTIENAEAELKRLFFSPKTFDLGIVGRYKINSKFEFNNPKEFSKAD 363 Query: 417 SGILSKDDIIDVMKKLIDI--RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 +L K DII+ ++ L+ + DDIDHLGNRRIRSVGE+ NQ ++G RVER Sbjct: 364 DRVLRKQDIIETVRYLVMLMSEAENYYPDDIDHLGNRRIRSVGELIANQLKLGFSRVERV 423 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 +KER+++ + + PQ +I+ KPI+A + EFFGSSQLSQFMDQ NPL+E+THKRR++ALG Sbjct: 424 IKERMTVQEPEQQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLNALG 483 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI S+S +A+ N+YGF+ETPYR V Sbjct: 484 PGGLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSFARVNDYGFIETPYRLV 543 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 +G V ++ YL+A +E + +AQ+NS +DE+G F L++ R +G+ S ++ YMD Sbjct: 544 KNGKVQKQVEYLTADKEEYHYMAQSNSTVDEKGEFTSKLISTRHRGDFPFRSPAEIQYMD 603 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 ++ QVVSV +LIPFLEHDDANRALMG+NMQRQAVP L + P VGTGME A D+GV Sbjct: 604 LAPLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLTEEAPFVGTGMEARAAYDAGV 663 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 VAK+ GVV VDA+ + IK ++ + I Y L K+ ++NQ TC NQ P VS+ Sbjct: 664 CIVAKKDGVVSKVDATGVWIKEDQSKE------IVHYPLIKFKKTNQGTCFNQKPNVSM- 716 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 +T G+++ RV NG +L+S E +F + + Sbjct: 717 -----------LHTTTGGKVSKVSKERVEVTTPNGEKETHELLLS----DEVQFHAVVKE 761 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 G GE G + G +L Sbjct: 762 GQEVGIGAPVAGQII-------KGEKYGDF---------GQILQKGTVLAN-GPSTDAGY 804 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 L +L A + + +D+ L +S +I VF+ +E+ + ++ + Sbjct: 805 LALGRNVLVAFMPWEGYNFEDAIL-----ISERIIKDDVFSSIHIEEFEIQARETKLGQE 859 Query: 955 QAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 Q +D+ +E ++ G + +LV + D P + L + Sbjct: 860 QITRDIPNLSDKAFRDLDESGVIRVGAEVKPGDILVGMVTPKGETDLTPEYKLLHSIFGE 919 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + K+ + L + KR GD+LA GV ++VKVY+A KR++ GD Sbjct: 920 KAKEVRDSSLRMPNGFEGTVID----IKRYSRETGDELAAGVEEMVKVYVARKRKLLVGD 975 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGV++++ EDMPY E+G+PVDIVLNPLGVPSRMN+GQI ET LG AAK + Sbjct: 976 KMAGRHGNKGVVARVMAQEDMPYMEDGSPVDIVLNPLGVPSRMNLGQIFETQLGFAAKKL 1035 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G + + +F ++A Q D Sbjct: 1036 GINFETPVFDGASEGDVNDFCKKAGLPENSKFQLYDG----------------------- 1072 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 +G+ + V GY+YMLKL HLVDDK+H Sbjct: 1073 ---------------------RTGEKFI----------NQVFCGYIYMLKLAHLVDDKIH 1101 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARSTG YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGA++TLQE+LT+KSDD+ GR ++ Sbjct: 1102 ARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASHTLQELLTIKSDDMLGRARI 1161 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 Y+ IV G H ++PG+PESFNVL++E+R L ++I ++D Sbjct: 1162 YEAIVKGIHSIKPGIPESFNVLVQELRGLALDIIIKD 1198 >UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria RepID=C6HVV1_9BACT Length = 1729 Score = 949 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 534/1120 (47%), Positives = 719/1120 (64%), Gaps = 90/1120 (8%) Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE------YIAGKVVAKDYI 302 ET S E V V ++ +++D +I + E + V + Sbjct: 662 ETLSQISEHKKLVLVRSKHEDLRVLVQSSQENDGNIITLTTEKPVTMQDLQSYVHMFELE 721 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS- 361 + G + L +S + +++ + E L + R+ Sbjct: 722 EPKKGNPYKKEGELFEFEDLDVAKKSKKNNVSLVYSATNKSHDLLLELLDLAKNPHRIES 781 Query: 362 --ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+VEIY+ +RPGE P E A F+ FF+ RYDLS+VGR+K N L E + + Sbjct: 782 DPAVVEIYKKIRPGEVPHVETARQFFDQSFFNSKRYDLSSVGRLKLNSKLGIRESLSNRL 841 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+K DI++V++ ++D+ KGE+DDIDHLGNRR+RSVGE+ ENQFR+GLVR+ERA+KERL Sbjct: 842 LTKSDIVEVIRYMVDLLENKGEIDDIDHLGNRRVRSVGELLENQFRIGLVRMERAIKERL 901 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 +LGD ++++ D IN KP++A +KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGLT Sbjct: 902 NLGDPESVISSDPINVKPVTAIIKEFFGSSQLSQFMDQTNPLAEVTHKRRLSALGPGGLT 961 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N++GF+E+P R V +G+ Sbjct: 962 RERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLATFARVNDFGFIESPVRVVENGIA 1021 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 EI YLSA++ Y+IAQA++ LD+ G E V+ R KG+ S DQV Y+DV+ QQ Sbjct: 1022 KPEIVYLSAMDGDKYIIAQASTKLDQNGALTEPQVSARFKGDFISVSPDQVQYIDVAPQQ 1081 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VSV +LIPFLEH+DANRALMG+NMQRQAVP LR PLVGTGME+ VA DSG A Sbjct: 1082 IVSVATALIPFLEHNDANRALMGSNMQRQAVPLLRPSAPLVGTGMEKVVARDSGYVIYAT 1141 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 G V +D + +K G+ Y L K+ RSNQNTC+NQ +S ++ Sbjct: 1142 EDGEVVKIDGTSFTVKY-------KNTGLKTYPLIKFRRSNQNTCLNQKVLLSPRTKFKK 1194 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 GDVL DGPST+ G+LA+GQN+ VAFMPW GYNFED+IL+SER+V++D FT+IHI+E Sbjct: 1195 GDVLVDGPSTERGDLAMGQNVLVAFMPWGGYNFEDAILISERLVRDDMFTSIHIEEFELE 1254 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 +R+TK G EEIT DIPN+ + AL LDE GIV IGAEV GDILVGKVTPK ETQLTPEE Sbjct: 1255 ARETKQGKEEITRDIPNLSDEALKNLDEGGIVRIGAEVKPGDILVGKVTPKAETQLTPEE 1314 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 +LLRAIFG+K+++ KD+SL VP G+ G V+DV++ +R G+EK++ + Sbjct: 1315 RLLRAIFGDKSANWKDASLTVPAGIEGIVVDVKILSRKGIEKEEAVMAAPMHGQDIGSLT 1374 Query: 960 LSEELQILEAG------------LFSRIRAVL--VAGGVEAEKLDKLPRDRWLE------ 999 + + ++ + +L G V +K +L D + Sbjct: 1375 HAYQGELRKVEEEKKEKIKAFLLGKVIKEDILDAETGDVILKKKRRLTTDTLEKLADYSA 1434 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + L+D+++Q++L+ + + E + + + + ++ +GD+LAPGVLK+VKVY+A+KR+ Sbjct: 1435 ITLSDQKEQDELQAIESRTKEKIEAIQMRHDERIGRLKKGDELAPGVLKLVKVYVAMKRK 1494 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 + GDKMAGRHGNKGV+S+I P+EDMP+ +GTPVDI+LNPLGVPSRMN+GQILETHLGM Sbjct: 1495 LSVGDKMAGRHGNKGVVSRIVPVEDMPFLPDGTPVDIILNPLGVPSRMNVGQILETHLGM 1554 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 AA+ +G + + +++ +++ + VD Sbjct: 1555 AARALGLHVATPVFDGATEEEIKAMLKKGGISETGQTRLVD------------------- 1595 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 G+ GE FERPVTVG MYM KL+HLV Sbjct: 1596 ----------------------------GKT-------GEVFERPVTVGVMYMFKLHHLV 1620 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWAL+AYGAA TLQE LTVKSDDV+ Sbjct: 1621 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASTLQEFLTVKSDDVS 1680 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GR++MY+ IV G + ++PG+PESFNVL+KE++SL ++IEL Sbjct: 1681 GRSRMYEAIVRGENYLDPGLPESFNVLIKELQSLALDIEL 1720 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 113/269 (42%), Positives = 169/269 (62%), Gaps = 15/269 (5%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNS 66 +R +FG Q +DV L+ IQ S+++F++ D GL++AF SVFPI+ Y+GN Sbjct: 8 VRHNFGGSQQFIDVQDLIEIQKRSYERFLQLDVPPSLREDSGLQSAFLSVFPIEDYNGNY 67 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV-----------K 115 + ++ Y LGEP ++ EC RG+TY+APL++K+R+ E+ K Sbjct: 68 RIDFIEYSLGEPKYEEYECLERGMTYAAPLKIKIRIAALEQNKEIDKTSPLSKEPSFSVK 127 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +KE+E Y+G++PLMT GTF+INGTERV+VSQLHRSPGVFF DK KT +G L+ +R Sbjct: 128 YMKEEEKYLGDLPLMTTKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRLTGTPLFTSR 187 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 IIPYRGSW+DFE+D KDNL+VRIDR++K PATI+L+A+ T+ ++ ++ +I+ Sbjct: 188 IIPYRGSWIDFEYDQKDNLYVRIDRKKKFPATILLKAMGMTSADVVKEYYNIETLQIKPG 247 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVE 264 ++ G T F ++ + + Sbjct: 248 APELYAYFPIEPGSTLPFQLKDHDGLVFR 276 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 20/197 (10%), Positives = 51/197 (25%), Gaps = 9/197 (4%) Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 VF D + + Y+ + ++E + + + K+ + + Sbjct: 57 VFPIEDYNGNYRIDFIEYSL----GEPKYEEYECLERGMTYAA-PLKIKIRIAALEQNKE 111 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 L + +++ + + +P L +F I +V V + R Sbjct: 112 IDKTSPLSKEPSFSVKYMKEEEKYLGDLP--LMTTKGTFIINGTERVVVSQLHRSPGVFF 169 Query: 275 R--QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 + + I + D+ + L + + L G Sbjct: 170 SHDKTKTRLTGTPLFTSRIIPYRGSWIDFEYDQKDNLYVRIDRKKKFPATILLKAMGMTS 229 Query: 333 IETLFTNDLDHGPYISE 349 + + I Sbjct: 230 ADVVKEYYNIETLQIKP 246 >UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Tax=Bacteria RepID=RPOB_SULMW Length = 1328 Score = 911 bits (2353), Expect = 0.0, Method: Composition-based stats. Identities = 522/1354 (38%), Positives = 771/1354 (56%), Gaps = 135/1354 (9%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI----EQDPEGQYGLEAAFRSVFP 58 + +T++K I +F + P L IQ+ SF F G F FP Sbjct: 12 FPFTKEKTI--NFASVRNKISYPDFLDIQIKSFTNFFCINYTYKNISNKGFYKVFIEYFP 69 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK--- 115 I + ++SY++ +P++ ++EC RG+TY+ +R + ++ + K Sbjct: 70 ISDSKNKFIIDFISYKIYDPLYSIEECIKRGLTYNVYIRARFKIYRTRKRKITIENKRTK 129 Query: 116 --DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 + Q+VY G P MT +G+F+ NG+ERVIVSQLHRSPGVFF + + Sbjct: 130 YFETIYQDVYFGTCPYMTPSGSFIFNGSERVIVSQLHRSPGVFFGQY---DIPNLPKISY 186 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEI 232 ARIIP +GSW++ D + +++ +D +++LP T +LRAL YT + IL++F I Sbjct: 187 ARIIPLKGSWIELSTDINNVMYIYLDIKKRLPITTLLRALGYTRDIDILNIFNLAEEVNI 246 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + L GR + AR + + + + I Sbjct: 247 NKVNYKKFL------------------------GRTLAARIFKTSYQKFEENDILLERNI 282 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 K D I ++I + + I TL+ Sbjct: 283 KLKKYHIDIILYYKIKVISLYKKNEKNE-------------------KNLYYSIIHNTLK 323 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 DPTN + A + IY+ ++ P + A+ FF E L VGR K N++L + Sbjct: 324 KDPTNSQKEANIYIYKELKDSFPKNDKKAKLFINKFFFDE--THLGEVGRYKLNKTLKLD 381 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 IL+ +DII +++ LI + N K EVDDID+L NRR+++VGE Q+ +G+ RV Sbjct: 382 FPLKDQILNIEDIISIIENLIALCNNKKEVDDIDNLANRRVKTVGEQLYTQYTIGIARVS 441 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 R +KER+++ D +TL P ++IN+K +++ + FFG+ +LSQFMDQ NPL+E+THKRRIS+ Sbjct: 442 RIIKERINVKDNETLTPLELINSKTLTSVINSFFGTDELSQFMDQTNPLAEMTHKRRISS 501 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGL+RERAGFE+RDV+ +HYGR+CPIETPEGPNIGLI+SL V+A+ N GF+ETPY Sbjct: 502 LGPGGLSRERAGFEIRDVNYSHYGRLCPIETPEGPNIGLISSLCVFAKINSMGFIETPYF 561 Query: 593 KVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 KV G V Y+S+ +E +I QAN+ L+ + +++ + R + + + ++ Sbjct: 562 KVKKGKVVINEAPIYISSDQEYGKLITQANAILNYKTGVLKNNIIVRVNADFPMVNYKKI 621 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +Y+DVST Q+ S+ ASLIPFLEHDDANRALMG+NM RQ+VP L P+VGTG+E+ +A Sbjct: 622 NYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGLEKHLAQ 681 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP---GEAGIDIYNLTKYTRSNQNTCINQ 767 A+ G+V+ VDA+ I +K E E I Y L K+ ++NQNTC+N Sbjct: 682 YVNALIYAEGDGIVESVDANNIKVKYFNSEKEKLLSFEKRIKTYKLIKFRKTNQNTCLNI 741 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V G V +G VL +G +T G+LALG+N++VAFMP+ GYNFED+I++SE+VV+ED Sbjct: 742 RPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDAIVISEKVVREDW 801 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI E + RDTKLG EE T DIPN E KLD+ GI+ IG+EV GD+L+G++ Sbjct: 802 FTSIHIDEYSLEVRDTKLGMEEFTFDIPNFNEENKKKLDKYGIIKIGSEVKPGDVLIGRI 861 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 TPK E + EE L+AIFG+K +K++SL+ + + G VID +++++ ++D++ Sbjct: 862 TPKKEGYPSSEENFLKAIFGKKVGTIKNTSLKADSSLFGVVIDTKIYSKFSSKEDEQKQF 921 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR------------- 994 + + K+L ++L L + + G + + + +P+ Sbjct: 922 QIKKLNNKFMKNLKLLRKLLINKLILVLEGSVSEGILNSSYKEIIPKGKILNKLNLKKLL 981 Query: 995 ---DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 + + + ++ K N + ++ + Y +E + KL+ K+ ++ GD++ G++KI K Sbjct: 982 KNQEIIYQNWVNNKYKNNLVFKIIKFYYLKINELKIKLKRKKNRLLIGDEITSGIIKIAK 1041 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V +A KR+++ GDKM+GRHGNKG++++I EDMPY E+GT VD+VLNPLGVPSRM Sbjct: 1042 VLIAKKRKLKVGDKMSGRHGNKGIVARIVKEEDMPYLEDGTSVDLVLNPLGVPSRM---- 1097 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 +G +L Sbjct: 1098 -----------NLGQIYETILGWA------------------------------------ 1110 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + G+ +TP+FDGA EI + + +LP+ G L+DG TGE+F++PVTVG +Y Sbjct: 1111 ---GEKLGINFSTPIFDGASIEEISKYTDIANLPSFGNTYLFDGETGEKFDQPVTVGVIY 1167 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 MLKLNH+VDDKMHARS G YSL+TQQPLGGK++FGGQR GEMEVWALEA+GAA L+E+L Sbjct: 1168 MLKLNHMVDDKMHARSIGPYSLITQQPLGGKSKFGGQRLGEMEVWALEAFGAANILREIL 1227 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 TVKSDDV GRTK Y+ IV PG+PESF+V Sbjct: 1228 TVKSDDVKGRTKTYEAIVKRETIPNPGIPESFHV 1261 >UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira RepID=C0QWX6_BRAHW Length = 1173 Score = 865 bits (2235), Expect = 0.0, Method: Composition-based stats. Identities = 475/1347 (35%), Positives = 672/1347 (49%), Gaps = 242/1347 (17%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSGNSE 67 R +F + V++ P LL+IQ +S++ F+++D GL+ S+FPI + + + Sbjct: 29 RVNFSRTASVIEPPDLLAIQKESYESFLQKDVPENKRKNEGLQEVLTSIFPIVASNEKMQ 88 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 ++++SY +GEP +E + R TY+ P ++K++L + + E I EQE+++G+I Sbjct: 89 IEFISYSIGEPKITEKEARRRDKTYAYPFKIKVQLTVRDPER-------IIEQEIFVGDI 141 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P MTD GTF++NG ERVIVSQ+HRSPGV F+ S ++ A+IIP RG+WL+FE Sbjct: 142 PAMTDRGTFIVNGAERVIVSQIHRSPGVVFNR------SDRDAMFVAKIIPDRGTWLEFE 195 Query: 188 FD-PKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPER 245 D KD ++VRIDR++KLP T+ LRA+ T E+IL LF+ + I KL E E Sbjct: 196 LDTKKDIMYVRIDRKKKLPVTVFLRAIGITTNEEILKLFY--EVDNISLEKLSDENSKEA 253 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L G + + Y E+ Sbjct: 254 LIGRRSYSTV---------------------------------------------YDTEN 268 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 E+I ++ +L +L SG K I L + I TL D T ++ A + Sbjct: 269 PDEIILNPGELINPNLAERLLMSGIKEISVLNMEAIKDNVTIINTLDKDTTKNQEEACTK 328 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 IY ++RPGEP E +L F Y L VGR K N+ L E E +L DI Sbjct: 329 IYNVIRPGEPALIENVVRTCNDLVFDPKSYALGDVGRYKLNKRLNFPESEQDKVLRHKDI 388 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 I+ ++ LI + + ++DDIDHLGNRR+RSVGE+ Q + G R+ER KER+ + D++ Sbjct: 389 IETIRFLIKVFINEEQLDDIDHLGNRRVRSVGELLSIQIKAGFTRMERIAKERMQMQDME 448 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + PQ +++ K I A +KEFFG++QLSQFMDQNNPLSEITHKRR++ALG GGLTR+RAGF Sbjct: 449 AVTPQSLVSIKLIQAVIKEFFGTNQLSQFMDQNNPLSEITHKRRLNALGQGGLTRDRAGF 508 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 EVRDVH THYG++CPIETPEGPNIGLI SL+ YA+ N++GFLETPYRKV DG VTDEI Y Sbjct: 509 EVRDVHHTHYGKICPIETPEGPNIGLIVSLATYAKINKHGFLETPYRKVVDGKVTDEIEY 568 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 L+A +E Y IA AN+ L+E+G F ++L++ R + E S D Sbjct: 569 LTAHDEEKYHIADANAPLNEDGTFKDNLISTRFRSEFPYSSPD----------------- 611 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 Q Q + S V+ ++ Sbjct: 612 --------------------QVQYMDV-------------------SPQQIVSLSSSLIP 632 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 +++ + M + P V G + Sbjct: 633 FLEHDDANRALMGSNMQRQSVP---------------LLYPEAPIVGTG---VEAKICQP 674 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 G + G+ ++V +N I I+ S D Sbjct: 675 GTGIAVHAKRAGKVIKVV------HNE------------------IVIKPTKQNSDDDLD 710 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 E + N +V +G V G L+ +L +L A Sbjct: 711 VYELVKYQRTNQDTNYHQ----RPVVNVGDVVKAG-GLLADGPATDHGELALGRNVLAAF 765 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS---- 961 + + +D+ L ++ VFT +E+ ++ + +D+ Sbjct: 766 MIFEGYNFEDAILLSR-----RLVQEDVFTSIHIEEFSVEARETKLDKENITRDIPNVSD 820 Query: 962 ------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 +E I+ G + +LV + + P R L ++ + + L Sbjct: 821 AAFKNLDERGIVRIGAKVKAGDILVGKVTPKGETEITPEYRLLHSIFGEKARDVKDTSLR 880 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 + + + ++ ++ GD+L PGV ++VKV+LA KR IQ GDKMAGRHGNKGV Sbjct: 881 VPHGKDGTVIDVRVYSR----ENGDELKPGVEEVVKVFLAKKRIIQEGDKMAGRHGNKGV 936 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 +++I PIEDMP+ E+GTPVDI LNPLGVPSR IG I +L Sbjct: 937 VARIMPIEDMPFLEDGTPVDICLNPLGVPSR---------------MNIGQVIEMLLGW- 980 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 + G+ A PVF+G KE + Sbjct: 981 --------------------------------------SGHKMGLKYACPVFEGPKEEAL 1002 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 +E + +G++RLYDGRTGE F+ V VGYMYMLKLNHLV+DK+HARSTG YSLVT Sbjct: 1003 REAFVASGMNPNGKVRLYDGRTGEPFKNDVAVGYMYMLKLNHLVEDKVHARSTGPYSLVT 1062 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQM 1315 QQPLGGK+QFGGQR GEMEVWALEAYGAA LQE LTVKSDD+ GR ++Y++IV G+ Sbjct: 1063 QQPLGGKSQFGGQRLGEMEVWALEAYGAANMLQEFLTVKSDDMTGRARIYESIVKGDVIS 1122 Query: 1316 EPGMPESFNVLLKEIRSLGINIELEDE 1342 PG+PESFNVL++E+R LG+NI + DE Sbjct: 1123 SPGIPESFNVLVQELRGLGLNITIHDE 1149 >UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=Veillonella RepID=A3FMP8_9FIRM Length = 1124 Score = 858 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 493/1190 (41%), Positives = 672/1190 (56%), Gaps = 112/1190 (9%) Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 D GTF+ING ERVIVSQL RSPGV++D + + G LY + +IP RG+W++ E D Sbjct: 1 DTGTFIINGAERVIVSQLVRSPGVYYDKEID---TMGNRLYASTVIPNRGAWIELETDAN 57 Query: 192 DNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRG-E 249 + + VRIDR RK+PATI++RAL + T E IL+LF+ + E + LR E Sbjct: 58 EVVSVRIDRNRKIPATILVRALGWDTNESILELFWNGQVDEDGNPIY----DERLLRTLE 113 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 + + V + K R + ++ + V + +++ G Sbjct: 114 KDTTESSEEALVEIYKKLRPGEPPTVESARNLFDNLFFDPRRYDFARVGRYKVNKKLGWK 173 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 L+ + + + G I A I Sbjct: 174 QRMFGQLLAQPIF-----------------NPETGEVIL------------DAGTHIGEE 204 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 + A F + D + N +L ++++D+I + Sbjct: 205 EIEIVEKSGVFAGEGFAEFYIDI---DGVHAKVICNNCNL----PYEFRTVTREDMIANI 257 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP 489 L+++ +G G DDIDHLGNRR+R VGE+ +NQFR+GL R+ER V+ER+++ + D + P Sbjct: 258 SYLLNLMDGVGHTDDIDHLGNRRLRCVGELLQNQFRIGLTRMERVVRERMTVQESDMITP 317 Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 Q +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+THKRR+SALGPGGL+RERAGFEVRD Sbjct: 318 QALINIRPVVAAVKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLSRERAGFEVRD 377 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG------------ 597 VH +HYGR+CPIETPEGPNIGLINSLS YA+ NE+GF+E PYRKV Sbjct: 378 VHHSHYGRMCPIETPEGPNIGLINSLSNYAKVNEFGFIEAPYRKVEKIYGTGDEADKIVK 437 Query: 598 -VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 VTD + Y++A EE VIAQANS LDEEG FV D + CRS + + D+VDYMDVS Sbjct: 438 VRVTDTVAYMTADEEEGMVIAQANSVLDEEGCFVSDHIACRSGHDVLEVTPDKVDYMDVS 497 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 ++VVS+G ++IPFLE+DDANRALMGANMQRQAVP LRA PLVGTGME A DSGV Sbjct: 498 PKEVVSIGTAMIPFLENDDANRALMGANMQRQAVPLLRAQAPLVGTGMEYTAATDSGVCI 557 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 +AK G V +I + M +D+Y + K+ RSNQ+TC NQ P V G+ Sbjct: 558 LAKAAGTVVRCWGDQIHV------MRDDNGRVDVYKMNKFLRSNQSTCFNQKPIVHRGDH 611 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 V G VLADGP+TD GELALG N+ VAFMPW GYN+ED+IL+SE + +ED +T+IHI+E Sbjct: 612 VVAGQVLADGPATDGGELALGFNILVAFMPWEGYNYEDAILLSEDLCKEDIYTSIHIEEY 671 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 C +RDTKLG EEIT ++PN G+ +L LD GI+ IGAEV GDILVGK TPKGET+LT Sbjct: 672 ECDARDTKLGAEEITRELPNTGDDSLKNLDADGIICIGAEVKPGDILVGKATPKGETELT 731 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQ 955 PEE+LLRAIFG+K +V+D+SLRVP+G SG ++DV+VFTR +G E ++ + + Q Sbjct: 732 PEERLLRAIFGDKEREVRDTSLRVPHGESGKIVDVKVFTRENGDELQPGVNKLVRVYIAQ 791 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE---------------- 999 +K + G + V+ + D P L Sbjct: 792 KRKIHEGDKMAGRHGNKGVVSRVMRREDMPF-LPDGTPVQIVLNPLGVPSRMNIGQVLET 850 Query: 1000 --------LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 LG+ ++ Q++Q+ E+ + + +E + + D+L + + V Sbjct: 851 HLGFAVQGLGMKIKDTDMQIKQVLER-AKTDASYWDNIEELKGLYARLDELKAQIAQDVT 909 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV-----LNPLGVPSR 1106 V ++ + N I D+ E + + L R Sbjct: 910 VAHLDV--------------DEEITQLTNDIMDLVKVETERQLSALGGYTRYRELKDIER 955 Query: 1107 MNIGQILETH-LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 ++ + +E + + ++ L + Q ++ E I A + +++R+ ++ Sbjct: 956 SHMAKQIECFDTDESVPDMDPELEKELGRLQSTVRILETIDEAREKRSEIRKSLEA-IGY 1014 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 D E + + G+ IATPVFDGA E ++ E L+L G+ LYDGRTGE + V Sbjct: 1015 DYEQYGMPKPDVAGIHIATPVFDGASEVDVFEALQLAGKSEDGKTVLYDGRTGEPMDNRV 1074 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 TVGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1075 TVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1124 >UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 Tax=Bacteria RepID=RPOB_BACP2 Length = 1196 Score = 856 bits (2211), Expect = 0.0, Method: Composition-based stats. Identities = 457/1084 (42%), Positives = 641/1084 (59%), Gaps = 82/1084 (7%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 13 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 66 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 67 LEFIDYSLGDPKYPVAESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 119 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F K +GK + A +IP RG+WL++E Sbjct: 120 PIMTDTGTFIINGAERVIVSQLVRSPSVYFSG---KVDKNGKKGFTATVIPNRGAWLEYE 176 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKV--------IFEIRDNKLQ 238 D KD ++VRIDR RKLP T++LRAL ++++ +ILDL E +K Sbjct: 177 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEILDLIGENEYLRNTLEKDNTENADKAL 236 Query: 239 MELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 +E+ GE + + + + + R A R + + + Sbjct: 237 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKL----HIKNRLFNQK 292 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ +D TGE++ L +L K L++G + Sbjct: 293 LAETLVDPETGEILAEKGQILDRRVLDK------------VLPYLENGIGFRKLYPNGGV 340 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 + L I ++ P + G N E Sbjct: 341 VEDEVELQSI-KIYAPSDQE------------------------GEQVINVIGNAYVEEA 375 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 ++ DII + ++ +G G+ DDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V+ Sbjct: 376 VKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVR 435 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPG Sbjct: 436 ERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPG 495 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT- 595 GLTRERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS +A+ N +GF+ETPYR+V Sbjct: 496 GLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRVDP 555 Query: 596 -DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 G VT I YL+A EE NYV+AQAN+ L ++G F++D + R +GE+++ R++VDYMD Sbjct: 556 ETGKVTPRIDYLTADEEDNYVVAQANALLADDGSFIDDNIIARFRGENTVVPRNRVDYMD 615 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS +QVVS + IPFLE+DD+NRALMGANMQRQAVP ++ + P+VGTGME DSG Sbjct: 616 VSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPESPIVGTGMEYVSGKDSGA 675 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPG-EAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 + + GVV+ V+A I ++ ED + +D Y+L K+ RSNQ TC NQ P VS+ Sbjct: 676 AVICRYPGVVERVEAKNIWVRRYEDVDGQQVKGNLDKYSLLKFVRSNQGTCYNQRPIVSV 735 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V +G++LADGPS + GELALG+N+ V FM W+GYN+ED+I++SER+V++D +T+IHI Sbjct: 736 GDEVVKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSIHI 795 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +E +RDTKLGPEEIT DIPNVGE AL LDE GI+ IGAEV GD+LVGKVTPKG T Sbjct: 796 EEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDLLVGKVTPKGVT 855 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQ 952 +LT EE+LL AIFGEKA +V+D+SLRVP+G G + DV+VF R DG E ++ + Sbjct: 856 ELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDELPPGVNQLVRVY 915 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 + Q +K + G I +L + D P D L L + N + Sbjct: 916 IVQKRKISEGDKMAGRHGNKGVISKILPEEDMPY-LPDGTPIDIMLN-PLGVPSRMNIGQ 973 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDD-----LAPGVLKIVKVYLAVKRRIQPGDKMA 1067 L + + + +D G+ + K L R G+ Sbjct: 974 VLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRT---GEPFD 1030 Query: 1068 GRHG 1071 R Sbjct: 1031 NRVS 1034 >UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTP8_TREPR Length = 1290 Score = 847 bits (2188), Expect = 0.0, Method: Composition-based stats. Identities = 429/1333 (32%), Positives = 652/1333 (48%), Gaps = 87/1333 (6%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP 78 P LL +Q +F + + YGL+ S+FP+ S+ G + ++ V Y +G+P Sbjct: 20 PYPDLLGVQRSAFNRLTQHSTHPSARNPYGLQRLLFSMFPMMSHDGAALIELVKYTIGKP 79 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYEREAP-EGTVKDIKEQEVYMGEIPLMTDNGTFV 137 EC G+TYSAPL + L++ V+ + +VY+G++P+MT G+F+ Sbjct: 80 CSTDAECLRSGLTYSAPLSLTLKITSRTPSNDGTWHVRYSRSHQVYLGDMPMMTRKGSFI 139 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 + GTER ++ +R+ G+ F + + + RI+P+RG+WL+ + R Sbjct: 140 VRGTERTLLVLQNRAYGLGFVPYLTYSMYDTPTVCSLRIVPHRGTWLELSI-QDGAVLFR 198 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 + +PATI+L+ +T+ I + + I + + + + FD Sbjct: 199 FNAGVFMPATILLKGFGASTDAIAGMLTPRAGIAISPGGASIAIDLSDIAFDVQHFDT-- 256 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI--DESTGELICAANM 315 R AR R+L K L P+ VV K + D S G + Sbjct: 257 ---------RLGHARLTRRLAKSRGSLEGRPLHIEDADVVNKFELASDASLGGRTVGSGT 307 Query: 316 ELSLDLLAKLSQSGHKRIETLFT-NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 LS +++ + + + + YI+ TLR+D T D A I + Sbjct: 308 LLSQRVISMARADRESYLAVVNRCHHGAYLRYIARTLRMDRTVDPHDARACIAGHIGIMR 367 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 +A SLF+ + + Y L+ GR + N + R +G L DI +K LI+ Sbjct: 368 HLDPASAHSLFQGIMENARAYCLTPCGRSQLNARIGRHFSQGGDTLDARDIALSLKLLIN 427 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 DD+D + NR+ R + + R + ++R ++ + ++ Sbjct: 428 ATRRNVRPDDVDDMSNRKARDACDALCDALRPAFLGLKRRLRSH-TANSRPGEAIAILLG 486 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 ++ + +S+L+Q +DQ NPL+E+THKRR++ + RA RDVH TH Sbjct: 487 LHAVTHQAYDELTNSRLAQPLDQTNPLAEVTHKRRVAIIAGSDSGPRRAPLGARDVHATH 546 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 YGR+CP+ETPEG NIGLI SL+ A+ + G + PY Y+S EE Sbjct: 547 YGRLCPVETPEGQNIGLIASLAARARIDAQGTILAPYVVTRRNATRAAARYISPQEE--- 603 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 + ++ H + R ++ +V +D + + +S + IPFLEH+ Sbjct: 604 -VGAMSAPSAIVPHSRRRTIMARIGHGVAMVHPSEVILVDGANEMALSAATATIPFLEHN 662 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DA RALMG+NMQRQAVP KP V TGME+AVA + V A+ G V YVD I I Sbjct: 663 DACRALMGSNMQRQAVPCCYPRKPRVHTGMEQAVAQHAMVAIRARYAGRVAYVDPLHIAI 722 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + + Y L + R+NQ T + P V G V+ GDV+ADGP+++ G L Sbjct: 723 VP----ICENQGHACTYRLARNVRTNQGTQADHRPTVIPGSYVQAGDVIADGPASEGGVL 778 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 ALG+++ VAFMPW GYN+EDS+ VSE +++ +T++H+ E++ ++ + Sbjct: 779 ALGRDVLVAFMPWEGYNYEDSVAVSEALLRNGAYTSVHLDEVSVDMDGDDGCGTVLSRCV 838 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 P + ++ +LDE GIV +G+ V GDI+VG+++P+ LLR + Sbjct: 839 PGITQSQRDRLDERGIVRVGSMVYPGDIIVGRISPRHAGIAPKGNSLLRTALATSEQANR 898 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 DSS+R G++GTV+ IE DL + E L R Sbjct: 899 DSSIRATQGMTGTVV---------------YSRIEPCNQPDVHDDLPGQC-AGEQSLLRR 942 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLELGL-TDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 I G A RD + + +EQ A Sbjct: 943 I-----QHGARATYCWASARDPYFWMPRNGLAAAPYAMEQHASPKA-------------- 983 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 G + +KV +A + +QPGDK++GRHGNKGV+SK+ PIEDMPY +NG Sbjct: 984 -----GLHPYDKATRTLKVAIASRIDLQPGDKVSGRHGNKGVVSKVVPIEDMPYMKNGRS 1038 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VD+++NPLGVPSRMN+GQ+LETH+G+A+ L+ + A+ +D Sbjct: 1039 VDVIVNPLGVPSRMNVGQLLETHIGLAS--------IALEARSNTAEHLLCSSAYHDAMC 1090 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK---------LGDL 1204 D + + R + P FDG EAEI+ + + L Sbjct: 1091 HGLMACDGRCYPACSAAGGSPGHRVTLCTLCPAFDGPSEAEIRSMARAAATQGVRFKHGL 1150 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 Q LYDGRTG Q++RPVTVG+MY LKLNHL +K+H+RSTG YSLVT+QPLGGKA+ Sbjct: 1151 HRRHQAILYDGRTGTQYDRPVTVGFMYYLKLNHLARNKVHSRSTGPYSLVTEQPLGGKAR 1210 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 GGQR GEMEVWALEA+GAA+TLQEMLT+KSDDV GR +++ +I + G PES Sbjct: 1211 SGGQRVGEMEVWALEAHGAAFTLQEMLTIKSDDVGGRRRVHDHIAQDVRPLSYGTPESIG 1270 Query: 1325 VLLKEIRSLGINI 1337 +L++E+RSL +++ Sbjct: 1271 LLVRELRSLCVDV 1283 >UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Tax=Bacteria RepID=RPOB_CLOBB Length = 1249 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 466/1371 (33%), Positives = 675/1371 (49%), Gaps = 240/1371 (17%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ KR R FGK V ++P L+ +QLDS+Q F+ + GL F + PI Sbjct: 1 MVHPVQVGKRTRMSFGKVKDVTEMPNLIEVQLDSYQWFLRE------GLHEVFEDINPIT 54 Query: 61 SYSGNSELQYVSYRLGEP--VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 +++GN L++V Y+L + V+EC+ R TY+APL+V +RL E +IK Sbjct: 55 NFTGNLVLEFVDYKLDMDNIKYSVEECKERDATYAAPLKVSVRLQNNE-------TGEIK 107 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 EQEV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+++ KT GK LY+A +IP Sbjct: 108 EQEVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYSIDKT---GKKLYSATVIP 164 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF------- 230 RG+WL++E D D ++VRID+ RKLP TI+ RA+ + + +++LD F E F Sbjct: 165 NRGAWLEYETDSNDIIYVRIDKTRKLPITILARAMGFGSDQELLDFFGEDERFRASIEKD 224 Query: 231 -EIRDNKLQMELVPERLRGETASFD--IEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 + +E+ GE + D I ++ + R +R R + Sbjct: 225 NTKTREEGLLEIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKL----A 280 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL-----D 342 IA ++ A D I+ STGE++ ++S L + +G K ++ L + L + Sbjct: 281 LNLRIANQIAAMDVINPSTGEIMVEKGQKISRLLAEDIQNAGIKSVDILVDDKLVRVISN 340 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 + I++ + D ++ ++ LV Y +R D Y + Sbjct: 341 NFVDITKQVPFDVSDLQIKELVH-YPTLR------------------EILDNYSDETTIK 381 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 + ++L R + + KDDI + + + G G VDDIDHLGNRR+RSVGE+ +N Sbjct: 382 EEIKKNLSRLIPKH---IIKDDIFATISYELGLPYGIGYVDDIDHLGNRRLRSVGELLQN 438 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 QFR+GL R+ER VKER+++ D +++ PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPLS Sbjct: 439 QFRIGLSRMERVVKERMTIQDQESITPQMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLS 498 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSL+ +A+ N Sbjct: 499 ELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFARVN 558 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 EYGF+ETPYR V R+ E Sbjct: 559 EYGFIETPYRIVDKE-------------------------------------NARATEEI 581 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 F+ D+ D ++ + F++ R L + LV Sbjct: 582 RYFTADEEDQCLIAQAKEPLDENGY--FVDKKVTVRYL---------------EDVLVVP 624 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 + + S V+ ++ +++ + M Sbjct: 625 ATDVDLMDVSARQIVSVATAMIPFLENDDASRALMGSNMQRQAVP--------------- 669 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM-RVAFMPWNGYNFEDSILVSER 821 Q P V G + + D G L +N V F+ N Sbjct: 670 LLKPQAPIVGTGIEFK--------AAVDSGVLPKARNAGVVTFVSAN------------- 708 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 + G + + S +++ IV G V Sbjct: 709 ---------------EIRVKRDSDGGTDNYRLLKFKRSNQSSCINQRPIVNKGEIVFKNQ 753 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 +L ++ + + + + +D+ + ++ VFT +E+ Sbjct: 754 VL-ADGPSTDLGEIALGKNIRMGFITWEGYNYEDA---MLISEE--LVREDVFTSMHIEE 807 Query: 942 DKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 + ++ ++ +D+ ++ I+ G R +LV + + Sbjct: 808 YECEARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSGDILVGKVTPKGETEL 867 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 +R L ++ ++ + L + E + K+ + GD+L PGV ++V+ Sbjct: 868 TAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDIKVFTR----ENGDELNPGVNELVR 923 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 Y+ KR+I GDKMAGRHGNKGVIS+I P EDMP+ +G P+ I LNPLGVPSRMNI Sbjct: 924 CYIVQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGRPLQICLNPLGVPSRMNI-- 981 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 G + L Sbjct: 982 -------------GQVLEVHLGWAAS---------------------------------- 994 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + G I+TPVFDGA E EI+E L+ +G+ LYDGRTGE F+ VTVG MY Sbjct: 995 -----KLGWHISTPVFDGATENEIEECLEKAGYNANGKTVLYDGRTGEPFDNLVTVGIMY 1049 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 +LKL HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA+TLQE+L Sbjct: 1050 ILKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEIL 1109 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 TVKSDDV GR K Y+ IV G + EPG+PESF VL+KE+++L +++++ +E Sbjct: 1110 TVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNE 1160 >UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 Tax=Bacteria RepID=RPOB_CLOTH Length = 1250 Score = 844 bits (2181), Expect = 0.0, Method: Composition-based stats. Identities = 464/1364 (34%), Positives = 672/1364 (49%), Gaps = 225/1364 (16%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ + +R + K +V+D+P L+ IQ +S+++F+++ G + F+ V PI Sbjct: 1 MVHPVKLGRNVRMSYSKIDEVIDMPNLIEIQKNSYEQFLKE------GFKEVFKDVNPIT 54 Query: 61 SYSGNSELQYVSYRL-GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 Y+GN L++V Y L P + V EC+ R TY+APL+VK+RL+ E ++KE Sbjct: 55 DYTGNLILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLINKE-------TGEVKE 107 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 QE++MG+ PLMT+ GTF+ING ERVIVSQL RSPG+++ K +GK L++ +IP Sbjct: 108 QEIFMGDFPLMTETGTFIINGAERVIVSQLVRSPGIYYAMKIDK---AGKQLFSNTVIPN 164 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF-------- 230 RG+WL++E D D L VRIDR RKLP T+++RAL Y T +I +LF E Sbjct: 165 RGAWLEYETDSNDVLSVRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDS 224 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVP 288 + + +E+ GE + + + + R A+ R + + Sbjct: 225 TKTEEEGLLEIYKRLRPGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSIAA-- 282 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 I G + ++ D TGE+I A +S + + +G + + D + I Sbjct: 283 --RIHGFIAGENIKDPDTGEIIVAEGETISREKAETIQNAGVNTV--ILRVDGKNVKVIG 338 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 + Y P E E + E + + Sbjct: 339 NDMVDIKR----------YVDFDPKEIGINEKVKRDVLMEILEEYKGKGDDAIKKALQER 388 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 + + ++K+DII + +I + G G DDIDHLGNRR+RSVGE+ +NQFR+GL Sbjct: 389 IDDLIPKH---ITKEDIISSISYIIGLSYGIGSTDDIDHLGNRRLRSVGELLQNQFRIGL 445 Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 R+ER V+ER+++ DLD + PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPL+E+THKR Sbjct: 446 SRMERVVRERMTIQDLDVVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTHKR 505 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ NEYGF+E Sbjct: 506 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIE 565 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 TPYRKV+ E G ++V + + Sbjct: 566 TPYRKVSKE---------------------------EPGKVTNEIVYL--------TADE 590 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 + +Y+ + + I + + P+ + Sbjct: 591 EDEYIIAQANEPLDEEGRFISNKVVCRYKEEFIEVD------PSKIDFMDV--------- 635 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 S V+ ++ +++ + M Sbjct: 636 ---SPKQIVSVATSMIPFLENDDANRALMGANMQRQAV---------------------- 670 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 P + P+ G + + D G + L +N V V++ Sbjct: 671 PLIKTESPIV-GTGIEYRAARDSGVVILAKNPGV--------------------VEKVTA 709 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 I I+ TK G + + + + +++ IV G EV GD+ + Sbjct: 710 NEIIIR--------TKDGKRDTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDV-IADGP 760 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 ++ + +L + + +D+ L +S ++ VFT +E+ + Sbjct: 761 STDNGEIALGKNVLVGFMTWEGYNYEDAIL-----ISERLVKDDVFTSIHIEEYEAEARD 815 Query: 949 EEMQLKQAKKDLSE----------ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 ++ + +++ I+ G R +LV + + +R L Sbjct: 816 TKLGPEDITREIPNVSEDALKDLNSEGIIRIGAEVRAGDILVGKVTPKGETELTAEERLL 875 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 ++ ++ + L + E + K+ + GD+LAPGV K+V+VY+A KR Sbjct: 876 RAIFGEKAREVRDTSLRVPHGESGIVVDVKIFTR----ENGDELAPGVNKLVRVYVAQKR 931 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 +I GDKMAGRHGNKGVIS+I P+EDMP+ +GTP+DIVLNPLGVPSRMNI Sbjct: 932 KISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPLDIVLNPLGVPSRMNI--------- 982 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 G + L + Sbjct: 983 ------GQVLEVHLGYAAKAL--------------------------------------- 997 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 G +ATPVFDGA E +I + L+ L G+ LYDGRTGE FE VTVGYMYMLKL HL Sbjct: 998 GWKVATPVFDGATEEDIVQTLRKAGLAEDGKSILYDGRTGEPFENRVTVGYMYMLKLAHL 1057 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 VDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV Sbjct: 1058 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDV 1117 Query: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 GR K Y+ IV G + EPG+PE F VL+KE++SL +++++ E Sbjct: 1118 VGRVKTYEAIVKGENVPEPGIPECFKVLIKELQSLCLDVKVYSE 1161 >UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria RepID=D1B5Y3_THEAS Length = 1201 Score = 830 bits (2144), Expect = 0.0, Method: Composition-based stats. Identities = 448/1363 (32%), Positives = 668/1363 (49%), Gaps = 260/1363 (19%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSV 56 M R+ GK+ ++++P L+ +Q S++ F + D + GL+ F+ V Sbjct: 1 MAVEVPSLMAPRRYLGKQKDLIELPDLVEVQRHSYEWFFQADEDPNFRRLQGLQELFKEV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI+SY GN L++V Y + P ++E + R +T+S P+R +RLV + + Sbjct: 61 FPIESYDGNFALEFVRYYVDPPTISIEEARERDLTWSRPIRATIRLVN-------RSNGE 113 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKE+EVY+G+ P+MTD GTF+INGTERV+VSQL RS GV+F +D S G+ Y A++ Sbjct: 114 IKEEEVYLGDFPVMTDRGTFIINGTERVVVSQLARSAGVYFSADLS---SPGQETYAAKL 170 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IP RG+WL+F+ P+ + ++ + + +F + + Sbjct: 171 IPDRGAWLEFDL---------------TPSEFLSVKIDNRKKIPVTMFLKALG------- 208 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 + E LR L V+ ++V E + G + Sbjct: 209 --VPTDDELLR-----------------------------LFGATVEEVDVVEEDVRGML 237 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ + G +I N ++ + L +L + G R+ + ++ETL DPT Sbjct: 238 LAEPIVGS-DGRVIFHKNDRITKEHLDELWKQGRTRVAVWRVDH-----SVAETLEKDPT 291 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 + A++EI+R ++P EPP E A +LFF RY+L VGR K NR L + + Sbjct: 292 SSTDEAMLEIFRRLKPNEPPRMENAREHMHSLFFDSRRYNLGRVGRYKLNRRLGLQVDDE 351 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 +L+ +D++ ++ L+ +R+G DDIDHLGNRR+R++GE+ +NQ R+GL+R+ER K Sbjct: 352 QRLLTVEDVVAIVNGLLKLRDGLEREDDIDHLGNRRVRAIGELLQNQVRIGLLRMERIAK 411 Query: 477 ERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 ER++ + DL + +D+IN +PISAA++EFFGS QLSQFMDQ NPL+E+TH+RR+SALGP Sbjct: 412 ERMTTIPDLSSATAKDLINVRPISAALREFFGSGQLSQFMDQTNPLAELTHRRRLSALGP 471 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGL+RERAGFE RDVH THYGR+CPIETPEG NIGL+ SL+ YA+ NEYGFL TP R+V Sbjct: 472 GGLSRERAGFEARDVHYTHYGRICPIETPEGSNIGLVTSLATYAKINEYGFLVTPRRRVV 531 Query: 596 DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 DG VT E+ YLSA +E Y + A++ + E+G + + + Sbjct: 532 DGRVTGEVVYLSADDEDEYNVGMASTPVGEDGSIL-----------IDEVHVRHRGDIRM 580 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 + V FL+ S Sbjct: 581 VPKDQVD-------FLDV--------------------------------------SPKQ 595 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 V+ G++ +++ + M + + P V G Sbjct: 596 IVSVSTGLIPFLEHDDANRALMGSNMQRQAVPLV---------------RAEAPLVGTGI 640 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 + D S ++ T + Sbjct: 641 ---EAKIARDSGSC--------------------------------ILARRSGTVEFVDA 665 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 V R G + + + + +V G V GD++ +G +L Sbjct: 666 DRVVIRAED-GTLNQYRLVKFRRSNQGTVIHQRPLVRKGDPVKAGDVIADGQACQG-GEL 723 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955 +L A + + +D+ L +S V+ +T +E+ + ++ ++ Sbjct: 724 ALGRNVLVAFVSWEGYNFEDAIL-----LSQRVVKEDYYTSIHIEEYEVEARDTKLGPEE 778 Query: 956 AKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 +D+ +E I+ G R +LV + D+ P +R L ++ Sbjct: 779 ITRDIPNVGDDALKNLDENGIVRIGAEVRAGDILVGKVTPKGESDQSPEERLLRAIFGEK 838 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 ++ + L + E K ++ +DL+PGV ++VKVY+A R+I GDK Sbjct: 839 AREVRDSSLRVPHGEGGKVVAIKRLSREH---NSEDLSPGVNEVVKVYVAQFRKITEGDK 895 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 MAGRHGNKGV+SKI P EDMP+ +GTPVD+VLNPLGVPSRMN +G Sbjct: 896 MAGRHGNKGVVSKILPEEDMPFLSDGTPVDVVLNPLGVPSRMN---------------LG 940 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 ++ + G +ATP Sbjct: 941 QVFETVMG---------------------------------------FVAMHNGWKVATP 961 Query: 1186 VFDGAKEAEIKELLKL------GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 VF+GA + EI +L+ +L +I LYDGRTGE ++ VTVG MYMLKL HLV Sbjct: 962 VFEGADQEEIFQLVDKIRENKYPELTRDCKITLYDGRTGEPMDKKVTVGVMYMLKLIHLV 1021 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARSTG YSL+TQQPLGGK QFGGQRFGEMEVWALE YGAA+ LQE+LTVKSDD+ Sbjct: 1022 DDKIHARSTGPYSLITQQPLGGKTQFGGQRFGEMEVWALEGYGAAHMLQEILTVKSDDIR 1081 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 GR K Y+ IV G + +PG+PESF VL+KE++ LG+++E+ E Sbjct: 1082 GRLKTYERIVKGQNLAKPGVPESFRVLIKELQGLGVDVEIVYE 1124 >UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY37_9BACL Length = 1267 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 444/1114 (39%), Positives = 640/1114 (57%), Gaps = 86/1114 (7%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M K R R+ + + +V+D+P L+ IQ S+ KF+E GL+ F+ V PI+ Sbjct: 1 MQKVKFGKHRQRRSYARISEVIDLPDLIEIQTLSYDKFLE------TGLKDVFKDVSPIE 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 + L+++ Y+LG P +DV E + R TYSAPLRV++RL+ ER+ +IKEQ Sbjct: 55 GNNDKLSLEFIDYKLGTPKYDVDESKERDATYSAPLRVRVRLINKERD-------EIKEQ 107 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MGE+PLMT+ GTF+ING ERVIVSQL RSP V+F D + Y +IP R Sbjct: 108 EVFMGELPLMTETGTFIINGAERVIVSQLVRSPSVYFTEDDKLKVKNIPNAYKTTVIPNR 167 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF--------E 231 G+WL+FE D K ++ RIDR RK+P T ++RAL + + E I+ LF E Sbjct: 168 GAWLEFEKDIKGLVYARIDRTRKIPLTTLIRALGFESDESIIKLFGEDTELLNTLEKDEN 227 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPV 289 + + + GE A+ + + + R A+ R + + + Sbjct: 228 LDTGTALKVIYDKLRPGEPANVETAKATLHGRFFDPRRYDLAKVGRYKLNNKLHVG---- 283 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 E + +++ + +D TGE++ +L+ +++ + + + + + Sbjct: 284 ERLENQILVEPIVDTETGEILVEKGTKLTREIIDGIYEELGTTANVVEFDMNESL----- 338 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 D ++ L +I ++ G YD+ + + + Sbjct: 339 ----DGSDSLKLQLFKIVNQVKVGND-------------------YDIDELTDDQVLHVI 375 Query: 410 LREEI-EGSGILSKDDIIDVMKKLIDIRNGK-----------GEVDDIDHLGNRRIRSVG 457 + L+ DI+ + + + + G VDDIDHLGNRR+R +G Sbjct: 376 GNGAPNKDVLTLTIADIVASINYYLLLIRTRRNNDGFEFELIGRVDDIDHLGNRRLRCIG 435 Query: 458 EMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 E+ +NQ RVG+ R+ER V+ER+S+ D + + PQ +IN +P++A +KEFFGSSQLSQFMDQ Sbjct: 436 ELLQNQIRVGISRMERVVRERMSIQDTNEITPQQLINVRPVTAIIKEFFGSSQLSQFMDQ 495 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 NPLSE+THKRR+SALGPGGLTRERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS Sbjct: 496 VNPLSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSS 555 Query: 578 YAQTNEYGFLETPYRKVTDG-----VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVED 632 +A+ NE+GF+ TPYRKV VT+ + YL+A +E YV+AQ+ +N+DE+G+FV++ Sbjct: 556 FARINEFGFIMTPYRKVEFDGEGRPYVTENVQYLTADQEDKYVVAQSTANVDEKGYFVDE 615 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 V CR +G++++ R+ +++MDVS +QVVS + IPFLE+DD+NRALMGANMQRQAVP Sbjct: 616 EVVCRFRGDNTVKPREMMNFMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPL 675 Query: 693 LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG-EAGIDIY 751 + + P VGTGME A DSG +AK G+V+YVD ++I ++ E + +D Y Sbjct: 676 MITEAPFVGTGMEHLAARDSGAAVIAKYPGIVEYVDGAKIKVRRIETLEGKEIKGDLDTY 735 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 + K+ RSN +T NQ P V +G+ VE D+LADGPS D GELALG+N+ VAF+ W+GYN Sbjct: 736 VIHKFVRSNHSTAYNQKPIVKVGDRVEPKDILADGPSMDKGELALGKNLVVAFVNWDGYN 795 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 +ED++++SER+V++D +T+IH++E +RDTKLGPEEIT +IPNVGE AL LD GI+ Sbjct: 796 YEDAVIMSERLVKDDVYTSIHVEEYETDARDTKLGPEEITREIPNVGENALRNLDARGII 855 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 IGAEV GDILVGKVTPKG T+ TPEEKLL AIFG K+ +V+D+SLRVP+G G V DV Sbjct: 856 RIGAEVKDGDILVGKVTPKGLTEQTPEEKLLYAIFGAKSKEVRDTSLRVPHGADGVVADV 915 Query: 932 QVFTRDGV-EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 ++F R+ E E+ + + Q +K + G I +L + D Sbjct: 916 KIFKREDGAELPNGVNELVRVFIVQKRKIRVGDKMAGRHGNKGVISNILPEEDMPY-LPD 974 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL-----APG 1045 P D L L + N + L + + +D+ G Sbjct: 975 GTPVDVMLN-PLGVPSRMNIGQVLELHLGMAAKQLGIHVATPVFDGATDEDVWSTVAEAG 1033 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 + K K L R G+ R GV+ I Sbjct: 1034 MAKDAKTVLYDGRT---GEPFDSRVS-VGVMYMI 1063 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 289/1190 (24%), Positives = 465/1190 (39%), Gaps = 184/1190 (15%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 K EI++ ++ M +P L ET +F I +V V + R + + + +K VK Sbjct: 96 LINKERDEIKEQEVFMGELP--LMTETGTFIINGAERVIVSQLVRSPSVYFTEDDKLKVK 153 Query: 284 LIEVP--VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 I I + ++ + G + + + L + G + E++ Sbjct: 154 NIPNAYKTTVIPNRGAWLEFEKDIKGLVYARIDRTRKIPLTTLIRALGFESDESIIKLFG 213 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 + + TL D D +AL IY +RPGEP E A++ FF RYDL+ VG Sbjct: 214 EDTE-LLNTLEKDENLDTGTALKVIYDKLRPGEPANVETAKATLHGRFFDPRRYDLAKVG 272 Query: 402 RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE 461 R K N L E + IL ++ ++D G+ V+ G + R + + Sbjct: 273 RYKLNNKLHVGERLENQIL--------VEPIVDTETGEILVE----KGTKLTREIIDGIY 320 Query: 462 NQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 + VE + E L D L ++N + + Sbjct: 321 EELGTTANVVEFDMNESLDGSDSLKLQLFKIVNQVKVGNDYD-----------------I 363 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET---PEG---PNIGLINSL 575 E+T + + +G G ++ + D+ + + I T +G IG ++ + Sbjct: 364 DELTDDQVLHVIGNGAPNKDVLTLTIADIVASINYYLLLIRTRRNNDGFEFELIGRVDDI 423 Query: 576 SVYAQTNEYGF-----------LETPYRKVTDGVVTDEIHYLSAIEEGNYVIA------- 617 + R V + + + + ++ + N Sbjct: 424 DHLGNRRLRCIGELLQNQIRVGISRMERVVRERMSIQDTNEITPQQLINVRPVTAIIKEF 483 Query: 618 QANSNLDEEGHFVEDLVTCRSKGESSLF----SRDQVDYMDVSTQQVVSVGASLIPFLEH 673 +S L + V L K S + M+V S + P Sbjct: 484 FGSSQLSQFMDQVNPLSELTHKRRLSALGPGGLTRERAGMEVR-DVHYSHYGRMCPIETP 542 Query: 674 DDANRALMGA--------NMQRQAVPTLRAD-----KPLVGTGMERAVAVDSGVTAVAKR 720 + N L+ + P + + +P V ++ A VA+ Sbjct: 543 EGPNIGLINSLSSFARINEFGFIMTPYRKVEFDGEGRPYVTENVQYLTADQEDKYVVAQS 602 Query: 721 GGVVQ----YVDASRIVIKVNEDEMYPGEA--------------GIDIYNLTKYTRSNQN 762 V +VD + ++ + P E + SN+ Sbjct: 603 TANVDEKGYFVDEEVVCRFRGDNTVKPREMMNFMDVSPKQVVSAATACIPFLENDDSNRA 662 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 M P+ + G + +A P + Sbjct: 663 LMGANM--QRQAVPLMITEAPFVGTGMEHLAARDSGAAVIAKYP--------------GI 706 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 V+ I ++ + + G + V + ++ IV +G V DI Sbjct: 707 VEYVDGAKIKVRRIETLEGKEIKGDLDTYVIHKFVRSNHSTAYNQKPIVKVGDRVEPKDI 766 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 L + +L + L+ A + +D+ + +S ++ V+T VE+ Sbjct: 767 L-ADGPSMDKGELALGKNLVVAFVNWDGYNYEDAVI-----MSERLVKDDVYTSIHVEEY 820 Query: 943 KRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + ++ ++ +++ + I+ G + +LV ++ Sbjct: 821 ETDARDTKLGPEEITREIPNVGENALRNLDARGIIRIGAEVKDGDILVGKVTPKGLTEQT 880 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 P ++ L + K+ + L + + K+ K G +L GV ++V+V Sbjct: 881 PEEKLLYAIFGAKSKEVRDTSLRVPHGADGVVADVKI----FKREDGAELPNGVNELVRV 936 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 ++ KR+I+ GDKMAGRHGNKGVIS I P EDMPY +GTPVD++LNPLGVPSRMN Sbjct: 937 FIVQKRKIRVGDKMAGRHGNKGVISNILPEEDMPYLPDGTPVDVMLNPLGVPSRMN---- 992 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 IG + L + Sbjct: 993 -----------IGQVLELHLGMAAKQL--------------------------------- 1008 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 G+ +ATPVFDGA + ++ + + + LYDGRTGE F+ V+VG MYM Sbjct: 1009 ------GIHVATPVFDGATDEDVWSTVAEAGMAKDAKTVLYDGRTGEPFDSRVSVGVMYM 1062 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +KL H+VDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LT Sbjct: 1063 IKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILT 1122 Query: 1293 VKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 KSDD NGR K Y+ IV G + PG+PESF VL+KE+++LG++ + D Sbjct: 1123 YKSDDTNGRVKTYEAIVKGENIPRPGVPESFRVLMKELQALGMDFRVMDN 1172 >UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Tax=Bacteria RepID=RPOB_LEUCK Length = 1204 Score = 813 bits (2100), Expect = 0.0, Method: Composition-based stats. Identities = 440/1057 (41%), Positives = 606/1057 (57%), Gaps = 86/1057 (8%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K R R+ + +VLDVP L+ IQ S+Q F+++ G++ F + PI + G Sbjct: 10 KHRTRRSYASIKEVLDVPNLIEIQTASYQWFLDE------GIKEMFGDIMPIDDFQGTLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+YV Y+L EP +++ E + YSAPL V LRL +E +IK Q+V+ GE Sbjct: 64 LEYVDYQLMEPKYNIDEAREHDANYSAPLHVTLRLTNHE-------TGEIKSQDVFFGEF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT+ GTF+ING ERVIVSQL RSPG++++ + K +G+ Y +IP RG+WL++E Sbjct: 117 PLMTEQGTFIINGAERVIVSQLVRSPGIYYNQENDK---NGRPRYGTTVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFE--------------KVIFEI 232 D K VRIDR RKL T ++RAL + + I+D+F + K + + Sbjct: 174 TDAKGIANVRIDRTRKLLMTELVRALGFGSDSDIIDIFSDQYDALNMTLEKDVHKDMSDS 233 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPVE 290 R + ++ GE + D V + + R A R + L Sbjct: 234 RVEEALKDVYERLRPGEPKTADSSRALLVARFFDPKRYDLASVGRYKINKKLSL----KT 289 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 + + +A+ D +GE+I + +++KLS + T + E Sbjct: 290 RLLNQTLAETLADPDSGEVIAEKGTLVDKTVMSKLSPFLDREDFKTTTYTPSGDAVLEEP 349 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + + ++ P E L N Sbjct: 350 VT--------------LQKIKIESPENPEKTLLLIGNG---------------------- 373 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 E + DI+ M ++++ G G VDDIDHLGNRRIRSVGE+ +NQFR+GL R Sbjct: 374 -HIDENDRTVRPADILAGMNYFLNLQEGIGNVDDIDHLGNRRIRSVGELLQNQFRIGLTR 432 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 +ER V+ER+S+ D +T+ PQ +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+ HKRR+ Sbjct: 433 MERVVRERMSIQDANTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQTNPLGEMNHKRRL 492 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 SALGPGGLTR+RAG EVRDVH THYGR+ PIETPEGPNIGLINSL+ Y + N+YGF+ETP Sbjct: 493 SALGPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGLINSLATYGRINKYGFIETP 552 Query: 591 YRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 YR+V +VTD+I YL+A EE NY++AQANS L+++G FV D V R E+ D Sbjct: 553 YRRVDWTTHMVTDKIDYLTADEEDNYIVAQANSPLNDDGSFVHDTVMARFGEENIETPID 612 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 ++DYMDVS +QVVSVG + IPFLE+DD+NRALMGANMQRQAVP L PLVGTG+E Sbjct: 613 RIDYMDVSPKQVVSVGTAAIPFLENDDSNRALMGANMQRQAVPLLDPHAPLVGTGIEYKA 672 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 A DSGV +++ GVV+YVD +I ++ + ++ D Y L K+ RSN NQ Sbjct: 673 AHDSGVAMISRAAGVVEYVDGRQIRVRREDGQL-------DTYELMKFRRSNGGKNYNQK 725 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 P V GE VE +VLADGPS + GELALGQN +AFM W GYNFED+I+++ER+V+ED + Sbjct: 726 PIVHEGEHVEADEVLADGPSMEKGELALGQNPLIAFMTWQGYNFEDAIVLNERLVREDVY 785 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 T+IHI+E +RDTKLGPEE+T +IPN GE L LD GI+ +GAEV GDILVGKVT Sbjct: 786 TSIHIEEYDSEARDTKLGPEEMTREIPNTGEDQLKDLDADGIIRVGAEVHDGDILVGKVT 845 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDKRALE 947 PKG T+L+ EE+LL AIFGEKA +V+D+SLRVP+G G V +V+++T +G E Sbjct: 846 PKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGVVQNVRIYTPENGDELAPGVNM 905 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + + Q +K + G + V+ + D P D L + + Sbjct: 906 MVRVYIAQKRKIQVGDKMAGRHGNKGTVSVVVPEEDMPY-MPDGTPIDILL-SPMGVPSR 963 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 N + L + + + D++ Sbjct: 964 MNIGQVLELHLGFAAKKLGIHVASPVFDGASDDEIEA 1000 >UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 Tax=cellular organisms RepID=RPOB_ANASP Length = 1131 Score = 794 bits (2051), Expect = 0.0, Method: Composition-based stats. Identities = 378/1185 (31%), Positives = 551/1185 (46%), Gaps = 158/1185 (13%) Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEK 227 + L + I L+ F + ++ + R Y + K Sbjct: 48 EELNSFSPITDYTGKLELHFLGHNY---KLKEPKYSVEEAKRRDSTYAVQMYVPTRLLNK 104 Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 +I++ ++ + +P L + +F I +V V + R + + + + Sbjct: 105 ETGDIKEQEVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKSEIDKNGRR-TY 161 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 I + + + + + L L G E + L H Y Sbjct: 162 SASLIPNRGAWLKFETDRNDLVWVRIDKTRKLSAQVLLKALGLSDNEIF--DALRHPEYF 219 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 +T+ + AL+E+YR +RPGEPPT + L ++ FF RYDL VGR K N+ Sbjct: 220 QKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGGQQLLDSRFFDPKRYDLGRVGRYKLNK 279 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 L + +L+ DI+ + LI++ G +DDIDHLGNRR+RSVGE+ +NQ RVG Sbjct: 280 KLRLSVPDTVRVLTSGDILAAVDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQVRVG 339 Query: 468 LVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 L R+ER ++ER+++ D + L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THK Sbjct: 340 LNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHK 399 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RR+SALGPGGLTRERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+ +A+ N+YGFL Sbjct: 400 RRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNQYGFL 459 Query: 588 ETPYRKVTDGVVT--DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 ETP+R V +G V Y++A EE + +A Sbjct: 460 ETPFRPVENGRVRFDQPAAYMTADEEDDLRVA---------------------------- 491 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 P D N ++G VP + T + Sbjct: 492 -----------------------PGDIPVDENGYIIGPQ-----VPVRYRQEFSTTTPEQ 523 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 S V V+ ++ +++ + M L K R T + Sbjct: 524 VDYVAVSPVQIVSVATSMIPFLEHDDANRALMGSNMQRQAV-----PLLKPERPLVGTGL 578 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 G + DG + +RV S + Sbjct: 579 EAQGARDSGMVIVS---RTDGDVVYVD----ATEIRVRVSG-------QLPTASGKSTDN 624 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 + T+ + G E + L++ +V IG V G +L Sbjct: 625 GQLTS-------------QKGQEIRYTVSKYQRSNQDTCLNQKPLVRIGERVVAGQVLAD 671 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 + +G +L + ++ A + + +D+ L +S ++ ++T +EK + Sbjct: 672 GSSTEG-GELALGQNIVVAYMPWEGYNYEDAIL-----ISERLVQDDIYTSIHIEKYEIE 725 Query: 946 LEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 ++ ++ +++ +E I+ G + +LV + D+ P + Sbjct: 726 ARQTKLGPEEITREIPNVGEDALRQLDEQGIIRIGAWVEAGDILVGKVTPKGESDQPPEE 785 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 + L ++ + + L E + +L + QGD+L PG +V+VY+A Sbjct: 786 KLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRLFTR----EQGDELPPGANMVVRVYVA 841 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 KR+IQ GDKMAGRHGNKG+IS+I PIEDMPY +G+PVDIVLNPLGVPSRMN+GQ+ E Sbjct: 842 QKRKIQVGDKMAGRHGNKGIISRILPIEDMPYLPDGSPVDIVLNPLGVPSRMNVGQVFEC 901 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 LG A +G + + + I A D Sbjct: 902 LLGWAGHTLGVRFKITPFDEMYGEESSRRIVHGKLQEARDETGKD--------------- 946 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + + G+I +YDGRTGE F+RPVT+G YMLKL Sbjct: 947 ------------------------WVYNPDDPGKIMVYDGRTGEAFDRPVTIGVAYMLKL 982 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 HLVDDK+HARSTG YSLVTQQPLGGKAQ GGQRFGEMEVWALEA+GAAYTLQE+LTVKS Sbjct: 983 VHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKS 1042 Query: 1296 DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 DD+ GR + IV G PG PESF VL++E++SLG++I + Sbjct: 1043 DDMQGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSLGLDIAVH 1087 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 109/350 (31%), Positives = 167/350 (47%), Gaps = 32/350 (9%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRL 75 +P L+ IQ SF+ F+E+ GL S PI Y+G EL ++ +Y+L Sbjct: 21 IEPAFLLPDLIEIQRSSFRWFLEE------GLIEELNSFSPITDYTGKLELHFLGHNYKL 74 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 EP + V+E + R TY+ + V RL+ E DIKEQEV++G++PLMTD GT Sbjct: 75 KEPKYSVEEAKRRDSTYAVQMYVPTRLLNKE-------TGDIKEQEVFIGDLPLMTDRGT 127 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE D D ++ Sbjct: 128 FIINGAERVIVNQIVRSPGVYYKSEIDK---NGRRTYSASLIPNRGAWLKFETDRNDLVW 184 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPERLR 247 VRID+ RKL A ++L+AL + +I D F+ + + MEL + Sbjct: 185 VRIDKTRKLSAQVLLKALGLSDNEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRP 244 Query: 248 GETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 GE + + + R R R ++L +V+ I + Sbjct: 245 GEPPTVLGGQQLLDSRFFDPKRYDLGRVGRYKLNKKLRLSV----PDTVRVLTSGDILAA 300 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 LI S+D + L + + L N + G E + + Sbjct: 301 VDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRER 350 >UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNB1_9SYNE Length = 1150 Score = 792 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 370/1177 (31%), Positives = 548/1177 (46%), Gaps = 177/1177 (15%) Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEKVIFEIRDN 235 I L+ F KD R+ + + R Y+ + K +I++ Sbjct: 63 ITDYTGKLELHFLGKDY---RLKAPKYMVDEAKRRDSTYSVQMYVPTRLINKETGDIKEQ 119 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ++ + +P L + +F I +V V + R + + + I + Sbjct: 120 EVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKAETDKHGRR-TYTANLIPNR 176 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 + + + + L L G E + L H Y +T+ + Sbjct: 177 GAWLKFETDKNDLVWVRIDKTRKLSAQVLLKALGLSDGEIF--DSLRHPEYFQKTIEKEG 234 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 AL+E+YR +RPGEPPT + L E+ FF RYDL VGR K NR L E Sbjct: 235 QFSEEEALLELYRKLRPGEPPTVNGGQQLLESRFFDPKRYDLGKVGRHKLNRKLRLNIPE 294 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + +L+ DI+ + LI++ G DDIDHLGNRR+RSVGE+ +NQ RVGL R+ER + Sbjct: 295 STRVLTPQDIVSAIDYLINLEFDIGNPDDIDHLGNRRVRSVGELLQNQVRVGLNRLERII 354 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 +ER+++ D D+L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THKRRISALGP Sbjct: 355 RERMTVSDADSLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGP 414 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGLTRERAGF VRD+HP+H+GR+CPIETPEGPN GLI SL+ +A+ N++GF+ETP+ V Sbjct: 415 GGLTRERAGFAVRDIHPSHHGRICPIETPEGPNAGLIGSLATHARVNDFGFIETPFFPVV 474 Query: 596 DGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 +G + + Y++A EE D + Sbjct: 475 NGQIVKDKPAVYMTADEE---------------------------------------DDL 495 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 V+ V + I ++VP V + E S Sbjct: 496 RVAPGDVPIDSDNNILG-----------------ESVPVRYRQDFTVTSPKEVDYVAVSP 538 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 V ++ ++ +++ + M L + R+ T + Sbjct: 539 VQIISVATSLIPFLEHDDANRALMGSNMQRQAV-----PLLRPERALVGTGLEAQAARDS 593 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G DG V+++ N D E + + + Sbjct: 594 GMVTIS---RTDG--------------VVSYVDANWIKVTDL---------EGQVHSYEL 627 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 Q+ + L++ V+ G +V G ++ +G Sbjct: 628 QKYQ--------------------RSNQDTCLNQRPFVFEGTKVVAGQVMADGSATEG-G 666 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 ++ + +L + + +D+ L +S ++ V+T +EK + ++ Sbjct: 667 EIALGQNVLITYMPWEGYNYEDAIL-----LSERLVYEDVYTSIHIEKFEIEARQTKLGP 721 Query: 954 KQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 ++ +++ +E I+ G + +LV + D+ P ++ L Sbjct: 722 EEITREIPNVGEDALRQLDETGIIRVGAWVSSGDILVGKVTPKGESDQPPEEKLLRAIFG 781 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 ++ + + L E + ++ + QGD+L PG +V+VY+A KR+IQ G Sbjct: 782 EKARDVRDNSLRVPNGEKGRVVDVRVFTR----EQGDELPPGANMVVRVYVAQKRKIQVG 837 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DKMAGRHGNKG+IS+I P+EDMPY +GTP+DIVLNPLGVPSRMN+GQ+ E LG A + Sbjct: 838 DKMAGRHGNKGIISRILPVEDMPYLPDGTPIDIVLNPLGVPSRMNVGQVFEALLGWAGQN 897 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 + + + + A + D Sbjct: 898 LDARFKVTPFDEMYGEEASLETTHGKLQEARNQTGKD----------------------- 934 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 + + G+I+LYDGRTGE F++ VTVG YMLKL HLVDDK+ Sbjct: 935 ----------------WVFNPDNPGKIQLYDGRTGEPFDQEVTVGQSYMLKLVHLVDDKI 978 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 HARSTG YSLVTQQPLGGKAQ GGQRFGEMEVWALEA+GAAYTLQE+LTVKSDD+ GR + Sbjct: 979 HARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNE 1038 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 IV G PG PESF VL++E++SL ++I + Sbjct: 1039 ALNAIVKGKAIPRPGTPESFKVLMRELQSLCLDIAVH 1075 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 158/344 (45%), Gaps = 32/344 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVFD 81 +P L+ IQ SF+ F+ GL S PI Y+G EL + YRL P + Sbjct: 34 LPDLVEIQRASFRWFL------GEGLVEELESFSPITDYTGKLELHFLGKDYRLKAPKYM 87 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 V E + R TYS + V RL+ E DIKEQEV++G++PLMTD GTF+ING Sbjct: 88 VDEAKRRDSTYSVQMYVPTRLINKE-------TGDIKEQEVFIGDLPLMTDRGTFIINGA 140 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERVIV+Q+ RSPGV++ ++ K G+ Y A +IP RG+WL FE D D ++VRID+ Sbjct: 141 ERVIVNQIVRSPGVYYKAETDKH---GRRTYTANLIPNRGAWLKFETDKNDLVWVRIDKT 197 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPERLRGETASF 253 RKL A ++L+AL + +I D F+ + + +EL + GE + Sbjct: 198 RKLSAQVLLKALGLSDGEIFDSLRHPEYFQKTIEKEGQFSEEEALLELYRKLRPGEPPTV 257 Query: 254 DIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + + R + R ++L + +D + + Sbjct: 258 NGGQQLLESRFFDPKRYDLGKVGRHKLNRKLRLNIPESTRVLT---PQDIVSAIDYLINL 314 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 + + D + L + + L N + G E + + Sbjct: 315 EFD-IGNPDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRER 357 >UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Tax=Bacteria RepID=RPOB_PELTS Length = 1224 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 409/1221 (33%), Positives = 593/1221 (48%), Gaps = 192/1221 (15%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILD-LFFEKVIFEIRDNKLQMELVPERLRGET 250 + L + + R + Y + K E+++ + M P L E Sbjct: 63 EFLDYTLGEPKYTVEECKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFP--LMTEK 120 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 +F I +V V + R + + K + I + ++ + + Sbjct: 121 GTFIINGAERVIVSQLVRSPGVYFDETIDPSGKKLY-TATIIPNRGAWLEFETDVNDHIF 179 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + + + G+ + + I ETL D T+ ALVEIY+ + Sbjct: 180 VRIDRTRKIPATVLVRALGYGTKAQVAEL-FNEDKNILETLARDNTDSEEEALVEIYKRL 238 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE----------------- 413 RPGEPPT ++A SL +LFF RYDL+ VGR K + L Sbjct: 239 RPGEPPTVDSARSLLTSLFFDPKRYDLANVGRYKIQKKLKHGVLYRYGPNPDGKTVFDPY 298 Query: 414 --------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 E L+K+DII+ ++ L+ + NG+G+VDDIDHLGNRR+RSVGE+ +NQFR Sbjct: 299 LKKEVPQKREFIRELTKEDIIETIRYLLKLMNGEGQVDDIDHLGNRRLRSVGELLQNQFR 358 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 +GL R+ER V+ER+++ D+D + PQ +IN +P+ AA+KEFFGSSQLSQFMDQ NPL+E+T Sbjct: 359 IGLSRMERVVRERMTIQDVDVITPQVLINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELT 418 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 HKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ NE+G Sbjct: 419 HKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARINEFG 478 Query: 586 FLETPYRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 F+ETPYRKV VTDEI YL+A EE YVIAQAN+ LDEEG Sbjct: 479 FIETPYRKVDKENRRVTDEIVYLTADEEEGYVIAQANAPLDEEG---------------- 522 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 I + + ++ + + Sbjct: 523 ----------------------RFIEPRVNARSPEIVVVPADRVDYMDV----------- 549 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 S + ++ +++ + M Sbjct: 550 --------SPKQVFSIATALIPFLEHDDANRALMGANMQRQAVP---------------L 586 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 Q P V G E ++ V +++++ Sbjct: 587 LKAQAPLVGTGI-----------------EYKAARDSGV-------------VVIAKESG 616 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 ++ T+ HI+ G + + + +++ IV G V G + Sbjct: 617 TVEKVTSTHIEI------RNDRGYLDRYKLLKFTRSNQGTCVNQKPIVKKGERVEAGQV- 669 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 + +L +L A + + +D+ L + FT +E+ + Sbjct: 670 IADGPSTDYGELALGRNVLVAFMPWEGYNYEDAILVSEKT-----VKEDYFTSIHIEEYE 724 Query: 944 RALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 ++ ++ +D+ ++ I+ G R +LV + + Sbjct: 725 CDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDILVGKVTPKGETELTA 784 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 +R L ++ ++ + L + E + K+ ++ GD+L PGV ++V+VY Sbjct: 785 EERLLRAIFGEKAREVRDTSLRVPHGESGKVVDVKVFSR----DNGDELPPGVNQLVRVY 840 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 +A KR+I GDKMAGRHGNKGVI++I P EDMP+ +GTP++IVLNPLGVPSRMNIGQ+L Sbjct: 841 IAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTPIEIVLNPLGVPSRMNIGQVL 900 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV---- 1169 E HLG AAK +G ++ + + E ++ A + +R ++ + ++EE+ Sbjct: 901 EAHLGWAAKVLGYYVSTPVFNGASEESIFEALKEAAFKESGLRSFMEKAGLNEEELIGAV 960 Query: 1170 --------------MRLAENLRKGMPIATPVFD--------------GAKEAEIKELLKL 1201 + G I + G + EI +K Sbjct: 961 ETAEKRAGSREALIKEVEGAESSGETIMAAIERTGLTAGMVNRLEEAGMTKKEILGAMKK 1020 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 SG++ LYDGRTGE F+ P+TVGY+YMLKL HLVDDK+HARSTG YSLVTQQPLGG Sbjct: 1021 LLFARSGKMTLYDGRTGEPFDSPITVGYVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGG 1080 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE 1321 KAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV G + EPG+PE Sbjct: 1081 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPE 1140 Query: 1322 SFNVLLKEIRSLGINIELEDE 1342 SF VL+KE++SLG+++++ E Sbjct: 1141 SFKVLIKELQSLGLDVKVLSE 1161 Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 126/371 (33%), Positives = 195/371 (52%), Gaps = 34/371 (9%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M Y R+R +FG+ +VLD+P L+ +Q +S++ F+E+ GL F+ + PIQ Sbjct: 1 MAYPEKVGARVRYNFGRLREVLDLPNLIEVQRNSYKWFLEE------GLREVFQDISPIQ 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 55 DFTGNLVLEFLDYTLGEPKYTVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 107 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +V+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+FD SGK LY A IIP R Sbjct: 108 DVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFDETIDP---SGKKLYTATIIPNR 164 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI-------- 232 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y T+ + F + + Sbjct: 165 GAWLEFETDVNDHIFVRIDRTRKIPATVLVRALGYGTKAQVAELFNEDKNILETLARDNT 224 Query: 233 -RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + + +E+ GE + D + ++ + R A R + +K + Sbjct: 225 DSEEEALVEIYKRLRPGEPPTVDSARSLLTSLFFDPKRYDLANVGRYKIQKKLKHGVLYR 284 Query: 290 E--YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS-----GHKRIETLFTNDLD 342 GK V Y+ + + D++ + G +++ + Sbjct: 285 YGPNPDGKTVFDPYLKKEVPQKREFIRELTKEDIIETIRYLLKLMNGEGQVDDIDHLGNR 344 Query: 343 HGPYISETLRV 353 + E L+ Sbjct: 345 RLRSVGELLQN 355 >UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Tax=cellular organisms RepID=RPOB_SYNJB Length = 1139 Score = 787 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 374/1156 (32%), Positives = 546/1156 (47%), Gaps = 167/1156 (14%) Query: 196 VRIDRRRKLPATIILRALNYTTEQILD-LFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 +I+R R P R Y + + K EI+D + + +P L + +F Sbjct: 67 YKINRPRYDPEEAKRRDATYQAQIRVPTRLINKETGEIKDMDVFIGELP--LMTDRGTFI 124 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 I +V V + R + + + + I + + + G + + Sbjct: 125 INGAERVIVNQIVRSPGVYYKSELDKNGRR-TYSASLIPNRGAWLKFETDKNGLVWVRID 183 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 L L G E ++L H + +T+ + AL+E+YR +RPGE Sbjct: 184 KTRKLSAAVLLKALGLSDSEIY--DNLRHPEFFQKTMEKEGPYTEEEALMELYRKLRPGE 241 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 PPT + L E+ FF RYDL VGR K N+ L E +L+ DI+ V+ LI+ Sbjct: 242 PPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLNLNVAESVRVLTVTDILAVIDYLIN 301 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 + G VDDIDHLGNRR+RSVGE+ +NQ RVGL R+ER ++ER+++ + + L P ++N Sbjct: 302 LEYDIGHVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESENLTPASLVN 361 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGL+RERAGF VRD+HP+H Sbjct: 362 PKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFAVRDIHPSH 421 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 YGR+CPIETPEGPN GLI SL+ +A+ N+YGF+E+PY +V +GVV ++ Sbjct: 422 YGRICPIETPEGPNAGLIGSLATHARVNQYGFIESPYYRVENGVVRKDLGM--------- 472 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 + D+ D V+ V Sbjct: 473 ----------------------------VYLTADEEDEYRVAPGDVPVDAEG-------- 496 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 + A++ VP + E + V ++ ++ +++ Sbjct: 497 -----RITADL----VPVRYRQEFTTAHPTEVHYVQVAPVQVISVATSLIPFLEHDDANR 547 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + M L K R T + G V Sbjct: 548 ALMGANMQRQAV-----PLLKPDRPYVGTGLEAQAARDSGMVVVS--------------- 587 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 N V ++ + V R G + Sbjct: 588 --RTNGVVTYVSAD----------------------------EIVVRPDDGGDPIVYRLQ 617 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 + L++ +VY G V G +L +L + +L A + + + Sbjct: 618 KYQRSNQDTCLNQRPLVYTGDRVVAGQVL-ADGPATEGGELALGQNVLVAYMPWEGYNYE 676 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL----SEELQILEAG 970 D+ L +S ++ VFT +EK + ++ ++ +++ + L+ L+ Sbjct: 677 DAIL-----ISERLVYDDVFTSVHIEKHEIEARQTKLGPEEITREIPNVGEDALRDLDEN 731 Query: 971 LFSRIR------AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE 1024 RI +LV + D+ P +R L ++ + + L E Sbjct: 732 GIVRIGAWVEAGDILVGKVTPKGESDQPPEERLLRAIFGEKARDVRDNSLRVPNGERGRV 791 Query: 1025 FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 + ++ + QGD+L PG +V+VY+A+KR+IQ GDK+AGRHGNKG+IS+I PIED Sbjct: 792 VDVRIFTR----EQGDELPPGANMVVRVYIALKRKIQVGDKIAGRHGNKGIISRILPIED 847 Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MPY +GTPVD+VLNPLGVPSRMN+GQ+ E LG AA+ +G + M + + Sbjct: 848 MPYLADGTPVDVVLNPLGVPSRMNVGQVYECLLGWAAEHLGVRFKLMPFDEMHGLEASRL 907 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 A A+E K+ + + Sbjct: 908 TVEAKLR-------------------------------------EAREKTGKDWIFNPEG 930 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 G+I+++DGRTGE F++PVTVG YMLKL HLVDDK+HARSTG YSLVTQQPLGGKAQ Sbjct: 931 KYCGKIQVFDGRTGEPFDQPVTVGRAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQ 990 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 GGQRFGEMEVWALEA+GAAY LQE+LTVKSDD+ GR + IV G PG PESF Sbjct: 991 QGGQRFGEMEVWALEAFGAAYILQELLTVKSDDMVGRNEALNAIVKGKPIPRPGTPESFK 1050 Query: 1325 VLLKEIRSLGINIELE 1340 VL++E++SL +++ + Sbjct: 1051 VLVRELQSLCLDVSVH 1066 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 105/362 (29%), Positives = 161/362 (44%), Gaps = 41/362 (11%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY----------VS 72 P L+ IQ +SF F+ + G E S PI Y+G EL + Sbjct: 13 TFPDLVEIQRESFLWFLRE------GFEEELLSFSPIIDYTGKLELHFLPEYRPGDPSKG 66 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 Y++ P +D +E + R TY A +RV RL+ E +IK+ +V++GE+PLMTD Sbjct: 67 YKINRPRYDPEEAKRRDATYQAQIRVPTRLINKE-------TGEIKDMDVFIGELPLMTD 119 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 GTF+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE D Sbjct: 120 RGTFIINGAERVIVNQIVRSPGVYYKSELDK---NGRRTYSASLIPNRGAWLKFETDKNG 176 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPE 244 ++VRID+ RKL A ++L+AL + +I D F+ + + MEL + Sbjct: 177 LVWVRIDKTRKLSAAVLLKALGLSDSEIYDNLRHPEFFQKTMEKEGPYTEEEALMELYRK 236 Query: 245 RLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 GE + + + R R R + L + +V+ I Sbjct: 237 LRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLNLNVAE----SVRVLTVTDI 292 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG-PYISETLRVDPTNDRLS 361 LI +D + L + + L N + G + +R T Sbjct: 293 LAVIDYLINLEYDIGHVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESE 352 Query: 362 AL 363 L Sbjct: 353 NL 354 >UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax=Borrelia RepID=RPOB_BORHD Length = 1155 Score = 785 bits (2028), Expect = 0.0, Method: Composition-based stats. Identities = 454/1051 (43%), Positives = 647/1051 (61%), Gaps = 68/1051 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD------PEGQYGLEAAFRSVFPIQSY 62 KR+ GK ++LD+P L+ IQL+S++KF++ + P GLE+ FR VFP++S Sbjct: 3 KRVHLGQGKAEEILDLPNLIEIQLNSYEKFLQLERLKTNRPLLNEGLESVFRDVFPMKSS 62 Query: 63 SGNSELQYVSYRLGE--PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G L+Y Y + F +EC+ +G +Y A L+++L L T +I+++ Sbjct: 63 NGEVALEYEKYYIEYNSLSFTEKECKRKGQSYEAVLKIRLNLQFL-------TTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMTD GTF++NG ERVIVSQ+HRSPGV F +K LY ARIIPYR Sbjct: 116 DVYMGTIPLMTDRGTFIVNGAERVIVSQIHRSPGVVFYKEKD--------LYYARIIPYR 167 Query: 181 GSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D KD L+V+IDR++++ T+ LRAL T + I++ F++ E+ ++ Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILVTLFLRALGLNTRERIIETFYKIRKIEVNEDT-- 225 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + G+ + +I + G +IT + I ++ VK I++ +++ V Sbjct: 226 ----KREITGQYLATNIIIKENMTYRAGDKITLQDIEDFLQNGVKEIDL-IDFDGYDSVP 280 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + S L C + L + Sbjct: 281 GKHFISSDVILNCFEKEDAYFSLKDGFKEL-----------------------------S 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R S ++ +Y ++ PGEP + + AES N+FFSE RYDL VGR K ++ +++ S Sbjct: 312 RESVMLAVYSVLLPGEPISIDNAESDLRNVFFSEKRYDLGHVGRYKLSKKFGLDDLTTS- 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DI++ + L+ I +G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMTDIVNTISHLLRIYDGHDVLDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ YA+ N+YGFLETPYRKV DG Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYAKVNDYGFLETPYRKVVDGK 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VTDEI YLSAI+E IAQAN+ ++ EG++++DL++ R G+ + +DYMDVS + Sbjct: 551 VTDEIEYLSAIDEEKKCIAQANAAVNAEGNYIDDLISVRVSGDYTTMIPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGMER VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGTGMERIVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G+V + +IVI+ + + +D Y L KY R+NQ+T N V G+ V Sbjct: 671 KRSGIVVLATSKKIVIRPEDAA---DDHDLDEYELAKYERTNQDTSFNHSVLVKEGQVVN 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +G+++ADGP+T GE+ALG N+ V F+PWNG+N+ED+IL+SER+++ED +T+IHI+E + Sbjct: 728 KGEIIADGPATRYGEVALGNNLLVGFIPWNGFNYEDAILISERIIKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++TADIPNV L+KLDE+GIV IG V GDIL+GKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTADIPNVSGKILNKLDENGIVRIGTYVKPGDILIGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG-VEKDKRALEIEEMQLKQAK 957 KLL +IFGEKA DVK++SL+VP+G GTVIDVQ T+D EI ++ + + + Sbjct: 848 FKLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKDDVSNLPPGVDEILKVYIAKKR 907 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 K + G + +L + D P D L L + N + + Q Sbjct: 908 KLKEGDKMAGRHGNKGVVAKILPVEDMPY-LADGTPLDICLN-PLGVPSRMNIGQLMESQ 965 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + + + + + + K Sbjct: 966 LGLAGKYLGEYYDVPVFESATNECIQEKLKK 996 >UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Tax=Spirochaetaceae RepID=RPOB_BORAP Length = 1155 Score = 772 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 448/1051 (42%), Positives = 640/1051 (60%), Gaps = 68/1051 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ------YGLEAAFRSVFPIQSY 62 KR+ G+ ++LD+P L+ IQL+S++KF++ D GLE+ FR++FPI+S Sbjct: 3 KRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKNKKPLLNEGLESVFRNIFPIKSG 62 Query: 63 SGNSELQYVSYRLGEPV--FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G+ L+Y Y + F +EC+ +G +Y A L+V+L L T +I+++ Sbjct: 63 NGDVALEYERYYIENDTLNFTEKECKRKGQSYEAVLKVRLNLQFL-------TTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMT+ GTF+ING ERVIVSQ+HRSPGV F +K LY+ARIIPYR Sbjct: 116 DVYMGTIPLMTERGTFIINGAERVIVSQIHRSPGVVFYKEKD--------LYSARIIPYR 167 Query: 181 GSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D KD L+V+IDR++++ T+ LRAL + T + I++ F+ ++ + Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILITLFLRALGFDTREKIIETFYNIKKIKVEEGT-- 225 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 L G+ + I +Y G +IT + + ++ V IE+ V Sbjct: 226 ----KRDLPGQYLAKSINIRENMYYRAGDKITLQDVEDFLQNGVNEIELVDFDGYNDVSG 281 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 K ++ + D L Sbjct: 282 KYFVSSNVILNCLE-----KEDAFFALKDGS-------------------------KELP 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + S ++ +Y + PGEP + + AE+ + +FFSE RYDL VGR K ++ + + Sbjct: 312 KESVMLAVYGALFPGEPISIDNAENDLKTIFFSERRYDLGRVGRYKLSKKFGSD-DLSTS 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DDI++ + L+ I G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMDDIVNTISHLLRIYEGHDILDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ Y++ N+YGFLETPYRKV +G Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYSRVNDYGFLETPYRKVVNGE 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT+E+ YLSAI+E IAQAN+ + +G ++EDLV+ R G+ + + +DYMDVS + Sbjct: 551 VTNELEYLSAIDEEKKCIAQANAAFNSDGKYLEDLVSVRISGDYTTTNPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGME VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVGTGMESVVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G V +++IV+K E E +D Y++ KY R+NQ+TC NQ V G+ VE Sbjct: 671 KRSGEVILATSNKIVVKPFESENVKD---LDEYHIVKYERTNQDTCFNQSVLVKEGQKVE 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 RG+++ADGP+T GELALG N+ + +PWNG+N+ED+IL+S+R+V+ED +T+IHI+E + Sbjct: 728 RGEIIADGPATRYGELALGNNLLLGVIPWNGFNYEDAILISDRIVKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++T DIPNV E L+KLDE+GI+ IG V GDILVGKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTGDIPNVSEKILNKLDENGIIRIGTYVKPGDILVGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG-VEKDKRALEIEEMQLKQAK 957 +LL +IFGEKA DVK++SL+VP+G GTVIDVQ T++ EI ++ + + + Sbjct: 848 FRLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKEDVGNLSPGVEEILKVYVAKKR 907 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 K + G + +L + D P D L L + N + + Q Sbjct: 908 KLKEGDKMAGRHGNKGVVAKILPVEDMPY-LADGTPLDICLN-PLGVPSRMNIGQLMESQ 965 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + + + + + K Sbjct: 966 LGLAGKYLSESYNVPVFESATNEQIQEKLKK 996 >UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacteria (class) RepID=C7M2W5_ACIFD Length = 1181 Score = 765 bits (1976), Expect = 0.0, Method: Composition-based stats. Identities = 397/1191 (33%), Positives = 575/1191 (48%), Gaps = 152/1191 (12%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPAT-IILRALNYTTEQILD-LFFEKVIFEIRDNKLQMEL 241 L+ E+DP D + K A + + Y + F + +EI+ + M Sbjct: 60 LELEYDPSDPDLAPV---PKFSAEECREKDMTYAGPIFVRARFLNRQTYEIKQQIVFMGD 116 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 P L + +F I +V V + R + V + ++ Sbjct: 117 FP--LMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQHT---VVTATINPYRGEWLEF 171 Query: 302 IDESTGELICAAN----MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 E+ A + L L L +G L + + D + Sbjct: 172 DVEARPGRDINAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQWAKEDHSQ 231 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI--- 414 R AL+E++R +RPGEP EAA FE FF RYDL+ VGR K ++ L E Sbjct: 232 TRDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRLSAEIERVE 291 Query: 415 -----------EGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGEMAE 461 E +LS+ DII ++ + G+ DD DH NRR+RSVGE+ + Sbjct: 292 EILGHPLDRTSESPLVLSRADIIATASYMLHLVAGEPGYRFDDQDHFSNRRVRSVGELIQ 351 Query: 462 NQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 NQ ++GL R+ER V+ER++ D++ + PQ +IN +P+ AA+KEFF +SQLSQFMDQNNPL Sbjct: 352 NQLKIGLSRLERLVRERMTTQDVEAITPQSLINIRPVVAAIKEFFSTSQLSQFMDQNNPL 411 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 S + HKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ YA+ Sbjct: 412 SGLAHKRRLSALGPGGLSRERAGFEVRDVHSSHYGRMCPIETPEGPNIGLIGALASYARL 471 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK-- 639 N YGF+ETPYR+V DG VTDE+ YL+A EE +YVIAQAN+ LD EG FVE V R Sbjct: 472 NRYGFIETPYRRVVDGKVTDEVVYLTADEEEDYVIAQANAKLDAEGRFVEPKVLVRRGPQ 531 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 G V Y S + Sbjct: 532 GAVVRVGAMAVSYGATSEVE---------------------------------------- 551 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + T E + S V+ ++ +V+ + M Sbjct: 552 LATPDEVDLMDVSPAQVVSVSTSLIPFVEHDDANRALMGANMQKQAVP------------ 599 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDL-GELALGQNMRVAFMPWNGYNFEDSILV 818 + + P V G G D + G ++ +A ++ Sbjct: 600 ---LLVPEAPFVGTGVEARAGLDAGDVLVAEGPGVVSEVTGASIAV-TYDD--------- 646 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 V +D + + + ++ V G V Sbjct: 647 ---SVTDDAGRPLGTRRY---------------WLTKFQRSNQNTCWNQRPTVATGDRVE 688 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 GD+L +L + LL A + + +D+ + +S ++ V + Sbjct: 689 LGDVLADGPATMH-GELALGKNLLVAFMPWEGYNFEDAII-----ISERLVRDDVLSSLH 742 Query: 939 VEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEK 988 +E+ + ++ ++ +D+ +E I+ G +LV + Sbjct: 743 IEEFETDARDTKLGAEEITRDIPNLSEEALADLDERGIVRIGAEVGPGDILVGKVTPKGE 802 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + P +R L ++ ++ + L + E + K+ + +L PGV + Sbjct: 803 TELTPEERLLRAIFGEKSREVRDTSLRVPHGEYGKVIDVKVFTR----EDATELPPGVNE 858 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 +V+VY+A R+IQ GDK+AGRHGNKGVIS+I PIEDMP E+GTPVDI+LNPLGVPSRMN Sbjct: 859 LVRVYVAQHRKIQVGDKLAGRHGNKGVISRILPIEDMPRLEDGTPVDIILNPLGVPSRMN 918 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 IGQ+LE HLG AA+ + I ++ ++ + D + + + E Sbjct: 919 IGQVLEAHLGYAARWGWEPIGEGAREHRKTRPVTVP------ARWVASPAFDGAHWDESE 972 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 +++ + P ++ E L + G+ LY+GRTGE+++ PV VG Sbjct: 973 EAGDLPTIKELLERLNP------QSRDGERL----VQPDGKAVLYNGRTGERYDNPVMVG 1022 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 Y+YMLKL H+VDDK+HARSTG YS++TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQ Sbjct: 1023 YVYMLKLAHMVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQ 1082 Query: 1289 EMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 E+LT+KSDDV GR K+Y+ IV G++ EPG+PESF VL+KE++SL +N+E+ Sbjct: 1083 ELLTIKSDDVVGRVKVYEAIVKGDNIPEPGIPESFKVLIKEMQSLCLNVEV 1133 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 147/345 (42%), Gaps = 42/345 (12%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 + R F VL +P L+++Q DSF+ F+ GL AFR + PI+ YS Sbjct: 2 ITRHRPPERFSFASARNVLPLPDLIAVQRDSFRWFL------NEGLAEAFRDISPIEDYS 55 Query: 64 GNSELQYV----SYRLGE-PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 G L+ L P F +EC+ + +TY+ P+ V+ R +IK Sbjct: 56 GQLALELEYDPSDPDLAPVPKFSAEECREKDMTYAGPIFVRARF-------LNRQTYEIK 108 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 +Q V+MG+ PLMTD GTF+INGTERV+VSQL RSPGV F + + + A I P Sbjct: 109 QQIVFMGDFPLMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQH-----TVVTATINP 163 Query: 179 YRGSWLDFEFDPKDNLFV----RIDRRRKLPATIILRALNYTTEQILDLF---------- 224 YRG WL+F+ + + + R+ R+R+L +LRA L+ Sbjct: 164 YRGEWLEFDVEARPGRDINAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQ 223 Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDV 282 + K + ME+ GE + + + + R R R + Sbjct: 224 WAKEDHSQTRDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRL 283 Query: 283 KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 VE I G + + + ++ A++ + + L Sbjct: 284 SAEIERVEEILGHPLDR---TSESPLVLSRADIIATASYMLHLVA 325 >UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3X7_DESAS Length = 1227 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 426/1056 (40%), Positives = 597/1056 (56%), Gaps = 129/1056 (12%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MVY+ R R +FGK +VLD+P L+ +Q +S++ F++ GL F + PIQ Sbjct: 4 MVYAEKLGTRERLNFGKFKEVLDLPNLIEVQRNSYKWFLKN------GLREVFHDISPIQ 57 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 58 DFTGNLVLEFLDYTLGEPKYFVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 110 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+F SGK L++A IIP R Sbjct: 111 EVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFAEQIDP---SGKKLFSATIIPNR 167 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL-DLFFEKVIFEI------- 232 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y+++ ++ + F E + Sbjct: 168 GAWLEFETDVNDHVFVRIDRTRKIPATVLIRALGYSSDAMVMEEFGEDKNIQETLSRDNT 227 Query: 233 -RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + +E+ GE + + ++ + R A R + Sbjct: 228 GSEEDALVEIYKRLRPGEPPTVESARTLLETLFFDPKRYDLANVGRYKLHKKL------- 280 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 V Y +E +G + E L +I E Sbjct: 281 ----QHGVLYRYPEEQSG---------------------KIEYDEILKQELPVEREFIRE 315 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 D + L + + +P R Y + + L Sbjct: 316 LTPKDILDTIKYLLRLVQGITEEKDPLGR-------------NIEYTVDDI------DHL 356 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 + G L ++ + ++ + + + D+D Sbjct: 357 GNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDVD----------------------- 393 Query: 470 RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 + PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR Sbjct: 394 ----------------VITPQVLINIRPVVASIKEFFGSSQLSQFMDQTNPLAELTHKRR 437 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ N++GF+ET Sbjct: 438 LSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARINQFGFIET 497 Query: 590 PYRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 PYR+V +VT+EI YL+A E +IAQAN+ L++EG F E V R E Sbjct: 498 PYRRVDKEKRIVTNEIEYLTADVEDRNIIAQANAPLNKEGFFTEQAVNARHGHEILKVPG 557 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 +++D+MDVS +QV S+ +LIPFLEHDDANRALMGANMQRQAVP ++A P+VGTG+E Sbjct: 558 EKIDFMDVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAVPLVKAQAPVVGTGVEYK 617 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 A DSGV +A++ G+V+ V A+ I+I+ ++ D + L K+TRSNQ TCINQ Sbjct: 618 AARDSGVVPLARKSGIVEKVTANDIMIRSDD-------GTSDYHKLLKFTRSNQGTCINQ 670 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V+ G+ V+ GD++ADGP+TD GELALG+N+ VAFMPW+GYN+ED+IL+SE+ V+ED Sbjct: 671 RPIVTKGQRVDEGDIIADGPATDNGELALGRNILVAFMPWDGYNYEDAILISEKAVKEDF 730 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI+E C +RDTKLGPEEIT DIPNVGE L LD+ GI+ +GAEV GDI+VGKV Sbjct: 731 FTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDIMVGKV 790 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRAL 946 TPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G +G ++DV+VF+R +G E Sbjct: 791 TPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFSRDNGDELPPGVN 850 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 + + + Q +K + G + ++ + D P + L L Sbjct: 851 HLVRVYIAQKRKISVGDKMAGRHGNKGVVARIMPEEDMPF-LPDGTPIEIVLN-PLGVPS 908 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + N + L + + D+ Sbjct: 909 RMNIGQVLETHLGWAARKLGCYVSTPVFNGATESDI 944 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 387/1200 (32%), Positives = 557/1200 (46%), Gaps = 223/1200 (18%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILD-LFFEKVIFEIRDNKLQMELVPERLRGET 250 + L + + R + Y + K E+++ ++ M P L E Sbjct: 66 EFLDYTLGEPKYFVEECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFP--LMTEK 123 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 +F I +V V + R + + K + I + ++ + + Sbjct: 124 GTFIINGAERVIVSQLVRSPGVYFAEQIDPSGKKL-FSATIIPNRGAWLEFETDVNDHVF 182 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + + + G+ + + I ETL D T ALVEIY+ + Sbjct: 183 VRIDRTRKIPATVLIRALGYSSDA-MVMEEFGEDKNIQETLSRDNTGSEEDALVEIYKRL 241 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE----------------- 413 RPGEPPT E+A +L E LFF RYDL+ VGR K ++ L Sbjct: 242 RPGEPPTVESARTLLETLFFDPKRYDLANVGRYKLHKKLQHGVLYRYPEEQSGKIEYDEI 301 Query: 414 --------IEGSGILSKDDIIDVMKKLIDIRNGKGE------------VDDIDHLGNRRI 453 E L+ DI+D +K L+ + G E VDDIDHLGNRR+ Sbjct: 302 LKQELPVEREFIRELTPKDILDTIKYLLRLVQGITEEKDPLGRNIEYTVDDIDHLGNRRL 361 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 RSVGE+ +NQFR+GL R+ER V+ER+++ D+D + PQ +IN +P+ A++KEFFGSSQLSQ Sbjct: 362 RSVGELLQNQFRIGLSRMERVVRERMTIQDVDVITPQVLINIRPVVASIKEFFGSSQLSQ 421 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 FMDQ NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI Sbjct: 422 FMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIG 481 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 SLS YA+ N++GF+ETPYR+V D+E V + Sbjct: 482 SLSTYARINQFGFIETPYRRV-----------------------------DKEKRIVTNE 512 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL-MGANMQRQAVPT 692 + E + + + AN L QAV Sbjct: 513 I------EYLTADVEDRNII--------------------AQANAPLNKEGFFTEQAVNA 546 Query: 693 LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN 752 + L G + S + ++ +++ + M Sbjct: 547 RHGHEILKVPGEKIDFMDVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAV------ 600 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 P V PV G + + D G + L + + Sbjct: 601 ----------------PLVKAQAPVV-GTGVEYKAARDSGVVPLARKSGI---------- 633 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 V++ I I+ G + + + +++ IV Sbjct: 634 ----------VEKVTANDIMIRSDD--------GTSDYHKLLKFTRSNQGTCINQRPIVT 675 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 G V GDI + +L +L A + +D+ L + Sbjct: 676 KGQRVDEGDI-IADGPATDNGELALGRNILVAFMPWDGYNYEDAILISEKA-----VKED 729 Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAG 982 FT +E+ + ++ ++ +D+ ++ I+ G R ++V Sbjct: 730 FFTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDIMVGK 789 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + + +R L ++ ++ + L + E + K+ ++ GD+L Sbjct: 790 VTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFSR----DNGDEL 845 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 PGV +V+VY+A KR+I GDKMAGRHGNKGV+++I P EDMP+ +GTP++IVLNPLG Sbjct: 846 PPGVNHLVRVYIAQKRKISVGDKMAGRHGNKGVVARIMPEEDMPFLPDGTPIEIVLNPLG 905 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 VPSRMNI G + L Sbjct: 906 VPSRMNI---------------GQVLETHLGWAA-------------------------- 924 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + G ++TPVF+GA E++I E L+ DLP + + L+DGRTGE F+ Sbjct: 925 -------------RKLGCYVSTPVFNGATESDILEFLRKADLPDTAKTTLHDGRTGEPFD 971 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 P+TVGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG Sbjct: 972 NPITVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1031 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 +AYTLQE+LTVKSDDV GR K Y+ IV G + EPG+PESF VL+KE++SLG+++++ E Sbjct: 1032 SAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGLDVKVLSE 1091 >UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB9_THET1 Length = 1203 Score = 761 bits (1965), Expect = 0.0, Method: Composition-based stats. Identities = 447/1137 (39%), Positives = 618/1137 (54%), Gaps = 175/1137 (15%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 K RK + + P +++P L+ IQLDSF F + GL+ F + P+ ++G Sbjct: 17 PASKVQRKSYARIPDTIEMPNLIQIQLDSFNWF------KEEGLQELFDEINPVVDFTGR 70 Query: 66 -SELQYVSY----RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 EL++ GEP + +EC+ R TYSAPL+VK L++ E +IKEQ Sbjct: 71 LMELRFDKPDSGQFFGEPRYTEKECRERDFTYSAPLKVKATLLVKE-------TGEIKEQ 123 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 E+++G+ PLMT+ GTFVING ERV+VSQL RSPGV+F + +SGK L+ A++IP R Sbjct: 124 EIFLGDFPLMTEKGTFVINGAERVVVSQLVRSPGVYFKDVFDE--ASGKTLWTAKLIPNR 181 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 G+WL+FE KD L+V++DR+RK+P T++LRA+ ++++ + ++ Sbjct: 182 GAWLEFETSNKDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVEAEGDMGPTTPGTDEWLWA 241 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 L + R + +A Sbjct: 242 LYGKVSRDGR-------------------------------------------YQNLAAT 258 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + T + E ++L +L ++ + L DP Sbjct: 259 IERDPT-----KNSQEALVELYRRLRPGDPPN--------PENARTLLRQLLFDP-RRYD 304 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 A V Y++ R E A S + +D R+ E + Sbjct: 305 LARVGRYKLTRKWEQLREVVARS-------NGPTFDFEIDSRV---------YGERLRTI 348 Query: 421 SKDDIIDVMKKLIDIRN----GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 + D+I+++ LI + N + E DDIDHLGNRR+R+VGE+ +NQFRVGL+R+ER +K Sbjct: 349 TGRDLINIVGNLIRLNNLPPGSEEEGDDIDHLGNRRVRAVGELIQNQFRVGLLRMERVIK 408 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+S+ D ++ P ++IN +P+ AA++EFFG SQLSQFMDQ N LSEI HKRR+SALGPG Sbjct: 409 ERMSIQDAESATPNNLINIRPVVAAMREFFGGSQLSQFMDQVNALSEINHKRRLSALGPG 468 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL+R+RAG +VRDVHP+HYGR+CPIETPEGPNIGLI L+ YA+ NEYGF+ETPYRKV Sbjct: 469 GLSRDRAGLDVRDVHPSHYGRICPIETPEGPNIGLIGQLATYARINEYGFIETPYRKVVK 528 Query: 597 G-----------------------------------------------------VVTDEI 603 V +E+ Sbjct: 529 SVPGDSIDAMVGHITREPIMDSNGQEVVPVGTEITREVAEKIVALGLDEIKVKPRVLNEV 588 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR-----SKG--ESSLFSRDQVDYMDVS 656 YLSA E + +AQANS LDE G+F+ED V R +G E + D+VDY+D S Sbjct: 589 EYLSADREDLFTVAQANSPLDERGYFLEDRVEARASIRLRRGGTEFMIVPVDEVDYVDAS 648 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 +QVVSV +SLIPFLEHDDANRALMGANMQRQAVP L D P+VGTG+E VA DSG Sbjct: 649 PKQVVSVASSLIPFLEHDDANRALMGANMQRQAVPLLVPDSPVVGTGVEAQVARDSGQVV 708 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 +AK G+V+ V A RIV++ ++ + Y L K+ R+NQ+T +NQ P V+ G+ Sbjct: 709 IAKADGIVRSVTAERIVVEEDDGNLR-------TYELEKFVRTNQDTLLNQRPIVNKGDR 761 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 + G ++AD ST GE+ALGQN+ VAFMPW G NFED++L+SER+V++D +T+IHI++ Sbjct: 762 IYAGQIIADSASTSNGEIALGQNVLVAFMPWEGGNFEDAVLISERLVRDDVYTSIHIEKY 821 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 +RDTKLGPEEIT DIPNVGE AL+ LDE GIVY+GAEV DILVGKVTPKGET++T Sbjct: 822 EVEARDTKLGPEEITRDIPNVGEEALANLDERGIVYVGAEVKPNDILVGKVTPKGETEMT 881 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK-RALEIEEMQLKQ 955 EE+LLRAIF EKA DV+D+SLRVPNGV G VIDV+VFTR + ++ + + Q Sbjct: 882 AEERLLRAIFSEKARDVRDTSLRVPNGVHGQVIDVKVFTRVENDDLPAGVNQMVRVMIAQ 941 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 +K + G I +L + D P D L + + N + L Sbjct: 942 KRKISEGDKVAGRHGNKGVISRILPIEDMPF-LPDGRPVDVILN-PIGVPSRMNLGQILE 999 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLA-----PGVLKIVKVYLAVKRRIQPGDKMA 1067 K+ + + G+ + K+ L R G+K Sbjct: 1000 CHLGWAASTLGFKVACPVFDGASEEMIKEELRRAGLPEDGKIELYDGRT---GEKFD 1053 Score = 721 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 381/1241 (30%), Positives = 560/1241 (45%), Gaps = 201/1241 (16%) Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEI 232 ++ + G ++ FD D+ R R Y+ ++ K EI Sbjct: 62 NPVVDFTGRLMELRFDKPDSGQF-FGEPRYTEKECRERDFTYSAPLKVKATLLVKETGEI 120 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 ++ ++ + P L E +F I +V V + R + + + + + I Sbjct: 121 KEQEIFLGDFP--LMTEKGTFVINGAERVVVSQLVRSPGVYFKDVFDEASGKTLWTAKLI 178 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL---------------- 336 + ++ + L + + + + L E + Sbjct: 179 PNRGAWLEFETSNKDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVEAEGDMGPTTPGTDEW 238 Query: 337 ------FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFF 390 + ++ T+ DPT + ALVE+YR +RPG+PP E A +L L F Sbjct: 239 LWALYGKVSRDGRYQNLAATIERDPTKNSQEALVELYRRLRPGDPPNPENARTLLRQLLF 298 Query: 391 SEDRYDLSAVGRMKFNRSL--------------------LREEIEGSGILSKDDIIDVMK 430 RYDL+ VGR K R R E ++ D+I+++ Sbjct: 299 DPRRYDLARVGRYKLTRKWEQLREVVARSNGPTFDFEIDSRVYGERLRTITGRDLINIVG 358 Query: 431 KLIDIRN----GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT 486 LI + N + E DDIDHLGNRR+R+VGE+ +NQFRVGL+R+ER +KER+S+ D ++ Sbjct: 359 NLIRLNNLPPGSEEEGDDIDHLGNRRVRAVGELIQNQFRVGLLRMERVIKERMSIQDAES 418 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 P ++IN +P+ AA++EFFG SQLSQFMDQ N LSEI HKRR+SALGPGGL+R+RAG + Sbjct: 419 ATPNNLINIRPVVAAMREFFGGSQLSQFMDQVNALSEINHKRRLSALGPGGLSRDRAGLD 478 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV-------V 599 VRDVHP+HYGR+CPIETPEGPNIGLI L+ YA+ NEYGF+ETPYRKV V + Sbjct: 479 VRDVHPSHYGRICPIETPEGPNIGLIGQLATYARINEYGFIETPYRKVVKSVPGDSIDAM 538 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEE--GHFV-----EDLVTCRSKGESSLFSRDQVDY 652 I ++ + + + E V E V R E S D+ D Sbjct: 539 VGHITREPIMDSNGQEVVPVGTEITREVAEKIVALGLDEIKVKPRVLNEVEYLSADREDL 598 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGAN-MQRQAVPTLRADKPLVGTGMERAVAVD 711 V+ FLE RA + + + + V Sbjct: 599 FTVAQANSPLDERGY--FLEDRVEARASIRLRRGGTEFMIVPVDEVDYVDA--------- 647 Query: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 S V+ ++ +++ + M + P V Sbjct: 648 SPKQVVSVASSLIPFLEHDDANRALMGANMQRQAVP---------------LLVPDSPVV 692 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 G + + +A + ++ Sbjct: 693 GTGVEAQVAR--------------DSGQVVIAKA-------------------DGIVRSV 719 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 + + D L E+ V + L++ IV G + G I + Sbjct: 720 TAERIVVEEDDGNLRTYEL---EKFVRTNQDTLLNQRPIVNKGDRIYAGQI-IADSASTS 775 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 ++ + +L A + + +D+ L +S ++ V+T +EK + ++ Sbjct: 776 NGEIALGQNVLVAFMPWEGGNFEDAVL-----ISERLVRDDVYTSIHIEKYEVEARDTKL 830 Query: 952 QLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 ++ +D+ +E I+ G + +LV + + +R L Sbjct: 831 GPEEITRDIPNVGEEALANLDERGIVYVGAEVKPNDILVGKVTPKGETEMTAEERLLRAI 890 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 +++ + + L + K+ + DDL GV ++V+V +A KR+I Sbjct: 891 FSEKARDVRDTSLRVPNGVHGQVIDVKVFTRVE----NDDLPAGVNQMVRVMIAQKRKIS 946 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK+AGRHGNKGVIS+I PIEDMP+ +G PVD++LNP+GVPSRMN Sbjct: 947 EGDKVAGRHGNKGVISRILPIEDMPFLPDGRPVDVILNPIGVPSRMN------------- 993 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G + L G Sbjct: 994 --LGQILECHLGWAASTL---------------------------------------GFK 1012 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 +A PVFDGA E IKE L+ LP G+I LYDGRTGE+F++PV VG MY++KL HLV+D Sbjct: 1013 VACPVFDGASEEMIKEELRRAGLPEDGKIELYDGRTGEKFDQPVAVGVMYIMKLAHLVED 1072 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD GR Sbjct: 1073 KIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDTVGR 1132 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + Y+ IV G G+PESF VL+KE++SLG+++E+ +E Sbjct: 1133 VRTYEAIVKGEPISGAGVPESFKVLMKELQSLGLSVEVLNE 1173 >UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridia RepID=RPOB_CARHZ Length = 1132 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 404/912 (44%), Positives = 545/912 (59%), Gaps = 49/912 (5%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILD-LFFEKVIFEIRDNKLQMELVPERLRGET 250 + L + + + R Y+ + K EI++ ++ + P L E Sbjct: 62 EFLDYYLGKPKYSVEECKERDFTYSAPLRVKVRLLNKETGEIKEQEVFLGDFP--LMTEK 119 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 +F +V + + R + + + K + + I + ++ + + Sbjct: 120 GTFIFNGAERVVISQMVRSPGVYFSEQVDPNGKKMYL-ATIIPNRGAWLEFETDVNDHIY 178 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + L + L G++ + DH I TL D T+ R AL+EIY+ + Sbjct: 179 VRIDRTRKLPVTVLLKALGYESKGRIAEL-FDHDDKIIATLERDNTDSREEALIEIYKKL 237 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE----------------- 413 RPGEPPT E+A++L +++FF RYDL VGR K + L Sbjct: 238 RPGEPPTVESAKTLLDSMFFDPKRYDLGNVGRYKLFKKLNHGVLYRYLEEDGEKEYDKYL 297 Query: 414 -------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 E L+ +DII ++ L+ + G+G+VDDIDHLGNRR+RSVGE+ +NQFR+ Sbjct: 298 NDYVPVKREFIRELTNEDIIYTIRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQNQFRI 357 Query: 467 GLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITH 526 GL R+ER V+ER+++ D D+L PQ +IN +PI AA+KEFFGSSQLSQFMDQ NPL+E+TH Sbjct: 358 GLARMERVVRERMTIQDADSLTPQVLINTRPIVAAIKEFFGSSQLSQFMDQTNPLAELTH 417 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 KRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ YA+ NE+GF Sbjct: 418 KRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGNLTTYARVNEFGF 477 Query: 587 LETPYRKVTD--GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 +ETPYRKV GVVT+EI YL+A EE Y+IAQAN L EG F++++V R E Sbjct: 478 IETPYRKVDKERGVVTNEIVYLTADEEEKYIIAQANVRLSPEGKFLDEMVNARHGSEILH 537 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 +VD++DVS +QV SV SLIPFLEHDDANRALMGANMQRQAVP +R + P+VGTG+ Sbjct: 538 VEPSKVDFVDVSPKQVFSVATSLIPFLEHDDANRALMGANMQRQAVPLIRTEAPVVGTGI 597 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E A DSGV +AK GVV+ V A IVI+ ++ ++ D Y L K+ RSNQ TC Sbjct: 598 EYKAAKDSGVVVLAKNPGVVERVTADEIVIRNDQGQI-------DRYKLIKFQRSNQGTC 650 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 INQ P V GE VE+ ++ADGPSTD GELALG+N+ VA+MPW GYN+ED+IL+SE++V+ Sbjct: 651 INQKPIVRKGERVEKDQIIADGPSTDHGELALGKNVLVAYMPWEGYNYEDAILISEKLVK 710 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 ED FT+IHI+E C +RDTKLGPEEIT DIPNVGE AL LDE GI+ IGAEV GDILV Sbjct: 711 EDVFTSIHIEEYECDARDTKLGPEEITRDIPNVGEDALKDLDERGIIRIGAEVRPGDILV 770 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDK 943 GKVTPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G SG V+DV+VF+R +G E Sbjct: 771 GKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGKVVDVKVFSRENGDELSP 830 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + + Q +K + G + +L + D P + L L Sbjct: 831 GVNMLVRVYIAQKRKISVGDKMAGRHGNKGVVARILPEEDMPF-LPDGTPVEIVLN-PLG 888 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL-----APGVLKIVKVYLAVKR 1058 + N + L + +D+ G+ + K+ + R Sbjct: 889 VPSRMNIGQILECHLGWAAKALGINVATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGR 948 Query: 1059 RIQPGDKMAGRH 1070 G+ R Sbjct: 949 T---GEPFDSRV 957 >UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Tax=Mycoplasmataceae RepID=RPOB_UREP2 Length = 1434 Score = 752 bits (1941), Expect = 0.0, Method: Composition-based stats. Identities = 455/1471 (30%), Positives = 687/1471 (46%), Gaps = 226/1471 (15%) Query: 2 VYSYTEK----KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF 57 +YTEK K +R+D+ K + P LL IQ++SF++F+E+D L+ S+F Sbjct: 4 NKNYTEKFITDKVMRRDYSKIKSNFEGPNLLEIQVESFKRFMEKD------LKEVISSIF 57 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 P++S G L + ++ +P D C+ G T+ P+ + L L + ++ Sbjct: 58 PLKSPQGKYTLAFKGLKIKQPTKDESACRDEGKTFETPIYIDLELTDNYTGEVKRAQRNT 117 Query: 118 K--EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFD-SDKGKTHSSGKVLYN- 173 K E +Y+G IP MT+ GTFVING E+ ++SQ+ RSPG++ K + S K L+ Sbjct: 118 KTGEDGIYLGAIPKMTEKGTFVINGIEKFVISQIVRSPGIYVLGKSSIKLNGSRKRLFEG 177 Query: 174 --ARIIPYRGSWLDFEFDPKDNLFVRI-------DRRRKLPATIILRALNYTTEQILDLF 224 I P +G+ L + PKD ++I D + T +L+A T+ +IL +F Sbjct: 178 KICEIYPSKGT-LMLGYIPKDRHNIQIVARDSSGDNAQTFSVTTLLKAFGLTSAEILKIF 236 Query: 225 FEKVIFEIR--DNKLQMELVPERLRGETASFDIEANGKVYVEKGRR--ITARHIRQLEKD 280 + K E + E + F I ++ EK R + + + Sbjct: 237 NNEKEIRESLEIEKYAPEYIFENSQENEIIFKIYSDAHDIHEKADRRESNNKLKEEYIEQ 296 Query: 281 DVKLIEVPVEYIAGKVVAKDYID----------------------ESTGELICAANMELS 318 L+ + I V D ID + E+I E + Sbjct: 297 GSPLLSKLKQLIFNYVEKNDEIDALLHENKDVEDASFIKNNKKLYDEREEIINCIISEKA 356 Query: 319 LDLLAKLSQSGHKRIETLF----------------------TNDLDHGPYISETLRVDPT 356 + +L K IETL + + + L + Sbjct: 357 AKDIVELLGINIKNIETLRHLGKASYQIALQQHFFNKRLYDISSAGRYKFEKKLLLSERL 416 Query: 357 NDRLSALVEIYRM---MRPGEPPTREAAESLFENLFFS--------------------ED 393 ++ A I + + P + + L + E Sbjct: 417 YQKVIANDIIDKKNNILIPKDTLITKEHIELIKKESRDKNIKWTKKINLLPTALESEIEQ 476 Query: 394 RYDLSAVGRMKFNR-------SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 + ++ K N + L+ D++ + ++ GE DDID Sbjct: 477 FLEYESIAVYKDNDLRDETTEIVGLASGCKLQTLTVADLVATTSYIYNLNYEIGEFDDID 536 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD--------------- 491 HLGN+R++ + E+ + + R+E+ + E+L++ D + + Sbjct: 537 HLGNKRLKLIHELLRARIATSMARIEKFINEKLAISDGSSNNITNVNDKGIDTELDREIE 596 Query: 492 -----------------MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 +IN K + VK+FF S QL QF+DQ NPL+E+T+KRRISA+G Sbjct: 597 ESDMSDEEKKKAISVKSIINTKQFQSLVKDFFNSHQLIQFIDQQNPLAELTNKRRISAMG 656 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGG++RE ++RDVH +HY R+CPIETPEG NIGLI SL+ A+ +E GF+ PY V Sbjct: 657 PGGISREDPNLDIRDVHHSHYSRICPIETPEGMNIGLIMSLASLAKVDENGFIVAPYYVV 716 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 DGVV ++ YL+A E+ NY+IA+++ LDE +++ V R +G + LFS ++VD++D Sbjct: 717 EDGVVKEDYKYLTAHEDDNYIIAESSVQLDENKRILDEQVVARYRGSTGLFSPNEVDFID 776 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 + +QVVS+ AS IPF+E+DD RALMG+NMQRQA P ++ P+VGTG E +A DSG+ Sbjct: 777 IVPKQVVSIAASAIPFIENDDGARALMGSNMQRQATPLIKPYAPIVGTGTEFKIAHDSGM 836 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 VAK GVV++VD+ +I+I+ + D++ D Y L KY +SNQ+TC NQ+P V +G Sbjct: 837 AVVAKNDGVVEFVDSQKIIIRNDNDKL-------DDYKLIKYRKSNQDTCNNQIPIVKVG 889 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + V + + + DGP+ GELALG+N+ V + W GYNFED+I++SER+V +D FT+IHI Sbjct: 890 QRVHKSETIGDGPAMQNGELALGRNILVGYTTWRGYNFEDAIIISERLVDQDVFTSIHID 949 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 E TK G EEIT D+PNV + A LD GIV +GAEV GD+LVGK TP+G + Sbjct: 950 EHTIQCMKTKNGDEEITRDMPNVSDTAKRFLDNQGIVLVGAEVHEGDVLVGKTTPRGNVE 1009 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF---TRDGVEKDKRALEIEEM 951 PE++LL+ IFG+K+ VKDSSL+V +G G V V+ +G E +EI ++ Sbjct: 1010 TAPEDRLLQTIFGDKSKTVKDSSLKVKHGQEGIVAAVKRIKSSDENGSELPDDVIEIIKV 1069 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + Q +K + G + V+ + D P D L L + N Sbjct: 1070 YIVQKRKIQVGDKMAGRHGNKGIVSKVVPIQDMPF-LKDGTPLDIMLN-PLGVPSRMNIG 1127 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 + L E KK + G + + I K+ Sbjct: 1128 QILELHLGYAAAEIGKKQLIQIAIDQLGYEKYISLFGI---------NEIIAKKLYENIS 1178 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 N + D + V I+L LG++ IG KI+ Sbjct: 1179 NL----IKHKQAKQAKDIDLIDVTIILKE----------------LGLSYDDIGIKISTP 1218 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 + + + A + + K L E FDG Sbjct: 1219 VFDGANHDDIVSIMNEANIDIENNKGKQVLYDGRTGE-----------------PFDG-- 1259 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSY 1251 L L + + V DDK+H+RS G Y Sbjct: 1260 -------LISVGLTYMLK-----------LDHMV--------------DDKIHSRSVGPY 1287 Query: 1252 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDG 1311 S +TQQPLGGK+Q GGQRFGEMEVWALEAYGAAY L E+LT+KSDDV GR + Y I+ G Sbjct: 1288 SKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLLEILTIKSDDVQGRNQAYNAIIKG 1347 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + GMPESF +L K+++ LG+ I +E + Sbjct: 1348 HDVVADGMPESFKLLTKQMQGLGLCITVETK 1378 >UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA polymerase beta subunit n=1 Tax=Hydra magnipapillata RepID=UPI00019270C2 Length = 1140 Score = 749 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 455/819 (55%), Positives = 564/819 (68%), Gaps = 6/819 (0%) Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK-- 283 KV+ E+++ ++ M VP L SF I +V V + R + Sbjct: 118 NKVVKEVKEQEVYMGEVP--LMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSG 175 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + I + D+ + L + + + L G L LD Sbjct: 176 KLLFSARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFLDQ 235 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 G YIS+TLR D T D +A V IYRMMRPGEPPT +A ++LF+ LF++ D YDLS VGRM Sbjct: 236 GAYISQTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRM 295 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 KFN + R E G +L+ +DI+ V+K L+D+RNG+G+VDDIDHLGNRR+R VGE+AENQ Sbjct: 296 KFNAKMGRSESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAENQ 355 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 +R GL R+E+AVKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFM+Q NPL+E Sbjct: 356 YRTGLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMNQTNPLAE 415 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ITHKRR+SALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL++YA+ NE Sbjct: 416 ITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNE 475 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 YGF+ETPYR+V D VT+EI YLSAIEEG YVIAQAN+ LD+EG DLV+ R KGES Sbjct: 476 YGFIETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKEGTLTGDLVSAREKGESI 535 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 L S D+V YMDVS Q+VSV ASL+PFLEHDDANRALMGANM RQAVP LR +KP+VGTG Sbjct: 536 LVSADRVQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPMVGTG 595 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 +ER AVDSG A RGG+V YVDA+R+VI+VN+ E GE G+DIYNL KY RSNQNT Sbjct: 596 IERVAAVDSGTVVTATRGGIVDYVDATRVVIRVNDAEAQAGEVGVDIYNLIKYQRSNQNT 655 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 I+Q P V G+ + +GDV+ADG STDLGE+A+GQNM VAFMPWNGYNFEDSIL+SERVV Sbjct: 656 NIHQRPIVKKGDKLSKGDVIADGASTDLGEIAIGQNMLVAFMPWNGYNFEDSILISERVV 715 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 EDR+T+IHI+EL ++RDTKLG EEIT DIPN+ E L++LDESGI+Y+GAEV GD L Sbjct: 716 AEDRYTSIHIEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVLPGDTL 775 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 VGKVTPKGET LTPEEKLLRAIFGEKASDVKD+SLRV G SGTVIDVQVFTR+G E Sbjct: 776 VGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGDELPA 835 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 L++ ++ + ++ + G + + + D P D L L Sbjct: 836 GVLKMVKVYIAVKRRLQPGDKMAGRHGNKGVVSKITPVEDMPY-LADGTPVDIVLN-PLG 893 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + N + L +++ ++ ++ Sbjct: 894 VPSRMNIGQVLEVHLGWAGKGLGQRIGDMLQREAASTEI 932 Score = 259 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 157/375 (41%), Positives = 218/375 (58%), Gaps = 23/375 (6%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSV 56 M Y+YTE+KRIRK+FG R VL++PYLL +Q D++ F++ D GL+AAF + Sbjct: 1 MAYTYTERKRIRKNFGSRDSVLEIPYLLQMQKDAYTAFLQADVGPKKRTNEGLQAAFEAA 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT--- 113 FPI S++G E++Y+ Y L +P FDV+ECQ RG+TY++ +R K++L+IY+RE+ G Sbjct: 61 FPIVSHNGFVEMKYLEYNLAKPAFDVRECQTRGLTYASAVRAKVQLIIYDRESSTGQNKV 120 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 VK++KEQEVYMGE+PLMT G+F+INGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ Sbjct: 121 VKEVKEQEVYMGEVPLMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 ARIIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ E IL FF I Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFLDQGAYIS 240 Query: 234 ----------DNKLQMELVPERLRGETASFD--IEANGKVYVEKGRRITARHIRQLEKDD 281 + ++ + GE + D +++ +R R Sbjct: 241 QTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAK 300 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 + E V+ + I L+ N +D + L + + L N Sbjct: 301 MGR----SESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAENQY 356 Query: 342 DHGPYISETLRVDPT 356 G E + Sbjct: 357 RTGLARIEKAVKERL 371 >UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Tax=Bacteria RepID=RPOB_FRASC Length = 1141 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 377/820 (45%), Positives = 513/820 (62%), Gaps = 20/820 (2%) Query: 211 RALNYTTEQIL-DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 + + ++ + F EI+ + M P L +F I +V V + R Sbjct: 101 KDMTFSAPLFVTAEFTNNNTGEIKSQTVFMGDFP--LMTPKGTFVINGTERVVVSQLVRS 158 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 + + + I + ++ + + + + + L G Sbjct: 159 PGVYFERSLDKASDKDLYSCKVIPSRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALG 218 Query: 330 HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF 389 L P + TL D T + AL++IYR +RPGEPPTRE+A++L ENLF Sbjct: 219 WDEARIL--ERFGDFPSMRITLEKDHTAGQDDALLDIYRKLRPGEPPTRESAQTLLENLF 276 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG----KGEVDDI 445 F+ RYDL+ VGR K N+ L G+L+++DI+ ++ ++ + G + EVDDI Sbjct: 277 FNPKRYDLAKVGRYKVNKKLSLGVAHDVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDI 336 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEF 505 DH GNRRIR+VGE+ +NQ R+GL R+ER V+ER++ D++ + PQ +IN +P+ A++KEF Sbjct: 337 DHFGNRRIRTVGELIQNQVRLGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEF 396 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 FG+SQLSQFMDQ NPL+ +THKRR++ALGPGGL+RERAGFEVRDVHP+HYGR+CPIETPE Sbjct: 397 FGTSQLSQFMDQTNPLAGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPE 456 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 GPNIGLI SLS +A+ N +GF+ETPYRKV +G VT +I +L+A EE +V AQAN+ L Sbjct: 457 GPNIGLIGSLSTFARVNPFGFIETPYRKVENGRVTGQIDWLTADEEDRHVKAQANTPLRP 516 Query: 626 EGHFVEDLVTCRSK-GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 +G F ED V R K GE D+VDYMDVS +Q+VSV ++IPFLEHDDANRALMG+N Sbjct: 517 DGSFAEDRVLVRRKGGEVEFIPPDEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGSN 576 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 MQRQ+VP LR++ PLVGTGME A D+G V + GVV+ + A I + ++ Sbjct: 577 MQRQSVPLLRSEAPLVGTGMEARAAKDAGDVVVCAQAGVVEDLSADYITVMHDD------ 630 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 Y L K+ RSNQ TCINQ P V+ G+ V G V+ADGP TD GE+ALG+N+ VAF Sbjct: 631 -GTRRTYRLAKFRRSNQGTCINQKPIVNEGDRVGAGQVIADGPCTDNGEMALGKNLLVAF 689 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 MPW G+N+ED+I++S+R+VQ+D ++IHI+E +RDTKLGPEEIT DIPNV E L+ Sbjct: 690 MPWEGHNYEDAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVAEEVLAD 749 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 LDE GI+ IGAEV+ GD+LVGKVTPKGET+LTPEE+LLRAIFGEKA +V+D+SL+VP+G Sbjct: 750 LDERGIIRIGAEVSPGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE 809 Query: 925 SGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 SG VI V+VF+R DG E E+ + + Q +K + G I +L A Sbjct: 810 SGKVIGVRVFSREDGDELPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVIAKILPAED 869 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 + D P D L + N + L + Sbjct: 870 MPF-LEDGTPVDVVLN-PHGVPRRMNIGQILETHLGWVAK 907 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 108/375 (28%), Positives = 170/375 (45%), Gaps = 41/375 (10%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFI----------------EQDPEGQYGLEAAFRSVFP 58 F K + L+VP LL++Q SF I D GLE F+ + P Sbjct: 12 FAKIIEPLEVPDLLALQTQSFDWLIGSDAWAERVQEAIDSGRDDVPITSGLEEVFKEISP 71 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I+ +SG+ L + +R P + V+EC+ + +T+SAPL V +IK Sbjct: 72 IEDFSGSMSLSFRDHRFEPPKYSVEECKDKDMTFSAPLFVTAEFTNN-------NTGEIK 124 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 Q V+MG+ PLMT GTFVINGTERV+VSQL RSPGV+F+ K +S K LY+ ++IP Sbjct: 125 SQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERSLDK--ASDKDLYSCKVIP 182 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK-- 236 RG+WL+FE D +D + VRIDR+R+ T++L+AL + +IL+ F + I K Sbjct: 183 SRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALGWDEARILERFGDFPSMRITLEKDH 242 Query: 237 ------LQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 +++ + GE + + ++ R A+ R + L Sbjct: 243 TAGQDDALLDIYRKLRPGEPPTRESAQTLLENLFFNPKRYDLAKVGRYKVNKKLSLGVA- 301 Query: 289 VEYIAGKVVAKDYIDESTGELICAAN---MELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + G + D + + A E +D + + + L N + G Sbjct: 302 --HDVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDIDHFGNRRIRTVGELIQNQVRLGL 359 Query: 346 YISETLRVDPTNDRL 360 E + + + Sbjct: 360 ARMERVVRERMTTQD 374 >UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 Tax=Bacteria RepID=RPOB_BIFLD Length = 1187 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 371/1169 (31%), Positives = 548/1169 (46%), Gaps = 178/1169 (15%) Query: 207 TIILRALNYTTE-QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 + Y+ + F EI+ + M P L+ +F I +V V + Sbjct: 117 ECKEKDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFP--LQTPHGTFIIGGTERVIVSQ 174 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 R + + + + I + ++ + + + + + L Sbjct: 175 LVRSPGVYFDRQQDRTSDKEVFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFL 234 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 G + E P + + L + + ALV++YR +RP + PT EA ++L Sbjct: 235 MAIGMTKSEIAQA--FKDYPLVLDALEKETLGTQDEALVDLYRKIRPADTPTPEAGKNLL 292 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 ++ +F+ RYDL+ VGR K NR L E L ++DII +K L+ + +G Sbjct: 293 DSFYFNTKRYDLARVGRYKINRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGK 352 Query: 446 ---------------DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQ 490 DH GNRRIR VGE+ +NQ R GL R+ER V+ER++ D + + PQ Sbjct: 353 RNGEDVDLRVDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQ 412 Query: 491 DMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV 550 +IN +P++A +KEFFG+SQLSQFMDQNNPLS +T+KRR+SALGPGGL+R+RA EVRDV Sbjct: 413 SLINIRPVNATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDV 472 Query: 551 HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE 610 HP+H+GR+CPIE+PEGPNIGLI SL+ + + N +GF+ETPYRKV +G VTDE+ Y++A Sbjct: 473 HPSHFGRMCPIESPEGPNIGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADR 532 Query: 611 EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 + ++VIAQAN LDE G+FV+ R E + + VS+ + V Sbjct: 533 DLDHVIAQANQELDENGNFVQKSALARVGEE-------EAVDVPVSSVDYMDVSPR---- 581 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 V+ ++ +++ Sbjct: 582 --------------------------------------------QMVSLGASLIPFLEHD 597 Query: 731 RIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTD 790 + M L + R P V G D Sbjct: 598 EGHRALMGTNMQRQAV-----PLIESER----------PLVGTG---SEWRAANDSGDVI 639 Query: 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI 850 E ++ T + + ++ D G Sbjct: 640 KSE------------------------------KDGVVTYVSADLIRVMNDD---GTTSS 666 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 + ++ IV+ G V G ++ L + LL A Sbjct: 667 YKLAKFQRSNQTTCYNQRPIVHDGERVEAGSVM-ADGPAIQNGDLALGKNLLIAFMPWNG 725 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS--------- 961 + +D+ + ++ + +E+ + ++ ++ +DL Sbjct: 726 YNYEDAVIISQ-----RLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVAN 780 Query: 962 -EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 +E I+ G +LV + + P +R L ++ ++ + L + E Sbjct: 781 LDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGE 840 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 K + GD+L GV ++++VY+A R+I GDK++GRHGNKG IS+I Sbjct: 841 TGTVIGVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRIL 900 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 P EDMP+ +GTPVDI+LNPLGVPSRMN+GQ+LE HLG A Sbjct: 901 PEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAH------------------ 942 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 G D+ +L + + AE P+ATPVFDG K +K LL Sbjct: 943 ----------SGWDISLDPNLEAEWKKLIPSGAEKAEPNTPVATPVFDGVKPEVLKGLLS 992 Query: 1201 LGDLPTSG--------QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 G + L+DGRTGE + +P++VGYMYMLKL+HLVDDK+HARSTG YS Sbjct: 993 TTLPNRDGDRLVGPDGKATLFDGRTGEPYTKPISVGYMYMLKLHHLVDDKIHARSTGPYS 1052 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGN 1312 ++TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL EM+T KSDDV+GR ++Y IV G+ Sbjct: 1053 MITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGD 1112 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIELED 1341 + G+PESF VLLKE++SL +N+E+ + Sbjct: 1113 NLPPAGIPESFKVLLKEMQSLSLNVEVLN 1141 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 102/334 (30%), Positives = 148/334 (44%), Gaps = 38/334 (11%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI----------------EQDPEGQYGLE 50 K R +FG + +DVPYLL +Q DSF I GL+ Sbjct: 24 HKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNERWKARVEEDEKNGTNTVAHTSGLD 83 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAP 110 F + PI++++ L + EP VQEC+ + TYSAPL V + Sbjct: 84 EVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKEKDYTYSAPLYVNAEFENGD---- 139 Query: 111 EGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 +IK Q V+MG+ PL T +GTF+I GTERVIVSQL RSPGV+FD + +T S K Sbjct: 140 ---TGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGVYFDRQQDRT--SDKE 194 Query: 171 LYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF 230 ++ A+IIP RG+WL+FE D KD VR+DR+RK A + L A+ T +I F + + Sbjct: 195 VFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMTKSEIAQAFKDYPLV 254 Query: 231 EIRDNKL--------QMELVPERLRGETASFD--IEANGKVYVEKGRRITARHIRQLEKD 280 K ++L + +T + + Y R AR R Sbjct: 255 LDALEKETLGTQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTKRYDLARVGRYKINR 314 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + + + + +D I + Sbjct: 315 KLGVEADFNDRSLHQ---EDIIATIKYLVALHDG 345 >UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 Tax=Bacteria RepID=RPOB_MYCLB Length = 1178 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 391/883 (44%), Positives = 524/883 (59%), Gaps = 37/883 (4%) Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIL-RALNYTTE 218 D +VLY I + F V K P + + Y Sbjct: 79 DLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEV------KAPVEECKDKDMTYAAP 132 Query: 219 QIL-DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL 277 + F EI+ + M P + E +F I +V V + R + + Sbjct: 133 LFVTAEFINNNTGEIKSQTVFMGDFP--MMTEKGTFIINGTERVVVSQLVRSPGVYFDET 190 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 + V+ I + ++ + + + + + L G + Sbjct: 191 IDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQI-- 248 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 T + TL D T AL++IYR +RPGEPPT+E+A++L ENLFF E RYDL Sbjct: 249 TERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 308 Query: 398 SAVGRMKFNRSLLREEIE--GSGILSKDDIIDVMKKLIDIRNGKG------------EVD 443 + VGR K N+ L E S L+++D++ ++ L+ + G+ E D Sbjct: 309 ARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETD 368 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVK 503 DIDH GNRR+R+VGE+ +NQ RVG+ R+ER V+ER++ D++ + PQ +IN +P+ AA+K Sbjct: 369 DIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 428 Query: 504 EFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 EFFG+SQLSQFMDQNNPLS +THKRR+SALGPGGL+RERAG EVRDVHP+HYGR+CPIET Sbjct: 429 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 488 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 PEGPNIGLI SLSVYA+ N +GF+ETPYRKV DGVV+DEI YL+A EE +V+AQANS + Sbjct: 489 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVAQANSPI 548 Query: 624 DEEGHFVEDLVTCRSK-GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 DE G F+E V R K GE + +VDYMDVS +Q+VSV ++IPFLEHDDANRALMG Sbjct: 549 DEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG 608 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 ANMQRQAVP +R++ PLVGTGME A+D+G VA++ GV++ V A I + ++ Sbjct: 609 ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITVMADD---- 664 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 Y + K+ RSN TC NQ P V G+ VE G V+ADGP T+ GE+ALG+N+ V Sbjct: 665 ---GTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLV 721 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 A MPW G+N+ED+I++S R+V+ED T+IHI+E +RDTKLG EEIT DIPNV + L Sbjct: 722 AIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVL 781 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 + LDE GIV IGAEV GDILVGKVTPKGET+LTPEE+LLRAIFGEKA +V+D+SL+VP+ Sbjct: 782 ADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPH 841 Query: 923 GVSGTVIDVQVFT-RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA 981 G SG VI ++VF+ D E E+ + + Q +K + G I +L A Sbjct: 842 GESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPA 901 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE 1024 + D P D L + N + L + Sbjct: 902 EDMPF-LPDGTPVDIILN-THGVPRRMNVGQILETHLGWVAKS 942 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 98/297 (32%), Positives = 154/297 (51%), Gaps = 30/297 (10%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI-----------EQDPEGQYGLEAAFRS 55 R F K + L+VP LL +Q DSF+ I D + GLE Sbjct: 33 PGAPNRISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYE 92 Query: 56 VFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 + PI+ +SG+ L + R E V+EC+ + +TY+APL V + Sbjct: 93 LSPIEDFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINN-------NTG 145 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +IK Q V+MG+ P+MT+ GTF+INGTERV+VSQL RSPGV+FD K S+ K L++ + Sbjct: 146 EIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDK--STEKTLHSVK 203 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV------- 228 +IP RG+WL+F+ D +D + VRIDR+R+ P T++L+AL +T+EQI + F Sbjct: 204 VIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLE 263 Query: 229 -IFEIRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDV 282 + ++ +++ + GE + + ++ ++ R AR R + Sbjct: 264 KDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKL 320 >UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax=Bacteria RepID=RPOB_ROSS1 Length = 1229 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 394/1220 (32%), Positives = 566/1220 (46%), Gaps = 181/1220 (14%) Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV-IFEIRDNKLQMELVPERLRGETA 251 L R R + Y+ +++ + E++++++ + P L E Sbjct: 84 FLDYHFGEPRYNEHECRERGITYSAPIRVNVQLRILSTGELKESEIFLGDFP--LMTENG 141 Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 +F I +V V + R + ++ + + I + ++ + Sbjct: 142 TFVINGAERVVVSQLIRSPGVYFKEEKDPTSGRSLHSAKLIPSRGAWLEFETNKRDVISV 201 Query: 312 AANMELSLDLLAKLSQS-----------------------GHKRIETLFTN-DLDHGPYI 347 + + + + L + I LF + + YI Sbjct: 202 KVDRKRKIPVTILLRAVLGWRANPDGSGQWAPDNELDQRGRDEEILELFAHLETGDHQYI 261 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 TL DP AL+E+Y+ +RPG+PPT + A +L E L F+ RYDLS VGR K N+ Sbjct: 262 KATLDKDPARHAKEALLELYKRLRPGDPPTLDNARNLIEALLFNPRRYDLSRVGRYKLNK 321 Query: 408 SLLRE----------EIEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRS 455 +L + +L DDI +++++I + NG DDIDHLGNRR+R+ Sbjct: 322 NLWEKDTRPEVRRQAPDVKVRVLLPDDIFKIVERMIQLNNGTPGLRADDIDHLGNRRVRT 381 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 VGE+ + QFRVGL+R+ER +KER+SL D +T P ++N +P+ AA++EFFG +QLSQFM Sbjct: 382 VGELIQQQFRVGLLRMERVIKERMSLQDPETATPNALVNIRPVVAAMREFFGGAQLSQFM 441 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 DQ NPL+E+THKRR+SALGPGGL+R+RAGFEVRDVH +HYGR+CP+ETPEGPNIGLI ++ Sbjct: 442 DQTNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRICPVETPEGPNIGLIGTM 501 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 S YA+ NE GFLETPYRKV S + +G + D+ Sbjct: 502 STYARVNEMGFLETPYRKVYRE-------------------VPNASEWERQGLLLRDVRD 542 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV----- 690 R GE +VD V + ++ D ++ Q Sbjct: 543 LR-TGELIAVRGTRVDAAVARRIAVALLRGQILREDVVDPTTGEVIAHAGQEVNRALAER 601 Query: 691 ------------PTLRADKPLVGTGMERAVAVDSGVTAVAKR----GGVVQ-----YVDA 729 P + + + E + + + G V D Sbjct: 602 IVETPLKIIKIRPVVSQEVDYLSADEEDRFVIVQANAPLDEHNRFLEGTVSVRYAGDFDD 661 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 I D + + + N + P+ R D G Sbjct: 662 VPIERVDYMDVSPKQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLRPDAPIVGTGM 721 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 + + VA D +++S E+ + D G E Sbjct: 722 EYVAARDSGQVVVAKA--------DGVVLSATA-----------DEIVILEDD---GNER 759 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 + + +++ IV G V GDI + + +L + +L A + Sbjct: 760 SYRLRKFMRSNQDTCINQRPIVSRGQRVRKGDI-IADSSSTDNGELALGQNVLVAFMPWE 818 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS-------- 961 + +D+ L VS ++ +FT +EK + ++ ++ +D+ Sbjct: 819 GGNFEDAIL-----VSERLVREDIFTSIHIEKYEVEARDTKLGPEEITRDIPNVGQDSLR 873 Query: 962 --EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD 1019 ++ I+ G + +LV + D +R L ++ ++ + L Sbjct: 874 NLDDRGIIYIGAEVQPNDILVGKITPKGETDLTAEERLLRAIFGEKAREVKDSSLRVPNG 933 Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 + K+ + + +L GV + V V L KR+I GDKMAGRHGNKGV+S+I Sbjct: 934 VRGKVIDVKVFTRDDDV----ELPVGVNQRVDVLLCQKRKISAGDKMAGRHGNKGVVSRI 989 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 PIEDMP+ +GTPVDI+LNP+GVPSRMNI G + L Sbjct: 990 LPIEDMPFLPDGTPVDIILNPIGVPSRMNI---------------GQILETHLGWAA--- 1031 Query: 1140 KLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL 1199 R G +ATPVFDGA E EIKE L Sbjct: 1032 ------------------------------------ARLGYRVATPVFDGATETEIKEWL 1055 Query: 1200 KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1259 K DLP G+I LYDGRTGE F+RPVTVGY+YM+KL HLV+DK+HARSTG YSLVTQQPL Sbjct: 1056 KRADLPPDGKITLYDGRTGEAFDRPVTVGYIYMMKLAHLVEDKIHARSTGPYSLVTQQPL 1115 Query: 1260 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV GR K Y+ IV G E G+ Sbjct: 1116 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVVGRVKTYEAIVKGEPIQEAGV 1175 Query: 1320 PESFNVLLKEIRSLGINIEL 1339 PESF VL+KE++SLG+++E+ Sbjct: 1176 PESFKVLIKELQSLGLSVEV 1195 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 112/398 (28%), Positives = 186/398 (46%), Gaps = 60/398 (15%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NS 66 K R F + +++P L+ QL+SF+ F + GL F + PI ++G N Sbjct: 27 GKIERYSFARISNAIELPKLIETQLNSFEWF------RKEGLRELFEEISPITDFTGKNM 80 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 EL+++ Y GEP ++ EC+ RG+TYSAP+RV ++L I + ++KE E+++G+ Sbjct: 81 ELRFLDYHFGEPRYNEHECRERGITYSAPIRVNVQLRIL-------STGELKESEIFLGD 133 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 PLMT+NGTFVING ERV+VSQL RSPGV+F + K +SG+ L++A++IP RG+WL+F Sbjct: 134 FPLMTENGTFVINGAERVVVSQLIRSPGVYFKEE--KDPTSGRSLHSAKLIPSRGAWLEF 191 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRA-LNY--------------------TTEQILDLF- 224 E + +D + V++DR+RK+P TI+LRA L + E+IL+LF Sbjct: 192 ETNKRDVISVKVDRKRKIPVTILLRAVLGWRANPDGSGQWAPDNELDQRGRDEEILELFA 251 Query: 225 --------FEKVIFEIRD----NKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRIT 270 + K + + +EL G+ + D N + R Sbjct: 252 HLETGDHQYIKATLDKDPARHAKEALLELYKRLRPGDPPTLDNARNLIEALLFNPRRYDL 311 Query: 271 ARHIRQLEKDDV-------KLIEVPVEYIAGKVVAKDYIDESTGELICAANME-LSLDLL 322 +R R ++ ++ + ++ D + L D + Sbjct: 312 SRVGRYKLNKNLWEKDTRPEVRRQAPDVKVRVLLPDDIFKIVERMIQLNNGTPGLRADDI 371 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 L + + L G E + + + + Sbjct: 372 DHLGNRRVRTVGELIQQQFRVGLLRMERVIKERMSLQD 409 >UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Tax=Bacteria RepID=RPOB_DEHSB Length = 1273 Score = 734 bits (1895), Expect = 0.0, Method: Composition-based stats. Identities = 375/1230 (30%), Positives = 583/1230 (47%), Gaps = 158/1230 (12%) Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 G+ L+ EF + R+ R Y+ + + Sbjct: 62 GNRLELEFIGYEFREPRLSE-----YECTQRDQTYSVPLYVKARLIVKTTGEIKEPFDLF 116 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 L +F +V V + R + + I + + Sbjct: 117 FGDIPLMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPATGRPLCHTNLIPSRGAWLE 176 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETL-----FTNDLDHGPYISETLRVDP 355 + + + + + + L G+ + ++ YI ++ DP Sbjct: 177 FETSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDP 236 Query: 356 -TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 D +SAL++IY +RPG+PP + A L +FF YDL VGR K NR L Sbjct: 237 LIKDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELPSR 296 Query: 415 E--GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 E + L+++DI+ +++++I + NG+ DDIDHLGNRRIR+VGE+ +NQFR+GLVR+E Sbjct: 297 EVGENRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLE 356 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 R +ER+S+ +L+ + P ++N +P+ +AVKEFFG SQLSQFMDQ NPL+EIT+KRR+SA Sbjct: 357 RVARERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQFMDQTNPLAEITNKRRLSA 416 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 +GPGGL+RERAGF+VRDVH +HYGR+CPIETPEGPNIGLI SL+ Y++ N YGF+ETPYR Sbjct: 417 MGPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRINRYGFVETPYR 476 Query: 593 KVTDGVVTDE-----IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 KV + ++ + + I E V+A A S + E+ + S+ Sbjct: 477 KVYSKLKNNDKKLVGLKLKTEISEKGKVLAAAGSTISED--------------SFKIISK 522 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 + V + ++ D+ +R ++ R D + ER Sbjct: 523 LPECDISVMPFVSAE-----VKYMPADEEDRYIIAQANTRLDEKGYFLDDRIEARSAERY 577 Query: 708 VAVD---------SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 V S + ++ +++ + M Sbjct: 578 VVEPPDKIDYMDVSPKQIFSVAASLIPFLEHDDANRALMGANMQRQAVP----------- 626 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 + P V+ G + + G++ ++ VA S + Sbjct: 627 ----LLRAEAPMVATG--------MEREAARYSGQVIFAKHAGVA-----------SSVT 663 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 SE+++ T G + V + +++ I+ G ++ Sbjct: 664 SEKIIIR-----------------TAEGGHDEYLLKKFVRTNQGTCINQHAIINKGQKIA 706 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 G +L + +L + + A + + +D+ + +S ++ FT Sbjct: 707 AGQVL-ADSSATENGELALGQNCVVAFMSWQGFNYEDAII-----LSERLVREDAFTSIH 760 Query: 939 VEKDKRALEIEEMQLKQAKKDL----SEELQILEAGLFSRIR------AVLVAGGVEAEK 988 + K + ++ +++ +D+ E L+ L+ RI +LV + Sbjct: 761 ITKHELEARDTKLGVEEITRDIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGE 820 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + ++ L ++ ++ + L + E ++ ++ GDDL V K Sbjct: 821 TELSAEEKLLRAIFGEKAREVKDTSLRMPHGEWGKVINVRIFSR----DSGDDLPARVNK 876 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 V+V++A KR++ GDK+AGRHGNKGVIS I P+EDMPY +GTPVD+VLNP+GVPSRMN Sbjct: 877 WVQVWVAQKRKVSVGDKLAGRHGNKGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMN 936 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 +GQILETHLG A +G ++ + + + + + R++ K S E Sbjct: 937 LGQILETHLGWAGHLLGFRVATPVFDGADDTVIEDALARSWL-----SAKAGAIDMSPEN 991 Query: 1169 VMRLAENLRKGMPIATPVFDG-----------AKEAEIKELLKLGDLPTS---------- 1207 A+ + I FDG AKE +K LK + S Sbjct: 992 KRPSADAHKAIEWIKQQGFDGKKIFDEKHPGLAKEVSLKLWLKDMGVDASALSGAELEKK 1051 Query: 1208 ---------------GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 G+ L DGRTGE F++PVTVG MY+LKL HLV+DK+HAR+TG YS Sbjct: 1052 AYDVSSQSRLPSPIVGKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYS 1111 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGN 1312 L++QQPLGGKAQFGGQRFGEMEVWA+ AYG A+ LQEMLT+KSDD+ GR K Y++IV G Sbjct: 1112 LISQQPLGGKAQFGGQRFGEMEVWAMYAYGTAHNLQEMLTIKSDDIAGRAKAYESIVKGE 1171 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++PG+PESF VL+KE++SLG+ +E+ +E Sbjct: 1172 DVLQPGVPESFKVLVKELQSLGLAVEVINE 1201 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 105/366 (28%), Positives = 174/366 (47%), Gaps = 37/366 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN-SEL 68 IRK + + P+V++VP L+ +QL SF F E+ GL + PI+ + GN EL Sbjct: 14 VIRKSYAQLPEVVNVPNLIEMQLQSFVWFQEE------GLRELIEEISPIKDFVGNRLEL 67 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ-EVYMGEI 127 +++ Y EP EC R TYS PL VK RL++ T +IKE +++ G+I Sbjct: 68 EFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIV-------KTTGEIKEPFDLFFGDI 120 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT GTF+ +GTERV+VSQL RSPGV+F ++G+ L + +IP RG+WL+FE Sbjct: 121 PLMTALGTFITSGTERVVVSQLLRSPGVYFTISDDP--ATGRPLCHTNLIPSRGAWLEFE 178 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLF---------------FEKVIFE 231 +D + V+ID RRK+P + +LRA+ Y+ + IL+LF ++ Sbjct: 179 TSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLI 238 Query: 232 IRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + +++ G+ + D +++ + + R ++L Sbjct: 239 KDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELP--SR 296 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 E + + ++ I +I N + + D + L + + L N G E Sbjct: 297 EVGENRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLE 356 Query: 350 TLRVDP 355 + + Sbjct: 357 RVARER 362 >UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Tax=Mollicutes RepID=RPOB_AYWBP Length = 1273 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 375/1120 (33%), Positives = 574/1120 (51%), Gaps = 106/1120 (9%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 KK R+++ K +D+P L+ IQ SF F++ G++ + PI+SY+G+ + Sbjct: 10 KKAQRRNYSKTIYDVDLPNLIEIQNQSFDWFLKH------GIKELLQDFCPIESYNGDLK 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + Y L P + ++E +I+ ++Y A L VK L + K+ + + E+ Sbjct: 64 IHFDDYFLTPPKYSIEETKIKDISYVAQLFVKTTLEN-------VLTGETKQSNILLTEL 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT GTF+INGTERV+VSQ+ RS V+F + + +Y+ ++IP RG+W+++E Sbjct: 117 PLMTSTGTFIINGTERVVVSQIVRSASVYFAGNFD--IKLNRTIYSGQVIPSRGAWIEYE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQ----------ILDLFFEKVIFEIRDNKL 237 K+ L+ ++DR +K+P + + AL + +++ ILD F+K ++ + Sbjct: 175 EGSKEILYAKLDRSKKIPLSNFIYALGFDSKEAIENVFGKSAILDSVFDKET-DMDSDNA 233 Query: 238 QMELVPERLRGETASFDIEA--NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +EL + +GE D ++ + A+ R + ++ Sbjct: 234 LVELYSKIRQGEKVPVDTARDFIRTRLFDQKKYDLAKVGRYKFNKKLDVLTRAENT---- 289 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A D+++ E++ A + L+ + +A L Q+ H ++ +F + E + Sbjct: 290 YLACDFVNPENQEIMIAQDELLTKEKIAILKQNRHFLLQEIFDAKHNLENETDEEILAYK 349 Query: 356 TNDRLSALV-----------------------EIYRMMRPGEPPTREAAESLF------- 385 + + L +I +R E F Sbjct: 350 KYPQKNELFTKTNIINSRTGEVLVAKDTLVNDDIINHLRHNIHTLDEKVSKFFLGTKDIY 409 Query: 386 ------ENLFFSEDRYDLSAVGRMKFNRS---LLREEIEGSGILSKDDIIDVMKKLIDIR 436 + +F S K + ++ E ++ D+I + +++ Sbjct: 410 QKEADRQGVFNEILEVYTSKDESGKLYNKVKLIGNDQRETKKHITLSDVIASINYYLNLY 469 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM-PQDMINA 495 G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S + P D++N Sbjct: 470 ENVGTVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKNIKDMISTSKFGEVNGPGDLVNF 529 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 + + +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVRDVH +HY Sbjct: 530 TFLMSVIKTFFTNSRLSQFMDQINPLAELTQKRRVSALGIGGINRDRAGIEVRDVHNSHY 589 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT----DEIHYLSAIEE 611 GR+CPIETPEGP+IGLI SLS YA+ N+YGF++TP+ KV +I YL+A +E Sbjct: 590 GRLCPIETPEGPSIGLITSLSTYAKVNKYGFIQTPFFKVLQQDGKTTLSRDIDYLTADQE 649 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 +IA A LD F + + RS GE+ +F R+Q+ Y DVS +Q+VSV S IPFL Sbjct: 650 KEEIIASAGFVLDANNSFQDKKIIARSNGETGIFERNQITYADVSPKQIVSVATSSIPFL 709 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EH+DA+RALMGANMQRQAVP L + P+VGTG+E A DSG +A+ G V YVDA + Sbjct: 710 EHNDASRALMGANMQRQAVPLLIPESPIVGTGVEYRAAKDSGCLIIARESGFVTYVDAQK 769 Query: 732 IVIKVNEDEMYPGEAGI-------------------------DIYNLTKYTRSNQNTCIN 766 I+I ++ Y L + +SNQ+T + Sbjct: 770 IIITKKPNQTVSLNGKTLYDTTQEFTYTQAKVLYENNHKEYQAEYTLINFAKSNQDTLVL 829 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P V LGE + GD+L GPST GELALG+N+ VAFM W GYN+ED+I++SE +V+ D Sbjct: 830 QKPIVVLGEHINEGDILVSGPSTSQGELALGRNVTVAFMTWEGYNYEDAIIMSEELVKHD 889 Query: 827 RFTTIHIQELACVSRDTK--LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 +T+IHI + +R+ K G EEIT ++PNVG A+ LDE GI+ G+EV GDILV Sbjct: 890 VYTSIHIDKYEVQTRELKKGSGQEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDILV 949 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK- 943 GK+TP+G + +P EKL++ + GEKA + KDSSLRVP G G V V F+R + Sbjct: 950 GKITPQGNIEPSPSEKLIQIVIGEKAREYKDSSLRVPFGEGGIVQSVHYFSRKNGDVLPA 1009 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 E + + + +K + G I +L + D P D L L Sbjct: 1010 GVNENIRVFIAKKRKINEGDKMAGRHGNKGVISRILPKEDLPY-MADGTPIDIMLN-PLG 1067 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + N + L + K+ DL Sbjct: 1068 VPSRMNIGQILEIHLGMAAKKLGIKVATPVFDGVNDYDLK 1107 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 189/641 (29%), Positives = 289/641 (45%), Gaps = 97/641 (15%) Query: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 S V+ + +++ + + M I + P V Sbjct: 694 SPKQIVSVATSSIPFLEHNDASRALMGANMQRQAVP---------------LLIPESPIV 738 Query: 772 SLGEPVERGD---VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 G L + Q + + P N + ++ + + + Sbjct: 739 GTGVEYRAAKDSGCLIIARESGFVTYVDAQKIIITKKP----NQT--VSLNGKTLYDTTQ 792 Query: 829 TTIHIQE---LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 + Q ++ + I N L K IV +G + GDILV Sbjct: 793 EFTYTQAKVLYENNHKEYQAEYTLINFAKSNQDTLVLQK----PIVVLGEHINEGDILVS 848 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV-----IDVQVFTRDGVE 940 + +L + A + + +D+ + V V ID ++ Sbjct: 849 -GPSTSQGELALGRNVTVAFMTWEGYNYEDAIIMSEELVKHDVYTSIHIDKYEVQTRELK 907 Query: 941 KDKRALEIEEMQLKQAKKDLS--EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 K EI + +E I+ G + +LV ++ P ++ + Sbjct: 908 KGSGQEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDILVGKITPQGNIEPSPSEKLI 967 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 ++ + ++ ++ + L + E +++ GD L GV + ++V++A KR Sbjct: 968 QIVIGEKAREYKDSSLRVPFGEGGIVQSVHYFSRK----NGDVLPAGVNENIRVFIAKKR 1023 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 +I GDKMAGRHGNKGVIS+I P ED+PY +GTP+DI+LNPLGVPSRMN Sbjct: 1024 KINEGDKMAGRHGNKGVISRILPKEDLPYMADGTPIDIMLNPLGVPSRMN---------- 1073 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 IG + L + + Sbjct: 1074 -----IGQILEIHLGMAAK---------------------------------------KL 1089 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 G+ +ATPVFDG + ++KE++K +L G++ LYDGRTGE ++ ++VG MYM+KL+H+ Sbjct: 1090 GIKVATPVFDGVNDYDLKEIMKEANLEPDGKMVLYDGRTGEPYDSRISVGVMYMVKLSHM 1149 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 VDDK+HAR+ G Y+LVTQQP+GGK Q GGQRFGEMEVWAL AYGAA+TLQE+LTVKSDD+ Sbjct: 1150 VDDKLHARNVGPYTLVTQQPMGGKVQNGGQRFGEMEVWALYAYGAAHTLQEILTVKSDDI 1209 Query: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GR K Y IV G +P +PESF V +KE++SLG+ +EL Sbjct: 1210 VGRNKTYSAIVQGTQLPKPSIPESFRVFIKELQSLGLYVEL 1250 >UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax=Thermotogaceae RepID=RPOB_PETMO Length = 1187 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 390/1106 (35%), Positives = 588/1106 (53%), Gaps = 112/1106 (10%) Query: 1 MVYSYTE-KKRIRKDFGKRPQVLDVP-YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 M E +R RK FGK P+ ++ L+ IQ DSF+ F+++ + + + P Sbjct: 1 MNTVVREVGRRERKFFGKVPEKTEIYEDLVKIQKDSFRDFLDKK------IMESIKRYMP 54 Query: 59 IQ-------SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 I+ + + +V + + F EC+ +G+TY+ +K+R+ Sbjct: 55 IKIPVKASGKKNKEFLIDFVDVKFEDSSFSENECRDKGLTYAGKAYLKVRIT------DS 108 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 T + I++ ++++ IP MT+ G F++NG ERVIV+QL RSPGV+F ++ + K + Sbjct: 109 ATGEMIEKDDIFLCNIPYMTERGIFIVNGAERVIVNQLVRSPGVYFIKEEETD--TSKEM 166 Query: 172 YNARIIPYRGSWLDFEFD---PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV 228 + A +P +G+WL+ ++ K+ L VRIDR+RK + LRAL Y + + F K Sbjct: 167 FIAHFLPIKGAWLEILYNPNPGKEVLQVRIDRKRKFNFFLFLRALGYENDLDILRLFPKE 226 Query: 229 IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 I + VE + L ++ ++ P Sbjct: 227 IDLDDE----------------------------VELSNYNNCTVLSDLSFQELDDMDPP 258 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 + G + ++L L + K + + Sbjct: 259 RKSTYGMKL---------------------YEVLELLKKYEIKSVTVAHLVAEITLEKMK 297 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 + + L A EI+ ++P E P + A+ E+++F+ +++D S +GR K Sbjct: 298 KRYEKEERLTSLEAYKEIFSKLKPTEIPRAQKAKEEIEDMYFNPEKFDFSQIGRQKIQVK 357 Query: 409 L----------------------LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 L + + + K DII + L+ ++ +D D Sbjct: 358 LRKAYIDYLREVEKKDISEDMEDKIKYPIKTFAVDKLDIILSARYLLHVKENIEGLDTRD 417 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-LGDLDTLMPQDMINAKPISAAVKEF 505 HLGN+R+RSVGE+ + +F ++ + E+L+ + ++ + PQ +IN++ I A +F Sbjct: 418 HLGNKRVRSVGELMQIEFERAFSKMIQHAPEKLAGVQSINKISPQSLINSRSIMTAFHQF 477 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 F SSQLSQF+DQ NPL+E+THKRR+SA+GPGGL RE A FEVRDVH +HYGR+CPIETPE Sbjct: 478 FASSQLSQFLDQVNPLAELTHKRRLSAIGPGGLKREHAKFEVRDVHHSHYGRMCPIETPE 537 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV-TDEIHYLSAIEEGNYVIAQANSNLD 624 G NIGLI S+++ A+ +EYGFL+TPY +V V + I YLSA EE Y IA A++ + Sbjct: 538 GANIGLITSMAILAKVDEYGFLKTPYYRVKHAKVDLNNIVYLSADEEELYRIAPASAEIG 597 Query: 625 EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 E+G VE+ + R G+ SLF +D+++Y+ V+ +Q+ SV A+LIPFLEHDDANRALMG+N Sbjct: 598 EDGSLVEEYIEARYLGKVSLFHKDEIEYISVTPKQIASVSAALIPFLEHDDANRALMGSN 657 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE---- 740 MQRQAVP LR P VGTG+E A DSG +AK G+V YVD +IVI ++E Sbjct: 658 MQRQAVPLLRPQAPFVGTGVEWLAARDSGYLIMAKHKGIVDYVDGRKIVITRLDEENNVL 717 Query: 741 -MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 E D Y L KY RSNQ+ CINQ+P V++G+ V +G +ADGPS D+GELALG+N Sbjct: 718 KDSNDEPLKDEYTLLKYVRSNQDMCINQVPIVNVGDVVTKGQAIADGPSMDMGELALGRN 777 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + + F+PW GYNFED+I+VS+ +++ D FT+IHI+ + DT+LGPEEITADIPNV + Sbjct: 778 IFIGFLPWEGYNFEDAIVVSQELLENDAFTSIHIEVFETKAMDTQLGPEEITADIPNVKK 837 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 L LDE GIV IG+ V+ GDILVGKVTP+GE+ TPEEKL++++FG+K D+KDSSL Sbjct: 838 ELLRNLDEEGIVKIGSYVSSGDILVGKVTPRGESDTTPEEKLIKSVFGDKGRDIKDSSLT 897 Query: 920 VPNGVSGTVIDVQVFTRDGV-EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 VP+G+ G VIDVQ+F R + + + ++ + K + G I + Sbjct: 898 VPHGIEGRVIDVQIFDRKDIPSLEIGVNKYVKVFIATKKTLQVGDKLAGRHGNKGVISTI 957 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 L + D P L L + N + L L Sbjct: 958 LNKEDMPF-LPDGTPLQMLL-SPLGVPSRMNIGQVLELHLGWLSMLTNDYYATPIFDGAT 1015 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGD 1064 ++ + K + + + GD Sbjct: 1016 ESEIMDELSK-----VREEHELYLGD 1036 >UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax=Cyanidioschyzon merolae RepID=RPOB_CYAME Length = 1036 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 344/1208 (28%), Positives = 526/1208 (43%), Gaps = 201/1208 (16%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 + + ++ S + I L+ + + Sbjct: 1 MRDLIAVQRNSYYTFLTK---SLKEEFDKISPIVDYTGQLELHLITSKM---ELKPPKIT 54 Query: 205 PATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 P + + Y+ + + ++R + +P L E A+F I +V V Sbjct: 55 PVQAKRQDITYSVGMYMPVQLWNHQTGDVRQQMIYFGEIP--LMTEDATFIINGAERVVV 112 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 + R + + L ++A + Y + L + + L+ Sbjct: 113 NQIVRSPGVYFQALWDKQHVR-TFEATFMANRGAWIKYELDKQKLLWVRLDKNRKMPLVI 171 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 L G E L + + N+ +ALVE Y+ MRPGEP T +A+ Sbjct: 172 FLQALGLNLQEI--KPHLTNREVFERSWENHAVNNTEAALVEFYKKMRPGEPATVHSAKQ 229 Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVD 443 L FF +YDLS VGR K N+ L + IL+ D++ + LI + + VD Sbjct: 230 LLYARFFDPKKYDLSEVGRYKLNQKLHLDIPLSVHILTTSDLLAGLDYLIQLCLDRARVD 289 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVK 503 DIDHL NRR++ VGE+ +NQ R+GL R+E+ ++E++++G + L P ++N KP+++A++ Sbjct: 290 DIDHLANRRLKCVGELLQNQVRIGLSRLEKLLREKMTIG--EKLQPSSLLNPKPLTSAIR 347 Query: 504 EFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 EFF SSQLSQFMDQ NPL+E+THKRRISALG GGLTRERAGF VRD+HP+HYGR+CPIET Sbjct: 348 EFFASSQLSQFMDQINPLAELTHKRRISALGAGGLTRERAGFAVRDIHPSHYGRICPIET 407 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 PEGPN GLI SL+++A+ N YGF+ETPY V G V I YL+A + Sbjct: 408 PEGPNAGLIGSLAIFARVNRYGFIETPYYPVKKGQVQKSIVYLTAD-------------V 454 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 ++ V +G+ + + Sbjct: 455 EDNYRLAPADVKYDREGQI-------------------------CSPIVAVRYRQEWTTC 489 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 + S + ++ ++ +++ + M Sbjct: 490 DASHVDY------------------MAISPIQFISAATCLIPFLEHDDANRALMGSNMQR 531 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE--PVERGDVLADGPSTDLGELALGQNMR 801 P VS G+ + +G Sbjct: 532 QAVP---------------LIRASKPYVSTGQEKWMVQG--------------------- 555 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 + S+ + ++ + + + N Sbjct: 556 ---------------VFSKA---DGIVRSVQATSIRIQHARGPVDYALLKYQKSNQDT-- 595 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 +D +V++G V G L+ + +L + +L A + + +D+ + Sbjct: 596 --CIDYRPLVWVGEHVVKGQ-LIAQSAAMDSGELALGQNVLIAYMPWEGYNFEDAFV--- 649 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGL 971 +S ++ V+T +EK + ++ +Q + + +E I+ G Sbjct: 650 --ISERLVYEDVYTSIHIEKYETDARQTKLGAEQITRQIPNVGEHALRQLDEHGIISVGS 707 Query: 972 FSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 + ++LV + D+ P + L ++ + + L ++ + Sbjct: 708 WVEAGSILVGKITPKGESDQPPEGKLLRAIFGEKNQHVKDSSLRMPNGSRGRVIHVRILS 767 Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 + QGD+L GV V+V +AVKR IQ GDKMAGRHGNKG++++I P DMPY +G Sbjct: 768 R----DQGDELPAGVNISVRVSVAVKRVIQVGDKMAGRHGNKGIVARILPRCDMPYLPDG 823 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 TPVD++LNPLGVPSRMN+GQ+ E LG+AA + +I Sbjct: 824 TPVDVILNPLGVPSRMNVGQLFEALLGLAAHRLRKRIKI--------------------- 862 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 +P A + + LK L Q Sbjct: 863 ----------------------------VPFDEMYHKEASRIFVHQQLKRAALSA--QTI 892 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 LYDGR+GE+F+ VTVG YMLKL HLVD+K+HARSTG YSLVTQQPLGG+AQ GGQR G Sbjct: 893 LYDGRSGEKFDNAVTVGMAYMLKLVHLVDEKIHARSTGPYSLVTQQPLGGRAQHGGQRLG 952 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EMEVWALEAYGAAYTLQE+LT+KSDD+ GRT IV G PESF VL++E++ Sbjct: 953 EMEVWALEAYGAAYTLQELLTLKSDDMEGRTATLNAIVKAQPIPRGGTPESFKVLMRELQ 1012 Query: 1332 SLGINIEL 1339 +LG+++ + Sbjct: 1013 ALGLDVTV 1020 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 157/382 (41%), Gaps = 40/382 (10%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81 + L+++Q +S+ F+ + L+ F + PI Y+G EL + L P Sbjct: 1 MRDLIAVQRNSYYTFLTKS------LKEEFDKISPIVDYTGQLELHLITSKMELKPPKIT 54 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 + + + +TYS + + ++L ++ D+++Q +Y GEIPLMT++ TF+ING Sbjct: 55 PVQAKRQDITYSVGMYMPVQLWNHQ-------TGDVRQQMIYFGEIPLMTEDATFIINGA 107 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERV+V+Q+ RSPGV+F + K H + A + RG+W+ +E D + L+VR+D+ Sbjct: 108 ERVVVNQIVRSPGVYFQALWDKQHV---RTFEATFMANRGAWIKYELDKQKLLWVRLDKN 164 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK--------LQMELVPERLRGETASF 253 RK+P I L+AL ++I + +FE +E + GE A+ Sbjct: 165 RKMPLVIFLQALGLNLQEIKPHLTNREVFERSWENHAVNNTEAALVEFYKKMRPGEPATV 224 Query: 254 DIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + + + R + ++ ++ + LI Sbjct: 225 HSAKQLLYARFFDPKKYDLSEVGRYKLNQKL----HLDIPLSVHILTTSDLLAGLDYLIQ 280 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 +D + L+ K + L N + G E L + I ++ Sbjct: 281 LCLDRARVDDIDHLANRRLKCVGELLQNQVRIGLSRLEKLLREKMT--------IGEKLQ 332 Query: 372 PGEPPTREAAESLFENLFFSED 393 P + S F S Sbjct: 333 PSSLLNPKPLTSAIREFFASSQ 354 >UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Phytoplasma RepID=RPOB_PHYAS Length = 1240 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 369/1102 (33%), Positives = 570/1102 (51%), Gaps = 87/1102 (7%) Query: 1 MVY--SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 M Y KK R+++ K +D+P L+ IQ SF F++ G+E + P Sbjct: 1 MAYRNVKYGKKVERRNYSKIIYDVDLPNLIEIQNKSFNWFLKD------GIEELLQDFCP 54 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I+SY+G+ ++ + P + V+E + + +Y L VK L + K Sbjct: 55 IESYNGDLKIYFGECYSTGPKYSVEESKTKDASYVIQLFVKATLENT-------LTGETK 107 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 + V + E+PL+TD GTF+ING ERV VSQ+ RS V K LY+ ++IP Sbjct: 108 KSSVLLTELPLITDTGTFIINGKERVAVSQIVRSSSV--YYSSTFDVKLNKNLYSGQVIP 165 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF-------- 230 RG+W+++E K+ L+V++DR +K+P + + AL + +I++ F K Sbjct: 166 ARGAWIEYEEGSKEILYVKLDRSKKIPLSNFIYALGFNNREIIEKVFGKSPLLNSSFVKE 225 Query: 231 -EIRDNKLQMELVPERLRGETASFDIEA--NGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 ++ +EL + +GE D K ++ + R + ++ Sbjct: 226 EDMDTGNALIELYSKIRQGEKVPVDTARDFIRKRLFDQKKYDLTTVGRYKFNKKLDVLAR 285 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 + + D+++ T E+I + L+ D + L ++ H ++ LF + Sbjct: 286 AEKT----YLVHDFVNLETKEIILPKHTFLTKDKIEILRKNRHFLLQELFDAQHNLENET 341 Query: 348 SETLRVDPTNDRLSAL-----------------------VEIYRMMRPGEPPTREAAESL 384 E + + + L E+ + +R Sbjct: 342 DEEILTYKKDPQSRELYIKTNILNFRTGEIIFPKDTLVTDEVIKRLRKSIQLLDGKVIEF 401 Query: 385 FENLFFSEDRY----------------DLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 F + + + + E ++ DII Sbjct: 402 FLRSKDVYQKDLERTGVFNEILEVYLSKDEHDNLQHKVQIVGNNQKETKKHITLSDIIAS 461 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM 488 + +++ G G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S+ + Sbjct: 462 ISYYLNLYEGIGNVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKHIKDMISVSKFSEVG 521 Query: 489 PQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 P +++N ++ +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVR Sbjct: 522 PGELVNFGFLNGVIKTFFANSRLSQFMDQINPLAELTQKRRVSALGVGGINRDRAGVEVR 581 Query: 549 DVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD----GVVTDEIH 604 DVH +HYGR+CPIETPEGP+IGLI SL++YA+ ++YGF++TP+ KV V+++I Sbjct: 582 DVHNSHYGRLCPIETPEGPSIGLIASLAIYAKVDDYGFIQTPFFKVFVQNGASYVSNQIE 641 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 YL+A +E +IA + L+ + F +D V R GE ++ ++QV Y D+S +Q+VS+ Sbjct: 642 YLTADQEKEEIIASSGYELNSDATFQKDKVIARKNGEIGIYPKEQVTYADISPKQIVSIA 701 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 + IPFLEH+D++RALMG+NMQRQAVP L + P+VGTG+E A DSG +A + G+V Sbjct: 702 TASIPFLEHNDSSRALMGSNMQRQAVPLLVTESPIVGTGIEYRAAKDSGSLIIASQPGIV 761 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 YVDA +IV E Y LT + +SNQ+T I Q P VSLG+ +++GD+L Sbjct: 762 TYVDAKKIVT-------SDQEGNKKEYQLTTFEKSNQDTLILQKPIVSLGDNIQKGDILV 814 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 DGPST+ GELALG+N+ VAFM W GYN+ED+I++SE +V+ D +T++HI + + +R+ K Sbjct: 815 DGPSTNQGELALGRNILVAFMTWEGYNYEDAIIISEELVKNDVYTSVHINKYSVQTRELK 874 Query: 845 LGP--EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 G EEIT ++PNVG A+ LDE GI+ G+EV GDILVGK+TP+G TP+EKL+ Sbjct: 875 KGSGKEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDILVGKITPQGNVDPTPQEKLI 934 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLS 961 + + GEKA + KDSSLRVP G G V VQ F+R +G E + + + +K Sbjct: 935 QIVIGEKAREYKDSSLRVPYGEGGIVQSVQYFSRKNGDILPPGVNENIRVFIAKKRKISE 994 Query: 962 EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL 1021 + G I +L + D D L L + N + L Sbjct: 995 GDKMAGRHGNKGVISRILPKEDLPF-MEDGTTIDVMLN-PLGVPSRMNIGQILEIHLGMS 1052 Query: 1022 KHEFEKKLEAKRRKITQGDDLA 1043 K+ DL Sbjct: 1053 AKNLNIKVATPVFDGVNDQDLK 1074 >UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax=Thermotogaceae RepID=RPOB_THEP1 Length = 1263 Score = 702 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 392/1137 (34%), Positives = 593/1137 (52%), Gaps = 101/1137 (8%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI--- 59 + +R R FGK + L +P L+ IQ S+++F+E+ GL + PI Sbjct: 2 KEISCGRRTRVSFGKTQEPLPIPDLVEIQKISYRRFLEE------GLLEVLKKFSPIYSQ 55 Query: 60 ------QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 + L++VS R+GEPV D EC+ +G+TYS P+ RL + Sbjct: 56 ATRSDLKKSDRGFALEFVSTRIGEPVVDPLECKAKGLTYSVPIYATARLTDMK------- 108 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 ++KE+EV++G IP MTD GTF+ING ERV+V+Q+ SPG++F S+ + Y Sbjct: 109 SGEMKEEEVFLGYIPYMTDRGTFIINGAERVVVNQIVVSPGLYFSSEYI-----DREEYG 163 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 +P RG+WL+ DP D + +K+ + L+ + Y ++ + + + Sbjct: 164 GYFLPSRGAWLEVILDPYDGVLYAGLDGKKVNLFLFLKTIGYEKDEDILSLYPTYLDADD 223 Query: 234 DNKLQMELVPERLRG------------ETASFDIEANGKVYVEKGR-RITARHIRQLEKD 280 ++ L + + L + + D+ + + + +I + + Sbjct: 224 EDSLLLHVGSILLEDIYDGDRKIAEKWDILTKDLAERILMIDDINQIKIVHPIAQNTFEK 283 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGEL---ICAANMELSLDLLAKLSQSG-------- 329 ++L+ E + + + L + L +++ + Sbjct: 284 MLELVSSSGEEGEEEEEKTKIYGLNEVTVVDAYLEIFRRLRPEELPRINAAKRYLHDLFF 343 Query: 330 ------HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM----MRPGEPPTRE 379 + N+ YI + V+ D A ++Y ++P + Sbjct: 344 NPERYDLSEVGRYKVNERLRNAYIRYLIEVEG-EDPEEARKKVYNENSLVLKPLDIVLAS 402 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFN-----------------RSLLREEIEGSGILSK 422 + + D S R R L+ G+ S Sbjct: 403 RILFDYFERRYVNDFEIDSYELRNLIRIFKEEYLEKRKTASYDLRKLVSVFRRNYGVTSD 462 Query: 423 DDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 ++ ++ + +I D DHLGN+R+R+VGE+ + +F R ++A++ERL+ Sbjct: 463 LSVLAAIRYISNINKELPSIPFDTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLT 522 Query: 481 -LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 + L + Q +IN K I + V +FF +QLSQFMDQ NPLSE+THKRR+SA+GPGGL Sbjct: 523 LINSLSKVSIQSLINIKSIISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLR 582 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RE FE R+VH + YGR+CPIETPEG NIG I SL++Y + +EYGFL TPYRKV +G V Sbjct: 583 RESKVFEARNVHYSQYGRLCPIETPEGANIGFITSLAIYTKIDEYGFLMTPYRKVVNGKV 642 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 TDE+ YL A EE ++ I A + +DEEG+ + + V R + L R++VD+MDVST+Q Sbjct: 643 TDEVVYLRANEEEDFKIVPATTPVDEEGNIIPERVVARVGEDIRLVPREEVDFMDVSTKQ 702 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 SV ASLIPFLEHDDA+RALMG+NMQRQAVP L+A+ P VGTGME A +SG +A+ Sbjct: 703 PFSVSASLIPFLEHDDASRALMGSNMQRQAVPLLKAEAPFVGTGMEWEAAKNSGYVTLAE 762 Query: 720 RGGVVQYVDASRIVIKVNEDE---MYPGEAG--IDIYNLTKYTRSNQNTCINQMPCVSLG 774 G+V+ VDA+RIV+ ++ MY + +D Y L K+ RSNQ+T INQ P V+ G Sbjct: 763 HDGIVKEVDAARIVVHRTDENGNLMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEG 822 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + V++GD +ADGP+TD+GELALG+N+ VAFMPW GYN+ED+ILVS+ +++ED FT+IHI+ Sbjct: 823 DFVKKGDPIADGPATDMGELALGRNILVAFMPWEGYNYEDAILVSQELLEEDVFTSIHIE 882 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD------ILVGKVT 888 +R+T+LGPEEITADIPNV + L LDE+GI+ +GA V ILVGKVT Sbjct: 883 VYETQARETRLGPEEITADIPNVSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVT 942 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV-EKDKRALE 947 PKGE TPEEK++R++FGE+ DVKD+SLR+P+GV G VI V V+ ++ + E L+ Sbjct: 943 PKGEGDTTPEEKIIRSVFGERGRDVKDTSLRLPHGVEGRVIRVDVYDQNDIAELGAGVLK 1002 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + + K + G + +L + D P L L + Sbjct: 1003 LVRVYVASRKTLDIGDKLAGRHGNKGVVSNILPKEDMPF-LPDGTPVQMVLN-PLGIPSR 1060 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 N + L L K + + D++ + + KR + GD Sbjct: 1061 MNVGQILETHLGWLAKLTGKWFATPVFEGAKEDEILRPLYEE-----RKKRGLHLGD 1112 >UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Tax=Embryophyta RepID=RPOB_GNEPA Length = 1108 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 353/1183 (29%), Positives = 546/1183 (46%), Gaps = 152/1183 (12%) Query: 177 IPYRGSWLDFEFDPK-DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 I ++F FD + I + + + L ++++ + FF + Sbjct: 41 IANTQKEVEFLFDKNYKIIEPSIKEKD-----AVYQRLTFSSKLFVPAFFIYWNKIKKKK 95 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 + + +P L +F I N +V V + R + K + + G Sbjct: 96 IIYLGEIP--LMNNNGTFLINGNYRVVVNQLIRSPGIYYSLERKRTGNIYTSTLISDCGG 153 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE--TLFTNDLDHGPYISETLRV 353 + + + + + +S+ + + I T + + I Sbjct: 154 RLKFEIDIKQNIWIRISRKKNVSILVFFFAMGLDIEEILKNTYYIKGFEGWGLICNEKLK 213 Query: 354 DPTNDRLSAL----VEIYRMMRPGEPPTREAAESLFENLF--FSEDRYDLSAVGRMKFNR 407 + + A+ E+ + E+ F F R L +GR N+ Sbjct: 214 HKLSRKKGAIFTFYEELGSRGDNNDFVFSESLSESLYKKFTNFLSKRCKLGRIGRRNLNK 273 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 L E + L D++ ++ LI + G G VD+IDHL NRR SV ++ + + + Sbjct: 274 KLNLEIPDNEIFLLPQDVLAIIDYLIKVSYGVGTVDNIDHLQNRRFFSVADLLKKEVGLA 333 Query: 468 LVRVERAVKERL-------SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP 520 L RV+ +++ + + ++P+ + + I+ +K FFG LSQF++Q N Sbjct: 334 LNRVKVLIQKTMQTIEMLRKKQNKRIMLPEIPLVSTQITKTLKHFFGLHPLSQFLEQTNS 393 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L+EI H R++S LGPGGLT A F RD+HP++YGR CPI TPEG N GLI SL++ A+ Sbjct: 394 LAEILHARKVSFLGPGGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAISAR 453 Query: 581 TNEYGFLETPYRKVTDG-VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV-TCRS 638 N +GFLE+P+ V +I YLS E+ Y IA N L + E + Sbjct: 454 IN-FGFLESPFYNVAKKYQKAKKIVYLSPSEDVYYRIALGN-CLSVDQKIPEKKNTPTQY 511 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 E + +Q+ + Q S+G SLIPFLEH+DA RALMG+NMQRQAVP+++ +K Sbjct: 512 HQEFLSIAWEQIHFRCFLPLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEKC 571 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 +VGTG+E VA+DSG A++ + G +QY DA+ IV + + L Y R Sbjct: 572 IVGTGLEGQVALDSGALAISTQEGRIQYSDAATIVSVL--------KGNTTQTELQIYQR 623 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 SN NT ++Q S + V +G +LADG + GE+ LG+N+ VA+MPW GYNFED+IL+ Sbjct: 624 SNSNTLMHQKTHASQAKYVRKGQILADGAAMLGGEICLGKNILVAYMPWQGYNFEDAILI 683 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 SE ++ +D FT+ HI E++T +IP + +L LD++G+V +G+ V Sbjct: 684 SECLIYKDIFTSFHITRYETTI--CTAECEKMTREIPRLATYSLRHLDKNGLVRVGSWVQ 741 Query: 879 GGDILVGKVTPKGETQLT--PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 GD+LVGK+ P+ + PE +LL+ +F +K++ LR G VIDV Sbjct: 742 PGDVLVGKLRPRSSEDFSRFPELRLLQDLFCTSP--IKETCLRAN--GKGRVIDVNWSKL 797 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 K +E D D Sbjct: 798 QAFCK----------------------------------------DDLEKGHQDDDTEDI 817 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 + E E+ ++ QL E ++RKI GD +A V + + Sbjct: 818 YDEA----EDALEKVYQLNNYNLSSDSEKVHVYLLEKRKIQVGDKVAGRHGNKGIVSIVL 873 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R +DMP+ ++G +D+VLNPL VPSRMN+GQI E Sbjct: 874 SR------------------------QDMPFLQSGISLDMVLNPLSVPSRMNVGQIFECL 909 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 LG+A + ++ + + A + Sbjct: 910 LGLAG-TMNKHYRIPPFDERYEQEASRKLVFYELYKASEQTANP---------------- 952 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + +L G+ +++DGRTGE FE+PVT G Y+LKL Sbjct: 953 -----------------------WIFELEHLGKTQIFDGRTGEIFEQPVTTGNAYILKLI 989 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H V+DKMHARSTG+Y+ +TQQP+ GK++ GGQR GEMEVWALE++G AY L+EMLTVK+D Sbjct: 990 HQVNDKMHARSTGNYARITQQPVQGKSKGGGQRLGEMEVWALESFGVAYVLREMLTVKAD 1049 Query: 1297 DVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINIE 1338 + R K+ ++I+DG+ + ESF VL KE+ SL + + Sbjct: 1050 HIRARKKILRSILDGHSVPKADSATESFRVLSKELNSLALELN 1092 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 85/408 (20%), Positives = 160/408 (39%), Gaps = 36/408 (8%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY-VSY 73 F ++ ++ +P IQL+ F +FIE D L F I + E + +Y Sbjct: 3 FDEKKEMFTIPEFGQIQLEGFCRFIEYD------LLDKFVKFPKIANTQKEVEFLFDKNY 56 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 ++ EP ++ + +T+S+ L V + + + + + Y+GEIPLM +N Sbjct: 57 KIIEPSIKEKDAVYQRLTFSSKLFVPAFFIYWNKIKKKKII--------YLGEIPLMNNN 108 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GTF+ING RV+V+QL RSPG+++ ++ +T +Y + +I G L FE D K N Sbjct: 109 GTFLINGNYRVVVNQLIRSPGIYYSLERKRT----GNIYTSTLISDCGGRLKFEIDIKQN 164 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE----IRDNKLQMELVPERLRGE 249 +++RI R++ + + A+ E+IL + FE I + KL+ +L ++ Sbjct: 165 IWIRISRKKNVSILVFFFAMGLDIEEILKNTYYIKGFEGWGLICNEKLKHKLSRKKGAIF 224 Query: 250 TASFDIEANGK----VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 T ++ + G V+ E + KL + + K + + D Sbjct: 225 TFYEELGSRGDNNDFVFSESLSESLYKKFTNFLSKRCKLGRIGRRNL-NKKLNLEIPD-- 281 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 E+ L++ G ++ + +++ L+ + V Sbjct: 282 -NEIFLLPQDVLAIIDYLIKVSYGVGTVDNIDHLQNRRFFSVADLLKKEVGLALNRVKVL 340 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 I + M T E + +S Sbjct: 341 IQKTM-----QTIEMLRKKQNKRIMLPEIPLVSTQITKTLKHFFGLHP 383 >UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Carsonella ruddii RepID=RPOB_CARRP Length = 1267 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 393/1342 (29%), Positives = 680/1342 (50%), Gaps = 90/1342 (6%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY 62 + +++KK K ++PYLL Q+ S+ F+ + ++ + FP+ Sbjct: 10 FCFSKKKFFHK--------CNLPYLLHNQIGSYNSFLSSKYNSLFSIKKVLKQYFPLICN 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 + N ++ L EP + +IR + + L + + + + + +++ Sbjct: 62 NKNIFIKLKKIELLEPCNTEKYTKIRNLHLFSTLYMYISIYVINKNLN-------VYKKI 114 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 ++G IP MT G F+ING +R+++SQ +S G++F ++K K IIP +GS Sbjct: 115 FLGNIPSMTKKGNFIINGIDRILISQFTKSYGIYFYTEKKKKK--------CIIIPLKGS 166 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 WL+F + D++ + L L + + Sbjct: 167 WLEFIITNNFLIVF--DKKINFEINVFLICLG------------YNKKYFFNFFFFKIKI 212 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 + F + + K K I + ++ I GK+ K+Y Sbjct: 213 KIIRGKKRIFFLLNKK----------------KYFYKIYNKYICISIKKILGKLFGKNYF 256 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + L + ++ + + +F + + Y+ + Sbjct: 257 LKKNTFL---KFNIIDINKVNLILNYPIYFFFIIFLKKIINLNYLIYIYKNFKLKINKEL 313 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L + F F + +Y S +G + + L + Sbjct: 314 LQYKKGYIIN------------FFRNLFYKKKYFYSLIGAKRIFKRLFLK-----KNNKL 356 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 ++++KK++ + D+ D+L N+ I + G++ +F +V + + +++ Sbjct: 357 TIYLEIIKKILKFIKFNIQNDNFDNLENKLILNCGKLLSIKFDFLFKKVIKFINYKMNNF 416 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 ++N+ I+ +K++F +++LSQF+DQNNPL+EI+H R+IS + G+ +E Sbjct: 417 K-KYKDLDFIVNSDIITIGLKDYFCNNELSQFLDQNNPLAEISHNRKISLISGIGIEKEN 475 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 GF++RD+H +HY +VCPI+TPEG NIGLINSL+ ++ N+Y F+ T Y+ G + Sbjct: 476 CGFDIRDIHYSHYCKVCPIDTPEGHNIGLINSLAYLSKVNKYNFISTIYKISILGKILGI 535 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGH-FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 + ++ +++ ++ G F R +D +++ Q++ Sbjct: 536 TFLDNKFDKHKFIVNFNSTIETIYGEIFRSPYFEARKTNYYYYKKFLNIDLIEICGDQII 595 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 SVGASLIPFL H+DANR LMG+NMQRQAVP + ++ P+VGTG E + ++S ++ Sbjct: 596 SVGASLIPFLSHNDANRCLMGSNMQRQAVPLIDSENPIVGTGNELEIGLNSNYNILSDLN 655 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G V Y D +I+IK N I Y L KYTR+NQNT +NQ V G+ V+ G+ Sbjct: 656 GYVLYSDNYKIIIKNNNF--------IKTYFLEKYTRTNQNTILNQYTKVLKGDFVKVGN 707 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 ++AD ST GE++LG+N+RVAFM W GYNFEDSIL+S ++ ++ F +IHI E V + Sbjct: 708 IIADSNSTKNGEISLGKNLRVAFMSWYGYNFEDSILLSSSILNKNNFNSIHIYEFITVLK 767 Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 + G E ++ + E +K+ ++GI+ IG V D++VGK+ PK + + +PEEKL Sbjct: 768 YNENGFEIVSNECFGSNEKIKNKV-KNGIIKIGEFVFSKDVIVGKMIPKKKRKFSPEEKL 826 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS 961 + +F E + + L VP + GT+I V F + K+K ++ QL K+++ Sbjct: 827 FKIVFSESNFNYYEQPLTVPKNIKGTIIAVNDF-KIFYFKNKIFKLLKFEQLNYTCKNIN 885 Query: 962 EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT----DEEKQNQLEQLAEQ 1017 ++I+ +L + +K + + +++ +L Sbjct: 886 NFFYETFNYYLTKIKKLLFNNKITIKKKRINSYNININNIFKIKCFNKKINFKLNIFKNI 945 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + + K+ + DD +++I+K+ +AVK++I GDKM+GRHGNKGV+S Sbjct: 946 ISNELLKKKNIFVYKKINFIKHDDFENSIIRIIKIKIAVKKQIAIGDKMSGRHGNKGVVS 1005 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 I E+MPYD+ G +D++LNPLGVPSRMN+GQ+LE L + + +K + Sbjct: 1006 NIIDYENMPYDKFGNKIDLILNPLGVPSRMNVGQLLEVFLA-GSLNLIKSFFLKIKNLNK 1064 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 ++ + + + ++L+ F++ V+++ +N++ + + F ++ Sbjct: 1065 ISYFKMKLFIKIIFKCIYDKNINLNIFNNSLVLKIFKNIKNQLNVCVHNFYNFNVNKVNN 1124 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 ++K + + ++ L+DG TG+++ + V VGY+Y +KLNHLV DK+++RS G YS+VTQQ Sbjct: 1125 IIKTIGINKNCELLLFDGITGKRYLQLVNVGYIYFMKLNHLVIDKIYSRSIGPYSIVTQQ 1184 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGK+ GGQR GEMEVWALEAYGAA+ L+EMLT+KSDD+ GR ++YKNI+ G + Sbjct: 1185 PLGGKSNLGGQRLGEMEVWALEAYGAAFLLKEMLTIKSDDILGRIELYKNIIKGINDANS 1244 Query: 1318 GMPESFNVLLKEIRSLGINIEL 1339 G+PESF VL+KEI+SL +I++ Sbjct: 1245 GIPESFQVLMKEIQSLCFDIKI 1266 >UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax=Deinococcus RepID=RPOB_DEIGD Length = 1152 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 365/1189 (30%), Positives = 546/1189 (45%), Gaps = 164/1189 (13%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDL-FFEKVIFEIRDNKLQMELVPERLRGET 250 D L R+ P + L Y L K I+++++ + +P L + Sbjct: 75 DFLEYRLGEPPYTPEECREKDLTYQAPLYAKLQLIHKDSGLIKEDQVFLGDLP--LMTDD 132 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 SF I +V + + R + K K+ + + + E G ++ Sbjct: 133 GSFVINGADRVVISQIHRSPGVYFTSSYKGIKKMYTAAIIPMPKRGPW--IELEFNGGVL 190 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + + L G+ L + P + AL+ ++ ++ Sbjct: 191 EMKVNKRKFPVSLLLRVLGY-DDAQLKALFTEFDPAAELPEDKSAGMNPDEALLRLFTVL 249 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD------ 424 RPG+PP R+ A L RYDL GR K N L + +L+ +D Sbjct: 250 RPGDPPKRDKAIQYLYGLLADPKRYDLGEPGRFKMNTKLGTR-RQDRTLLTFEDGRFGDA 308 Query: 425 -IIDVMKKLIDIRNGK-----------------GEVDDIDHLGNRRIRSVGEMAENQFRV 466 ++D ++ L+ ++ G DDIDHLGNRR+R+VGE+ +Q RV Sbjct: 309 GLVDTIRYLMALQQGLETVTMGADEDGVAIEVPVTEDDIDHLGNRRVRTVGELLADQLRV 368 Query: 467 GLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITH 526 G+ R+ R V+ER+ LG+ D P ++N +PI AA++EFFG SQLSQF DQ NPLS++ H Sbjct: 369 GMGRMARGVRERMLLGNPDAATPTKLVNNRPIVAAMREFFGRSQLSQFKDQTNPLSDLRH 428 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 KRRISALGPGGLTRERAGF+VRDVH THYGR+CPIETPEG NIGLI+SLS YA+ N+ GF Sbjct: 429 KRRISALGPGGLTRERAGFDVRDVHRTHYGRICPIETPEGANIGLISSLSSYAKVNDLGF 488 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 +E PYR+V +G +D+V ++ Sbjct: 489 IEAPYRRVV------------------------------DGRVTDDVVYM-----TADIE 513 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 V S A V + P++ E Sbjct: 514 DRYVIAQANSPLNPDGTFAEER---------------------VLARKKGDPMLYAPTEV 552 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 S V+ ++ +++ + M Sbjct: 553 DFMDVSPKQIVSINTSLIPFLEHDDANRALMGSNMQSQAV-------------------- 592 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLG-ELALGQNMRVAFMPW-NGY-NFEDSILVSERVV 823 P V AD P+ G E + + + + G + D+ + + Sbjct: 593 --PLV-----------RADSPAVGTGVEERVVTDSGTSVISDVTGRVTYVDARAIQVTLT 639 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 ++ + G + + LD+ IV +G EV G + Sbjct: 640 EDAPQIGLV------------KGNVRTFELVRFTRSNQGTNLDQHPIVSVGDEVVPGQV- 686 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 + + +L + + AI + +D+ +S ++ +T +EKD+ Sbjct: 687 IADGPASDQGRLALGQNITIAIMPFDGFNFEDA-----ICISEGLVRKDFYTSVHIEKDE 741 Query: 944 RALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 ++ ++ +D+ +E I+ G + +LV + + P Sbjct: 742 IEARDTKLGPEKITRDIPGLSEAALRDLDEDGIVRVGAEVKPGDILVGKTSFKGESEPTP 801 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 +R L ++ ++ + L Q + + + R+ +G DL PGV ++V+VY Sbjct: 802 EERLLRSIFGEKAREVKDTSLRVQSGQGGIVVKT---VRFRRGDEGVDLKPGVREMVRVY 858 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 +A KR++Q GDK+A RHGNKGV+SKI P EDMPY E+GTPVD+V NPLGVPSRMN+GQIL Sbjct: 859 VAQKRQLQVGDKVANRHGNKGVVSKILPPEDMPYLEDGTPVDLVFNPLGVPSRMNLGQIL 918 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 ETHLG A+ G K + ++E ++ A ++++ D D+ + Sbjct: 919 ETHLGEVARLTGQKFVTPVFDSATEEAIKEMLEVAAAER--LQRRKDEGFELDKREQEVL 976 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 + K I+ P D A L +G+ LYDGRTGE PV VG MY++ Sbjct: 977 DRAGKLGVISPPNGDYAAAQ--------MQLARTGKSVLYDGRTGEPISGPVVVGTMYVM 1028 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 KL H+V+DK+HARSTG YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAA+TLQEMLT+ Sbjct: 1029 KLYHMVEDKLHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTI 1088 Query: 1294 KSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 KSDD++GR Y++IV G +PESF VL+KE+ SLG+++E+ D Sbjct: 1089 KSDDIDGRDAAYQSIVKGEEVSGSTIPESFKVLVKELHSLGLDVEVLDN 1137 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 90/254 (35%), Positives = 141/254 (55%), Gaps = 25/254 (9%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV 56 M + + + R FG+ +V+ +P L +Q++SF+ F++ D GL++AFR V Sbjct: 1 MSLTDQKPRIER--FGEITEVIPLPNLTEVQVNSFKAFLQADKAPDERDDTGLQSAFREV 58 Query: 57 FPIQSYSGN----SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 FPI L ++ YRLGEP + +EC+ + +TY APL KL+L+ + Sbjct: 59 FPIDETEKGRSTGLVLDFLEYRLGEPPYTPEECREKDLTYQAPLYAKLQLIHKD------ 112 Query: 113 TVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 IKE +V++G++PLMTD+G+FVING +RV++SQ+HRSPGV+F S K +Y Sbjct: 113 -SGLIKEDQVFLGDLPLMTDDGSFVINGADRVVISQIHRSPGVYFTSSYKGI----KKMY 167 Query: 173 NARIIPY--RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF 230 A IIP RG W++ EF L ++++ +RK P +++LR L Y Q+ LF E Sbjct: 168 TAAIIPMPKRGPWIELEF-NGGVLEMKVN-KRKFPVSLLLRVLGYDDAQLKALFTEFDPA 225 Query: 231 EIRDNKLQMELVPE 244 + P+ Sbjct: 226 AELPEDKSAGMNPD 239 >UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Tax=Bacteria RepID=RPOB_MYCPN Length = 1391 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 365/1460 (25%), Positives = 592/1460 (40%), Gaps = 242/1460 (16%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 R+ +GK P L IQ+ S+Q F++ D LE + FPI+S + Sbjct: 12 YSPTATRRYYGKIATDFVQPNLADIQIRSYQTFLDHD------LENLIAAYFPIKSPNDR 65 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLV------IYEREAPEGTVKDIKE 119 + + R P + + + TY + L L+ I + + Sbjct: 66 YTINFKGLRRTAPERNEAQSRSESKTYEIGIYADLELIDSATGTIKKPRKSKKNSATSSV 125 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF-DSDKGKTHSSGKVL---YNAR 175 V++ +PL+T +G F++NG E+ +++Q+ RSPG++ + K SS K + Y Sbjct: 126 DGVFLTNLPLITRDGVFIVNGIEKFVIAQITRSPGIYMLTKSQLKLSSSRKRVQEGYVCE 185 Query: 176 IIPYRGSWLDFEFDPKDNL---FVRIDRR-------RKLPATIILRALNYTTEQILDLFF 225 ++P GS + K + FV+I R + P T +L+A + ++IL +F Sbjct: 186 VLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGMSGKEILKVFK 245 Query: 226 EKVIFEIRDNKLQME----------LVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 + LR + ++ R Sbjct: 246 NNEFITRSLEAEVYNAKDFLNNVDPEIKNLLREFRDGKTDLRRKGIASDQKIRSLVSDYV 305 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI-- 333 LEK+ L E + D + + A + +L L + Sbjct: 306 LLEKEHKALSEAKPNDPKVGQLEADMDELMDKIITERAAKHIVHELSISLRGLENTDECP 365 Query: 334 -----ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM--------------MRPGE 374 L + Y + +L IY+ ++ G Sbjct: 366 ENSYHALLCSRFFRQRRYNLSAAGRYKVSRKLRITERIYQKTLACDLHLKNGELLLKKGT 425 Query: 375 PPTREAAESLFENLFFS--------------------EDRYDLSAVGRMKFNRSLLREEI 414 +E + + + + + ++ N + Sbjct: 426 LLVKEEIDKIKQAAQNNQIDFVQKIKLTTDGSAVNLSPESLLYESLDVYVNNDNFDVSVP 485 Query: 415 --------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + + ++ D I + +I+I + G+ DDIDHLGN+R++ + E+ ++ Sbjct: 486 VVGIHNDNDLNKAITLSDFIASISYVINIPSAIGKYDDIDHLGNKRVKLINELISSRLES 545 Query: 467 GLVRVERAVKERLSLGDL-------------------DTLMPQDMINAKPISAAVKEFFG 507 G+ R+ER +KE+L++ D L + +IN+KPI +++FF Sbjct: 546 GITRMERFLKEKLTIADGVNRGQQINEEGQVIEQAEKKELTIKSLINSKPIQIVIRDFFN 605 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 + QL+QF+D NPLSE+++KRRISA+GPGG++RE ++RDVH + YGR+CPIETPEG Sbjct: 606 THQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIETPEGM 665 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG 627 NIGLI SL+ +A+ +E GFL PYRK+ N + +E Sbjct: 666 NIGLIMSLASFAKIDENGFLMAPYRKIK------------------------NGVITDE- 700 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 VE L R V+ + + + +MQ Sbjct: 701 --VEYLTALREDEHIIAEISSLVNIDENNKILDKEIIGRYR---------------SMQG 743 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 P+ + + V+ ++ +++ + M Sbjct: 744 LYDPSKIDYIDV------------APHQVVSIGSSLIPFLENDDSARALMGTNMQRQA-- 789 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 Y L K P V G + + D T +A Sbjct: 790 ---YPLIK----------PYAPVVGTG---QEYKIARDSGLT-----------MLAPCS- 821 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 T ++ G + I + + Sbjct: 822 --------------------GTVKYVDNSKITIESDS-GEQHTLDLIKFERSNQNTCYNH 860 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 +V G VT D ++ +++L+ + +L A + +D+ + V Sbjct: 861 VPLVEKGQRVTK-DEVIADGPAVNKSELSLGQNVLVAFTTWNGYNYEDAIVISERLVKDD 919 Query: 928 V-----IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 V I+ V + + + + A K +E I+ G + VLV Sbjct: 920 VLTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDENGIIMVGAEVKEGDVLVGK 979 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 +++ P ++ + + + + L + KR I G++L Sbjct: 980 VSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLKLPHGGDGIVS----CVKRFSIANGNEL 1035 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 GV++++KVY+ KR+IQ GDK+AGRHGNKGVISK+ P+ DMP+ E+GTPVDI+LNPLG Sbjct: 1036 NDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPVADMPHLEDGTPVDILLNPLG 1095 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV---RQKV 1159 VPSRMNIGQI E HLG AA + ++ + A+ D K Sbjct: 1096 VPSRMNIGQIFEMHLGYAAHNLAKRMLISACFDDKKAQALSTEINQPQYKLDRLITGLKA 1155 Query: 1160 DLSTFSDEEVMRLAENLRKG-----------------MPIATPVFDGAKEAEIKELLKLG 1202 ++ ++ L G +ATP+F G ++++++ Sbjct: 1156 QITNRGLKDEQAALAQLNNGDIALVLKEIGMSFDDLHFKVATPIFQGVNFQDLQDIMDEA 1215 Query: 1203 DLPT---SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1259 L G+ +L DGRTG FE+P+++G MY++KLNH+VDDK+HAR+ G YS +TQQPL Sbjct: 1216 GLKPAETHGKFKLIDGRTGLPFEKPISLGIMYIMKLNHMVDDKIHARAVGPYSKITQQPL 1275 Query: 1260 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 GGK+Q GGQRFGEMEVWALEAYGAAY LQE+LT+KSDDV GR K Y IV G EPG+ Sbjct: 1276 GGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNKAYAAIVKGAAFPEPGI 1335 Query: 1320 PESFNVLLKEIRSLGINIEL 1339 PESF +L KE++ L +++ Sbjct: 1336 PESFKLLTKELQGLALSVSF 1355 >UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax=Nephroselmis olivacea RepID=RPOB_NEPOL Length = 1109 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 311/1172 (26%), Positives = 513/1172 (43%), Gaps = 174/1172 (14%) Query: 200 RRRKLPA-TIILRALNYTTEQILDLFFEKVIF---EIRDNKLQMELVPERLRGETASFDI 255 +R K+ + +A +Y+ +++ + E + + M +P L F I Sbjct: 63 KRPKVSIQEAVYQATSYSAALYVNVETNQSNLGTQETQIQSVWMGDIP--LMTSRGHFII 120 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + +V V + R + +++ + + I+ + + G + + Sbjct: 121 NGSSRVVVNQIVRSPGIYFKEMIDQKHRRM-FQASIISNRGSWVRLETDVDGMIWVRMDK 179 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHG--PYISETLRVDPTNDRL---------SALV 364 + +L L G + + + + L D++ AL Sbjct: 180 AKKISILIVLEAMGLSKKTIFRSLKSPEFLFKALQQLLAKKRWQDKVYELIPQSTTDALF 239 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 +Y + P +P A + RYD+ VGR+K N+ L E L D Sbjct: 240 HLYTKLSPDKPGNTLTARRVLYEKLMDAKRYDVGLVGRVKLNKKLKLPVPEHVHTLRPVD 299 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL 484 + LI + G+G+VDDIDHL NRR+R GE+ ++Q R+GL R+ER ++ R+S Sbjct: 300 FLAATDYLIGLEYGRGQVDDIDHLKNRRVRCAGELIQSQLRIGLNRLERTMQGRISRP-G 358 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 + ++N KP+ AA++EFFGS+ LSQFMDQ NPL+E+THKRR+S+LGPGGL+++RAG Sbjct: 359 ELPGMSSLMNPKPVMAALREFFGSNPLSQFMDQTNPLAELTHKRRLSSLGPGGLSQDRAG 418 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI- 603 VR++HP+ YGR+CPIETPEGPN GLI S++ YA+ N+YG LE P+ +V +G V E Sbjct: 419 MAVREIHPSQYGRICPIETPEGPNAGLIGSMATYARLNQYGGLECPFYQVVEGKVLYEFG 478 Query: 604 -HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 +L+A +E + + ++ + V+ + Sbjct: 479 PIFLTAEQEDQVTVVAGD--------ILDQRKLM----------------VAVAEGRDPL 514 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV--DSGVTAVAKR 720 A + D P + + TG R V + ++ Sbjct: 515 DPA--VRPTLPDR---------------PLILRSRQEFHTGSFRDVNYVGIAPTQMISVA 557 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 ++ +++ + M P + P+ Sbjct: 558 TSLIPFLEHDDANRALMGSNMQRQAV----------------------PLLKTEAPIIGT 595 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 + A + G + V ++ D+ + + + + Sbjct: 596 GLEAQVAADAGGVVQSPFEGIVVYV--------DATRIVVSTSKSKLALSKKRKIHESNV 647 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + + + I+ + V GD+L + G Q+ + Sbjct: 648 FLQVYQ-----------RSNQGTCIHQRPIIPLHTPVIRGDLLADGSSTSG-GQIALGKN 695 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 LL A + + +D+ L +S +I ++T +E+ + + ++ ++ K + Sbjct: 696 LLVAYMPWEGYNFEDAIL-----ISERLIYDDLYTSLHIERYEVETQHTKLGPEEITKSI 750 Query: 961 S------------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 +E I+ G + VL+ E+ + P R + K Sbjct: 751 VHETDDKLPYRWLDERGIVMRGAWVEPGDVLIGKITPKEEKELTPELRLVYAIFGKRPKG 810 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + L + ++ K+V VY+ +R+IQ GDKMAG Sbjct: 811 FRDTSLRVPQGVRGRVVDVRMIRDEDT------------KVVHVYVCQQRQIQVGDKMAG 858 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHGNKG++S+I P +DMPY ++GTPVD+VLNPLGVPSRMN+GQ+ E LG+A + +G ++ Sbjct: 859 RHGNKGIVSRIVPRQDMPYLQDGTPVDMVLNPLGVPSRMNVGQVFECLLGLAGQRLGQQL 918 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 + GA+ + + + + Sbjct: 919 KVRAFDEMY--------------GAEASRHLVYNKLHEAS-------------------- 944 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 E+ L D G+ RL DGRTG+ F++ VT+G YMLKL H VDDK+HAR+T Sbjct: 945 -----EVTGHHWLFDPNHPGKSRLIDGRTGDMFDQAVTIGQAYMLKLIHQVDDKIHARAT 999 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNI 1308 G YSL+TQQPLGG+++ GGQR GEMEVWA E +GAAYTLQE+LTVKSDD+ GR ++ + Sbjct: 1000 GPYSLITQQPLGGRSKRGGQRLGEMEVWAFEGFGAAYTLQELLTVKSDDMQGRNEIMSAM 1059 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 V G E G PESF V+++E+++L ++I + Sbjct: 1060 VQGRQLPEMGTPESFKVMIRELQALCLDIGIY 1091 Score = 172 bits (436), Expect = 7e-41, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 109/225 (48%), Gaps = 16/225 (7%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + RKD P +P L+SIQ DSF F+E+ GL V P+ Sbjct: 3 QNLQRKDSQWTP--FILPDLISIQRDSFLLFLER------GLATELSHVTPLTGSHFRIT 54 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L YRL P +QE + +YSA L V + E ++ + Q V+MG+I Sbjct: 55 LCSHGYRLKRPKVSIQEAVYQATSYSAALYVNV-----ETNQSNLGTQETQIQSVWMGDI 109 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT G F+ING+ RV+V+Q+ RSPG++F + H + ++ A II RGSW+ E Sbjct: 110 PLMTSRGHFIINGSSRVVVNQIVRSPGIYFKEMIDQKH---RRMFQASIISNRGSWVRLE 166 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 D ++VR+D+ +K+ I+L A+ + + I Sbjct: 167 TDVDGMIWVRMDKAKKISILIVLEAMGLSKKTIFRSLKSPEFLFK 211 >UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacteria RepID=A7BQQ8_9GAMM Length = 1118 Score = 665 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 480/723 (66%), Positives = 577/723 (79%), Gaps = 18/723 (2%) Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 +R+D T L A +EIYRMMRPGEPPT EAAESLF NLFFSE+RYDLSAVGRMKFNR + Sbjct: 1 MRIDSTTTTLEAQIEIYRMMRPGEPPTPEAAESLFNNLFFSEERYDLSAVGRMKFNRRIG 60 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 R+EI G GIL+ DDI+DV++ LI+I NG G VDDIDHLGNRRIRSVGEM ENQFR+GLVR Sbjct: 61 RDEITGPGILTVDDILDVLRTLINIPNGIGGVDDIDHLGNRRIRSVGEMTENQFRIGLVR 120 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 VERAVKERLS+ +++ ++PQ++INAKP+SA+++EFFGSSQLSQFMDQNNPLSE+THKRRI Sbjct: 121 VERAVKERLSVAEIENVVPQELINAKPVSASIREFFGSSQLSQFMDQNNPLSEVTHKRRI 180 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL+VYA+TN+YGFLETP Sbjct: 181 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETP 240 Query: 591 YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 R+V DG VTD++ YLSAIEEG +VIAQAN+NLDE G+F +D+V R + E ++ S+D+V Sbjct: 241 CRRVEDGRVTDKVEYLSAIEEGGFVIAQANANLDENGYFKDDMVAARHENEFTVISKDKV 300 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +YMDVS +Q+VSV ASLIPFLEHDDANRALMG+NMQRQAVPTLRA KPLVGTGMER VA+ Sbjct: 301 NYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAQKPLVGTGMERIVAI 360 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG--------------EAGIDIYNLTKY 756 DSGVT VA+RGG++ VDA+RIV+++N+DE+ +G+DIYNLTKY Sbjct: 361 DSGVTVVAERGGIIDSVDAARIVVRINDDEVLKEGEDNSITPKFGTLLSSGVDIYNLTKY 420 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RSNQNTCINQ P V + ++RGDVLADGPSTDLGELALGQN+ VAFMPWNGYNFEDSI Sbjct: 421 VRSNQNTCINQKPLVKPDDLIKRGDVLADGPSTDLGELALGQNLFVAFMPWNGYNFEDSI 480 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 L+SERVV+E+RFT+IHI EL+C++RDTKLG EEITADIPNV E+AL LDE+GI+ IGA+ Sbjct: 481 LISERVVEEERFTSIHIVELSCLARDTKLGAEEITADIPNVSESALKNLDEAGIISIGAQ 540 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLRVP+G GTVIDVQVFTR Sbjct: 541 VMPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGTMGTVIDVQVFTR 600 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 DGV+K RA IE+ +L + KKDL + L+ILE ++ R+ +LV V + Sbjct: 601 DGVDKGARAGRIEQAELNRVKKDLQDTLRILEHDVYLRVEKLLVGNKVTNSSNGWEGWEG 660 Query: 997 WLELGLTDEEKQ-NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 +L + ++ ++ E E + + + + I + L K K L Sbjct: 661 VKKLLVGNKVTNSSKDEDGIETNTIITSRSD---DIETNTIITSEILGEPSDKWFKFSLE 717 Query: 1056 VKR 1058 K+ Sbjct: 718 DKK 720 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 247/487 (50%), Positives = 310/487 (63%), Gaps = 22/487 (4%) Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 + D+ + ++T G K V + G + + + Sbjct: 629 RILEHDVYLRVEKLLVGNKVTNSSNGWEGWEGVKKLLVGNKVTNSSKDEDGIETNTIITS 688 Query: 936 RDGVEKDKRALEIEEM-QLKQAKKDLSEELQILE------------AGLFSRIRAV---- 978 R + + E + + S E + + L Sbjct: 689 RSDDIETNTIITSEILGEPSDKWFKFSLEDKKSQAQLESFAALKALHDLHQVEEDEKSQA 748 Query: 979 -LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 L + + L LPR + EL + DE+ Q Q+E A+Q + + + E KR+K+ Sbjct: 749 QLESFKPALKALHDLPRTKLFELRVEDEKIQAQIESFAQQLKDQRQRADALYEEKRQKLI 808 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 GD+LAPGVLK+VKVYLA+KR IQPGDKMAGRHGNKGV+S I P+EDMPY ++G PVD+V Sbjct: 809 SGDELAPGVLKMVKVYLAIKRTIQPGDKMAGRHGNKGVVSMIVPVEDMPYTKDGRPVDLV 868 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLG----A 1153 LNPLGVPSRMNIGQ+LETHLG AAK +G++I LK + + + I+ Sbjct: 869 LNPLGVPSRMNIGQVLETHLGWAAKALGEQIEQKLKIINKSKIIAQSIEELRSYLTKIYN 928 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + DL+ ++ E++ LA+NL G+P+AT VFDGA E+EIK +L+L LPT+GQ LY Sbjct: 929 VSGKPEDLTVLNNAEILELAKNLSDGVPMATQVFDGASESEIKMMLELAGLPTNGQTTLY 988 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGRTGE F R +TVGYMYMLKLNHLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEM Sbjct: 989 DGRTGEAFSRQITVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEM 1048 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEAYGA+YTLQEMLTVKSDDVNGRT+MYKNIVDG+H+ME GMPESFNVL+KEIRSL Sbjct: 1049 EVWALEAYGASYTLQEMLTVKSDDVNGRTQMYKNIVDGDHRMEAGMPESFNVLVKEIRSL 1108 Query: 1334 GINIELE 1340 GI+IELE Sbjct: 1109 GIDIELE 1115 >UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Tax=Mycoplasma RepID=RPOB_MYCH2 Length = 1220 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 378/1372 (27%), Positives = 575/1372 (41%), Gaps = 238/1372 (17%) Query: 1 MVYSYTEKK----RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV 56 M + Y K R+ +G + L+ P L +SF F+ G+ AF + Sbjct: 1 MNHIYKLKSYGIGTDRRFYGVANKTLETPDFLDPVRESFDWFLH------VGIPEAFDRI 54 Query: 57 FPIQSYSGNSELQY--VSYRLGEPV---FDVQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 FPI S +G E+ + S R+ +P ++E +I+G TYSA + V L V E Sbjct: 55 FPIVSANGKLEISFRRGSLRVEKPENEYLAIREAKIKGKTYSARVYVTLVKVHSED---- 110 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 +++EQE+ + E P MT GTF+ING E+V+VSQL RSPGV F + + + Sbjct: 111 ---GEMEEQEILLAEFPFMTQGGTFIINGFEKVVVSQLIRSPGVCFRENVRNQQADD-LF 166 Query: 172 YNARIIPYRGSWLDFEFDPK----DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEK 227 IIP GSW++ D + RID+ + +P LRA+ +T E + F Sbjct: 167 NKVEIIPQLGSWMEIFHKVTGNQVDTVKFRIDKHKNIPLLSFLRAIGFTNETVRKYFGNS 226 Query: 228 VIFEIRDNKLQME--------LVPERLRGETASFD--IEANGKVYVEKGRRITARHIRQL 277 + ++E + + + + + + + R A R + Sbjct: 227 PELLESIRRHKLESLEENLELIYRIVRKDDRITEEGLKNLIPSIIFNERRYNLASTGRFM 286 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 + L+ E I+ +A+D + + L L + ++ I Sbjct: 287 LNAKLNLV----ERISQTYLAEDLVSKKNKILFKKGTYITRQLALEIQEKFNNEEIPLSE 342 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 + + + A R E E F Sbjct: 343 I---------------EGVDSTIYA--------RQLEITRNENLWKRFYVAIVKVWPNKK 379 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 S + + + + L DII ++ ++ + G+ DD D L N+RI SVG Sbjct: 380 SMLQESEPVNVIATDPNLNEKTLVLSDIIAIVSYYFNLLSNLGKSDDPDSLVNKRIVSVG 439 Query: 458 EMAENQFRVGLVRVERAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD 516 E+ +NQF + L ++E+ KE++S DL L + +IN KPI K FF SS+LSQFMD Sbjct: 440 ELLQNQFLIALTKIEKNSKEKISTKSDLSQLTVKSIINNKPIYNQFKNFFNSSKLSQFMD 499 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 Q NPL E+ KR++++LGPGGL R+ A FEVRDVH THYGR+CP+ETPEG NIGLI + S Sbjct: 500 QINPLGEMASKRKVTSLGPGGLNRDTAQFEVRDVHTTHYGRICPVETPEGQNIGLILNFS 559 Query: 577 VYAQTNEYGFLETPYRKVTDGVVT-DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 V+++ N+YGF+ TPY +V + +V ++H+L+A EE + AQ+ +D+ Sbjct: 560 VFSRINQYGFIITPYYQVKNRIVDYSKVHWLAASEEFDKSFAQSGVEIDQNN-------- 611 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 +IP N+ + + ++ + Sbjct: 612 ------------------------------RIIPDKLTVRKNQTYLVLDAEQVNYIDV-- 639 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 S + + + +++ + + M Sbjct: 640 ----------------SSMQMTSISASAIPFLENNDANRALMGSNMQRQAV--------- 674 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 P + P+ A G VA Sbjct: 675 -------------PLIKSEAPLV----------------ATGIEEAVARFSAT------- 698 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 + R + T + +++ + + N L K V +G Sbjct: 699 ---NLRAAISGKVTYVDAKKIIIDDGEKPEIHYLRYFEKSNQETLILQK----PTVKVGD 751 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV-----ID 930 +V G L+ +L + +L A + +D+ + V V I Sbjct: 752 KVKKGQ-LICDGPSTDNGELALGKNVLVAFSTWYGYNYEDAIIISEKLVKDDVFTSIHIQ 810 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 Q + L E + + I+ G +LV + + Sbjct: 811 EQTIKFRSTKAGNDILTAEIPNASAKSRLHLDANGIVIVGSEVDTGDILVGRTSPKGEDN 870 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 ++ + + + L + E + ++ ++ QGD+L GV ++ Sbjct: 871 PTAEEKLMAAIWGKKALAQKDTSLRVKNGEGGTVIDVQILSR----DQGDNLEEGVGMLI 926 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 K+ +A KR+I+ GDKMAGRHGNKGV+S I P+EDMP+ E+GTPVDIVLNP GVPSR Sbjct: 927 KILIAQKRKIKVGDKMAGRHGNKGVVSVILPVEDMPFLEDGTPVDIVLNPQGVPSR---- 982 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 IG + L + K Sbjct: 983 -----------MNIGQVLELHLGMVAKKLK------------------------------ 1001 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 TPVFDG K IK+L ++P SG+ +L+DG +G+ FE PV+VGYM Sbjct: 1002 ---------TKFVTPVFDGIKIETIKKLFDEANIPESGKFKLFDGISGQAFENPVSVGYM 1052 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 YMLKL H+VDDKMHARS G YSL TQQPLGGK+Q GGQRFGEME WALE++GA L E+ Sbjct: 1053 YMLKLLHMVDDKMHARSIGPYSLTTQQPLGGKSQNGGQRFGEMETWALESFGATSVLSEL 1112 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 LT KSD++ GR +Y NI+ G PG PESFNVL E+R L I +E+ Sbjct: 1113 LTYKSDNIQGRNLLYNNIISGGKIPSPGTPESFNVLAYELRGLLIKLEVHKN 1164 >UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax=Bigelowiella natans RepID=RPOB_BIGNA Length = 1099 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 329/1200 (27%), Positives = 543/1200 (45%), Gaps = 126/1200 (10%) Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT 216 F + K + + I LD + K L + LP + + Sbjct: 7 FFPNLLKLQRKSFLTFLKYGIKKEIKKLDITKNKKKLLVYPNLFQLNLPTYTCNECVITS 66 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 +L + +D + L + +F + +V + + R + + Sbjct: 67 KTYNCELVIPIRLISYKDEIEWITLTNIPIMTNKCNFITNGSPRVIMSQITRAPGIYYHK 126 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 ++ + IA + + + + L L G + + Sbjct: 127 ENEN-----TYYADIIAERGNWLRIEIDKKNNIWMKVKKVPKVPALMFLQALGVTKSNLI 181 Query: 337 FTNDLDHGPYISETLRVDPTNDRLSALV--EIYRMMR--PGEPPTREAAESLFENLFFSE 392 P ++ + + AL E+Y + + + + F + Sbjct: 182 KLLK---YPIPNQNHNLGNFKSQKEALEKIELYSQLESSINSRNLKNQNKITIFDRFMNP 238 Query: 393 DRYDLSAVGRMKFNRSLL-REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR 451 YDL GR++ N+ EE L+ D I + L+ I+ E DDID+L N+ Sbjct: 239 KYYDLGTRGRIQINKKFNNIEETIQHSTLTSKDFILAVHFLLKIKYKIEETDDIDNLKNK 298 Query: 452 RIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL 511 R++ GE+ ++QF +G++R+++ VK++L + L ++ ++ PI+ + EFFG + L Sbjct: 299 RVKIAGELIQSQFGIGILRLQKYVKDKLG-NIKNNLHLTNIFSSTPINTTLAEFFGVNPL 357 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 SQFMD+ NPL+ +THKRR+S+LG GG+ R+ A +R +HPT YGR+CPIETPEG N GL Sbjct: 358 SQFMDEVNPLATLTHKRRLSSLGIGGVNRDTATLTIRSIHPTLYGRICPIETPEGKNAGL 417 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHF 629 +NS +++A+ N G +ETP+ +V +G + E I+YLSA +E I + G Sbjct: 418 VNSFALFAEINSEGLIETPFFRVCNGRILYEMGINYLSANQEDKSNIVPFDIKKSRIGFL 477 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 ++ + R K + S+ +VD++ +S Q++SV SLIPF+EH+DANR LMG+NMQRQA Sbjct: 478 SKNKIAARIKQQFKEVSKKKVDFISISQLQMLSVATSLIPFMEHNDANRVLMGSNMQRQA 537 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 VP L+ + LVGTG+E + D + G + Y+ +I I +E + Sbjct: 538 VPLLKTECCLVGTGLETKIFFDLQDNVKSPPNGFISYLSLKKITISNIRNEHKSFNFKSN 597 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 TCI S + L Sbjct: 598 PLE--------TITCIKSK-------------------SRNFNRL--------------K 616 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YN +D + S+ ++ I R+ K+ + N G ++++L + Sbjct: 617 YNLKDLLTNSKESLK--------ITNYMSYVREQKIQYYIKQYNSSNQGTCSVNRLTLN- 667 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 G + + L+ ++ +L + L K + +D+ + VI Sbjct: 668 ---EGQFIIKKNPLISGLS-SCRNELALGKNLFVGYISWKGYNFEDAIVLNEQ----LVI 719 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVE 985 + ++T +EK + ++ + + +D+ + L+ +I + + + + Sbjct: 720 N-NIYTSTHLEKFETEIKKNKENSEIITRDIKNISFLNKKNLDKNGIIKIGSRVFSDDIL 778 Query: 986 AEKLDKL------PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 KL + P + L L + + L + + KI + Sbjct: 779 VGKLLPIETRILSPYRKLLYEILQKQNDHYRNTSLRVPKYKRGRITFVDYIKDKGKIKKK 838 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 + LK +K++L R IQ GDK++GRHGNKGVISKI I++MPY +G P+DI+LN Sbjct: 839 TE-ILKDLKTIKIHLMQNRLIQIGDKISGRHGNKGVISKILKIQEMPYLNDGIPLDILLN 897 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQ+LE LG++ + + + + G +V + Sbjct: 898 PLGVPSRMNIGQVLECLLGLSCFYLQRRFKVIPFDES--------------FGFEVSRNF 943 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 S + L G+ R++D +G Sbjct: 944 IYSNLYFSNIKTGNN-------------------------WLLHPYYPGKNRIFDSYSGL 978 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 F++P+T+G Y+LKL HLV++K+HARSTGSYSLVTQQPL GK++ GGQR GEMEVWALE Sbjct: 979 PFDQPITIGKAYILKLIHLVEEKVHARSTGSYSLVTQQPLKGKSKKGGQRVGEMEVWALE 1038 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 YGAAYTL E+LTVKSDD+ R K+ +I++ + G E+F VL++E++SL +NI+ Sbjct: 1039 GYGAAYTLHEILTVKSDDIKSRQKVLTSILNSETI-KFGTTETFKVLIRELQSLCLNIQF 1097 Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 75/354 (21%), Positives = 135/354 (38%), Gaps = 34/354 (9%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 L P LL +Q SF F++ YG++ + + I + ++L P Sbjct: 4 TPLFFPNLLKLQRKSFLTFLK------YGIKKEIKKLD-ITKNKKKLLVYPNLFQLNLPT 56 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 + EC I TY+ L + +RL+ Y+ E + + + IP+MT+ F+ N Sbjct: 57 YTCNECVITSKTYNCELVIPIRLISYKDEI----------EWITLTNIPIMTNKCNFITN 106 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 G+ RVI+SQ+ R+PG+++ H + Y A II RG+WL E D K+N+++++ Sbjct: 107 GSPRVIMSQITRAPGIYY-------HKENENTYYADIIAERGNWLRIEIDKKNNIWMKVK 159 Query: 200 RRRKLPATIILRALNYTTEQILDLFF------EKVIFEIRDNKLQMELVPERLRGETASF 253 + K+PA + L+AL T ++ L + + K +E + + E++ Sbjct: 160 KVPKVPALMFLQALGVTKSNLIKLLKYPIPNQNHNLGNFKSQKEALEKIELYSQLESSIN 219 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDD----VKLIEVPVEYIAGKVVAKDYIDESTGEL 309 + + R L K E I + + L Sbjct: 220 SRNLKNQNKITIFDRFMNPKYYDLGTRGRIQINKKFNNIEETIQHSTLTSKDFILAVHFL 279 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 + D + L K L + G + D + + L Sbjct: 280 LKIKYKIEETDDIDNLKNKRVKIAGELIQSQFGIGILRLQKYVKDKLGNIKNNL 333 >UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=B3L0J5_PLAKH Length = 1371 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 235/1457 (16%), Positives = 457/1457 (31%), Gaps = 270/1457 (18%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY 62 + E+ + L++ Q++S+ FIE + I Sbjct: 66 HDEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQ-------------EIIDE 112 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 E++ + Q R E + + + +K ++ Sbjct: 113 HPALEIR-------------PQAQYRS----------------EGDEQKNVMYALKFGQL 143 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + + P + N T + + Q R + + S Y Sbjct: 144 SL-DRPFYDER-----NLTNKNLWPQEARLRNLTYSSAIYIDIEQ--STYVVDESSGS-- 193 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRAL---NYTTEQI---LDLFFEKVIFEIRDNK 236 + ++ RI+ R +P + +I + F++ + I + Sbjct: 194 ----QILKDKFIYERINLGR-IPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVNGG 248 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 ++ + ER+ + + G R + + + Sbjct: 249 EKVLVAQERMAHNFIYVFKKKQPSKF---GWVAEIRSQMERSQATSAFSVKMKTKTGSRG 305 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI---SETLRV 353 + + L L L + + I D + I ETL Sbjct: 306 SSVRTGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINTLRETLEE 365 Query: 354 DPTN-DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 + L I + P + E + L +G Sbjct: 366 CIDYPTQDICLDFIGKR----GPTVGASREKRILYAKELLRKEVLPHMG----------- 410 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 G I ++ +L+ G+ + DD DH G +R+ G + + F ++ Sbjct: 411 TGPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMA 470 Query: 473 RAVKERLSLGDLDTLMPQDMI----NAKPISAAVKEFFGSSQL-------------SQFM 515 + VK L +D P D+ + I+ ++ + +Q + Sbjct: 471 KDVKRVLQRQ-IDNNKPFDVAGAVRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVL 529 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 ++ S ++H RR++ L RE + R +H TH+G +CP ETPEG ++GL+ +L Sbjct: 530 NRLTYSSCLSHLRRLNT----PLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNL 585 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL----DEEGHFVE 631 S+ + G + + + + V N ++ + +E Sbjct: 586 SLMCDISV-GTSTNNIFEFLLEWGLESLDEVPPQLMKEKVKLFLNGKWVGCFNQIDNLIE 644 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 L R + + S + D + F + A R L Sbjct: 645 TLYELRRRCDISPEASIVRDV----------NSKEIKIFTDSGRAMRPLYVVKN------ 688 Query: 692 TLRADKPLVGTGME---RAVAVDSGVTAVAKRGGVVQYVDASRIVI-------------- 734 ++ + L T ++ + G+++Y+D Sbjct: 689 -VKGENKLKLTKEHVKNMMAYPETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGT 747 Query: 735 ----KVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 E++P I + + +S +NT + M ++G V ++ D Sbjct: 748 GYHNNYTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMGIYVTNFNIRLDTL 807 Query: 788 S------------------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 + EL G N VA M + GYN EDS+++++ + F Sbjct: 808 AHLLYYPQRPLVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFR 867 Query: 830 TIHIQELACVSRDTKLGPEEIT-----ADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 ++ + + E + N+ +KLD G++ G V G DI++ Sbjct: 868 SVFYRTYTSEEKQQGSLIIESFEKPSIRYVKNLKRGDYTKLDNDGLIAPGIRVLGDDIII 927 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS----GTVIDVQVFTRDGVE 940 GKV+P E + + + I S +S G G+V++ + G Sbjct: 928 GKVSPNIEDEDDIVIQRMPNIQMGYNSG-ASTSNGFMIGKESSAGGSVLNGSASSVCGSV 986 Query: 941 KDKRALEIEE--MQLKQAKKDLSEELQILEAG-------LFSRIRAVLVAGGVEAEKLDK 991 + + D + +G + + + + + Sbjct: 987 SSSPYSPSTMGGSNMMDSMPDSPVSDRYSSSGPVGSATVGPASVSSSTPSNTTIFRSGNT 1046 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD---------- 1041 + + G T + + K+ + + ++ Sbjct: 1047 ISSVNSPQYGTTIVSGSTKDDLEIPTLTISTSNILKQYKKDCSLSLRENENGVIDTVMLS 1106 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 K KV + R Q GDK A RHG KG I EDMP+ +GT DI++NP Sbjct: 1107 SNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSDGTFPDIIMNPH 1166 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 VPSRM IG ++E G A G + +A + V ++ + + + Sbjct: 1167 AVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSKITVQEISQRLHNLGYEKYGNDVLYNG 1226 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 +G+ Sbjct: 1227 --------------------------------------------HNGK----------ML 1232 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + + +G Y +L H+V+DK+HARS G +++T+QP G+++ GG RFGEME + ++ Sbjct: 1233 KSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISH 1292 Query: 1282 GAAYTLQEMLTVKSD----DVNGRTKMYK------------NIVDGNHQMEPGMPESFNV 1325 G+A L+E L +SD V + + + +P + + Sbjct: 1293 GSAKMLKERLFEESDAYRVHVCDNCGLCCIADINKNAYECTVCNSKTNISQIYIPYACKL 1352 Query: 1326 LLKEIRSLGINIELEDE 1342 L +E+ ++ I +L E Sbjct: 1353 LFQELMTMAIYPKLVLE 1369 >UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 Tax=Bacteria RepID=RPOB_MYCCT Length = 1287 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 381/978 (38%), Positives = 572/978 (58%), Gaps = 86/978 (8%) Query: 95 PLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPG 154 P +++ ++ ++ + V K EV++G+ PLMT+ GTF+ING+++VIVSQL RSPG Sbjct: 157 PDLIQIDIIEDKKTSLICNVSIYKSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPG 216 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN-------LFVRIDRRRKLPAT 207 +F+ + + +G+++Y A IIP RG+WL++E D K L+V+ID+ RK AT Sbjct: 217 AYFNKELNRK--TGEMIYFADIIPSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTAT 274 Query: 208 IILRALNYTTEQILDLFFEKV-------------IFEIRDNKLQMELVPERLRGETASFD 254 +L A + + IL++F F+I + E+ + +GETA+ + Sbjct: 275 SLLLAFGISKDDILNIFDNDEVLVETLQQDSIIGDFKIDWSNQVQEIYKKIRQGETATSE 334 Query: 255 --IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + +K + + R K + + I KV+A+D +D + ++ A Sbjct: 335 GASKFINSILFDKRKYDLTKAGRFKLKQKLSI----KNRILNKVIAEDILDANNN-VLIA 389 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 + E++ + + ++S+ + + ++ L P + V+ R+ + Sbjct: 390 KDTEVTKNNIQEISKILDQDVMSIDLKYLSDIPGNRK--------------VQKIRVYKD 435 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 E T + ++ DI+ + L Sbjct: 436 SELKTDTTCL--------------------------IGLTNSSNEEFITVADILSTVSYL 469 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM 492 ++++ GE+DDID+LGNRR+R+VGE+ +NQFR+GL R+++ VKE+L+ DL + + Sbjct: 470 LNLKYNIGEIDDIDNLGNRRVRTVGELLQNQFRMGLNRIDKNVKEKLATSDLYKVKTSTI 529 Query: 493 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 INAKP++A + EFF SQLSQFMDQ NPLSE+T+KRR++ALGPGGL+R+RAG EVRDVHP Sbjct: 530 INAKPLTAIIGEFFNLSQLSQFMDQINPLSELTNKRRLTALGPGGLSRDRAGLEVRDVHP 589 Query: 553 THYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE-IHYLSAIEE 611 +HYGR+CPIETPEGPNIGLIN+LS YA+ NEYGF+ TPYRKV +G++ ++ + YL+A +E Sbjct: 590 SHYGRICPIETPEGPNIGLINNLSTYARVNEYGFITTPYRKVINGIIQNDQVEYLTADQE 649 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 N++IAQ+N N DE G +++++ R G+ + +++ Y+DVS +Q+VSV S IPFL Sbjct: 650 KNFIIAQSNVNQDENGKILDEIIVSRFNGDDYMAKVEEIHYIDVSPKQIVSVATSGIPFL 709 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 E+DDANRALMGANMQRQAVP ++ + P+V TG+E A DSG VAK +V+YVD+ Sbjct: 710 ENDDANRALMGANMQRQAVPLIKPESPIVATGIEFEAARDSGEAIVAKEDAIVKYVDSKT 769 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 I + GE+GI Y L+ Y RSN T + Q P V +G+ V++G+++ADGPS D Sbjct: 770 I--------ITDGESGIRTYILSDYERSNNGTSLTQSPIVKVGDVVKKGEIIADGPSMDQ 821 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 GELA+GQN+ VAF +NGYNFED+I++SER+V +DRFT+IHI E R+TK G EE+T Sbjct: 822 GELAIGQNVVVAFSTYNGYNFEDAIVMSERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVT 881 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 +IPN+ E A LD GIV IG EV GD+LVGKVTPKG+ QL+PE+KLL AIFGEK+ Sbjct: 882 REIPNMSEQAKRHLDAEGIVAIGTEVKVGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSR 941 Query: 912 DVKDSSLRVPNGVSGTVIDVQVF------TRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 +VKD+SLRVPNG G V ++ F DG+E +E+ ++ + Q +K + Sbjct: 942 NVKDNSLRVPNGGEGIVQSIKRFKAKSALNPDGIELPADIIEVIKVYVVQKRKIQEGDKM 1001 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 G I +L + D P D L + N + L + Sbjct: 1002 SGRHGNKGIISRILPIEDMPH-LEDGTPVDIILN-PQGVPSRMNIGQILEIHLGMAAKKL 1059 Query: 1026 EKKLEAKRRKITQGDDLA 1043 +K+ + +L Sbjct: 1060 NQKVITPVFEGLNEKELE 1077 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 313/1415 (22%), Positives = 521/1415 (36%), Gaps = 265/1415 (18%) Query: 1 MVYSYTE--KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 M Y + + R+D+ K L +P L+ IQ ++F+ F G++ FP Sbjct: 1 MAYKIRKINRNVERRDYTKVSMNLSLPNLIGIQTETFEWF------KTKGIQEVLDEFFP 54 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I S+ G+S L ++ EP V++ + Y AP+ L+L + + E + + Sbjct: 55 ILSFDGSSVLTLENWGFKEPRLSVRQAREESKIYDAPIYANLKLSVNKTEEIQKEFDGVD 114 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 +++ +V+ L G + K S + I Sbjct: 115 QEDTL-------------------KVLTHWLEEKTGN--GNITFKQQSQNSYFFEITIKK 153 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 D + + I +K + + ++ Sbjct: 154 SE---------KPDLIQIDIIEDKKTSLIC-------------------NVSIYKSGEVF 185 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + P L E +F I + KV V + R + + + + I + Sbjct: 186 LGDFP--LMTEAGTFIINGSQKVIVSQLVRSPGAYFNKELNRKTGEMIYFADIIPSRGTW 243 Query: 299 KDYIDESTGE-------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 +Y +S L + + L G + + L N D+ + ETL Sbjct: 244 LEYETDSKKIGSDAINPLYVKIDKSRKTTATSLLLAFGISKDDIL--NIFDNDEVLVETL 301 Query: 352 RVDPT-----NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + D D + + EIY+ +R GE T E A ++ F + +YDL+ GR K Sbjct: 302 QQDSIIGDFKIDWSNQVQEIYKKIRQGETATSEGASKFINSILFDKRKYDLTKAGRFKLK 361 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLI--------DIRNGKGEVDDIDHLGNRRIRSVGE 458 + L + + ++++D + LI + ++ D D + Sbjct: 362 QKLSIKNRILNKVIAEDILDANNNVLIAKDTEVTKNNIQEISKILDQDVMS--------- 412 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + ++ + + K R+ +I ++ + E F + D Sbjct: 413 -IDLKYLSDIPGNRKVQKIRVYKDSELKTDTTCLI---GLTNSSNEEFIT-----VADIL 463 Query: 519 NPLSEITHK---------------RRISALG-------PGGLTRERAGFEVRDVHPTHYG 556 + +S + + RR+ +G GL R + + + Sbjct: 464 STVSYLLNLKYNIGEIDDIDNLGNRRVRTVGELLQNQFRMGLNRIDKNVKE-KLATSDLY 522 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI 616 +V +IN+ + A E+ L D+I+ LS + + Sbjct: 523 KV--------KTSTIINAKPLTAIIGEFFNLSQ------LSQFMDQINPLSELTNKRRLT 568 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ-----------VVSVGA 665 A L + R+ E Y + + +S A Sbjct: 569 ALGPGGLSRD----------RAGLEVRDVHPSH--YGRICPIETPEGPNIGLINNLSTYA 616 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG-----VTAVAKR 720 + + R ++ +Q V L AD+ + V D V++ Sbjct: 617 RVNEYGFITTPYRKVINGIIQNDQVEYLTADQEKNFIIAQSNVNQDENGKILDEIIVSRF 676 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 G Y+ + ++ + +N+ M P+ + Sbjct: 677 NG-DDYMAKVEEIHYIDVSPKQIVSVATSGIPFLENDDANRALMGANM--QRQAVPLIKP 733 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV---SERVVQEDRFTTIHIQELA 837 + + VA ED+I+ S+ ++ + Sbjct: 734 ESPIVATGIEFEAARDSGEAIVAK--------EDAIVKYVDSKTIITDG----------E 775 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 R L E + L +S IV +G V G+I + + +L Sbjct: 776 SGIRTYILSDYE--------RSNNGTSLTQSPIVKVGDVVKKGEI-IADGPSMDQGELAI 826 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 + ++ A + +D+ + VID + + E ++ Q + + Sbjct: 827 GQNVVVAFSTYNGYNFEDAIVMS----ERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVTR 882 Query: 958 KDLSEELQILEA---------GLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 + + Q G ++ VLV ++ P D+ L ++ + Sbjct: 883 EIPNMSEQAKRHLDAEGIVAIGTEVKVGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSRN 942 Query: 1009 NQLEQLAEQYDELKHEFE-KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 + L K+ +AK G +L +++++KVY+ KR+IQ GDKM+ Sbjct: 943 VKDNSLRVPNGGEGIVQSIKRFKAKSALNPDGIELPADIIEVIKVYVVQKRKIQEGDKMS 1002 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 GRHGNKG+IS+I PIEDMP+ E+GTPVDI+LNP GVPSRMNIGQILE HLGMAAK + K Sbjct: 1003 GRHGNKGIISRILPIEDMPHLEDGTPVDIILNPQGVPSRMNIGQILEIHLGMAAKKLNQK 1062 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 + + + +L E + A +D + G P P Sbjct: 1063 VITPVFEGLNEKELEEIMAEAGMTNYGKVTLIDG---------------QTGEPFDKP-- 1105 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 + VG MYMLKL+H+VDDK+HAR+ Sbjct: 1106 -------------------------------------IAVGVMYMLKLSHMVDDKIHARN 1128 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 G YSL+TQQPLGGKAQ GGQRFGEMEVWALEAYGAA+TL+E+LT+KSDD+ GR+K Y+ Sbjct: 1129 VGPYSLITQQPLGGKAQNGGQRFGEMEVWALEAYGAAHTLREILTIKSDDIKGRSKTYEA 1188 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 IV EPG+PESFNVL KEI LG N+ + DE Sbjct: 1189 IVRSKRIPEPGIPESFNVLSKEIMGLGFNMYMIDE 1223 >UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota RepID=C1E1U0_9CHLO Length = 1178 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 208/1379 (15%), Positives = 428/1379 (31%), Gaps = 264/1379 (19%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 + + L QLDSF +FI+ + I + ++ Sbjct: 16 QEDAWTVISSFFEEKGLARQQLDSFNEFIQHTMQ-------------EIVDEMSDFTIE- 61 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 +E + E + ++ +++Y+ + P++ Sbjct: 62 -----------PEE---------------QHMPGEEADGKGKKKYKVEFKQIYLSK-PMV 94 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 T+ +G + + R + + + + + I G +++ D Sbjct: 95 TEA-----DGMTSTLFPKEARLRNLTYSAPLYIDMAKSTITTTDEIDATTGKYIE-TIDT 148 Query: 191 KDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 ++ V K+P + + + +L + + L + Sbjct: 149 EEYPKVFFG---KVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFIINGSEKVLIAQ- 204 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + + VYV + R+ + + + ++ + G + Sbjct: 205 ---EKMSTNHVYVFEKRQPSKYMWVAECRSSPESGARAASSCMARLCHAPGTKDEAGVIS 261 Query: 311 CAANMELS-LDLLAKLSQSGHKRIETLFTNDLDHGP------YISETLRVDP-TNDRLSA 362 + + L G + + + + + ++ + A Sbjct: 262 VTIPYIRTEIPLFVVFRALGFVADKDILEHLVYDFEDHEMMQLLRNSIEEAQVIQSQDVA 321 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L I + + + L VG EG Sbjct: 322 LDFIGKR----GSAVGVTRPKRIQYAREILQKELLPHVG-----------VNEGCETKKA 366 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLS 480 + ++ +L+ G+ + DD DH GN+R+ G + FR +V + V+ + Sbjct: 367 YFLGYIVNRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQLFRKVTKDVRLYSQRC 426 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKR 528 + + + AK I++ +K + SQ +++ + S ++H R Sbjct: 427 IDSGKDIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLR 486 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+++ + RE + R +H +H+G VCP ETPEG +GL+ +LS+ + G Sbjct: 487 RLNS----PIGREGKLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSV-GSPS 541 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESSL 644 P + + + + +S N N V+ L R K + ++ Sbjct: 542 APLLEFLEEWSMENLEEISPSVIVNATKIFVNGVWVGVHREPAQLVQTLRNLRRKLDITI 601 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 V + + ++ + I L + N ++ + +K + G Sbjct: 602 EVGV-VHDIALRELRLYTDYGRCIRPLFIVEDNHLVIKKKDIQMLY-----EKEITG--- 652 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 G ++YVD + + I L Sbjct: 653 --------YTWNDLVATGCIEYVDTEEEETTM---------IAMTIDEL----------- 684 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 + Q G PS LG + + +P+ +N S + + Sbjct: 685 VGQRINAEPGGVKHMYTHCEIHPSMILG-------ICASIIPFPDHNQ--SPRNTYQSAM 735 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 + +++ R L P V A+ L Sbjct: 736 GKQAMGMYVTNFQI--RMDTLAYVLFYPQKPLVTTRAMEHL------------------- 774 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 +L ++ I + +DS + + + + +F R +++K+ Sbjct: 775 ------HFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSID-RGLFRSIFYRSFKDEEKK 827 Query: 945 ALEIEEMQLKQAKKD-----LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + +L++ +D L+ + + K LP D Sbjct: 828 QGSLTKEELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGEDIIIGKTSPLPED---- 883 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + ++ ++ + + + +T D L+ VK+ + R Sbjct: 884 ------DPSAVSKRFTKRDCSTGMKNSETGIIDQVLLTTND----QGLRFVKIRVRSCRT 933 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 Q GDK + RHG KG I EDMP+ G DI++NP +PSRM IGQ++E +G Sbjct: 934 PQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRMTIGQLVECLMGK 993 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 A +G + +A V + + + + G Sbjct: 994 VAAMMGKEGDATPFTPVTVESISDMLHMCGYQKRGNEVMYNG---------------HTG 1038 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 + +F +G Y +L H+V Sbjct: 1039 RKLEAKIF---------------------------------------LGPTYYQRLKHMV 1059 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+H+R G ++T+QP+ G+++ GG RFGEME + ++GAA L+E L +SD Sbjct: 1060 DDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYR 1119 Query: 1300 GRTKMYKN-------------IVDG----NHQMEPGMPESFNVLLKEIRSLGINIELED 1341 ++ MP + +L +E+ S+ + L Sbjct: 1120 IHVCETCGLIAVANLKNQTFECCKNPSERTKVVQVMMPYACKLLFQELMSMAVAPRLVT 1178 >UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEK8_PEDMN Length = 1157 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 305/1194 (25%), Positives = 508/1194 (42%), Gaps = 185/1194 (15%) Query: 212 ALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFDIEANGKVYVEKGRR 268 AL Y LF + +++ + V L + F + +V + + R Sbjct: 68 ALLYGKSYASRLFLPVQLTNQVTGEIKFQWVLLGTLPLLTKRGHFILNGCPRVVINQLIR 127 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 + ++ + I ++I + +++ + + +L L Sbjct: 128 SPGVYYQKRLDSQKRDI-FYADFICERGAWLRIEMDTSQRIWARMKRTPKIPVLILLQSM 186 Query: 329 GHKRIETLFTNDLDHGPYISETLRVDPTN------------------------DRLSALV 364 G + ++++L + +AL Sbjct: 187 GMSLQTIF--SSTSQRTILAKSLLPYEQKGKTKTLPKLVKAQNPLLLVRRHPVSQDTALK 244 Query: 365 ----EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 I + E + F + YDL +GR++ N+ L Sbjct: 245 VLSALIQARTKKEILVNSEMGKKFLMKKFRNPRSYDLGFIGRLRLNKRFGLSIATSYRQL 304 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL- 479 + +DI + LI + G +DDIDHL NRR+RS+GE+ + Q + L+R+E+ +++R Sbjct: 305 TAEDIFHSVNLLISVSQGVASLDDIDHLENRRVRSIGELLQIQLGLALLRLEKMIRDRSS 364 Query: 480 ----SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 + + I+ K ++ A++EFFGSS LSQF+DQ NPL+E+THKRR+++LGP Sbjct: 365 FLLENNVSSVAKDIRSFISTKALNGAMREFFGSSPLSQFLDQTNPLAELTHKRRLTSLGP 424 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 G++RE AG VR +HP+HYGR+CPIETPEG N GL+NSL+VY++ ++ GF+++P+ + Sbjct: 425 SGVSRETAGMAVRGIHPSHYGRICPIETPEGQNAGLVNSLTVYSRVDQNGFIQSPFYLLN 484 Query: 596 DGVVTD--EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 +G + + +LSA +E + I + + + G D + R E Sbjct: 485 NGQIQKEANLTFLSAKDEMSKTIIPGDIHFNSLGFIENDSLPSRKNQEFVR--------- 535 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 QR + + S Sbjct: 536 -------------------------------QQRGNIDLIAT----------------SP 548 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 + ++ ++ +++ + M T + P V Sbjct: 549 LQMISVATSLIPFLEHDDANRALMGSNMQRQAVP---------------TLYAERPRVGT 593 Query: 774 G---EPVERGDVLADGPSTDLGELALGQNMRV--------AFMPWNGYNFEDSILVSE-- 820 G + V + + Q + + F+P F +++ S+ Sbjct: 594 GLESKIVTDIGHIVQTRWSGYVSYVDSQKIIIQSFVKHSETFLPTQSIRFLETVSTSKKY 653 Query: 821 -RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN---VGEAALSKLDESGIVYIGAE 876 ++ D + ++ + E T + G + + IV G Sbjct: 654 SSSLKTDSIEKVFLKSKPGELKTKLEEYEFKTVEYLLENYSGSNQSTFFVQKPIVSEGDW 713 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 V GDIL + + +L LL A + + +D+ L +S ++ ++T Sbjct: 714 VEAGDIL-ADGSASEKGELALGHNLLVAYIPWEGFNFEDAIL-----ISERLVTQDLYTS 767 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQI----------LEAGLFSRIRAVLVAGGVEA 986 +EK + + + L++ L + + ++ G + + +LV Sbjct: 768 LHIEKYEMEIRETKFGLEKITNKLPDVRKKDLKNLDAQGIVKPGTWVQEGDILVGKVTPI 827 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 K P +R L + + L + ++ K G++ V Sbjct: 828 RKKPLSPHERLLYDIVGKINPTVRDSSLRVPRGTQARVLDIQIIYSDEKTKLGEEFVGKV 887 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 V++ LA +RRIQ GDKMAGRHGNKG+IS+I PI+DMPY +GTP+DIVLNPLGVPSR Sbjct: 888 PLKVQILLAQRRRIQVGDKMAGRHGNKGIISRILPIQDMPYLPDGTPLDIVLNPLGVPSR 947 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQ+ E L +A + +G+ + + G + + + S + Sbjct: 948 MNVGQVYECLLSLAGRYLGENYRVVPFDE--------------LFGPHISRSLTYSKLYE 993 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 + + L + G+ +++DGRTGE F++PVT Sbjct: 994 SSLKN-------------------------KQHWLFNPNCPGKTKIFDGRTGECFDQPVT 1028 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWALE +GAAY Sbjct: 1029 VGEAYVLKLVHLVDDKIHARSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGFGAAYI 1088 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LQE+LTVKSDDV GR K+ +I+ G + G PE F VL+KE++SL +++ + Sbjct: 1089 LQELLTVKSDDVKGRHKIMYSILTGKNM-TMGTPECFKVLVKELQSLCLDVGVY 1141 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 19/212 (8%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS- 72 F ++L P L IQ SF KF+E G+ + PI S + ++ + Sbjct: 2 SFNNISKLLT-PDFLEIQRVSFVKFLES------GIINEIKRRNPITSSAKEYQIFFYPE 54 Query: 73 -YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 Y+L P F ++ + G +Y++ L + ++L +IK Q V +G +PL+T Sbjct: 55 AYQLEAPEFSPKDALLYGKSYASRLFLPVQLTN-------QVTGEIKFQWVLLGTLPLLT 107 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 G F++NG RV+++QL RSPGV++ + S + ++ A I RG+WL E D Sbjct: 108 KRGHFILNGCPRVVINQLIRSPGVYYQK---RLDSQKRDIFYADFICERGAWLRIEMDTS 164 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDL 223 ++ R+ R K+P I+L+++ + + I Sbjct: 165 QRIWARMKRTPKIPVLILLQSMGMSLQTIFSS 196 >UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax=Ostreococcus tauri RepID=RPOB_OSTTA Length = 1088 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 312/1208 (25%), Positives = 491/1208 (40%), Gaps = 157/1208 (12%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R + R FF G++ S R I F KD F ++ Sbjct: 22 RYFLETGIREELDFFSPIVGQSLGSSSKRPTDRFIS-------VSFHSKDFYF----KKP 70 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 ++ L ++ + + + L E +F + + +V Sbjct: 71 HYTPQEAVQKLGTYKSSLIVPVHVYSKYLNLNATFPVAFCDLPLMTEHGTFILNGSPRVI 130 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 V + R +++ + V +++ + + G + + + + Sbjct: 131 VHQIVRCPGVYLKPQFDKQGNRTHL-VSFLSAYGSWLRFETDKKGVVFAHIDNLRKVPVT 189 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRV-DPTNDRLSALVEIYRMMRPGEPPTREAA 381 L G + L + + TL+ D A++ + + P P T Sbjct: 190 VFLQALGFSMDTIVGA--LKYPEALDPTLKEVDWKLTTDEAILLLMSRLFPNRPATVLRG 247 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 N FF+ RY LS VGR + N+ L+ D + + L+ NG+ E Sbjct: 248 RKFLFNQFFNPRRYSLSDVGRKRVNQKFRMRSKTKHLTLTPQDALAALDYLLRCENGETE 307 Query: 442 V-DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP------QDMIN 494 DDIDHL NRR R GE+ + QFR+GL R+ER + R+S ++ P +I Sbjct: 308 FLDDIDHLKNRRARLAGELIQTQFRLGLNRLERVIYNRISDENILRKTPGALGSLNSLIR 367 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + +++ +EFFGS+QLSQFMDQ NPL+EITHKRR+S+LGPGGL R+RAG VR +HP++ Sbjct: 368 TQVLASVFQEFFGSNQLSQFMDQTNPLAEITHKRRLSSLGPGGLNRDRAGLIVRGIHPSY 427 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 YGR+CPIETPEG N GL+ S++ + Q N+ GFLE+PY K+ T + Sbjct: 428 YGRICPIETPEGKNAGLVGSIATFTQINKNGFLESPYYKLISESNTPD------------ 475 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 G L + + D + Q ++ + Sbjct: 476 -----------------------RNGFFLLSAFYEEDTV---VAQGDVDLSNFRIPTRNK 509 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 Q + +G + ++ ++ +++ Sbjct: 510 S------------QFTENTVQEINFLGLCPIQF---------MSIATSLIPFLEHDDANR 548 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + M + ++ P V G + Sbjct: 549 ALMGSNMQRQAV---------------SLLRSERPFVGTGLEAHVTRDIGATIVAKQNSY 593 Query: 795 ALGQNM--RVAFMPWNGYNFEDSILVSER-VVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 + F P G D+ L+ + + ED F + + + ++ Sbjct: 594 ISYVDAQRIDYFTPVIG----DTNLIDYQNLTAEDVFASNQFKHNTIWLTSYQRSNQD-- 647 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 + L+ +V V GD L + +L +L + Sbjct: 648 -----------TCLNHKPLVEANTWVEAGDCL-ADNAATAKGELALGRNILIGYMPWEGY 695 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGL 971 + +D+ L V V +R V + E + + +E +++ G Sbjct: 696 NFEDAVLVSERLVYDDVFTSIHISRYEVSTARLREGQEYFTNQVDRNQYLDEFGVVKIGT 755 Query: 972 FSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 + VLV D P R L + + + + E Sbjct: 756 WVEAGDVLVGKISPQPDSDNDPESRLLRAIFGGVARNTKTTSYCLSSGVSGRILDVRCEF 815 Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 KR+ D+ V VYL KRR+Q GDK+AGRHGNKG++S I P DMPY ++G Sbjct: 816 KRQTKNIEDESIESTGS-VYVYLVEKRRLQVGDKVAGRHGNKGIVSNILPRVDMPYLQSG 874 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 +D+VLNPLGVPSRMN+GQI E LG+AA + + + Sbjct: 875 KALDMVLNPLGVPSRMNVGQIFECLLGLAANTLKQNFKVLPFDEM--------------H 920 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 GA+V + ++ + L + G+ Sbjct: 921 GAEVSRGFVYHYLYKSRLLTQQK-------------------------WLFKPNSPGKSI 955 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 ++DGRTG F++PVTVGY Y+LKL HLVDDK+HARSTG YSLVTQQPLGG+++ GGQR G Sbjct: 956 VFDGRTGLNFDQPVTVGYPYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRSKKGGQRLG 1015 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EMEVWALE +GAAY LQE+LT+KSDD+ GR + + +++ G + G+PESF VL+ E+R Sbjct: 1016 EMEVWALEGFGAAYVLQELLTIKSDDMIGRNRAFMSMIRGTLLPKSGIPESFKVLVSELR 1075 Query: 1332 SLGINIEL 1339 L +++ + Sbjct: 1076 GLCLDMSI 1083 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 261/1058 (24%), Positives = 426/1058 (40%), Gaps = 176/1058 (16%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ----------SYSGNSELQY--V 71 +P L Q DSF+ F+E G+ PI + + Sbjct: 10 LPNFLDSQRDSFRYFLE------TGIREELDFFSPIVGQSLGSSSKRPTDRFISVSFHSK 63 Query: 72 SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 + +P + QE + TY + L V + + V ++PLMT Sbjct: 64 DFYFKKPHYTPQEAVQKLGTYKSSLIVPVHVYSKYLNLNATFP-------VAFCDLPLMT 116 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 ++GTF++NG+ RVIV Q+ R PGV+ K G + + GSWL FE D K Sbjct: 117 EHGTFILNGSPRVIVHQIVRCPGVYLKPQFDKQ---GNRTHLVSFLSAYGSWLRFETDKK 173 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETA 251 +F ID RK+P T+ L+AL ++ + I+ + ++ + Sbjct: 174 GVVFAHIDNLRKVPVTVFLQALGFSMDTIVGALKYPEALDPTLKEVDWK----------- 222 Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + + + R R P + G+ + + Sbjct: 223 ---LTTDEAILLLMSRLFPNR---------------PATVLRGRKFLFNQFFNPRRYSLS 264 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + + + + T AL + ++R Sbjct: 265 DVGRKRV------------------------NQKFRMRSKTKHLTLTPQDALAALDYLLR 300 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 + + L + +K R+ L E+ + + + Sbjct: 301 C-----------------ENGETEFLDDIDHLKNRRARLAGELIQTQFR------LGLNR 337 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEM--AENQFRVGLVRVERAVKERLSLGDLDTLMP 489 L + + ++I L ++ G + + R + + +E L M Sbjct: 338 LERVIYNRISDENI--LR----KTPGALGSLNSLIRTQV--LASVFQEFFGSNQLSQFMD 389 Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 Q A+ G L++ D+ + + + P R Sbjct: 390 QTNPLAEITHKRRLSSLGPGGLNR--DRAGLI--------VRGIHPSYYGR--------- 430 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE---IHYL 606 +CPIETPEG N GL+ S++ + Q N+ GFLE+PY K+ T + L Sbjct: 431 --------ICPIETPEGKNAGLVGSIATFTQINKNGFLESPYYKLISESNTPDRNGFFLL 482 Query: 607 SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGAS 666 SA E + V+AQ + +L + R+K + + + +++++ + Q +S+ S Sbjct: 483 SAFYEEDTVVAQGDVDLS------NFRIPTRNKSQFTENTVQEINFLGLCPIQFMSIATS 536 Query: 667 LIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQY 726 LIPFLEHDDANRALMG+NMQRQAV LR+++P VGTG+E V D G T VAK+ + Y Sbjct: 537 LIPFLEHDDANRALMGSNMQRQAVSLLRSERPFVGTGLEAHVTRDIGATIVAKQNSYISY 596 Query: 727 VDASRIVI---------------KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 VDA RI ED + + LT Y RSNQ+TC+N P V Sbjct: 597 VDAQRIDYFTPVIGDTNLIDYQNLTAEDVFASNQFKHNTIWLTSYQRSNQDTCLNHKPLV 656 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 VE GD LAD +T GELALG+N+ + +MPW GYNFED++LVSER+V +D FT+I Sbjct: 657 EANTWVEAGDCLADNAATAKGELALGRNILIGYMPWEGYNFEDAVLVSERLVYDDVFTSI 716 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 HI + + G E T + LDE G+V IG V GD+LVGK++P+ Sbjct: 717 HISRYEVSTARLREGQEYFTNQVDRN-----QYLDEFGVVKIGTWVEAGDVLVGKISPQP 771 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV----QVFTRDGVEKDKRALE 947 ++ PE +LLRAIFG A + K +S + +GVSG ++DV + T++ ++ + Sbjct: 772 DSDNDPESRLLRAIFGGVARNTKTTSYCLSSGVSGRILDVRCEFKRQTKNIEDESIESTG 831 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + L + ++ + G + +L + D L L + Sbjct: 832 SVYVYLVEKRRLQVGDKVAGRHGNKGIVSNILPRVDMPY-LQSGKALDMVLN-PLGVPSR 889 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 N + + ++ + G +++ G Sbjct: 890 MNVGQIFECLLGLAANTLKQNFKVLPFDEMHGAEVSRG 927 >UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQN5_FIBSS Length = 1429 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 367/796 (46%), Positives = 502/796 (63%), Gaps = 91/796 (11%) Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL---VTCRSKGESSL----- 644 V + +V+D I YL+A EE ++ +A A++ LDE F D+ V R K E Sbjct: 670 DVVEQIVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYVIVRDKSEYPHLMKQD 729 Query: 645 ------FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 +++D MDV+ Q+VSV A LIPFLEHDDANRALMG+NMQRQAVP LRA+ P Sbjct: 730 SIAIGDTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLLRAEAP 789 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK--------------VNEDEMYPG 744 +VGTG+ER A+DSG AK G V +VDA I ++ + E+ + G Sbjct: 790 VVGTGLERRAALDSGTVVRAKHDGKVTFVDARNITVQRGKMVNGVFEPLTGLGENYEFLG 849 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 + ID Y L K+ RSNQ++CINQ P V++G+ VE GDVLADG STD GELALG+N+ + F Sbjct: 850 KDPIDEYTLRKFERSNQDSCINQKPIVNVGDFVEVGDVLADGVSTDHGELALGKNILIGF 909 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 +PWNGYN+ED++++SE + +D FT+IHI+E RDTK GPEE+T +IPNVGE AL Sbjct: 910 LPWNGYNYEDAVIISEELAIKDTFTSIHIEEYEMEVRDTKRGPEELTREIPNVGEDALRN 969 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 LDE+G++ +GAEV DILVGKVTPKGET+LTPEE+LLRAIFGEKA DV+DSSL+ P G+ Sbjct: 970 LDENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEKAGDVRDSSLKAPPGM 1029 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G V++ ++F++ + DK++ E ++ +++ +++ ++ ++ + +L Sbjct: 1030 KGVVLETRIFSKK-DKADKKSKEKDQETIEEIRQNFQSQIDRIKDACREHLFDLLAGKSA 1088 Query: 985 ----------------------EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK 1022 +D + D++ Q+++ L + Sbjct: 1089 GKVMDNETHELLIREGQTYNEQNLRLIDVTKVSPLSTFVVDDDDLQDKVLSLVLVARDNL 1148 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 + +E + K+T+GD+L PGVLK VKVY+A KR + GDKMAGRHGNKGV+S+I P+ Sbjct: 1149 DTLTRTMEKEIDKVTKGDELKPGVLKSVKVYIAKKRCLSIGDKMAGRHGNKGVVSRIVPV 1208 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMP+ E+G P+ I+LNPLGVPSRMNIGQ+LE HLG AAK +G K+ + + + Sbjct: 1209 EDMPFTEDGRPLQILLNPLGVPSRMNIGQVLEVHLGWAAKTLGFKVTTPVFDGAKFEDIC 1268 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 + +++AY V ++D Sbjct: 1269 KELEKAYQKNPIVNYEMDPDNNKII----------------------------------- 1293 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 G+ +LYDG+TGE PVT+GYMY LKL HLVDDK+HARS GSY+LVTQQPLGGK Sbjct: 1294 -----GKAKLYDGKTGEALLNPVTIGYMYYLKLGHLVDDKIHARSIGSYALVTQQPLGGK 1348 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES 1322 +QFGGQRFGEMEVWA+EAYGAAYTLQE+LTVKSDDV GR+K+Y IV G + +PG+PES Sbjct: 1349 SQFGGQRFGEMEVWAMEAYGAAYTLQELLTVKSDDVQGRSKVYDAIVKGQNTPKPGIPES 1408 Query: 1323 FNVLLKEIRSLGINIE 1338 FNV+++E+ SLG++IE Sbjct: 1409 FNVMIREVHSLGLDIE 1424 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 298/1104 (26%), Positives = 470/1104 (42%), Gaps = 148/1104 (13%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGN 65 RK + L++PYL+ +Q S+++F+++D GLE FR +FPI Sbjct: 3 TERKSYSSNKFHLELPYLIEVQKASYEQFLQKDIPQEKRMNVGLERVFRDIFPITDDKDL 62 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 L+Y Y G P + + EC+ RG+TYS L L L ++E++ E +K+ + +V + Sbjct: 63 YSLKYEGYYFGIPKYSIPECRERGLTYSMELFATLSLQVFEKDGEESKLKEEIKNDVLVC 122 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 ++P+MT+NGTF+ING ERV+VSQLHRSPGV FD + +G+ Y +RIIP+RG+W++ Sbjct: 123 DLPIMTENGTFIINGAERVVVSQLHRSPGVSFDEEMQP---NGRSDYKSRIIPHRGAWVE 179 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPE 244 F + D L++ IDR++K+ AT +LR + + TT+ IL+LF++K + D+ + E Sbjct: 180 FNTEG-DILYLIIDRKKKIAATAMLRCIGFETTQDILNLFYKKTDEIVLDDAAFNDFDKE 238 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 + ++ D +DE Sbjct: 239 GVCT--------LINRIIFN-----------------------------------DVVDE 255 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 TGE+I AN + L +L +S ++I L + + I TL D T R AL Sbjct: 256 ETGEIILEANTVIDDKKLERLRESSVEKITVL--SKEEDNLLIHYTLAADKTKSREDALK 313 Query: 365 EIYR--MMRPGEPPTREAAESLFENLFFS-EDRYDLSAVGRMKFNRSLLRE--------- 412 +Y + E P + AE F+ LF + +YDL VGR + N + Sbjct: 314 AVYSVTHQQQEEAPNLQTAERYFDELFLNDPHKYDLGEVGRYRLNAKVYTAAILAKVKEV 373 Query: 413 ------------EIEGSGILSKDDIIDVMKKLIDIRNGKG--EVDDIDHLGNRRIRSVGE 458 +SK D + +++ ++ + NG +DDIDHLGNRR RSVGE Sbjct: 374 AERFDRVNEFKMPSVTQMTMSKTDFLAIIEYMVGLFNGDEGYTLDDIDHLGNRRTRSVGE 433 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTL-MPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 + Q VGL R+ R ++E LSL + P++++N + +S V+ FFG SQLSQFMDQ Sbjct: 434 LLAGQISVGLSRMSRVIRENLSLHSEEEQTTPRELVNTRMVSTVVQAFFGQSQLSQFMDQ 493 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ Sbjct: 494 MNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLINSLAS 553 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE------ 631 YA N +GF+ETPYR V D E + + + FVE Sbjct: 554 YAVVNHFGFIETPYRIVGLVEFKDAQGNKCYFPEEKWHFGIFKGFVHDPHLFVELELTQK 613 Query: 632 --DLVTC----RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 D V R + F D S DD + + Sbjct: 614 EIDTVRLNLDNRQRELFEGFVNKVFQLKDADGNVSYSKNG-----FALDDFDGTPDYVQV 668 Query: 686 QRQAVPTLRADKPLVGTGMERAVAV-------DSGVTAVAKRGGVVQYVDASRIVIKVNE 738 + + E + V D G V D S + + Sbjct: 669 GDVVEQIVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYVIVRDKSEYPHLMKQ 728 Query: 739 DE------------------MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 D M + ++ +N+ + M P+ R Sbjct: 729 DSIAIGDTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGSNM--QRQAVPLLRA 786 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 + G + AL V F D+ ++ VQ + + L + Sbjct: 787 EAPVVGTGLER-RAALDSGTVVRAKHDGKVTFVDARNIT---VQRGKMVNGVFEPLTGLG 842 Query: 841 RDTKLGPEEITAD---IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 + + ++ + S +++ IV +G V GD+L V+ +L Sbjct: 843 ENYEFLGKDPIDEYTLRKFERSNQDSCINQKPIVNVGDFVEVGDVLADGVSTDH-GELAL 901 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 + +L + +D+ + + FT +E+ + + + ++ Sbjct: 902 GKNILIGFLPWNGYNYEDAVIISEE-----LAIKDTFTSIHIEEYEMEVRDTKRGPEELT 956 Query: 958 KDL----SEELQILEAGLFSRIR------AVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 +++ + L+ L+ R+ +LV + + P +R L ++ Sbjct: 957 REIPNVGEDALRNLDENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEKAG 1016 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEA 1031 + L E ++ + Sbjct: 1017 DVRDSSLKAPPGMKGVVLETRIFS 1040 >UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Tax=cellular organisms RepID=RPOB_PHATR Length = 1389 Score = 638 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 337/1338 (25%), Positives = 547/1338 (40%), Gaps = 209/1338 (15%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF 80 + YL Q +S F++ L + +S +L +L F Sbjct: 198 YYSIKYLKQKQQNSTFYFLQSFK-----LYRVASKLLSSKSKQRVIQLFLKWLKLKNKSF 252 Query: 81 DVQECQIRGVTYSAPLRVKL--RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVI 138 E Q Y L L+ YE T K +++ + + + ++ Sbjct: 253 ---EFQDEKQIYLIKYFNFLLTSLMKYEILQSSLTTKFNEDKTILLSKF----TKSNAIL 305 Query: 139 NGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL----DFEFDPKDNL 194 N +++ I++ + +S L+ P WL +F F K Sbjct: 306 NLSDKQIINLSMIYNKLIINSQTLAQMELNSNLFLITKEPRE--WLTEMSNFLFLKKQIS 363 Query: 195 FVRIDRRRKLPATIILR-----ALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 + T + + + ++ L F K + ++ + + Sbjct: 364 KATFTLKSFQELTQLQNLKPAIYFSISLKEQLKYVFGKNKLTYKSDRHKYLKTKTQFLLY 423 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 +I+ N ++ TA I + + + + K K D E+ Sbjct: 424 RKDHEIKTNYNKKYDEKDLYTATVIPEYGSWIRIGFQRNTKINSYKYPLKSQED----EV 479 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 I + +L L + G +E + Y ++ L ++ L E Sbjct: 480 IIQLDKINQKPVLYLLKEMGLTDLEIYQNLEYADFFYFNKPLLINSKR-----LSEPLSR 534 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 G + +E + F Y L VGR+K N L + E ++ +DI + Sbjct: 535 FNLGLSYFKNISE---FSRIFDPTYYRLGRVGRLKINSRLNLKMSERLQTITYEDIFAIT 591 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP 489 KLI++ K DDIDHL NRR+RSVGE+ +N FR+G R+ R ++ + + D L+ Sbjct: 592 DKLINLTISKTVQDDIDHLKNRRVRSVGELLQNLFRIGFQRLGRKLRNQTNKIDSGQLLS 651 Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 +++NA ++EFFGSSQLSQ++DQ NPLS +TH+RR+S LGPGG R+R F VRD Sbjct: 652 FNIVNAS-----IREFFGSSQLSQYLDQTNPLSSLTHRRRVSGLGPGGFDRDRISFAVRD 706 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAI 609 +HP+HYGR+CPIETPEG N+GLI SL+ A+ N+ GFLETP+ +V +G V Sbjct: 707 IHPSHYGRICPIETPEGQNVGLIASLTTCARVNKSGFLETPFWRVINGKVV--------- 757 Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 G+ + D D+ ++ + + + Sbjct: 758 ----------------------------KTGQPVYLTADIEDFYKIAPADIATNKDNY-- 787 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 + + +P + T E S + V+ ++ + + Sbjct: 788 ---------------LTKNVIPVRYKQDFVNVTPSEVDFIAISTIQVVSVAASLIPFFEH 832 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 + M + Q P V G + D T Sbjct: 833 DDANRALMGSNMQRQSVP---------------LLLPQKPIVGTGL---ENQIAIDSGMT 874 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 +++ ++ + K + Sbjct: 875 LN------------------------------SYSNGVVSSVTANKIVVNDKTGKRLTYK 904 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 + + + ++ IV+ G +V G IL ++L+ + +L + Sbjct: 905 LQKYL---RSNQQTCINHRPIVWKGEQVKSGQILTD-GPAITSSELSLGQNVLIGYMPWQ 960 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE------- 962 + +D+ L ++ ++ VFT +E+ K ++ L++ K++ Sbjct: 961 GYNFEDAIL-----INERLVYDDVFTSIHIERYKIEIDRNSDTLERTTKNIPNLNPREIR 1015 Query: 963 ---ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD 1019 + I+ G F R +LV + ++LP + L + K + Sbjct: 1016 HLNDDGIVTVGTFVRPGDILVGKVISNNTSEQLPESKLLRAIFGAKAKGVKDNSYRMSDG 1075 Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 E E +R K+T + + V++A R+IQ GDK+AGRHGNKG+IS+I Sbjct: 1076 EYGRVIETVTFNRRTKLTYKFE-------KIYVFIAQIRKIQVGDKIAGRHGNKGIISRI 1128 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 +DMP+ +GTP+DI+LNPLGVPSRMN+GQ+ E LG+A + + + + Sbjct: 1129 LSRQDMPFLPDGTPLDILLNPLGVPSRMNVGQLYECLLGLAGDKLNARFKILPFDEMYGL 1188 Query: 1140 KLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL 1199 ++ + A + + Sbjct: 1189 EISRILINKKLRQASIAKNES--------------------------------------- 1209 Query: 1200 KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1259 L + G++ L DGRTG++FE PVTVG YMLKL HLVDDKMHAR+TG YSL+TQQPL Sbjct: 1210 WLFNPYAPGKMVLIDGRTGKEFENPVTVGNAYMLKLIHLVDDKMHARATGPYSLITQQPL 1269 Query: 1260 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 GKAQ GGQRFGEMEVWALE +GAA+TL+E+LT+KSDD+ GR + IV G + G+ Sbjct: 1270 RGKAQHGGQRFGEMEVWALEGFGAAFTLKELLTIKSDDMQGRNETLNAIVKGQQIPKFGI 1329 Query: 1320 PESFNVLLKEIRSLGINI 1337 PESF VLL E+RS+G+++ Sbjct: 1330 PESFKVLLHELRSIGLDM 1347 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 72/501 (14%), Positives = 177/501 (35%), Gaps = 30/501 (5%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQ 83 +P L++Q SF FI Q + L + + S + + Y L +P + + Sbjct: 7 LPDFLAMQRISFCWFITQGLTEELALFSRIQDF----SQNTEYVMFGEEYSLIKPSYSLL 62 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTER 143 + Y A L + + + + + + +PLMT + TF+ING ER Sbjct: 63 IARKYSGNYRAQLVIPIEVRNKVVNSIR------YHNQFPIITLPLMTTDATFIINGCER 116 Query: 144 VIVSQLHRSPGVFFDSDKGKTHSSG-KVLYNARIIPYRGSWLDFE-FDPKDNLFVRIDRR 201 VIVSQ+ RSPGV+F+ +K + + K + I R E F + +LF + Sbjct: 117 VIVSQIIRSPGVYFEKNKNQKTRNQFKKKLSTDINKLRSFIPSGEAFISEFDLFFPLPTS 176 Query: 202 RKLPATIILRAL-NYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 P + + ++ + I + + + +++ + R + ++ + Sbjct: 177 IYDPVKKKKKIIPHWQSNSIYYYSIKYLKQKQQNSTFYFLQSFKLYRVASKLLSSKSKQR 236 Query: 261 VY--VEKGRRITARHIRQLEKDDVKLIEVP----VEYIAGKVVAKDYIDESTGELICAAN 314 V K ++ + ++ + LI+ + +++ + + + Sbjct: 237 VIQLFLKWLKLKNKSFEFQDEKQIYLIKYFNFLLTSLMKYEILQSSLTTKFNEDKTILLS 296 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 + + LS + ++ + + +++ E M Sbjct: 297 KFTKSNAILNLSDKQIINLSMIYNKLIINSQTLAQMELNSNLFLITKEPREWLTEMSNFL 356 Query: 375 PPTREAAESLFENLFF-------SEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 ++ +++ F F + ++ + + + + + Sbjct: 357 FLKKQISKATFTLKSFQELTQLQNLKPAIYFSISLKEQLKYVFGKNKLTYKSDRHKYLKT 416 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM--AENQFRVGLVRVER--AVKERLSLGD 483 + L+ ++ + + + + + + + + R+G R + + K L + Sbjct: 417 KTQFLLYRKDHEIKTNYNKKYDEKDLYTATVIPEYGSWIRIGFQRNTKINSYKYPLKSQE 476 Query: 484 LDTLMPQDMINAKPISAAVKE 504 + ++ D IN KP+ +KE Sbjct: 477 DEVIIQLDKINQKPVLYLLKE 497 >UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax=Chlorella vulgaris RepID=RPOB_CHLVU Length = 1301 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 321/1249 (25%), Positives = 534/1249 (42%), Gaps = 148/1249 (11%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 L+ F P+ F + D +K A ++ + + I K R L + ++P Sbjct: 78 LEIRFFPEGIQFRKPDFTQKQ-AVVLGKIYG-SAVYIPVGIHSKKSSTFRIEWLFVGILP 135 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + F + +V + + R + + + + + K Sbjct: 136 --IMTRQGHFVVNGVSRVVLHQMVRNPGIYTLPI---HPRTKIGTLRIVPEKGGWIHITV 190 Query: 304 ESTGELI-CAANMELSLDLLAKLSQSGHKRIETLFTNDLD-----------------HGP 345 + + ++ + LL L G + + H Sbjct: 191 DKKHRVWFLTRSLRRKVSLLIFLQAVGIPFHDIFLRLEHSKILQNSFVAELGEGSARHDD 250 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPP-------TREAAESLFENLFFSEDRYDLS 398 + + A +Y + P + A F + +++D+ L Sbjct: 251 VLERAGLYAHPATQEEAWQYLYSHFKEYSPYAHKNLAAKEQTAREFFYSTLWNKDKLILG 310 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 +GR +F + E + L+++D+++ + L+ + + K VD+ID L +RIR E Sbjct: 311 HIGRQQFREKIGSIEPLENTSLTREDLLEATQALLSLMHKKRVVDEIDSLTQKRIRGCDE 370 Query: 459 MAENQFRVGLVRVERAVKERLSL-----------GDLDTLMPQD-MINAKPISAAVKEFF 506 G+ E + +++ +L Q+ + +K +S + K FF Sbjct: 371 FLLEHLATGMKEFELFFRRKVTFLPATKSITGAENPFRSLWRQNKAVFSKTVSKSWKRFF 430 Query: 507 GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 566 S L QFMDQ N L+E THKRR++ LGPGG++ ++ ++R +HPT+YGR+CPIETPEG Sbjct: 431 TSGTLGQFMDQTNSLAETTHKRRLTVLGPGGISGKQTTIQIRGIHPTYYGRLCPIETPEG 490 Query: 567 PNIGLINSLSVYAQTNEYG--FLETPYRKVTDGVVTDEIHY--LSAIEEGNYVIAQANSN 622 N GL+NS +V + ++YG L TP+ +V G V + +S +E + A A+ Sbjct: 491 KNAGLVNSFTVLSVLSKYGARTLTTPFYQVYKGQVQKTLPPLRVSPRQEYKLIEAPADIQ 550 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 L + + R + ++ V Q +SV SLIPFLEH+DANRALMG Sbjct: 551 LTAWNVLPKTHLPVRKELNFHSDVATRITTQSVGILQNISVATSLIPFLEHNDANRALMG 610 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI---KVNED 739 +NMQRQAVP L+ PLVGTG+E V D + A + G + V +++I + + + Sbjct: 611 SNMQRQAVPLLKPQAPLVGTGLESRVIGDVNHSMQASKTGFITKVSSTKIQVLSPRKTKA 670 Query: 740 EMY---------------------PGEAGIDIYNLTK--YTRSN--QNTCINQMPCVSLG 774 ++ + K +SN Q Sbjct: 671 QVSVFSHVLFSLNKKKKKSLLNSEKQSFSKNGIFFIKTLQQKSNLKNIFFSAQKALYQEN 730 Query: 775 EPVERGDVLADGPSTDLGELALGQNM--RVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 + + +L QN ++ F+ + ++ ++ + ++ Sbjct: 731 SSFDLKFEAQNRLFIPKMTFSLAQNFSRKIPFLSFFLKKKKERPRNPKKF-FRSSDSFVN 789 Query: 833 IQELACVSRDTKLGPEEIT---ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 + S D + EIT + I + E I+ V GD L+ Sbjct: 790 WKHKKLHSEDFRKNKVEITTTYSLIQYQRTNQSTCFSERPILPENEWVEKGD-LLADGAS 848 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE 949 + +L+ + +L A + + +D+ L ++D ++FT ++ A++ Sbjct: 849 SSQGKLSIGQNVLVAYLPWEGYNFEDAILISQ-----RLVDQEIFTSLHMDHYDIAVQNT 903 Query: 950 EMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKL------- 992 + L++ + ++ L++ I + + G K+ L Sbjct: 904 QYGLERITNLIPLKISDSTRDIYKMGNLDSRGLVEIGSWVEPGDYLVGKMSPLDPKSPPL 963 Query: 993 --PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 P ++ + L E+ + L ++ + + V Sbjct: 964 QSPHEKLYNVILQREKTSFRNTSLRVPKGVQGFVLGVQILPSQEPDVAAL-AEKDEILRV 1022 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 +V L +R+IQ GDKMAGRHGNKG++S I P +DMPY +GTPVDIVLNPLGVPSRMN+G Sbjct: 1023 RVLLLQRRKIQVGDKMAGRHGNKGIVSLILPRQDMPYLPDGTPVDIVLNPLGVPSRMNVG 1082 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 QILE LG+A + ++ L +Q GA+ + + S + Sbjct: 1083 QILECLLGLAGHFLHERYTTYLFDEQY--------------GAEASRSLVYSKLYQASLK 1128 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 + + G+IR++DGRTG F++P+T GY Sbjct: 1129 TRNP-------------------------WVFEPHHPGKIRVFDGRTGLTFDQPITAGYA 1163 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y+LKL HLVDDK+HAR TG YS +TQQP+ G+A+ GGQR GEMEVWAL+AYGAA+TL E Sbjct: 1164 YILKLVHLVDDKIHARPTGPYSAITQQPVKGRARNGGQRLGEMEVWALQAYGAAHTLHEF 1223 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TVKSDD++GR + NI G PESF ++L+E+++L N ++ Sbjct: 1224 FTVKSDDLDGRQQAVLNIYANKPVTT-GNPESFKLILRELQALCFNFQV 1271 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 129/361 (35%), Gaps = 29/361 (8%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPV 79 +++P L+ +Q SF FIE YGL+ AF+ + + E+++ + +P Sbjct: 40 MEIPNLIDVQRQSFYSFIE------YGLKEAFQKPLRFSTTKHDLEIRFFPEGIQFRKPD 93 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 F ++ + G Y + + + + + + + +++G +P+MT G FV+N Sbjct: 94 FTQKQAVVLGKIYGSAVYIPVGI-------HSKKSSTFRIEWLFVGILPIMTRQGHFVVN 146 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV-RI 198 G RV++ Q+ R+PG++ + RI+P +G W+ D K ++ Sbjct: 147 GVSRVVLHQMVRNPGIY-----TLPIHPRTKIGTLRIVPEKGGWIHITVDKKHRVWFLTR 201 Query: 199 DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 RRK+ I L+A+ I F ++ + + E + Sbjct: 202 SLRRKVSLLIFLQAVGIPFHDI----FLRLEHSKILQNSFVAELGEGSARHDDVLERAGL 257 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + + E + + + + ++ + Sbjct: 258 YAHPATQEEAWQYLYSHFKEYSPYAHKNLAAKEQTAREFFYSTLWNKDKLILGHIGRQQF 317 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 + + + + + + L+ + + D + +L + + +R + Sbjct: 318 REKIGSIEPLENTSLT--REDLLEATQALLSLMHKKRVVDEIDSLTQ--KRIRGCDEFLL 373 Query: 379 E 379 E Sbjct: 374 E 374 >UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax=Mycoplasma gallisepticum RepID=RPOB_MYCGA Length = 1390 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 344/1104 (31%), Positives = 560/1104 (50%), Gaps = 109/1104 (9%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 K +R+D+ K + L IQ++++++F+E++ LE S FPI+S +G Sbjct: 12 YSPKVVRRDYSKVHNKYNPLNLPGIQVNAYKQFLEKE------LEEIIGSYFPIKSPNGK 65 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYER---EAPEGTVKDIKEQEV 122 +++ ++ +P +E TY A L V L LV ++ + K + + Sbjct: 66 YSVEFHGMKILDPQITKEEASAESKTYDASLYVNLSLVNHQTGTVKKISKKSAKSKAEGI 125 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL----YNARIIP 178 Y +IPLMT+NG F++NG E+ +V+Q+ RSPG + + S+ + Y + P Sbjct: 126 YFADIPLMTENGAFIVNGIEKFVVAQIVRSPGAYILNKSQVKLSNSRKRNQEGYICEVFP 185 Query: 179 YRGSWLDFEFDPKDNLFVRIDR------RRKLPATIILRALNYTTEQILDLFFEK----- 227 +G+ + F + + R + T +L+A + +I ++F Sbjct: 186 SKGTLMLFYIAENKDFVQAVVRDVGGESAKVFSITTLLKAFGLSEIKIKEIFNNNDYILR 245 Query: 228 --VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 + ++ E +L + S I + +++ + +L ++ +L+ Sbjct: 246 SLESEFYNEKQILNEADIAQLIRDIESDRISKVKSLPIDQKWKNLVLDWYKLNQEKQELL 305 Query: 286 EVPV-EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG-------HKRIETLF 337 + + + A + +L L Sbjct: 306 NSSNPNPTKIESLNTHIGVVLRKLICEKAAKHVIQELSISTRSLDNVSQKEEISYQSILL 365 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRM---------------------------- 369 + Y + +L +Y+ Sbjct: 366 QHFFQKKRYDLSSAGRHKFVRKLRVSERLYQRTIAQDIKDLDGNVVIKQGTLMLKEQLDL 425 Query: 370 ------------MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE-EIEG 416 ++ + E + + E + ++ R + + + + E Sbjct: 426 FKRLSKEKRLDIIKQIDFINPELNTQFTDVNTYEEVQIYVNNDLRNETTQIIGIDGSNES 485 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 L+ D+I ++ ++++ G DDIDHLGN+R++ + E+ +++ + G++R+E+ +K Sbjct: 486 IETLTLADLISIVSYIVNLPFNIGLYDDIDHLGNKRLKLINELLKSKVQTGMMRIEKYIK 545 Query: 477 ERLSLGDLDT----------------------LMPQDMINAKPISAAVKEFFGSSQLSQF 514 ++L D + L + +IN KP +K+FF + QL+QF Sbjct: 546 DKLQTADGNNKLADQDAENDPDSDLGTKSSNDLTVKSVINPKPFQIVIKDFFNTHQLTQF 605 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 +DQ NPLSE+T+KRRISA+GPGG++RE ++RDVH +HYGR+CPIETPEG NIGLI S Sbjct: 606 LDQQNPLSELTNKRRISAMGPGGISREDPNLDIRDVHYSHYGRICPIETPEGMNIGLIMS 665 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD--EEGHFVED 632 L+ YA ++ GFL TPY KV +G +TD++ +L+A+ E Y+IA+A+S +D ++G + Sbjct: 666 LAFYATIDKNGFLMTPYLKVENGKITDKVEHLTALREDEYIIAEASSYMDVAKDGTINNE 725 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 + R + L+ QVDY+DVS +QVVSV ASLIPFLE+DD++RALMGANMQRQA P Sbjct: 726 KIIARYRSSQDLYDPKQVDYIDVSPKQVVSVAASLIPFLENDDSSRALMGANMQRQATPL 785 Query: 693 LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN 752 L+ PLVGTG+E +A DSG+ AK G V YVDAS+I +K +++ YN Sbjct: 786 LKPYSPLVGTGVEYKIAQDSGMLVTAKNPGTVTYVDASKITVKGEDNKSTD-------YN 838 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 L K+ +SN+NTC NQ P V++G+ +E LADGPS GELALGQN+ V F W+GYN+ Sbjct: 839 LLKFVKSNKNTCYNQSPIVAVGDKIETNQALADGPSMKNGELALGQNVLVGFTTWSGYNY 898 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 ED++++S+R+ ++D +++IHI E TK G EEIT DIPN+ E+A LDE G++ Sbjct: 899 EDAVIISDRLFKDDVYSSIHIDEYTIECLRTKNGDEEITRDIPNISESAKRYLDEEGVIM 958 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 +GAEV GDILVGK +PKG+ +LTPEEKL++AI G+K V++SSL+VPNG G V ++ Sbjct: 959 VGAEVKEGDILVGKTSPKGQVELTPEEKLIQAILGDKVKQVRESSLKVPNGGDGIVAGIK 1018 Query: 933 VFT-RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 F+ +G E + LE+ ++ + Q +K + G I ++ + D Sbjct: 1019 RFSIANGDELEDDVLELVKVYVVQKRKIQIGDKVAGRHGNKGIISKIVAQEDMPH-LEDG 1077 Query: 992 LPRDRWLE-LGLTDEEKQNQLEQL 1014 P D L LG+ Q+ +L Sbjct: 1078 TPLDILLNPLGVPSRMNIGQIFEL 1101 >UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis solitaria RepID=C7BEC3_9CHLO Length = 1115 Score = 628 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 301/1169 (25%), Positives = 506/1169 (43%), Gaps = 159/1169 (13%) Query: 207 TIILRALNYTTE-QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 T IL+A Y + I +I+ + + P L + F I + ++ + + Sbjct: 59 TAILKAKTYACKLYIPVQLVNNTSKKIKTQWVLLTNFP--LMTKRGHFIINGSPRIIINQ 116 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 R + +++ K + + I+ + + + + +L L Sbjct: 117 IIRSPGIYYQEVFDKKKKR-KYYADLISFRGTWLRLEIDKKKAIWARMKKTPKISILIFL 175 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLR-VDPTNDRLSALVEIYRMMRPGEPPTR---EAA 381 G L + ++H ++ + + AL +Y + P + T Sbjct: 176 QAMGLTN--QLIFHSIEHSDFLKNSFSDEENLTTTEEALKLLYSEINPKKEETSIKSSMG 233 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 + F + YDLS +GR + N L + L+ DI+ + LI + +G G+ Sbjct: 234 QKFLFRKFMNPRTYDLSELGRSRLNEKLGLSISKSKTTLTPHDILYAINYLIKLEHGFGK 293 Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAA 501 +DDIDHL NRR+R+ GE+ +NQ +GL+R+E+ ++E+L + ++ Q++I K I+ A Sbjct: 294 IDDIDHLKNRRVRASGEILQNQISLGLIRLEKLIREKLKK-NRKNIILQNLITTKAINGA 352 Query: 502 VKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 ++EFFGSSQLSQFMDQ NPL+EITHKRR++++GP G++RE AG +R +HPTHYGR+CPI Sbjct: 353 LREFFGSSQLSQFMDQTNPLAEITHKRRLTSIGPNGVSRETAGMALRGIHPTHYGRICPI 412 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS 621 ETPEGPN GL+NS++ YA+ N GFLETP+ K Sbjct: 413 ETPEGPNAGLVNSITSYAKINSKGFLETPFYKTFK------------------------- 447 Query: 622 NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 G + L E ++ + +S+ S F Sbjct: 448 -----GQIQKKLKPLFFSAE------EEETKILISSDLNSS------KFYFLPKKKIPTR 490 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 +Q + S + ++ ++ +++ + + M Sbjct: 491 FGTETQQTKKDQVEYSAI------------SQIQMISIATSLIPFLEHNDANRSLMGSNM 538 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 L K R T + G + D T G+ + Sbjct: 539 QRQAV-----PLIKPERPVVGTGL-------EGRIISDSDHALQTQFTGYISYVSGKKII 586 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFT-----------TIHIQELACVSRDTKLGPEEI 850 V + ++ L ++ + F+ + + + + + L E I Sbjct: 587 V----YTIKKKKNLSLNLQKSTKNSFFSEYLFPKKLKKNSTNKIKKNPLIKRNTLFIEII 642 Query: 851 TADIPN--------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 I + L + G + D+L + ++ + +L Sbjct: 643 KNSIKKNEILLHTFQRSNQETLLTHYASICEGNWIQKNDLLADSSCSL-KGEIALGKNIL 701 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS- 961 A + + +D+ L ++ ++ ++T +E+ + + + L++ L Sbjct: 702 IAYMPWEGYNFEDAVL-----INERLVYEDIYTSIHIERFELEIRDTKFGLEKITNKLPE 756 Query: 962 ---------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 +E I + G + +L+ +K +P ++ L + + + Sbjct: 757 VPFSQLLHLDERGIAKIGSWVEEGTILIGKITPIKKKSLIPHEKLLYDIIGKKTPTTRDS 816 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 L ++ + + PG V +Y+A KR+IQ GDK++GRHGN Sbjct: 817 SLRAPKGLTGRIIHVEILETKNLPPESLFEGPG---RVHIYIAEKRKIQVGDKISGRHGN 873 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KG+ISKI P +DMP+ +GTPVD+VLNPLGVPSRMN+GQILE LG+A + + Sbjct: 874 KGIISKILPRQDMPFLPDGTPVDMVLNPLGVPSRMNVGQILECLLGLAGIFLNQQYKITP 933 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 + G + + + S + + + Sbjct: 934 FDE--------------KYGPEASRSLVFSKLYEARLKTGQK------------------ 961 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 L + G+I+L+DGR G+ F++ T+G Y+LKL HLVDDK+HARSTG YS Sbjct: 962 -------WLFNPNFPGKIQLFDGRNGKCFDQHTTIGQAYILKLVHLVDDKIHARSTGPYS 1014 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGN 1312 LVTQQPL G+++ GGQR GEMEVWALE +G+AY LQE++T+KSDD GR ++ I+ Sbjct: 1015 LVTQQPLRGRSKHGGQRLGEMEVWALEGFGSAYILQELITIKSDDTKGRHQVINAILKNK 1074 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIELED 1341 G PE+F VL+KE++SL ++I + Sbjct: 1075 SIS-LGTPEAFKVLIKELQSLCLDIIVYT 1102 Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 73/373 (19%), Positives = 133/373 (35%), Gaps = 21/373 (5%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPV 79 + +P + IQ +SF +++ GL ++ PI + N EL + Y+L P Sbjct: 1 MYLPDFIEIQRNSFNALLKK------GLIKEIKNRSPITNIKKNIELFFYPELYQLNPPN 54 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 F + ++ TY+ L + ++LV T K IK Q V + PLMT G F+IN Sbjct: 55 FTNKTAILKAKTYACKLYIPVQLVNN-------TSKKIKTQWVLLTNFPLMTKRGHFIIN 107 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 G+ R+I++Q+ RSPG+++ K K Y A +I +RG+WL E D K ++ R+ Sbjct: 108 GSPRIIINQIIRSPGIYYQEVFDKK---KKRKYYADLISFRGTWLRLEIDKKKAIWARMK 164 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIR-DNKLQMELVPERLRGETASFDIEAN 258 + K+ I L+A+ T + I + ++ + E L+ +I Sbjct: 165 KTPKISILIFLQAMGLTNQLIFHSIEHSDFLKNSFSDEENLTTTEEALKL--LYSEINPK 222 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + K R+ + + + T ++ Sbjct: 223 KEETSIKSSMGQKFLFRKFMNPRTYDLSELGRSRLNEKLGLSISKSKTTLTPHDILYAIN 282 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 + + I+ L + I + + E + R Sbjct: 283 YLIKLEHGFGKIDDIDHLKNRRVRASGEILQNQISLGLIRLEKLIREKLKKNRKNIILQN 342 Query: 379 EAAESLFENLFFS 391 Sbjct: 343 LITTKAINGALRE 355 >UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax=Mycoplasma penetrans RepID=RPOB_MYCPE Length = 1375 Score = 626 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 373/1112 (33%), Positives = 575/1112 (51%), Gaps = 94/1112 (8%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 K +R+D+ K + + P LL++Q ++F KFI+ + LE +S+FPI+S G Sbjct: 12 SKYVLRRDYSKIEKNFNEPNLLNLQKNAFHKFIDTE------LEGTIKSIFPIKSIGGRY 65 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE-----QE 121 L+Y+ +L +P +E + G TY PL V L +V E + T K K Sbjct: 66 SLEYIGMKLEKPKRSEKEARNEGKTYDRPLYVDLAIVDNESGEVKKTTKSSKNKASNTDG 125 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL----YNARII 177 ++ IP++T+ GTF++NG E+ ++SQ+ RSPG + + S+ + Y I+ Sbjct: 126 IFFASIPMITEKGTFIVNGIEKFVISQIVRSPGAYILTKSQIKLSNSRKRIQEGYICEIL 185 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRR-------KLPATIILRALNYTTEQILDLFFEKVIF 230 P +G+ L F F ++ F+++ R +P T L+AL E+IL++F Sbjct: 186 PAKGT-LFFIFMAENKDFIQVMFRDAIGESTHTIPITAFLKALGLNKEEILNIFANHKSI 244 Query: 231 ------EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 EI + K E + + K R + ++ + + + Sbjct: 245 KNSLDNEIYNEKDVFETDELINLRKNLNSSDSNRSYGVDTKLRELFKKYSSLKSQLEAEG 304 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + +V+ +++ +L+ ++ + +++ N Sbjct: 305 KNAEKQKELNEVINNIISEKAAKDLVINLSISTKNIDSKFRLSNKETTYQSIIYNHFFSN 364 Query: 345 PYI-----------SETLRVDPTNDRLSA--LVEIYRM-------------MRPGEPPTR 378 + + R+ A L +I + + T+ Sbjct: 365 KSFDLSKAGRFKMARKMRLSERLYQRVLAEDLKDINGKVVIKKNTLIQKHELDTIKQLTK 424 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMK-------------FNRSLLREEIEGSGILSKDDI 425 E + N+ E ++ V + + F + + LS DI Sbjct: 425 EGKLGIVHNVNLDERISKMANVVKYEKINVYQDNDSQDEFIPIIGTDTSLDKPTLSISDI 484 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL- 484 + + +I++ G DDIDHLGN+R++ + E+ + + + GLVR+E+ + ++L++ D Sbjct: 485 LSITSYVINLDYDIGFYDDIDHLGNKRLKLIDELLKTRAQAGLVRIEKFINDKLAIADGA 544 Query: 485 -------------DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 +L + +IN KP + KEFF S QL+QF+DQ NPL+E+T+KRRIS Sbjct: 545 NKSQEQSEEQEPKKSLTVKSIINTKPFQISFKEFFNSHQLTQFLDQQNPLAELTNKRRIS 604 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 A+GPGG++RE ++RDVH +HYG++CPIETPEG NIGLI SL+ YA T+E GFL TPY Sbjct: 605 AMGPGGISREDPNLDIRDVHYSHYGKICPIETPEGMNIGLIMSLATYASTDENGFLITPY 664 Query: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 R V +GV+TDEI +L+A+ E Y+IA +N N+++ F ED V CR + F VD Sbjct: 665 RIVKNGVITDEIRWLTALSEDEYIIACSNLNVEKNK-FKEDKVLCRYRSSWEFFDVKDVD 723 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 ++D+S +QVVS+ AS IPFLE+DDANRALMGANMQRQA P + P+VGTG E +A D Sbjct: 724 FIDISPKQVVSIAASSIPFLENDDANRALMGANMQRQATPLISPIAPIVGTGNEYKIAHD 783 Query: 712 SGV--TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 SG+ ++ G V YVD I IK +E +Y LTK+ +SNQNTC NQ+P Sbjct: 784 SGMAAVYDGEKDGTVSYVDGGTIKIKSGSEEK--------VYELTKFNKSNQNTCNNQVP 835 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 VS+GE V +G +ADGP+ GELALGQN+ VAF W+GYN+ED+I++S+R+ ED FT Sbjct: 836 IVSVGEKVTKGTTIADGPAMSNGELALGQNVLVAFTTWSGYNYEDAIILSKRLFMEDIFT 895 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 +IHI E + TK G EEIT DIPNV E++ LD+ GI+ +GAEV GD+LVGK++P Sbjct: 896 SIHIVEYSVDCLKTKNGDEEITRDIPNVSESSKKYLDDEGIIMVGAEVKEGDVLVGKISP 955 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDKRALEI 948 KG+ +LT EEKLL+AIFG+K+ + K++SL+VP+G GTV V+ F D E + +E Sbjct: 956 KGQVELTSEEKLLQAIFGDKSKNHKETSLKVPHGGEGTVAMVKRFKVEDDYELNADVIEQ 1015 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 ++ + Q +K + G I ++ + + LG+ Sbjct: 1016 IKVYVVQKRKIQIGDKMAGRHGNKGIISKIVPVEDMPHLEDGTTIDIMLNPLGVPSRMNI 1075 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 Q+ +L K K LE K D Sbjct: 1076 GQILELHLGLAMKKLTLSKVLELYYDKKPASD 1107 >UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4530 Tax=cellular organisms RepID=RPB2_YEAST Length = 1224 Score = 610 bits (1573), Expect = e-172, Method: Composition-based stats. Identities = 221/1394 (15%), Positives = 438/1394 (31%), Gaps = 267/1394 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY------GLEAAFRSVFPIQSYSGNS 66 + L+S QLDSF +F++ + LE + + S Sbjct: 29 DSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKY 88 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 E+ + K+ + +G + QE + Sbjct: 89 EISFG---------------------------KIYVTKPMVNESDGVTHALYPQEARLRN 121 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 + T + ++ +R + + ++ ++ Sbjct: 122 L---TYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESE--------------------- 157 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ------ILDLFFEKVIFEIRDNKLQME 240 D ++ V I R LP + + + + + F+ + I + ++ Sbjct: 158 --DDSESGKVFIGR---LPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVL 212 Query: 241 LVPERLRGETASFDIEANGKVY--VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + ER G +A V + R + R + VKL Sbjct: 213 IAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKAT 272 Query: 299 KDYI--DESTGELICAANMELSLDLLAKL-SQSGHKRIETLFTNDLDHGPYISETLRVDP 355 YI D + A + ++L + ++ + ++ G I Sbjct: 273 LPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVI-------- 324 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 DR +AL I R E + + L + ++ E Sbjct: 325 -QDRETALDFIGRR----GTALGIKKEKRIQYAKDILQKEFLPHITQL-----------E 368 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 G + ++ +L+ + + DD DH G +R+ G + F+ ++ + + Sbjct: 369 GFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDI 428 Query: 476 KERLSLGDLD--TLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQNNP 520 + + + INAK I++ +K + SQ +++ Sbjct: 429 FRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTY 488 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 S ++H RR + + R+ + R +H TH+G VCP ETPEG GL+ +LS+ + Sbjct: 489 SSTLSHLRRTNT----PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSC 544 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTC 636 + G P + + + + N +E L T Sbjct: 545 ISV-GTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTL 603 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM----QRQAVPT 692 R KG+ + + + ++ + + L + + +L + A Sbjct: 604 RRKGDIN-PEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLM 662 Query: 693 LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR---IVIKVNEDEMYPGEAGID 749 + + G G E V+ + G+V+Y+DA I+I + +++ P EA + Sbjct: 663 ATEYQDIEG-GFE---DVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEE 718 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 + ++ + + PS LG + + +P+ Sbjct: 719 -----------NDLDVDPAKRIRVSHHATTFTHCEIHPSMILG-------VAASIIPFPD 760 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 +N S + + + + + R + P A+ L Sbjct: 761 HNQ--SPRNTYQSAMGKQAMGVFLTNY--NVRMDTMANILYYPQKPLGTTRAMEYLKFRE 816 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 + + + AI + +DS + + + + Sbjct: 817 LPA-------------------------GQNAIVAIACYSGYNQEDSMIMNQSSIDRGLF 851 Query: 930 DVQVFTRDGVEKDKRALEI----EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 F ++ K + I E+ Q + L+ + V Sbjct: 852 RSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVI 911 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 K + D +EE + +++ + + +T D Sbjct: 912 IGKTTPISPD--------EEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQD---- 959 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 LK VKV + + Q GDK A RHG KG I EDMP+ G D+++NP +PS Sbjct: 960 GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPS 1019 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM + ++E L A G++ +A V + + ++ + Sbjct: 1020 RMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNG---- 1075 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 +G+ + + Sbjct: 1076 ----------------------------------------HTGKKLM----------AQI 1085 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G Y +L H+VDDK+HAR+ G ++T+QP+ G+++ GG RFGEME + A+GAA Sbjct: 1086 FFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAS 1145 Query: 1286 TLQEMLTVKSD----DVNGRTKM-------------YKNIVDGNHQMEPGMPESFNVLLK 1328 L+E L SD + G + K + + +P + +L + Sbjct: 1146 FLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQ 1205 Query: 1329 EIRSLGINIELEDE 1342 E+ ++ I L + Sbjct: 1206 ELMAMNITPRLYTD 1219 >UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular organisms RepID=B2IM40_STRPS Length = 824 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 327/668 (48%), Positives = 435/668 (65%), Gaps = 21/668 (3%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++ DI+ M +++ G G VDDIDHLGNRRIR+VGE+ NQ R+GL R+ER V+ER+ Sbjct: 1 MTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNVRERM 60 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 S+ D + L PQ +IN +P++AAVKEFFGSSQLSQFMDQ+NPLSE++HKRR+SALGPGGLT Sbjct: 61 SVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLT 120 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD--G 597 R+RAG+EVRDVH THYGR+CPIETPEGPNIGLIN+LS Y N+YGF++TPYRKV G Sbjct: 121 RDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRETG 180 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VVT+EI +L+A EE Y +AQANS L+E+G F E +V R +G + + + VDYMDVS Sbjct: 181 VVTNEIVWLTADEEDEYTVAQANSRLNEDGTFAEKIVMGRHQGVNQEYPANIVDYMDVSP 240 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +QVV+V + IPFLE+DD+NRALMGANMQRQAVP + P VGTGME A DSG + Sbjct: 241 KQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPQAPYVGTGMEYQAAHDSGAAVI 300 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A+ G V Y DA ++ ++ + + D+Y++ K+ RSN T NQ V +G+ V Sbjct: 301 AQYDGKVTYADADKVEVRREDGSL-------DVYHIQKFRRSNSGTAYNQRTLVKVGDVV 353 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 E+GD +ADGPS + GE+ALGQN VA+M W GYNFED++++SER+V++D +T++H++E Sbjct: 354 EKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKDDVYTSVHLEEYE 413 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 +RDTKLGPEEIT +IPNVGE AL LDE GI+ IGAEV GDILVGKVTPKGE L+ Sbjct: 414 SETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSA 473 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQA 956 EE+LL AIFG+K+ +V+D+SLRVP+G G V DV++FTR +G E + + + Q Sbjct: 474 EERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRVNGDELQSGVNMLVRVYIAQK 533 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAE 1016 +K + G + ++ + D P D L L + N + + Sbjct: 534 RKIKVGDKMAGRHGNKGVVSRIVPVEDMPY-LPDGTPVDIMLN-PLGVPSRMNIGQVMEL 591 Query: 1017 QYDELKHEFEKKLEAKRRKITQGDDL-----APGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 + +DL G+ K L R G+ R Sbjct: 592 HLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRT---GEPFDNRVS 648 Query: 1072 NKGVISKI 1079 GV+ I Sbjct: 649 -VGVMYMI 655 >UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4MYU5_THEPA Length = 1244 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 209/1414 (14%), Positives = 447/1414 (31%), Gaps = 270/1414 (19%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGL--EAAFRSVFPIQS 61 Y K I+ + P + + + ++S+ F+ + + R Sbjct: 24 IYEPVKEIKDKWKILPCYMGMRGIARQHINSYNNFVLHEIKDIINAPSNKVLR-----TD 78 Query: 62 YSGNSELQYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 + L++V ++G+P Q C+IR TYSAP+ V + Sbjct: 79 LYPSLSLEFVDIKIGKPFFTDHSKHVFKLTPQLCRIRDFTYSAPILVTIDY--------F 130 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 +++ + +G IP+M + ++ + H S G+ + K+ + + Sbjct: 131 RDYTFTRKENLEIGRIPVMLRSCICFLSSDSE--SNSDHDSSGLPEYNSSKKSMKNNFDI 188 Query: 172 YNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE 231 + R S+ Y + + + ++ + Sbjct: 189 PDGLSKEDRESF-------------------------------YKSYMLDECPYDPGGYF 217 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 I ++ L+ E+L +++ + A + + V Sbjct: 218 IIKGVEKVILMQEQLSKSRIIVEMDVKKNIC--------ATVTSATAESKSRTAVVYKNS 269 Query: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD-------HG 344 + D ++ A +E +++ +S S + Sbjct: 270 QLYLRINSFTDDVPLCIVLKAMGIETDHEIIQLISNSPTTFKNSNNLTTPSSNLPNGLDY 329 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPG----EPPTREAAESLFENLFFSEDRYDLSAV 400 L + N RL AL+ I + +RP + + ED +D+ + Sbjct: 330 ITFLNDLYNEDINSRLDALMYIGKKIRPRVLGKGFFSSNKDRAPKSKQMILEDTHDI--L 387 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 R+ + +++ + SG + + + +++++ N +DD DH GN+R+ G+M Sbjct: 388 SRVLLSHIPMKDCRDFSGKIK--TLSLMAHRVLNVVNNVEPLDDKDHYGNKRLELAGQMI 445 Query: 461 ENQFRVGLVRVERAVKERLSL---------------GDLDTLMPQDMINAKPISAAVKEF 505 F + +K+ + + + ++ I+ ++ Sbjct: 446 SILFEDFYKKFLSNMKKSIESILVKYLEANPNPAKGENSNFPDIFGLMPTDIITNGMQNA 505 Query: 506 FGSSQL--SQF-MDQNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGR 557 + +F M+++ ++ IS++G + R R + P+ +G Sbjct: 506 IATGNWNIKRFRMEKSGVSQVLSRLSYISSIGMMTKTDSQFEKGRKVSGPRALQPSQFGI 565 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI- 616 +CP +TPEG + GL+ +LS+ + + + I LS+ + N Sbjct: 566 LCPCDTPEGESCGLVKNLSLMTHVT-SDVPTPVLETLLFTLGVEPIDTLSSHDMFNPWKG 624 Query: 617 -------------AQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 N L V ++ R +G ++F + + Sbjct: 625 TSEKCDNLLNARLVLLNGILLGIHRNAKFLVNSIIKLRRRGLINMFVSVYENSQQ-NQVH 683 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 + S G L L + + + +Q V + L G+ + V+ + Sbjct: 684 ISSDGGRLCRPLIVVQNSVPRLTDELVQQLVENKIKMEYLFNNGILEWIDVNEENNLLIV 743 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 I E+ P + L + N Q P Sbjct: 744 M-------REKDITNLTTHLEISPMSILGVVAGLIPFPNHN------QSPR--------- 781 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 + +G+ ++G + +N + D+++ H+ Sbjct: 782 -----NTYQCAMGKQSIGS------IGYNQFQRCDTVV--------------HLMNYTQQ 816 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 P V + ++ + + Sbjct: 817 ---------------PLVTTKTIQLVNFDKLPA-------------------------GQ 836 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 + A+ + +++D+ + + +T + + + + K Sbjct: 837 NAIVAVMSYQGYEIEDAIILNKASIDRGFAR--CYTLRRLTCEITSGNATSLNGFNPSKS 894 Query: 960 LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD 1019 +++ + V + + K T+ + ++ Sbjct: 895 QNKDSDSNNEFVIGVGEQVSPGQVLISTKAPPTDFT-------TNGSMNGKGTDKNQKTG 947 Query: 1020 ELKHEFEKKLEAKRR--KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 K K+ K+ + R + GDK + RHG KGV+ Sbjct: 948 NDDKYIVNKYNLNTGGCIDRVILTENYNGNKMYKIMVRQSRPPEIGDKFSSRHGQKGVVG 1007 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 I EDMP+ E+G D+++NP G PSRM +G++LE ++ G+ +++ Sbjct: 1008 LIAEHEDMPFTESGIVPDLIMNPHGFPSRMTVGKLLELVASKSSVFSGNFVDSTPFSNSY 1067 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 L + + K ++I + Sbjct: 1068 SDNLCNDLNNSG---------------------------------------SNKMSDICD 1088 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 +L G+ LY G +G + +G +Y +L H+V DK+HAR G +T+Q Sbjct: 1089 ILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARGRGPRQPITRQ 1148 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKMY-----KNI 1308 P G+++ GG R GEME L AYG++ L E L + SD +V Sbjct: 1149 PTEGRSRDGGLRLGEMERDCLIAYGSSNLLVERLMLSSDVFNIEVCSSCGFMGYNNFCKF 1208 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 N + +P + +L +E++++ I L + Sbjct: 1209 CQNNSLAQVSLPYACKLLFQELQAMNIRPSLIVK 1242 >UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=Q8I5X9_PLAF7 Length = 1450 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 213/1303 (16%), Positives = 440/1303 (33%), Gaps = 210/1303 (16%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD-PKDNLFVRIDRR 201 + +V Q S F + ++ I + ++ + Sbjct: 253 KGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYVEFLDITVGTPSVEENMIET 312 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET----------- 250 + P R L Y+ +D+ + K I N +++ +P LR + Sbjct: 313 KLTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRLPVMLRSDICVLNNKSEEEL 372 Query: 251 -----------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 F ++ +V + + + R I +++ + K Sbjct: 373 MKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNICATITSTTAESK-SRC 431 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRV 353 + ++ + + + + L G++ + +F H Y+ L Sbjct: 432 AIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQMIGSHKNYVNGILLSLYELYN 491 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 + L AL+ I + +RP + S+ E +E D+ G +R LL Sbjct: 492 ENIKTNLDALLYIGKKIRP-RLLAKGFFSSMKEKQVKNEK--DIIEEGLDFLSRVLLSHI 548 Query: 414 IEGSGIL---SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + S I ++++++D N K E+DD D+ GN+R+ G++ F R Sbjct: 549 QQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKR 608 Query: 471 VERAVKERL-------------------------SLGDLDTLMPQDMINAKPISAAVKEF 505 +K+++ + D+ +P+D+I +A Sbjct: 609 FYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGN 668 Query: 506 FG-------SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + S +SQ + + + ++ I R+++ + R R + P+ +G + Sbjct: 669 WNIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNS----QFEKGRKVSGPRALQPSQWGVL 724 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE---EGNYV 615 CP +TPEG + GL+ +L++ ++ + ++ L+ E EG + Sbjct: 725 CPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDSLTGEEIYKEGVFF 784 Query: 616 IAQAN---SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 + F++ + R G+ F +++ + + + G L L Sbjct: 785 VILNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIYDNFLHNA-IYISTDGGRLCRPLI 843 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT----------------- 715 + ++ + + L+ + + + V+ Sbjct: 844 IIENGKSKLLPQHIKALENGTINFFDLLKSSVIEWIDVNEQNNLLIALNESDISLSTTHL 903 Query: 716 ------AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 + G++ Y + ++ + M G Y ++ R + + P Sbjct: 904 EIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQAIGAIGY--NQFVRCDTLLYLLVYP 961 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 +P+ + + + +L GQN VA M + GY+ ED+I++++ + Sbjct: 962 Q----KPLVKSKTI---EFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGR 1014 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 + +++ + + G +I P V + E I D + K Sbjct: 1015 CMSLRKHSVELKKYFNGSNDIVLPSPLVINKLQQQRKEREIKSEIKNEKEKDGI--KQEH 1072 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE 949 + K K +VK S N + + K A + Sbjct: 1073 HHNNIDSKNNKSSYNNNVSKIDNVKKDSYGHKN----------ISNESKDDIKKMANKDI 1122 Query: 950 EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN 1009 L+ + I ++ G + K ++ + Sbjct: 1123 RKYHS------------LDMDGVASIGYLIKEGQLYVNKFSPKNIKDHVKDIGKVDINDF 1170 Query: 1010 QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 ++ ++ + +K + + LK+ K+ + R + GDK + R Sbjct: 1171 KINEI-KYKSVYPSYIDKIIFTE----------NSEGLKLYKIIMRQTRLPELGDKFSSR 1219 Query: 1070 HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN 1129 HG KGV+ + EDMP+ E+G D+++NP G PSRM +G++LE AA G+ Sbjct: 1220 HGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKY 1279 Query: 1130 AMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDG 1189 + ++ E + R F+ Sbjct: 1280 GSIFSGTPFEEIAEILFRYG-------------------------------------FNC 1302 Query: 1190 AKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG 1249 + + + L TGE E + +G +Y KL H+V DK+HAR+ G Sbjct: 1303 SSKELLYSGL-----------------TGEPLETYIFMGPIYYQKLKHMVQDKIHARARG 1345 Query: 1250 SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK------ 1303 L+T+QP G+++ GG R GEME L AYG + L E L + SD N Sbjct: 1346 PRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICEDCGMM 1405 Query: 1304 ----MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + MP + +L +E++++ + ++ + Sbjct: 1406 GYDLYCTFCKKCDKNIVIQMPYACKLLFQELQTMNVFPKIIVK 1448 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 59/439 (13%), Positives = 134/439 (30%), Gaps = 37/439 (8%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 + + P L V L+ ++S+ FI+++ + + A + + ++++ Sbjct: 241 EKWKLLPAYLKVKGLVKQHIESYNYFIKREIKT---IMNATTNKIIKSDIDEHFYVEFLD 297 Query: 73 YRLGEP---------VFDVQECQIRGVTYSAPLRVKL-----------------RLVIYE 106 +G P Q C+ R +TYSAP+ V + RL + Sbjct: 298 ITVGTPSVEENMIETKLTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRLPVML 357 Query: 107 REAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHS 166 R +E+ + +GE P G F++ GTERV++ Q S K + Sbjct: 358 RSDICVLNNKSEEELMKLGECPY-DPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNI 416 Query: 167 SGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFF 225 + S + + IILRA+ Y + ++I + Sbjct: 417 CATITSTT---AESKSRCAIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQMIG 473 Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 + EL E ++ + + + + K++ +I Sbjct: 474 SHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKDII 533 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANM-ELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 E +++++ +++ A + + +L + + + N Sbjct: 534 EEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLEL 593 Query: 345 PYISETLRVDPTNDRLS--ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 +L + R +I + + + N + + Sbjct: 594 AGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPK 653 Query: 403 MKFNRSLLREEIEGSGILS 421 R + G+ + Sbjct: 654 DIITRGMQTAISTGNWNIK 672 >UniRef50_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=281 Tax=cellular organisms RepID=RPC2_HUMAN Length = 1133 Score = 601 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 206/1256 (16%), Positives = 385/1256 (30%), Gaps = 221/1256 (17%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 + +V Q S F + + K + + + + + +L+ D R Sbjct: 37 KGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRP 96 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET------------ 250 P LR + Y+ +D+ + + I N L + +P LR Sbjct: 97 VSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFA 156 Query: 251 ----------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 F ++ KV + + + R I + ++ V + ++ Sbjct: 157 KLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSS--THEKKSRT 214 Query: 301 YIDESTGELICAANMEL-SLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRV 353 + G N + ++ G + + + + E + Sbjct: 215 NMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQK 274 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 ++ AL I +R ++ E L+ V +FN Sbjct: 275 AQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFN------- 327 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 +++++I + G +VDD D+ GN+R+ G++ F + Sbjct: 328 ----FRAKCIYTAVMVRRVI-LAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNS 382 Query: 474 AVKER----LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS---QFMDQNNPLSEITH 526 +K+ + + I+ + + S MD+ ++ Sbjct: 383 EMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSR 442 Query: 527 KRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 ISALG + R R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 443 LSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHI 502 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI--AQANSNL----DEEGHFVEDLVT 635 P K+ + ++++ L E + N N+ + V Sbjct: 503 TTDMED-GPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRL 561 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 R G + F + D + S G L ++ Sbjct: 562 MRRAGYINEFVSISTNLTDRCV-YISSDGGRLCRP-------------------YIIVKK 601 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 KP V +A +V+Y+D + N+ + E I Sbjct: 602 QKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEE----NDCNIALYEHTI------- 650 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 N++T L P T LG + +P+ +N Sbjct: 651 ----NKDT-----------------THLEIEPFTLLG-------VCAGLIPYPHHNQSPR 682 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 + ++ T +R L P V + ++ + Sbjct: 683 NTYQCAMGKQAMGTI----GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPA--- 735 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 + A+ D++D+ + + V+ Sbjct: 736 ----------------------GQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVY- 772 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 ++ KR ++ D + I + VE +++ Sbjct: 773 KNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSM 832 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 + + Q + + K + +D ++K+ L Sbjct: 833 PTVTQIPLEGSNVPQ-QPQYKDVPITYKGATDSYIEKVMISSNAED-----AFLIKMLLR 886 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 RR + GDK + RHG KGV I P EDMP+ ++G DI++NP Sbjct: 887 QTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNP--------------- 931 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 H + +G I E++ Sbjct: 932 HGFPSRMTVGKLI---------------------------------------ELLAGKAG 952 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + G F G+K ++ E L G+ + G TGE E + G +Y KL Sbjct: 953 VLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKL 1012 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DKMHAR+ G +++T+QP G+++ GG R GEME L YGA+ L E L + S Sbjct: 1013 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISS 1072 Query: 1296 D----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 D DV G+ H +P + +L +E++S+ I L+ Sbjct: 1073 DAFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1128 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 61/391 (15%), Positives = 115/391 (29%), Gaps = 47/391 (12%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQ 69 + + + P L V L+ +DSF FI + + S L+ Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTS-----DADPMWYLK 76 Query: 70 YVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKL-----------------RL 102 Y++ +G P EC++R +TYSAP+ V + R+ Sbjct: 77 YLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRM 136 Query: 103 VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKG 162 I R + + + E PL G F++ G E+VI+ Q S Sbjct: 137 PIMLRSSNCVLTGKTPAEFAKLNECPL-DPGGYFIVKGVEKVILIQEQLSKNRIIVEADR 195 Query: 163 KTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQIL 221 K V + + S + +P II +A+ + ++I+ Sbjct: 196 KGAVGASVTSSTH---EKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIV 252 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 + + + E + + F K K RR + Sbjct: 253 QMIGTEEHVM----AAFGPSLEECQKAQ--IFTQMQALKYIGNKVRRQRMWGGGPKKTKI 306 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 + E+ I V K++ + ++ + + L Sbjct: 307 EEARELLASTILTHVPVKEFNFRAKCIYTAVM----VRRVILAQGDNKVDDRDYYGNKRL 362 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 + + L D S + +I + P Sbjct: 363 ELAGQLLSLLFEDLFKKFNSEMKKIADQVIP 393 >UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplantae RepID=Q01GR3_OSTTA Length = 999 Score = 601 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 189/1154 (16%), Positives = 361/1154 (31%), Gaps = 233/1154 (20%) Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA---------- 293 E E F I + KV + + R T +K K + Sbjct: 22 ECPYDEGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPSKFMWQAECRSQPERGSRGASS 81 Query: 294 ---GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN------DLDHG 344 ++ A D + + + G + + + D + Sbjct: 82 CVMRQMHAVGTKDAPGPIRCTLPYIRTDIPIFVVFRALGFVADKDILEHICYDLADNEMM 141 Query: 345 PYISETLRVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + ++ + AL I + + E + + L VG Sbjct: 142 EMLRPSIEEAFVIQSQEVALDFIGKR----GSAVGVSREKRIKYAKEILQKELLPHVG-- 195 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 E + ++ +L+ G+ DD DH GN+R+ G + Sbjct: 196 ---------VREDCETKKAYFLGYMIHRLLLCSLGRRPEDDRDHYGNKRLDLGGPLLAQL 246 Query: 464 FRVGLVRVERAVKE--RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL---------- 511 FR ++ + V+ + + + Q I AK I+ +K + Sbjct: 247 FRQLFRKLTKDVRLYCQRCIDSGKEIQLQLAIKAKTITQGLKYSLATGNWGSQGAQDIRA 306 Query: 512 --SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 SQ +++ + S ++H RRI++ + RE + R +H + +G +CP ETPEG + Sbjct: 307 GVSQVLNRLSYSSTLSHLRRINS----PIGREGKLAKPRQLHNSLWGMICPAETPEGQAV 362 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH- 628 GL+ +L++ A + G P + D + + +S N Sbjct: 363 GLVKNLALMALVSV-GSPSEPILEFLDEWTMENLEEISPSLIAESTKIFLNGVWVGVHRD 421 Query: 629 ---FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 V L R + + V + + ++ + L D ++ L Sbjct: 422 PADLVRTLRKLRRQCDVDSSVSV-VHDIRLKELRLYTDYGRCTRPLFIVDDDQKLRIK-- 478 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 +Q + L E+ V S G ++YVD + Sbjct: 479 -KQHIELL----------TEKDVTGYS--WNELVTSGFIEYVDTEEEETTM--------- 516 Query: 746 AGIDIYNLTKYTRS-NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 + I +L +S ++ T + PS LG + + Sbjct: 517 ISMTIDDLAAARQSADRKTGVAIR-----------YTHCEIHPSMILG-------ICASI 558 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 +P+ +N S + + + +++ R LG P V A+ Sbjct: 559 IPFPDHNQ--SPRNTYQSAMGKQAMGMYVTNYQI--RMDTLGYVLFYPQKPLVTTRAMEY 614 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 L +L + AI + +DS L + + Sbjct: 615 L-------------------------HFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAI 649 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 + ++ R +++K+ + + ++ +D ++ Sbjct: 650 D-RGLFRSLYYRSFKDEEKKQGSLSREEFERPDRDTCLGMRHGTYDKLD----------- 697 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 D+ L++++ + K Sbjct: 698 -------------------DDGLIYDSAVLSKRFSKKDCSTGMKHAETGIIDQVLLTTND 738 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 L+ VK+ + R Q GDK + RHG KG + EDMP+ G DI++NP +P Sbjct: 739 QGLRFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIP 798 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 + IG + ++ + Sbjct: 799 ---------------SRMTIGQLVECIMGKVAACM------------------------- 818 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 G F +I +L G +Y+G TG + Sbjct: 819 --------------GKEGDATPFTPVTAEDISTMLHKCGYQKRGNEVMYNGHTGRMLDAQ 864 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + +G Y +L H+VDDK+H+R G ++T+QP+ G+++ GG RFGEME + ++GAA Sbjct: 865 IFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAA 924 Query: 1285 YTLQEMLTVKSD----DVNGRTKM-------------YKNIVDGNHQMEPGMPESFNVLL 1327 L+E L +SD V + + KN + ++ +P + +L Sbjct: 925 SFLKERLMDQSDAYRIHVCQKCGLIAVANLKNQTFECCKNPSERTSVVQVMVPYACKLLF 984 Query: 1328 KEIRSLGINIELED 1341 +E+ S+ I L Sbjct: 985 QELMSMAIAPRLIT 998 Score = 62.6 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 95/293 (32%), Gaps = 28/293 (9%) Query: 105 YEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 R ++ +GE P + G FVING+E+V+++Q S + +K K Sbjct: 1 MLRSDYCSLHGHTDKELTELGECPY-DEGGYFVINGSEKVLIAQERMSTNHVYVFEK-KQ 58 Query: 165 HSSGKVLYNARIIPYRGSWLDFEF-----------DPKDNLFVRIDR-RRKLPATIILRA 212 S R P RGS D + + R +P ++ RA Sbjct: 59 PSKFMWQAECRSQPERGSRGASSCVMRQMHAVGTKDAPGPIRCTLPYIRTDIPIFVVFRA 118 Query: 213 LNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITA 271 L + + IL+ + L+ + +F I++ G+R +A Sbjct: 119 LGFVADKDILEHICYDLADNEMMEMLRPSIEE--------AFVIQSQEVALDFIGKRGSA 170 Query: 272 RHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK 331 + + ++ + E + V +D + + LL L + Sbjct: 171 VGVSREKRIKYAKEILQKELLPHVGVREDCETKKA----YFLGYMIHRLLLCSLGRRPED 226 Query: 332 RIETLFTNDLDH-GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 + LD GP +++ R + R + G+ + A Sbjct: 227 DRDHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEIQLQLAIK 279 >UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata RepID=B6KDI3_TOXGO Length = 1332 Score = 593 bits (1529), Expect = e-167, Method: Composition-based stats. Identities = 218/1319 (16%), Positives = 395/1319 (29%), Gaps = 240/1319 (18%) Query: 93 SAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRS 152 S V L R VK + ++ + GT R Sbjct: 183 SYNFFVDTELQNILRAPSNRLVKSDVDPSFFI--------EFLNISVGTPRY-------E 227 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRI-DRRRKLPATIILR 211 G+ + + ++ Y A + +D E+ D + R +P + R Sbjct: 228 EGMILQRLTPRICRTREITYAAPVF------VDAEYSKGDEIIRRKHVEIGSIPVMLRSR 281 Query: 212 ALNYTTEQIL------DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 + + F+ + I ++ L+ E+L + + V Sbjct: 282 VCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVETDMKHNVC--- 338 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 A + + V D ++ A E +++ + Sbjct: 339 -----ATVTSATAESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQMI 393 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP-------GEPPTR 378 G T T + + + + AL+ + +RP P R Sbjct: 394 GAGGALADVTGNTAQEAVSLSLQDCH-TENVLTQQQALLWVGSRIRPKMQAKGFFTPVAR 452 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 A S S AV + E + ++++++D + Sbjct: 453 GALLSERGGAGRSAKSVVDEAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAASD 512 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL----------------- 481 +DD D+ GN+R+ G++ F R VK++ Sbjct: 513 PSLMDDKDYYGNKRLELAGQLLSLLFEDLFKRFCTHVKKQADYALSRYHQARGGAGGLGS 572 Query: 482 -------GDLDTLMPQDMINAKPISAAVKEFFG-------SSQLSQFMDQNNPLSEITHK 527 D +P D+I +A + S +SQ + + + ++ + Sbjct: 573 RKDEVPYPDCFRNLPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLGMM 632 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RI++ + R R + P+ +G +CP +TPEG + GL+ +L++ Sbjct: 633 TRINS----QFEKGRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDEDP 688 Query: 588 ETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLDEEGH----FVEDLVTCRSKGE 641 TP + + ++ +S E + + N L ++++ R GE Sbjct: 689 -TPISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLGVHRRPRQLMKNIRLLRRHGE 747 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 F V+ T + S G L L D+ R + Q L+ Sbjct: 748 VGEFVSVHVNEAH-KTVYIASDGGRLCRPLIVVDSGRPRLLPTHMAQLENGEMCFMDLLR 806 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG---IDIYNLTKYTR 758 + + + V+ + + I + E+ P + + + Sbjct: 807 SSILEWIDVNEENNLLIA-------LREEDITAETTHLEIDPLTLLGVVAGLIAFPNHNQ 859 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 S +NT M G+ A+G + +N +N D++L Sbjct: 860 SPRNTYQCAM-----------------------GKQAMGA------IAYNQFNRCDTLLY 890 Query: 819 SERVVQEDRFTT-----IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 Q+ + +H ++L + DI E IV Sbjct: 891 LLVYPQKPLCKSRTLDLVHFEQLPAGQNASVAIMSFSGYDI------------EDAIV-- 936 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 + G + G + + E K ++ + P Sbjct: 937 ---LNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPVAQASGPGSGKA------- 986 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 + + + +S + LE R+ +L V K Sbjct: 987 ----------ASGLHRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYVHKFSPTN 1036 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 + + L + D + KV Sbjct: 1037 TREHVS------DPLQLDNSLYAPSFARYKTVVPSYVERVVCTDNSD-----GCRTYKVM 1085 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 + R + GDK + RHG KGV+ I P ED+P+ E+G D+++NP Sbjct: 1086 MRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNP------------- 1132 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 H + +G + E++ Sbjct: 1133 --HGFPSRMTVGKMM---------------------------------------ELIAGK 1151 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 L+ G F G + E+L SG+ L G TGE + V G +Y Sbjct: 1152 SALQVGACQYGTAFGGVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQ 1211 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 KL H+V DK+HAR G L+T+QP G+A+ GG R GEME L AYG++ L E L + Sbjct: 1212 KLKHMVQDKIHARGRGPRQLLTRQPTEGRAKEGGLRLGEMERDCLVAYGSSALLMERLML 1271 Query: 1294 KSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 SD V G H MP + +L +E+ S+ + L + Sbjct: 1272 SSDVFEASVCSTCGLMGYEGWCPYCKSGKHVAPIRMPYACKLLFQELMSMNVCPRLHIK 1330 Score = 357 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 146/1100 (13%), Positives = 312/1100 (28%), Gaps = 210/1100 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 + P L+ ++S+ F++ + + + A + + +++++ Sbjct: 162 DKWRLLPAFFAAKGLVHQHIESYNFFVDTELQN---ILRAPSNRLVKSDVDPSFFIEFLN 218 Query: 73 YRLGEPVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +G P + + C+ R +TY+AP+ V + + I+ + V Sbjct: 219 ISVGTPRYEEGMILQRLTPRICRTREITYAAPVFVDAEYSKGD--------EIIRRKHVE 270 Query: 124 MGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDS 159 +G IP+M + G F++ GTE+V++ Q S Sbjct: 271 IGSIPVMLRSRVCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVE 330 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTE 218 K + V S LPA I+LRA+ T + Sbjct: 331 TDMKHNVCATVTSAT---AESKSRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQ 387 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 +I+ + E V L+ V ++ + ++ Sbjct: 388 EIMQMIGAGGALADVTGNTAQEAVSLSLQDCH-------TENVLTQQ--QALLWVGSRIR 438 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 + + S ++ A L +L+ + +G Sbjct: 439 PKMQAKGFFTPVARGALLSERGGAGRSAKSVVDEAVDVLHRVVLSHIETTG----SDFRA 494 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 I L + E A L LF Sbjct: 495 KTRFLCLMIRRVLDAASDPSLMDDKDYYGNK-------RLELAGQLLSLLFED------- 540 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI-------DHLGNR 451 + + + + + R G G + D N Sbjct: 541 ------LFKRFCTHVKKQAD--------YALSRYHQARGGAGGLGSRKDEVPYPDCFRN- 585 Query: 452 RIRSVGEMAENQFRVGLVRVERAVKE-RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 ++ + L +K R+ + ++ + + + Sbjct: 586 ---LPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRL------------SYIATLG 630 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 M + N S+ R++S R + P+ +G +CP +TPEG + G Sbjct: 631 ---MMTRIN--SQFEKGRKVS--------------GPRALQPSQWGMLCPCDTPEGESCG 671 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLDEEGH 628 L+ +L++ TP + + ++ +S E + + N L Sbjct: 672 LVKNLALVTHVTTDEDP-TPISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLGVHR 730 Query: 629 ----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA-LMGA 683 ++++ R GE F V+ T + S G L L D+ R L+ Sbjct: 731 RPRQLMKNIRLLRRHGEVGEFVSVHVNEAH-KTVYIASDGGRLCRPLIVVDSGRPRLLPT 789 Query: 684 NMQR----------------QAVPTLRADKPLVGTGMERAVAVDSGV------TAVAKRG 721 +M + + + L+ E + ++ T + Sbjct: 790 HMAQLENGEMCFMDLLRSSILEWIDVNEENNLLIALREEDITAETTHLEIDPLTLLGVVA 849 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G++ + + ++ + M G Y ++ R + + P +P+ + Sbjct: 850 GLIAFPNHNQSPRNTYQCAMGKQAMGAIAY--NQFNRCDTLLYLLVYPQ----KPLCKSR 903 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 L +L GQN VA M ++GY+ ED+I+++ V ++ + + Sbjct: 904 TL---DLVHFEQLPAGQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELK 960 Query: 842 DTKLGPEEITADIP--------------------------NVGEAALSKLDESGIVYIGA 875 G + T P L++ G+V +G Sbjct: 961 KYFNGSTDRTFPPPVAQASGPGSGKAASGLHRKSFFPGGRGAVSRRFEALEDDGVVRVGE 1020 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 + + V K +P + + D+SL P+ + Sbjct: 1021 LLEEDQVYVHKFSPTNTREHVSD------------PLQLDNSLYAPSFARYKTVVPSYVE 1068 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 R + ++ ++Q + + G + + A + + P Sbjct: 1069 RVVCTDNSDGCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDL 1128 Query: 996 RWLELGLTDEEKQNQLEQLA 1015 G ++ +L Sbjct: 1129 IMNPHGFPSRMTVGKMMELI 1148 >UniRef50_P08266 DNA-directed RNA polymerase II subunit RPB2 n=26 Tax=Eukaryota RepID=RPB2_DROME Length = 1176 Score = 586 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 211/1384 (15%), Positives = 403/1384 (29%), Gaps = 293/1384 (21%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + D L+ QLDSF +FI+ + A Q SG E Sbjct: 28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVE------- 80 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 P F ++ ++ L +G+ P+M Sbjct: 81 -TPPRFSLK-------------FEQIYLSKPTHWEKDGSPS------------PMM---- 110 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 R + + + + K + + + Sbjct: 111 ------------PNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFI-------- 150 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 K+P + + DL + E F Sbjct: 151 -------GKIPIMLRSTYCLLSQLTDRDL----------------TELNECPLDPGGYFI 187 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDV------KLIEVPVEYIAGKVVAKDYIDESTGE 308 I + KV + + + T KD + + + + + Sbjct: 188 INGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQN 247 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + +A + + +L + Q + I E + D + E+ Sbjct: 248 IKKSAIGQRIIAILPYIKQE-IPIMIVFRALGFVADRDILEHIIYDFDDP------EMME 300 Query: 369 MMRPGEPPTREAAESLFENLFFSED--RYDLSAVGRMKFNRSLLRE-------EIEGSGI 419 M++P E F R ++ R+K+ + +L++ + Sbjct: 301 MVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCET 360 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 + ++ +L+ G+ E+DD DH GN+R+ G + FR + + V+ Sbjct: 361 KKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYT 420 Query: 480 SL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEI 524 + I I+ ++ + SQ +++ S + Sbjct: 421 QKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTL 480 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 +H RR+++ + R+ + R +H T +G +CP ETPEG +GL+ +L++ A + Sbjct: 481 SHLRRVNS----PIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISV- 535 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE----DLVTCRSKG 640 G +P + + + + ++ + N E L R + Sbjct: 536 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 595 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + + + ++ + + L + L L Sbjct: 596 DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLL------------------LK 637 Query: 701 GTGME--RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 T +E + ++ V GVV+Y+D + + Y+L + Sbjct: 638 KTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVM---------IAMSPYDLKQDKD 688 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 P+ LG + + +P+ +N S Sbjct: 689 Y---------------AYCTTYTHCEIHPAMILG-------VCASIIPFPDHNQ--SPRN 724 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 + + + ++I R L P V ++ L + Sbjct: 725 TYQSAMGKQAMGVYITNFHV--RMDTLAHVLYYPMKPLVTTRSMEYLRFRELPA------ 776 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG-VSGTVIDVQVFTRD 937 + AI + +DS + + G V + Sbjct: 777 -------------------GINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYK 817 Query: 938 GVE---KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 E + E+ + + L+ + V K LP Sbjct: 818 DSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPE 877 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 D+E + ++ +++ + + +T + K K+ + Sbjct: 878 --------NDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSE----GYKFCKIRV 925 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 R Q GDK A RHG KG EDM + G DI++NP +PSRM IG ++E Sbjct: 926 RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIE 985 Query: 1115 THLGMAAKGIGDKINAMLKQQQ-EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 G G+ +A V K+ F+Q + Sbjct: 986 CLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNG------------ 1033 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 G I VF +G Y Sbjct: 1034 ---HTGRKINAQVF---------------------------------------LGPTYYQ 1051 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 +L H+VDDK+H+R+ G ++ +QP+ G+A+ GG RFGEME ++GAA L+E L Sbjct: 1052 RLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFE 1111 Query: 1294 KSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 SD K + + +P + +L +E+ S+ I Sbjct: 1112 VSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAP 1171 Query: 1338 ELED 1341 L Sbjct: 1172 RLMV 1175 >UniRef50_B7FVG3 DNA-directed RNA polymerase n=5 Tax=Eukaryota RepID=B7FVG3_PHATR Length = 1212 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 222/1404 (15%), Positives = 408/1404 (29%), Gaps = 298/1404 (21%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE---GQYGLEAAFRSVFPIQSYSGN- 65 + + L+ QLDSF +FI+ + G + + Y Sbjct: 27 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVGYDDEA 86 Query: 66 ------------SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 E+ + L +P +GT Sbjct: 87 YDREQEKETKFVFEIHFGQVYLSKPT---------------------------TVEKDGT 119 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 + ++ E + MT + ++ V ++Q V + Sbjct: 120 ITNMFPHE---ARLRNMTYSAPLYVD----VDLNQYQVGREVNVNDPSE----------- 161 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ------ILDLFFEK 227 G + E K+ L +P + + + + + +++ Sbjct: 162 -----DLGEPVATEHAKKEFL-------GYVPIMLRSLFCVLSDKDDADLSDLGECVYDQ 209 Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 + + + ++ + ERL + +K + I + + V Sbjct: 210 GGYFVINGSEKVIIAQERLSNNHVY--------AFKKKQPSKFSWVIETRSQVENSTRPV 261 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN------DL 341 YI E + + ++ G+ + + D Sbjct: 262 STLYIQMYHKGGRGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDG 321 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 + +L R ++ T+E + + + L VG Sbjct: 322 EMMDLFRPSLEEAFVIQRQDVALDFIGRRGSARDVTKEDRMRYAQAIL---QKEVLPHVG 378 Query: 402 RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAE 461 E I + KL+ R G+ E DD DH G +R+ G + Sbjct: 379 -----------TEEHCETKKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLG 427 Query: 462 NQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-------- 511 FRV ++ + V++ L + I + I+ +K + Sbjct: 428 GLFRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNWGDKGMATK 487 Query: 512 ---SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQ +++ S ++H RR + L R + R +H TH+G VCP ETPEG Sbjct: 488 AGVSQVLNRLTYASSLSHLRRCNT----PLARTGKQAKPRQLHNTHWGMVCPAETPEGQA 543 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEGNYVIAQANSNLDEE 626 +GL+ +L++ A G + P + + T+ + S I E N N N Sbjct: 544 VGLVKNLALMAYITT-GTAQVPVLEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGI 602 Query: 627 GH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 E + R + D D + + + R L Sbjct: 603 HRDPKALEETFRSLRRMVDIDAEVSIVRDIAD----------KEVRIYTDAGRICRPLFV 652 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 Q+ A ++ + GM+ G+V+Y+D + M Sbjct: 653 VQEQKLA---IKKHHIMQLQGMD--PNEKKLTWTDLLMEGLVEYIDTEEEETTMV--AME 705 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 P + D PS LG + Sbjct: 706 PNDLDSDD------------------------SYSSTYTHCEIHPSMILG-------VCA 734 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 + +P+ +N S + + + I+ R + P A+ Sbjct: 735 SIIPFPDHNQ--SPRNTYQSAMGKQAMGIYASNY--QVRMDTMAHVLHYPQKPLCTTRAM 790 Query: 863 SKLDESGIVY-----IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 L + +G V G E+ L+ + S Sbjct: 791 EFLHFRELPSGVNCIVGILVYTG--------------YNQEDSLILNQSAIDRGLFRSSY 836 Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 R ID + + G + E+ + + E L+ Sbjct: 837 YRCY-------IDQEKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDDDGLVAPGT 889 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 + V K + G+ + +++ + + I+ Sbjct: 890 RVSGDDVLIGKTAPID----ATAGMP--------SRYSKRDCSTSMKANEHGIVDNVLIS 937 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 + + KV + R Q GDK A RHG KG I EDMP+ G DI+ Sbjct: 938 TTKE----GYRFTKVRIRNVRTPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGIVPDII 993 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 +NP +PSRM I Q++E LG G + +A V + + Sbjct: 994 VNPHAIPSRMTIAQLIECLLGKVVVFQGCEGDATPFTDVTVEDISTRLHAMGYQRHGNEA 1053 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 G P+ VF Sbjct: 1054 LYQG---------------HTGRPLNARVF------------------------------ 1068 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 +G + +L HLVDDK+H+R+ G +++T+QPL G+++ GG R GEME Sbjct: 1069 ---------IGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMERDC 1119 Query: 1278 LEAYGAAYTLQEMLTVKSD----DVNGRTKM------------YKN--IVDG-NHQMEPG 1318 L +G A +++ V SD + R + ++ V + Sbjct: 1120 LITHGCANFMRDRFFVNSDQYRIHICERCGLTAQANLKKMTYECRSPMCVGRPTQICQVE 1179 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +P + +LL+E+ S+ I + + Sbjct: 1180 IPYAAKLLLQELNSMCIQTRIYTK 1203 >UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=128 Tax=Eukaryota RepID=RPB2_HUMAN Length = 1174 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 212/1385 (15%), Positives = 391/1385 (28%), Gaps = 298/1385 (21%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + D L+ QLDSF +FI+ + Q SG E Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVE------- 79 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 P + ++ ++ L +G P+M Sbjct: 80 -EPPRYLLK-------------FEQIYLSKPTHWERDGAPS------------PMM---- 109 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 R + + + +I L + Sbjct: 110 ------------PNEARLRNLTYSAPLYVDI-------TKTVIKEGEEQLQTQHQKTFI- 149 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 K+P + DL + E F Sbjct: 150 -------GKIPIMLRSTYCLLNGLTDRDL----------------CELNECPLDPGGYFI 186 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDD-----------VKLIEVPVEYIAGKVVAKDYID 303 I + KV + + + T +KD ++ P I ++A+ Sbjct: 187 INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246 Query: 304 EST-----GELICAANMELSLDLLAKLSQSGHKRIETLFTN------DLDHGPYISETLR 352 + ++ + ++ G + + D + + +L Sbjct: 247 AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306 Query: 353 VDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 ++ AL I E + + L VG Sbjct: 307 EAFVIQEQNVALNFIGSR----GAKPGVTKEKRIKYAKEVLQKEMLPHVG---------- 352 Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 + + ++ +L+ G+ E+DD DH GN+R+ G + FR + Sbjct: 353 -VSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNL 411 Query: 472 ERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMD 516 + V+ + I + IS +K + SQ ++ Sbjct: 412 LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLN 471 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + S ++H RR+++ + R+ + R +H T +G VCP ETPEG +GL+ +L+ Sbjct: 472 RLTFASTLSHLRRLNS----PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLA 527 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVED 632 + A + G +P + + + + +S + N + Sbjct: 528 LMAYISV-GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 L R + + + + + ++ + + L + + L+ Q Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQL--- 643 Query: 693 LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN 752 + ++ GVV+Y+D + M P + Sbjct: 644 -------------KEREYNNYSWQDLVASGVVEYIDTLEEETVM--LAMTPDDL------ 682 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 PS LG + + +P+ +N Sbjct: 683 -----------------QEKEVAYCSTYTHCEIHPSMILG-------VCASIIPFPDHNQ 718 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 S + + + ++I R L P V ++ L + Sbjct: 719 --SPRNTYQSAMGKQAMGVYITNFHV--RMDTLAHVLYYPQKPLVTTRSMEYLRFRELPA 774 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDV 931 + AI + +DS + + V G V Sbjct: 775 -------------------------GINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSV 809 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 + E K + E + + G+ I L G+ A + Sbjct: 810 FYRSYKEQESKKGFDQEEV---------FEKPTRETCQGMRHAIYDKLDDDGLIAPGVRV 860 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 D + +T E +++LE +Y + + L K K Sbjct: 861 SGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCK 920 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 + + R Q GDK A RHG KG EDMP+ G DI+ Sbjct: 921 IRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDII-------------- 966 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 + H + IG I + + Sbjct: 967 -INPHAIPSRMTIGHLIECLQGKVSAN--------------------------------- 992 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + + ATP D +I LL G LY+G TG + + +G Y Sbjct: 993 -----KGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 +L H+VDDK+H+R+ G ++ +QP+ G+++ GG RFGEME A+GAA L+E L Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107 Query: 1292 TVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 SD + + MP + +L +E+ S+ I Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167 Query: 1336 NIELE 1340 + Sbjct: 1168 APRMM 1172 >UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota RepID=C4Q1D7_SCHMA Length = 1304 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 210/1381 (15%), Positives = 409/1381 (29%), Gaps = 287/1381 (20%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + D L+ QLDSF +FI+ S+ I S ELQ Sbjct: 153 WIVISSYFDEKGLVRQQLDSFDEFIQ-------------TSIQKIVEDSPIIELQ----- 194 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM----GEIPLM 130 E Q G P V+ RL + + T + V M + + Sbjct: 195 --------AEAQHSGGILETP--VQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNL 244 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 T ++ +++I ++ + Sbjct: 245 TYAAPLYVDVMKKIIRDEIEEEKPL----------------------------------E 270 Query: 191 KDNLFVRIDRRRKLPATIILRALNYT------TEQILDLFFEKVIFEIRDNKLQMELVPE 244 K + K+P + + ++ + + + I + ++ + E Sbjct: 271 KKFI-------GKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIINGSEKVLIAQE 323 Query: 245 RLRGETASFDIEANGKVYVEKGRRI-TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 ++ T + + K + R R + ++ + + + I Sbjct: 324 KMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMMARGGKDGSKRATIGQRIV 383 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP-TNDRLSA 362 + + + L ++ +D + I +L ++ A Sbjct: 384 AILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLDDAFVIQEQKVA 443 Query: 363 LVEIYRM-MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 L I RPG E + + L VG + Sbjct: 444 LNFIGSRGARPGV-----TKEKRIKYAKEILQKETLPHVG-----------VSDFCETRK 487 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 + ++ +L+ + +VDD DH GN+R+ G + FR + + ++ Sbjct: 488 AYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQK 547 Query: 482 --GDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITH 526 + I ++ I+ +K + SQ +++ S ++H Sbjct: 548 FIDKGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSH 607 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 RR+++ + R+ R +H T +G +CP ETPEG +GL+ +L++ A + G Sbjct: 608 LRRLNS----PIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISV-GS 662 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG----HFVEDLVTCRSKGES 642 +P + + + + ++ G N H + L R + + Sbjct: 663 QPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTLRKLRRQVDV 722 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 + + ++ + + L + + L ++R + L+ Sbjct: 723 IVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLL----LKRSHIELLKDK------ 772 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 A + GVV+Y+D + M P E Sbjct: 773 ------AYNRYSWQDLVLSGVVEYIDTLEEETVM--IAMGPAEM---------------- 808 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 + + PS LG + + +P+ +N S + + Sbjct: 809 --------QAAVNYCKTHTHCEIHPSMILG-------ICASIIPFPDHNQ--SPRNTYQS 851 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 + ++I R L P V ++ L + Sbjct: 852 AMGKQAMGVYISNFHT--RMDTLANVLYYPQKPLVATRSMEYLRFRELPA---------- 899 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEK 941 + AI + +DS + + + G T E Sbjct: 900 ---------------GINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKDQET 944 Query: 942 ---DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 E+ + + L+ + V K LP Sbjct: 945 RHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPE---- 1000 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 ++E + + ++ + + + +T ++ K KV + + Sbjct: 1001 ----NEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNE----GNKFCKVRVRTTK 1052 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 Q GDK A RHG KG EDMP+ G DI++NP +PSRM IG ++E G Sbjct: 1053 APQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 1112 Query: 1119 MAAKGIGDKINAMLKQQQ-EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 + G+ +A V K+ +Q + Sbjct: 1113 KVSANKGEIGDATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNG---------------- 1156 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 F G + + +G Y +L H Sbjct: 1157 ---------FTG-----------------------------RKLNSQIFLGPTYYQRLKH 1178 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 +VDDK+H+RS G ++ +QP+ G+++ GG RFGEME A+GAA L+E L SD Sbjct: 1179 MVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDP 1238 Query: 1298 VNGRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 ++ + +P + +L +E+ S+ I + Sbjct: 1239 YQVYVCNLCGLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMMI 1298 Query: 1342 E 1342 Sbjct: 1299 N 1299 >UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acholeplasma sp. DM-2009 RepID=B9VQ44_9MOLU Length = 1223 Score = 577 bits (1486), Expect = e-162, Method: Composition-based stats. Identities = 337/885 (38%), Positives = 480/885 (54%), Gaps = 75/885 (8%) Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 ++ D +E E + + + G+V VE G +T + L + L Sbjct: 272 DLYGKIDGITPIEYAKEIIVEQNIVNLL--TGEVIVEAGSVLTPEVRQTLLVNREGLNYA 329 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS--GHKRIETLFTNDLDHGP 345 + Y+ + D + L E++ ++ ++ ++ K +E L + Sbjct: 330 SLRYLRT-FIDHDILLADDSVLFYE-GTEVTDEVYFQIYENKQNLKSLEDLKYATVYAKQ 387 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF---FSEDRYDLSAVGR 402 I + L ++ + + + +M G T E L N + +Y L A + Sbjct: 388 DI-DILEDYRRHESVESQRDHKPIMYCGYEITDENLLELQINRNKLDENVIKYFLVAGKK 446 Query: 403 MKFNRS-----------------------------LLREEIEGSGILSKDDIIDVMKKLI 433 +F R + + E ++ DII + + Sbjct: 447 GEFYRKESQRRATFVEVIQIKAAKDAKDDKDVIELIGHDSRETRLHITVSDIIASISYYL 506 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI 493 ++ +G G++DDIDHL NRR+R +GE+ +NQFR+GL ++E+ +K+++S D Q +I Sbjct: 507 NLYDGVGKIDDIDHLSNRRLRLIGELLKNQFRIGLAKLEKNIKDKMSTADAKEASLQSLI 566 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 N KP++A++KEFFGSSQLSQFMDQ NPL+E+T KRR+SALG GGL R+RAG EVRDVH + Sbjct: 567 NIKPLTASLKEFFGSSQLSQFMDQINPLAELTQKRRVSALGTGGLARDRAGVEVRDVHES 626 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG-----VVTDEIHYLSA 608 HYGR+CPIETPEGP+IGLI+SL+ YA+ ++YGF++TPY KV VT E Y +A Sbjct: 627 HYGRICPIETPEGPSIGLISSLASYAKVDQYGFIQTPYLKVDKSDPEHPFVTSEYVYFTA 686 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 EE +++IA A+S DE GHF + V R G++ + +VDYMDVS +Q+VSV S I Sbjct: 687 GEEEHHIIASADSQTDENGHFKTETVIGRFMGDTRSYPSKKVDYMDVSPKQIVSVATSSI 746 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 PFLEHDDA+RALMGANMQRQAVP L D P+VGTG+E A DSG VA GVV Y D Sbjct: 747 PFLEHDDASRALMGANMQRQAVPLLVPDSPIVGTGIEYRSAKDSGSAIVAHVDGVVTYAD 806 Query: 729 ASRIVIKVNEDEMYPGEAG----------------------------IDIYNLTKYTRSN 760 +IVI V + G + Y LT++ RSN Sbjct: 807 GRKIVIAVKPEASIKTTRGKLVYDKDTEFNWEAYDQIRQAKMTDLLRFETYPLTQFLRSN 866 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q+T I Q P V +GE +++GDV+ADGPS + GELALG+N+ VAFM W GYN+ED++++SE Sbjct: 867 QDTSILQKPIVQIGEKIDKGDVIADGPSINKGELALGRNVVVAFMTWEGYNYEDAVIMSE 926 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 +V+ D +T+IHI E SRDTKLG EEIT +IPNV AL LD+ G+V G EV G Sbjct: 927 DLVKNDVYTSIHIDEHQVESRDTKLGKEEITREIPNVSPDALKFLDDRGVVIPGTEVKEG 986 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGV 939 DILVGK+TPKG+T+ TPEEKLL+AIF EKA +V+D+SL+VP+G G V +Q F++ +G Sbjct: 987 DILVGKITPKGQTEPTPEEKLLQAIFNEKAREVRDTSLKVPHGGGGIVHSIQYFSKSNGD 1046 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 E E+ + + + +K + G I +L + D P D L Sbjct: 1047 ELGPGVNEVIRVYIVKKRKISEGDKMAGRHGNKGVISKILPREDMPY-MADGTPVDIMLN 1105 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 L + N + L + K+ DL Sbjct: 1106 -PLGVPSRMNIGQVLEIHLGMAAKKLGIKVATPVFDGLTQLDLEQ 1149 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 3/123 (2%) Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD- 354 +Y + + + L A L G IE + + + ET + D Sbjct: 1 GAWLEYEMGAKNIFYGKLDRSKKVSLTALLQAFGFDGIEEIKKLFPTYKKMLDETFKKDE 60 Query: 355 --PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 +A+ ++Y +R GE AA+ F RYDL VGR KF + L Sbjct: 61 KEGILSSDTAIEDLYSKLRQGEKIPVSAAKEFVRTRLFDSRRYDLEEVGRYKFKQKLDIT 120 Query: 413 EIE 415 Sbjct: 121 NRL 123 >UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN02_HODCD Length = 1267 Score = 576 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 313/876 (35%), Positives = 463/876 (52%), Gaps = 49/876 (5%) Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + + V + F SS Q+ DQ N LSE++H+ R++ +G GG+ A RDV H Sbjct: 411 QRKLQPVVSKLFRSSSACQYADQVNSLSELSHRLRLTCMGGGGVNARSADTRSRDVRKWH 470 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G+VCPIE+PEG +IGL+ L++YA+ G + T + K G++++++ L+ + + Sbjct: 471 FGKVCPIESPEGQSIGLVLQLAMYARVEASGHIATMFAKSRRGLISNQMLALNCFSQQAF 530 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 IA ++ V + ++ + VD + Q+ S +LIPFLEH+ Sbjct: 531 SIAIFGASP------ASARVMSFKACKPAMCAISAVDLWPATNAQLFSPAVNLIPFLEHN 584 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DA RALM +NM +QA+P PLVGTG ERAV + +G +A + VV DA+++V+ Sbjct: 585 DATRALMASNMLKQALPLAEPQAPLVGTGEERAVMLAAGHNLLADQHCVVVRADAAQVVV 644 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 P Y + + TRSNQ C V + ++ GDV+A+ S+D GE+ Sbjct: 645 YC------PCADAYKAYLVPEPTRSNQGVCRRLRVVVEPNQVLKAGDVVAECQSSDNGEM 698 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 +LG N+ VAFM WNG+N+EDSIL+SE V+ ++H+ +L T G E +T ++ Sbjct: 699 SLGANLLVAFMCWNGFNYEDSILLSEAVIARGLLDSLHVLKLKAKVLRTAFGDELVTNEL 758 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ-------------------- 894 P V E + L E G+V +G V D+LVGK++P Sbjct: 759 PMVAEKHKAHLSEQGVVSVGDTVCEHDVLVGKLSPVDYADSLDVATADAVATAGADDGGD 818 Query: 895 ------LTPEEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALE 947 L GE VK +SLRVP GV +VIDV + + + +L Sbjct: 819 DGDSGGDDGLSVTLVNDMGENIRYVKSTSLRVPTGVECASVIDVSFASCEA----EASLG 874 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + DL + G ++ AV G A K LE ++ + Sbjct: 875 ESALDACVKELDLIQRRYARRLGKVAKWAAVGFDG---ANACSKPDHGLVLEAKSSNAQA 931 Query: 1008 QNQLEQLAEQYD-ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 Q + L + Y E+ F + A +I+ + VL + V L V++ I+ GDK+ Sbjct: 932 QQAISLLRQLYACEVDALFARASAAASARISCDGPNSASVLDEITVTLLVRKSIKAGDKV 991 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 +GRHGNKGVIS++ P EDMP+ +GTP+DIVLNPL VPSRMNIGQILE LG+ +G Sbjct: 992 SGRHGNKGVISRVAPAEDMPHLADGTPIDIVLNPLSVPSRMNIGQILEARLGLVGLALGA 1051 Query: 1127 KINAMLKQQQEVAKLRE-FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 + ++ Q E ++ A + + +DL S V+ LA L +G+ + P Sbjct: 1052 EFERVVDACQVADASSERELEGAKSKISSLFPSLDLRRASASRVLALARKLSRGVGLECP 1111 Query: 1186 VFDGAKEAEIKELLKLGD-LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 F EA IK L + L SG+++L+DG TG F++ VG +Y+LKLNHLVDDKM+ Sbjct: 1112 PFCHLSEACIKALCRRAGALDASGRLQLFDGVTGLPFDQQTAVGSIYVLKLNHLVDDKMY 1171 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 AR+TG YS+VTQQPL GKA GGQR GEMEVWAL++YG +Y L+E LT K DDV R M Sbjct: 1172 ARATGPYSMVTQQPLKGKANKGGQRLGEMEVWALQSYGVSYMLKEALTAKCDDVAARHVM 1231 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +I ++E ES +L++E+ SL ++ E Sbjct: 1232 ASSIAGCAPRVESSWGESLLLLVREMCSLCVDFRFE 1267 >UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVD4_PHATR Length = 1211 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 210/1273 (16%), Positives = 391/1273 (30%), Gaps = 214/1273 (16%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD-----PKDNLFVR 197 R ++ Q S F D + + S I ++ Sbjct: 78 RSLLRQHIDSFDHFVDVEMQQIVQS---PSACEIRSEHDPKFYLRYEACWVGEPSVEEDS 134 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET------- 250 + P LR Y+ +++ + + + K+ + +P LR + Sbjct: 135 YSVKSATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVMIGRMPIMLRSKKCLLRDRS 194 Query: 251 ---------------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 F I+ KV + + + R I + + I + + Sbjct: 195 EDDLAGMKECPYDPGGYFVIKGVEKVILIQEQLSKNRVILEEDNKG---IMASITSSTHE 251 Query: 296 VVAKDYIDESTGELICAANMELS-LDLLAKLSQSGHKRIETLFTNDLDHGPYI------S 348 +K YI G + N + + L G + L P I Sbjct: 252 RKSKAYILIKNGRVYLKNNTLGDDIPVAVVLKAMGIESDLELVQLVGSESPIINALALSL 311 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 E + + AL I +R P+ ++ E R L+ V Sbjct: 312 EEPSRLGIHTQAQALRFIGAKIRGRSGPSGPSSSYRKNVSPEDEAREVLANVVLSH---- 367 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 I ++++++ + GK +DD D+ GN+R+ G + F Sbjct: 368 --VPVTHFDFREKALYIGHIVRRVLLVHLGKMPLDDKDYYGNKRLELAGNLLSLLFEDLF 425 Query: 469 VRVERAVKER----LSLGDL-DTLMPQDMINAKPISAAVKEFFGSSQL--SQF-MDQNNP 520 + +K + LS + I I+ + + +F MD+ Sbjct: 426 KIFNKDLKRQADLVLSKPNRTQAFDVVKTIRPDTITNGMINAIATGNWVLKRFRMDRAGV 485 Query: 521 LSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 ++ +SALG + R R + P+ +G +CP +TPEG GL+ +L Sbjct: 486 TQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNL 545 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNLDEEG----HF 629 ++ P ++ + +++ ++ E ++ + N + Sbjct: 546 ALLGHITTDEADTRPIERICRDLGVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPREL 605 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 V +L R +G + + HD+ + + R Sbjct: 606 VRNLRKMRRRG----------------------LAGEFVSVYLHDEQCAVHIATDGGRVC 643 Query: 690 VPTLRADK----PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 P L D+ P + ++A+ + R G+V+YVD + + E Sbjct: 644 RPLLIVDEETGLPKLQQIHMESLALGTMDITDLMRQGIVEYVDCNEENNTLIAVTERDLE 703 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 I ++ L TR + T + P LG + + Sbjct: 704 VAI-LHGLE--TRKMRYTHLEVDPFTILG-------------------------VVGGII 735 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 P+ +N + + ++ ++ + + R L I P V L + Sbjct: 736 PFPHHNQSPRNTYTVAMAKQAMG-SVSMNQYE---RMDGLIYTLIYPQKPMVKSRTLDLV 791 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI---FGEKASDVKDSSLRVPN 922 + I G + + ++ G A+ FG K + V Sbjct: 792 NFDNIP------GGHNACIAVMSYSGYDIEDAIILNKAAVDRGFGRCMVLRKHQTS-VRR 844 Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 +GT+ G ++ R+ + G Sbjct: 845 YANGTMDRTCAPPDPG------------SFPDGEDDKRFARYMAIDKDGICRVGEKIENG 892 Query: 983 GVEAEKLDKLPRDRWL---ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 V K + + G L + K + Sbjct: 893 SVMVNKESPADTTSNMAGVDFGFNSGMSMAHLN--YKPSGVSYRGSASTYVDKVLITSNE 950 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 ++ ++KV L RR + GDK A RHG KGV I P ED+P++E G D++ Sbjct: 951 NE-----QFLIKVMLRQVRRPEIGDKFASRHGQKGVCGLIVPEEDLPFNEFGHVPDLI-- 1003 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 MN H + +G + + G ++ Sbjct: 1004 -------MN------PHGFPSRMTVGKLLELL----------------VGKAGLYEGRQG 1034 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 S F +E E L L +G+ LY G GE Sbjct: 1035 YSSAFGEE------------------FGSADTAQSASEALLRNGLNYTGKDILYSGTNGE 1076 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + G ++ KL H+V DK HAR+ G +++T+QP G+++ GG R GEME L Sbjct: 1077 PLDAYIFSGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLI 1136 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTK----------MYKNIVDGNHQMEPGMPESFNVLLKE 1329 AYG + + E L SD + + G + +P + +L +E Sbjct: 1137 AYGVSNLIMERLMHSSDAFSANVCLTCGLLQYEGWCQYCRSGEKVADIRLPYACKLLFQE 1196 Query: 1330 IRSLGINIELEDE 1342 ++S+ + L + Sbjct: 1197 LQSMNVLPRLRLQ 1209 Score = 123 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 67/383 (17%), Positives = 122/383 (31%), Gaps = 60/383 (15%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF--PIQS-YSGNS 66 +R + P L + LL +DSF F++ + ++ +S I+S + Sbjct: 63 SLRDKWRLLPYFLRLRSLLRQHIDSFDHFVDVE------MQQIVQSPSACEIRSEHDPKF 116 Query: 67 ELQYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 L+Y + +GEP +C++R TYSAP+ V +R + Sbjct: 117 YLRYEACWVGEPSVEEDSYSVKSATPFQCRLRDCTYSAPIYVNVRYT--------RGRQI 168 Query: 117 IKEQEVYMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRS 152 + +++V +G +P+M + FVI G E+VI+ Q S Sbjct: 169 VVKRKVMIGRMPIMLRSKKCLLRDRSEDDLAGMKECPYDPGGYFVIKGVEKVILIQEQLS 228 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRA 212 + K + R S +P ++L+A Sbjct: 229 KNRVILEEDNKGIMASITSSTH----ERKSKAYILIKNGRVYLKNNTLGDDIPVAVVLKA 284 Query: 213 LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG-KVYVEKGRRITA 271 + ++ L I L +E P RL T + + G K+ G + Sbjct: 285 MGIESDLELVQLVGSESPIINALALSLEE-PSRLGIHTQAQALRFIGAKIRGRSGPSGPS 343 Query: 272 RHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK 331 R+ + + EV + V + I + LL L + Sbjct: 344 SSYRKNVSPEDEAREVLANVVLSHVPVTHFDFREKALYI---GHIVRRVLLVHLGKMPLD 400 Query: 332 RIETLFTNDLDHGPYISETLRVD 354 + L+ + L D Sbjct: 401 DKDYYGNKRLELAGNLLSLLFED 423 >UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota RepID=Q5KIB7_CRYNE Length = 1193 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 205/1389 (14%), Positives = 409/1389 (29%), Gaps = 295/1389 (21%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 E + + L+ QL+SF +FIE + I Sbjct: 46 DEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQ-------------EIVDDHSR 92 Query: 66 SEL-QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 L Q+ Y + + E+ Sbjct: 93 LTLDQFTQYT------------------------------------GVAGDETRRYEISF 116 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G+I + ++G ++ Q R + + + + + P W Sbjct: 117 GQI-YLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPVEADWQ 175 Query: 185 DFEFDPKDNLFVRIDRRR--KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 D + ++ K+P + + Sbjct: 176 PAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQC----------------HEI 219 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 E + F I + KV + + R T L K E + K Sbjct: 220 GECPYDQGGYFIISGSEKVLIAQERMATNHVFVFL-KAAPARFTYFAEINSQKEKGGRVA 278 Query: 303 DESTGELICAANMEL--SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + + + A+ + + ++ + + + + Sbjct: 279 NHTEVRMYARASGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHIC---FGAED 335 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 AL+E M++P E F +DR Sbjct: 336 EALLE---MLQPS-----------IEESFAVQDR-------------------------D 356 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER-- 478 + D I G+ + +R R+ ++ +F + E ++ Sbjct: 357 TALDFI-----------GRRGQHEK-APRAQRQRAAFDILHKEFLPHVSTAEGFESKKAY 404 Query: 479 ----LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL----------SQFMDQNNPLSEI 524 + + I I+ +K + SQ +++ S + Sbjct: 405 FLGYMCVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRDNTRAGVSQVLNRYTFASTL 464 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 +H RR + + R+ + R +H TH+G VCP ETPEG GL+ +L++ + + Sbjct: 465 SHLRRTNT----PIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISV- 519 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKG 640 G P + + +++ + N +L+ R G Sbjct: 520 GSYSAPVMEFLEEWGLEDLSEY--QDAPTATKVFVNGVWMGIHRDAPTLHNNLLQMRRGG 577 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + D + L + + R L + Q + R + Sbjct: 578 QLKYEVSIVRDIRE----------RELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRI 627 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASR---IVIKVNEDEMYPGEAGIDIYNLTKYT 757 + + SG G+V+YVDA+ I+I + +++ + L + Sbjct: 628 DQMADE--GLLSGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVR-D 684 Query: 758 RSNQNT-CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 R+ N + + ++ + PS LG + + +P+ +N S Sbjct: 685 RAAHNLESFDPAARIKSTVWSQQYTHMEIHPSMILG-------VCASIVPFPDHNQ--SP 735 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 + + + + + R + P ++ L Sbjct: 736 RNTYQSAMGKQAMGVCLTNY--QLRMDTMVNVLYYPQKPLATTRSMEYL----------- 782 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF-T 935 ++L + + AI + +DS + + + + F + Sbjct: 783 --------------KFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFRS 828 Query: 936 RDGVEKDKRALEIEEMQLKQA------KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 EK K ++ E ++ K + L+ + + K Sbjct: 829 YTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDDILIGKT 888 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 LP D EE + + ++ + ++ + ++ + Sbjct: 889 APLPEDS--------EELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGE----GNMF 936 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 VK+ + R Q GDK A RHG KG I EDMP+ G DI++NP +PSRM I Sbjct: 937 VKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTI 996 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 G ++E L + G + +A + V + + ++ Sbjct: 997 GHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQSRG--------------- 1041 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 ++ G TG + + V G Sbjct: 1042 --------------------------------FEVLYHG-------HTGRKLQAQVYFGP 1062 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 Y +L H+VDDK+HAR+ G ++T+QP+ G+++ GG RFGEME + ++G A L+E Sbjct: 1063 TYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKE 1122 Query: 1290 MLTVKSD----DVNGRTK------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 + SD V + + +P + +L +E++++ Sbjct: 1123 RMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQAM 1182 Query: 1334 GINIELEDE 1342 I + E Sbjct: 1183 NIACRMYGE 1191 >UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax=Embryophyta RepID=RPOB_ANGEV Length = 1070 Score = 566 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 260/821 (31%), Positives = 413/821 (50%), Gaps = 23/821 (2%) Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI- 274 + + + I+ + +P L +F I +V + + R + Sbjct: 78 SDLYVPAQLMRRRNGRIQRQTVHFGSIP--LMNSQGTFVINGIARVVINQILRSPGIYYD 135 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE 334 +L+ + + + G + + + + + ++ L G + Sbjct: 136 SELDHNGNSIYTGTIISDWGGRFKSEIDGKKR--IWVRLSKNRKVSIIILLLAMGLNMND 193 Query: 335 TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSE 392 L + + + A+VE+Y+ + G ++ + FF + Sbjct: 194 ILKNVRYPNIFLRLFQRQAENIQSYEDAIVELYKNLYSAGGNLVFSDSICKELQTKFF-Q 252 Query: 393 DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR 452 +++L GR N+ L + +L D++ + LI + G G +DDID L NRR Sbjct: 253 QKFELGQFGRRNLNKKLNLDVPGNEHLLLPQDLLAAVDYLIGVNYGIGTLDDIDDLKNRR 312 Query: 453 IRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 +RSV ++ Q + L R+E +++ + + P+ +I + P++ ++FFGS Sbjct: 313 VRSVADLLREQLGLALDRLEILIRQTIHTVARRKRLVTPKGLITSAPLTTIFQDFFGSHS 372 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 LSQF+DQ NPL+E+THKRR+S+LGPGGLTR A F+VRD++P+HYGR+CPIET EG N G Sbjct: 373 LSQFLDQTNPLAELTHKRRLSSLGPGGLTRRTASFQVRDINPSHYGRICPIETSEGMNAG 432 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV 630 LI SL+++A+ N+ G L +P+ K++ + + I YLS+ E+ Y IA N+ + Sbjct: 433 LIASLAIHAKVNDRGSLLSPFYKISKTLGEEHIVYLSSEEDEYYRIATGNTLSLDREIRE 492 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 E R + E + Q+ + + Q S+G SLIPFLEH+DANRALMG+NMQRQAV Sbjct: 493 ERATPARYRQEFLTIAWKQIHFRSIFPFQYFSIGTSLIPFLEHNDANRALMGSNMQRQAV 552 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 P + +K +VGTG+E +A+DSG V+ + G + Y+D I I + Sbjct: 553 PLSQPEKCIVGTGLESQIALDSGSVVVSNQDGQIAYLDGETISILL-------QNEKTVD 605 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y RSN NTCI+Q P VS GE + +G +LADG +T GELALG+N+ VA+MPW GY Sbjct: 606 IKSIIYERSNNNTCIHQRPVVSQGERLRKGQLLADGTATVGGELALGRNILVAYMPWEGY 665 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 NFED++L+SER++ ED +T+ HI+ T GPE+IT +IP++ L LD +G+ Sbjct: 666 NFEDAVLISERLIYEDIYTSFHIERYEINIYTTSQGPEKITKEIPHLDSYVLRHLDNNGL 725 Query: 871 VYIGAEVTGGDILVGKVTPKGETQL--TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 V G+ V GD+LVGK+TP+ PE KLL+AI G + ++ ++S L+VP G G V Sbjct: 726 VVPGSWVETGDVLVGKLTPQEAENSLRVPEGKLLQAISGIQLANTRESCLKVPIGGRGRV 785 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 IDV+ + + + + Q +K + G + +L + Sbjct: 786 IDVRWI--YDEDTLPNIANMVHVYILQKRKIQVGDKVAGRHGNKGIVSKILPRQDMPY-L 842 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL 1029 D P D L L + N + +K Sbjct: 843 QDGTPVDMIL-SPLGVPSRMNVGQIFECLLGLAGDILKKHY 882 Score = 322 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 156/518 (30%), Positives = 244/518 (47%), Gaps = 66/518 (12%) Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 ++ +I + I + + + +V G + G +L G Sbjct: 588 YLDGETISILLQNEKTVDIKSIIYERSNNN-TCIHQRPVVSQGERLRKGQLLADGTATVG 646 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 +L +L A + + +D+ L +S +I ++T +E+ + + Sbjct: 647 -GELALGRNILVAYMPWEGYNFEDAVL-----ISERLIYEDIYTSFHIERYEINIYTTSQ 700 Query: 952 QLKQAKKDL----SEELQILEAGLFSRIRAVLVAGGVEAEKLDK--------LPRDRWLE 999 ++ K++ S L+ L+ + + G V KL +P + L+ Sbjct: 701 GPEKITKEIPHLDSYVLRHLDNNGLVVPGSWVETGDVLVGKLTPQEAENSLRVPEGKLLQ 760 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + + L + + +D P + +V VY+ KR+ Sbjct: 761 AISGIQLANTRESCLKVPIGGRGRVIDVRWIYD-------EDTLPNIANMVHVYILQKRK 813 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 IQ GDK+AGRHGNKG++SKI P +DMPY ++GTPVD++L+PLGVPSRMN+GQI E LG+ Sbjct: 814 IQVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMILSPLGVPSRMNVGQIFECLLGL 873 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 A + ++ + + + A + Sbjct: 874 AGDILKKHYRITPFDERYEREASRKLVFSELHEASQEAAIP------------------- 914 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 L + G+ RL DGRTG+ FE+PVT+G YM+KL H V Sbjct: 915 --------------------WLFEPDHPGKSRLIDGRTGDIFEQPVTIGKAYMMKLIHQV 954 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS+G Y+LVTQQPL G+++ GGQR GEMEVWALE +G +Y LQEMLT+KSD + Sbjct: 955 DDKIHARSSGPYALVTQQPLRGRSRGGGQRVGEMEVWALEGFGVSYILQEMLTIKSDHIP 1014 Query: 1300 GRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 R+K+ +IV G +P +PESF +L++E+RSL +N Sbjct: 1015 ARSKLLGSIVTGKSIPKPNTVPESFRLLVRELRSLAVN 1052 Score = 150 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 130/343 (37%), Gaps = 29/343 (8%) Query: 16 GKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSY 73 + ++ +P IQ + FQ+FI QD L + I+ E + Y Sbjct: 4 KENKKMFVLPEFGRIQFEGFQRFIHQD------LVEELTNFPKIEDIDQEVEFRLFGERY 57 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 RL EP ++ + TYS+ L V +L+ I+ Q V+ G IPLM Sbjct: 58 RLTEPCIKERDAVYQSFTYSSDLYVPAQLM-------RRRNGRIQRQTVHFGSIPLMNSQ 110 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GTFVING RV+++Q+ RSPG+++DS+ +G +Y II G E D K Sbjct: 111 GTFVINGIARVVINQILRSPGIYYDSELD---HNGNSIYTGTIISDWGGRFKSEIDGKKR 167 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLF--FEKVIFEIRDNKLQMELVPERLRGETA 251 ++VR+ + RK+ I+L A+ IL + + ++ + + Sbjct: 168 IWVRLSKNRKVSIIILLLAMGLNMNDILKNVRYPNIFLRLFQRQAENIQSYEDAIVELYK 227 Query: 252 SFDIEANGKVYVEKGRR-ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + V+ + + + + +Q + K + D E + Sbjct: 228 NLYSAGGNLVFSDSICKELQTKFFQQKFELGQ-----FGRRNLNKKLNLDVPG---NEHL 279 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 L+ G ++ + +++ LR Sbjct: 280 LLPQDLLAAVDYLIGVNYGIGTLDDIDDLKNRRVRSVADLLRE 322 >UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax=Heterosigma RepID=RPOB_HETCA Length = 1116 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 307/855 (35%), Positives = 444/855 (51%), Gaps = 45/855 (5%) Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 I L A + +K E K+ + +P L T SF + Y + Sbjct: 77 VRIFLPAEVIYCDTESKYPTKKNRLEDIKEKVFIGQIP--LMTSTGSFIVNGCEG-YRNQ 133 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 R + + ++ + V IA + + + G + E + + L Sbjct: 134 IIRCPGLYYKAEFLNNNIVSTVT--IIAQRGSWLKFEFDKNGY-WVRIDKEKKISIFDFL 190 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 E L I+ L+ T +++ P + Sbjct: 191 EGLNINDEEILSGL-----KSIAPLLKYKKTQ----------EILKRNNDPDLKNLIEKI 235 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 + Y L +GR+ NR L L+ DI ++ + R+ DDI Sbjct: 236 ----TDPNSYSLGIIGRLNLNRRLGLNISTRVHTLTIHDIFGIIDFFLSARS--FVPDDI 289 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEF 505 D L NRRIR+VGE+ +Q +GL R+ER + ER + ++P+ ++NA+PI +A++EF Sbjct: 290 DDLRNRRIRAVGELITSQCEIGLNRLERNILERTNFSGSVRILPKTLVNARPIMSAIQEF 349 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 F SSQLS +MDQ N LSE +KRRISALGPGGL +R RD+HPT YGR+CPIETPE Sbjct: 350 FNSSQLSHYMDQTNLLSETANKRRISALGPGGLNADRVTVAARDIHPTQYGRLCPIETPE 409 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNL 623 G N+GL+++L+ YA+ N GF++TPY +V +G + + YL+A +E IA A+ Sbjct: 410 GQNVGLVSTLASYARINRNGFIQTPYFRVENGKILTQQPLIYLTAEQENLK-IAPADVKR 468 Query: 624 DEEGHFVEDLVTCRSKGE-SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 D++G+ V+D + R + + + VD++ VS Q++SV ASLIPFLEHDDANRALMG Sbjct: 469 DQDGYLVDDFIVTRFQSKNFIITPSKLVDFISVSEIQIISVAASLIPFLEHDDANRALMG 528 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 ANMQRQAVP L KP+VGTG+E VA DS + +A + G+V+YV + +I IK E E Sbjct: 529 ANMQRQAVPLLYPRKPIVGTGIESQVAFDSRLVNIATKPGIVKYVSSQQIDIKNIEGEK- 587 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 Y L KY SNQ+TC+NQ P V +G+ ++ G V+ADGP T GELALGQN+ V Sbjct: 588 ------IAYKLIKYRPSNQDTCLNQRPLVWVGQSIKTGQVIADGPGTQSGELALGQNLTV 641 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 A+MPW GYN+ED+ILVS+++ ++ FT+IHI+E + TK G + IT+DIP V E Sbjct: 642 AYMPWQGYNYEDAILVSDKLDIQNLFTSIHIEECETEVQQTKTGEQVITSDIPLVSEKNC 701 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 LDE+GI+ +G V GDILVGK+TPKGE PE KLL+AIFG K D++DSSLRVP Sbjct: 702 KNLDENGIIKVGKYVYPGDILVGKITPKGEIDQLPEAKLLKAIFGFKTPDMRDSSLRVPG 761 Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 G+SG V+D+++F + K + + Q K + G I +L Sbjct: 762 GLSGRVLDIKIFKKPKPGKVFGVGSKIRVFIAQISKLQVGDKIAGRHGNKGVISRILPHQ 821 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + D D L L + N + + K+ KI D++ Sbjct: 822 DMPF-LPDGTSVDIILN-PLGVPSRMNVGQIFECLLGLAGDQLNKRF-----KILPFDEM 874 Query: 1043 APGVLKIVKVYLAVK 1057 + + +K Sbjct: 875 YQNEASRILINQKLK 889 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 78/371 (21%), Positives = 133/371 (35%), Gaps = 33/371 (8%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS-GNSELQYV--SYRLGEPV 79 +P L IQ SF F+ GL S+ PI + +L+ + L Sbjct: 9 KLPDFLEIQRSSFCWFL------LKGLSYELNSLSPIIDVNVKRVKLKLYPQEFVLKPGR 62 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK---DIKEQEVYMGEIPLMTDNGTF 136 + TY + + ++ + E+ T K + +++V++G+IPLMT G+F Sbjct: 63 TTPICAKQNDSTYGVRIFLPAEVIYCDTESKYPTKKNRLEDIKEKVFIGQIPLMTSTGSF 122 Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 ++NG E +Q+ R PG+++ ++ + ++ II RGSWL FEFD K+ +V Sbjct: 123 IVNGCE-GYRNQIIRCPGLYYKAE----FLNNNIVSTVTIIAQRGSWLKFEFD-KNGYWV 176 Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 RID+ +K+ L LN E+IL E L+ Sbjct: 177 RIDKEKKISIFDFLEGLNINDEEILSGLKSIAPLLKYKKT------QEILKRNNDPDLKN 230 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 K + R + L I+ +V D + Sbjct: 231 LIEK-ITDPNSYSLGIIGRLNLNRRLGL------NISTRVHTLTIHDIFGIIDFFLSARS 283 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 D + L + + L T+ + G ++ R S V I P Sbjct: 284 FVPDDIDDLRNRRIRAVGELITSQCEIG--LNRLERNILERTNFSGSVRILPKTLVNARP 341 Query: 377 TREAAESLFEN 387 A + F + Sbjct: 342 IMSAIQEFFNS 352 >UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=A8B827_GIALA Length = 1235 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 188/1284 (14%), Positives = 397/1284 (30%), Gaps = 203/1284 (15%) Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 +I ++++ + S + L D Sbjct: 72 IIKHAPAIVINLSTSKAIKVEIVNLTIKPPSFTPAFARETRANYCGPLHVTLKVSDGPMS 131 Query: 197 R--IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ-------MELVPERLR 247 + + +P + + + + + + L + L Sbjct: 132 KTVVINAGDVPVMVGSKLCLLHGKTREERIRLREDERDAGGYFISNGQDKVVRLYLDCLS 191 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 +F + H + + +D V + K ID Sbjct: 192 NTPLAFTKYRSLSTI--SEFAPAGVHYKGVREDGHVYSTVIQARKDNFLSVKFTID---- 245 Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP--TNDRLSALVE 365 + + L+ L + +++ + + + R+ A++ Sbjct: 246 ------GRYIYVPLILVLRALVSTTDKEIYSTI---CTICASAHPKEDGYVSLRVEAMLR 296 Query: 366 IYRMMRPGEPPT-REAAESLFENLFFSEDRYDLSAVGRMKF--NRSLLREEIEGSGILSK 422 + R ++ F + DRYDL+ V + LL + Sbjct: 297 DFHKYRIFSHKACKQLLGGKFRMILSLLDRYDLTDVDCCDLLFEQYLLINIPKEDTRAKF 356 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + + + +K + + + D D L ++ + G + + L+++ R V + Sbjct: 357 NMMCLMARKCLLLFGSFIKPDSPDLLSSQEALTPGAFFKAEVTSTLIKIMRLVSRNATST 416 Query: 483 ------DLDTLMPQDMINA----KPISAAVKEFFGSS--------------QLSQFMDQN 518 +L I + +P+S+ ++ G LS D+ Sbjct: 417 GAIGSYELSNSWISHYIASPKLWRPLSSGLRSLAGPGVMRAYKGHDYSNMSGLSVLADRI 476 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 N + + H R + G +R ++P YG C + TP+G G++ L Sbjct: 477 NYVRFLAHFR---CINRGNAFATHKITSIRKLYPESYGFQCAVHTPDGAPCGILTHLCYK 533 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL------DEEGHFVED 632 A T ++ S + + + + L + V Sbjct: 534 ATV-LSSTPTTDQIANLFILLAQFGLSPSLSDIYSLCVVLNGTILGYLDTNERAIQLVAC 592 Query: 633 LVTCRSKGESSLFSRDQVDYMD-------VSTQQVVSVGASLIPFLEHDDANRALMGANM 685 + + K +F +V +++ + + + N + Sbjct: 593 IRAAKVKS--IIFPYTEVVFIEKGNKDHLFPGIYMNTSMGRFYRPVHSLTNNSPEYITPL 650 Query: 686 QRQAV-PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 ++ + + D +G + + S ++ + +V + D ++ + E +M Sbjct: 651 EQIFLQIAIYGDDVRLGVTTHQEITPTSLLSILGL---LVPFSDHNQSPRNMYECQMLKQ 707 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 GI NL + + + + P +P+ R ++ D G N+ VA Sbjct: 708 TMGIPCRNLAY--KYDTKSYLLTTPQ----KPLVRNAIIHDIGG--FDTHPTGTNLVVAV 759 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD----------- 853 + Y+ ED+ L+++ ++ F D KL T Sbjct: 760 SAYTSYDMEDAALINKASLERGLFHGTVYSVHDIDCYDDKLMRYMRTVATAVPYLKRSPD 819 Query: 854 --IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 + ++ E ++LDE G+ +GA ++ G + + Sbjct: 820 YIVTHMDENYDTELDEDGLPPVGAYLSHGSV----------------------FYQTYDP 857 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGL 971 + S ++ + G V V V + + + + Sbjct: 858 TKQCYSTKLYHHEPGFVEKVIVIHKSAAKGEYWT--------------------DNDIAT 897 Query: 972 FSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 + + AG + LD D + + N+ Q A E+K Sbjct: 898 KKKRDSSFPAGDSNSSNLDNDASDDEISNQPGSGSESNEDNQTATPRSHASK-AERKSSR 956 Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 + + + + + ++ V++ + R GDK+A RHG KG++ DMP+ +G Sbjct: 957 QLQTRARTESSSLHFIQRVRIVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTDMPFTSSG 1016 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 D+++NP PSRM +G ++E+ D +++ Q + + + Sbjct: 1017 IVPDLIINPHAFPSRMTVGMLIESLASKIGVHYADFVDSSPFQWSDERRAIDVFGE---- 1072 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 +LLK G G Sbjct: 1073 ---------------------------------------------QLLKTGQFNRYGSEV 1087 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 +Y TG+ + +G +Y +L H+V DK R+ G +T+QP+ G+ + GG RFG Sbjct: 1088 MYSAITGDPMPADIFIGVVYYQRLRHMVSDKYQVRAEGPSDKITKQPIKGRKRGGGLRFG 1147 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK----------MYKNIVDGNHQMEP 1317 EME AL A+GA +L+ L +SD V + + H Sbjct: 1148 EMERDALLAHGAMASLRGRLCTESDATEHVVCAACGSLLGMQLGGSVCRECKATGHGRLI 1207 Query: 1318 GMPESFNVLLKEIRSLGINIELED 1341 +P VL ++ ++G+ + Sbjct: 1208 QIPMVLLVLANDLAAMGVRMRFNV 1231 Score = 73.8 bits (179), Expect = 4e-11, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 21/139 (15%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGNSELQYVSYRLGEPVFDVQE 84 +S ++SF FI+ + I S S +++ V+ + P F Sbjct: 54 VSAHVNSFNDFIDSLNTT------IIKHAPAIVINLSTSKAIKVEIVNLTIKPPSFTPAF 107 Query: 85 CQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT--- 141 + Y PL V L++ K + G++P+M + +++G Sbjct: 108 ARETRANYCGPLHVTLKV---------SDGPMSKTVVINAGDVPVMVGSKLCLLHGKTRE 158 Query: 142 ERVIVSQLHRSPGVFFDSD 160 ER+ + + R G +F S+ Sbjct: 159 ERIRLREDERDAGGYFISN 177 >UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeota RepID=B5IGJ5_9EURY Length = 1201 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 213/1368 (15%), Positives = 430/1368 (31%), Gaps = 218/1368 (15%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 +L +++ + S+ I ++ + + + + G Sbjct: 4 IVDILFKKSVVNHHIASYNDLIPTPDNPNSVMQEIVDTT-KVTDEDPPGVITLDRTKTGG 62 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 + + Y +R+ E + G I E + ++ Sbjct: 63 KTIKIVFGRNND--YWDVNEPTIRIGRPEIKEATGATVQITPMEARLRDL--------SY 112 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 + I G + Sbjct: 113 LAPLYLKIKVLECDDAGCYEREP------------------------------------E 136 Query: 198 IDRRRKLPATIILRALNYTTEQI---LDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + + P + + + I LD + K ++E V E F Sbjct: 137 MVKIGDFPVMVKSKICTLHEDNIDDYLDSISKDKDILNWPYKQKLEYVGEDPDDPGGYFI 196 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV-AKDYIDESTGELICAA 313 I + +V V R + + + ++E + + A +++ + +I + Sbjct: 197 IGGSERVLVSLEDLAPNRVLVEKNERYNTVVETAKVFSQRRGYRALTIMEKKSDGIIVVS 256 Query: 314 NMEL--SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + ++ L+ + G ++ + ++ + L VE ++ Sbjct: 257 VPAVAGTIPLVILMKALGLEKDQDIYRAIVSDEKMSVIALANIEE-------VENDKLYP 309 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EIEGSGILSKDDIIDV 428 P T+ A E F + + + S L + I + + Sbjct: 310 PNGIRTQRDAIEYLEKRFAAGQAKEYREKKISQILDSSLLPHLGTSKEDRIKKAYYLGRM 369 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDT 486 ++++++ G + DD DHL N+R++ G++ E FR+ + + +K +L Sbjct: 370 ARRVLELHLGLRKEDDKDHLANKRLKLSGDLLEELFRMAFEALMKDLKYQLERTYNRKKG 429 Query: 487 LMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPGGLT 539 + + I ++ + + SQ +D+ + +S ++H RR+ + LT Sbjct: 430 IRIRVSIRQDVLTQKIMHAMSTGNWVGGRTGVSQLLDRTSHMSTLSHLRRVIS----PLT 485 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 R + FE RD+HPT +GR+CP ETPEG N GL+ + ++ +E G+ E K+ G+ Sbjct: 486 RSQPHFEARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSE-GYPEEDVLKILKGLG 544 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 +E Y + Y+ + ++ + R KG S + D + Sbjct: 545 VEERQYETGELARVYLNGNLVGYHKDGLALTNEIRSRRRKGLISHQINIRYDDT-TNEVM 603 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA-VA 718 + S + L + + + + LV G+ + + A +A Sbjct: 604 INSDKGRIRRPLLVVENGNVKYTSRHRELLRRGKMDIEDLVREGVVEWIDAEEEENAYIA 663 Query: 719 KRGGVVQ--YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 V R++ + + + M PGE C + Sbjct: 664 VYAYDVPERCPHCGRVLGRNDVEWMNPGEGEKVTLRCKH--------CGAEFGVEKKITK 715 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF-TTIHIQE 835 L P LG +P+ +N I + ++++ + + Sbjct: 716 EH--THLEIDPLLILG-------AVAGCVPYPHHNSSPRITMGAAMLKQSLGLPAANYRR 766 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 R G P V + ++ + Sbjct: 767 -----RPDTRGHLLHYPQAPIVRTKTMDFVN-------------------------FMRR 796 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR----ALEIEEM 951 + + AI +++D+ + V F E+ + + E Sbjct: 797 PAGQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRYPGGQEDKFEIP 856 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + ++L+ + G V K Sbjct: 857 SPDVRGAMTEDRYKLLDEDGLISPEVYVKGGDVLIGKTSPPRFLEE-------------E 903 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 +L + + E + + ++ ++VKV + +R + GDK A RHG Sbjct: 904 SELLGPQKRRESSVTMRPEEEGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHG 963 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 KGV+ I P EDMP+ E+G D++ + H + +G + Sbjct: 964 QKGVVGAIIPQEDMPFTESGIIPDLI---------------INPHAIPSRMTVGHIL--- 1005 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 E++ +G + VF G Sbjct: 1006 ------------------------------------EMIGGKVGSLEGRFVDGTVFSGEP 1029 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSY 1251 E ++E L +G+ +YDG TG + E + VG +Y KL+H+V K HARS G Sbjct: 1030 EKALREALVKNGFKYNGKEIMYDGITGRKIEAEIFVGVIYYQKLHHMVAGKFHARSRGPV 1089 Query: 1252 SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK-------- 1303 ++T+QP G+++ GG RFGEME L +GAA +++ L SD Sbjct: 1090 QILTRQPTEGRSRLGGLRFGEMERDTLIGHGAAMVIKDRLLDNSDGTVLYVCGNPECGHI 1149 Query: 1304 ----------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + + +F ++ E+ SLG+ + ++ Sbjct: 1150 AMFDRKRGILRCPVCGNTTNIYPIETSYAFKLMHDELASLGVIMRMKV 1197 >UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 Tax=cellular organisms RepID=RPOB_ARATH Length = 1072 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 260/828 (31%), Positives = 423/828 (51%), Gaps = 25/828 (3%) Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI-RQLEKDDVKLI 285 K +++ ++ + +P L + + ++ + + + + +L+ + + + Sbjct: 89 KTSRNMQEQRIFIGNIP--LMNSLGTSIVNGIYRIVINQILQSPGIYYQSELDHNGISVY 146 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + G + + ++ + ++S+ +L+ + I + Sbjct: 147 TGTIISDWGGRLELEIDKKARIWARVSRKQKISILVLSSAMGLNLREILE-NVCYPEIFL 205 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 + +A++E Y+ G+P E+ + FF R +L +GR Sbjct: 206 SFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFSESLCKELQKKFFH-QRCELGRIGRR 264 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 N L + + L DI+ LI ++ G G +DD++HL N+RIRSV ++ ++Q Sbjct: 265 NINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQ 324 Query: 464 FRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL 521 + L R+E VK + L PQ+++ + P++ + FFG LSQ +D+ NPL Sbjct: 325 LGLALARLENVVKGTIGGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPL 384 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 ++I H R++S LGPGGLT A F +RD+HP+HYGR+CPI+T EG N+GLI SLS++A+ Sbjct: 385 TQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGRICPIDTSEGINVGLIGSLSIHARI 444 Query: 582 NEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 ++G LE+P+ ++ + I +LS ++ Y+IA NS G E V R + Sbjct: 445 GDWGSLESPFYELFEKSKKARIRMLFLSPSQDEYYMIAAGNSLALNRGIQEEQAVPARYR 504 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 E + ++V + Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K + Sbjct: 505 QEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCI 564 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 VGTG+ER VA+DSGV A+A+ G + Y D +IV G L Y RS Sbjct: 565 VGTGLERQVALDSGVPAIAEHEGKILYTDTEKIV--------LSGNGDTLSIPLIMYQRS 616 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 N+NTC++Q P V G+ +++G +LADG +T GELALG+N+ VA+MPW GYNFED++L+S Sbjct: 617 NKNTCMHQKPQVRRGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNFEDAVLIS 676 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 E +V D +T+ HI++ + T GPE IT +IP++ L LD++GIV +G+ V Sbjct: 677 ECLVYGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRNLDKNGIVMLGSWVET 736 Query: 880 GDILVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GDILVGK+TP+ E+ PE++LLRAI G + S K++ L++P G G VIDV+ + Sbjct: 737 GDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKK 796 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 G EI + + Q ++ + G I +L + D P D Sbjct: 797 GGSSYNP--EIIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPY-LQDGRPVDMV 853 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 L + N + ++ + + Sbjct: 854 FN-PLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRK 900 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 131/334 (39%), Gaps = 28/334 (8%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVFD 81 +P IQ + F +FI+Q GL I+ E Q +Y+L EP+ Sbjct: 12 IPGFNQIQFEGFYRFIDQ------GLIEELAKFPKIEDIDHEIEFQLFVETYQLVEPLIK 65 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 ++ +TYS+ L V L+ T ++++EQ +++G IPLM GT ++NG Sbjct: 66 ERDAVYESLTYSSELYVSAGLIW-------KTSRNMQEQRIFIGNIPLMNSLGTSIVNGI 118 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R++++Q+ +SPG+++ S+ +G +Y II G L+ E D K ++ R+ R+ Sbjct: 119 YRIVINQILQSPGIYYQSELD---HNGISVYTGTIISDWGGRLELEIDKKARIWARVSRK 175 Query: 202 RKLPATIILRALNYTTEQILDLFFEKV---IFEIRDNKLQMELVPERLRGETASFDIEAN 258 +K+ ++ A+ +IL+ F K ++ + F Sbjct: 176 QKISILVLSSAMGLNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQF----- 230 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 V + ++L+K + + ++ + L+ Sbjct: 231 --SCVGGDPIFSESLCKELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILA 288 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 + G ++ + +++ L+ Sbjct: 289 AADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQ 322 >UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 Tax=Streptophyta RepID=RPOB_VITVI Length = 1070 Score = 554 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 264/889 (29%), Positives = 440/889 (49%), Gaps = 25/889 (2%) Query: 164 THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDL 223 + LY I ++F+ + V + + L + + Sbjct: 28 DQGLTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTY--SSELYVSAG 85 Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR-QLEKDDV 282 K ++++ + + +P L + + ++ + + + + R +L+ + + Sbjct: 86 LIWKTSRDMQEQTIFIGNIP--LMNSLGTSIVNGLYRIVINQILQSPGIYYRSELDHNGI 143 Query: 283 KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD 342 + + G + + ++ + ++S+ +L+ S + I + Sbjct: 144 SVYTGTIVSDWGGRLELEIDRKARIWARVSRKQKISILVLSSAMGSNLREILE-NVCYPE 202 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAV 400 + SA++E Y+ G+P E+ + FF + R +L + Sbjct: 203 IFLSFLNDKEKKKIGSKESAILEFYQQFACVGGDPVFSESLCKELQKKFF-QQRCELGRI 261 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 GR NR L + + + L DI+ LI ++ G G +DD++HL N+RIRSV ++ Sbjct: 262 GRRNINRRLNLDIPQNNTFLLPQDILAAADHLIGMKFGMGILDDMNHLKNKRIRSVADLL 321 Query: 461 ENQFRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 ++QF + L+R+E V+ + L PQ+++ + P++ + FFG LSQ +D+ Sbjct: 322 QDQFGLALIRLENVVRGTICGAIRHKLIPTPQNLVTSTPVTTTYESFFGLHPLSQVLDRT 381 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL++I H R+ S LGPGGLT A F +RD+HP+HYGR+CPI+T EG N+GLI SL+++ Sbjct: 382 NPLTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIH 441 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 A+ +G LE+P+ ++++ + YLS + Y++A NS +G E +V R Sbjct: 442 ARIGHWGSLESPFYEISERSKKVRMLYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARY 501 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + E + +QV + Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K Sbjct: 502 RQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKC 561 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 +VGTG+ER A+DSGV +A+ G + Y D +I + G L Y R Sbjct: 562 IVGTGLERQAALDSGVPVIAEHEGKIVYTDTDKI--------ILSGNGDTLSIPLVMYQR 613 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 SN+NTC++Q V G+ +++G +LADG +T GELALG+N+ VA+MPW GYN ED++L+ Sbjct: 614 SNKNTCMHQKAQVRRGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLI 673 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 SER+V D +T+ HI++ + T GPE IT IP++ L LD++GIV +G+ V Sbjct: 674 SERLVYGDIYTSFHIRKYEIQTHVTSQGPERITNKIPHLEAHLLRNLDKNGIVILGSWVE 733 Query: 879 GGDILVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 GDILVGK+TP+ E+ PE++LLRAI G + S K++ L++P G G VIDV+ + Sbjct: 734 TGDILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQK 793 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 G E + + Q ++ + G I +L + D P D Sbjct: 794 KGGSSYNP--ETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPY-LQDGRPVDM 850 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 L + N + ++ + + Sbjct: 851 VFN-PLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDEKYEQEASRK 898 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 19/229 (8%) Query: 16 GKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSY 73 G + +P IQ + F +FI+Q GL I+ E Q +Y Sbjct: 4 GGNEGMSTIPGFNQIQFEGFCRFIDQ------GLTEELYKFPKIEDTDQEIEFQLFVETY 57 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 +L EP+ ++ +TYS+ L V L+ T +D++EQ +++G IPLM Sbjct: 58 QLVEPLIKERDAVYESLTYSSELYVSAGLIW-------KTSRDMQEQTIFIGNIPLMNSL 110 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GT ++NG R++++Q+ +SPG+++ S+ +G +Y I+ G L+ E D K Sbjct: 111 GTSIVNGLYRIVINQILQSPGIYYRSELD---HNGISVYTGTIVSDWGGRLELEIDRKAR 167 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLF-FEKVIFEIRDNKLQMEL 241 ++ R+ R++K+ ++ A+ +IL+ + ++ ++K + ++ Sbjct: 168 IWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKI 216 >UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bilateria RepID=Q7Q416_ANOGA Length = 1089 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 188/1254 (14%), Positives = 370/1254 (29%), Gaps = 261/1254 (20%) Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPAT 207 Q S F + D K + + + + + +L+ D + + P Sbjct: 36 QHIDSFNYFINVDIKKIVQANQEVKSDADPCFYLKYLNVHVGKPDVEEGFNNTKSTTPHE 95 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET----------------- 250 LR + Y+ +D+ + + + N L + +P LR Sbjct: 96 CRLRDMTYSAPITVDIEYTRGTQRVVRNGLLIGRMPIMLRSSNCVLTGKSDYQLSKVNEC 155 Query: 251 -----ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 F I KV + + + + I +D +I+ V + ++ + Sbjct: 156 PMDPGGYFIIRGTEKVILIQEQLSWNKMI---TEDYNGVIQCQVTSSTHEKKSRTILLTK 212 Query: 306 TGELICAAN----MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV---DPTND 358 G N +L + + + I L D + + +L Sbjct: 213 HGRYYLKHNSMTEEIPVAIILKAMGIASDQEIMQLVGIDPETQKRFAPSLLEAANHKVFT 272 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + AL + + R + E R L+ + Sbjct: 273 QQRALEYMGSKL----IAKRFTTAATKYKTTADEARDLLATTILAH------VPVPSFNF 322 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK-- 476 + + ++++++ + VDD D+ GN+R+ G + F R +K Sbjct: 323 QVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKMI 382 Query: 477 --ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEITHKRRIS 531 + + + I+A ++ + + M++ ++ IS Sbjct: 383 ADKNIPKIKAAQFDVGKHMREALITAGLETAISTGNWTIKRFKMERAGVTQVLSRLSYIS 442 Query: 532 ALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 ALG + R R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 443 ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTE-V 501 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVI--AQANSNLDEEG----HFVEDLVTCRSKG 640 E P ++ ++I L N + N N+ VE R +G Sbjct: 502 DEEPVIRLAYNAGVEDIRLLGGETINNPKVFMVFINGNILGVTIAYRRLVEVFRMMRRRG 561 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 F + + + R + R + + Sbjct: 562 LIGAFVSIHTSFTQ----------RCVYIHTDGGRLCRPYIIVQAGRPLYLDVNEEND-- 609 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 + Y + K E+ P L Y Sbjct: 610 ---------------------SFIAYQERDIDPEKTTHLEIEPFTLLGVCAGLVPYPHH- 647 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 NQ P + +G+ A+G + +N N D+++ + Sbjct: 648 -----NQSPR--------------NTYQCAMGKQAMG------IIGYNQKNRIDTLMYN- 681 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + P V + + + Sbjct: 682 ----------------------------IVYPQSPMVRSRTIELTNFDKLPA-------- 705 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 + A+ D++D +++ R Sbjct: 706 -----------------GQNATVAVMSYSGYDIED----------ALILNKASIDRGYGR 738 Query: 941 --KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 K + + Q + ++ G L G+ + + + Sbjct: 739 CLVYKNSKCTIKRYSNQTFDRIMGPMKDGVTGKIIAKHECLDTDGIVSPGERLTCKQTMV 798 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 + + ++ + + + R ++ ++ +VK+ L R Sbjct: 799 NKEMP-------AVKSNNPIEQKESGQQPIAYSARVLVSTNNEEE----FLVKILLRQTR 847 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 R + GDK + RHG KGV I ED+P+++ G D ++ H Sbjct: 848 RPEIGDKFSSRHGQKGVTGLIVEQEDLPFNDYGMSPD---------------MVMNPHGF 892 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 + +G + E++ + + Sbjct: 893 PSRMTVGKTL---------------------------------------ELLGSKAGVLE 913 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 G F G+K +++++ L G+ Y G TGE E + G +Y KL H+ Sbjct: 914 GKFHYGTAFGGSKCSDLQDELFNHGFNYLGKDVFYSGITGEPLEVYIYSGPVYYQKLKHM 973 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD-- 1296 V DKMHAR+ G +++T+QP G+++ GG R GEME L +YGA+ + E L + SD Sbjct: 974 VQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAF 1033 Query: 1297 --DVNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 DV N MP + +L +E+ S+ I L+ + Sbjct: 1034 DVDVCNVCGRLAYSSWCHNCRSSASVSTISMPYACKLLFQELTSMNIVPRLKLQ 1087 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 69/441 (15%), Positives = 142/441 (32%), Gaps = 50/441 (11%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLS-IQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG 64 ++ + DFG ++ + ++ +DSF FI D + +S Sbjct: 11 PPVEKQKPDFGLSGKLTEETNKVNGQHIDSFNYFINVDIKKIVQANQEVKS-----DADP 65 Query: 65 NSELQYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKL-------------- 100 L+Y++ +G+P EC++R +TYSAP+ V + Sbjct: 66 CFYLKYLNVHVGKPDVEEGFNNTKSTTPHECRLRDMTYSAPITVDIEYTRGTQRVVRNGL 125 Query: 101 ---RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF 157 R+ I R + Q + E P M G F+I GTE+VI+ Q S Sbjct: 126 LIGRMPIMLRSSNCVLTGKSDYQLSKVNECP-MDPGGYFIIRGTEKVILIQEQLSWNKMI 184 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-T 216 D + S ++P IIL+A+ + Sbjct: 185 TEDYNGVIQCQVTSSTH----EKKSRTILLTKHGRYYLKHNSMTEEIPVAIILKAMGIAS 240 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 ++I+ L + R +E ++ + + + + K+ ++ ++ Sbjct: 241 DQEIMQLVGIDPETQKRFAPSLLEAANHKVFTQQRALEYMGS-KLIAKRFTTAATKYKTT 299 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA-ANMELSLDLLAKLSQSGHKRIE- 334 ++ L + ++ +I EL + G+KR+E Sbjct: 300 ADEARDLLATTILAHVPVPSFNFQVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLEL 359 Query: 335 ------TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENL 388 +F + + + + +A ++ + MR E E+ Sbjct: 360 AGSLLSLMFEDLFKRFNWELKMIADKNIPKIKAAQFDVGKHMR--EALITAGLETAISTG 417 Query: 389 FFSEDRYDLSAVGRMKFNRSL 409 ++ R+ + G + L Sbjct: 418 NWTIKRFKMERAGVTQVLSRL 438 >UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota RepID=C8VU19_EMENI Length = 1225 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 185/1269 (14%), Positives = 369/1269 (29%), Gaps = 235/1269 (18%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF------DPKDNLFV 196 + +V Q S + K S + + + + D D ++ Sbjct: 114 KGLVKQHIDSYNYLVEVQLKKIVESSNTIRSDVDHNFYIKFTDIYLGFPRRADEPQDVRT 173 Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET------ 250 + P LR Y +D + + +R + + +P LR Sbjct: 174 EFEESTVTPHECRLRDTTYAAPIQVDFEYIRGRQRVRRKGVSIGRMPVMLRSSKCVLGNK 233 Query: 251 ----------------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 F + KV + + + R I + + + Sbjct: 234 TPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNE 293 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN-------DLDHGPYI 347 + I + + + + ++ L G + + + Sbjct: 294 RKSKSYIILKKDRLYVKHNVLSEDIPIVILLKAMGIHTDKEMMLLVAGVDKVYQEDFAIN 353 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 E + AL I ++ + AV + Sbjct: 354 FEEAIKVGVFTQQQALDWIGSRIKINR------------KQMSYRRTHVQEAVEAIASVI 401 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 E + + + ++ ++++ +N VDD D+LGN+R+ G++ F Sbjct: 402 ISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLLALLFEDL 461 Query: 468 LVRVERAVKERL-----SLGDLDTLMPQDMI--NAKPISAAVKEFFGSSQLS---QFMDQ 517 + +K + ++ +I ++ I+ + + S M++ Sbjct: 462 FKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQGMNRAISTGNWSLKRFRMER 521 Query: 518 NNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 ++ I+ALG + R R + P+ +G +C +TPEG GL+ Sbjct: 522 AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMICLADTPEGEACGLV 581 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE---GNYVIAQANSN---LDEE 626 +L++ E P + + + ++I + E G+Y I+ + Sbjct: 582 KNLALMTHITTNDE-EGPIKNLIFMLGAEDIQTVGGKEIYAPGSYTISINGTPMALTRRP 640 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 +F+ R G S F +++ + V + + L + ++ + + Sbjct: 641 KYFLNAFRRLRRMGRISEFVSIYINHHQRAV-HVATDDGRICRPLIIVEDGKSRVKKHHL 699 Query: 687 RQAVPTLRADKPLVGTGMERAVAV-DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 R+ + G+ V V + + +A I E+ P Sbjct: 700 RKLRDGTMQFDDFLAQGLVEYVDVNEENDSLIAIYE--------KDITDTTTHMEIEPFT 751 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 + Sbjct: 752 ILG---------------------------------------------------AVAGLI 760 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 P+ +N + ++ Q L S + P V + Sbjct: 761 PYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILY----LMVYPQKPMVKSRTIELT 816 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 + + A+ D++D+ + V Sbjct: 817 KYDQLPA-------------------------GQNATVAVMSYSGYDIEDALVLNKGSVD 851 Query: 926 GTVIDVQVFTRD--GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 QVF + ++ + + +LE+ + + + AG Sbjct: 852 RGFGRCQVFRKYVTNMKSYSNGTKDILSPPTYENDAPIRKHALLESDGLAAVGEQVNAGE 911 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 V K D+ + G+ + + + K ++ Sbjct: 912 VYINKSTP---DQSMSSGMPGSDAGRPIS--YNPTPMTYKLPDPAYIDKVMISATENE-- 964 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 +I+KV RR + GDK + RHG KGV I DMP+ + G DI+ Sbjct: 965 ---NQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDII------ 1015 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 MN H + +G + Sbjct: 1016 ---MN------PHGFPSRMTVGKML----------------------------------- 1031 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 E++ + G F G ++ + L G+ L G TGE Sbjct: 1032 ----ELVAGKAGVLSGQHGYGTCFSGTPVEQMTQTLIDKGFSYGGKDYLTSGITGEALPF 1087 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V G +Y KL H+V DKMH+R+ G + +T+QP G+++ GG R GEME L AYG Sbjct: 1088 YVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGT 1147 Query: 1284 AYTLQEMLTVKSD----DVNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 + L E L + SD DV + + ++ +P + +L++E+ S+ Sbjct: 1148 SQLLLERLMISSDRHEVDVCEQCGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQELMSM 1207 Query: 1334 GINIELEDE 1342 + L+ E Sbjct: 1208 NVTARLKLE 1216 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 143/1070 (13%), Positives = 311/1070 (29%), Gaps = 218/1070 (20%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQY 70 + + P L V L+ +DS+ +E L+ S I+ N +++ Sbjct: 101 KDKWNLLPAFLKVKGLVKQHIDSYNYLVE------VQLKKIVESSNTIRSDVDHNFYIKF 154 Query: 71 VSYRLGEPV----------------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV 114 LG P EC++R TY+AP++V + Sbjct: 155 TDIYLGFPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFEYI--------RGR 206 Query: 115 KDIKEQEVYMGEIPLMTDNG------------------------TFVINGTERVIVSQLH 150 + ++ + V +G +P+M + F++NGTE+VI+ Q Sbjct: 207 QRVRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQ 266 Query: 151 RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPATII 209 S K + ++ R S + KD L+V+ + +P I+ Sbjct: 267 LSKNRIIVETDPKKEIVQASVTSSS--NERKSK-SYIILKKDRLYVKHNVLSEDIPIVIL 323 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMEL---VPERLRGETASFDIEANG-KVYVEK 265 L+A+ T++ + + + ++ + + + + + D + K+ ++ Sbjct: 324 LKAMGIHTDKEM-MLLVAGVDKVYQEDFAINFEEAIKVGVFTQQQALDWIGSRIKINRKQ 382 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 +E +I Y+ ++ A N +D L Sbjct: 383 MSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYL 442 Query: 326 SQSGHKRIETLFTNDLDH------GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 + L + +V +R+ A + T+ Sbjct: 443 GNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQG 502 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 + +S R+ + G LS + +M ++ Sbjct: 503 MNRA-ISTGNWSLKRFRMERAGVTHVLSR-----------LSYIAALGMMTRISSQFEKT 550 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-----LGDLDTLMPQDMI- 493 +V R + + + L+ + + +++I Sbjct: 551 RKVSGP------RALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLIF 604 Query: 494 ---NAKPISAAVKEFFGSSQLSQFMDQNNPLS-------EITHKRRISALGP-GGLTRER 542 + KE + + ++ P++ + RR+ +G Sbjct: 605 MLGAEDIQTVGGKEIYAPGSYTISINGT-PMALTRRPKYFLNAFRRLRRMGRISEFVSIY 663 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 R VH + T +G P V DG + Sbjct: 664 INHHQRAVH---------VATDDGRIC-------------------RPLIIVEDGKSRVK 695 Query: 603 IHYLSAIEEGNY----VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 H+L + +G +AQ + + L+ D +M++ Sbjct: 696 KHHLRKLRDGTMQFDDFLAQGLVEYVDVNEENDSLIAI-----YEKDITDTTTHMEIEPF 750 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 ++ A LIP+ H+ + R M +QA+ + +++ L Sbjct: 751 TILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFL------------------- 791 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 +D+ ++ + M LTKY + Sbjct: 792 -------RIDSILYLMVYPQKPMVKSR----TIELTKYDQLP------------------ 822 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 GQN VA M ++GY+ ED++++++ V ++ Sbjct: 823 -----------------AGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVT 865 Query: 839 VSRDTKLGPEEITADIPNVGEAALSK---LDESGIVYIGAEVTGGDILVGKVTP-KGETQ 894 + G ++I + +A + K L+ G+ +G +V G++ + K TP + + Sbjct: 866 NMKSYSNGTKDILSPPTYENDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSS 925 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 P R I + + + V + + + + L + + + Sbjct: 926 GMPGSDAGRPISYNP------TPMTYKLPDPAYIDKVMISATENENQIIKVLTRQTRRPE 979 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 K S Q G+ + + P + + Sbjct: 980 VGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVGK 1029 >UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E7H8_TRIVA Length = 1177 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 210/1236 (16%), Positives = 393/1236 (31%), Gaps = 232/1236 (18%) Query: 164 THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDL 223 + Y+ + + L V K+P I + + Sbjct: 113 ISRLRSLSYSLILRSDIRVVVMDSNKNMKQLDVDGVEIAKVPVMIRSEYCHLSNH----- 167 Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVK 283 RD++ + + E F + + KV + + + + I +K VK Sbjct: 168 ---------RDDRAINDNLNECDYDPGGYFIVNGSEKVIIGQEHMVINKPICYAQKSMVK 218 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS--GHKRIETLFTNDL 341 ++ E + V L+ + + AKLS++ Sbjct: 219 Y-DLATEIRSQPKVFGRLSQPFNLFLLAPTAKQPERPIHAKLSKTEKTIPLFILFRALKF 277 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFF-------SEDR 394 I + + DP + E ++RP + + F +E++ Sbjct: 278 KGDKEILDLICYDPEDS------EFIDVLRPSIEESSSFLDDRACLDFVGKRCSIAAEEK 331 Query: 395 YDLSAVGRMKFNRSLLRE--EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR 452 + N LL E E I + LI++ G+ + DD DH N+R Sbjct: 332 SQRLRKAQRLLNEYLLPHLGEKESDTTSKAFFIGYMAHNLINVVLGRRDQDDRDHYSNKR 391 Query: 453 IRSVGEMAENQFRVGLVRVER----AVKERLSLGDLD-------TLMPQDMINAKPISAA 501 + G + F + ++ + +++RL G++D L Q ++N K I++ Sbjct: 392 LDLAGPLIGQLFALLFEKMIKSLTQHLEKRLKDGNIDQMAKSAADLTRQGVLNFKSITSG 451 Query: 502 VKEFFGSSQLS------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 ++ G+ S Q +++ LS +++ RR + + R+ R Sbjct: 452 LEYSIGTGNWSVQRQAGSKAGVSQMLNRLTFLSTLSNLRRTNT----PIGRDGKLTGPRH 507 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET--PYRKVTDGVVTDEIHYLS 607 +H TH+G +CP+ETPEG + GLI +L++ + LE ++ + T I ++ Sbjct: 508 LHNTHWGYICPVETPEGQSCGLIKNLALMSIVTVNRELEAGDAITRILEDTGTIPIQQIT 567 Query: 608 AIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 + + N +E L++ R + Sbjct: 568 PDQIKDSTKIFLNGAWYGIHTDAYDLMETLLSERRSLKIPSDVS---------------- 611 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 F+ H + + R P L + T + + ++ V + G+ Sbjct: 612 ------FVHHIRDQEIFIWTDGGRITRPVLIV-NDMHLTLKKSVLYDENTNWKVLRYKGM 664 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 V+Y+D K+ + +L + S V+ Sbjct: 665 VEYLDIDEEETKL---------IALSPADLEENRNSPTG--------------VKTYTHC 701 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 PS G + +P+ +N S + + + ++ + Sbjct: 702 EIHPSLIFG-------VCGTIIPFPDHNQ--SPRNTYQCAMGKQAIGLYTTNYMIRMDSS 752 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 P V + L+ + + G VT V T E+ L+ Sbjct: 753 SHVLW--YPQKPLVATRNMRYLNFNKLPA-GINVT--------VAICCYTGYNQEDSLML 801 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 + S T +G + + + K + Sbjct: 802 NASAIDRGLFR--SYFFRTYKE---------TAEGDGTEGASEVFTFPDPQTVKGIKLHD 850 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 ++A + AV+ A V K+ + + +Q + + E Sbjct: 851 SSKIDADGLAIPGAVVSAQDVIIGKISP-------DSPTELDHRQYKDTSCVVRPMETG- 902 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 + L++ +V RR + GDK RHG KGV E Sbjct: 903 ----------VVDLVLRTITKKNLQLARVRTRQMRRPEIGDKFCSRHGQKGVCGMTYRQE 952 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI---GDKINAMLKQQQEVAK 1140 DMP+ +G DI++NP +PSRM IG ++E LG D+ +A V Sbjct: 953 DMPFTRDGMVPDIIMNPHALPSRMTIGHLIECLLGKCTAIDPQNADEGDATPFCGVTVDA 1012 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 + + +Q A + Sbjct: 1013 IAKRLQDAGFEKYGNETLYNG--------------------------------------- 1033 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 SG+ + + + G Y +L H+V DK HAR+ G SL+ +QP+ Sbjct: 1034 -----RSGK----------RLKAKIYFGPTYYQRLKHMVGDKAHARALGRKSLILRQPVD 1078 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM-----------Y 1305 G+A+ GG RFGEME L A+G + +++ L SD V + Sbjct: 1079 GRARNGGLRFGEMERDCLIAHGVSAMMRDRLLENSDRYFVPVCKTCGLIAIEKTDGTMEC 1138 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 D + MP +F ++++E+ S+ I L Sbjct: 1139 PACQDEGRLAKVEMPYAFKLVIQELMSMCIAPRLNL 1174 Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 104/754 (13%), Positives = 233/754 (30%), Gaps = 115/754 (15%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKF----------------IEQDPEGQYGLEAAFRSVFP 58 + + + L+ QL S+ F ++ D ++ F S Sbjct: 22 WMVISKFFENRGLVKQQLKSYNSFINNCVDSVLDDKGHITLQSDQLLANKIKMDFNSNDD 81 Query: 59 IQSYSGNSELQYVSYRLGEPV------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 + + + + + P ++R ++YS LR +R+V+ + Sbjct: 82 DEDQGKTIHISFGTSTVLRPTTPEGKQLTPMISRLRSLSYSLILRSDIRVVVMD---SNK 138 Query: 113 TVKDIKEQEVYMGEIPLM--------------------------TDNGTFVINGTERVIV 146 +K + V + ++P+M G F++NG+E+VI+ Sbjct: 139 NMKQLDVDGVEIAKVPVMIRSEYCHLSNHRDDRAINDNLNECDYDPGGYFIVNGSEKVII 198 Query: 147 SQLHR---SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD------PKDNLFVR 197 Q H P + K + ++ ++ + P+ + + Sbjct: 199 GQEHMVINKPICYAQKSMVKYDLATEIRSQPKVFGRLSQPFNLFLLAPTAKQPERPIHAK 258 Query: 198 IDRRRK-LPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVP-ERLRGETASFD 254 + + K +P I+ RAL + ++ILDL + L+ + + A D Sbjct: 259 LSKTEKTIPLFILFRALKFKGDKEILDLICYDPEDSEFIDVLRPSIEESSSFLDDRACLD 318 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + + R ++L + + E + Sbjct: 319 FVGKRCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDTTSKAFFIGYMAHNLINVVLGR 378 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE--IYRMMRP 372 + +KR++ + E + T L + I +M + Sbjct: 379 RDQDDRD-----HYSNKRLDLAGPLIGQLFALLFEKMIKSLTQHLEKRLKDGNIDQMAKS 433 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 TR+ F+++ + + ++ + L+ + +++ Sbjct: 434 AADLTRQGVL-NFKSITSGLEYSIGTGNWSVQRQAGSKAGVSQMLNRLTFLSTLSNLRRT 492 Query: 433 IDIRNGKGEVDDIDHLGNRR------IRSV----GEMAENQFRVGLVRVERAVKERLSLG 482 G++ HL N + + + +N + +V V R ++ ++ Sbjct: 493 NTPIGRDGKLTGPRHLHNTHWGYICPVETPEGQSCGLIKNLALMSIVTVNRELEAGDAIT 552 Query: 483 DLDTLM---PQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 + P I I + K F + D + + + +RR S P ++ Sbjct: 553 RILEDTGTIPIQQITPDQIKDSTKIFLNGAWYGIHTDAYDLMETLLSERR-SLKIPSDVS 611 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIG---LINSLSVYAQTNEYGFLETPYRKVTD 596 +RD + +G I LI + + E KV Sbjct: 612 F---VHHIRDQEIFIW--------TDGGRITRPVLIVNDMHLTLKKSVLYDENTNWKVLR 660 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 + YL EE +IA + ++L+E + + T + ++ Sbjct: 661 YKGM--VEYLDIDEEETKLIALSPADLEENRNSPTGVKTY--------------THCEIH 704 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + V ++IPF +H+ + R M +QA+ Sbjct: 705 PSLIFGVCGTIIPFPDHNQSPRNTYQCAMGKQAI 738 >UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putative n=1 Tax=Babesia bovis RepID=A7AM79_BABBO Length = 1171 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 201/1394 (14%), Positives = 430/1394 (30%), Gaps = 325/1394 (23%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 I+ + P + + + ++S+ F R + I + Sbjct: 36 IKDKWKILPCYMGMRGIARQHINSYNNF-------------VLREIKEIVN--------- 73 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 AP ++ I+ ++ +GE P M Sbjct: 74 -----------------------AP-------SNKMLKSDACKKFYIEFIDINVGE-PTM 102 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 ++N N ++ QL R + + + ++D E+ Sbjct: 103 SEN-----NNKPILLTPQLCRMRDITYSAPM---------------------YVDVEYYN 136 Query: 191 KDNLFVRIDRRRKLPATIILRALNYT--------------TEQILDLFFEKVIFEIRDNK 236 + + + +LP + + + ++ + ++ + I Sbjct: 137 GEGVASKRVEIGRLPVMLRSCVCALSGGMRANGNVDNFELSSRLGECPYDPGGYFIIKGV 196 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 ++ L+ E+L + + + A + + V Sbjct: 197 EKVILMQEQLSKCRVIVETDVKKNIC--------ATVTSATAESKSRTAVVYKNQKLYVR 248 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 D ++ A + ++ + +G + + E L + Sbjct: 249 HNSFTDDVPLCIILKAMGVTTDEEIAQLIGTAGARE----YLPTGGDYILSIEDLYNEGI 304 Query: 357 NDRLSALVEIYRMMRPGEPPT--REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 N R+ AL+ + R +RP +++ + + R+ + +R Sbjct: 305 NTRMDALLYVGRKVRPRPLAKGFFTSSKERLPKTNQNLIEDTHDILTRVLLSHIPMRNCR 364 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 + SG + + + ++++ + +GK +DD DH GN+R+ G++ F Sbjct: 365 DFSGKIKS--LCLMARRVLSVASGKEPMDDKDHYGNKRLELAGQLISILFEDLFKAFLGQ 422 Query: 475 VKERL--------------------SLGDLDTLMPQDMINAKPISAAVKEFFG------- 507 +K+++ D +P D+I + + Sbjct: 423 LKKQIDATLTRHYEIVSNCHGGEQAKYPDCLVSLPTDIITRGMQATISTGNWNIKRFRIE 482 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 S +SQ + + + +S + + ++ + R + R + P+ G +CP +TPEG Sbjct: 483 RSGVSQILSRLSYISCLGMMTKTNS----QFEKGRKVSKPRALQPSQLGLICPCDTPEGE 538 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS---AIEEGNYVIAQANSNLD 624 + GL+ +LS+ G +E + + + LS ++ V N + Sbjct: 539 SCGLVKNLSLMNHVTTDGDIERLVELLYW-LGVESADALSARDCFDDDRNVTVFLNGIII 597 Query: 625 EEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 ++D+V R +G+ S F +Y + S G L L + + L Sbjct: 598 GVHQNGKQLIKDVVALRRRGKISAFVSVFENYQQ-REVHISSDGGRLCRPLIVVENGKPL 656 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 + + Q V L +G+ + V+ + I + E + Sbjct: 657 LTPKVLSQLVEGQIPLSKLFASGVLEWIDVNEENNTL----------------IVMRESD 700 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 + P ++I ++ + Sbjct: 701 ITPKTTHLEISPMSM------------------------------------------LGV 718 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 +P+ +N + ++ + ++R + + P V Sbjct: 719 VAGLIPFPNHNQSPRNTYQCAMGKQSIGSI----GYNQLNRCDTILHLMVYPQRPLVTTK 774 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 A+ ++ + + ++ A+ + +++D Sbjct: 775 AIQLVNFDKLPA-------------------------GQNVIVAVMSYQGYEIED----- 804 Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 VI+ R +L +++++ +I V Sbjct: 805 -----AVVINKASSER--GFSRCYSLRRVTVEIEKLNHAAERP---GGLNNRPQITNVTP 854 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 L D + +G ++ L++L + + K + + Sbjct: 855 VDD--------LTGDSVIGVGQKVKKDDTLLKKLTQTSTGQIKVTDIKYQFNQPAYVDRV 906 Query: 1041 DLAPGVLKIV--KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 + + V K+ L R + GDK + RHG KGV+ I E++P+ E+G D++ Sbjct: 907 MCITTIAESVMYKIMLRQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSEHGWVPDLI- 965 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 MN H + +G + Sbjct: 966 --------MN------PHGFPSRMTVGKML------------------------------ 981 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 E++ + G+ F+ I+ L +G+ LY G TG Sbjct: 982 ---------ELVAAKAAVLNGIFEDGTPFEADSLPAIERSLIKKGFHPAGKEILYSGITG 1032 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E E + G MY KL H+V DK+HAR+ G +T+QP G+++ GG R GEME L Sbjct: 1033 EPLETLIFTGPMYYQKLKHMVSDKIHARAVGPRQSLTRQPTEGRSKDGGLRLGEMERDCL 1092 Query: 1279 EAYGAAYTLQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLK 1328 AYGA+ L E L + SD DV + +P + +L + Sbjct: 1093 IAYGASGLLVERLMLSSDVFQMDVCHQCGFIGYDGWCAYCKQRGQTATVAIPYACKLLFQ 1152 Query: 1329 EIRSLGINIELEDE 1342 E++++ I + + Sbjct: 1153 ELQAMNIRPNVILK 1166 >UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSL6_9ALVE Length = 1255 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 196/1232 (15%), Positives = 366/1232 (29%), Gaps = 227/1232 (18%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFDIEANGK 260 +P + A + + + R + + L ++F + Sbjct: 155 VPIMVRSEACHLHGMPPSKMVQCGEDPDERGGYFIVNGNEKVIRLLIMPKSNFPVALYRP 214 Query: 261 VYVEKGRRITAR-HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI--------C 311 + +G +A + + D+ V + Y + LI Sbjct: 215 SFSNRGPLYSAYAVQMRSMRPDLTTQTVTMHYRKDGTCWVRFTYLKNEYLIPLMLLLKCL 274 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 A + S L +L G + + + + R AL + Sbjct: 275 APDELNSERSLFELLCDGLMADTFVAERVTCMLEQMRTHPELKHVHSREDALYYLGSKFE 334 Query: 372 PGEPPTREAAESLFENLFFSEDR-----YDLSAVGRMKFNRSLLREEIE--GSGILSKDD 424 R A SL +D +V R + +L + G D Sbjct: 335 VVFREKRGAGVSLDGIALEVDDAAMSPVEKSVSVARRLLDSLMLVHCPKGAEGGKAKVDC 394 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR---------VERAV 475 ++ + +KL+ + G D+ D + + + G++ + L +++ Sbjct: 395 LVLIFRKLMALVRGDIAPDNADAMDVQELLLPGQLFGALLKEVLQSSLLRLEGALAKKSR 454 Query: 476 KERLSLGDLDTLMPQDMINAKP-----ISAAVKEFFGSSQLS--------------QFMD 516 + ++ G T++ ++I ++ ++ F + ++ D Sbjct: 455 QAQVGKGRAPTVLSAELIRNTFMGVCDVTKRMESFLATGNITSRSGLDLQQTTGFTVVAD 514 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + N ++H R A+ G +E VR + P +G +CP+ TP+G GL+N L+ Sbjct: 515 KLNAYRYLSHFR---AVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHLA 571 Query: 577 VYAQTNEYG-FLETPYRKVTDGVVTDEIHYLSAIEEGNY-VIAQANSNLDEEGHFVEDLV 634 Q E + + + + + + + + A N+ + +G + + Sbjct: 572 APCQPVVRIASPEGVIPGLEEELASLGVQLVRSSKTSTANYGAGENAYVTLDGRVLGKVA 631 Query: 635 TCR--------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 R + + +++ Q + L F R + Sbjct: 632 RSRLEAVAEELRRLKIDKDCPGVPADLEIVACQTPASFEGLWLFTGPCRMVRPV------ 685 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 ++ LV G V + T I +K E+ P Sbjct: 686 ---RDLATGNEELV--GPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISM 740 Query: 747 GIDIYNLTKYTRSNQ---NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 I LT ++ NQ N QM L + + +V Sbjct: 741 LSVIAGLTPFSNHNQSPRNMYQCQM--------------LKQTMAIPYLNHPYRTDNKVY 786 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS 863 + + + + ++SE G I A I + G Sbjct: 787 KITYPQFPMVRTTVLSEA-----------------NFDVKPAGTNAIVAVIAHSGFDMED 829 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 L I+ G+ Sbjct: 830 AL----IISKGS-------------------------------------------YDRGF 842 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 G+V +V K + + + + ++ L+ I + G Sbjct: 843 KHGSVYKTKVINCP--PKGTVGSRLAQFRADNHSVKGEKVVKDLDYDGIPYIGQQVHEGD 900 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 P R L G E K + ++ + E + + Sbjct: 901 ---------PICRVLNKGTG-EAKLEKYKEGEVAWVEQVNMIGGGGWWGGGAGARNPGGI 950 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 + + + L + R GDK + RHG KGV++ + P DMP+ +G DI+ NP G+ Sbjct: 951 KDGSERMSIKLRLPRNPVVGDKFSSRHGQKGVMAILWPQADMPFSTSGISPDIMFNPHGM 1010 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG ++E G AA G + V+ ++ Sbjct: 1011 PSRMTIGMLIEFMAGKAAALTGMPV------------------------------VNANS 1040 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 F L + D E LK G LY G GE + Sbjct: 1041 FRQYRGKGLLDTEHNNEKDPYAPGDTTAHEYFGETLKKFGYEYLGAEELYSGMHGEPLKT 1100 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME +L ++G Sbjct: 1101 HIYMGVVYYQRLRHMVLDKFQVRATGPIDPLTRQPVKGRKKHGGVRFGEMERDSLISHGT 1160 Query: 1284 AYTLQEMLTVKSDDVNGRTK-MYKNIVDGNHQME-------------------------- 1316 + L + L SD +I+ H E Sbjct: 1161 SALLADRLLKCSDACEDWVCPECGSILSYAHSPETVKRYSGREAAAQAPICRACSTERGI 1220 Query: 1317 ------PGMPESFNVLLKEIRSLGINIELEDE 1342 +P F + E S+ I + L + Sbjct: 1221 EVRCAAVTLPYVFRYMSAEFASMNIRLRLRVK 1252 Score = 106 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 48/315 (15%), Positives = 94/315 (29%), Gaps = 60/315 (19%) Query: 28 LSIQLDSFQKFI-----EQDPEGQYGLEAAFRSVFPIQSYSGN-SELQYVSYRLGEP--- 78 + +DSF F+ + GL S + + G L +P Sbjct: 47 VKPHVDSFNLFVITGLTPEATNEILGLLPDDISPAEMTWHDGTTVRCWLSDLSLHQPIRG 106 Query: 79 ------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 C+ +TYS L + + + E P + V +G +P+M Sbjct: 107 EDVLDPRLLPTHCRQAHITYSGELSATVNVSLGTGEPPVQMAR------VPLGLVPIMVR 160 Query: 133 NG------------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 + F++NG E+VI + F + + S+ Sbjct: 161 SEACHLHGMPPSKMVQCGEDPDERGGYFIVNGNEKVIRLLIMPKSN-FPVALYRPSFSNR 219 Query: 169 KVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRK---LPATIILRALNYTTE 218 LY+A + R + + +VR + +P ++L+ L Sbjct: 220 GPLYSAYAVQMRSMRPDLTTQTVTMHYRKDGTCWVRFTYLKNEYLIPLMLLLKCLAPDEL 279 Query: 219 QILDLFFEKVIFEIRDNKLQMEL---VPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 FE + + + E + E++R + + G + R Sbjct: 280 NSERSLFELLCDGLMADTFVAERVTCMLEQMRTHPELKHVHSREDALYYLGSKF-EVVFR 338 Query: 276 QLEKDDVKLIEVPVE 290 + V L + +E Sbjct: 339 EKRGAGVSLDGIALE 353 >UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QD43_LEIMA Length = 1132 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 204/1297 (15%), Positives = 396/1297 (30%), Gaps = 246/1297 (18%) Query: 95 PLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL---MTDNGTFVINGTE-RVIVSQLH 150 P + +R ++ A + +++ Q + + E + T + FVI R+ Q Sbjct: 24 PALMGMRGILNHHIASFDHLIEVELQRILLNESNVEIKSTVDPDFVIRYQNIRICRPQEI 83 Query: 151 RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF---DPKDNLFVRIDRR-RKLPA 206 G + + Y +I +D ++ D + V D + +P Sbjct: 84 VGKGHIPKLVTPQECRIRDMTYRGDMI------VDVQYTSRDRSRAMLVEKDVKIGTIPI 137 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 + + N + +L + E F I+ KV + + Sbjct: 138 MLKSKCCNLYRKTREELV----------------NMRECPLDPGGYFIIKGVEKVCLVQE 181 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 ++ R I + ++ V + + ++ + + ++ L Sbjct: 182 QQSKNRVIIEADEHGNISAHV-QSKTHYSISKCAVTFKKGSIVLTHRSFTEDIPIIVVLK 240 Query: 327 QSGHKRIETLFTNDLDHGPY------ISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 G + + + + E R+ + AL I + E Sbjct: 241 ALGLENDQHITQCIGTLPEFQKILFPCFEEARLLNVVTQNDALQYIGEKRKETVWEAEET 300 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 + + L+ V + +++ + + + +++ +I+ Sbjct: 301 QQRQVNRSKADKAAEFLANVLLCHIREAQVQK--DWNFRHKAFYVCFMVRGMIEASFDTS 358 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-----SLGDLDTLMPQDMINA 495 +D+ D GN+R + G + F L + R VK + + ++ + Sbjct: 359 LLDERDFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLSRKDSTRPFNVKQLMES 418 Query: 496 KP--ISAAVKEFFGSSQL--SQF-MDQNNPLSEITHKRRISALGP-----GGLTRERAGF 545 K I ++ S + +F M++ ++ I++LG + R Sbjct: 419 KMEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASSFEKTRKVS 478 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 R + P+ +G VCP +TPEG + GL+ + + +Q R + +EI Sbjct: 479 GPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVTLDLNDN-YVRAAAHALGVEEIDT 537 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDL----VTCRSKGESSLFSRDQVDYMDVSTQQVV 661 ++ + +Y N L + L T R G T Q+ Sbjct: 538 VTPTDFLHYCTVFLNGTLIGIHRYPNRLCAGIRTLRRSGRLHPHVSISTQPRQ-RTVQIG 596 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 S G ++ L + + + + L + Sbjct: 597 SDGGRIVRLLIIVRDGKPAVTSAHLDRLRDRLCTHNDFLA-------------------E 637 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G+ +YVD + N+ + A I Y T + P LG Sbjct: 638 GLTEYVDVNES----NDCLIAVYPADIGPYT----------THLEVEPLSLLG------- 676 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 + +P+ +N + ++ T Sbjct: 677 ------------------VVAGIIPYPHHNQSARNTFQSAMGKQALGT------------ 706 Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 V + + +L+ P+ T L Sbjct: 707 -----------------------------VALNQYIRADTVLLLGAYPQRPLCRTKAMSL 737 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS 961 ++ G++ V V ++ +E + + + L Sbjct: 738 -------------THYEKLGAGINAMV-CVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLR 783 Query: 962 EELQILEAGLFSRIRAVLVAGGVE-AEKLDKLPRDRWLELGLTDEEKQNQLEQLA----- 1015 + LE +L K L D G ++ + + Sbjct: 784 KHEVDLEKYAGGEFDVILPPEKNSGTGKFKALNPDGVAGKGALVQQYDVLVNKFTPVAGG 843 Query: 1016 --EQYDELKHEFEKKLEAKRRKITQGD-DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 + + + GD D + V + +KV R +PGDK + RHG Sbjct: 844 DPRPAPLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKIKVVTREVRPPEPGDKFSSRHGQ 903 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KGV+ I DMP++E G D+++NP H + +G + Sbjct: 904 KGVVGLIVNGVDMPFNERGMCPDMIMNP---------------HGFPSRMTVGKLL---- 944 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 E++ +G F G Sbjct: 945 -----------------------------------ELVCSKAAALRGSMGDGTAFGGESA 969 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 I + L G+ Y G TGE + V G +Y +L H+V DKMHARSTG S Sbjct: 970 DSISQQLLSFGYNYHGKDVFYSGITGELMQGYVFFGPIYYQRLKHMVTDKMHARSTGPRS 1029 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK----- 1303 ++T+QP G+++ GG R GEME + YGA+ L E L + SD D+ Sbjct: 1030 MLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLISSDMFTADICHVCGNLGYN 1089 Query: 1304 -MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + MP +F +L++E++ +G+++ L Sbjct: 1090 NRCTYCKTKGTTSKVNMPYAFKLLIQELQGMGVSLRL 1126 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 73/481 (15%), Positives = 140/481 (29%), Gaps = 54/481 (11%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY-SGNSELQ 69 RK P ++ + +L+ + SF IE + + L S I+S + ++ Sbjct: 16 QRKKLEMLPALMGMRGILNHHIASFDHLIEVELQRIL-LNE---SNVEIKSTVDPDFVIR 71 Query: 70 YVSYRLGEPV-----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 Y + R+ P QEC+IR +TY + V ++ +R + Sbjct: 72 YQNIRICRPQEIVGKGHIPKLVTPQECRIRDMTYRGDMIVDVQYTSRDRSRA-----MLV 126 Query: 119 EQEVYMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRSPG 154 E++V +G IP+M + F+I G E+V + Q +S Sbjct: 127 EKDVKIGTIPIMLKSKCCNLYRKTREELVNMRECPLDPGGYFIIKGVEKVCLVQEQQSKN 186 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 + S V Y S F + +P ++L+AL Sbjct: 187 RVIIEADEHGNISAHVQSKTH---YSISKCAVTFKKGSIVLTHRSFTEDIPIIVVLKALG 243 Query: 215 YTTEQ-ILDLFFEKVIFEIRDNKLQMELVPERLRGET---ASFDIEANGKVYVEKGRRIT 270 +Q I F+ E + + + V+ + + Sbjct: 244 LENDQHITQCIGTLPEFQKILFPCFEEARLLNVVTQNDALQYIGEKRKETVWEAEETQQR 303 Query: 271 ARHIRQLEKDDVKLIEVPVEYIAGKVVAKD-YIDESTGELICAANMELSLDLLAKLSQSG 329 + + +K L V + +I V KD + + L Sbjct: 304 QVNRSKADKAAEFLANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDTSLLDER 363 Query: 330 HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF 389 F + E L +A+ + P + + Sbjct: 364 DFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLSRKDSTRPFNVKQLMESKMEVI 423 Query: 390 FSEDRYDLSAVG-RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 + R +S+ +K + + LS + +M +L +V L Sbjct: 424 QNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASSFEKTRKVSGPRSL 483 Query: 449 G 449 Sbjct: 484 Q 484 >UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSV4_ENTBH Length = 1138 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 215/1366 (15%), Positives = 400/1366 (29%), Gaps = 286/1366 (20%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSY 73 ++ D L+ QLDSF +F++ ++ I Sbjct: 21 NWAIITSFFDQKGLVRQQLDSFNQFVK------IKMQEIIDENSII-------------- 60 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV--YMGEIPLMT 131 T + E+E+ Y G+I ++ Sbjct: 61 ---------------------------------SVKSIPTAGNSIEREIKLYFGQISILG 87 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 I+GT I+ R + + K Y I E D Sbjct: 88 PPINTEIDGTSSKILPNEARLRDLTY---WVNMFIDVKKAYYENGI---------EVDVS 135 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETA 251 + V LP + D + + + + + Sbjct: 136 KTIRVPFGS---LPVMVKSELCALKELNDKDNIRLGECPYDQGGYFIITGGEKVIVAQER 192 Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 I N +K + + ++ ++P + V I S + Sbjct: 193 ---IATNMVHIFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKVVKNLRVIRASINLV-- 247 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDH--GPYISETLRVDP-TNDRLSALVEIYR 368 L + L + K I + D D Y+ +L D+LSAL I + Sbjct: 248 -KQDIPVLIIFRALGFNSDKEILSYIQYDNDKELNEYLLNSLEEASCIQDQLSALDFIGK 306 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 P + + L +G+ +F + + Sbjct: 307 R----SAPIGSPKSKRIDFAKQILIKEFLPHIGQQEF-----------CETKKAYFLGYM 351 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDT 486 + K++ + GK +VDD DH G +R+ G + N F+V ++ + L + Sbjct: 352 INKILLVITGKRDVDDRDHYGKKRMDLSGPLLANLFKVLFKKLLTETTKYLQKCVENNRE 411 Query: 487 LMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISAL 533 + + I+ K + +Q + + N LS ++H RR++ Sbjct: 412 FNLTIGLKSSIITQGFKYALATGNWGHQEKAMSTRAGVAQVLSRYNFLSTLSHLRRVNT- 470 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 + +E R +H TH+G +CPIETPEG GL+ +LS+ A + G + Sbjct: 471 ---PIEKEGKLAAPRQLHNTHWGMICPIETPEGHACGLVKNLSLMAYISV-GKSSNQIIE 526 Query: 594 VTDGVVTDEIHYLSAIE-EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 + + + + + + I V + V+ L R GE + Sbjct: 527 ILEELGVERLEEIEYIYGTKILVNGAWIGVTSDPVRIVQILKKFRRHGEIDSEISI-IFD 585 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 + + ++ S L + N L+ L+ G + Sbjct: 586 IKENEIKINSDAGRPCRPLFIVENNELLVNKQDIEDLKNIKIKWDDLIKNGK-IELLDIE 644 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 G+ D ++ Sbjct: 645 EEEVSLIAMGLNDLKDTNK----------------------------------------- 663 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 + P+ LG + + +P+ +N S + + + I+ Sbjct: 664 ------QYTHCEIHPAIILG-------ITASVIPFPTHN--PSPRNTYQSAMGKQAMGIY 708 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 R L P V ++ + Sbjct: 709 STNF--FKRMDTLSNILCYPQKPLVSTKSMEYI-------------------------KF 741 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF-TRDGVEKDKRAL---EI 948 +L + + AI + +DS + + + +F T EK K +I Sbjct: 742 KELPSGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFRSFLFRTYSDQEKMKYTGVNEKI 801 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 +++ + IL + V K P + + Sbjct: 802 CKIERSVIFRPKKNNYDILGNDGIVCPGTQVYGDDVIIGK--MTPILDVEKSTPGNPFYL 859 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + + E I + K KV + R Q GDK A Sbjct: 860 FKDTSTLIRKTEQG------------NIDKVIVTTKDGYKFTKVKVRSMRIPQMGDKFAS 907 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RH KGV+ EDMP+ +G D+++NP H + IG Sbjct: 908 RHAQKGVVGITLKQEDMPFTSDGLIPDVIINP---------------HAIPSRMTIGHLF 952 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF- 1187 A+L + G+ F Sbjct: 953 EALLGKLTT---------------------------------------LNGIEGDATPFA 973 Query: 1188 -DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 EI + L G ++ G TG + + + +G Y +L H+VDDK+HAR Sbjct: 974 NKPQTIDEISKELAKYGYQKRGFEIMHSGATGYKLKSQIFIGPTYYQRLKHMVDDKLHAR 1033 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 + G ++T+QP+ G+++ GG RFGEME + ++GA+ L+E L SD + Sbjct: 1034 ARGPLQIMTRQPVEGRSREGGLRFGEMERDCIISHGASAFLKERLMDVSDVYT--CGVCD 1091 Query: 1307 NI----------VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 N + + +P +F +L++E++ + I + ++ + Sbjct: 1092 NCGLICNNNCTGCNNSTISNINIPYAFKLLIQELQGMNIFMRIQTQ 1137 >UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeota RepID=A9A459_NITMS Length = 1115 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 225/1376 (16%), Positives = 421/1376 (30%), Gaps = 316/1376 (22%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 K + +L + L+SF +F+E+ GL++ I + G +++ Sbjct: 7 KRWPVIQDILKREGIARQHLNSFDEFLER------GLQS-------IINEVGQIDIENAE 53 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 Y P +++L +K Q+ P M Sbjct: 54 Y---------------------PYKIQL--------------GKVKLQQ------PRM-- 70 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 ++G+ V Y+A ++ D + Sbjct: 71 ---MELDGS---------------ITHITPAEARLRNVSYSAPVMMEASVVEDGKILESR 112 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 + + +P A L Sbjct: 113 FVHI-----GDVPVMAKSNACILHNFSTQKLVEHGEDPND----------------PGGY 151 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV--EYIAGKVVAKDYIDESTGELI 310 F I + +V V + I E ++ I G + + ++ G ++ Sbjct: 152 FIINGSERVIVGLEDLSYNKIIVDRETVGGNIVHKAKVYSSIVGYRAKLELVMKNDGLIV 211 Query: 311 CAA-NMELSLDLLAKLSQSGHKRIETL---FTNDLDHGPYISETLRVDPTN-DRLSALVE 365 + + ++ + G + + + + + + A+V Sbjct: 212 ARIPGSPVDIPVVTLMRALGLESDREIAAAVSLVDELQDELEASFEKAGDVPTAKDAIVY 271 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 I + + PG E + D L +G+ + + Sbjct: 272 ISKRIAPGMLE-----EFQIKRAETLLDWGLLPHLGKH-----------PENRKEKAQFL 315 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 + KL++++ DD DH GN+ I+ G+M + FR + R +K +L Sbjct: 316 GEAACKLLELKLDWIRPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQK 375 Query: 486 T--LMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPG 536 I I+ + + +Q +D+ N LS I+H RRI + Sbjct: 376 RGINAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQS---- 431 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 L+R + FE RD+H TH+GR+CP ETPEG N GL+ +L++ + E K+ D Sbjct: 432 PLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYD 491 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 + T + + + L + E L R + Sbjct: 492 -LGTVHFFDAKEDLKKDGTRIFVDGRLIGYYKDGEQLAESLRDLRRNSKI---------- 540 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL--RADKPLVGTGMERAVAV 710 VS S I R + N R P + + +KPL+ + ++ Sbjct: 541 ---HPHVGVSFHKSEI----EGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISK 593 Query: 711 DSGVTAVAKRGGVVQYVDASRI--VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 R GV++ +DA+ +++ ++++ Sbjct: 594 KLISWTDLLRMGVLEMIDANEEENCYVTLDEKDTKKHTHLEVFP---------------- 637 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 + +P+ +N + ++ Sbjct: 638 --------------------------PAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 + + + R + +P V A+ L Sbjct: 672 FSTPMMNTSTYVR----QHFMLYPQVPIVNTKAMKLL----------------------- 704 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL-- 946 G + + A+ +++D+ + V + F E + Sbjct: 705 --GLEDRPAGQNCVVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGM 762 Query: 947 ----EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 EI + ++LE A + G + K PR Sbjct: 763 RDAFEIPNAEDNIRGYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSP-PRFMEEYREF 821 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 + + + E + + K+ K+ R + Sbjct: 822 ESSGPYRRDTSIGVRPSETGVVDTVVM-----------TQSNEGGKMYKIRARDMRIPEI 870 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK A RHG KGV+ + ED+PY +G D+++NP H + Sbjct: 871 GDKFASRHGQKGVLGILAKAEDLPYTASGMSPDVLINP---------------HAFPSRM 915 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 +G + ++ + +G Sbjct: 916 TVGMMMESICGKSA---------------------------------------ALRGKRF 936 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 F G K E++E++ SG+ +YDGRTG+ F V +G +Y KL+H+V DK Sbjct: 937 DGSAFVGEKMDEVREVMDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADK 996 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----V 1298 +HAR+ G ++T+QP G+A+ GG RFGEME L AYGA+ L++ L +SD V Sbjct: 997 IHARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFV 1056 Query: 1299 NGRTK------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R + + D + +F +LL+E++SL + L + Sbjct: 1057 CERCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRLLIK 1112 >UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax=Marseillevirus RepID=D2XA39_9VIRU Length = 1277 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 213/1263 (16%), Positives = 429/1263 (33%), Gaps = 135/1263 (10%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 RV + F SD + + I E+ + + + R Sbjct: 87 RVTHHEFDDRIKDIFPSDARRRGIPYSAPFYCDIFVTTADGETAEYKQQTIAEIPVMVRS 146 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 L Q + +K + I D ++ + G ++ + K Sbjct: 147 CLCNLTRYNLQGDECRQYGEDPMDKGGYFIIDREIVVISSERGAFGRVYTYADKQANKKM 206 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 + R I + V +E + A+ ++ + M S + Sbjct: 207 PKYEVHSEIR-ISATSNTRTTTVYVGLENGVAVLYAQHLSEKGIPLCVVLEAMNFSYLDI 265 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG--EPPTREA 380 K ++ K L+H + + R + + + ALV + G E P +A Sbjct: 266 LKFTKGLTKEQRGFLIPSLEHARAMFPSSRKNRVSSMVKALVAMGYKKPKGVEELPPSDA 325 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 L + + ++ + + ++ G Sbjct: 326 EVKLAVWAATLSKELCEKLFPCYREADK------------KVWFMCYMLARALKVKTGDR 373 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA 500 + +D DH N+R+ V + N F + + +K+ G T P I +K I+ Sbjct: 374 QPEDRDHYTNKRVDCVDSLLNNLFYSMWNQTTKFIKDS-CKGKERTADPLKPIRSKSITK 432 Query: 501 AVKEFFGSSQLS------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 ++ + S Q ++ N ++ ++ R++ A + E + R Sbjct: 433 KIRTAMSTGNWSSFNTKSKKQGTSQNYERYNIVASCSNLRKVHA----AIGTEGNMTKPR 488 Query: 549 DVHPTHYGRVCPIETPEGPN-IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 VH + YG +CP +TPE + GL L++ A + +E + + + Y S Sbjct: 489 RVHESSYGFICPPDTPESKDKTGLSKVLALSATMSLGCTVEECFE------ILSALEYFS 542 Query: 608 AIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 + G N + D + +L + G+ + V + +V Sbjct: 543 -QDFGLETFVFLNGVIMGSTDSPKELIGELSVLKRAGDF-FWDCCFVFDEKHNEVRVNCD 600 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA----VDSGVTAVAK 719 LI L + + G + + + +G G+ + S + A+ Sbjct: 601 AGRLIRPLMVVEGGKLRFGPEHYERLMKGTITWQEFIGLGIVEILDAEQQEHSLICPSAE 660 Query: 720 RGGVVQYVDASRIVIKVNEDEMYP---GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 + G + + E++P I + S + + M S+ P Sbjct: 661 QLGQSE-------SKEWTHCEIHPLLVYGVCASIIPYSANNPSPRLSYFASMAKSSVAVP 713 Query: 777 --------------VERGDVLADGPSTD---LGELALGQNMRVAFMPWNGYNFEDSILVS 819 L ++ + + + QN+ VA ++G+ ED+I+ Sbjct: 714 RLDFGIAPFDQHVLHYPQKPLTSTKASRLLGMNKSPICQNLVVAVCSYDGFGQEDAIVAC 773 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 + Q + H+Q + K + ++ G +V Sbjct: 774 KAFTQRGGMVSDHVQNYVAIIDHEKEQISPSRCSDVEFSSSCQRFWCKN----CGKKV-- 827 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 K+ P+ ++ P + I K D + + VF Sbjct: 828 ------KLCPECGSEYVPSFSGHKGIVCRKKEDER----------RAFIDRQTVFWN--- 868 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 ++ ++ + +K++ + + L + L E +LD L + +E Sbjct: 869 -RNPINRIKRKVVVDGEEKEVDNQKKFL----GKKKWDCLCEEVEELPRLDHLDPEGVVE 923 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL-APGVLKIVKVYLAVKR 1058 +G E+ + + K E + KR ++T P ++V +A R Sbjct: 924 VGEVVEDGDILIAVAGVSGAKRKDESIYFGKDKRGRVTSVSYFQNPNGYLCIRVAVASTR 983 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENG---TPVDIVLNPLGVPSRMNIGQILET 1115 + GDK H KGV S +DMP+ + T D ++NPL PSRM IGQ E+ Sbjct: 984 IPETGDKATSFHSQKGVFSLFVEEQDMPFTSDAFSATHPDFLINPLAFPSRMTIGQPKES 1043 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 + G + A ++ + E+ L A ++++V + + +E+ + Sbjct: 1044 NTGK--------MTASAYRELPDSHRFEYENLYRTLSARIQKEVPEAEEAAKELEKRNPK 1095 Query: 1176 LR--KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 + G F +++ LK G+ DGRTG++ E + VG + Sbjct: 1096 TKGYSGSYTDCTPFTS-NYQVVEDELKRRGYAPGGKEFFIDGRTGKKMEVSLFVGLVPYN 1154 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 +L H+V DK+HAR+TG +T+QP G+++ GG + G ME +L GA + L++ L + Sbjct: 1155 RLKHMVIDKIHARATGKIQSLTRQPTEGRSRNGGLKTGIMERDSLVGNGAVFCLRDRLFL 1214 Query: 1294 KSDD----VNGRTK----------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 D V + ++ ++ +P + + +E+ ++GI + Sbjct: 1215 SCDKFEVWVCESCGLIAVESKEKKYCRACHGKSNVVKLAVPYATKLSFQELMAMGITPRI 1274 Query: 1340 EDE 1342 + Sbjct: 1275 LVK 1277 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 89/306 (29%), Gaps = 74/306 (24%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY---GLEAAFRSVF-----------PIQ 60 + Q+ ++ +F+++ G + P Sbjct: 9 WELFEFWFSQTGPAHHQIQAYNEFVQELLPNIIREKGRVEIDKEEETVEDDEEETVTPAA 68 Query: 61 SYSGNSE--LQYVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYERE 108 + +++ + G + + RG+ YSAP + + + Sbjct: 69 KKKRSWFQVVEFTNPVFGRVTHHEFDDRIKDIFPSDARRRGIPYSAPFYCDIFVTTAD-- 126 Query: 109 APEGTVKDIKEQEVYMGEIPLMTDNG--------------------------TFVINGTE 142 G + K+Q + EIP+M + F+I+ E Sbjct: 127 ---GETAEYKQQT--IAEIPVMVRSCLCNLTRYNLQGDECRQYGEDPMDKGGYFIID-RE 180 Query: 143 RVIVSQLHRSPGVFF---DSDKGKTHSSGKVLYNARIIPYRGSWLDFEF----DPKDNLF 195 V++S + G + D K +V RI + + + L+ Sbjct: 181 IVVISSERGAFGRVYTYADKQANKKMPKYEVHSEIRISATSNTRTTTVYVGLENGVAVLY 240 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 + + +P ++L A+N++ IL F K Q + L A F Sbjct: 241 AQHLSEKGIPLCVVLEAMNFSYLDILK-------FTKGLTKEQRGFLIPSLEHARAMFPS 293 Query: 256 EANGKV 261 +V Sbjct: 294 SRKNRV 299 >UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=Q9FXG4_ARATH Length = 1233 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 208/1412 (14%), Positives = 386/1412 (27%), Gaps = 289/1412 (20%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP 78 ++ L++ ++SF GL+ F + P+ Y N+E + + Sbjct: 14 EDFKELHNLVTHHIESFDYM------TLKGLDVMFNRIKPVSVYDPNTENELSNILF--- 64 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVI 138 Q +++ +I Sbjct: 65 ----------------------------FFVLNLLYGSCNVQFLFV----------LCLI 86 Query: 139 NGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV-----LYNARIIPYRGSWLDFEFDPKDN 193 + T + +P VF + +S K I Y G+++ ++ Sbjct: 87 SLTSMI---LWLENPLVFAPQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYND 143 Query: 194 LFVRIDRRRK--LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETA 251 V D+ P ++ + + L K Sbjct: 144 GVVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGG---------------- 187 Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 F + +V+ + E +D T +L Sbjct: 188 YFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYY 247 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV------------DPTNDR 359 N + + L I E+L T Sbjct: 248 LRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGDGAIGTQLV 307 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSE----DRYDLSAVGRMKFNRSLLREEIE 415 I +R TRE F + LS V L Sbjct: 308 RERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVKKESLSIVAEAVLRDYLFVH--L 365 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE----MAENQFRVGLVRV 471 + + +I +++KL + + D+ D L N+ I G + + L + Sbjct: 366 DNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKC 425 Query: 472 ERAVKERLSLGDLD---TLMPQDMINAKPISAAVKEFFGSS--------------QLSQF 514 + +K+ L + +I I +++ + + Sbjct: 426 KSLLKDELDNTNSKFSFESRKSLLILFSLIGTSIETLLKTGALKTQSGLDLQQRAGYTVQ 485 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 ++ N L ++ R A+ G VR + P +G +CP+ TP+G GL+N Sbjct: 486 AERLNFLRFLSFFR---AVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNH 542 Query: 575 LSVYAQTNEYGFLETPYR---KVTDGVVTDEIHYLSAIEEGNYVIA--QANSNLDEEGHF 629 ++ ++ + R K+ VV V A ++ +G Sbjct: 543 MTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQV 602 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 V L + S R +V+ V + + +P + + R Sbjct: 603 VGTLSSNLVTKVVSYIRRLKVEAPSVIPE---DLEVGYVPTSMGGSYPGLYLASCPARFI 659 Query: 690 VPTLRADKP---LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 P P + G VA + ++ G +Q + +I+ E+ + Sbjct: 660 RPVKNISIPSDNIELIGPFEQVANPINIIFISTFPG-IQSNEKKKILPNQVFMEISCPDG 718 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA-FM 805 G R+N + +T G VA Sbjct: 719 GNGG-------RNNSSL------------------------ATHEEIHPTGMISVVANLT 747 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PW+ +N + ++ ++ + + + L T P V Sbjct: 748 PWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQ----TPQSPVVRTKTY--- 800 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 T + +E P G + Sbjct: 801 ---------------------------TTYSIDEN--------------------PTGTN 813 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 V + D + E + + +E + + + + Sbjct: 814 AIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTN 873 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 + ++ D +G + E ++ +H K + D + Sbjct: 874 KAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKK 933 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVP 1104 + + R GDK + RHG KGV S++ P DMP++ G D+++NP P Sbjct: 934 HPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFP 993 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRM I +LE+ G ++A + E ++ L Sbjct: 994 SRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLL------------- 1040 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 ++ +LK G LY G G + + Sbjct: 1041 ---------------------------VDDLGSMLKEKGFNHYGTETLYSGYLGVELKCE 1073 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + +G +Y +L H+V DK RSTG +T QP+ G+ + GG RFGEME +L A+GA+ Sbjct: 1074 IFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGAS 1133 Query: 1285 YTLQEMLTVKSDDVNGRTK-----------------------------------MYKNIV 1309 Y L + L SD + Sbjct: 1134 YLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCK 1193 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 MP F L E+ S+ I + L+ Sbjct: 1194 TSKGMETVAMPYVFRYLAAELASMNIKMTLQL 1225 >UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae RepID=D1J787_ECTSI Length = 1139 Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 306/902 (33%), Positives = 449/902 (49%), Gaps = 65/902 (7%) Query: 213 LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR 272 ++ +I+ + R ++ +P L E +F +V + + R Sbjct: 88 MSLKKNEIIKKGIVQPEDFSRKERVFFGEIP--LLTEKGTFIFNGCERVIISQIIRSPGV 145 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 + +Q+ K+ E + G + + + + + + + L + Sbjct: 146 YYKQIIKEKKIFYEGTIISKYGSWLTFEL---EYNLIWVKFDKQYKIPINWFLVGLSLEE 202 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP--------PTREAAESL 384 E T + S + D++++ E +++ T + L Sbjct: 203 SEVYQTVQNFNFLIKSLSAIRLAIFDKMTSKSEKNKVVDKENHEAYNRNILLTVFRVQEL 262 Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 + YDL VGR+K N+ L L+ DI+ V+ KLI I ++DD Sbjct: 263 INQRLLDKGVYDLGEVGRIKLNKKLDIGLPLSRRTLTSLDILKVIDKLIHISFHNEKLDD 322 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE--------------------------- 477 ID+L NRR+RSVGE+ + Q RV L R+++ + Sbjct: 323 IDNLENRRVRSVGELLQLQVRVALGRIKKKINTDEKLTAEMFRIKKNKKRAGMKNSTPKK 382 Query: 478 ----------RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 R +TLMP +++N+K +++ ++EFFG S LSQ+ D+ N L+++THK Sbjct: 383 NKSTKKNQLGRKKKPQKETLMPNELLNSKVLTSVIREFFGLSPLSQYFDEVNALAQLTHK 442 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RRIS+LGPGGL E F RD+HPT YGR+CPIETPEG GLI SL+ +A+ N YGF+ Sbjct: 443 RRISSLGPGGLNSEHVSFAARDIHPTQYGRLCPIETPEGQKAGLIASLATHARINNYGFI 502 Query: 588 ETPYRKVTDGVVTDEI--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 TP+ +V G V E+ YL+A +E Y +A + L + F +V RS E Sbjct: 503 TTPFFRVYKGKVLYELGPVYLTAEQEATYNVASGDVLLTRDNFFRTKIVPVRSFNEFITV 562 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 V+++ VS Q+++VGASLIPFLEHDDANRALMG+NMQRQAVP L KP++GTG+E Sbjct: 563 DAINVNFLAVSPIQILAVGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIE 622 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 +A DS V + G++ V + RI I N +Y L KY RSNQ T I Sbjct: 623 HQIAADSQVVLINLLDGIIDSVCSDRITIIDN-----KYLGSSKMYFLDKYRRSNQETII 677 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 NQ P + GE VE G ++ADGP T+ GELALGQN+ VA+MPW+GYNFED+ILVS+R+VQ+ Sbjct: 678 NQKPLIWNGEIVEPGQIIADGPGTEGGELALGQNLTVAYMPWDGYNFEDAILVSDRLVQD 737 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 D FT+IHI++ D EEIT IPN+ E + LD +GI+ G V GGDILVG Sbjct: 738 DLFTSIHIEKYELQLMDESDTIEEITTSIPNIEEEEIINLDMNGIIKKGTFVNGGDILVG 797 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKR 944 K+TP E PE KLLRAIF ++ + +DSSLRVPNGVSG VI++Q +R+ G Sbjct: 798 KITPILEEDELPESKLLRAIFNIESPEPEDSSLRVPNGVSGRVIEIQTASREKGDNLGSG 857 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 E + + Q KK + G I ++ + + LG+ Sbjct: 858 IYEWVCISIAQIKKIRIGDKLSGRHGNKGVISKIIPTDDMPFLPDGTIVDVILNPLGVPS 917 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 Q+ E F +R K+ D++ + + A+K+ + D Sbjct: 918 RMNVGQI-------FECLLGFAGDYLNRRFKVIPFDEMYKPNASRILINKALKKAAKETD 970 Query: 1065 KM 1066 K Sbjct: 971 KC 972 Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 82/416 (19%), Positives = 160/416 (38%), Gaps = 20/416 (4%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYR 74 K+ + +P L +Q SF F+ + GL + I + + EL Y+ Sbjct: 9 KQKSPIILPDLSEVQRISFCWFLTE------GLPEELTNCPSILNQNSGIELIIYGQEYK 62 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD--IKEQEVYMGEIPLMTD 132 + P F + + Y+ + V + L E + +++ V+ GEIPL+T+ Sbjct: 63 IYYPGFALLNALTKKGNYNLRIYVLMSLKKNEIIKKGIVQPEDFSRKERVFFGEIPLLTE 122 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 GTF+ NG ERVI+SQ+ RSPGV++ + K+ Y II GSWL FE + Sbjct: 123 KGTFIFNGCERVIISQIIRSPGVYYKQIIKEK----KIFYEGTIISKYGSWLTFE-LEYN 177 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 ++V+ D++ K+P L L+ ++ + +++ + + + Sbjct: 178 LIWVKFDKQYKIPINWFLVGLSLEESEVYQTVQNFNFLIKSLSAIRLAIFDKMTSKSEKN 237 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 ++ + +T +++L + V G++ +D L + Sbjct: 238 KVVDKENHEAYNRNILLTVFRVQELINQRLLDKGVYDLGEVGRIKLNKKLDIG---LPLS 294 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS-ALVEIYRMMR 371 SLD+L + + H +D+D+ + ++ AL I + + Sbjct: 295 RRTLTSLDILKVIDKLIHISFHNEKLDDIDNLENRRVRSVGELLQLQVRVALGRIKKKIN 354 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 E T E K N+ L R++ L +++++ Sbjct: 355 TDEKLTAEMFRIKKNKKRAGMKNSTPKKNKSTKKNQ-LGRKKKPQKETLMPNELLN 409 >UniRef50_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SHS2_RICCO Length = 1139 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 192/1386 (13%), Positives = 400/1386 (28%), Gaps = 334/1386 (24%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 K F P+ L V L+ LDSF F+ G++ R+ I S Sbjct: 32 KSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV------NIGIKKIVRANDRIVSTVD---- 81 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 P ++ ++V +G Sbjct: 82 ---------PGIY-----------------------------------LRFKDVRIG--- 94 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 T + +++G + + R + + + + +Y + R Sbjct: 95 --TPSD--IMDGVSEQLSPHMCRLSDKTYAAPIL---VNVEYIYGSHDQKTR-------V 140 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 + D + R +P + R+ ++ ++ + E Sbjct: 141 EKNDVVIGR------MPIMLRSRSCVLYG----------------KDEAELARLGECPLD 178 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 F I+ KV + + + R I +K V A K +++ Sbjct: 179 PGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMY 238 Query: 309 LIC--AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD---PTNDRLSAL 363 L + ++ + + + + D + + ++ + AL Sbjct: 239 LCLNQFVKKIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKAL 298 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 + L+ V K N Sbjct: 299 EYLDGKE---------------NRALTILRDVFLANVPVHKNNFRP-----------KCL 332 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL---- 479 + +++++++ K +DD D++GN+R+ G++ F + V+ + Sbjct: 333 YVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQRTIDTVL 392 Query: 480 -SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITH 526 I I+ ++ + +Q + + + ++ + Sbjct: 393 TKQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMHRKGMTQVLVRLSYIASLGM 452 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 R+S + R R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 453 MTRVS----PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDDE 508 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEE---GNYVIAQAN---SNLDEEGHFVEDLVTCRSKG 640 E P + + +++ LS E ++++ +FV + R G Sbjct: 509 -EGPLISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQYFVNSMRKLRRAG 567 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + F V+ + + S G + L D + + + ++ +R + Sbjct: 568 KIGEFVSVFVNEKQRAV-YLASDGGRVCRPLVIADRGVSRIKEHHMKELRDGVRTFDDFL 626 Query: 701 GTGMERAVAV-DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 G+ + V + VA G + E+ P Sbjct: 627 RDGLIEYLDVNEENNALVALYEG--------EATPETTHIEIEPFTILG----------- 667 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 + +P+ +N Sbjct: 668 ----------------------------------------VCAGLIPFPHHNQSPRNTYQ 687 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 + ++ + R L + P + + + +GA Sbjct: 688 CAMGKQAMGNI----AYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYD---KLGA---- 736 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS---GTVIDVQVFTR 936 + A+ D++D+ + + G I ++ + Sbjct: 737 ------------------GQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPA 778 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 + + A + + +++ ++L+ + ++ + +K + Sbjct: 779 IRQKYENGASDRILRPDRTVERE-----RVLDYDGLAAPGEIIKPSDIYVKKECPIDTMG 833 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 ++ E + + L ++ +KV + Sbjct: 834 PVKSSAALENIKYRPSPL---------SYKGPEGESPVIDRVALSSDRNNNLCIKVMIRH 884 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 RR + GDK + RHG KGV I ED P+ E G D+++NP G PSRM +G+++E Sbjct: 885 TRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELL 944 Query: 1117 LGMAAKGIGDK-----INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 G A G V + E + Sbjct: 945 GGKAGVSCGRFHYGSAFGEPSGHADTVEAISETLVNRGFSYNGKDIIYSGI--------- 995 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 G P+ +F G +Y Sbjct: 996 ------TGCPLQAYIFMG---------------------------------------PIY 1010 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 KL H+V DKMHAR G ++T+QP G+A+ GG R GEME L AYGA+ + E L Sbjct: 1011 YQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERL 1070 Query: 1292 TVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 + SD + + +G++ +P + +L++E++S+ I Sbjct: 1071 MISSDPFEVQVCRVCGLLGYFNQKLRAGICSTCKNGDNISTMKLPYACKLLIQELQSMNI 1130 Query: 1336 NIELED 1341 L+ Sbjct: 1131 VPRLKL 1136 >UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae AF16 RepID=A8WJV6_CAEBR Length = 1160 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 197/1280 (15%), Positives = 378/1280 (29%), Gaps = 244/1280 (19%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F + + S + + + + ++LD Sbjct: 39 RGLVKQHLVSFDHFVNVEIRNIMLSNQKITSDANPNFHLTYLDIRVGK------------ 86 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET------------ 250 P+ LR + Y+ +D+ + + + L + +P LR Sbjct: 87 --PSKCRLRDMTYSAPISVDIEYTRGHQRVYKKDLVIGRMPIMLRSSKCILRDLAEEELA 144 Query: 251 ----------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 F ++ + KV + + + R + +L + + + Sbjct: 145 RVQECPHDPGGYFVVKGSEKVILIQEQLSKNRIMVG-RNSSKELQCEVLSSTSERKSKTY 203 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRVD 354 + + + + + G + + + Y+ E Sbjct: 204 VTVKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEECINA 263 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 + AL + ++ + + ++ + AV + + Sbjct: 264 GVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTAPKE--HEAVDFLSNSMITHIACP 321 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 +G+ + + + ++LI G+ E+DD D GN+R+ G + F R Sbjct: 322 DGNFKMKAIYLGQMTRRLIQTEMGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSE 381 Query: 475 VKERLSLGDLDT----LMPQDMINAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEITHK 527 +K + T L + I+ + + +F M++ ++ Sbjct: 382 LKRIADNALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRL 441 Query: 528 RRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ISALG + R R + P+ +G +CP +TPEG GL+ +L++ + Sbjct: 442 SYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHIT 501 Query: 583 EYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLD----EEGHFVEDLVTC 636 E P ++ +++H + S + + + N L + V+ + Sbjct: 502 TD-SDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDL 560 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R G S F + S S G L + ++ ++ R Sbjct: 561 RRSGLLSEFVSVSRSMTNRSVFI-SSDGGRLCRPYIIVRHGKPMLTETHVQELKEGKRIF 619 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 + V G+ + V+ A V + I + E+ P L Y Sbjct: 620 EDFVDDGIVEYLDVNEMN--DALIA-----VYENEIGAETTHLEIEPFTLLGVCAGLIPY 672 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 NQ P + +G+ A+G + +N DSI Sbjct: 673 PHH------NQSPR--------------NTYQCAMGKQAMGT------IAYNQQKRIDSI 706 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL--DESGIVYIG 874 + Q + I+ KL +GI+ + Sbjct: 707 MYLLCYPQRPLVKSKTIEL------------------------TNFEKLPAGANGIIAVM 742 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 + + E+ L+ + + G + + Sbjct: 743 SY----------------SGYDIEDALVLNKASLDRGYGRCLVYKHVKGT------AKKY 780 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 ++ K ++ I+ G + ++ + + Sbjct: 781 PNQTYDRLLGPAVDSVTLKPIFKHKNLDQEGIVFTGARILPKQTIINKYMPVVSAESGSA 840 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 +G+ + + + + D+ + KV L Sbjct: 841 ASANTIGIAGRDVAYKDVSI------TYKTPTPSYAERVLLTYNEDE-----AHLFKVLL 889 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 RR + GDK + RHG KGV I EDMP+++ G D+++NP G PSRM +G+++E Sbjct: 890 RQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLME 949 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 G A G +V + E + T Sbjct: 950 LLSGKAGVMNGTYHYGTAFGGDQVKDVCEELAARGYNYMGKDMLTSGITGQPLSA----- 1004 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 G +Y K Sbjct: 1005 -----------------------------YIYFG--------------------PIYYQK 1015 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+V DKMHAR+ G + +T+QP G+++ GG R GEME L AYGA+ L E L V Sbjct: 1016 LKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVS 1075 Query: 1295 SD---------------------------DVN------GRTKMYKNIVDGNHQMEPGMPE 1321 SD DV G + +P Sbjct: 1076 SDEFKVLFRSFVPLIPIEVFFVRRCFQCVDVCTGCGVIGSKGWCQKCRSSKSMANIKIPY 1135 Query: 1322 SFNVLLKEIRSLGINIELED 1341 + +L +E++S+ I L+ Sbjct: 1136 ACKLLFQELQSMNIVPRLDL 1155 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 133/1038 (12%), Positives = 295/1038 (28%), Gaps = 158/1038 (15%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSEL 68 ++ + P L V L+ L SF F+ + S I + N L Sbjct: 24 PLKDKWLLVPAFLKVRGLVKQHLVSFDHFV------NVEIRNIMLSNQKITSDANPNFHL 77 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 Y+ R+G+P +C++R +TYSAP+ V + + + ++++ +G +P Sbjct: 78 TYLDIRVGKPS----KCRLRDMTYSAPISVDIEYT--------RGHQRVYKKDLVIGRMP 125 Query: 129 LMTDNGTFV------------------------INGTERVIVSQLHRSPGVFFDSDKGKT 164 +M + + + G+E+VI+ Q S Sbjct: 126 IMLRSSKCILRDLAEEELARVQECPHDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSK 185 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDL 223 +VL + R S +P +II +A+ + I+ Sbjct: 186 ELQCEVLSST---SERKSKTYVTVKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVST 242 Query: 224 FFEKVIFE----IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEK 279 + + + V + + A + + + G Sbjct: 243 IGHEEKYVSAFAQTLEECINAGVYTQ-QQALAYVTSKVKARKFTPFGSLPGTSVSVLTAP 301 Query: 280 DDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL--AKLSQSGHKRIETLF 337 + + ++ + + D + + L + +L + L Sbjct: 302 KEHEAVDFLSNSMITHIACPDGNFKMKAIYLGQMTRRLIQTEMGENELDDRDFYGNKRLE 361 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 + + + + A + + M + + + N + Sbjct: 362 LAGSLLALLFEDVFKRFNSELKRIADNALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGN 421 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR--IRS 455 + R + R + LS + +M ++ +V L + + Sbjct: 422 WIIKRFRMER---LGVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLC 478 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 + E + GLV+ + ++ + + + ++N+ E + S Sbjct: 479 PSDTPEGE-ACGLVKNLALIS-HITTDSDEKPVLRLLLNSGV------EDLHNVHFSHVN 530 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 N L + L + ER VRD+ + G + + + S+ Sbjct: 531 KPENTLIFLN-----GVLIGTAVDPERVVKAVRDLRRS--GLL-------SEFVSVSRSM 576 Query: 576 SVYAQT--NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF--VE 631 + + ++ G L PY V G + E + D + V Sbjct: 577 TNRSVFISSDGGRLCRPYIIVRHGKPM--LTETHVQELKEGKRIFEDFVDDGIVEYLDVN 634 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 ++ + ++++ ++ V A LIP+ H+ + R M +QA+ Sbjct: 635 EMNDALIA-VYENEIGAETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAM- 692 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 G + Y RI + Sbjct: 693 ------------------------------GTIAYNQQKRIDSIMY-------------- 708 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 C Q P V T+ +L G N +A M ++GY+ Sbjct: 709 ----------LLCYPQRPLVKSKTI----------ELTNFEKLPAGANGIIAVMSYSGYD 748 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI-----TADIPNVGEAALSKLD 866 ED++++++ + + + + ++ + + LD Sbjct: 749 IEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTYDRLLGPAVDSVTLKPIFKHKNLD 808 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 + GIV+ GA + ++ K P + + KD S+ Sbjct: 809 QEGIVFTGARILPKQTIINKYMPVVSAESGSAASANTIGIAGRDVAYKDVSITYKTPTPS 868 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 V + + + L + + + K S Q GL ++ + Sbjct: 869 YAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMV 928 Query: 987 EKLDKLPRDRWLELGLTD 1004 + P + + Sbjct: 929 PDMIMNPHGYPSRMTVGK 946 >UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0EG45_ENTDI Length = 1170 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 193/1158 (16%), Positives = 365/1158 (31%), Gaps = 211/1158 (18%) Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE-------VPVEYIAGKV 296 E + F I+ + KV + + + + D +K + + Sbjct: 164 ECSFEQGGYFIIKGSEKVVIAQEKMAPNTVLVFEGSDQLKYPYEGNINSLASNDEVRTHK 223 Query: 297 VAKDYID------ESTGELICAANMELSLDLLAKLSQSGHKRIETLFT------NDLDHG 344 + DY + ++ + M+ + ++ G++ + + ND + Sbjct: 224 IRMDYPKLDKSRLKIKVPVLTLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMY 283 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 ++ ++ + A + GE + E + E + + + L G K Sbjct: 284 NIVTTAIQANECTTTEDARRWL------GEHSKKTNKEGVIEIVSENIQK--LQRDGTEK 335 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 + LL + + + + + GK DD DHL +R+ G + F Sbjct: 336 LKKDLLPHIGTDNFESKAQFLGYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELF 395 Query: 465 RVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGSSQL----------- 511 + L R+ + + +L TL ++ I++ + G+ Sbjct: 396 KNSLKRMMKTARAQLQKQLSSNKTLEYAKPLSFPTITSDFTKALGTGNWPQPGGKESRHG 455 Query: 512 -SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 +Q + + S + + R+IS+ G +R + R +H T +G +CP ETPEG + G Sbjct: 456 VAQVLSRLTFTSALAYLRKISSPVEG----KRKTQKPRQLHNTQWGYICPAETPEGESCG 511 Query: 571 LINSLSVYAQTNEYGFLETP--YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE--- 625 L+ LS+ AQ E ++ D I+ + + N N + Sbjct: 512 LVKMLSLMAQITVALQDEQVDEIKEALDCQYVCNINDCTGEKMNNITKVFLNGVWLKCSE 571 Query: 626 -EGHFVEDLVTCRS---KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 +E+L R KG+ V ++ + L N Sbjct: 572 QPQKLLEELKNYRKNSTKGKVKKVMS-MVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHY 630 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 N+++ + L + G E+ G+++YVDA + + M Sbjct: 631 TLNLKQSQITELCSRLDNESNGTEKTKF-----WNNFLSKGIIEYVDADEEEMSM--IAM 683 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 +P + G + P+ +G + Sbjct: 684 FPSDLDNT-----------------------EGGSSKNYTHCEIHPALVMG-------VL 713 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 + +P+ +N S + + + ++ R LG P V A Sbjct: 714 GSIIPFPDHNQ--SPRNTYQCAMGKQAIGVYASNY--QLRLDSLGHVLFYPQKPLVSTRA 769 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 V G I + A+ + +DS + Sbjct: 770 AE------------YVKFGHI-------------PAGINAIVAVCCYSGYNQEDSVMMNQ 804 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA 981 + + F + A + E +L K + + + ++ Sbjct: 805 GSIDRGLFRSMAFKTFSED----AKKSETTELMFFKPSENNSEITEDISKYEKVD----V 856 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 G+ A P D + ++ K + L + E Sbjct: 857 DGILAPGTKVKPDDILVAGFYENKNKTLKDCSLRYKPRENG-----------VVDQVVVT 905 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 A K ++V + R Q GDK + RHG KG + EDMP+ G DI++NP Sbjct: 906 NAQSGTKYIRVKMRSIRIPQIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNP- 964 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 H + +G + +L + Sbjct: 965 --------------HAIPSRMTVGQLVECLLGK--------------------------- 983 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVF-DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 G + F +I E L G L+ G TG + Sbjct: 984 ------------VGALVGDVQSGTPFQKDITVDKIGERLHKLKYQRRGYEALFSGHTGRK 1031 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + V +G Y +L HLVDDK+H R+TG Y+ +T+QPL G+++ GG R GEME + + Sbjct: 1032 LDSLVYIGPTYYQRLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMIS 1091 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFN 1324 +G + L+E L + SD D H + +P + Sbjct: 1092 HGVSSLLKERLFLASDKYQIYVCDKCHMPAVANHKACTFQCSCCKDKTHISKVDIPYACK 1151 Query: 1325 VLLKEIRSLGINIELEDE 1342 +L +E+ S+ + + E Sbjct: 1152 LLFQELMSMAVCPRIYTE 1169 Score = 80.3 bits (196), Expect = 5e-13, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 109/376 (28%), Gaps = 58/376 (15%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQ----DPEGQYGLEAAFRSVFPIQSYSGN-SEL 68 + L+ QL S+ FI++ +E + V I + + Sbjct: 15 FWYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEISNAEVLGISANDEEEHTI 74 Query: 69 QYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 P E ++R +TY+ L VK + I + E T Sbjct: 75 VLTDPIFHFPKVSTGSKASASLFPHEARLRSLTYACQLEVKAKDTIRKNGTEEITT---- 130 Query: 119 EQEVYMGEIPLMTDNG-------------------------TFVINGTERVIVSQLHRSP 153 ++ + IP M + F+I G+E+V+++Q +P Sbjct: 131 VPKIDIASIPSMLKSDVCRLKRCVTQPSMISKDECSFEQGGYFIIKGSEKVVIAQEKMAP 190 Query: 154 GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR---KLPATIIL 210 + K Y I + + + ++D+ R K+P + Sbjct: 191 NTVLVFEGSDQL---KYPYEGNINSLASN-DEVRTHKIRMDYPKLDKSRLKIKVPVLTLS 246 Query: 211 R-ALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 R + + + +I + E E + I+AN E RR Sbjct: 247 RMDCDVPVVLLFVALGYENDQKIVEAICFDENDNE--MYNIVTTAIQANECTTTEDARRW 304 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 H ++ K+ V I + + +D ++ +L+ + L Sbjct: 305 LGEHSKKTNKEGVIEIVSENI----QKLQRDGTEKLKKDLLPHIGTDNFESKAQFLGYMT 360 Query: 330 HKRIETLFTNDLDHGP 345 + + Sbjct: 361 NHFLSVYTGKRNGDDR 376 >UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota RepID=Q5CSG7_CRYPV Length = 1281 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 204/1447 (14%), Positives = 397/1447 (27%), Gaps = 318/1447 (21%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQI 87 + ++SF F+ GL+ +++ I SG + L + E Sbjct: 13 VWPHIESFNTFL------SVGLKNIVKNLPKIYVDSGFIQ---DDCELNA-AYSPAE--- 59 Query: 88 RGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVS 147 +++ + + P + +GT Sbjct: 60 ---------YLRIGVTSAKIGKPIFGNSES---------------------SGT------ 83 Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID--RRRKLP 205 + +G + Y+A + WL+FE V +P Sbjct: 84 -----------KLTPQHARNGHISYSAPL------WLEFEGYNSSLDTVSKHSIYAGTIP 126 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 + + + +L + F I N +V Sbjct: 127 IMVKSSSCHLFGLGTKELVEKGEDPNEVGG----------------YFIINGNERVIRYV 170 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 ++ I EY +D + L ++ + +L Sbjct: 171 IQQRCNYPIGLKRPRFATFDSFGSEYAVLMRSLRDDGTSTANYLYGTSDHQCIYRVLLNR 230 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR-------------- 371 + L + + + + N + L M+ Sbjct: 231 QEWLIPFWPLLMAVGSIYDSNVLRSKILQYCNPKDENLFNTINMLTLEWGLDNSVGVDAE 290 Query: 372 ----------PGEPPTREAAESLF-------ENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 PG+ E F L GR + +L Sbjct: 291 FNSVSFGNKGPGDTDILENRYLHQIGRLVWEGVAFHLPPGSLLQEAGRFLIDNYVLVHLE 350 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 E + + +I + KLI ++ + + ID + + S G + F+ + + Sbjct: 351 EWN--AKLECLILMFIKLIKLQLNEIREESIDSFAYQELLSPGNLYSALFKDAIFSFLQK 408 Query: 475 VK-------------ERLSLGDLDTLMPQDM-------INAKPISAAVKEFFGSSQ---- 510 ++ + + L+ N I ++ F + Sbjct: 409 IRSTYLIEIRSKSGEKNKESKNGVNLLRDTAYFKSVLSKNISMIPKRLQYFMATGNVKTT 468 Query: 511 ---------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 + D+ N ++H R A+ G +VR + +G +CP+ Sbjct: 469 QLDLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMKTTDVRKLTGETWGFLCPV 525 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI------------------ 603 TP+G GL+ LS + R++ + +++ I Sbjct: 526 HTPDGEPCGLLLHLSQDCIPVTQWDSQETLRRLRNYLISHGISCDDGLGSLSSTWGIESS 585 Query: 604 ---HYLSAIEEGNYVI-----AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 S + + + ++ + L T + + + V Sbjct: 586 SRDDLYSPDLTKSIPVMLDGRVLFHIPREDFMVWENKLRTLK-WQTNPSVLPVHAEIACV 644 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAVDSG 713 + + + F R +M + P + + T E + Sbjct: 645 PP--DSGMFSGIYIFTAPGRLVRPIMHLETAQVDWIGPLGQPWMNIGVTEEETRKSTKLL 702 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 I I E E + L K + + ++ +P Sbjct: 703 EIQKRL------------IGISDTESEEQLKNDLKALKKLIK----DNDRVLSSVPVNYT 746 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 + +L+ S +P+ +N + +++++ T Sbjct: 747 HMELHPSTILSVTASL---------------IPYAHHNQSPRNMYQCQMLKQTMGTPCLN 791 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 ++ +L +T P I+ + G + Sbjct: 792 HPYRTDNKMYRL----LTPQEP-------------------------TIITKGYSSFGFS 822 Query: 894 QLTPEEKLLRAIFGEKASDVKDS-----SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 + + A+ D++D+ S V ++ + + + Sbjct: 823 EYPTGTNAIVAVMSYSGYDMEDAMILNKSSYDRGMFHACVYKTKIISA-APPSATKKSDA 881 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 E D ++ L A I L G + Sbjct: 882 ESYFFHNIGPDGELVVKELSADGLPNIGQRLTKGSPICRVERIGSGGGPSNATIQTYHDD 941 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 E + ++ G + G + V + L + R GDK A Sbjct: 942 EVAFVEKINRIASGISIELQQDSLSGGGGDGASSSSGYGEKVSIKLRIVRNPMVGDKFAS 1001 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK- 1127 RHG KG++S + P E+MP+ E+G DI+ NP G PSRM IG +LE+ G AA G + Sbjct: 1002 RHGQKGILSMLWPQENMPFSESGMVPDILFNPHGFPSRMTIGMLLESMGGKAACIHGARS 1061 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 ++A L + D A Sbjct: 1062 LDATPFNINISDDLSRSEENCEDDKAGE-------------------------------- 1089 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 + L+ G LY+G TG + + +G +Y +L H+V DK R+ Sbjct: 1090 -KTTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQRLRHMVADKAQVRA 1148 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK---- 1303 TG +T+QP+ G+ + GG RFGEME +L +YG + L + L + SD+ Sbjct: 1149 TGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSILVDRLLICSDEHRAYVCPKCG 1208 Query: 1304 ----------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 + + +P F L E+ ++ I Sbjct: 1209 LIISSISKRAMAQSMSSSKLSNCIPPIAVCRVCKSPCRI--ITLPYIFRYLSNELAAMNI 1266 Query: 1336 NIELEDE 1342 I L + Sbjct: 1267 VIRLHLQ 1273 >UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=Archaea RepID=RPOB_SULAC Length = 1126 Score = 532 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 223/1274 (17%), Positives = 409/1274 (32%), Gaps = 252/1274 (19%) Query: 141 TERVIVSQLHRSPGVFFDSDKGK-THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 R +V Q S F + + + G+++ + + + +E P + Sbjct: 16 KTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEVPGLKIKLGKIRYE-KPSIRETDKGP 74 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG----------- 248 R P LR L Y++ L + + E ++ + +P L+ Sbjct: 75 MREITPMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKSVADPTSNLPID 134 Query: 249 -----------ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV--EYIAGK 295 F + + KV + + T R + K + V AG Sbjct: 135 KLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGY 194 Query: 296 VVAKDYIDESTGELICAA----NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 V + + ++ L + I + D + +L Sbjct: 195 RVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQNELLPSL 254 Query: 352 RVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 AL I + G + E+ + D+Y L +G Sbjct: 255 EQASSITSAEEALDFIGNRVAIG-----QKRENRIQKAEQVIDKYFLPHLG--------- 300 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + + K++++ G+ E DD DH N+R+R G++ + FRV Sbjct: 301 --TSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKA 358 Query: 471 VERAVKERLSLGD--LDTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPL 521 + + +L L ++ A I+ ++ + SQ +D+ N L Sbjct: 359 FVKDLVYQLEKSKVRGRRLSLTALVRADIITERIRHALATGNWVGGRTGVSQLLDRTNWL 418 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 S ++H RR+ + L R + FE RD+H T +GR+CP ETPEGPN GL+ +L++ AQ Sbjct: 419 SMLSHLRRVVS----SLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQV 474 Query: 582 NEYGFLETPYRKVTDGVVTDE----IHYLSAIEEG-----NYVIAQANSNL----DEEGH 628 + G E+ +V + I +S E ++ N L ++ Sbjct: 475 SV-GINESVVERVAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKE 533 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 + + R +G+ D+V+ ++T + N + + R Sbjct: 534 LAKKIRESRRQGKL----SDEVNVAYIATDYL----------------NEVHINCDAGRV 573 Query: 689 AVPTLRADK--PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 P + + PLV T + + + G ++++DA Sbjct: 574 RRPLIIVNNGTPLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAY---------- 623 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 L + +T + P LG + + +P Sbjct: 624 ----VALNPQDLTPDHTHLEIWPSAILG-------------------------IIASIIP 654 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 + +N + ++ ++ R +P V L Sbjct: 655 YPEHNQSPRNTYQSAMAKQSL--GLYASNYQI--RTDTRAHLLHYPQMPLVQTRML---- 706 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 G + AI +++DS + + + Sbjct: 707 ---------------------GVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIER 745 Query: 927 TVIDVQVFTRDGVEKDKR----ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 + F E+ K +I + + ++LE + G Sbjct: 746 GMYRSTFFRLYSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGG 805 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 V K+ + + ++ K + + ++ E Sbjct: 806 DVLIGKVSPPRFLQEFKELSPEQAK--RDTSIVTRHGENGIV-----------DLVLITE 852 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 K+VKV + R + GDK A RHG KGV+ + DMPY G DI+LNP Sbjct: 853 TLEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNP-- 910 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 H + IG + A+ + Sbjct: 911 -------------HALPSRMTIGQIMEAIGGKYA-------------------------- 931 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVF-DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 G P+ F + K E+++ + +YDGRTG++ Sbjct: 932 -------------ALSGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKL 978 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + + G +Y KL+H+V DKMHAR+ G ++T+QP G+A+ GG RFGEME L + Sbjct: 979 KSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGF 1038 Query: 1282 GAAYTLQEMLTVKSD-------DVNGRTKMYKNIVDGNHQM---------EPGMPESFNV 1325 G A +++ L SD D G Y + + +F + Sbjct: 1039 GTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKL 1098 Query: 1326 LLKEIRSLGINIEL 1339 L++E+ S+ I+ L Sbjct: 1099 LIQELMSMVISPRL 1112 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 76/237 (32%), Gaps = 50/237 (21%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + L+ LDSF F+ L+ I + +++ R Sbjct: 8 WAIAESFFKTRGLVRQHLDSFNDFLRNK------LQQVIYEQGEIVTEVPGLKIKLGKIR 61 Query: 75 LGEPV-----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +P E ++R +TYS+P+ + + V E E+Y Sbjct: 62 YEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENNIEGEPI--------EIY 113 Query: 124 MGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDS 159 +G++P+M + G F++NG+E+VI++Q + Sbjct: 114 IGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVD 173 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR-KLPATIILRALNY 215 + V + E + + ++P II+RAL + Sbjct: 174 YGKSGSNITHVAKVTSSAAGYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGF 230 >UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyceta RepID=B9WJL4_CANDC Length = 1166 Score = 529 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 188/1291 (14%), Positives = 363/1291 (28%), Gaps = 297/1291 (23%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF-----DPKDNLFVR 197 RV QL P V + + R++ YR S L D ++ VR Sbjct: 80 RVDSVQLA-KPSVPANDKLSLNRKTFPSECRERMVTYR-SRLMLNVTWSVNDGEEVSEVR 137 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFD 254 ++P + + L K + + + + +R + + Sbjct: 138 --EAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHP 195 Query: 255 IEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + +G T IR + D V G V + ++ + Sbjct: 196 MAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPVV 255 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 ++ ++ + G +T + D + T + + L + R Sbjct: 256 MILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRV 315 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 + + ++ VG+ R +L + ++ +++KL Sbjct: 316 VFGASPDMSD---------------IEVGKEVLKRIVLVHLP--NNTDKFRMLLFMIRKL 358 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG---------- 482 + G D+ D ++ + G + + + + +K ++ Sbjct: 359 YSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFD 418 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKR 528 D + + I ++ F + L + ++ N I+H R Sbjct: 419 DRKYMTRVFSRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFR 478 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 + G E VR + P +G +CP+ TP+G GL+N LS + Sbjct: 479 MV---HRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDV 535 Query: 589 TPYRKVTDGVVTDEIHYLS------AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 + K + + ++ ++ + ++ + L + G Sbjct: 536 SQVPKALTQLGVLPADSFAAGPNLCCVQLDGRIVGW--TTHEQGRIVADTLRYWKVNGGH 593 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 L ++ Y +P + R P + Sbjct: 594 GLPLDLEIGY---------------VPPSNKGQYPGLYIFGGRSRMMRPV-----RYLPL 633 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 E V V + P E +I++ ++T +N Sbjct: 634 DKEDIVGPFEQVYMNV---------------------AVTPEEIENNIHSHVEFTPTNIL 672 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 + + P++ +N + ++ Sbjct: 673 S------------------------------------ILANLTPFSDFNQSPRNMYQCQM 696 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 ++ T ++ +L T P V Sbjct: 697 GKQTMGTPGTALVHRSDNKLYRLQ----TGQTPIVKANLYDDYGMDNFP----------- 741 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 + AI + D + D + + E+ Sbjct: 742 -----------------NGMNAIVAVISYTGYD------------MDDAMIINKSADERG 772 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + + + + I + F +KL D +G+ Sbjct: 773 FGYGTVYKTEKVDLSQSRRRGDPITQHFGFG-------TDEWPEAWKEKLDADGLPLIGV 825 Query: 1003 TDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 EE + L + + H E + + + GDD + + + + R Sbjct: 826 KVEEGDPIVAYYDDTLGKTKVKTYHSSEPGYIEEVKLL--GDDSNEQEGQQITIKYRITR 883 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 + GDK + RHG KGV S+ P DMP+ E+G D+++NP PSRM Sbjct: 884 QPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMT---------- 933 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 IG + ++ A GA D + + E A Sbjct: 934 -----IGMFVESL----------------AGKAGALHGIAQDSTPWKFNEQDTPA----- 967 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 E L G +Y G TGE+ + +G +Y +L H+ Sbjct: 968 --------------DYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHM 1013 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD- 1297 V+DK RSTG + +T QP+ G+ + GG R GEME AL +G ++ LQ+ L SD Sbjct: 1014 VNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYT 1073 Query: 1298 ---VNGRTKM------------------YKNI-------------------------VDG 1311 V + V G Sbjct: 1074 QTPVCRSCGSILTTQTSVPRIGSMASIRCRRCAVSLDKYEGYAADSDIWEDGHGKKFVGG 1133 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +P L E+ ++GI + E Sbjct: 1134 DDTTTVAIPFVLKYLDSELSAMGIKMRYNVE 1164 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 59/423 (13%), Positives = 130/423 (30%), Gaps = 74/423 (17%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIE-------QDPEGQYGLEAAF 53 + +R ++ + P L ++ + SF ++ G + F Sbjct: 5 KFRTLEREKRFQNPPKDMNSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGTKTIF 64 Query: 54 RSVFPIQSYSGNSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLRVKLR 101 + +++ S +L +P EC+ R VTY + L + + Sbjct: 65 DTPETSGRLGNKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVT 124 Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG------------------------TFV 137 + + E + G+IP+M + F+ Sbjct: 125 WSVNDGEEVSEVREA--------GQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFI 176 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDP 190 +NG E++I + + + + Y I R D + Sbjct: 177 VNGIEKLIRMLIVQRRNHPMA-IIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLN 235 Query: 191 KDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 N+ R R+ +P +IL+AL T + F+ ++ +N + + LR Sbjct: 236 DGNVTFRFSWRKNEFLVPVVMILKALIETND---REIFDGIVGNDTENSFLTDRLELLLR 292 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 ++++ + + G + D+ IEV E + V+ + Sbjct: 293 TYK-TYNLYSQQETLAYLGDKFRVVFG---ASPDMSDIEVGKEVLKRIVLVHLPNNTDKF 348 Query: 308 ELICAANMELSLDLLAKLSQSGH--KRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 ++ +L + + + + + +G I E + N +L + Sbjct: 349 RMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSD 408 Query: 366 IYR 368 I R Sbjct: 409 INR 411 >UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomycetales RepID=C4QY42_PICPG Length = 1165 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 175/1240 (14%), Positives = 343/1240 (27%), Gaps = 289/1240 (23%) Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RL 246 I ++P + + +L K + + + + L Sbjct: 126 NDGPEETEIREAGQIPVMLKSNRCHLEKMSPNELVKNKEESDELGGYFIVNGIEKLVRML 185 Query: 247 RGETASFDIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 + + + + +G T IR + D V G V + + Sbjct: 186 IVQRRNHPMALIRPSFGNRGDSYTQFGIQIRAVRPDQTSQTNVLHYLKDGNVTFRFSWRK 245 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + + ++ ++ + G ET + D + + + L Sbjct: 246 NEYLVPVPMILKALVETNDREIFDGIVGSETSNSFLTDRLELLLRNYKHYKLVSKQETLA 305 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 + R T + ++ VG+ R +L Sbjct: 306 YLGDKFRVVFNATPDVSD---------------VDVGKEVLRRIVLVHLP--DNRDKFRL 348 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-- 482 ++ +++KL + +G D+ D ++ + G + + + +++ ++ Sbjct: 349 LLFMIRKLYALVSGDCCPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLASIRLQIQTDIN 408 Query: 483 -----DLDTLMPQDMINAKP---ISAAVKEFFGSSQL--------------SQFMDQNNP 520 + D + + I ++ F + L + ++ N Sbjct: 409 RGYPVNFDEPKYMSRVFQRINENIGKKLQYFLSTGNLVSQTGLDLQQVSGYTVVAEKINF 468 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 I+H R + G E VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 469 YRFISHFRMV---HRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCK 525 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHY------LSAIEEGNYVIAQANSNLDEEGHFVEDLV 634 + + KV + H + ++ ++ ++ + L Sbjct: 526 ISTEESDVSKVPKVLSKLGVSANHVFAAGPQMCCVQLDGKIVGW--CTHEQAKIVADTLR 583 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 + +G + +V + +P + R P Sbjct: 584 FWKVEGGHGIPLDLEVGH---------------VPPSSRGQYPGLYLFGGRARMTRPV-- 626 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 + E + I + E E Sbjct: 627 ---RYLPLDKEDIIGPFEQAYI--------------NIAVTPEEIE-------------- 655 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 SN ++ + P ++L+ P++ +N Sbjct: 656 ----SNVHSHVEFSP----------TNILSI---------------LANLTPFSDFNQSP 686 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 + ++ ++ T ++ +L T P V Sbjct: 687 RNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQ----TGQTPIVKANLYDDYGMDNFPN-- 740 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 + A+ D + D + Sbjct: 741 -----------------------GTNAVVAVISYTGYD---------------MDDAMII 762 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 + E+ + ++++ + I + F L Sbjct: 763 NKSSDERGFGYGTMYKVEVIDLADSRRKGDPITQHFGFG-------TDEWPESWKQNLDE 815 Query: 995 DRWLELGL----TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 D +G D + L + + H E + + I+ DDL L++V Sbjct: 816 DGLPAIGTLVNEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLIS--DDLGDSELQMV 873 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 + + R+ Q GDK + RHG KGV S+ P DMP+ E G D+++NP PSR Sbjct: 874 TIKYRITRQPQIGDKFSSRHGQKGVCSRKWPQIDMPFTETGIQPDVIINPHAFPSR---- 929 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 IG + ++ A GA D + + E Sbjct: 930 -----------MTIGMFVESL----------------AGKAGALHGIAQDSTPWKFNE-- 960 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 D E L G +Y G TGE+ + +G + Sbjct: 961 -----------------DDTPADFFGEQLISAGYNYHGNEPMYSGVTGEELRADIYIGVV 1003 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL +G A+ LQ+ Sbjct: 1004 YYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRNGGIRIGEMERDALIGHGTAFLLQDR 1063 Query: 1291 LTVKSDDVNGRTKM----------------------YKNIVD------------------ 1310 L SD + Sbjct: 1064 LLNCSDYTQTSICKGCGSLLNTQTSVPRIGTKAMIHCRRCSTKINDVTAGTTDDMDLWED 1123 Query: 1311 --------GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 GN +P L E+ ++GI + E Sbjct: 1124 GQGNRYTGGNDTTTVAIPFVLKYLDSELSAMGIRMRYNVE 1163 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 61/426 (14%), Positives = 129/426 (30%), Gaps = 75/426 (17%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKF-------IEQDPEGQYGLE 50 M S+ +R + P L ++ + SF + G + Sbjct: 1 MKASFKTLERENRFKNPPTDKSAFPLLEQAVAPHIGSFNALTDGLNGGLLNLAVKDIGAK 60 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLRV 98 F S P + + +++ + +L +P EC+ R +TY + + Sbjct: 61 TIFDSNDPSRLGNK-LKIRVDAVQLAKPSVAVGDKLSVNRKTLPSECRERMITYKSRFML 119 Query: 99 KLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG------------------------ 134 K+ + + +I+E G+IP+M + Sbjct: 120 KVCWSVNDGPEET----EIRE----AGQIPVMLKSNRCHLEKMSPNELVKNKEESDELGG 171 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FE 187 F++NG E+++ + + + + + Y I R D Sbjct: 172 YFIVNGIEKLVRMLIVQRRNHPMALIR-PSFGNRGDSYTQFGIQIRAVRPDQTSQTNVLH 230 Query: 188 FDPKDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + N+ R R+ +P +IL+AL T + F+ ++ N + + Sbjct: 231 YLKDGNVTFRFSWRKNEYLVPVPMILKALVETND---REIFDGIVGSETSNSFLTDRLEL 287 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 LR + G + + DV ++V E + V+ + Sbjct: 288 LLRNYKHYKLVSKQE-TLAYLGDKFR---VVFNATPDVSDVDVGKEVLRRIVLVHLPDNR 343 Query: 305 STGELICAANMELSLDLLAKLSQSGH--KRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 L+ +L + + + + +G I E + + RL Sbjct: 344 DKFRLLLFMIRKLYALVSGDCCPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLASIRLQI 403 Query: 363 LVEIYR 368 +I R Sbjct: 404 QTDINR 409 >UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia intestinalis RepID=A8B9W7_GIALA Length = 1293 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 215/1444 (14%), Positives = 438/1444 (30%), Gaps = 278/1444 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG------NS 66 K + L ++Q+DS+ F++ ++ S PIQ N Sbjct: 12 KVWKVVDSWFYCRGLAAMQIDSYNHFVKHT------MKNIMASFPPIQVTRTENFCCYNH 65 Query: 67 ELQYVSYRLGE-PVFDVQECQIRGVTYSAPLRVKLRLVI--YEREAPEGTVKDI--KEQE 121 L + +L +C+I+ +Y A ++VK+ I Y EG V+++ + + Sbjct: 66 ILSFSDPQLEPNVHIKPNDCRIQSSSYMAAIKVKISYTIQQYSFSNNEGLVQEVTYEPKL 125 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 + P+M ++ +N T +V S + + + + +I G Sbjct: 126 IDFCLFPVMVNSCLCYLN-TNKVAGSDIKAHRIINDECPYDEGGYFIIRGAEKAVIAQEG 184 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 + P L + D K+P T L + N T + + Sbjct: 185 NR------PNRLLILPGDPGSKIPYTAQLVSTNSTKNLHSKVVLK--------------- 223 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 + G+ + + ++ + D + + + A+D Sbjct: 224 ----------YWSTNKWGRTIQDINQPQITFTMQGIRDDLPLFLLILALWQDNVYAARDL 273 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 + + L + L T P + + Sbjct: 274 LS----------------------IVVPDESDTELIEHLLPSYNLFCST----PQSSKDK 307 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 + + + GE ++A++ ++ L L +G + Sbjct: 308 CIEFLAGRLVVGEQ--MDSAKAKYDRLMSHLSTRLLPHIG-----------VTPEFHLDK 354 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS- 480 I + L+ G+ DD DH G +R++ G + ++FR R + +L Sbjct: 355 AFFIGYMTNLLLQTVVGRRSPDDRDHWGGKRLQLTGSLLADKFRFEYELFLRRLARKLHD 414 Query: 481 --------------------------------------LGDLDTLMPQDMINAKPISAAV 502 L + IS + Sbjct: 415 TGSILKVKEDISMVSPNIEGSSFIPQSKYDTHGKVPGLEDPRRLLDRIKVAATSYISKNI 474 Query: 503 KEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 + SQ + + + S ++ RR S+ + R Sbjct: 475 TSALSTGTWKTNEVVGNTKSGVSQSLVRLSYTSALSQIRRSSS----SVEETSKAIGPRL 530 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN-EYGFLETPYRKVTDGVVTDEIHYLSA 608 +H T +G +CP ETPEG +GLI + S+ A + E RK+ H + Sbjct: 531 LHTTQFGYMCPAETPEGAKVGLIKNFSLMANVTLDNPKDEHDLRKLLTEYRVQASHGPIS 590 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 + + + + A + + F+ E + + V S + Sbjct: 591 VLKSFHTVTNAKKLVSDVKIFLNGSWLGFIDREYVQRLITDLKRWRFEGKINREVSISYL 650 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGT----------GMERAVAVDSGVTAVA 718 + ++ R P + T E V + + + Sbjct: 651 -----AHKQEISISSDEGRVTRPVFVVITDIHPTLKLVTNLSLAITEEDVETLATIPQME 705 Query: 719 KRGGVVQYVDASRIVIKV-NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 + ++ + + +I+ + +E +DIY+ + Q + Sbjct: 706 QWNSLLSGLGTGKCMIEFLDPNEEEMALICMDIYHFKE---------EIQKAHTIRDIIL 756 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 G+ A + L N + S+++S T++ Sbjct: 757 AHGEDNAINYIKAHN-IPLANN-------YTHLEIHPSMVLS-------AITSLIPFPDH 801 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK--VTPKGETQL 895 S + L + D SGI LV + L Sbjct: 802 NQSPRNLYQASMGKQAVGIYALNYLKRFDTSGI---NVMHYPQLPLVTTRSMPHVKFRYL 858 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 + ++ AI + +DS + + V G + T + + + +++ Sbjct: 859 PAGQNVIIAIAVYSGFNQEDSLIMSQSAVDRGFMRATYYHTYEEMISSAASSINAPDRIE 918 Query: 955 QAKKDLSEELQILEA---------GLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + + + ++ ++ R+ + + + K+ R T + Sbjct: 919 KFCRPIGPNIKGIKDPGCASYLEADGLPRVGNAVNSQRLIIGKIRPNKRSMNSRAVSTYD 978 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK---IVKVYLAVKRRIQP 1062 + L+ E+ + ++ +++G D + + KV + R Q Sbjct: 979 FQDVSLKVKMEETGRVDSVIIAPDLREQSFLSEGVDSNTTGAEGSLLAKVRVRSSRVPQL 1038 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK + RHG KG + + ED+P+ +G DI++NP +PSRM IGQ++E+ Sbjct: 1039 GDKFSSRHGQKGTVGMLLRHEDLPFTLDGITPDIIMNPHAIPSRMTIGQLMESVASKLGA 1098 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 G +++ Sbjct: 1099 LSGHEVDGTAFNAPP--------------------------------------------- 1113 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 G+ + +I L + +G TGE + +G + +L H+V DK Sbjct: 1114 ------GSTDKQIAADLHARGYQKHNYEAMMNGMTGEMMTYRIFIGPTFYQRLKHMVLDK 1167 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------ 1296 + +R+TG +T+QP G++ +GG R GEME A A+GA L++ L SD Sbjct: 1168 ISSRNTGPIVTLTRQPNEGRSNYGGMRIGEMEKDAFIAHGATAILRDRLLFSSDVSEFLV 1227 Query: 1297 ------------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 + + + +P + + +EI +G+ Sbjct: 1228 CQNCGIICWHADSRKLTTKKSPHCMICSESSTTDSFARITIPYAAKLFFQEIIGMGVFPR 1287 Query: 1339 LEDE 1342 +E E Sbjct: 1288 IEVE 1291 >UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax=Viridiplantae RepID=RPOB_OLTVI Length = 1416 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 257/752 (34%), Positives = 396/752 (52%), Gaps = 72/752 (9%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YR 74 R VP +++Q +SF +F+E GL PI + + EL + Y+ Sbjct: 5 LRQNSFLVPDFIAVQRNSFSQFLES------GLIQEISKRNPITNSTKELELCFYPQYYK 58 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 L P + ++ ++ TYS L + ++L K +K Q V +G +PLMT G Sbjct: 59 LSPPELNAKQSILKNKTYSCRLYIPVKLTN-------KRTKTLKLQWVVLGNLPLMTKRG 111 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 F+ING+ RVI++Q+ RSPGV+F +H+ K+ Y A +I YRG+WL E D K ++ Sbjct: 112 HFIINGSPRVIINQMVRSPGVYFKEV---SHADQKLTYYADLIAYRGAWLRIELDKKADI 168 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + R+ + KLP I+L+AL IL F G +F Sbjct: 169 WARMKKTPKLPMLILLQALGLNLPTILKSL-NYPKFFEN-------------LGHDGNF- 213 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + R + ++ E ++ + + ++ Sbjct: 214 ----------MKQLKKGRVSSRSSSQELSGSFNLSEDVSLR--------------LDDSS 249 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 + + + + + TLF G + ++ + L AL + ++ + Sbjct: 250 KNMGAENVQRAPLQKSTKKATLF------GDFSRSSVYCKTQEEALWALYALTHPLKNPD 303 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 T +S F + YDLS +GR++ N+ L E ++ D++ + LI+ Sbjct: 304 EVTANLGKSFLYRKFMNSRVYDLSPLGRLRLNQKLNLSVNENITTITAQDLLFITNTLIN 363 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 + G G+VDDID+L NRRIR+ GE+ +NQF +GL+R+E+ ++E+L L +IN Sbjct: 364 LNYGVGKVDDIDNLKNRRIRTAGELVQNQFGIGLLRLEKIIREKLKQQQTK-LSIGSLIN 422 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 KPI+ A++EFFGSS LSQFMDQ NPL+EITHKRR+S+LGPGG+ RE AG +R +HPTH Sbjct: 423 TKPINGALREFFGSSPLSQFMDQTNPLAEITHKRRLSSLGPGGVNRETAGMAIRGIHPTH 482 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEG 612 YGR+CPIETPEG N GL+NSL++Y++ N YGF+ETP+ KV G V + + SA +E Sbjct: 483 YGRICPIETPEGQNAGLVNSLTIYSRVNPYGFIETPFYKVVKGQVQNSTRPIFFSAYQEE 542 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 ++A + ++ + + + R E + +R+++DY+ VS Q++S+ SLIPFLE Sbjct: 543 KKLLAPGDIYANKLKYLPKSELPIRKLAEFTRTTREKIDYISVSPLQMISIATSLIPFLE 602 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 HDDANRALMG+NMQRQAVP + A+ P+VGTG+E VA DSG AK+ G V Y A +I Sbjct: 603 HDDANRALMGSNMQRQAVPLMTAEAPVVGTGLECRVASDSGHVLQAKKSGFVTYSSAEKI 662 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 I + P ++ + L+K S Q+ Sbjct: 663 TI------LSPVDSTPAVPKLSKGNNSPQHFH 688 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 165/507 (32%), Positives = 249/507 (49%), Gaps = 58/507 (11%) Query: 843 TKLGPEEITADI-PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 TK + IT ++ + + +V G V GD+L T G +L+ + L Sbjct: 942 TKTQLKPITYELQKLFRSNQDTSIMHRPVVREGEWVNRGDLLADNSTTVG-GELSLGKNL 1000 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS 961 L A + + +D+ L +S ++ +T +E+ + + + L+Q + Sbjct: 1001 LLAYMPWEGYNFEDAIL-----ISERLVSDDAYTSLHIERYEVEIRETKFGLEQITSQIP 1055 Query: 962 EELQ--ILEAGLFSRIRAVLVAGGVEAEKLDKLP------RDRWLELGLTDEEKQNQLEQ 1013 +E + L+ ++ + G + K+ +P ++ L + + + Sbjct: 1056 DEGKLSHLDHFGIAKPGTWVEEGDILIGKVAPMPQKNLSRYEKLLYDVVGKKISTTRDTS 1115 Query: 1014 LAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNK 1073 L ++ + V +Y+A KR+I GDKMAGRHGNK Sbjct: 1116 LRVPRGVSGRVIHVEILNAENLPP---EFVFEGPSRVNLYIAEKRKIHVGDKMAGRHGNK 1172 Query: 1074 GVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLK 1133 G+IS I P +DMPY +GTP+D+VLNPLGVPSRMN+GQI E LG+A + +G K Sbjct: 1173 GIISNILPRQDMPYLPDGTPLDMVLNPLGVPSRMNVGQIYECLLGLAGRYLGQKFKVRPF 1232 Query: 1134 QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEA 1193 + G + + S + + Sbjct: 1233 DE--------------IYGPQTSRSLVYSKLYEARLRTGQR------------------- 1259 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 L + + G+ RL+DGRTGE F +PVTVG YMLKL HLVD+K+HARS G YSL Sbjct: 1260 ------WLFNPASPGKTRLFDGRTGECFSQPVTVGQAYMLKLIHLVDEKIHARSIGPYSL 1313 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH 1313 VTQQPL G+++ GGQR GEMEVWALE +GAAYTLQE+LTVKSDD+ GR ++ ++I Sbjct: 1314 VTQQPLRGRSKHGGQRLGEMEVWALEGFGAAYTLQELLTVKSDDIKGREQVMESIQKNKT 1373 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELE 1340 G PESF VL++E++SL +++ + Sbjct: 1374 IS-LGTPESFKVLIRELQSLCLDVGVY 1399 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 106/300 (35%), Positives = 151/300 (50%), Gaps = 6/300 (2%) Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 + Y L K RSNQ+T I P V GE V RGD+LAD +T GEL+LG+N+ Sbjct: 942 TKTQLKPITYELQKLFRSNQDTSIMHRPVVREGEWVNRGDLLADNSTTVGGELSLGKNLL 1001 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 +A+MPW GYNFED+IL+SER+V +D +T++HI+ R+TK G E+IT+ IP+ E Sbjct: 1002 LAYMPWEGYNFEDAILISERLVSDDAYTSLHIERYEVEIRETKFGLEQITSQIPD--EGK 1059 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 LS LD GI G V GDIL+GKV P + L+ EKLL + G+K S +D+SLRVP Sbjct: 1060 LSHLDHFGIAKPGTWVEEGDILIGKVAPMPQKNLSRYEKLLYDVVGKKISTTRDTSLRVP 1119 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRAL--EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 GVSG VI V++ + + + + + + +K + G I +L Sbjct: 1120 RGVSGRVIHVEILNAENLPPEFVFEGPSRVNLYIAEKRKIHVGDKMAGRHGNKGIISNIL 1179 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + D P D L L + N + +K + + G Sbjct: 1180 PRQDMPY-LPDGTPLDMVLN-PLGVPSRMNVGQIYECLLGLAGRYLGQKFKVRPFDEIYG 1237 >UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 Tax=Fungi/Metazoa group RepID=RPA2_YEAST Length = 1203 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 185/1274 (14%), Positives = 358/1274 (28%), Gaps = 295/1274 (23%) Query: 169 KVLYNARIIPYRGS---WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFF 225 R+ YRG L + + + + LP + + +L Sbjct: 123 PSESRQRLTSYRGKLLLKLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQ 182 Query: 226 EKVIFEIRDNKLQMELVPERLRG---ETASFDIEANGKVYVEKGRRITARHIRQLEKDDV 282 K + + + + +R + + + + +G + I+ Sbjct: 183 HKEESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQ------- 235 Query: 283 KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD 342 + V + + V D E + ++ L H +F D Sbjct: 236 -IRSVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIF--DGI 292 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 G + ++ D L + Y ++ + + S D+ DL VG+ Sbjct: 293 IGNDVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLE-VGQ 351 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 +R +L + ++ +++KL + G+ D+ D ++ + G + Sbjct: 352 EVLDRIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGM 411 Query: 463 QFRVGLVRVERAVKER----------LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL- 511 + + + + + ++ D + M + I + ++ F + L Sbjct: 412 ILKEKIDEYLQNIIAQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLV 471 Query: 512 -------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + ++ N I+H R + G + VR + P +G + Sbjct: 472 SQSGLDLQQVSGYTVVAEKINFYRFISHFRMV---HRGSFFAQLKTTTVRKLLPESWGFL 528 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL-------SAIEE 611 CP+ TP+G GL+N + + + + + + + ++ Sbjct: 529 CPVHTPDGSPCGLLNHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFAAGPSLCCVQI 588 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 +I + ++ + L + +G++ D + L F Sbjct: 589 DGKIIGWVS--HEQGKIIADTLRYWKVEGKTPGLPID--LEIGYVPPSTRGQYPGLYLFG 644 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 H M R + +VG Sbjct: 645 GHSR---------MLRPVRYLPLDKEDIVG-----------------------------P 666 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 + P E +++ ++T +N + Sbjct: 667 FEQVYMNIAVTPQEIQNNVHTHVEFTPTNILS---------------------------- 698 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 + P++ +N + ++ ++ T ++ +L T Sbjct: 699 --------ILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQ----T 746 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 P V + A+ Sbjct: 747 GQTPIVKANLYDDYGMDNFPN-------------------------GFNAVVAVISYTGY 781 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGL 971 D + D + + E+ + + + + + I + Sbjct: 782 D---------------MDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFG 826 Query: 972 FSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFEK 1027 F E L+KL D +G EE + L + + H E Sbjct: 827 FGN-------DEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEP 879 Query: 1028 KLEAKRRKITQGDDLAP-GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 + I GD+ L+ V + ++R Q GDK + RHG KGV S+ P DMP Sbjct: 880 AYIEEVNLI--GDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMP 937 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 + E G DI++NP PSR IG + ++ Sbjct: 938 FSETGIQPDIIINPHAFPSR---------------MTIGMFVESL--------------- 967 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 A GA D + + E D E L Sbjct: 968 -AGKAGALHGIAQDSTPWIFNE-------------------DDTPADYFGEQLAKAGYNY 1007 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 G +Y G TGE+ + VG +Y +L H+V+DK RSTG + +T QP+ G+ + G Sbjct: 1008 HGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHG 1067 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM---------------------- 1304 G R GEME AL +G ++ LQ+ L SD Sbjct: 1068 GIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSILTTQQSVPRIGSISTVC 1127 Query: 1305 YKNI------------------------------------VDGNHQMEPGMPESFNVLLK 1328 + V GN +P L Sbjct: 1128 CRRCSMRFEDAKKLLTKSEDGEKIFIDDSQIWEDGQGNKFVGGNETTTVAIPFVLKYLDS 1187 Query: 1329 EIRSLGINIELEDE 1342 E+ ++GI + E Sbjct: 1188 ELSAMGIRLRYNVE 1201 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 52/377 (13%), Positives = 112/377 (29%), Gaps = 74/377 (19%) Query: 3 YSYTEKKRIRKDFGKRPQVLDV-PYLLSIQLDSFQKFIEQDPEGQYGL------EAAFRS 55 + E++ + K + + + SF E G L E Sbjct: 16 FRTLERESRFINPPKDKSAFPLLQEAVQPHIGSFNALTEGPDGGLLNLGVKDIGEKVIFD 75 Query: 56 VFPIQSYSG---------NSELQYVSYRLGEP------------VFDVQECQIRGVTYSA 94 P+ S + + +P E + R +Y Sbjct: 76 GKPLNSEDEISNSGYLGNKLSVSVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRG 135 Query: 95 PLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG-------------------- 134 L +KL+ + E V+D G +P+M + Sbjct: 136 KLLLKLKWSVNNGEENLFEVRDC-------GGLPVMLQSNRCHLNKMSPYELVQHKEESD 188 Query: 135 ----TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD----- 185 F++NG E++I + + + ++ Y+ I R D Sbjct: 189 EIGGYFIVNGIEKLIRMLIVQRRNHPMA-IIRPSFANRGASYSHYGIQIRSVRPDQTSQT 247 Query: 186 --FEFDPKDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 + + R R+ +P +IL+AL +T++ F+ +I + + Sbjct: 248 NVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSD---REIFDGIIGNDVKDSFLTD 304 Query: 241 LVPERLRG-ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 + LRG + ++ +V G + ++ D+++ + ++ I + K Sbjct: 305 RLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGK 364 Query: 300 DYIDESTGELICAANME 316 D + L+ Sbjct: 365 DGSQDKFRMLLFMIRKL 381 >UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata RepID=B6AI41_9CRYT Length = 1341 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 213/1443 (14%), Positives = 414/1443 (28%), Gaps = 296/1443 (20%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQI 87 + ++SF F+ GL ++ I + + +G + +E Sbjct: 51 VWPHIESFNCFL------LTGLSNIVINLPSIY-IDSDYVIDDCELNVG---YIPRE--- 97 Query: 88 RGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVS 147 +++++ + P + ++Y Sbjct: 98 ---------YLRIKVTCIKVGKPIFGSTESSNTKMY------------------------ 124 Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF--DPKDNLFVRIDRRRKLP 205 + +G + Y+A + W++FE + +P Sbjct: 125 --------------PCSARNGHLSYSAPL------WIEFECYNSSSKSSVRHNLFAGSIP 164 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDIEANGKVY 262 + A + + +L + +R + ++ + + Sbjct: 165 IMVRSLACHLYSLSPNELVANGEDPNEVGGYFIINGNERVIRYVIQQRCNYPVGLKRSRF 224 Query: 263 VEKGRRITARHI--RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 + T I R L D + V + ++ L L Sbjct: 225 TSRDIFGTEYAILLRSLRNDGTSTANYLYGTTDNQCVYRILLNRQEWLLPFW----NVLL 280 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 + + + R + L Y V L + PP+ + Sbjct: 281 AVGSIYDAKTLRNKILQYCCNTRDEY-DPLYGVINMLTIEWGLDNSSGVENSVIPPSYDG 339 Query: 381 A---ESLFENL--------------FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 A + EN F+ GR + +L E + + Sbjct: 340 AFGDIEIIENRHLHNLGKLVWEGVVFYLPPGSLYQDAGRFIIDNHILVHLPEWN--AKLE 397 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER--------AV 475 +I + KL+ ++ G+ + ID + I S G + + + + + + Sbjct: 398 CLILMFIKLLKLQYGQIREESIDSFAYQEILSSGNLYASVLKDAIFSFLQKIRMIYITEI 457 Query: 476 KERLSLGDLDT----------------------LMPQDMINAKPISAAVKEFFGSSQ--- 510 + R S + N I ++ F + Sbjct: 458 RNRNSSKSEKEASDELPLPYSSAALDLLRDDSFFKTSLIRNISMIPKRIQYFMATGNIKT 517 Query: 511 ----------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 + D+ N ++H R A+ G +VR + +G +CP Sbjct: 518 TQLDLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMKTTDVRKLMGETWGFLCP 574 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV-----------TDGVVTDEIHYLSAI 609 + TP+G GL+ LS +++ + + DG+ T I + S Sbjct: 575 VHTPDGEPCGLLLHLSQDTIPVTQFEIQSTLKNLRDYLVGQNIPCDDGLGTLSIQWGSLN 634 Query: 610 EEGNYV-------------IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 + YV + + + E L + ++ + + Sbjct: 635 LDDIYVPDLSKSVPVMLDGRVMFHIPKLKFTFWQEKLRNLK-WSKTPSILPVHTEIACIP 693 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAVDSGV 714 V + + F R ++ + P + + T E ++ Sbjct: 694 P--DCGVFSGIFMFTAPGRLVRPVLHLKSNKIDWIGPLAQPWMDIGVTEEETQKSIKLYN 751 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 + G S I N D+ E Y L N +Q Sbjct: 752 LQMKLFGLYRNDNITSDIETTDNMDKNQIEEMIKKDYTLG----CNPVMYTHQ------- 800 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + +L+ S +P+ +N + +++++ T + Sbjct: 801 -ELHPSTILSITASL---------------IPYAHHNQSPRNMYQCQMLKQTMGTPCYSY 844 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 +R + IT P V G ++ Sbjct: 845 PYRTDNRMYR----IITPQNPLVITKGY-------------------------ASYGFSE 875 Query: 895 LTPEEKLLRAIFGEKASDVKDS-SLRVPNGVSGT----VIDVQVFTRDGVEKDKRALEIE 949 + A+ D++D+ L + G V ++ + + E Sbjct: 876 YPTGTNAIVAVISHSGYDMEDAMVLNKASYERGIFHACVYKTKILFAAPNSV-IKKSDAE 934 Query: 950 EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD--EEK 1007 + D ++ L A I LV G + +++ Sbjct: 935 SYRFHNIGPDGKLVIKELGADGLPMIGQKLVKGSPMCRVEKLGSGGVISNAIVQTYHDDE 994 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 + +E++ L E G + + G + + + L + R GDK A Sbjct: 995 EAYVEKINRVGSGLSTESHSDSTLGGSGGPGGSEYSSGYGEKISLKLRIVRNPMVGDKFA 1054 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 RHG KG++S + P E+MP+ E+G DI+ NP G PSRM +G ++E G AA G Sbjct: 1055 SRHGQKGILSMLWPHENMPFGESGIVPDILFNPHGFPSRMTVGMLIECMAGKAACLHG-- 1112 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 +D + F + K M I Sbjct: 1113 ----------------------------ASALDATPFHRNITDKQTILEDKEMGIDLS-- 1142 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 + + L G L++G TG + + +G +Y +L H+V DK RS Sbjct: 1143 KQSTVDYFGKALLKTGFQYFGCEPLFNGMTGTEMPCHIFMGVIYYQRLRHMVADKAQVRS 1202 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 TG +T+QP+ G+ + GG RFGEME +L +YG + + + L SD+ Y Sbjct: 1203 TGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSIIADRLLKCSDEHKAYVCPYCG 1262 Query: 1308 IV----------------------------DGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 ++ +P F L E+ ++ I I L Sbjct: 1263 LIFSAILPRKTTNFQNRLATTLPHVAICKVCKTPCRLITLPYVFRYLCNELATMNIVIRL 1322 Query: 1340 EDE 1342 E E Sbjct: 1323 ELE 1325 >UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AT93_BABBO Length = 1283 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 189/1421 (13%), Positives = 410/1421 (28%), Gaps = 260/1421 (18%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQEC 85 + +DSF FI+ R + P+ + + L+++ +P C Sbjct: 9 GAIHAHIDSFNAFIDHYST------RMVRRIPPVYISADSDHLKHLLNSKEKP-----HC 57 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVI 145 ++ V Y + +++ + T + +G Sbjct: 58 KLTAV-YHNITNLDVQVSVLSLRIGNPTRPGSE----CLG-------------------- 92 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP 205 S F H Y + +I G + + + +P Sbjct: 93 ------SDNRMFPRHAKIAH----TTYESSLIVKFG----LKIPGTSKVLTKELTVGYIP 138 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER------LRGETASFDIEANG 259 + + N ++ + + + LR N Sbjct: 139 IMVKSKRCNLDGISPEEMVEQGEDIDEPGGYFVVRGNERIVRQLIVLRSNYPLAIKSGNN 198 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 + + Q D + V + + + + + S + + ++ Sbjct: 199 RTKHVLFTDYSIMMRSQCHDDGCSVNNVLYLTVNKRCMFRTIVKGSVQLIPFGVLLRATM 258 Query: 320 DLL--AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 L+ +L Q + + + + + + +P + +I Sbjct: 259 PLMSDEELKQKLLQDTLGDEALTVYYQRFFLDLVEREPD------ICDIDLKENRHLYRL 312 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 A S Y G +L + + + ++ + KKLI + Sbjct: 313 GSACWSQVNQYLHPGATY--EECGAYFLRHYVLLQAKTNAE--KFETLLYMFKKLIKVSR 368 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV---------------RVERAVKERLSLG 482 G+ + ++ D + + G++ + L + + + + Sbjct: 369 GEIQTENYDSFAFQELLLPGQIYSCILKESLYVALLKIRSIYHAELLELCKNISGDATRH 428 Query: 483 DLDTLMPQDMIN------------------------AKPISAAVKEFFGSSQ-------- 510 L+ D+ + A I + F + Sbjct: 429 SKRRLIDVDLQSHEQKELLEKLLEKPELFSYAVEKVASDIPKKLHSFLATGNATNMHFEL 488 Query: 511 -----LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 L+ ++ N ++H R +L G L + EVR + +G +CP+ TP+ Sbjct: 489 TQSSGLTVVAERINYHRFMSHFR---SLHRGSLFAKMRSTEVRKLLGETWGFICPVHTPD 545 Query: 566 GPNIGLINSLSVYAQTNEYGFLET--------------PYRKVTDGVVTDEIHYLSAIEE 611 G GL+ L+ YA E VTD + + + + Sbjct: 546 GAPCGLLLHLAQYAVPVTATDCEGAAEAVKSLLRTHGYSVDFTGHETVTDFVTHDAQHIK 605 Query: 612 GNYVIA----QANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 +VI ++E +++ + G+ L ++ Sbjct: 606 RIHVIVDGVPMCTLPINEAPKLYDEIKLAKRYGKFGLKEHYEIVAS-------------- 651 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYV 727 + ++ R P + + +G + + + + Sbjct: 652 --PDVKGEYTSIMILTYPGRVIRPVIC-----LTSGEIEWIGPITQLWSTIAVS------ 698 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV-ERGDVLADG 786 ++ E ++ + + ++ P + + V + D + Sbjct: 699 --EEEARISHQMVASNAEGKCKTLSIDEALMHDNSSDHAVSPVKKVIDNVPVKYDYMEVS 756 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 PS L + A P++ +N + +++++ H ++ + +L Sbjct: 757 PSAILS-------VTAALTPFSNHNQSPRNMYQCQMLKQSMGVPYHCEQFRSDVKAYRL- 808 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 + P V + + A+ Sbjct: 809 ---LFPQKPLVTTTEFRQ-------------------------MNYEDYPTGMNAVVAVI 840 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI 966 + + +I+ R ++ + + ++ Sbjct: 841 ----------AHTGFDMEDAMIINKSSLDRGAFHGCIYKSKVIDAMPANGRSRGNQHYFA 890 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ-LEQLAEQYDELKHEF 1025 L S+I A L G+ + ++ ++ + E+Y + Sbjct: 891 NTNHLGSKIIASLDKDGLPNVGARVKKGTPICRIESHEKVGGSKQISDRVEKYHDEDAIV 950 Query: 1026 EKKLEAKRRKITQGDDLAPGVLK--IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 ++ + + +K + + R GDK A RHG KG++S P E Sbjct: 951 DQVTIIGCNDASVAEMPNASNIKGTRATIKFRIVRNPIVGDKFASRHGQKGILSMAWPAE 1010 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR- 1142 +MP+ E+G DI+ NP G+PSRM IG+++E G +A G +A ++ Sbjct: 1011 NMPFLESGIIPDIIFNPHGLPSRMTIGKLIECMAGKSAAIHGAFQDATCFRKYPKQMATG 1070 Query: 1143 -EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 ++I G + R +S + + + L Sbjct: 1071 NKWIDHGGLKGWEERGFRYMSKEEELSKT-----------------EDDVIDYFGKTLLQ 1113 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 G +Y G G + + +G ++ +L H+V DK R+TG +T+QP+ G Sbjct: 1114 AGYDYYGTESMYCGSLGTEIRTHIFIGCIFYQRLRHMVSDKAQVRATGPVDAITKQPVKG 1173 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG--- 1318 + GG RFGEME +L A+GA+ LQ+ L SD + G Sbjct: 1174 RKNRGGIRFGEMERDSLIAHGASALLQDRLIHCSDAHTAYVCPNCGSIISATVTSVGATN 1233 Query: 1319 ------------------MPESFNVLLKEIRSLGINIELED 1341 +P + E+ S+ + I L Sbjct: 1234 KRSVSHCRICKVACKLVTIPYVLRYVAHELASINVGIRLHL 1274 >UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQY8_ENCCU Length = 1110 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 190/1372 (13%), Positives = 387/1372 (28%), Gaps = 316/1372 (23%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLG 76 + L+ ++S+ F++ + + I + Sbjct: 9 LIKLFFNEKGLVRQHIESYDYFVDHEIKALVRANQ-------IVDSDIDHTFYLK----- 56 Query: 77 EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTF 136 + +R+ + E M + F Sbjct: 57 --------------------YLDIRVAMPSVEEN-------------------MVNYNVF 77 Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 I + Y+A I ++D E+ + V Sbjct: 78 PIE-------------------------CRLRDITYSANI------YVDIEYVRNRQIIV 106 Query: 197 RIDRR-RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 + D K+P + + E + K E F + Sbjct: 107 KRDVCIGKMPVMLRSSRCHLRRETKGPMEGRKTKDRRIRE------SQECPLDVGGYFIV 160 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 +V + + + R I + + + + Sbjct: 161 RGIERVVLIQEQLSKNRIIIESGPKGL--FASVTSSTDEHKSKTSVTTRDDCYYLKNSMF 218 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI----SETLRVDPTNDRLSALVEIYRMMR 371 + ++ + G + + I R AL+ I ++ Sbjct: 219 SEEVPVVIMMKALGLVQDREVAECVGKEYFEIMVPSFGECMSKGIFTREQALLYISSYIK 278 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 ED + + + I ++++ Sbjct: 279 -----------------LKPEDNRIEEVLTVLSEKVLPNVQIEGCDLRKKGIYIALMVRR 321 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-------SLGDL 484 L + DD D +GN+R G++ F R +K+ + S Sbjct: 322 LAQTKLNILREDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQE 381 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEITHKRRISALGP-----G 536 + + A I++ + + +F M+++ ++ ISALG Sbjct: 382 FDALTFLNLQANMITSTLARAISTGNWNLKRFRMERSGVTHVLSRHSYISALGMMTKINS 441 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 + R R +H + +G +CP++TPEG + GL+ +L++ A+ P Sbjct: 442 HFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTN-SDTKPILDTVY 500 Query: 597 GVVTDEIHYLSAIEEGNYVI--AQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQV 650 + +I+ + E + N ++ + VE R KG F Sbjct: 501 KLGVVDINSVYTREIHQKDMFSVFLNGDIIGITNRADFLVEQFKLHRRKGLVGKFVSIYK 560 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 ++ + S + L D NR Q + + + D+ L + VA+ Sbjct: 561 VTVE-RVIHIASDNGRVCRPLIIIDKNRI-------NQTIISNQMDECLKALNISEKVAI 612 Query: 711 DSGVTAV-----------AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 +SG + G ++Y+D + + + P + G + +L Sbjct: 613 ESGKSLFDCYLKYKSFTDLLEEGFIEYLDVNEENDCLV--ALKPEDIGEETTHL------ 664 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 LG +A +P+ +N Sbjct: 665 ------------------------EISEFAILGYVA-------GLVPFPHHNQSPRNTYQ 693 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 + ++ L R + + P V L ++ + I Sbjct: 694 CAMGKQAIGHI----SLNVKKRFDSVILQLTYTHRPMVSTKILDLINYNEIPA------- 742 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 + + A+ D++D+ + V + V+V+ Sbjct: 743 ------------------GQNAMVAVMSYSGYDIEDALVLNKTSVERGLFRVEVYKTTTT 784 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 K + + ++ K+ +L+ + ++ G V K+ + Sbjct: 785 LLKKHSNGMSDVLWPNPKES------VLDEDGLGKPGKMVRDGTVYVNKMSPVDGTYKFT 838 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + + + L + + ++K L R Sbjct: 839 GKVHRGDPAYIDKILITKSQDQV--------------------------LIKTMLRQTRV 872 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 + GDK + RHG KGV+ + EDMP+++ G DI I+ H Sbjct: 873 PEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDI---------------IMNPHGFP 917 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 + +G + E++ + +G Sbjct: 918 SRMTVGKIV---------------------------------------ELISGKAGVLEG 938 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 + + F + ELL SG+ G TG + G ++ +L H+V Sbjct: 939 QILDSTAFKENSVEQTCELLIKHGFSYSGKDCFTSGTTGAPLAAYIFFGPVFYQRLKHMV 998 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DK+H R+ G +++T+QP G+++ GG + GEME L YGA+ + E L SD Sbjct: 999 ADKIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLITERLMTSSDVFE 1058 Query: 1300 GRTKM---------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G ++ MP + +L +E+ S+ I L E Sbjct: 1059 AYVCRSCGVLAFKGCCVACKGTKPVKVKMPYACKLLFQELMSMNILPRLHIE 1110 >UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae RepID=Q6E6F3_ANTLO Length = 1014 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 185/1212 (15%), Positives = 370/1212 (30%), Gaps = 244/1212 (20%) Query: 169 KVLYNARIIPYRGS-WLDFEFDPKDNLFVRID-RRRKLPATIILRALNYTTEQILDLFFE 226 R + Y G+ ++D E+ + ++ + K+P + + + Sbjct: 8 PEECRLRDLTYCGNIYVDIEYTKHRKVIIKKNVFIGKVPIMLRSMLCHLEEK-------- 59 Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 + E P + G F ++ +V + + + R I ++ K Sbjct: 60 RDDCETVRETYGHRECPLDMGG---YFIVKGVERVILIQEQLSKNRIIADIDNKGCKFTS 116 Query: 287 VPVEYIAGKVVAKDYIDESTGEL--ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 V K + + L + ++ +L L I + Sbjct: 117 VTSSTHDKKSKTSIILKKRLLYLKNNVFTDSVPAVIVLKALGMVSDCEIAEFVGQEGALL 176 Query: 345 PYISETLR---VDPTNDRLSALVEIYRMMRPG-EPPTREAAESLFENLFFSEDRYDLSAV 400 + +L + +L AL I ++ RP + A ++ + D + Sbjct: 177 EMLEPSLEHALQTGVHTQLQALDFISKLTRPRQNVSRIDEARTILYEVVLPNIPNDGIDM 236 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 R + +++ L+ +DDID LGN+R G + Sbjct: 237 RR------------------KAITVAIMIRVLLQAELNMISMDDIDFLGNKRFELAGNLL 278 Query: 461 ENQFRVGLVRVERAVKERLSLGDLDTLMPQDM-------INAKPISAAVKEFFGSSQLSQ 513 F +R +K+ + + QD+ + IS + + + Sbjct: 279 SILFEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLNLQVNLISNSFVRAISTGNWTV 338 Query: 514 F---MDQNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 M++ ++ I+ +G + R R +H + +G +CP +TPE Sbjct: 339 RRFRMERAGVTQVLSRLSYIAMIGSMAKIQSQFEKTRKISGPRSLHTSSWGMLCPADTPE 398 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE--GNYVIAQANSNL 623 G + GL+ +L++ A+ ++ ++ + + S I+ + + N + Sbjct: 399 GESCGLVKNLAILAEITTD-VPQSDVEQLLFQLGVRDFRTCSGIDFYSKHSYLIFLNGTI 457 Query: 624 DE----EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA 679 V V R +G S F + T + + G + L + R Sbjct: 458 VGICYNNNTLVRKFVEMRRRGVVSQFVSVYKNDEK-RTISIATDGGRICRPLIIVENGRQ 516 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 ++ + L + G V+++D + + Sbjct: 517 MLEHEDLELLRRRYKNPDDLF-------------------KEGKVEFLDVNEE--NNTKI 555 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 + +L + +L Sbjct: 556 ALRESNICRSTTHLE----------------------ICEYSILG--------------- 578 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 +P+ +N + ++ + + + R L + P V Sbjct: 579 CVAGLIPYPHHNQSPRNTYQCAMGKQAMG-FVALNQYR---RFDTLLNLLVYPQKPLVST 634 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 ++ + + + A+ D++D+ Sbjct: 635 KITDIVNFEKLPA-------------------------GQNGMVAVMAYAGYDIEDA--- 666 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 + + +++ E+ K+ G+ RI Sbjct: 667 ------------LIINKGALDRGFGRCEVYRSYKHSLKRY--------SNGMCDRISGSK 706 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + GV D ++ E+ + EL + K G Sbjct: 707 HSDGVRGPGERVFDGDFFVYKESPTEDADFKFS------GELYKNLSPSVVDKVIVARSG 760 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +D +VK L R+ + GDK + RHG KGVI + P D+P+ E+G DI++N Sbjct: 761 ED-----QFMVKTCLRQVRQPEVGDKFSSRHGQKGVIGLVVPETDLPFSEDGQVPDIIMN 815 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P H + +G I Sbjct: 816 P---------------HGFPSRMTVGKII------------------------------- 829 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 E++ + G VF ++ +L G+ +G TG+ Sbjct: 830 --------ELISGKAAVFTGRQSDATVFREDITEDLSHILIKHGYSYCGKDTFTNGITGD 881 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 +E V G +Y +L H+V DKMHARS G +++T+QP GK++ GG R GEME L Sbjct: 882 VYEGYVFFGPVYYQRLKHMVADKMHARSRGPRAMLTRQPTEGKSREGGLRLGEMERDCLI 941 Query: 1280 AYGAAYTLQEMLTVKSD----DVNGRTKM-----YKNIVDGNHQMEPGMPESFNVLLKEI 1330 YGA+ L E L + SD + R + + + MP + +L +E+ Sbjct: 942 GYGASAILCERLMISSDVFRAYICHRCGIIVYKNMCTLCKRGDPVPVDMPYACKLLFQEL 1001 Query: 1331 RSLGINIELEDE 1342 S+ I ++ + Sbjct: 1002 MSMNILPRIKLQ 1013 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 54/346 (15%), Positives = 111/346 (32%), Gaps = 62/346 (17%) Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN------ 133 +EC++R +TY + V + + + I ++ V++G++P+M + Sbjct: 6 VLPEECRLRDLTYCGNIYVDIEYTKHRKV--------IIKKNVFIGKVPIMLRSMLCHLE 57 Query: 134 -----------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 G F++ G ERVI+ Q S K V Sbjct: 58 EKRDDCETVRETYGHRECPLDMGGYFIVKGVERVILIQEQLSKNRIIADIDNKGCKFTSV 117 Query: 171 LYNARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPATIILRALNY-TTEQILDLFFEKV 228 + + S K L+++ + +PA I+L+AL + +I + ++ Sbjct: 118 TSSTHDKKSKTS----IILKKRLLYLKNNVFTDSVPAVIVLKALGMVSDCEIAEFVGQEG 173 Query: 229 IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 + + + + D ++ K R R E Sbjct: 174 ALLEMLEPSLEHALQTGVHTQLQALD-------FISKLTRPRQNVSRIDE---------- 216 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLL--AKLSQSGHKRIETLFTNDLDHGPY 346 I +VV + ++ A + + + +L A+L+ I+ L + Sbjct: 217 ARTILYEVVLPNIPNDGIDMRRKAITVAIMIRVLLQAELNMISMDDIDFLGNKRFELAGN 276 Query: 347 ISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE 392 + L D S L + + T++ F NL + Sbjct: 277 LLSILFEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLNLQVNL 322 >UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium RepID=Q5CPZ8_CRYPV Length = 1287 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 186/1310 (14%), Positives = 371/1310 (28%), Gaps = 281/1310 (21%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF-----------D 189 R+I S + S + F + + + + P D + Sbjct: 147 ANRMIRSDVDPSFFIEFLDARVGMPKLEENMITVDLTPMMCRMRDITYAAPIFVDVDYVR 206 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 + + ++P + + + ++ + E Sbjct: 207 GNTVVRKKNVEIGRIPVMLRSKVCILHGKTAAEMV----------------KLNECPHDP 250 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 F ++ K + + + R I +L+ V + ++ + G+L Sbjct: 251 GGYFVVKGTEKAILMQEQLSKNRIIVELDNKHN--YCATVTSTTAESKSRTLVVFKNGKL 308 Query: 310 ICAANMELS-LDLLAKLSQSGHK---RIETLFTNDLDHGPYISETLRV---DPTNDRLSA 362 N + L L G + I + N+ H I +L+ + + A Sbjct: 309 YLRHNSFSDEIPLCIVLKAMGIETEQEIFFMIGNEPHHQEGIINSLQEVHQEGIFTQRQA 368 Query: 363 LVEIYRMMRPGEPPTREAAESLFE-NLFFSEDRYDLSAVGRMK--------------FNR 407 L+ + + + T ++ + N S + + G K NR Sbjct: 369 LLFMSKKAKSKFKSTFGSSRGFDKSNAEESAENSGFTEFGGSKSSLCGTSIDDVLETLNR 428 Query: 408 SLLREEIE--GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 LL + + K+++D +DD D+ GN+RI G++ F Sbjct: 429 VLLSHIGTIYTDLHPKALFLCLMAKRVLDASEDNSLLDDKDYYGNKRIELAGQLISILFE 488 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQDMINAK--------------------PISAAVKEF 505 R K+++ + +D A I+ ++ Sbjct: 489 DLFKRFSVLTKKQIDQTLIRYFQTRDASKAGTGRDDSNSTYPDCFRNLPTDIITRGMQTA 548 Query: 506 FGSSQLSQF---MDQNNPLSEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGR 557 + S M+++ +T I++LG + R R + P+ +G Sbjct: 549 LSTGNWSIKRFRMERSGMTQVLTRFSYIASLGIMTRVDSQFEKARKVSGPRALQPSQWGI 608 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY--- 614 +CP +TPEG + GL+ +L++ + + +I S ++ Sbjct: 609 LCPCDTPEGESCGLVKNLALTTHITTD-HCPQYLTSLLFTLGVQDISSCSYLDFNTKQSE 667 Query: 615 ------------------------VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 + + L R KG F Sbjct: 668 KLSNEDLKNESSGKNNVKKHYYVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVSIFC 727 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +++ S+ Q+ + G L L D + Q + G+ + V Sbjct: 728 NHIH-SSVQIATDGGRLCRPLIIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDV 786 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 + + L +N+ T + P Sbjct: 787 NEENNLL---------------------------------IALRDENLTNETTHLEIDPL 813 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 LG + +P+ +N + ++ + Sbjct: 814 SILG-------------------------VVSGLIPYPNHNQSPRNTYQCAMGKQVMG-S 847 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + + R + + P + ++ + Sbjct: 848 VGFNQF---LRCDSVLYLLVYPQKPLCKTRTIEMINFEQLPA------------------ 886 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS---GTVIDVQVFTRDGVEKDKRALE 947 + A+ D++D+ + V ++ T + + E Sbjct: 887 -------GQNSSVAVMSFAGYDIEDAIVMNKASVDRGFARCFVMKRQTIELQKLPNGLSE 939 Query: 948 IEEMQLKQA------KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 + ++ + IL+ + + + K+ + + Sbjct: 940 RVVRPISVGSGNTGNRRFSFKNDSILDNDGVCNVGVQVSEDDIIVNKMSPINTREY---- 995 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 + + + D +I KV RR + Sbjct: 996 --VGDPSQFDLSEYKPSPVKYKGPTSSYIDRVILTENAD-----GNQIYKVITRQTRRPE 1048 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK + RHG KGV+ I ED+P+ E G D++ MN H + Sbjct: 1049 LGDKFSSRHGQKGVVGLIISQEDLPFSETGWCPDLI---------MN------PHGFPSR 1093 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G + E++ ++ G Sbjct: 1094 MTVGKLL---------------------------------------ELISSKASVLDGNY 1114 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 F G E + L SG+ L G TGE E + VG +Y KL H+V D Sbjct: 1115 RYGTAFGGTPLEESAKCLVEHGFHYSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLD 1174 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----D 1297 KMHAR G ++T+QP G+++ GG R GEME L AYGA+ L E L + SD + Sbjct: 1175 KMHARGRGPRQILTRQPTEGRSKDGGLRLGEMERDCLVAYGASNLLIERLMLNSDVFETN 1234 Query: 1298 VNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 V + +P + +L +E++++ + + Sbjct: 1235 VCNQCGLFGYNNYCHYCKSSQDVSIIRLPYACKLLFQELQAMNVCPRIRT 1284 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 148/1104 (13%), Positives = 322/1104 (29%), Gaps = 210/1104 (19%) Query: 5 YTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLE--AAFRSVFPIQSY 62 ++ + P L L+ +DS+ F+ + + RS Sbjct: 101 LKPVNTMKDKWRLLPYFLKTEGLVKHHIDSYNYFVTTEIQSIVRANANRMIRS-----DV 155 Query: 63 SGNSELQYVSYRLGEPVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 + ++++ R+G P C++R +TY+AP+ V + V Sbjct: 156 DPSFFIEFLDARVGMPKLEENMITVDLTPMMCRMRDITYAAPIFVDVDYV--------RG 207 Query: 114 VKDIKEQEVYMGEIPLMTDNG------------------------TFVINGTERVIVSQL 149 ++++ V +G IP+M + FV+ GTE+ I+ Q Sbjct: 208 NTVVRKKNVEIGRIPVMLRSKVCILHGKTAAEMVKLNECPHDPGGYFVVKGTEKAILMQE 267 Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATII 209 S K + V S F ++P I+ Sbjct: 268 QLSKNRIIVELDNKHNYCATVTSTT---AESKSRTLVVFKNGKLYLRHNSFSDEIPLCIV 324 Query: 210 LRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 L+A+ T ++I + + + E+ E + + + + K Sbjct: 325 LKAMGIETEQEIFFMIGNEPHHQEGIINSLQEVHQEGIFTQRQALLFMSKKAKSKFKSTF 384 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 ++R + ++ E+ K + D+L L++ Sbjct: 385 GSSRGFDKSNAEESAENSGFTEFGGSK---------------SSLCGTSIDDVLETLNRV 429 Query: 329 GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENL 388 I T++T+ ++ + ++L++ + Sbjct: 430 LLSHIGTIYTDLHPKALFLCLMAKRVLDASEDNSLLD--------------------DKD 469 Query: 389 FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 ++ R +L+ + L + + +L+K I + + R+ D Sbjct: 470 YYGNKRIELA----GQLISILFEDLFKRFSVLTKKQIDQTLIRYFQTRDASKAGTGRDD- 524 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 + D +P D+ I+ ++ + Sbjct: 525 ----------------------------SNSTYPDCFRNLPTDI-----ITRGMQTALST 551 Query: 509 SQLSQF---MDQNNPLSEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCP 560 S M+++ +T I++LG + R R + P+ +G +CP Sbjct: 552 GNWSIKRFRMERSGMTQVLTRFSYIASLGIMTRVDSQFEKARKVSGPRALQPSQWGILCP 611 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY------ 614 +TPEG + GL+ +L++ + + +I S ++ Sbjct: 612 CDTPEGESCGLVKNLALTTHITTD-HCPQYLTSLLFTLGVQDISSCSYLDFNTKQSEKLS 670 Query: 615 ---------------------VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 + + L R KG F +++ Sbjct: 671 NEDLKNESSGKNNVKKHYYVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVSIFCNHI 730 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 S+ Q+ + G L L D + Q + G+ + V+ Sbjct: 731 H-SSVQIATDGGRLCRPLIIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDVNEE 789 Query: 714 VT-----------------------AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 + G++ Y + ++ + M G Sbjct: 790 NNLLIALRDENLTNETTHLEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGSVG 849 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 ++ R + + P +P+ + + + +L GQN VA M + GY Sbjct: 850 --FNQFLRCDSVLYLLVYPQ----KPLCKTRTI---EMINFEQLPAGQNSSVAVMSFAGY 900 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK------ 864 + ED+I++++ V ++ + G E +VG Sbjct: 901 DIEDAIVMNKASVDRGFARCFVMKRQTIELQKLPNGLSERVVRPISVGSGNTGNRRFSFK 960 Query: 865 ----LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 LD G+ +G +V+ DI+V K++P + + S+ K S ++ Sbjct: 961 NDSILDNDGVCNVGVQVSEDDIIVNKMSPINTREYVGDPSQF------DLSEYKPSPVKY 1014 Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 S + V + + + + + + + K S Q GL + Sbjct: 1015 KGPTSSYIDRVILTENADGNQIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPF 1074 Query: 981 AGGVEAEKLDKLPRDRWLELGLTD 1004 + L P + + Sbjct: 1075 SETGWCPDLIMNPHGFPSRMTVGK 1098 >UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RPOB_HELSJ Length = 1247 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 281/1234 (22%), Positives = 486/1234 (39%), Gaps = 113/1234 (9%) Query: 166 SSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFF 225 + I +D F K F +I + + + Sbjct: 48 KLAFKEFEHFKIKNNNFIIDIVFQEKFLFFKQIRQAYLKKVETFGYNIFIPIIITQKILN 107 Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 +K + K + L SF I+ + + ++ L Sbjct: 108 KKNNLNLTFFKWLDLGILPSL-SPKTSFYIDGISRAVSTQKKKSPGLMFDFDLTKKSSLE 166 Query: 286 EV----PVEYIAGKVVAKDYIDESTGELICAANME-LSLDLLAKLSQSGHKRIETLFTND 340 + ++ IA + + + + L G + Sbjct: 167 KREGEAFLKIIAPRGSWFKISYSEDHIIFIEIRNIAYKIPIFTFLCALGFSLESIFQFFN 226 Query: 341 LDHGPYISETLRVDPTNDRLSALVEI---YRMMRPGEPPTREAAES------LFENLFFS 391 + + + D TN + A +I Y + P T++ E F + ++ Sbjct: 227 YNINNFKLIPNKYDNTNALIKARNDIFILYSDLLPLLNKTKKNFEIKYIINHYFFSYIWN 286 Query: 392 EDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI-DIRNGKGEVDDIDHLGN 450 + R+ + S L + D I + K I + N + ++ D+L N Sbjct: 287 SNTRYCGEATRLHLYNKVGSPLSLNSLFLEEIDFIYITKIFIYRLINNNFKDENNDNLKN 346 Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK-------------- 496 R R+ G+ Q R GL E + ++L +++ I Sbjct: 347 MRFRNGGDYIYLQTRQGLFDFESFL--NINLHNIENNSFFCNITTNKKKEDIYSIKKKKN 404 Query: 497 --------------PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 + + K FF S LSQF + NPLS ITH RR ++LGPG L + Sbjct: 405 IKNFNLSKISFLKHILLKSWKSFFLSGTLSQFAENLNPLSYITHARRFTSLGPGSLKKAE 464 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD- 601 A EVR ++P++ GRVCPIETPEG N GL++S S+Y+ G L P+ + + Sbjct: 465 ASIEVRSINPSYNGRVCPIETPEGFNAGLVHSFSLYSFKGVNGELLLPFYFIYKNIKQSY 524 Query: 602 --EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 + + EE N I + ++ F+ ++ R+ ++ + +S Sbjct: 525 YLPPIFFNIEEESNQSIITGDLIHEKWNDFLNKKLSLRNNFHLDKNDISKISFQSLSPYH 584 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 ++S+ SLIPFLEH+DANRALMG+NMQRQ VP L A +V TG++ D +++ Sbjct: 585 MISLATSLIPFLEHNDANRALMGSNMQRQTVPVLGAHNFIVRTGLDTKFFSDISSIPISQ 644 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 G + + D + ++ + ++N N+ ++ Sbjct: 645 INGF-NFESNNNYCYFYKIDNL----ITLNNISYNYIKKTNHNSLYINESIKKKNPWHQQ 699 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 GD L + + G+LALG N+ +A++PW+GYN+ED+++++ER V + T++HI L Sbjct: 700 GDFLINNSVIENGKLALGPNLLLAYLPWHGYNYEDAVIINERCVSQKILTSLHIITLTNS 759 Query: 840 SR---DTKLGPEEITADIPNVGE-------AALSKLDESGIVYIGAEVTGGDILVGKVTP 889 +E ++P E L Sbjct: 760 LELAYREINKKKEFFYEVPVKLEILFSFFAPFYYNLKYYKNQEFSQFEKKNPSYYTNNIN 819 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE 949 G K IF + S ++ + F K+ + Sbjct: 820 IGTF-----LKKGDCIFSKCRIRFSFSRELRLQYKELFILLREAFPTFEDFKNFANIFAY 874 Query: 950 EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN 1009 + ++ + ++ L+ F + + + + L + ++ Sbjct: 875 DKYKQKLDRKKQKKNTRLKTDNFIFNKNSTLFKKHKLKALINYYNIEDSTIYAQKNQEGL 934 Query: 1010 QLEQLAEQYDELKHEF---EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 + + ++ + + ++ + + K + + + R IQ GDK Sbjct: 935 IISKHLKKVPMTYTSITPFDLEEFLSTKESKKKEYYNLFFTKSINIEILQLRDIQLGDKC 994 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKG+ISKI PI +MP +GTP+DI+LNPLG+PSRMN+GQI E+ LG+A + + Sbjct: 995 AGRHGNKGIISKICPINEMPLLPDGTPIDIILNPLGIPSRMNVGQIFESLLGLAGFYLNE 1054 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + + G + + LS ++ Sbjct: 1055 TYTINIFDE--------------QFGLEASRSFVLSKLYKASILSNKP------------ 1088 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 L +G+ + DG TG+ F++P+T+GY +LKL H+V DK+H R Sbjct: 1089 -------------WLFLKKNAGKTNIIDGLTGKYFQQPITIGYSSILKLIHMVTDKLHGR 1135 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 S G YS +T QP GK+ GGQR GEME+WAL+ YGA++ LQE+ T+KSD V R + ++ Sbjct: 1136 SIGGYSTLTLQPTKGKSLLGGQRVGEMELWALQGYGASWALQELYTLKSDLVEAR-QHFQ 1194 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 N ++ + E + + ++ L E+ SL I+ + Sbjct: 1195 NYINSFNI-ESNIYDRNDISLTELESLIISDTFK 1227 >UniRef50_A8P4S3 DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide, putative n=3 Tax=Fungi/Metazoa group RepID=A8P4S3_BRUMA Length = 1104 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 183/1258 (14%), Positives = 371/1258 (29%), Gaps = 247/1258 (19%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F ++ K + + + + +LD + Sbjct: 26 RGLVKQHIASYDYFVSTEIKKILRANDKITSDANPSFYLKYLDIHVGMPSSEEGFNQIND 85 Query: 203 KL-PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET----------- 250 K+ P LR + Y+ +D+ + + + N L + +P LR Sbjct: 86 KISPHECRLRDMTYSAPISVDIEYTRGSQRVLRNGLIIGKMPVMLRSSKCVLKNMNESEL 145 Query: 251 -----------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 F I + KV + + + R + +L + + Sbjct: 146 ARVQECPYDPGGYFIIRGSEKVVLIQEQLSKNRIMIG-RNSKKELQCEILSSTQERKSKT 204 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRV 353 + + + + + G + + + ++ E Sbjct: 205 YIASKKQRYYVRHNQLSDDVPIAIIFKAMGFESDHDIVSAVGLEEKFVAAMAPSIEECAS 264 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 + AL I ++ + + S + A+ + Sbjct: 265 HQIVTQEGALQYIASKVKIRKFGPATSGTSTLPR--------EHEAIDFLSNLMIAHVPC 316 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 +G+ + + ++++L+ G E DD D GN+R+ G + F R Sbjct: 317 PDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFYGNKRLELAGSLLALLFEDVFKRFNS 376 Query: 474 AVKE----RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEITH 526 +K L L + I+ A+ + + + M++ ++ Sbjct: 377 ELKRIADNSLGKTLAAPLDIVKHVRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSR 436 Query: 527 KRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 IS LG + R R + P+ +G +CP +TPEG + GL+ +L++ + Sbjct: 437 LSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALLSHI 496 Query: 582 NEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNL----DEEGHFVEDLVT 635 E P ++ +++ + SAI Y I N + + V + Sbjct: 497 TTD-SDEKPVIRLLYNAGVEDVKSLHFSAIHNPAYHIVFLNGVIVGLTIDPQRIVSTIRA 555 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 R G + F + S + S G L + + + R Sbjct: 556 VRRHGLLNEFVSVSTNAAQRSV-YIASDGGRLCRPYIIVKNSIPQVTQEHIEELKKGYRI 614 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 + V G+ + V+ + I V E+++ P Sbjct: 615 FEDFVDDGLIEYLDVNEM----------------NDASIAVYENQIKPTTTH-------- 650 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 L P T LG + +P+ +N Sbjct: 651 ---------------------------LEIEPFTLLG-------VCAGLIPYPHHNQSPR 676 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 + ++ T R L + P V + + + Sbjct: 677 NTYQCAMGKQAMGTI----GYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCNFEKLPA--- 729 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS---GTVIDVQ 932 + + A+ D++D+ + + G + + Sbjct: 730 ----------------------GQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYK 767 Query: 933 VFTRDGVEKDKRA-LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 + + + ++ A + + Q+L+ + A + + V K Sbjct: 768 HAKATARKYPNQTFDRLMGPTIEAATRKPIYKHQVLDQEGIVYVGACIRSKQVMINKHMP 827 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 + +++ + N +Y ++ + + + ++ +VK Sbjct: 828 V-VSMEAGATVSNNDGTNIGGSHEVEYKDVSVVYRNPVPSYAERVL--LTYNEDDAHLVK 884 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 EDMP+++ G D+++NP Sbjct: 885 -------------------------------EDMPFNDLGMCPDMIMNP----------- 902 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 H + +G + E++ Sbjct: 903 ----HGYPSRMTVGKLM---------------------------------------ELLS 919 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + G F G + + E L G+ L G TG+Q + G +Y Sbjct: 920 GKNAVLSGKFHYGTAFGGDQVDIVCEELAARGFNYLGKDMLTSGITGQQLSAYIYFGPIY 979 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 KL H+V DKMHAR+ G +++T+QP G+A+ GG R GEME L AYGA+ L E L Sbjct: 980 YQKLKHMVLDKMHARARGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGASMLLMERL 1039 Query: 1292 TVKSD----DVNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 V SD DV + + +P + +L +E++S+ I ++ Sbjct: 1040 MVSSDEFKVDVCSQCGLIGYKSWCQMCRSSRTMATIKIPYACKLLFQELQSMNIVPKI 1097 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 95/268 (35%), Gaps = 56/268 (20%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M E + I+ + P L V L+ + S+ F+ + ++ R+ I Sbjct: 2 MEKITGEVQTIKDKWTLVPAFLQVRGLVKQHIASYDYFVSTE------IKKILRANDKIT 55 Query: 61 -SYSGNSELQYVSYRLGEP-----------VFDVQECQIRGVTYSAPLRVKLRLVIYERE 108 + + L+Y+ +G P EC++R +TYSAP+ V + Sbjct: 56 SDANPSFYLKYLDIHVGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYT----- 110 Query: 109 APEGTVKDIKEQEVYMGEIPLMTDNG------------------------TFVINGTERV 144 + + + +G++P+M + F+I G+E+V Sbjct: 111 ---RGSQRVLRNGLIIGKMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKV 167 Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRK 203 ++ Q S K ++L + + + + K +VR ++ Sbjct: 168 VLIQEQLSKNRIMIGRNSKKELQCEILSSTQERKSK----TYIASKKQRYYVRHNQLSDD 223 Query: 204 LPATIILRALNY-TTEQILDLFFEKVIF 230 +P II +A+ + + I+ + F Sbjct: 224 VPIAIIFKAMGFESDHDIVSAVGLEEKF 251 >UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y994_COPPD Length = 1293 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 288/847 (34%), Positives = 423/847 (49%), Gaps = 46/847 (5%) Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY-IAG 294 + ++V E ++ +G V V ++ R + K V + +Y I Sbjct: 338 TVWDQIVAALRETELLEDVLDKDGSVVVRANSPMSTRDVETFFKSHVIPMVRSGKYDIKV 397 Query: 295 KVVAKDYIDESTGELICAA----NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 KV + + G +I + L +++ T + + Sbjct: 398 KVPVRGQMKAYEGWVIADDVEVDGESVEGRALDPELAKSLRKVSDFVTLQVPIKRFF--- 454 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + SA VE+ + R GE + AE F L F R + VG Sbjct: 455 --------QGSAFVELEKR-RTGETLSEREAERRFRQLLFDPKRNQIGRVGAYHIEHRYG 505 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + + L+ + + ++ L+ G DDIDHL NRR+R++GE+ F R Sbjct: 506 IKVEDS---LTDEMLAELGGILLAYCIGSTMPDDIDHLSNRRVRAIGELYYEVFANAFER 562 Query: 471 VERAVKERL-SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 + + ++ + + L ++ ++ V F S++ Q ++ NPL+EITHKRR Sbjct: 563 LVKTARDEMINQQKEPELKLHRVLAQNILTQYVWRFVNPSEVHQLLEYTNPLTEITHKRR 622 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 ++A+G GGL+RE A EVRDVH THYGR+CPIETPEG NIGLI SL+ YA+ NE+GFL T Sbjct: 623 VTAMGRGGLSREHASIEVRDVHHTHYGRLCPIETPEGQNIGLILSLATYAKLNEHGFLIT 682 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ 649 PYR+V +G VTDEI ++ A+EE I A++ L+ V+ V R + + +DQ Sbjct: 683 PYRRVVNGEVTDEIVWMDALEEEKEYIVPADTPLNGRKINVDR-VLARHRSQWVAVDKDQ 741 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA 709 + MDVS Q S+ ASL+PFLE DDA RALMG+NMQRQAVP + A+ P+V TGME+ V Sbjct: 742 ITLMDVSVTQPFSISASLVPFLESDDAIRALMGSNMQRQAVPLINAESPIVATGMEKHVV 801 Query: 710 VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 A + G V YVD ++ IK + Y L + R+NQ+T ++ P Sbjct: 802 ESLDYVIKANQDGTVSYVDGKQVKIKAED-------GYEKTYQLKVFDRTNQDTVVHFRP 854 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 V G+ V++GDVLA+ ++D GELALG+N+ VAFMPW GYN+ED+IL+S+R+V++D FT Sbjct: 855 KVKQGQKVKKGDVLAEAITSDNGELALGRNVLVAFMPWEGYNYEDAILISKRLVKDDVFT 914 Query: 830 TIHIQELACVSRDTKLG-PEEITADIPN-VGEAALSKLD-ESGIVYIGAEVTGGDILVGK 886 ++HI+E + G EEIT D+P+ V E LD E+GIV +G EV GDILVGK Sbjct: 915 SVHIREYMVEVAELSRGRSEEITYDLPDSVSEQEKRYLDPETGIVMVGTEVKPGDILVGK 974 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL 946 VTPK E + E KLL AIFGEK VKD+SLRVP G V+D Q+ + + Sbjct: 975 VTPKEEEDKSIETKLLSAIFGEKLDKVKDTSLRVPPAEGGIVVDTQILRNS----ETGKI 1030 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 + ++ + Q +K + G + VL + D P D L L Sbjct: 1031 KAVKVFVAQKRKIQPGDKMSGRHGNKGVVSRVLPEEDMPF-LPDGRPVDIVLN-PLGVPS 1088 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKR-----RKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 + N + L K+E + + G+ + KV L R Sbjct: 1089 RMNIGQLLELHLGLAAKVLGFKVEVPIFSNFGVEGVKELLREAGLPENGKVVLRDGRT-- 1146 Query: 1062 PGDKMAG 1068 G++ Sbjct: 1147 -GEEFLS 1152 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 166/465 (35%), Positives = 231/465 (49%), Gaps = 76/465 (16%) Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN----------GVSGTVID 930 D+L + +L +L A + + +D+ L + +++ Sbjct: 866 DVL-AEAITSDNGELALGRNVLVAFMPWEGYNYEDAILISKRLVKDDVFTSVHIREYMVE 924 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 V +R ++ ++ + +Q K+ L E I+ G + +LV E+ D Sbjct: 925 VAELSR--GRSEEITYDLPDSVSEQEKRYLDPETGIVMVGTEVKPGDILVGKVTPKEEED 982 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 K + L ++ + + L E + ++ + G +K V Sbjct: 983 KSIETKLLSAIFGEKLDKVKDTSLRVPPAEGGIVVDTQILR---------NSETGKIKAV 1033 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 KV++A KR+IQPGDKM+GRHGNKGV+S++ P EDMP+ +G PVDIVLNPLGVPSRMN Sbjct: 1034 KVFVAQKRKIQPGDKMSGRHGNKGVVSRVLPEEDMPFLPDGRPVDIVLNPLGVPSRMN-- 1091 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 IG + L +V Sbjct: 1092 -------------IGQLLELHLGLAAKVL------------------------------- 1107 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 G + P+F +KELL+ LP +G++ L DGRTGE+F +TVGYM Sbjct: 1108 --------GFKVEVPIFSNFGVEGVKELLREAGLPENGKVVLRDGRTGEEFLSDITVGYM 1159 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 YM+KL H+V+DK HARSTG Y+LVTQQPLGG+A FGGQR GEMEVWALEAYGA+Y LQEM Sbjct: 1160 YMMKLIHMVEDKWHARSTGDYALVTQQPLGGRAHFGGQRLGEMEVWALEAYGASYVLQEM 1219 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 LTVKSDDV GR K Y + P +PESF VL E+++LG Sbjct: 1220 LTVKSDDVEGRKKAYIALTRNQPLEPPQLPESFKVLELELKALGF 1264 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 88/428 (20%), Positives = 169/428 (39%), Gaps = 42/428 (9%) Query: 6 TEKKRIRKDFGKRPQV----LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 T +K+I + GK + + P L + +S+ F+ + GL F + FPI+ Sbjct: 2 TARKKIWEVSGKVSKPTLSEVPYPDFLEAKKNSWNWFVTE------GLRELFNTYFPIED 55 Query: 62 YSGNSELQYVSYRL--------GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 G + + Y G P+ ++ TY+ L VK+R+ E Sbjct: 56 AKGRWRIDILDYYFENDVADETGNPINTPEDAIREHATYAKRLIVKVRVHNSE------- 108 Query: 114 VKDIKEQEVYMGE-IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 +I E+E +G+ IP MTD+G F++NG+ RV ++QL RSPG++ ++D L Sbjct: 109 TGEIVEKEHVLGKRIPWMTDSGDFIVNGSRRVTLNQLVRSPGIYLEAD--------GSLR 160 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTEQILDLFFEKVIFE 231 +IP RG+W+D E+D K+ L + +DRR +KL LRAL Y ++ + + + Sbjct: 161 RISLIPQRGTWIDIEYDGKNPLSIVLDRRSKKLNLATYLRALGYMSDDEIRTRLKDSALK 220 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 +E + + N Y R + + + + L + V+ Sbjct: 221 ------WIEFFLNDAGFDNKKLFVSQNLVSYFNYLRSYYSSTAQTVSEFRNVLENLDVDD 274 Query: 292 IAGKVVAKDYIDESTGELICA-ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 + + + ++ E+ + A+ L++L + ++ L +D I+ Sbjct: 275 QLLERLEEYNVESVLDEIAESYASQYSGLEILNIFKTIVDENLKLLIDKTIDGDTSINIF 334 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + ++AL E + + + + + S V M + Sbjct: 335 TVSTVWDQIVAALRETELLEDVLDKDGSVVVRANSPMSTRDVETFFKSHVIPMVRSGKYD 394 Query: 411 REEIEGSG 418 + Sbjct: 395 IKVKVPVR 402 >UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L740_KORCO Length = 1121 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 209/1191 (17%), Positives = 370/1191 (31%), Gaps = 219/1191 (18%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET-------ASFDIE 256 + I + A + I L +RL + F I Sbjct: 95 IELEIKVYAGGMELKTERVRIGHLPIMVKSKGCYLYGLDEKRLISKGEDPRDPGGYFIIN 154 Query: 257 ANGKVYVEKGRRITARHI------RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + +V V + + I V I + ++ + Y+ + T + Sbjct: 155 GSERVLVMRDDIAPNKVIVEQTVAENKPYSHVAQIVSARAGLRTRLYLEYYMRDGT--IK 212 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + + + L G +R E + I + + A E +++ Sbjct: 213 ASTGALRGIPVAMLLKALGLERDEDIVDAISSVDDEIRSEFLYSLDDVQRRAEEEGAQII 272 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 E + RY A ++ N E I+ + +++ Sbjct: 273 TREEALDYIGRRLVQAVPRADRIRY---AKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIE 329 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE----RLSLGDLDT 486 KL+ + GK E DD DH N+R+R G + + FR ++ R +KE +LS G D Sbjct: 330 KLLKVVRGKLEPDDKDHFSNKRLRLSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYDL 389 Query: 487 LMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPGGLT 539 + + + + K ++ + + SQ +++ N ++ + H RR+++ P GL Sbjct: 390 DIRRIIQSQKLVTQRIIRAVATGAWPGGDLGVSQNLERTNYIATLHHLRRVNSPLPAGL- 448 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 EVR H T GR+CP+ETPEG N+GL+ SL+++ +G P ++ Sbjct: 449 ---PLHEVRQTHGTSIGRLCPLETPEGTNVGLVRSLAIFCDVT-FGTDPEPIIELVLDWG 504 Query: 600 TDEIHYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 E G+ N L D+ V L R +V+ Sbjct: 505 AKPAKEAKPREVGSLTPVYVNGRLVAFTDKPEELVSFLREKR------AELNPEVN---- 554 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 F+ + + + A+ R P + K + V Sbjct: 555 --------------FIYNREEGAVFINADAGRMRRPLIPVSKLKEAMELLPKVDSGELSF 600 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 + GVV+ +DA + T + + Sbjct: 601 TDLVKMGVVELLDADEEEY-----AVVAQSIEEITDKHTHFDFAPYAMFGVAASQ----- 650 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 +P+ +N ++ +V++ + Sbjct: 651 -----------------------------IPYAEHNNIPRDIIGSNMVRQGLGEYLA--- 678 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 R P V GAE+ G Sbjct: 679 -NWRLRFDSRAFLMFYPQRPIVETR-------------GAEI------------TGYNYR 712 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ--- 952 + L+ A+ ++ D+ + + F E + A+ + Sbjct: 713 PSGQNLVVALLPMDGYNMDDALVMSKGAIDRGAARAVFFRTYETEARRHAIIEGDKFENP 772 Query: 953 ---LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN 1009 K + K + Q L + G V K L +G + Sbjct: 773 VALKKVSGKKEEQYYQKLGEDGIVDPETYVEGGDVLIGKTSPPRFSPELTVGSGYPQYTF 832 Query: 1010 --QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 + ++ + E + L K G K+V+V + R + GDK A Sbjct: 833 ERRDTSISMRAWERGVVTDVLLATK-----------TGGEKLVRVNVRETRPPELGDKFA 881 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 RHG KGV+ I EDMP+ G DIVL+P +P + IG Sbjct: 882 TRHGQKGVLGMIYRHEDMPFTAQGIIPDIVLDPHTIP---------------SRMTIGQL 926 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 E++ +G + F Sbjct: 927 Y---------------------------------------EIIAGKVGALEGRFVDGTPF 947 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 ++ E L SG+ +YDGRTG + PV +G Y +L H+V DK+HAR+ Sbjct: 948 MSEPVEDLMEALVKLGFEYSGEEIMYDGRTGRMIKAPVFIGISYYQRLKHMVRDKIHARA 1007 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK---- 1303 G L+T+QP+ G+A+ GG R GEME L ++GAA +++ +SD Sbjct: 1008 RGQMQLLTRQPVEGRARGGGLRLGEMEGEVLISHGAASVIRDRYIDQSDKTIIYVCKECG 1067 Query: 1304 ------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + ++E+ S +++ L E Sbjct: 1068 TIAFFNQKTNEFFCPRCQSSVEVKPLITSYASKLFIEELMSGHVDVRLSVE 1118 Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 69/421 (16%), Positives = 139/421 (33%), Gaps = 73/421 (17%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 K+ + L +Q++SF +F+E+ G++ + I+ N Sbjct: 3 SKRSEVDFYPIVKAYFRERNLADVQIESFNRFLER------GIQEVVDAFKEIE-LVENY 55 Query: 67 ELQYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 +L +G P D E ++R Y AP+ +++++ + Sbjct: 56 KLILSRVYVGRPEIDEYDGSSLPAMPNEIRLRNADYIAPIELEIKV--------YAGGME 107 Query: 117 IKEQEVYMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRS 152 +K + V +G +P+M + F+ING+ERV+V + + Sbjct: 108 LKTERVRIGHLPIMVKSKGCYLYGLDEKRLISKGEDPRDPGGYFIINGSERVLVMRDDIA 167 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRG---SWLDFE-FDPKDNLFVRIDRRRKLPATI 208 P + + A+I+ R + L E + + R +P + Sbjct: 168 PNKVIVEQT--VAENKPYSHVAQIVSARAGLRTRLYLEYYMRDGTIKASTGALRGIPVAM 225 Query: 209 ILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 +L+AL E I+D + + ++ L + R E I + GR Sbjct: 226 LLKALGLERDEDIVDAIS--SVDDEIRSEFLYSLDDVQRRAEEEGAQIITREEALDYIGR 283 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 R+ R I EY+ + + E + ++ LL + Sbjct: 284 RLVQAVPRA------DRIRYAKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIEKLLKVVRG 337 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 D + ++ LR+ T + Y+++R + E S + Sbjct: 338 KLEPD---------DKDHFSNKRLRLSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYD 388 Query: 388 L 388 L Sbjct: 389 L 389 >UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEV5_CHLKE Length = 1312 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 298/1286 (23%), Positives = 492/1286 (38%), Gaps = 95/1286 (7%) Query: 135 TFVINGTERVIVSQLHRSPGVF--------FDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 F N +I + F F S K K + + I W+ F Sbjct: 22 RFYYNDLYVLIPDLIDIQRNSFQNFLQCGLFRSLKKKKSFIFRKSIHKLEIVLFPEWIQF 81 Query: 187 ---EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 E D K L + ++++ + ++ + + + + +P Sbjct: 82 KKPELDSKKALHFGKTYGSYIYIPVLVKFSGWKKNKLEWILLGFLPLLTKQGHFIINGIP 141 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + + + N +Y+ T ++ + I + ++ + ++ Sbjct: 142 RVVLHQ-----MIRNPGIYILSKDSKTRVATIRIVPEQGSWINITIDKKYRIWITTRFLR 196 Query: 304 ES-TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD----HGPYISETLRVDPTND 358 + + + A ++ L S ++ + D + + Sbjct: 197 KKISVLIFLQALGFSLSEIYKNLGYSELLQVSFVKELQPDEKTRNDRILIRANLWRHPVT 256 Query: 359 RLSALVEIYRMMRPGEPPTRE------AAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 + A +Y TRE A+ F ++ ++ +GR +F L Sbjct: 257 QKQAQRYLYAHYLEYSSQTREQVVTDQTAQEFFLKNVWNYKNRNIGYLGRKQFREKLGST 316 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L+ DDI K + + + DDID+L N+R+R GE ++ GL E Sbjct: 317 LSITETWLTADDISLATKASLKLLCNEQVADDIDNLDNKRVRGCGEFLYDELNSGLQEFE 376 Query: 473 RAVKERLSL-----------GDLDTLMPQD-MINAKPISAAVKEFFGSSQLSQFMDQNNP 520 + + S + T + + +K IS + K FF LSQFMD+ NP Sbjct: 377 HVLNRKFSNISISSKNSIFGNECATFWRFNRSLLSKYISKSWKNFFTGGTLSQFMDETNP 436 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L+E THKRR++ LGPGG++ ++ ++R +HPT+YGR+CPIETPEG N GL+NS +VY Q Sbjct: 437 LAETTHKRRLTVLGPGGVSGKQTTIQIRGIHPTYYGRLCPIETPEGQNAGLVNSFTVYTQ 496 Query: 581 TNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 N G LETP+ +V G + E+ HYLS E V+A A+ L + + R Sbjct: 497 RNSQGILETPFFEVYKGQIQKELKAHYLSPQTESYLVLAPADICLSPWNQLPKTDLPVRK 556 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + +Q+ + Q++SV SLIPFLEHDDANRALMG+NMQRQAVP LR + Sbjct: 557 NWKFEYTIWNQISKQSIGLLQMISVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPENA 616 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 LV TG+E V D + + G + V +++I ++ + + + +K Sbjct: 617 LVSTGLETRVISDVNHGIRSSKTGYITAVSSTKI--QLYKGNYVKDKQNGNTNKNSKIRS 674 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 N + + F+ ++ + + D Sbjct: 675 FFNNASVFNKFSLLKKYKAVNQKQKQQKKFFTHLTFFSKTQTFNYFLHYHNHKYFD---- 730 Query: 819 SERVVQEDRFT----------TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD-- 866 S+++ Q F + + K ++ D Sbjct: 731 SKKIYQVTGFHFPVVIPIHLLFSFYVLFYSILENYKNEKQQELELEFLFLFQKFYFWDQQ 790 Query: 867 -----ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 ++ + +I++ K + +E ++ + + R Sbjct: 791 SFWKNKNWNLKKQENKNLKNIILSLSQTKKQKSSIKKEYSYSLDNYQRTNQSTCITQRPN 850 Query: 922 NGVSGTVIDVQVF---TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 V + + K + + + + + I + L + Sbjct: 851 LKEGDWVQITDIIADGSASAGGKLALGKNVLIAYVPWEGYNFEDAILISDKLLEKDVFTS 910 Query: 979 LVAG--GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 L VE + ++ L + + QL E +E + Sbjct: 911 LHIDYYEVEVKNTQYGLETITNKVPLEIDASSKDILQLQRLNSNGLIEIGSWVEEGDYLV 970 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRI----QPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 + L+P I K Y + I P K KGV + ++ +P E Sbjct: 971 GKISPLSPKGPSIYKQYEKLYNVIWQRDNPTFKNTSLRVPKGVEGFVLDVQILPPKETDV 1030 Query: 1093 PVDIVLNPLGVPSRMNIGQI----LETHLGMAAKGIGDKI--NAMLKQQQEVAKLREFIQ 1146 L P R+ I + ++ MA + I + Q I Sbjct: 1031 LP---LAPKNAILRVRIALLQKRNIQVGDKMAGRHGNKGIISKILPCQDMPYLPDGNPID 1087 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP--IATPVFDGAKEAEIKELL----- 1199 + + A + + L Sbjct: 1088 IVLNPLGVPSRMNVGQILESLLGFAGKYLHESYKIELFDEKFGAEASRSLVYSKLYEASL 1147 Query: 1200 -----KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 L + G+I+L+DGRTGE F++PVTVGY YMLKL HLVDDK+HAR+TG YS V Sbjct: 1148 KTANPWLFEPQHPGKIKLFDGRTGESFDQPVTVGYAYMLKLIHLVDDKIHARATGPYSAV 1207 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQ 1314 TQQP+ G+A+ GGQR GEMEVWAL+AYGAAYTLQE+LT+KSDD++GR + I Sbjct: 1208 TQQPVRGRARNGGQRLGEMEVWALQAYGAAYTLQELLTIKSDDIDGRKEAVFRIYTNRSL 1267 Query: 1315 MEPGMPESFNVLLKEIRSLGINIELE 1340 + G PESF VLL+E++SL N+++ Sbjct: 1268 -KFGQPESFKVLLRELQSLCFNLQIY 1292 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 72/390 (18%), Positives = 145/390 (37%), Gaps = 23/390 (5%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 + + R+ + + +P L+ IQ +SFQ F++ + +F +F + Sbjct: 16 KDQFNRRFYYN-DLYVLIPDLIDIQRNSFQNFLQCGLFRSLKKKKSF--IFRKSIHKLEI 72 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 L + +P D ++ G TY + + + + + K K + + +G Sbjct: 73 VLFPEWIQFKKPELDSKKALHFGKTYGSYIYIPVLVKF-------SGWKKNKLEWILLGF 125 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 +PL+T G F+ING RV++ Q+ R+PG++ S KT + RI+P +GSW++ Sbjct: 126 LPLLTKQGHFIINGIPRVVLHQMIRNPGIYILSKDSKT-----RVATIRIVPEQGSWINI 180 Query: 187 EFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 D K +++ R+K+ I L+AL ++ +I + ++ EL P+ Sbjct: 181 TIDKKYRIWITTRFLRKKISVLIFLQALGFSLSEIYKNLGYSELLQVS---FVKELQPDE 237 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 + V + + + LE +V + A + K+ + Sbjct: 238 KTRNDRILIRANLWRHPVTQKQAQRYLYAHYLEYSSQTREQVVTDQTAQEFFLKNVWNYK 297 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 + + L + L + + L + D + L + Sbjct: 298 NRNIGYLGRKQFREKLGSTL---SITETWLTADDISLATKASLKLLCNEQVADDIDNL-D 353 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRY 395 R+ GE E L E ++ Sbjct: 354 NKRVRGCGEFLYDELNSGLQEFEHVLNRKF 383 >UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota RepID=B6KTL0_TOXGO Length = 1388 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 208/1441 (14%), Positives = 402/1441 (27%), Gaps = 270/1441 (18%) Query: 30 IQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRG 89 + SF F+E L+ + + +P +D + Sbjct: 62 PHVRSFDSFLEVY------LQEMVKDLP---------------VVYVDPSYDPDK-HEAN 99 Query: 90 VTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQL 149 YS +KL + ++ + + +G +++++ + Sbjct: 100 PFYSPTDYIKLAI-------SSVSIGAPVRFDAAGARLQPGVGG-----SGDDQLLLPKH 147 Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATII 209 R + + + + R D K+ + P + Sbjct: 148 CREAHITYGAPLKVSFV-------------RSDRRDGAALKKEVVV------GMAPLMVR 188 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDIEANGKVYVEKG 266 + + +L + + +R + +F I + + Sbjct: 189 SKLCSTRGMSPAELQRAGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALKRPAFANRD 248 Query: 267 RRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL--ICAANMELSLDLL 322 T A +R D + ++ G+ + ++ L Sbjct: 249 AFCTPYAVLLRSQRYDGTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLRCLAGNLSL 308 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAE 382 A+L + + + E + T L P + Sbjct: 309 AQLKAKLLEGCWDDAADATARSQLVEELWGQEATFADSDVLE--------NRPLHQLGLL 360 Query: 383 SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 + A G +L S D + + KKL ++ GK Sbjct: 361 FWKAVHWLLRPGSSYEAAGTYVIRHFVLPHLSSWSE--KFDMALLMYKKLRLLKQGKISA 418 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK----ERLSLGDLDTLMPQDMINAKP- 497 + +D + + G++ + + L ++ + + + P I + Sbjct: 419 ESLDSFAYQEVVLPGQILASVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKF 478 Query: 498 -----------ISAAVKEFFGSSQ-------------LSQFMDQNNPLSEITHKRRISAL 533 I+ + F + + D+ N ++H R A+ Sbjct: 479 FDLATDRCCPEIAQKLSYFMATGNIRTTQLDLQQLSGWTVTADRLNVHRFLSHFR---AV 535 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT------------ 581 G VR + +G +CP+ TP+G GL+ L+ A Sbjct: 536 HRGQFFTTMKTTSVRKLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARAS 595 Query: 582 ---------------NEYGFLETPY--------RKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 G + R G SA V Sbjct: 596 IRLFLHKHGVCVDLEGTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFPLVVDGA 655 Query: 619 ANSNLD--EEGHFVEDLVTCR-SKGESSLFSRDQVDYMDVST----QQVVSVGASLIPFL 671 LD + ++E + + E + V + + + L+ + Sbjct: 656 VVCRLDRKDFAFWLETFRDLKSREAEDFKQHWEVVGFPHNGGNLESIFIFTFPGRLVRPV 715 Query: 672 EHDDANRALMGANMQRQ-------AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 H ++ R + + R+D+ L G + V S V+ + Sbjct: 716 RHIESGRIEYIGPLMQPWAAIACRPSDVKRSDRLLRLHGPVVSEIVSSSVSTDSLASRFQ 775 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 S + +E+ GE G + ++ P ++ E + + Sbjct: 776 ALSVDSASQERHSEETGETGETGETGESGKRF------------PLIAANEASGTDALFS 823 Query: 785 DGPSTDLGELALGQNMRVAF----MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 + L + ++ P++ +N + +++++ T H + Sbjct: 824 FSAPVKYEYVELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDN 883 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + +L IT P V + D Sbjct: 884 KAYRL----ITPQRPLVRTEDYRRFDFD-------------------------DYPSGVN 914 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 + A+ D++D+ + +K ++E K + Sbjct: 915 AVVAVMCYTGFDMEDA----------------------MILNKGSMERGAFHGCVYKSKV 952 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 + + + + L D + +G E+ Sbjct: 953 IDAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFPAIGAKIEKGNTYCRVQTSSSSS 1012 Query: 1021 LKHEFEKKLEAKRRKITQGD-------------DLAPGVLK--IVKVYLAVKRRIQPGDK 1065 + K + D LA LK + L R+ GDK Sbjct: 1013 SFASNGIQHAYKDGETAYVDGVTFISPPDAAHERLAKSGLKGCRASLRLRCVRKPVIGDK 1072 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 A RHG KG++S + P EDMP+ E+G DI+ NP G PSRM IG ++E+ G AA G Sbjct: 1073 FASRHGQKGILSMLWPHEDMPFTESGLVPDILFNPHGFPSRMTIGMLIESMAGKAAAVHG 1132 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 +A ++ + G K + EE + + Sbjct: 1133 AYQDATPFREFPPQSADGKNKWVDQGGYHGWVKRGERYRTPEEERQAQDEP--------- 1183 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 + L G LY G G + G +Y +L H+V DK Sbjct: 1184 ---ETPVDYFGKALMRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQV 1240 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK-M 1304 R+TG +T QP+ G+ + GG RFGEME AL ++GAA LQ+ L SD Sbjct: 1241 RATGPVDALTHQPVKGRKRHGGVRFGEMERDALISHGAAALLQDRLLHCSDAHKTFCCPS 1300 Query: 1305 YKNIVDGNHQME------------------------PGMPESFNVLLKEIRSLGINIELE 1340 +I+ + +P F L E+ ++ + I L+ Sbjct: 1301 CGSILTPSAVPNLRGRTAGGKRAVPFCRVCQVPCRLIMVPYVFRYLANELAAMNVTIRLK 1360 Query: 1341 D 1341 Sbjct: 1361 L 1361 >UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenophorea RepID=Q236N3_TETTH Length = 1141 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 186/1200 (15%), Positives = 370/1200 (30%), Gaps = 210/1200 (17%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 + F+ K +R K+P + N L + + Sbjct: 101 CELTFNGKKEDSLRKVNIGKMPIMLGSSHCNLIKALELGQVHK---------------LQ 145 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 E F I+ KV++ + + R + +K+ + V + K + I Sbjct: 146 ECANDPRGYFIIKGVEKVFLIQEQLADNRIFIEEDKNKELVANVKSNTVDTKSITSLIIK 205 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLF------TNDLDHGPYISETLRVDPTN 357 + ++ + + LL G + + +F + L+ E + Sbjct: 206 NHKIYVKVSSFSKP-IPLLIFFKAYGVESEQEIFQLIGTEEHLLNRLALCLEDIEQSQVY 264 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 + AL + + +RP + E R ++ V Sbjct: 265 TQQQALEYLSKRLRPKTFQD----KKYSSRNPVDEARDIITNVVLCHIPCKNYNYYP--- 317 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 + + ++LI+ + ++D D+ GN+R++ G E F + V++ Sbjct: 318 ---RAIFLGLMARRLIEALDDPSKIDKRDYYGNKRMKCAGWYLELLFEDKFKQFNMMVRK 374 Query: 478 RLSLGDLDTLMPQDMI----------NAKPISAAVKEFFGSSQLSQF---MDQNNPLSEI 524 LS I N I+ + + + MD + Sbjct: 375 ELSKEIEKHKNKSYPIKNRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDTVGVTQVL 434 Query: 525 THKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 I+A+G + R R + +H+G VCP +TP+G + GL +LS+ A Sbjct: 435 ARISYIAAIGMMTRMNSQFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLSLMA 494 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLDEEGH----FVEDL 633 + + + ++I + S+ E E + N + F + L Sbjct: 495 HITIEEK-KNVLSTIALNLGMEDIGHYSSGEIHEDKNYMVFLNGQIIGMHRDPEAFAQKL 553 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 R +G+ + + + + L L + + L+ + Sbjct: 554 RFMRRRGKIGTTISISTNSEKRAV-YLDTDDGRLCRLLIVVENGKPLITNDHLNDLKEKR 612 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 ++ L R G+++Y+D + + + + I Sbjct: 613 KSYLDL-------------------IRMGLIEYIDVNEE----DNCYIAIKQEDIP---- 645 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 RS + + P T LG + +P+ +N Sbjct: 646 ---NRS-------------------KTTHMEIDPLTLLG-------VVSGLVPYPHHNQA 676 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 + ++ I ++R + + I P + + Sbjct: 677 SRNTFQCAMGKQALG----IIGSTSMNRVDTILYQLIYPQTPLLKTKVIEYAGYDKFPA- 731 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 A+ D++D+++ + + V Sbjct: 732 ------------------------GHNASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMV 767 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 F + E K + L+ K+ + + + + A L G Sbjct: 768 FKKYETEIQKLKMSGLTELLRGPPKEAEGSYKKKQNRVLKKFGA-LDDDGTPIVGASINN 826 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA---PGVLKIV 1050 D + Q + + + K +K+ + D + I+ Sbjct: 827 GDVLFNKYTPLLTLEQQRGRDILNNNSVSEYIHNPTTFKGKKLARIDRVIRSQQDGNVII 886 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 K + RR + GDK + RHG KG+I I EDMP+ E G D+ Sbjct: 887 KTIVRETRRPEYGDKFSSRHGQKGIIGLIVNQEDMPFSEKGWVPDL-------------- 932 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 I+ H + +G + E++ Sbjct: 933 -IMNPHGYPSRMTVGKLL---------------------------------------ELL 952 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 + G F G K A++ +L +G+ + G TGE + V G + Sbjct: 953 GSKAAVLSGQFKYGTAFGGDKMADLSSILVQNGFSYTGKDVIISGITGEYMQCYVFCGPV 1012 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 + +L H+V DK+HAR+ G + +T+QP G+A+ GG R GEME +L A+ ++ L E Sbjct: 1013 FYQRLKHMVADKVHARAKGRVTTLTRQPTEGRAKDGGLRLGEMERDSLLAFASSNLLIER 1072 Query: 1291 LTVKSDDVNGRTKMYKN---------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 L + SD + + + + + MP + +L +E+ S+ I +L Sbjct: 1073 LMISSDKFSVQVCEKCGFIQHTNSCKMCQTDQVSKVVMPYACKLLFQELLSMNIKPKLNL 1132 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 140/1079 (12%), Positives = 300/1079 (27%), Gaps = 207/1079 (19%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M E R + L +S + SF FI L+ S + Sbjct: 1 MASKTAEPLREKTR--IIDSYLAHNGFVSHHIQSFNYFI------NIKLQQIITSSMNKE 52 Query: 61 ---SYSGNSELQYVSYRLGEPVFD------VQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 + L+Y + P D QE ++ +Y+ + V L + Sbjct: 53 LRLDTDNSFLLEYTKIYIEPPAHDNKTMMLPQEARLSNSSYAGNIYVDCELTFNGK---- 108 Query: 112 GTVKDIKEQEVYMGEIPLMT-------------------------DNGTFVINGTERVIV 146 K+ ++V +G++P+M G F+I G E+V + Sbjct: 109 ---KEDSLRKVNIGKMPIMLGSSHCNLIKALELGQVHKLQECANDPRGYFIIKGVEKVFL 165 Query: 147 SQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK-LP 205 Q + F + V N + ++V++ K +P Sbjct: 166 IQEQLADNRIFIEEDKNKELVANVKSNTVDTKS----ITSLIIKNHKIYVKVSSFSKPIP 221 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 I +A +EQ + + L +E + + + + Sbjct: 222 LLIFFKAYGVESEQEIFQLIGTEEHLLNRLALCLEDIEQ--------SQVYTQQQALEYL 273 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 +R+ + + + ++ + I V+ ++ L+ L Sbjct: 274 SKRLRPKTFQDKKYSSRNPVDEARDIITNVVLCHIPCKNYNYYPRAIFLGLMARRLIEAL 333 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 + N L + + + + R E + Sbjct: 334 DDPSKIDKRDYYGNKRMKCAGWYLELLFEDKFKQFN---MMVRKELSKEIEKHKNKSYPI 390 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSL-LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 +N S + + + N I+ + + + + G + Sbjct: 391 KNRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDTVGVTQVLARISYIAAIGMMTRMN 450 Query: 445 IDHLGNRRIRSVGEMAENQF------------RVGLVRVERAVKERLSLGDLDTLMPQDM 492 +R++ + + + GL + + +++ + ++ Sbjct: 451 SQFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLSLM-AHITIEEKKNVLSTIA 509 Query: 493 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD--- 549 +N E G + + N + + +I + + +R Sbjct: 510 LNLGM------EDIGHYSSGEIHEDKNYMVFLNG--QIIGMHRDPEAFAQKLRFMRRRGK 561 Query: 550 ------VHPTHYGRVCPIETPEGPNIGLI------NSLSVYAQTNEYGFLETPYRKVTDG 597 + R ++T +G L+ L N+ Y + Sbjct: 562 IGTTISISTNSEKRAVYLDTDDGRLCRLLIVVENGKPLITNDHLNDLKEKRKSYLDLIR- 620 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 I Y+ EE N IA K E + +R + +M++ Sbjct: 621 --MGLIEYIDVNEEDNCYIA--------------------IKQE-DIPNRSKTTHMEIDP 657 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 ++ V + L+P+ H+ A+R M +QA+ Sbjct: 658 LTLLGVVSGLVPYPHHNQASRNTFQCAMGKQAL--------------------------- 690 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 G++ +R+ + + Q P + Sbjct: 691 ----GIIGSTSMNRVDTILYQ------------------------LIYPQTPLLKTKVIE 722 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 G + G N +A + ++GY+ ED+ ++++ + T+ ++ Sbjct: 723 YAG----------YDKFPAGHNASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMVFKKYE 772 Query: 838 CVSRDTKL-GPEEITADIPNVGEAALSK-----------LDESGIVYIGAEVTGGDILVG 885 + K+ G E+ P E + K LD+ G +GA + GD+L Sbjct: 773 TEIQKLKMSGLTELLRGPPKEAEGSYKKKQNRVLKKFGALDDDGTPIVGASINNGDVLFN 832 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 K TP LT E++ R I + + G ID + ++ + Sbjct: 833 KYTPL----LTLEQQRGRDILNNNSVSEYIHNPTTFKGKKLARIDRVIRSQQDGNVIIKT 888 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 + E + + K S Q GL + + L P + + Sbjct: 889 IVRETRRPEYGDKFSSRHGQKGIIGLIVNQEDMPFSEKGWVPDLIMNPHGYPSRMTVGK 947 >UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax=Euglena RepID=RPOB_EUGGR Length = 1082 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 266/1226 (21%), Positives = 484/1226 (39%), Gaps = 172/1226 (14%) Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 +NG RV + L F K + L + I + G + F+ D Sbjct: 2 VNGC-RVRSNLLDIQRNSFRSFLKK---GLVEELRKIKDIAHEGFRISFQTDNVKY---- 53 Query: 198 IDRRRKLPATIILRA---LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 ++ K+ A L+ + + +++ + + + L E +F Sbjct: 54 --KKPKISAEFALKNGETYSLSVHIPVEVTYNNMFLVRNK---YILFAKIPLMTEKGTFI 108 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 N ++ V + R + + +D + I + + + + Sbjct: 109 FNGNKRIMVNQIIRSPGVYFEKNRYND----SIFATLIPTFGSWLTFKIDQDEGIFVKVD 164 Query: 315 MELS-LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + + L+ L G R + + P ETL+ + E Y++ P Sbjct: 165 KIKTAIPLINFLKCLGLSRKKFFLYL---NDPIFIETLQESESYGIRLEFFEFYKIFFPN 221 Query: 374 EP-PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI-EGSGILSKDDIIDVMKK 431 E A + F +YDL VGR + N + R E + + L +D++ + Sbjct: 222 EVNVRFGNARKFLRSKFMDPRKYDLGEVGRFRVNTKIYRSEFFQSNRTLQPEDVLGIAHY 281 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL----SLGDLDTL 487 LI+++ G D+ID L N+ +RS+GE+ ++QFR+ L +E ++KE+L T Sbjct: 282 LIELKKGMIPFDEIDDLKNKLVRSIGELLQSQFRIILNELESSLKEKLIFLYKNPSEKTF 341 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 N+ I+ +++FF + LSQ +D N LSE+THKR++S GP GL +ER +V Sbjct: 342 RLSRFFNSYFITNRIRKFFSVNPLSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDV 401 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R+++ + Y + E + + D Sbjct: 402 REINTSQ-----------------------YGRVCPIETSEGKNAGLILSLAKDVRVDKY 438 Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 E + ++ S Q Y V+ V S Sbjct: 439 GFLESPFYKV-LRGKIETNK-------------GIYFISSAQEKYFTVAPFDVFRSSQSN 484 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYV 727 + L+G + + + + ++ + G+V ++ Sbjct: 485 LL------DKNKLLGVKRSKIFSYSFSKNIDFISISTDQF---------TSLGTGLVPFL 529 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP-VERGDVLADG 786 + + + M ++P + G + + A Sbjct: 530 EHNDANRVLMGSNMQRQSL---------------ILLEKEVPFIKTGREALINRESDATV 574 Query: 787 PSTDLGELALGQNMRVAFMPWNGY--NFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 + G++ ++ + Y N E ++ + ++ + + K Sbjct: 575 LAKSSGKVIYSSLKKI-VIQEEEYCANIE---FFNKNYSFFNLLGCLN-EISQKNFKLIK 629 Query: 845 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 ++I + + IV+ G V G I+ ++ + + +L A Sbjct: 630 KVNQKIYFLESPKKSNHGVYIQKIPIVHEGEWVRKGQIIADGMSTLR-GGICLGKNVLVA 688 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE-- 962 G + + +D+ + +S ++ +FT ++K K + +E + + + Sbjct: 689 YLGWEGYNFEDAVI-----ISERLVFEDIFTSIHMKKFKTFIVNDEKKGENISMFIPNAS 743 Query: 963 --ELQILEAGLFSRIRAVLVAGGVEAE----KLDKLPRDRWLELGLTDEEKQNQLEQLAE 1016 ++ L+ +I + + A V KL P+++ L ++ + + L Sbjct: 744 LKTIKNLKNNGIIKIGSEIKAQDVLIGRIKVKLKNTPKNKMLIAFFGNKVR--KDVSLRS 801 Query: 1017 QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVI 1076 + ++ K+ + V +++A KRRIQ GDK+AGRHGNKG+I Sbjct: 802 PRSLVGIVTSVEILCKKSNCS------------VLIHVAEKRRIQIGDKIAGRHGNKGII 849 Query: 1077 SKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQ 1136 SKI P DMP+ +GTPVD++LNPLG+PSRMN+GQ+ E+ L +++ + ++ + Sbjct: 850 SKIVPSIDMPFLPDGTPVDMILNPLGIPSRMNVGQVFESLLNLSSLFLKERYKIQPFDEV 909 Query: 1137 EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIK 1196 + + + A R K D Sbjct: 910 QTSMNSKSFVYKKLNEARKRTKKD------------------------------------ 933 Query: 1197 ELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 L + G+ LYDGR F+ PV GY Y+LKL H+V DK+HAR TG YS VTQ Sbjct: 934 ---WLFNPNYPGKAFLYDGRNCRPFDHPVAFGYAYILKLIHMVKDKIHARVTGPYSSVTQ 990 Query: 1257 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME 1316 QPL GK++ GGQRFGEMEVWA+E +GAAY LQE+LT+KSDDV R++ ++++G + + Sbjct: 991 QPLRGKSKNGGQRFGEMEVWAIEGFGAAYLLQELLTIKSDDVLNRSEALFSLINGTYFSK 1050 Query: 1317 PGMPESFNVLLKEIRSLGINIELEDE 1342 P +PE+F + + E++SL I+I++ Sbjct: 1051 PNIPEAFKLFILEMQSLCIDIKIFTN 1076 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 65/372 (17%), Positives = 129/372 (34%), Gaps = 35/372 (9%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQEC 85 LL IQ +SF+ F+++ GL R + I Q + + +P + Sbjct: 10 NLLDIQRNSFRSFLKK------GLVEELRKIKDIAHEGFRISFQTDNVKYKKPKISAEFA 63 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVI 145 G TYS + + + + ++ + + +IPLMT+ GTF+ NG +R++ Sbjct: 64 LKNGETYSLSVHIPVEVTYNNMFL-------VRNKYILFAKIPLMTEKGTFIFNGNKRIM 116 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK-L 204 V+Q+ RSPGV+F+ ++ A +IP GSWL F+ D + +FV++D+ + + Sbjct: 117 VNQIIRSPGVYFEKNRYNDSIF------ATLIPTFGSWLTFKIDQDEGIFVKVDKIKTAI 170 Query: 205 PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE-----ANG 259 P L+ L + ++ + + E + E F E N Sbjct: 171 PLINFLKCLGLSRKKFFLYLNDPIFIETLQESESYGIRLEFFEFYKIFFPNEVNVRFGNA 230 Query: 260 KVYVEKGRRITARH-------IRQLEKDDVKLIEVPVEYIA---GKVVAKDYIDESTGEL 309 + ++ ++ R K + +A I+ G + Sbjct: 231 RKFLRSKFMDPRKYDLGEVGRFRVNTKIYRSEFFQSNRTLQPEDVLGIAHYLIELKKGMI 290 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 +L L+ + + + + L +P+ Sbjct: 291 PFDEIDDLKNKLVRSIGELLQSQFRIILNELESSLKEKLIFLYKNPSEKTFRLSRFFNSY 350 Query: 370 MRPGEPPTREAA 381 + Sbjct: 351 FITNRIRKFFSV 362 >UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0MW98_PHYIN Length = 1179 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 179/1215 (14%), Positives = 338/1215 (27%), Gaps = 257/1215 (21%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFDIEANGK 260 +P + + + DL + L+ + Sbjct: 144 IPIMVRSKRCHLNGMAPTDLVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRG 203 Query: 261 VYVEKGRRITAR-HIRQLEKDDVKLIEVPVEYIAGKVVAKDY-IDESTGELICAANMELS 318 + +G T + K D + V V Y+ + + + + ++ Sbjct: 204 AFANRGDLYTELAVFMKCVKRDQSAVTVTVHYLQDGNATVRFGVKKQEFMIPVGLVLKAL 263 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 L + R + T I + R AL + + R P Sbjct: 264 YPLTDREIYERVLRGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYVY 323 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI--EGSGILSKDDIIDVMKKLIDIR 436 + + VG + L E + + +++KL Sbjct: 324 DN--------------MNNVEVGSKLLDDFLFVHIPKGEKGRTQKVELLCLMLRKLYAFA 369 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMI- 493 G D+ D + N + G + + L A++ + + + D + Sbjct: 370 KGDVPEDNADSVMNHELLLPGHLYLMIMKEKLQESLVAMRANILKETQNKKRAVVMDQVF 429 Query: 494 ------NAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISAL 533 I A+ F + L + ++ N +H R ++ Sbjct: 430 LRKMWERTPNIGNAMTYFLNTGNLRSSSGLDLLQIAGYTIVAEKLNYYRYFSHFR---SV 486 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 G E VR + P +G +CP+ TP+G GL+N L+V + + + Sbjct: 487 HRGQFFTEMKTTAVRKLLPDSWGFLCPVHTPDGSPCGLLNHLAVECELVCHPAFKADDYL 546 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 + + + L I Y A+ L ++ ++ + G + ++ + Sbjct: 547 QQEVKLARFLASLGMIPTSGY----ADGALIVPYSYLPVMMNGKVLGGAPAEVCKRIAEV 602 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 + S DAN + + P G Sbjct: 603 LRKVKSAKSSEER--------DANGIVSNL---EVCLILPTRGGPFPGL----------- 640 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 Y+ A + +M I M V + Sbjct: 641 ------------YLSADAARMSRPVKQMDTKRIE----------------YIGPMEQVFM 672 Query: 774 GEPVERGDVLADGPSTDLGEL-ALGQNMRVA-FMPWNGYNFEDSILVSERVVQEDRFTTI 831 + D+ P+T E+ VA P++ YN + ++ ++ T Sbjct: 673 DIACTKDDIR---PATTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPA 729 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 H I + + + ++ I + Sbjct: 730 H--------------------SIVHRSDNKMYRIQSPQIPIV------------------ 751 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 + + P G + V V + G + + + + Sbjct: 752 ----------------QNERLREYQLDEYPLGTNAVVA---VISYTGFDMEDAMILNKSS 792 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK--------LPRDRWLELGLT 1003 + + ++ + + K D L RD + +G Sbjct: 793 YERGFGHASVYKQLTVDISSNGKQGSATSKKYFSNIKTDGSGDYCSTKLDRDGFPHIGQV 852 Query: 1004 DEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 + E ++ E + + G+ + + L R Sbjct: 853 VNHGDPVASWIDETTGLPSVQKHKESEPAIIEQVNMIGNSSSSSEFTKASIKLRFCRNPT 912 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK + RHG KGV+S + P DMP+ E+G DI++NP P + Sbjct: 913 IGDKFSSRHGQKGVMSILWPQADMPFSESGISPDIIINPHAFP---------------SR 957 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G I +M A GA + +D + F E R+ Sbjct: 958 MTVGMLIESM----------------AAKTGALKGKYMDATPFQFSEKDRV--------- 992 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 LK G LY G +G + + +G +Y +L H+V D Sbjct: 993 ----------IDYFGSQLKEHGYNYMGSEPLYSGISGTVMQADIYIGVVYYQRLRHMVSD 1042 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K R+TG + +T+QP+ G+ + GG R GEME +L A+G A+ +Q+ L SD Sbjct: 1043 KSQVRATGPMNSLTRQPVKGRKKGGGIRLGEMERDSLLAHGCAFLVQDRLLNCSDKHIAT 1102 Query: 1302 TK----------------------------------MYKNIVDGNHQMEPGMPESFNVLL 1327 G MP F L Sbjct: 1103 VCTNCGSLLSNATQRSTVETAGQGEIAVAMKSKTQWYCTVCQTGESCQPVAMPYVFRYLA 1162 Query: 1328 KEIRSLGINIELEDE 1342 E+ ++ I + L + Sbjct: 1163 NELAAMNIKMSLTLK 1177 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 65/400 (16%), Positives = 130/400 (32%), Gaps = 69/400 (17%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF--PIQSYS-GNSELQYVSYRLGEP- 78 + L+S LDSF F+ + GL+ A + P++ + ++ + ++G P Sbjct: 40 KLQKLVSPHLDSFNFFLTE------GLDLAVADMCKVPVELPNQHRMDIWIENAQIGYPT 93 Query: 79 ---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 EC+ RGV+Y+APL V L + E + +GEIP+ Sbjct: 94 TENQITGEQKLLPSECRQRGVSYTAPLVVTLARSFGGSQNVERLQR-------VVGEIPI 146 Query: 130 MTDNG------------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKTH 165 M + F+ NG ER + L + + Sbjct: 147 MVRSKRCHLNGMAPTDLVKAREEANEMGGYFICNGNERCVR-LLQMPRRHHIMAVRRGAF 205 Query: 166 SSGKVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRK---LPATIILRAL-N 214 ++ LY + + + + N VR +++ +P ++L+AL Sbjct: 206 ANRGDLYTELAVFMKCVKRDQSAVTVTVHYLQDGNATVRFGVKKQEFMIPVGLVLKALYP 265 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR-RITARH 273 T +I +E+V+ +N V LR + + R + Sbjct: 266 LTDREI----YERVLRGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPY 321 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 + + ++ +++ + + EL+C +L + + + Sbjct: 322 VYDNMNNVEVGSKLLDDFLFVHIPKGEKGRTQKVELLCLMLRKLYAFAKGDVPEDNADSV 381 Query: 334 E--TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 L + + E L+ R + L E R Sbjct: 382 MNHELLLPGHLYLMIMKEKLQESLVAMRANILKETQNKKR 421 >UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomatidae RepID=Q583H5_9TRYP Length = 1190 Score = 495 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 203/1292 (15%), Positives = 381/1292 (29%), Gaps = 204/1292 (15%) Query: 101 RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVI---------NGTERVIVSQLHR 151 ++ + + ++ IP M + ++ Q Sbjct: 45 EIISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESEPDQYRL 104 Query: 152 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR---RRKLPATI 208 S + S + P D +D + + I R + P Sbjct: 105 SLEDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSREEQPYRT 164 Query: 209 ILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 L+ + I + + ++ ++ + E + F + KV + + R+ Sbjct: 165 FLQNMELGRIPI--MLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQERQ 222 Query: 269 ITARHIRQLEKDDV-KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 + I+ VE K + E L +A++ + Sbjct: 223 AANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGH-GYENLLCRVAQMDE 281 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVD-PTNDRLSALVEIYRMMRPGEPPTREAAESLFE 386 D+ I +T+ D L L E TR+ A Sbjct: 282 L-IPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSMEDASTLEIFTRDEALWFIG 340 Query: 387 NLFFSED-RYDLSAVGRMKFNRSLLREEIEGSGIL--SKDDIIDVMKKLIDIRNGKGEVD 443 +D R +L + R LL I ++ +L+ + G+ E Sbjct: 341 KRLGKQDSRENLQREAQDLLMRDLLPHMGVDCAADRGKCLFIGYMVHRLLLLALGRREDT 400 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL---SLGDLDTLMPQDMINAKPISA 500 D D LG++RI G + Q LV+V R + + + S + +++ + I+ Sbjct: 401 DRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVVSFGRILHNRLITD 460 Query: 501 AVKEFFGSSQ------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 ++ + +SQ +++ S +++ RRI ++ R Sbjct: 461 GMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQN----PISASSKATRPR 516 Query: 549 DVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSA 608 ++H T +G +CP+ETPEG +IGL+ +L++ + + V + LS Sbjct: 517 NLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQAVQSRITGFHSIALSD 576 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY---MDVSTQQVVSVGA 665 + + N L E L+ ++V + +V S G Sbjct: 577 LADVRVARVFVNGTLIGVHGDPERLLRDLRARRRGGELSNEVSIVRDIRDREIRVFSDGG 636 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 + L + +R + +A + + G V+ Sbjct: 637 RCLRPLFVVEKSR-----------IKLQKAGIGELLEPSTTLGGRREISWNKVMKKGYVE 685 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 +D + M P E G + Sbjct: 686 LIDCEEEDSLL--IAMVPSEVGK-----NYFYSH-----------------------CEM 715 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 PS LG + + +P+ +N S + + + I+ R Sbjct: 716 DPSMILG-------ICASIIPYPNHNQ--SPRNTYQSAMGKQAMGIYASNF--NMRMDTT 764 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 P V A+S + + + + AI Sbjct: 765 AHVLFYPQKPLVRTKAMSYMRSNDLPA-------------------------GHNAIVAI 799 Query: 906 FGEKASDVKDSSLRVPNG-VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA-KKDLSEE 963 + +DS + + G V + E+ KR + + Sbjct: 800 ACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREGREMFEIPDRKVCHVKRAD 859 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 L+ + ++ G + K +P+ EE ++ ++ + Sbjct: 860 YTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTL-------SEESPVSDTRILKRDCSISS 912 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 +K R +T+ + KV + + GDK RHG KG E Sbjct: 913 RAAEKGVVDRVMLTEN-----KGNRFTKVRIRTIKIPNIGDKFCSRHGQKGTNGIQFRQE 967 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP++ +G D+ I+ H + + I + Sbjct: 968 DMPFNHDGISPDL---------------IINPHAIPSRMTVAHLIETL------------ 1000 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 KG + F + + L Sbjct: 1001 ---------------------------AGKVACYKGGEVYATPFCSVVVEDFGKALTQLK 1033 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 L G RLY+G TG + + G Y +L HL DK+HAR G + +QP G+A Sbjct: 1034 LNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRA 1093 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----------------MYKN 1307 GG RFGEME + +YGA+ L+E L SD + + Sbjct: 1094 HEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNMCGTICAADTDQNLYKCQG 1153 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + +H + MP + +L +E+ S+ I L Sbjct: 1154 CDNDSHISQVLMPYACKLLFQELMSMAILPRL 1185 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 85/269 (31%), Gaps = 55/269 (20%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAF----RSVFP---IQSYSGNSE 67 + L+ Q+DS+ F+ + P L P ++S Sbjct: 44 WEIISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESEPDQYR 103 Query: 68 LQYVSYRLGEPVF-------------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV 114 L +G P EC++R +TY A +V L + +Y Sbjct: 104 LSLEDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSREE--QP 161 Query: 115 KDIKEQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLH 150 Q + +G IP+M + G F++NGTE+V+++Q Sbjct: 162 YRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQER 221 Query: 151 RSPGVFFDSDKGKTHS-SGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR-------R 202 ++ + + K K + + R + + + Sbjct: 222 QAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDE 281 Query: 203 KLPATIILRALNY-TTEQILDLFFEKVIF 230 +P ++ RAL+ + ++IL + Sbjct: 282 LIPLFVLFRALDMGSDKEILQTVVPDLKD 310 >UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E3T5_TRIVA Length = 1142 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 193/1264 (15%), Positives = 369/1264 (29%), Gaps = 235/1264 (18%) Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 +M N + + RV + R ++ D K + + Y G+ L ++ Sbjct: 62 IMNANKEVIFSENPRVYI----RYKNIYVDRPKIRNQILTPQMCRLSDETYSGNVL-VDY 116 Query: 189 DPKDNLFVRIDRRR---KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 D + V+ + KLP + + E Sbjct: 117 DFVNGSTVKSFNNQCIAKLPIMLQSNRC---------YLYNASDETFAK-------YDEC 160 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 F I +V + + R + + + K V K + + Sbjct: 161 RYDPGGYFVINGTERVVHVQEQSPYNRILIEHLANGNKTAVVNSSTSTHKTRVELIWKKD 220 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY------ISETLRVDPTNDR 359 T L A E + + G + + G + + + + Sbjct: 221 TLALHHNALSE-DIPIFVLFRAMGVTSDQEVIQLVDPTGAVGHLLMSSLQEIIKLEISTQ 279 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+ I R ++ +A + + S V Sbjct: 280 DQAIQLIERRLKFLTITGIDATREERNMKGYKGREFLRSMVLPH-------IPSTLTDFR 332 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ----FRVGLVRVERAV 475 + + + L+ +D D GN+R+ GE+ E F+ +++ V Sbjct: 333 RKSVFVGFMTRWLLLSAIDPRMIDGRDFFGNKRLELAGELLELLFEDLFKTFNASMQKTV 392 Query: 476 KERLSLGD-LDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLS 522 ++ +D ++++ I+ +K S SQ + + + L Sbjct: 393 SRTINKSKGIDPSNIAQAMHSETITHGLKYAISSGNWNITRFKMMRAGVSQLLGRMSYLQ 452 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++ RIS+ + + R ++P+ +G +CP +TPEG GLI + ++ Sbjct: 453 FVSMVTRISSH----FEKTQKVAGARLLYPSQFGFICPSDTPEGAQCGLIKNFALTVHVT 508 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN----LDEEGHFVEDLVTCRS 638 + P R+ + +E+ S E N I N +D+ R Sbjct: 509 VWADP-APARRTLLDLGVEELVVFSGEEISNNYIVMLNGEPIGIIDDPYSICRRFRQVRR 567 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + F+ + V + + L + K Sbjct: 568 RHWVDKFAAIWIVEAK-KCINVSTEAGRVCRPL-------------------IIVEDHKS 607 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 + + V G+++YVD + ++ + + + I+ R Sbjct: 608 KLTQELMDQVNRGEINFDYLLDNGIIEYVDVN----EMTDCLIAFNDKDIEE------ER 657 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 N C+N P +G++ LG + +P +N Sbjct: 658 KN---CVNDPPL-------AKGELRYFTHLEIHNAQMLG--VCAGVVPCPHHNQSPR--- 702 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 C +GP Sbjct: 703 ---------------NTYQCAMGKQAIGPTA----------------------------- 718 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 + + + ++ S ++ + ++ Sbjct: 719 --------LNIMHRVDKSTYFNCYPQQPMVQTRTIRLSRYHEMPCGQNAMVAIMSYSGHD 770 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA------GGVEAEKLDKL 992 +E + + + LS+ +L+ I + + + + L Sbjct: 771 IEDALLMNKASLDRGFGRRYYLSKLDLMLKNYQGGVIGDRIAPLDRERPENIASPQYSLL 830 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE----KKLEAKRRKITQGDDLAPGVLK 1048 D + G E+ + E + I + Sbjct: 831 DADGIIRPGERIEKGMIYANKYVPLNFEESPVKFMAQPARYNYYPVMIQNVSVYTTETTQ 890 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 ++K+ A RR + GDK + RHG KGVI I P EDMPY E+G D+++NP Sbjct: 891 VIKIKTADFRRPELGDKFSSRHGQKGVIGLIVPQEDMPYTEDGICPDMIMNP-------- 942 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 H + +G I E Sbjct: 943 -------HGFPSRMTVGKMI---------------------------------------E 956 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 ++ + G F + +I + L SG+ L G TGE + G Sbjct: 957 LVSGKVGILTGRIGNGTAFSSDRVKDIADDLIAAGYSYSGKDMLMSGITGEPLYAYIFFG 1016 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 ++ L H+V DKM AR+TG +T+QP G+++ GG R GEME L YGAA L Sbjct: 1017 PVFYQSLKHMVKDKMQARATGQVQYLTRQPTQGRSRQGGMRLGEMERDCLIGYGAASILY 1076 Query: 1289 EMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 E + + SD +V + + + MP + +L E+ ++GI + Sbjct: 1077 ERMLISSDVYEANVCAKCGFIGYEGYCTHCKTKEYMKIVRMPYACKLLFYELMAMGIAPK 1136 Query: 1339 LEDE 1342 + E Sbjct: 1137 VRLE 1140 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 49/342 (14%), Positives = 93/342 (27%), Gaps = 62/342 (18%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSY 73 + P +L L+ +QL+SF FIE I S + ++Y + Sbjct: 30 KWNLIPLILKSTGLIKLQLNSFNDFIESGLTKIMNANKEV-----IFSENPRVYIRYKNI 84 Query: 74 RLGEPVF-----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 + P Q C++ TYS + V V + ++P Sbjct: 85 YVDRPKIRNQILTPQMCRLSDETYSGNVLVDYDFVNGSTVKSFNNQ--------CIAKLP 136 Query: 129 LMTDNG------------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M + FVINGTERV+ Q Sbjct: 137 IMLQSNRCYLYNASDETFAKYDECRYDPGGYFVINGTERVVHVQEQSPYNRILIEHL--- 193 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ----- 219 + K + ++ + +P ++ RA+ T++Q Sbjct: 194 ANGNKTAVVNSSTSTHKTRVELIWKKDTLALHHNALSEDIPIFVLFRAMGVTSDQEVIQL 253 Query: 220 ----------ILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG--KVYVEKGR 267 ++ E + EI ++L+ RL+ T + + KGR Sbjct: 254 VDPTGAVGHLLMSSLQEIIKLEISTQDQAIQLIERRLKFLTITGIDATREERNMKGYKGR 313 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 + + ++ + Sbjct: 314 EFLRSMVLPHIPSTLTDFRRKSVFVGFMTRWLLLSAIDPRMI 355 >UniRef50_B2W234 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W234_PYRTR Length = 1167 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 185/1254 (14%), Positives = 373/1254 (29%), Gaps = 254/1254 (20%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF---VR 197 + +V Q S F D + K + + + + + D + + Sbjct: 109 KTKGLVKQHVDSYNHFVDVELKKIIKVNRFVRSDFDPKFLLEYTDIRVLAPNRQEEDDLD 168 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET------- 250 + P LR + Y ++D+ + + +++ +++ +P L+ Sbjct: 169 HHKSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCVLAGKN 228 Query: 251 ---------------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 F KV + + + R I + K +++ V + Sbjct: 229 DNDMAVMGECPLDPGGYFITRGQEKVILVQEQLNKNRVIVESAK---GIMQASVTSSTHE 285 Query: 296 VVAKDYIDESTGELICAANMELS-LDLLAKLSQSGHKRIETLF-------TNDLDHGPYI 347 K Y+ + G + N + ++ + G + + + D+ Sbjct: 286 RRTKTYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVASDKEILTMVAGEDSAYQDNFSIN 345 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 E + + AL I +R + P + Y L A+ + Sbjct: 346 FEACAKEEIFTQERALEYIGHRVRLVKKPLGTSR----------NRNYHLEAIECLSNVV 395 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 + + + ++++ VDD D++GN+R+ G+M F Sbjct: 396 LPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLELSGQMLSLLFEDH 455 Query: 468 LVRVE--------RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS---QFMD 516 R + +K+ + + D ++ I+ V+ + S MD Sbjct: 456 FKRFNHDFKLSIDKVLKKPVRAQEFDAFSHFS-VHKNHITMGVERAIATGNWSLKRFKMD 514 Query: 517 QNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 + ++ I+ALG + R R + P+ +G +C +TPEG GL Sbjct: 515 RAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGL 574 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE---EGNYVIAQANSNLDEEGH 628 + +L++ + P RK+ + +I L+ + EG Y + + Sbjct: 575 VKNLALMTHITTEDDDD-PVRKIVFMLGAQDICSLTGEDIHAEGVYSLCLNGTP------ 627 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 ++ R + + + + D + + R Sbjct: 628 -------------IAVTDRPKHFLNSFRGLRRMGRVSEFTSIHIDHDHCEVHIATDEGRI 674 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 +E + + A R G + + D G+ Sbjct: 675 ---------CRPMIIVENQRSKVTSRYLKALRKGTLDFEDFL--------------TRGL 711 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 Y L ++ N + + + L P T LG +P+ Sbjct: 712 VEY-LDTNEENDTNIAL------KETDINQHTTHLEIEPFTILG-------AVAGLIPYP 757 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 +N L + P V + Sbjct: 758 HHNQSPRNTY--------------------QCAMDTLLYLMVYPQQPMVKTRTIELTKYD 797 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 + + A+ D++D+ + Sbjct: 798 KLPA-------------------------GQNATVAVMSYSGYDIEDALILNKASCDRGF 832 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 QV + + A + A ++ Q + +++ A + AG K Sbjct: 833 GRCQVMKKHVTQLKTYANGTSDRINAGALDPDNKNHQAIGKDGIAQVGARIEAGDAYLLK 892 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + D+ ++ + + +K + + Sbjct: 893 SIPVDTAGPPSNTYKDKPEKYK--------NPDYSYIDKTCVTE----------NEAGVT 934 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 ++K+ RR + GDK + RHG KG I EDMP+++ G DI+ MN Sbjct: 935 LIKLLFRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPFNDQGICPDII---------MN 985 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 H + +G + E Sbjct: 986 ------PHGFPSRMTVGKMM---------------------------------------E 1000 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 ++ + G F G+ ++ ++L +G+ L G TGE + G Sbjct: 1001 LLSGKAGVLNGTLEYGTAFGGSTVEDMSKILVDKGFSYTGKDYLTSGITGEAHQFYTFFG 1060 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 +Y KL H+V DKMH+R+ G +++T+QP G+A+ GG R GEME L AYG Sbjct: 1061 PIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGGQM--- 1117 Query: 1289 EMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G + K + MP + +L++E+ S+ I + + E Sbjct: 1118 -----------GYSGYCKLCESEKAVRKITMPYAAKLLIQELGSMNIKVTIGLE 1160 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 94/752 (12%), Positives = 207/752 (27%), Gaps = 116/752 (15%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 R + P L L+ +DS+ F++ + + + RS + L Sbjct: 95 NTARDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKVNRFVRS-----DFDPKFLL 149 Query: 69 QYVSYRLGEP-------------VFDVQECQIRGVTYSAPLRVKL--------------- 100 +Y R+ P EC++R +TY+AP+ V + Sbjct: 150 EYTDIRVLAPNRQEEDDLDHHKSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIK 209 Query: 101 --RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFD 158 R+ I + MGE PL G F+ G E+VI+ Q + Sbjct: 210 IGRMPIMLKSNKCVLAGKNDNDMAVMGECPL-DPGGYFITRGQEKVILVQEQLNKNRVIV 268 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPATIILRALNY-T 216 + + K +++R + ++P +++AL + Sbjct: 269 ESAKGIMQASVTSSTHERRTK-----TYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVAS 323 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 ++IL + + + + E + +I + G R+ Sbjct: 324 DKEILTMVAGEDSAYQDNFSINFEACAKE--------EIFTQERALEYIGHRVRLVKKPL 375 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 + +E ++ V+ ++ + ++ +L + Sbjct: 376 GTSRNRNYHLEAIECLSNVVLPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDY 435 Query: 337 FTND-----LDHGPYISETLRVDPTNDRLSALVEIYRM-MRPGEPPTREAAESLFENLFF 390 N + E +D ++ ++ + +R E ++ Sbjct: 436 VGNKRLELSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKPVRAQEFDAFSHFSVHKNHITM 495 Query: 391 SEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN 450 +R + +K + LS + +M ++ +V Sbjct: 496 GVERAIATGNWSLKRFKMDRAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGP----- 550 Query: 451 RRIRSVGEMAENQFRV-------GLVRVERAVKERLSLGDLDTLMPQDM----------I 493 R + GLV+ + ++ D D + + + + Sbjct: 551 -RALQPSQFGMLCTSDTPEGEACGLVKNLALM-THITTEDDDDPVRKIVFMLGAQDICSL 608 Query: 494 NAKPISA-AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 + I A V + D+ P + R + +G +H Sbjct: 609 TGEDIHAEGVYSLCLNGTPIAVTDR--PKHFLNSFRGLRRMGRVSEFTS--------IHI 658 Query: 553 THYGRVCPIE--TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE 610 H C + T EG + + R + + Sbjct: 659 DH--DHCEVHIATDEG-------------RICRPMIIVENQRSKVTSRYLKALRKGTLDF 703 Query: 611 EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 E LD D + + + ++++ ++ A LIP+ Sbjct: 704 EDFLTRGLV-EYLDTNEE--NDTNIALKETDINQ----HTTHLEIEPFTILGAVAGLIPY 756 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 H+ + R M + +P+V T Sbjct: 757 PHHNQSPRNTYQCAMDTLLYLMVYPQQPMVKT 788 >UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S5S8_TRIAD Length = 1016 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 165/1002 (16%), Positives = 308/1002 (30%), Gaps = 212/1002 (21%) Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 +E L LS +G R +++ + D++ + Sbjct: 183 ILIQEQLSKNRMILEVDNKGNALSYIGSRVRQRKWGAKKLP---VDEARDLLANVV---- 235 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD--------- 485 + + +DD D+ GN+R+ G++ F + +K Sbjct: 236 LSHIPSILDDKDYYGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNIPKQRAGPVNMN 295 Query: 486 ----TLMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEITHKRRISALGP--- 535 + I+ + S MD+ ++ +SALG Sbjct: 296 LRFLEFDIVKYMRQDQITNGFNLALTTGNWSIKRYKMDRAGVTQVLSRLSYLSALGMMTR 355 Query: 536 --GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 + R R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 356 ISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSDD-KIIIN 414 Query: 594 VTDGVVTDEIHYLSAIEE--GNYVIAQANSNLDEE----GHFVEDLVTCRSKGESSLFSR 647 + + ++I+ LS E + I N + + R Sbjct: 415 LLFNLGVEDINLLSGEELSLPHIYIVYVNGYVLGAARNYKKLIRTFRLLRRD-----IKT 469 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 QV + ++ S+ P + N AL G + R ++++KPLV Sbjct: 470 AQVKRILYLIANYINEFVSIYPNHTYRQINIALDGGRVCRP-YIIVKSEKPLVTIKHIEE 528 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 ++ R G+++Y+D + N+ + E+ I+ Sbjct: 529 LSQGIRSFDDFIRNGLIEYLDVNEE----NDCNIALYESDIN------------------ 566 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 + L P T LG + +P+ +N + ++ Sbjct: 567 ----------SKTTHLDIEPFTILG-------VCAGLIPFPHHNQSPRNTYQCAMGKQAI 609 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 T +R + + + +P V + ++ Sbjct: 610 GTI----GYNQRNRIDTVLYQLVYPQVPLVKTKTIDLIEFD------------------- 646 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 ++P G + + + + G + + + Sbjct: 647 -------------------------------KLPAGQNAIIAVM---SYSGYDIEDAVIL 672 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + + D I + + + VE++++ + Sbjct: 673 NKASVDRGPQADAQTGKTIWKHKVLDADGICMPGEKVESKQILINKSIPSVTSTPIAGTG 732 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 Q L+ + D+ ++K L RR + GDK + Sbjct: 733 QKLLQPEYIDMPMTYRGPTDAYVENVMISSNNDE-----AFLIKTLLRSSRRPEIGDKFS 787 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 RHG KGV I EDMP+ D ++NP G P + +G Sbjct: 788 SRHGQKGVCGLIVNQEDMPFT------DQIMNPHGFP---------------SRMTVGKL 826 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 + EV+ +L G F Sbjct: 827 M---------------------------------------EVIGGKASLLDGKFRYGTAF 847 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 DG K ++ + L + +G+ L G TGE + G +Y +L H+V DKMHAR+ Sbjct: 848 DGDKLEDLCQTLIDYNYSYAGKDYLTSGITGEGLSAYIFFGPVYYQRLKHMVLDKMHARA 907 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK 1303 G +++T+QP G+++ GG R GEME L AYG + L E L + SD DV Sbjct: 908 KGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSMLLVERLMISSDAFEVDVCNNCG 967 Query: 1304 ------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 H +P + +L +E++S+ I L Sbjct: 968 LLAYSKWCHYCHSSCHVSSLQIPYACKLLFQELQSMNIIPRL 1009 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 151/1031 (14%), Positives = 276/1031 (26%), Gaps = 262/1031 (25%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 ++ + P L V L+ +DS+ FI + + Sbjct: 24 PVNKLEDKWKLVPAFLKVKGLVKQHIDSYNYFINCEIKKIVNANNKVT-----TDADTVF 78 Query: 67 ELQYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 L+Y++ +G P EC++R +TYSAP+ V + + Sbjct: 79 YLKYLNVYVGNPDIEESFNVTKPTYPHECRLRDLTYSAPIVVDIEYT--------RGAQR 130 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLY 172 I+ Q++ +G +P+M + V+NG V +++ + P G F K + L Sbjct: 131 IRRQKLPIGRVPVMLRSSICVLNGKSPVELAKYNECPIDPGGYFIVKGVEKVILIQEQLS 190 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRR--------RKLPATIILRALNYTTEQILDLF 224 R+I E D K N I R +KLP L + Sbjct: 191 KNRMI--------LEVDNKGNALSYIGSRVRQRKWGAKKLPVDEARDLLANVVLSHIPSI 242 Query: 225 FEKVIFEIRDN----KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD 280 + + + L+ E L + S K ++ ++R LE D Sbjct: 243 LDDKDYYGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNIPKQRAGPVNMNLRFLEFD 302 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 VK + + + A + L L+ LS G Sbjct: 303 IVKYMRQDQITNGFNLALTTGNWSIKRYKMDRAGVTQVLSRLSYLSALGM---------- 352 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 + I + + + Sbjct: 353 ----------------------MTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEA 390 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 + N +L+ S D ++ L ++ V+DI+ L + + Sbjct: 391 CGLVKNLALMTHITTDS------DDKIIINLLFNL-----GVEDINLLSGEELSLP-HIY 438 Query: 461 ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP---ISAAVKEFFGSSQLSQFMDQ 517 ++ R K+ + L + + I+ + EF +S + + Sbjct: 439 IVYVNGYVLGAARNYKKLIRTFRLLRRDIKTAQVKRILYLIANYINEF-----VSIYPNH 493 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 R+I+ G GRVC ++ S Sbjct: 494 T--------YRQINIALDG-------------------GRVCRPYI-------IVKSEKP 519 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 L R D + I YL EE + IA Sbjct: 520 LVTIKHIEELSQGIRSFDDFIRNGLIEYLDVNEENDCNIAL------------------- 560 Query: 638 SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK 697 + ++D+ ++ V A LIPF H+ + R M +QA+ Sbjct: 561 ----YESDINSKTTHLDIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAI------- 609 Query: 698 PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYT 757 G + Y +RI Sbjct: 610 ------------------------GTIGYNQRNRI------------------------- 620 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 + P V P+ + + + +L GQN +A M ++GY+ ED+++ Sbjct: 621 --DTVLYQLVYPQV----PLVKTKTI---DLIEFDKLPAGQNAIIAVMSYSGYDIEDAVI 671 Query: 818 VSERVVQED----RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 +++ V T I + LD GI Sbjct: 672 LNKASVDRGPQADAQTGKTIWKHKV--------------------------LDADGICMP 705 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 G +V IL+ K P + + D + V +V + Sbjct: 706 GEKVESKQILINKSIPSVTSTPIAGTGQKLLQ-----PEYIDMPMTYRGPTDAYVENVMI 760 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 + + + L + + K S Q GL + + P Sbjct: 761 SSNNDEAFLIKTLLRSSRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFTDQIM------NP 814 Query: 994 RDRWLELGLTD 1004 + + Sbjct: 815 HGFPSRMTVGK 825 >UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q27493_CAEEL Length = 1127 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 197/1237 (15%), Positives = 359/1237 (29%), Gaps = 283/1237 (22%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 +D + + I K+P + + +L + + Sbjct: 88 IDVHVNGSRLDIIEI-ILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSE 146 Query: 244 E---RLRGETASFDIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + L +F I K + EKG+ + +R ++++ ++ Sbjct: 147 KVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMM-----------T 195 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 Y+D T +L E+ L + ++ + + + + G + Sbjct: 196 LHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGR--------NQDQF 247 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSED------RYDLSAVGRMKFNRSLLRE 412 S ++ + + E +EAA + F D GR +L Sbjct: 248 YSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFIIRECVLIH 307 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 + + +KLI + G+ + D+ + G + R + + Sbjct: 308 LDSDEE--KFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENII 365 Query: 473 RAVKERLSL-GDLDTLMPQDMI--------NAKPISAAVKEFFGSSQL------------ 511 V+ +L + I+ + F + L Sbjct: 366 GMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQES 425 Query: 512 --SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 S ++ N L ++H R A+ G E +VR + P +G +CP+ TP+G Sbjct: 426 GFSVIAERINQLRFVSHFR---AIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPC 482 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVT--DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG 627 GL+N ++ + + + G+ T + L+ E Y + G Sbjct: 483 GLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELY-------PVLMNG 535 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 F+ +P + R L A + + Sbjct: 536 RFL-----------------------------------GYVPITKAASIERYLRCAKVAK 560 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM-YPGEA 746 A ++ LV + + G+ DA R++ V M Sbjct: 561 DARIPYTSEIALVRRSTDIK-------NIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHI 613 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 G + P V++ + + PS + N+ +P Sbjct: 614 GTFEQVYLSVVLDPE----EAEPGVTMHQEL--------HPSCLF---SFAGNL----IP 654 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 + +N + ++ ++ T +H ++ +L P + A K + Sbjct: 655 FPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQ----FPQQPMLKLEAYEKYE 710 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS-----SLRVP 921 + A+ D++D+ + Sbjct: 711 MD-------------------------EYPLGTNACVAVISYTGYDMEDAMTINKASYQR 745 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA 981 GTVI V+ L E + ++ EE++ + Sbjct: 746 GFAHGTVIKVERIN----------LVTERERKTIFYRNPREEIKTVGPDGLPIPGRRYF- 794 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 D + E + H E R + QG+ Sbjct: 795 ------------LDEVYYVTFNMETGDFR--------THKFHYAEPAYCGLVRIVEQGE- 833 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 K + ++R GDK A RHG KG+ S + P+E +P+ E G DI+ NP Sbjct: 834 -GDSGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPH 892 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 G PSRM IG I +M + A + D Sbjct: 893 GFPSRM---------------TIGMMIESMAGKAA----------------ATHGENYDA 921 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 S F E D ELL G Y G G Q Sbjct: 922 SPFVFNE-------------------DNTAINHFGELLTKAGYNYYGNETFYSGVDGRQM 962 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 E + G +Y +L H++ DK R+TG +T QP+ G+ + GG RFGEME A+ A+ Sbjct: 963 EMQIFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAH 1022 Query: 1282 GAAYTLQEMLTVKSD----DVNGRTKM--------------------------------Y 1305 G ++ LQ+ L SD R Sbjct: 1023 GTSFVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRC 1082 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P F L E+ ++ + I+L E Sbjct: 1083 RTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIE 1119 Score = 93.4 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 61/404 (15%), Positives = 129/404 (31%), Gaps = 72/404 (17%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD---- 81 + S +DSF + + + +A F +++ +++ S +L +P D Sbjct: 4 DIASYHVDSFDFLVSKGCQFAA--QAVPAEKFRLKNGD-AVTMKFTSAQLHKPTLDTGAK 60 Query: 82 ---------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 EC+ RG+TY+ L+V + + + E+ +G++P+M Sbjct: 61 LTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDII--------EIILGKVPIMLR 112 Query: 133 NG------------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 + F++NG+E+VI + F + KT Sbjct: 113 SEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRRN-FPIAIIRKTFKEK 171 Query: 169 KVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRRKL---PATIILRALNYTTE 218 L++ + R + + + + + RR++ P I++AL + Sbjct: 172 GKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKND 231 Query: 219 QILDLFFEKVIFEI------RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR 272 ++ F++ + N L E L E A I + +V V Sbjct: 232 AVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWED 291 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC--AANMELSLDLLAKLSQSGH 330 + + + + ++ K Y+ + L+ A + S SGH Sbjct: 292 DLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGH 351 Query: 331 KRIETLFTNDLDHGPYISETLR-----VDPTNDRLSALVEIYRM 369 + L + + L D + L + Sbjct: 352 ILLLILRERMENIIGMVRRKLEYMSSRKDFILTSAAILKALGNH 395 >UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 86 RepID=Q4A245_EHV86 Length = 1156 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 208/1396 (14%), Positives = 410/1396 (29%), Gaps = 320/1396 (22%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQYVSY 73 + ++ ++ Q++S+ FIE + + + + S + + + + Sbjct: 10 WSVIGDYINSVSPVAHQIESYDHFIENQLPY---IISEGSDISYMHSSGKVSHHVHFTNP 66 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 + P + K ++ + +T + Sbjct: 67 SVNRPAIQESD------------------------------GFYKPITPHIARLRGLTYS 96 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 T V+V +H + ++ II Sbjct: 97 ST--------VVVDVIHDRINHTVSPPTL----INRKVFRNVIIAQ-------------- 130 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +P + + + + + ++ +++ F Sbjct: 131 ----------IPVMVRSKLCYLADVSE-----NDLSADAKKHECKVD--------PGGYF 167 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK-------VVAKDYIDEST 306 I N K + + + T K K + + + D S Sbjct: 168 IISGNEKTLIPQTKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMNINDISN 227 Query: 307 GELICAANMELS-------LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV--DPTN 357 GE+ L L I N I + N Sbjct: 228 GEVPVITCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQN 287 Query: 358 DRLSALVEIYRMMRPGEPP--TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 A+++ + T+E+ E + + + + Sbjct: 288 YSRDAIMDWVGRNVTSDTTRATKESREKYID------------HIITSELAPHMGLVNNP 335 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG-----LVR 470 + I ++++L+ + G+ VDD D N+RI S G + R + Sbjct: 336 ETNKKKMIFIGHMIQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQG 395 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL----------------SQF 514 + +++++ T ++++ K I++ +K F + Q Sbjct: 396 LSTQLRKQVESPREATFNVGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQI 455 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 + + ++ + R+I+ + RE R +HP+ +G VC +TPEG GL+++ Sbjct: 456 LPRLTTMATLGASRKINT----PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSN 511 Query: 575 LSVYAQTNEYGFLE-------TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG 627 L++ + ++ T + T Y+ N I +D+ Sbjct: 512 LAITTRIRIGAPMQPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIK 571 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 + + R G + + ++ V S +L+ L D + MQ Sbjct: 572 EIATQMRSLRRHGNLPFDCS--ISISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQN 629 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 AV P T R G+++Y+D++ + M Sbjct: 630 PAV------VPNKYT--------------RMLREGIIEYIDSAE------QTNMRVAIHH 663 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 DI ++ T I P + G + V+ +P+ Sbjct: 664 TDI-------EQDEYTHIEIHPALLTG-------------------------ICVSQIPF 691 Query: 808 NGYNFEDSILVSERVVQE--DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 +N I ++ +TT + R +G T P V L Sbjct: 692 CDHNQSPRIAYQAAQCKQAIGLYTTNFAE------RLDTVGHVLATPQKPLVTTRLEELL 745 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 S +V GA +V + G Q +I ++ + + + Sbjct: 746 GTS-VVRSGAV-----PIVAIMCYSGFNQDDSVLLNQSSI--DRGLFTSFAYHTIRDEEK 797 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 GT D++ F + +K+A ++ + G VL+ V Sbjct: 798 GTGADIERF-------ENPKNIPGCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVS 850 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 L P++ + + + + + P Sbjct: 851 MSLLQADPKEGEVR-----------------RDTKRDRSHVLRTDEPVVVDAVFLSKTPE 893 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 VKV R GDK + RHG KGV P D P +G DI++NP Sbjct: 894 GHGYVKVRTRAIRIPMVGDKFSARHGQKGVCGVTMPAADFPCTADGVAPDIIINP----- 948 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 H + IG + +L + Sbjct: 949 ----------HAIPSRMTIGMLMEMVLSKVA----------------------------- 969 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 +G F G I + L+ + G LY+G +GE E + Sbjct: 970 ----------CYEGETQDGTPFTGNNIELIADRLETHGMQRYGNEMLYNGMSGEMLESMI 1019 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 + Y +L H+V DK HAR+ G+ L+T+ P G+++ GG R GEME ++ ++GA Sbjct: 1020 FIAPCYYQRLKHMVVDKSHARNRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGD 1079 Query: 1286 TLQEMLTVKSDDV----NGRTK-----------------MYKNIVDGNHQMEPGMPESFN 1324 ++ L +SD + ++ G H +P S Sbjct: 1080 VAKDRLFEQSDIFECVACEKCGHFAREGTDDTSVKNSGMWCEHCKTGKHCTHTQLPYSMK 1139 Query: 1325 VLLKEIRSLGINIELE 1340 +L++E+ + I+ LE Sbjct: 1140 LLIQELAAAHISATLE 1155 >UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Stigeoclonium helveticum RepID=RPOB1_STIHE Length = 696 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 226/732 (30%), Positives = 361/732 (49%), Gaps = 57/732 (7%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGE 77 + +P + +Q SFQ+F+E GL PI + + E+ Y+L Sbjct: 4 EKYFIPDFVELQRRSFQRFLE------TGLIEELNKRNPITNSQKDLEILLYPEYYKLAP 57 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P ++ + + TYS L V +L K I + V +G+IPLM+ G FV Sbjct: 58 PRWNSLDAILLSKTYSCRLYVPAQLTN-------RKTKQIMFKWVQLGDIPLMSKRGHFV 110 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL---YNARIIPYRGSWLDFEFDPKDNL 194 +NG RVI++Q+ R PG++F + SS K L Y A I RG+WL D + + Sbjct: 111 VNGAARVIINQIVRGPGLYFSEIQYNVDSSKKTLVRRYAAEFISMRGTWLRLSIDKEKMI 170 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + + + K+P L + T + + + K + + L+ + + D Sbjct: 171 WAELKKTPKIPLVWFLLGMGLTEKILFQSLTQP--------KRLLYNYLDYLKIDNLAID 222 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 +++ + ++ +L ++K ++ ++ Sbjct: 223 VKSQNDAFAKRALLRELLLKSKLNSSNIKTLKNSKDFKP--------------------- 261 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 + L D+ +++ K N + + N L AL IY + + Sbjct: 262 LLLVNDIYSEMHSYKEKENRRYPLNSQNGDLADEKEKIPYYANSSLKALELIYSKITNTK 321 Query: 375 PPTREAAE-------SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 T + F + YDL GR+ N+ L L+ D++ Sbjct: 322 KITNLNKKFFAKQGQKWIFKKFMNPRTYDLGLHGRLSLNKKLSLSLPLSQRTLTMYDVLV 381 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTL 487 + L+ + G DDID+L NRR+R+ ++ + Q +GL+R+E+ ++ + + Sbjct: 382 ATEHLLRVEQGLLGTDDIDNLKNRRVRTSSDLIQMQIGIGLLRLEKNIRSKFTTIKG-VP 440 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 + KP++ A+KEFFG++ LSQFMD NPL+E+THKRR++ LGPGG++R+ A ++ Sbjct: 441 KINYFFSTKPLNGALKEFFGTNPLSQFMDMINPLAEMTHKRRLTTLGPGGVSRDTATMDI 500 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHY 605 R +HPTHYGR+CP+ETPEG N GL+N+L+ +A+ N G +ETP+ KV G V + Y Sbjct: 501 RGIHPTHYGRICPVETPEGKNAGLVNALTTFARVNPEGLIETPFYKVYKGQVQKKAGFFY 560 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 LSA +E +IA + NL + G + L+ R E + R+ VD+M VS Q++SV Sbjct: 561 LSAEKEEKAIIAAGDLNLSKTGFLPKGLIPVRKFDEFTKVLRNYVDFMSVSPLQMISVAT 620 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 SL+PFLEHDDANRALMGANMQRQAVP +R+++ +VGTG+E +A DSG AK GG+V Sbjct: 621 SLVPFLEHDDANRALMGANMQRQAVPLVRSEQAIVGTGIETRIASDSGHVIRAKAGGLVG 680 Query: 726 YVDASRIVIKVN 737 YV +I I Sbjct: 681 YVSGQKIRIYTF 692 >UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO2_MIMIV Length = 1196 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 189/1251 (15%), Positives = 376/1251 (30%), Gaps = 209/1251 (16%) Query: 149 LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR----KL 204 L + + D + S Y A + +D + + + + K+ Sbjct: 88 LENEENLLYPLDAIRKQISYSAKYTATV-TQWQDIVDIDTKKTETRIIGSPEKDVPIAKI 146 Query: 205 PATIILRALNYTTEQILD---LFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 P ++ + N T + ++ + I + ++ L E + I V Sbjct: 147 PIMVLSKYCNLTLRPDIAGKHCKYDAGGYFIVNGSEKVVLSVESM--------IPRKPVV 198 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 + ++ + ++R + +P G + +I + + + Sbjct: 199 FTQRDQNSLLYYVR--------VQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSI 250 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPY--------ISETLRVDPTNDRLSALVEIYRMMRPG 373 + G + E + + LD I P+ + AL + ++ Sbjct: 251 FTFIRALGIETDEDIVDSILDVKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKST 310 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS-LLREEIEGSGILSKDDIIDVMKKL 432 + T E E RY + + + E I I ++ KL Sbjct: 311 KTFTDTNPEVKAEQR----RRYLDKIMTQFVLPHITSGTGDPEIDKIYKAHYICYMIHKL 366 Query: 433 IDIRN-------GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 + DD D + N+RI G + F+ ++ + ++D Sbjct: 367 LKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNID 426 Query: 486 TLMPQDMI---NAKPISAAVKEFFGSSQ--------LSQFMDQNNPLSEITHKRRISALG 534 P ++I I +++ + LSQ +++ N L +++ RR+ + Sbjct: 427 DKKPPNIIPHIKPNSIEQGLRQALSTGNFGSQSRKGLSQMLNRMNHLHSLSYMRRV--IT 484 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEG-PNIGLINSLSVYAQTNEYGFLETPYRK 593 P R +H T YG +CP+E+PEG P GL+ ++++ + P + Sbjct: 485 PTVDASTMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAMMEGITINMNSQIPIIE 544 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQ 649 + + YV N N DL R +GE S Sbjct: 545 SYLIGKITTLESANKKRLHQYVKVFLNGNWLGVTRNIIKIHNDLRAMRFRGELSRMVGLV 604 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA 709 ++Y + + + G LI N+ M + + + + + E Sbjct: 605 LNY-KTAEFHIYTDGGRLIRPYLTVTDNKLNFKPEM----LDEVNSWEEFLAKFPEVIEY 659 Query: 710 VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 VD QY+ + ++ L K R+N+ Sbjct: 660 VDKEEEQNIMLAVFPQYIQDANRIMSKKPINSRDQ--------LNKINRTNR-------- 703 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL--VSERVVQEDR 827 R P LG + + +P+ +N + ++ Sbjct: 704 --YDDNVYVRYTHCEIHPCMILG-------LISSNIPFPDHNQSPRGIFQYNQARQAMGL 754 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 + + + + +T+ + E+ IV I + Sbjct: 755 YISDYRERTDISYILYHPQIPLVTSRASKYTGTHIFPAGENSIVAIASY----------- 803 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 + ++ S V + S + + + + Sbjct: 804 ---------------TGLMNQEDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSI 848 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + L ++++ V+ G V ++ P ++EK Sbjct: 849 FMKPDRNKVDNLRDANYDKLSEEGYAKVETVIRDGDVVIGVVNPKP-------TAREDEK 901 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 Q + + + ++ I+K+ + +R GDK + Sbjct: 902 QYKDASSIYKSLIPGAVDKVIT-----------EVNNDGYPIIKMRIRSERIPNVGDKFS 950 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 R G KG I DM + ++G DI++NP +P R IG Sbjct: 951 SRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKR---------------MTIGQL 995 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 I +L + V KG+ F Sbjct: 996 IECLLGKLCAV---------------------------------------KGVYGDATPF 1016 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 I + L G +Y+G G++ + +G Y +L +V DK H+R+ Sbjct: 1017 TSVDLNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSRA 1076 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFG-EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--- 1303 G L+T+Q G+++ GG R G EME AL A+G A L+E SD Sbjct: 1077 RGPTQLLTRQAPEGRSRDGGLRIGFEMERDALCAHGVAQFLKEKTVDNSDIYTCHVCDSC 1136 Query: 1304 -------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + + +P +F +LL+E+ S+ I ++ Sbjct: 1137 GQFAHKVPEKKYYTCTGCRNTTSISKIVIPYAFKLLLQELASINILGKIRT 1187 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 147/1122 (13%), Positives = 331/1122 (29%), Gaps = 160/1122 (14%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV------- 79 L+ +DSF +FIE+ S ++ L + + P Sbjct: 35 LVKHHIDSFNQFIEEIIPNILQGGDNVISEKATENKIIRYRLTFNDLGIKPPTLENEENL 94 Query: 80 FDVQECQIRGVTYSAPLRVKLR----LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG- 134 + + ++YSA + +V + + E + E++V + +IP+M + Sbjct: 95 LYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPEKDVPIAKIPIMVLSKY 154 Query: 135 --------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 F++NG+E+V++S P + +S + Sbjct: 155 CNLTLRPDIAGKHCKYDAGGYFIVNGSEKVVLSVESMIPRKPVVFTQRDQNSLLYYVRVQ 214 Query: 175 RIIPY----RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVI 229 I + +++ + I +++ +RAL T E I+D + Sbjct: 215 SIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIRALGIETDEDIVDSILD--- 271 Query: 230 FEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 ++ K + L+ + + + + T + + + Sbjct: 272 --VKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFTDTNPEVKAEQRRRYL 329 Query: 290 EYIAGKVVAKDYI----DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + I + V D ++ A + + L K G + +E D Sbjct: 330 DKIMTQFVLPHITSGTGDPEIDKIYKAHYICYMIHKLLKCYLRGAREVEEYRGCDDRDSM 389 Query: 346 YISET------LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSA 399 L L + ++ R ++ + S ++ A Sbjct: 390 VNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPPNIIPHIKPNSIEQGLRQA 449 Query: 400 VGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI--DIRNGKGEVDDIDHLGNRRIRSVG 457 + F + + ++ + M+++I + ++ HL N + S+ Sbjct: 450 LSTGNFGSQSRKGLSQMLNRMNHLHSLSYMRRVITPTVDASTMKMTSPRHLHNTQYGSMC 509 Query: 458 EMA--ENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 + E + + GLV+ ++ + + + + K + Q + Sbjct: 510 PLESPEGKPKTGLVKNMAMMEGITINMNSQIPIIESYLIGKITTLESANKKRLHQYVKVF 569 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS- 574 N L + +I R G + + +GL+ + Sbjct: 570 LNGNWLGVTRNIIKIHNDLRAMRFR---------------GELSRM-------VGLVLNY 607 Query: 575 -LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 + + + G L PY VTD + + LDE + E L Sbjct: 608 KTAEFHIYTDGGRLIRPYLTVTDNKLNFKPEM-----------------LDEVNSWEEFL 650 Query: 634 VTCRSKGESSLFSRDQV-DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ--RQAV 690 + +++ + M Q + + ++ + + Q + Sbjct: 651 --AKFPEVIEYVDKEEEQNIMLAVFPQYIQDANRI--------MSKKPINSRDQLNKINR 700 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 D V + + + D ++ + + G+ I Sbjct: 701 TNRYDDNVYVRYTHCEI----HPCMILGLISSNIPFPDHNQSPRGIFQYNQARQAMGLYI 756 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 + + T + Q+P V+ G + G+N VA + G Sbjct: 757 SDYRERTDISYILYHPQIPLVTSRASKYTGTHI----------FPAGENSIVAIASYTGL 806 Query: 811 -NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP------NVGEAALS 863 N EDS+++++ +Q+ +++ + + + P N+ +A Sbjct: 807 MNQEDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSIFMKPDRNKVDNLRDANYD 866 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 KL E G + + GD+++G V PK + ++ KD+S + Sbjct: 867 KLSEEGYAKVETVIRDGDVVIGVVNPKPTAREDEKQ-------------YKDASSIYKSL 913 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 + G V V + + E K S Q G + +L + Sbjct: 914 IPGAVDKVITEVNNDGYPIIKMRIRSERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKS 973 Query: 984 VEAEKLDKLPRDRWLELGLT--DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ--- 1038 + P + + E +L + Y + L A ++ Sbjct: 974 GLIPDIIINPNCMPKRMTIGQLIECLLGKLCAVKGVYGDATPFTSVDLNAINDELVAAGY 1033 Query: 1039 ----GDDLAPGVLKI---VKVYLA----VKRRIQPGDKMAGR 1069 + + G+ VK+++ + + GDK R Sbjct: 1034 EEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSR 1075 >UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Scenedesmus obliquus RepID=RPOB1_SCEOB Length = 726 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 222/736 (30%), Positives = 362/736 (49%), Gaps = 41/736 (5%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P L+ IQ F +E+ G+ PI + E+ + YRL +P + Sbjct: 8 IPDLVEIQRQGFFYLLEK------GIIEEISKRNPITCFEKQIEIFFYPQYYRLTKPFYS 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 +Q+ +Y + + ++L + K I + + + PLMT+ G F++NG+ Sbjct: 62 IQQAIFYKKSYVSKFYIPVQLT-------DRKTKRIFLKWILLAHFPLMTNRGHFLLNGS 114 Query: 142 ERVIVSQLHRSPGVFFDSD--------KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 RVI++QL RSPG++F + + S+ + A II +G+WL E D + Sbjct: 115 ARVIINQLVRSPGIYFRENMHEIFSNKWSEKPSTTFRRFYADIICLKGTWLRIECDKDFS 174 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEK----VIFEIRDNKLQMELVPERLRGE 249 ++ ++ + K+P L + + + IL+ ++ F K+Q + L+ Sbjct: 175 MWAKMKKGPKIPLLWFLLGMGLSEKYILNSVYKPMNLLQSFTKEMEKMQKSKSSKELKYP 234 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 S +A ++ + T R L+K++ K + K+ AK + Sbjct: 235 YISSTKQAWEQIQKLFKLKKTLRKFSFLKKNEEKPKTFIFGQSSTKIEAKVVFSD----- 289 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 A N + + S ++T F E + + T ++ Sbjct: 290 FAAFNNSVKRENTVFASNDDTFLVQTSFETKKKKNTRKKENFQKNKTQKTTKLSLQNKEK 349 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 + E F N F + YDL GR N+ L L+ D++ Sbjct: 350 RVASKLEAYELGRKWFANKFMNPRTYDLGKQGRWLINKKLGLTIPLEQTTLTALDVLTAT 409 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-------LG 482 L+ I +G E+DDIDHL N+R+R+ GE + F +GL+R+E++++ +L+ Sbjct: 410 DSLMKIEDGFFEIDDIDHLKNKRVRTAGEALQEIFSIGLIRLEKSIRLKLNGNGQQSFFQ 469 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 +++ +PI+ A +EFFG+ LSQFMDQ NPL+EITHKRR+S+LGPGG++R+ Sbjct: 470 KTSFFNFDSLMSTRPINGAFREFFGTHPLSQFMDQINPLAEITHKRRLSSLGPGGVSRDT 529 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 A +R +HP+HYGR+CPIETPEG N GL+NS++ Y++ + +G+LE+P+ KV G V Sbjct: 530 ATLAIRGIHPSHYGRICPIETPEGKNTGLVNSITTYSKISFHGYLESPFYKVYKGQVQRN 589 Query: 603 I--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 + YLS ++ ++ A + NL G + + R ++ M VS Q+ Sbjct: 590 LGVFYLSPDKDDHFQTATPDLNLTPLGFLPKKPIPVRIGKRFVRMKTHKLALMGVSPLQM 649 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 +SV S IPFLEHDDANRALMG+NMQRQAVP +R ++PL+GTG+E V DSG +AK Sbjct: 650 ISVATSFIPFLEHDDANRALMGSNMQRQAVPLIRPERPLIGTGLEARVVSDSGHAILAKT 709 Query: 721 GGVVQYVDASRIVIKV 736 G + Y S+I + Sbjct: 710 SGYIVYSSGSKIYLYT 725 >UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-terminal section n=3 Tax=Eukaryota RepID=RPOB1_CHLRE Length = 822 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 228/760 (30%), Positives = 367/760 (48%), Gaps = 98/760 (12%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGE 77 + + IQ +SF +E+ G+ F PI + E+ + Y+L Sbjct: 120 NKYLISDFVEIQRNSFFTLLEK------GIIEEFSKRNPITNSKKTMEIFFYPDYYQLTP 173 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P + + I+ +Y++ L + ++L + + IK + VY+G+IPLMT G F+ Sbjct: 174 PEYSPSQAIIKSKSYTSKLYIPVQLT-------DKSKNIIKLKWVYIGDIPLMTKRGHFI 226 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSS--------GKVLYNARIIPYRGSWLDFEFD 189 +NG RVIV+Q+ RSPG+++ + S+ Y A +I RG+WL E D Sbjct: 227 LNGCARVIVNQMVRSPGIYYQKKIYENFSNKWSEKPENTFTRYFADLICNRGTWLRIEMD 286 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG- 248 + ++ ++ R K+P L A+ T + +L + I ++ + + L Sbjct: 287 KYNKIWAQMKRVPKIPIMWFLIAVGLTDKIVLKTVMDSKILLYNLDEDPLNPRKKPLPYV 346 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 +T A + K + ++ K ++L E T Sbjct: 347 KTPPAAWSAIYNIVFAKKIKA-----QEKAKKMLELTEGNPSS-----------KSQTKN 390 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 A+ +L++ ++ + I+TL ++ Sbjct: 391 KTSASKKSKTLNVANTKGKTPAENIKTLSELIDLEKALFLKS------------------ 432 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 E N F + YDL VGR+ FNR L + L+ D++ Sbjct: 433 ----------EQGRKWIFNKFMNPRTYDLGKVGRVNFNRKLKLSISQDITTLTPQDLLAA 482 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG------ 482 LI + G E+DDIDHL NRR+R+ GE+ + Q VGLVR+E+ ++E+++ Sbjct: 483 TNNLILVSKGLRELDDIDHLKNRRVRTSGELIQIQIGVGLVRLEKTIREKMTYASGLSSL 542 Query: 483 ----------------------DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP 520 + L ++IN KP + A++EFFG+S LSQFMDQ NP Sbjct: 543 PSQKFAFRSSKQRNQSPVGDAENATQLTIGNLINTKPFNGALREFFGTSPLSQFMDQINP 602 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L+E+THKRR+S++GPGG+TR+ A +R +HP+HYGR+CP+ETPEG N GL+NSL+ YA+ Sbjct: 603 LAELTHKRRLSSMGPGGVTRDSATLAIRGIHPSHYGRICPVETPEGKNTGLVNSLTAYAR 662 Query: 581 TNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 N G++ETP+ +V G V + +++ SA +E + + E G + + R Sbjct: 663 VNAAGYIETPFYRVYKGQVQKKTGLYFFSAKQEEKIKLGAPDLYTSEIGFLPKASIPVRI 722 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + + SR+++ Y+ V+ Q++S+ SLIPF EHDDANRALMG+NMQRQAVP L+ +P Sbjct: 723 VEDFTKISRNEIQYVGVAPIQMISIATSLIPFFEHDDANRALMGSNMQRQAVPILKPQRP 782 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 +VGTG+E DSG AK G+V Y + I+I + Sbjct: 783 IVGTGLEARAVSDSGHVITAKSSGIVMYTSSKEIIIYSLQ 822 >UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RER1_PLAYO Length = 1470 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 213/1434 (14%), Positives = 441/1434 (30%), Gaps = 175/1434 (12%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI---------QSYSGNSELQYVSYRL 75 +L+ +D F FI + + + + + Sbjct: 87 KFLVQSHIDDFNSFINVYIKNMPETLPVIEFSPNLNKYSCLNYEKKPKERIKFYISDIII 146 Query: 76 GEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 PV C++ TY + V + + +I V G Sbjct: 147 KTPVIKNDNGNTRPNYPYLCKLACSTYEGEVLVVI---------NKQYKNEIVRTTVSTG 197 Query: 126 EIPLMTDNG------------------------TFVINGTERVIVSQLHRSPGVFFDSDK 161 IP+M + F+++G ++I + +++ Sbjct: 198 FIPIMVLSDLCNLKNLNKKELVQKGEDESILGGFFIVSGHLKIIRYVICPKYNAILLNEE 257 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 K H + + N+ I ++E++ ++ + + + L + + Sbjct: 258 NKVHINCLLSDNSVFINSLSYLNNYEYE-----YLSRFQGSFIRIAFNVLILCLSPIKKK 312 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD- 280 + K+ I++ E + +V+ + + ++ Sbjct: 313 SYIYNKIKLGIKNENAIK--YIENYINSIFLKNDINEKEVFDKYNLKYLGKYANTSRTIF 370 Query: 281 ---DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 D + + V+ + E IC +L +L+K ++L Sbjct: 371 RYYDGNNYKKGKNVVKYCVLPHLQSNSEKFETICLMFKQL---VLSKFKLINTVNKDSLE 427 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRM-MRPGEPPTREAAESLFENLFFSEDRYD 396 + + + + + + +Y + E + + ++ Sbjct: 428 YHSVTTCSGLLSNILKERILSCFYRMQMLYSRSLHRFLEKKYEGFKLNVKQIYLRYKEMI 487 Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 L + FN+ L L+ D ++ ++L + D N R+ + Sbjct: 488 LHELSEDHFNQIL----------LNNTDKLENNEELTSENDNMISK--RDSTKNLRLMFM 535 Query: 457 GE---MAEN---QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 E + N R R E + + + IS+ + S Sbjct: 536 NEKEKLFTNVDGYLREIFSD-SRLFIENTRTFGVASFAISYLFKTGNISSDYIHYQQKSG 594 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 D+ N L +T+ R A+ G ++ R + +G +CP+ TP+G G Sbjct: 595 WVILADEINNLRLLTNFR---AIHRGSFFQDVKVLSPRKLLGESWGFICPVHTPDGSPCG 651 Query: 571 LINSLSVYAQTNE-------YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 L+N LS Y + ++ +K+ V DE + + E + +S Sbjct: 652 LLNHLSQYCCIHNVASNEPHKFNIKMYLKKIGINVNLDETSGIHTVYENQTIPIIVDSVP 711 Query: 624 ------DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV-----GASLIPFLE 672 ++ V L ++ +L S ++ + S+ +I + Sbjct: 712 ITYISENDFKRTVYKLKYAKNHNLYNLKSHFEIIAHLNEQSLMDSITIHTCTGRIIRPIL 771 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV--AVDSGVTAVAKRGGVVQYVDAS 730 + + + V ++ + R + ++ V + Sbjct: 772 NLKMKCIEFISPGYQPYVSIAVNYDDILKNNLARKILKKKENMVNLNSINNTKNTKKMTL 831 Query: 731 RIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTD 790 + ++ + E + YN ++ R I M + ++ Sbjct: 832 KEQYHFYTNKKHNIEKEAENYNESEIVRKKNKNKILNMLENKKQYQFNEDEYISSSDYET 891 Query: 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI 850 E + ++ + + +I + E++ Q+ + + + Sbjct: 892 SSESDKYSDDNMSSTTYIDSDENLNIDIYEQIPQKFEYMELKQTSFLSFLASLTPFSDHN 951 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 + L + GI + K+ Q +G Sbjct: 952 QSPRNIYQCQMLKQ--TMGI----QSLNMFYTFTNKIYRIITPQFPLVVTRDYEFYG--- 1002 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 V N SGT V + G + + + + + + + ++++ Sbjct: 1003 ---------VDNFPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRTHIYKTEVIDLY 1053 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPR--DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKK 1028 + + V + R + +++ + Q + + L KK Sbjct: 1054 KKTNSPDFALGNNVRYTINSLPTKNNPREYKGRFLNKDGLPCINQKILENNPLYSYINKK 1113 Query: 1029 LE--AKRRKITQGDDL------APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 E T GD + ++ + L R GDK A RHG KGV+S++ Sbjct: 1114 NELTTYEVFKTHGDYYVDCVSNSQSNNQVAIIRLRTTRPPLVGDKFASRHGQKGVVSRLF 1173 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 P EDMP+ E+G D++ NP G+PSRM IG ++E+ G AA G +I+A ++ K Sbjct: 1174 PHEDMPFSESGIVPDVIFNPHGIPSRMTIGMLIESICGKAASIYGKRIDATPFRKYTKQK 1233 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 + G + ++ + +E ++ + +D K +LL Sbjct: 1234 S---FNNPWIDGCGAKGFLNKQDENADEKKTTIKSSTENSDTTEISYDE-KIDFFAKLLL 1289 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 G LY G G + + G +Y +L H+ DK R TG +T QPL Sbjct: 1290 NKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPVCHLTHQPLK 1349 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK------------- 1303 GK + GG R GEME L ++G ++ + E + SD V + Sbjct: 1350 GKKKHGGIRLGEMERDGLISHGCSFIINERFLMNSDGHECFVCPKCGLILSPILQYNCSG 1409 Query: 1304 ---------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + K+ +P LL E+ L I I L + Sbjct: 1410 KLMKGRSIGGNSKMAVCKSCNVSCKI--VYVPYVLRYLLNELVCLNITIRLNIQ 1461 >UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=C6LZ34_GIALA Length = 1239 Score = 472 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 196/1411 (13%), Positives = 405/1411 (28%), Gaps = 275/1411 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 + L + LDSF ++ + + + L+ Sbjct: 20 DRWRLIHSYLMTESITKHHLDSFNHLLDVTIPAIIKENPLL-----VVAKHPHFYLRIEK 74 Query: 73 YRLGEPVF----------------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 + + EC+ R +TY+AP+ + +R + + + Sbjct: 75 VDVKQVSHGSSKSPGSSTGGNVGLTPHECRQRNMTYAAPITIDVRCRASNKSSVQ----- 129 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLY 172 +++ +G IP+M + ++ R + P G F K+ + + Sbjct: 130 -YYKDICIGYIPIMLRSNRCILANKSRKQQAFFQECPDDPGGYFIVRGAEKSILLAEQIT 188 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 RI+ R + + E N R R + ++ F + Sbjct: 189 MNRIVLGRNTDGNIEVTVASNTTERKSR--------------------CAVLYKNKKFYL 228 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV---PV 289 NK + +P + F + + + +++ I + Sbjct: 229 IHNKFNKKPIPIVTIFKAMGFVNDVTVLSLIGTDQLFLDYMSLSVQECSNDKIYTQEQAL 288 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 +Y+A ++V + Y + + M + +S + + + ++ Sbjct: 289 KYLADRIVVRTYANTNVNFPTSPVAMTAKASI-----ESARDCLAHFVLSHIPVVERLNL 343 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 + SA + T + ++ S + N Sbjct: 344 QQVAQNIQPQTSASTASNTSVSTHTGTTATSVGGKSGSVSAMAKPAIGSGASVVASNTGS 403 Query: 410 LREEIEGSGIL---SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + + + ++++ I G + D D +GN++I + G++ E F Sbjct: 404 TAPPVNMARFNWLPKAVYLATMVRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDD 463 Query: 467 GLVRVERAVKERLSL---------GDLDTLMPQDMINAKPISAAVKEFFGSSQL------ 511 + + ++ + DL +++ I+ A + Sbjct: 464 AFKTLLAHMARKVDVILRSDKNRGTDLTNYDVVSLVDPSIITRAFNSAISTGNWKIERIG 523 Query: 512 ------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 SQ + + + +S + R+S+ + R ++ + G CP +TPE Sbjct: 524 VDRVGVSQVLSRLSYISTLGQVTRLSS----TFDKAMKSSGPRMLNFSQMGIFCPSDTPE 579 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL---SAIEEGNYVIAQANSN 622 G ++G++ +LS+ A+ ++ ++ K+ + +++ G + N Sbjct: 580 GESVGIVKNLSIMARISKDENADS-ISKLLMSIGVEDLASCWSGDTFSLGYGYMVFLNGT 638 Query: 623 LDEE------GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 + F+ L T R KG S L F +D+ Sbjct: 639 IKGVIAKDMLKGFIITLRTFRRKGYISY----------------------LTSFHFNDEH 676 Query: 677 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG--VTAVAKRGGVVQYVD---ASR 731 + + R P L + + + + + G V+Y+D A Sbjct: 677 QAVYINCDSGRACRPLLIVENGKLKLTLNDIELLVNNQKCFVDFIYEGKVEYLDVNEAKN 736 Query: 732 IVIKVNEDEMYPGEAGIDI--YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 I ++ ++ P +I Y L Y Sbjct: 737 AYIAMDTKDLTPQHTHCEIESYTLLGY--------------------------------- 763 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 V +P+ +N + ++ I + R Sbjct: 764 -----------VVGLIPYPHHNQSPRNCYQCSMGKQASG-AIAFNQFE---RFETAMFLL 808 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 P L + G V + E+ L+ Sbjct: 809 DYPQRPLTSTKILKLTGYERLPA-GQN--------ATVCVMSYSSFDIEDALILNRSAID 859 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEA 969 + S R + K + + + E +E Sbjct: 860 RGFGRCSIYRSVSAE----------LNSTGSKSVDGTKDVLLGPPKDHLKQYESYHAVED 909 Query: 970 GLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL 1029 + A L G + K R + + E L + + LK E Sbjct: 910 DGLCAVGAHLKTGDIVINK------GRHVTNIPGLSDGPEAAETLIKSPESLKSPLETIT 963 Query: 1030 EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 + +T +D ++KV RR + GDK + Sbjct: 964 YIDKVLVTTNND----GNLLIKVLTREPRRPEVGDKFS---------------------- 997 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 SR G K L Q Sbjct: 998 ---------------SR-----------------HGQKGVCGLIVSQSDLPFTSQGIVPD 1025 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF----DGAKEAEIKELLKLGDLP 1205 + ++ E++ + +G F D AE+ + L+ Sbjct: 1026 LIMNPHGYPSRMTVAKLLELLSNKSSCFRGEQTDGTCFRTKTDEEFIAELYDSLRAAGFS 1085 Query: 1206 TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 SG+ LY G TG+ + G +Y KL H+V DK+H+R TG +++T+QP G+ Sbjct: 1086 YSGKDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVH 1145 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--------------MYKNIVDG 1311 GG R GEME +YGA+ L E + SD+ G Sbjct: 1146 GGLRMGEMERDCAISYGASALLLERFMLSSDEFLAYVCEACGLFSYERNGALWCPTCQSG 1205 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ +P + ++++E+ S+G+ + ++ E Sbjct: 1206 KDVVKIRIPYAAKLMIQELISMGVLVRMQLE 1236 >UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=C5YHJ3_SORBI Length = 1251 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 193/1386 (13%), Positives = 379/1386 (27%), Gaps = 316/1386 (22%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGN--------SEL 68 L+S Q++S+ +F+ GL+ F S+ I Y + + + Sbjct: 117 SFFSATGLVSHQINSYNQFVSH------GLQDLFDSLGEITVEPDYDPSNKSGAWKHATI 170 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 ++ L EPVF V L L + + + Sbjct: 171 KFGRVELSEPVFMVD---------------NLDLEQQDLKFKPRH-----------ARLQ 204 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 MT + T +V + DK +GK + + Sbjct: 205 RMTYASRMNVEMTAQV------------YILDKSDKAKTGKDTHVH--------RREIMT 244 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 + K LP + Q D F+ Sbjct: 245 ETKQVSM------GLLPVMVKSNLCWLHKLQESDCQFDFG-------------------- 278 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI--EVPVEYIAGKVVAKDYIDEST 306 F I+ KV++ + +R +R ++ E I K+V + Sbjct: 279 --GYFLIKGTEKVFIAEEQRFLSRIWITDYPSWDASYLSQIKREKINIKLVPSKRNESCK 336 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS----- 361 I + + ++ + + LD I + Sbjct: 337 VITIYFMGTIIPIWVVFFALGVSSDKEAFDMIDILDCDASIVNIISSTIKESHEEFEGFR 396 Query: 362 ----ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 A + +++R + P +E+ + F Sbjct: 397 APGRACQYVDKLIRKSKFPPKESFDEYVCRYMFP----------------------SVNG 434 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 + ++K L+ +G + D+ D N+R+ ++ + + R E + + Sbjct: 435 VRSKALFLGYMVKCLLMAYSGNRKCDNKDDFRNKRLGLACQLLRRELWTHIKRAEWRMVK 494 Query: 478 RLSL---GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ------------FMDQNNPLS 522 + D + + ++A I+ + F + + + NPL Sbjct: 495 LMQRDLSNDGNLQDLRRYVDASIITNGLNRAFSTGSWRHPYLKARCSGVVATLRRTNPLQ 554 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++ R+ + A + R +P+ +G++C + TP+G G + +L Sbjct: 555 MMSDLRK----TRQWVAYSGAVGDARYPNPSFWGKLCFLSTPDGEKCGFVKNL--AVTAV 608 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 + P ++ +S + N +L +L Sbjct: 609 VSSVVRKPLIDTFVSCGMKKLDDISLQDISGKDRIFLNGSLLGVCADPHELTLRLRSLRR 668 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 S QV+ + + R P L + T Sbjct: 669 SKLIDPQVEIKRDK------------------HHKEVRVLCDPGRILRPLLVVENLRRIT 710 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 +V+ + + K RS+ Sbjct: 711 ----RPKDGLYSFQELIDQNIVELIGVEEEE--DIQCASGIRHLFSGE----KEDRSSGY 760 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 T P LG + +P+ ++ +L+ Sbjct: 761 THCELDPSFLLGLSC-------------------------SLIPFANHDNGKRVLMQAEK 795 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 + + I +R L + P +V G Sbjct: 796 ISQQ---AIGYSPTNSHTRLDTLSHQIFYPQRPLFKT----------VVSYGLGKAETAY 842 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 G+ + + + +I + + +DS + + + + + Sbjct: 843 SFGRKDDFNTPEYFNGQNAIVSINVHQGFNQEDSLVLNRASLERGMFRTLHLKSYKAQVE 902 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + + + + + K+D L + +G Sbjct: 903 NKEITRRLKHRESINFGKVQSKR---------------------GKVDSLDSEGLPYVGA 941 Query: 1003 TDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 + + + +++E + K +K + ++ DD + V L R Sbjct: 942 SLQSGDIVIGKVSESGEDHSAKLMHTEKGMVDKVVLSANDD----GVNFATVTLRQSRSP 997 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 GDK A HG KGV+ ++ E+ P+ G DIV+NP G P+R GQ+LE LG Sbjct: 998 CVGDKFASMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPHGFPTRQTPGQLLEAALGKG 1057 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 G A V + E + +A Sbjct: 1058 IAMGGKVRYATPFTTPTVDVITEQLHKAGFSRWGEE------------------------ 1093 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD 1240 V +G + + V +G + +L H+ + Sbjct: 1094 ----SVLNGQTGE--------------------------RMKSLVFMGPTFYQRLVHMAE 1123 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 DK+ R+TG VT+QP+ K +FGG +FGEME + A+GAA L E L SD Sbjct: 1124 DKVKFRNTGPVHPVTRQPVEDKKRFGGVKFGEMERDCMLAHGAAANLHERLFTLSDFSQM 1183 Query: 1301 RTK------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 + +P +L +E+ +GI Sbjct: 1184 HICQACQRVANVIMRPAEGGSKKVHGPYCMFCRSAERIVRVNVPYGSKLLYQELFCMGIC 1243 Query: 1337 IELEDE 1342 ++ + E Sbjct: 1244 LKFDTE 1249 >UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RNV9_RICCO Length = 1203 Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 190/1372 (13%), Positives = 379/1372 (27%), Gaps = 274/1372 (19%) Query: 13 KDFGKRPQ--VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 KDF + + L+S Q++S+ FI G++ AF S + Sbjct: 60 KDFCNKAATLFFNEYGLISHQINSYNDFI------NNGIQKAFDSFGEL----------- 102 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 + EP +D + Y++ K+ L + K + + M Sbjct: 103 ----VVEPGYDPSKKGENEWRYASVKFGKVALEKPTFWSGADEHKMLPRH----ARLQNM 154 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 T + +N + V ++ RS +GK Y +D E Sbjct: 155 TYSSKMKVNVSVEVYTRKVVRS----------DKFKTGKDQY-----------VDKEVLN 193 Query: 191 KDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 DN + I LP + T + D F+ + + ++ + E++ + Sbjct: 194 TDNRNITIGS---LPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQEQICLKR 250 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 V + + +R + ++ ++ + + ++ + L Sbjct: 251 LWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEIPL---WILF 307 Query: 311 CAANMELSLDLLAKLSQSGHKR--IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 A + +++ + + + F + D + + AL + R Sbjct: 308 FALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADE------KTEGFRRGKEALEYVVR 361 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 +R P E + L S + + Sbjct: 362 QIRGTRFPPGENEDFFL-----------------------LYLFPTLHSLRQKARFLGYM 398 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG---DLD 485 +K L+ NG+ + ++ D N+R E+ E + +V + R + + L D D Sbjct: 399 VKCLLQAYNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRD 458 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRRISA 532 + ++A ++ + F + S + + NPL + R+ Sbjct: 459 VRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRK--- 515 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 + + R HP+H+GRVC + TP+G N GL+ +L+ + + P Sbjct: 516 -TRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVN--ILEPLI 572 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 +++ S + N V + QV+ Sbjct: 573 DKLIARGMEKVPEDSHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEI 632 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 QQ + ++ R P L A + Sbjct: 633 KRDEQQQ------------------EVRIFSDAGRILRPLLVVQN----LHKIEAFKGGN 670 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 G++++V + +G+D KYT + Sbjct: 671 CTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFL------ 724 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 + +P+ ++ +L + + I Sbjct: 725 -------------------------LGLSCGIIPFANHDHARRVLYQAQKHSQQ---AIG 756 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 R L + P L GD G + Sbjct: 757 FPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLG-----------KPGDT-RGHNGIVPK 804 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ 952 +L + + A+ + +DS + + + + + D + L + + Sbjct: 805 PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRK 864 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 +I +D L D + +G + + Sbjct: 865 YDDNVNFGKIPSKIGR--------------------VDSLDDDGFPFIGANLQSGDIVIG 904 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 + AE + H + K + Sbjct: 905 RCAESGPD--HSIKLKHTERGMVQKVVLSSNDEGKNFA---------------------- 940 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 V+S P + G K Sbjct: 941 --VVS--LRQVRSP----------------------------CLGDKFSSMHGQKGVLGF 968 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 + QE + + E G F Sbjct: 969 LESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTLSV 1028 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 I L G R+Y+GRTGE + +G + +L H+ +DK+ R+TG Sbjct: 1029 EAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVH 1088 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK----- 1303 +T+QP+ + +FGG +FGEME L A+GA+ L E L SD + + K Sbjct: 1089 PLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVANV 1148 Query: 1304 --------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + + ++ +P +L +E+ S+GI+++ E Sbjct: 1149 IQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLKFET 1200 >UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta RepID=A9TK27_PHYPA Length = 1238 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 202/1403 (14%), Positives = 412/1403 (29%), Gaps = 302/1403 (21%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 +E++ R K + L+ L SF +F+E + S I +S Sbjct: 70 SEEEVARSAVAKI--IFKGRSLVEHHLRSFNEFMEYGLPAMF---EEAGSFDCIPDHS-- 122 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 V+ + I EV +G Sbjct: 123 -------------------------------------VLVDSGIGVRKWARIVYGEVAVG 145 Query: 126 EIPLMTDNGTFVINGTERVI--VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW 183 + TF G + V+ + R + + + LY + R Sbjct: 146 K-----PYTTFTREGVKEVVDLLPHEARLRNLSYSAH----------LYVNMTLEVRSQG 190 Query: 184 LDFEFDPKDNLFVRIDR--RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 +P+D + + D K+P + + D + Sbjct: 191 NKKTQNPEDMIETKTDTICVGKVPVMVNSSFCHLHGLSEKDSVAKGHCSFDDGG------ 244 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 F I+ + KV + + + K I + + Sbjct: 245 ----------FFIIKGSEKVLIAQEEKAHQSIYVSYLKRTDTWIATY--SPTWRGFNSNQ 292 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR-- 359 ++ + + L + + E++ D T+ R Sbjct: 293 MNRGKTFVKLRMRKKAELLVGVPGLTEPVPLVILFRALGTSSDKEFLESICYDSTDSRFH 352 Query: 360 ----------LSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 L E + G + + + F + V ++ + Sbjct: 353 DLLLSSIWDADLILEEFQSRISYPAGASAIKSVRDQILSVRFLGTKLRNSRHVPSVEAGK 412 Query: 408 SLLREEIEGSG---ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 +++ + + + ++ +L G+ DD DH N+R+ G++ +QF Sbjct: 413 TIIGQLFVHTEGGYTRKAMLLGYMVNQLCSTFLGRRLEDDKDHFKNKRLDLTGQLLSHQF 472 Query: 465 RVGLVRVERAVKERLS---LGDLDTLMPQDMINAKPISAAVKEFFGSSQL---------- 511 R + +ER VK RL + D + + ++ ++ F Sbjct: 473 RKAMAHLERDVKRRLHPYLVKGRDLAPLKTYVTEAIVTKQMQSAFTLGNWNTNEGLKSSG 532 Query: 512 -SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV-RDVHPTHYGRVCPIETPEGPNI 569 + + NP++ ++H R+ P + R + +++GR+CP +T +G Sbjct: 533 VVAVLKRMNPMATLSHLRQFRLNLPPP----MKPTDPARHPNYSYWGRICPTQTSDGAEC 588 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH- 628 GLI SL++ + E P V + ++ + N + Sbjct: 589 GLIKSLALTCVVSSD-TPEEPVLHVLSDCGMHSLEEITPLTISMAEKIFVNGRWVGIFYD 647 Query: 629 ------FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 V L R + +++ + Sbjct: 648 YNATLAIVATLRQLRREQ----LLHGEIEVARDP------------------KTKAVHIH 685 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 + R P L E+ +A+ + + +A + + + Sbjct: 686 TDAGRLLRPLLIVK--------EQKLAMSKQHLKTLRAMSKQESAEACW-NFLLEQQVVE 736 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 + L R + + P+ + LG Sbjct: 737 LLGTEEEEGALIALNRDD-----LERARKDPDAPLYTHSEIDVSYIFGLGA--------- 782 Query: 803 AFMPWNGYNFEDSILV-----SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV 857 + +P+ +N L ++ + +T+ R G + P V Sbjct: 783 SVIPFLDHNQASRNLYQAEKHCKQAM--GFYTS------NLSGRSDCSGHQLFYPQKPLV 834 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 L + E+T G + + + + +DS Sbjct: 835 TTRTWDYLKK-------PEITNGQVAIVSIQ-------------------CCGYNQEDSI 868 Query: 918 LRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + + G + T G E+ + + AK+ + L ++ F + Sbjct: 869 IMNRASIDRGLFRSMHFKTYRGEERHNVIEHFAKPSISIAKRSRNASLNKIDEDGFPHLG 928 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 L G + K L + + + + ++L + + + Sbjct: 929 DYLEKGDIIIGK---------LTAEMGNPKLADSSQRLRA---------HENGRVDQVLL 970 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + +D +I KV L RR Q GDK + HG KGVI + ED+P+ G DI Sbjct: 971 SSEED----GHRIAKVRLRCSRRPQAGDKFSSMHGQKGVIGAVLNQEDLPFTRQGVVPDI 1026 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 I+ H + +G + ++L + V ++ + Sbjct: 1027 ---------------IINPHALPNRQTVGQLLESLLGKLMAVRGTQQSV----------- 1060 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 P + + + L + G + +G Sbjct: 1061 ---------------------------APFQKQSATRKFMDQLHQSEYQRGGSESMTNGT 1093 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHAR-STGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 TG + +++G + +L+H+V+DK+ R S G +T+QP+ + GG +FGEME Sbjct: 1094 TGMRLNSLISIGATFYQRLDHMVEDKIKYRGSGGPVDALTRQPVKNRKNMGGVKFGEMER 1153 Query: 1276 WALEAYGAAYTLQEMLTVKSDD----VNGRT------------KMYKNIVDGNHQMEPGM 1319 + +GA+ TL+E + SD V + K G H ++ + Sbjct: 1154 DCMIGHGASVTLRERCFLLSDPYAMLVCSSCRRPSGHTDPSRRRFCKFCCTGKHVVQIQI 1213 Query: 1320 PESFNVLLKEIRSLGINIELEDE 1342 P S +L +E+ S+GI + LE + Sbjct: 1214 PYSCKLLWQELLSMGITLFLETK 1236 >UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenophorea RepID=Q23G41_TETTH Length = 1226 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 215/1401 (15%), Positives = 414/1401 (29%), Gaps = 285/1401 (20%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN--------- 65 + + L S Q+ S+ FIE P + R + + Sbjct: 31 WKIIDEYFKDNGLCSHQIKSYNHFIESLPLIMEDFKIEVRPTENYMNSNKKEQQIRSQTS 90 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 L + R P P + + + Q++Y Sbjct: 91 YTLTFDRPRKPLP----------------PQKFHMERTFGWGRRGQDAQSSSHAQKIY-- 132 Query: 126 EIPLM---TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 P+M +D FV E I QL R+ +++ + +S Sbjct: 133 --PMMARISDLDYFV----EIKIPVQLVRTIKHPDGTEQKELITSR-------------- 172 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL------DLFFEKVIFEIRDNK 236 D NL KLP + + E + + F++ + I Sbjct: 173 ------DKNQNLITLF----KLPVMVQSMYCSLAGENLEGRIKHGECQFDQGGYFIIKGS 222 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRI----TARHIRQLEKDDVKLIEVPVEYI 292 ++ + ER+ + + K+ R T + Y Sbjct: 223 EKVIIAQERMAFNFVYVFQQKDPKMPWIAEIRSIRDKTNAVQSKFALKLKLRDGEYQLYA 282 Query: 293 AGKVVAKDY--IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 K++ +D ++ E+ + L ++++ + + L Sbjct: 283 RCKLINEDIPIFVLLKALGCVESDKEMMERIFYNLKDPKNEQMMEMLRSSL--------- 333 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 L N++ AL+ I R ++ ++ + Y L +G Sbjct: 334 LLAQHCNNKREALIFIG--YRINATTNYRGSQEAMQSAEDTLKLYLLPHIG--------- 382 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 E I +++KL++ GK + DD DH G +R+ G + F+ L Sbjct: 383 --TQESDNDKKLFFIGYMIQKLLNAALGKTQEDDRDHYGKKRLDMAGALISQLFKERLRI 440 Query: 471 VERAVKERLSLGDLD--------TLMPQDMINAKPISAAVKEFFGSSQLSQFMD------ 516 ++ K+ L D + D+ + K IS ++ + Q D Sbjct: 441 FQKNAKKNLQQKINDISRDAQKSLNVIVDIFDHKLISDHIRLALATGNWGQTADGEVVKT 500 Query: 517 --------QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 + + ++H RR++A + R +H THYG +CP ETPEG Sbjct: 501 GVAQVLKRDTSLFATMSHMRRVNA----PMKSAAKLARPRQLHNTHYGLICPAETPEGQK 556 Query: 569 IGLINSLSVYAQTNEYGFLETPY---RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 IG++ +LS+ AQ + + ++ + + +I L + N N Sbjct: 557 IGMVKNLSLLAQVSLGLSSQDNLKIQEQLEEQINQFDILNLKLEKIPYQTKVFFNGNWIG 616 Query: 626 ----EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 ++ R + FS D ++ + G + P + Sbjct: 617 FTETPEQIIDVFKEIRRLQKIDGFSIV-RDIINKEIRIYTDQGRGMRPVFTVQEICEGKN 675 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 + + + + G ++ +D Sbjct: 676 RLKITKSKLYAILQQFEGKA-------------FQKLIDEGFIELLDVEE---------- 712 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 E + ++ + ++ P+ LG + Sbjct: 713 --EEGALIAVDINDFYHTD-----------DPRRTNLPFTHCEIHPAMILG-------VC 752 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 + +P+ +N + + + ++ R L I + Sbjct: 753 ASVIPFGHHNQGPRNTL--QSAMGKQAMGLNSTNFH--MRLDTLCHILYYPQIALASSKS 808 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L + I IG+ V T E+ ++ + R Sbjct: 809 LQYITAKDIP-IGSN--------AVVAIACFTGYNQEDSIIINQSAIDRGLFRSILYRTY 859 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA 981 ++ + + I K+ S L+ + Sbjct: 860 KTTE---------KKEHMGLNPVIEHIRFPDEKKTIIPASYSFLKLDYDGIIPPGTQVTG 910 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 V K+ +LP+ +KQ + L + E+ + L + Sbjct: 911 EDVLIGKVVELPKTEGS-------DKQYKDVSLGCRRSEIGYVDTVILSEDK-------- 955 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 + IVKV L R Q GDK A RHG KG ED+PY+ G ++V+NP Sbjct: 956 ---DGMYIVKVKLRSNRIPQIGDKFASRHGQKGTCGMTIRGEDLPYNIEGIIAELVINPH 1012 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 +PSRM IG ++E + G +A ++ + + + Sbjct: 1013 CIPSRMTIGHMIEGLNSKLSSLKGIWGDATPFSGIKLQDIASELHTYGYQRYGNEVLYN- 1071 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 P +G + Sbjct: 1072 -------------------------------------------PYTG----------MRL 1078 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + G + +L HLVDDKM++RS G + +QP G+++ GG RFGEME + A+ Sbjct: 1079 STQIYYGPTFYQRLRHLVDDKMYSRSRGPVVAIVRQPTHGRSRGGGLRFGEMERDCIIAH 1138 Query: 1282 GAAYTLQEMLTVKSD----DVNGRTKM------------YKNIVDGN----HQMEPGMPE 1321 G + L+E SD V R + G+ ++ +P Sbjct: 1139 GTSNFLKERTFGVSDQFRTHVCSRCGLFAKADVTNHKYDCTGCSQGDKKHYKIVQVYLPY 1198 Query: 1322 SFNVLLKEIRSLGINIELEDE 1342 + L++E+ ++ I ++ + Sbjct: 1199 AAKQLIQELMAMHIVPRIKVD 1219 >UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella natans RepID=Q3LW27_BIGNA Length = 1159 Score = 460 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 182/1223 (14%), Positives = 371/1223 (30%), Gaps = 223/1223 (18%) Query: 185 DFEFDPKDNLFVRIDRRRKLPATII----------LRALNYTTEQILDLFFEKVIFEIRD 234 + P + I K+ + L+ + + D Sbjct: 95 ELNISPNKSRLRNITYSSKVRIQVFDEITDKHDANLKKKVVNKSKKFIYIGKFPCMIKSD 154 Query: 235 NKLQMELVPERLRG-------ETASFDIEANGKVYVEKGRRITARH--IRQLEKDDVKLI 285 L E F I N KV V + R + + ++ +++ Sbjct: 155 TCYLNNFSEISLARNDECPFDEGGYFIINGNEKVLVAQERLVKNKVYIFSKIFDKKTRVM 214 Query: 286 EVPVEYIA-----GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 Y + G +V + + + + + + + L + + L Sbjct: 215 AQCRSYDSSLYNQGYMVYLKLVTDKSNNPNQCSEITVKIASLR----AEIPLVILLKFLG 270 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFF---SEDRYDL 397 + I ++ + +N + ++ + + T A + F + + D Sbjct: 271 FKNDKEIINSIFKNNSNSKKLNMLYN-SFLGVTKVQTISHALRYIVDRSFSKSNNKKLDP 329 Query: 398 SAVGRMKFNRSLLREEIE--GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRS 455 R ++ LL S I + +LI+ N + DD D N+R+ Sbjct: 330 EKTAREIIDKKLLPHMGTSINSRFRKGLFICYMAHRLINTLNEIEQPDDKDSYKNKRVDI 389 Query: 456 VGEMAENQFRVGLVRVERAVKERL--SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL-- 511 G + + F + R + VK +L + D +++ ++ ++ + + Sbjct: 390 SGHLFSSLFNNLIKRSIKDVKNQLLKKVKKSDATELEELFSSNILTNGFRYSLATGNWII 449 Query: 512 ----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 SQ +++ + LS I+H R+++ T ++R VH +++G VCP+ Sbjct: 450 DGMLDYKTGVSQVLNRMSYLSMISHLSRLNS----SYTSNGKILDIRRVHTSYWGIVCPV 505 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAI-------EEGNY 614 ETPEG G++ + + A ++ + ++ I + + Sbjct: 506 ETPEGQTCGIVKNFAFLAHVTNSHHIQKNIIQFLKKIMIKNSFTKPMIKTKKDKPDISIF 565 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 V N E ++ L+T R E F V + S + L Sbjct: 566 VNGSWIGNTFEYFSLMKYLITLRR-QEIIPFDVSIVFNEKNKRIFIWSDPGRIKRPLFVL 624 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 + + ++++ A + + + + +V+Y+D I Sbjct: 625 KNSNSFFNHSIEKIA----------------KKIKDNFHRWYFYIKNSIVEYLDTEEIE- 667 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + L Y + Q + + S+ LG Sbjct: 668 -------------NIVIKLNYYNNTELIVDQTQ-------IYKKMINFSEIHASSILG-- 705 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 + + +P++ +N S + + + I+ E + Sbjct: 706 -----VSASQVPFSQHNQ--SPRNTYQSSMGKQAIGINYSNFQLRYDTQINILESNQRPL 758 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 + KL G ++ + AI + + Sbjct: 759 VFT----IQKLCLRG-----------------------QEMPSGINTIMAILSYSGFNQE 791 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 DS + + V + ++ ++ I E + S L L+ + Sbjct: 792 DSLIINHSSVERGLFRTIIYKTFAERENTNVNGIIEKIELE---SKSSNLFGLDIDGTRK 848 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR 1034 I ++ V K KL G D + L + Sbjct: 849 IETLVNGDDVLISKTIKLT-------GKGDTKVNTIHSDLKLPLNSQG-----------V 890 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 + L G KI+KV + R GDK + HG KG+I +P Sbjct: 891 VDSIMYSLDEGGYKIIKVRIRSIREPVIGDKFSSLHGQKGIIGYSYRQSLLPTTATSVTP 950 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 D+++NP + + IG I ++ + Sbjct: 951 DLIMNPHAI---------------PSRMTIGHMIEMLMSKVSS----------------- 978 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 G F +I L + G ++ Sbjct: 979 ----------------------HSGKLGDATAFSEGNIGKIIGHLSKFGIHHFGLEKMIS 1016 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 G G+ ++ + VG +Y +L H+V DK +RS G Y ++T+QP+ GK + GG RFGEME Sbjct: 1017 GFNGDILQKSILVGPIYYQRLKHMVVDKFFSRSRGPYEILTRQPVEGKTREGGLRFGEME 1076 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTK---------------MYKNIVDGNHQMEPGM 1319 + ++G++ L+E L +SD + I + + Sbjct: 1077 RDCVLSHGSSLFLKERLMDESDKFRVHICEKSGLFCPANLKTQTFWSTIYHSKSICQIFI 1136 Query: 1320 PESFNVLLKEIRSLGINIELEDE 1342 P + +L +E+ ++ I L + Sbjct: 1137 PYACKLLFQELIAMCIAPRLVVK 1159 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 100/762 (13%), Positives = 242/762 (31%), Gaps = 120/762 (15%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE------GQYGLEAAFRSVFPIQS----- 61 + ++ Q+ SF FI ++ + ++ ++++ I + Sbjct: 8 RVLQLLTTFFRGNSIIKQQIISFNDFIRKESQHIIDKIPNLVIQISYKNSNKIVNRILLL 67 Query: 62 -----YSGNSELQYVSYRLGEPVFD-------VQECQIRGVTYSAPLRVKL--RLVIYER 107 Y L EP +D + ++R +TYS+ +R+++ + Sbjct: 68 KQLYTEKPRIIKTRELYNLVEPSYDEGELNISPNKSRLRNITYSSKVRIQVFDEITDKHD 127 Query: 108 EAPEGTVKDIKEQEVYMGEIPLM------------------------TDNGTFVINGTER 143 + V + ++ +Y+G+ P M + G F+ING E+ Sbjct: 128 ANLKKKVVNKSKKFIYIGKFPCMIKSDTCYLNNFSEISLARNDECPFDEGGYFIINGNEK 187 Query: 144 VIVSQLHRSPGVFFDSDKGKTHSSG-----KVLYNARIIPYRGSWLDFEFDPKDN----- 193 V+V+Q + K + + ++ +L D +N Sbjct: 188 VLVAQERLVKNKVYIFSKIFDKKTRVMAQCRSYDSSLYNQGYMVYLKLVTDKSNNPNQCS 247 Query: 194 -LFVRI-DRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 + V+I R ++P I+L+ L + ++I++ F+ + N L G T Sbjct: 248 EITVKIASLRAEIPLVILLKFLGFKNDKEIINSIFKNNSNSKKLNMLY-----NSFLGVT 302 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 I + V+ R + + ++L+ + + + + + + + Sbjct: 303 KVQTISHALRYIVD--RSFSKSNNKKLDPEKTAREIIDKKLLPHMGTSINSRFRKGLFIC 360 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 A+ ++ + + L ++ + + Sbjct: 361 YMAHRLINTLNEIEQPDDKDSYKNKRVDISGHLFSSLFNNLIK---RSIKDVKNQLLKKV 417 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMK 430 + + E E N+ + RY L +L + S +L++ + ++ Sbjct: 418 KKSDAT--ELEELFSSNILTNGFRYSL--ATGNWIIDGMLDYKTGVSQVLNRMSYLSMIS 473 Query: 431 KLIDIRNGKGEVDDIDHLGNRRIRSV------------GEMAENQFRVGL-------VRV 471 L + + L RR+ + G+ + Sbjct: 474 HLSRL--NSSYTSNGKILDIRRVHTSYWGIVCPVETPEGQTCGIVKNFAFLAHVTNSHHI 531 Query: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 ++ + + L + + MI K + F S + + + + + RR Sbjct: 532 QKNIIQFLKKIMIKNSFTKPMIKTKKDKPDISIFVNGSWIGNTFEYFSLMKYLITLRR-- 589 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 +E F+V V R+ P G I ++ N F Sbjct: 590 --------QEIIPFDVSIVFNEKNKRIFIWSDP-----GRIKR-PLFVLKNSNSFFNHSI 635 Query: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS---LFSRD 648 K+ + + + N ++ ++ +E + V L + + Sbjct: 636 EKIAKKIKDNFHRWY--FYIKNSIVEYLDT--EEIENIVIKLNYYNNTELIVDQTQIYKK 691 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 +++ ++ ++ V AS +PF +H+ + R ++M +QA+ Sbjct: 692 MINFSEIHASSILGVSASQVPFSQHNQSPRNTYQSSMGKQAI 733 >UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Tax=cellular organisms RepID=RPOB_PSEAK Length = 2178 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 219/721 (30%), Positives = 348/721 (48%), Gaps = 77/721 (10%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGE 77 +P L+IQ SF++F++ GL F++ I + + E+ + Y+L Sbjct: 61 SQFKIPDFLNIQRSSFRQFLKS------GLITEFKNCKSITNSNQTFEVFFYAEHYKLNR 114 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P + ++ ++ +YS+ L + ++L Y+ E ++ Q V + +PLMT NG F+ Sbjct: 115 PKWTPKQAILKKKSYSSQLYLPIQLSNYQTE-------EVHLQWVLLANLPLMTKNGHFI 167 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD-PKDNLFV 196 +NG RV+++Q+ RSPGV+F K + K +Y+A I RGSWL E D K +++ Sbjct: 168 LNGCPRVLMNQIVRSPGVYF----RKVVKNQKTVYSADFIAQRGSWLRLEVDTKKGDIWA 223 Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 ++ + K+P LRAL T I + L + + F Sbjct: 224 KLKKTPKIPIFTFLRALGLTLP-----ILNNSIDFAKLRYLLQFKEESKRSKKIKDFLGP 278 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 R + +++ K + Sbjct: 279 GINNSLDIVEFRSLLKSLKKYMKPKPAKKSSKKQKTKKIKKW------------------ 320 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 ++ + L ++Y + E Sbjct: 321 ------------------------------LTPFVCTTYFQSLLELCQKLYPQKKFLEL- 349 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 + A+ F + YDLS +GR K N+ L IL+ D++ L+D+ Sbjct: 350 DPKLAQKFLFRKFQNPRTYDLSILGREKINKKLGISIPLEKTILTSQDVLFACLFLMDLL 409 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 G DDID L NR+I+ GE+ + Q GL+R+E+ ++E+L D+ ++ + K Sbjct: 410 QGLVISDDIDDLKNRKIKPSGELIQTQLSTGLIRLEKIIREKLKQPKQDSDSFSNLFSVK 469 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 P++ A ++FFG++ LSQ MDQ N LSEITHKRR+S+LGPGG+ RE AG +R +HPTHYG Sbjct: 470 PLNQAFRDFFGTNPLSQLMDQTNALSEITHKRRLSSLGPGGINRETAGMAIRGIHPTHYG 529 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNY 614 R+CPIETPEG N GL+NS ++++ N F+ETP+ K+ G + + S+ +E N Sbjct: 530 RICPIETPEGQNAGLVNSFTIFSHLNTKSFIETPFYKMYKGFILKNKNPFLFSSDQERNL 589 Query: 615 VIAQANSNLDEEGHF-VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 V+A + + R E SR++++++ VS Q++S+ SLIPFLEH Sbjct: 590 VLAPGDIQTSLFHFLPPGVPIPSRQFKEFKRVSRNEINFIAVSPIQMISIATSLIPFLEH 649 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 +D NRALMG+NMQRQAVPT+R KP+VGTG+E V D G ++ G V YVD ++I+ Sbjct: 650 NDGNRALMGSNMQRQAVPTVRPSKPIVGTGLESRVISDVGHGLQVQKSGFVSYVDGNKII 709 Query: 734 I 734 I Sbjct: 710 I 710 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 198/656 (30%), Positives = 311/656 (47%), Gaps = 75/656 (11%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y L Y RSNQ+T + P V G+ VE+GD+LAD + GEL++GQN+ V ++PW GY Sbjct: 1515 YILNNYHRSNQDTYMIHRPLVQEGQWVEKGDILADSSVSVQGELSIGQNILVGYIPWEGY 1574 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 NFED++L+SER++ +D +T++HI+ RDT+ G E+IT IPN +D +GI Sbjct: 1575 NFEDAVLISERLIFDDLYTSLHIERYEVEIRDTQFGLEQITNQIPNEKGE-YDYIDSNGI 1633 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG V GDILVGK+ P G+ +LT E LL I ++ +D+SLRVP GV+G VI Sbjct: 1634 AKIGTWVKEGDILVGKIAPIGQKKLTAYENLLYDILNKEIPKTRDTSLRVPRGVTGRVIH 1693 Query: 931 VQV---FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS-RIRAVLVAGGVEA 986 V++ + G + A ++ + ++ K+ S E ++++ E Sbjct: 1694 VEIVETTKKKGNDSSIFAKSLKFPKKQKLKRVTSPEYWYPVNTKKDQKVQSFSFKNKSEK 1753 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 L + E + + + L ++ + + K++ + + + + Sbjct: 1754 LFLTPVQSYFNKEAKTKNPKLNSPFFYLNKRNPDFNLKRNKRIAKEMYFFNKNEKIKLST 1813 Query: 1047 LKIVKVYLAVKR---RIQP----------------------GDKM--AGRHGNKGVISKI 1079 L+ +K+ K+ + DK + NK S+ Sbjct: 1814 LQ-IKIKGLEKKEFSFPKILKARFSLLQKAQTANLKIEKFLDDKFWNNVNYSNKN-FSRN 1871 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE---------THLGMAAKGIGDKINA 1130 ++ + +G NPL + Q +E H+ +A K + Sbjct: 1872 GSQKENS-NADGLQF---YNPLKKTKTK-VLQPMEKTSFSGPQKVHIYLAEKRKLQIGDK 1926 Query: 1131 MLKQQQEVAKLREFIQRAYDLGADVRQKVDL-----------STFSDEEVMRLAENLRKG 1179 + + + + R +D+ + E + Sbjct: 1927 IAGRHGNKGIISNILPRQDMPYLSDGTPLDIVLNPLGVPSRMNVGQILECLLGMAGYYLK 1986 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPT----SGQIRLYD-----------GRTGEQFERP 1224 FD E L L +GQ L++ GRTG+ F++P Sbjct: 1987 QNFKIQPFDEIYGCEASRSLVYSKLYEARIKTGQDWLFNANHPGKTRLFDGRTGDCFKQP 2046 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 VTVG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWALE +GAA Sbjct: 2047 VTVGVAYILKLIHLVDDKIHARSTGPYSLVTQQPLRGRSKQGGQRVGEMEVWALEGFGAA 2106 Query: 1285 YTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 Y LQE+LT+KSDD+ GR ++ +I++ G+PESF VL++E++SL ++I + Sbjct: 2107 YILQEILTIKSDDLKGRNQVMNSILNNKPV-NFGLPESFKVLVRELQSLCLDIAIY 2161 >UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4N2L4_THEPA Length = 1235 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 201/1421 (14%), Positives = 399/1421 (28%), Gaps = 315/1421 (22%) Query: 29 SIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIR 88 ++SF FI+ ++ P+ L+ P Sbjct: 13 ESHVESFNTFIDHYSFNM------VNNIPPVYITYNADSLK----SFLNPKDTPY----- 57 Query: 89 GVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQ 148 VK+ ++ + P G+E + SQ Sbjct: 58 --------YVKVSIISLKIGYPTRP--------------------------GSECIGTSQ 83 Query: 149 LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATI 208 + Y A ++ G +F +++ + +P + Sbjct: 84 ----------KMYPRHAKISHTTYEAPLVVTFG----IKFFESESIITKEVPVGHIPIMV 129 Query: 209 ILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 N ++ + + F I+ N K+ + Sbjct: 130 RSNRCNLKGLSGEEMIKQGEDADE----------------PGGYFIIKGNEKMLRQLIVP 173 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE-STGELICAANMELSLDLLAK--L 325 + I + + + EY D + L N ++ + + Sbjct: 174 RSNYPIAFKSDSNSQKNVLFTEYSIFMRCQSDLDGTCVSNYLHLTINKRCMFRVIVRNSI 233 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE-IYRMMRPGEPPTREAAESL 384 + L + + L N ++ L I+ M +P + Sbjct: 234 VLVPLFLLLRALLPFLSEDEFKRKLLENCSNNQEMTVLYHRIFLDMVQCDPVLSD--IDF 291 Query: 385 FENLFFS---------EDRYDLSAVGRMKFNRSL---LREEIEGSGILSKDDIIDVMKKL 432 +N + +Y + L S + ++ + KL Sbjct: 292 IQNRYLYRLGKACWNQVSQYLHPGSTFEECAHHLIKYFVIIHAKSNLDKFRTLLFMFNKL 351 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLSLGD------- 483 +++ NG + + D + + G+ + L ++ L + + Sbjct: 352 VNLSNGNIQSESYDSFAFQELLLPGQSYSCILKESLYLSLTRIRTVYNLEINNFLNHLKG 411 Query: 484 --------------------------LDTLMPQDMINAKP------ISAAVKEFFGSSQ- 510 + ++ N I+ V F + Sbjct: 412 KRGFKRNYAGVGKLENLDQDLEEEMVRKFMNSVNLFNFAINKVAPEITKKVHHFLSTGNA 471 Query: 511 ------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + +D+ N +H R ++ G + + +VR + +G + Sbjct: 472 FNTHYELNQNTGFALVLDRINYHRFSSHLR---SVHRGNIFMKMRSTQVRKLLGETWGFI 528 Query: 559 CPIETPEGPNIGLINSLSVYAQTNE------YGFLETPYRKVTDGVVTDEIHYLSAIEEG 612 CP+ TP+G GL+ LS YA+ Y + K ++ + ++ + Sbjct: 529 CPVHTPDGAPCGLLLHLSQYAKPVTTPNKPSYLNSIKSFLKSQPLHISGSTNKVNGGNDR 588 Query: 613 NYVIAQAN----SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 ++ NL++ F + L T ++ + + + + V +S+ Sbjct: 589 IPLVVDGIPISYVNLEDVEEFYDKLKTSKNLEKFGMCRHFETCAIRDK----FGVFSSIY 644 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 R + + + E + + Sbjct: 645 IMTFPGRLVRPVRNIKDNQIELIGPITQLWSTIAINEYELNKSHNKLLDLQAN------- 697 Query: 729 ASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 M + + +L ++ P + ++ +L+ S Sbjct: 698 ---------PSAMNKVQVPKPLKSLKDNE-------LDNCPVLYEYVELDMCCILSLSAS 741 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 P++ +N + +++++ H Q + L Sbjct: 742 L---------------TPFSNHNQSPRNMYQCQMLKQSVGIPFHSQFYRSEVKTYVLTS- 785 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 P V K G + AI Sbjct: 786 ---LQRPLVATKEYEK-------------------------MGFQDYPTGVNCVVAIIAH 817 Query: 909 KASDVKDSSLRVPNGV-----SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 D++D+ + V + + +V + + KD Sbjct: 818 SGFDMEDAMILNKASVDRGLFNSFIYKSKVIDLNSQASSTKERGGTVEYFNNMDKDSKLI 877 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 ++ L+ R+ L + + K N + +Y E Sbjct: 878 VKKLDFDGLPRLGEKLTKN--------------SPFYRIEERGKNNIVNDKVVKYTEEPA 923 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLK--IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 ++ + +IT GD ++ LK + L V R GDK A RHG KG++S + P Sbjct: 924 IVDQITLVGKSEITVGDKISCPGLKHDRAIIKLRVLRSPIVGDKFASRHGQKGILSAVWP 983 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 EDMP+ ENG D++ NP G+PSRM IG+++E G A G ++ Q Sbjct: 984 TEDMPFLENGIVPDVIFNPHGLPSRMTIGKLIEGMAGKVASIYGKPQDSTCFQAYYS--- 1040 Query: 1142 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 + G + ++VD+ + L Sbjct: 1041 -----ENPENGDEEMEEVDV------------------------------VDYFGKSLIK 1065 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 G +Y G G + + + VG +Y +L H+V DK RSTG +T+QP+ G Sbjct: 1066 SGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVRSTGPVDTITKQPVKG 1125 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN-------------- 1307 + GG RFGEME AL A+G A LQ+ L SD Sbjct: 1126 RKNLGGIRFGEMERDALIAHGTANLLQDRLLHCSDAHMAYVCPKCGSILSPSISSLEANT 1185 Query: 1308 -------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + + +P + E+ ++ I I+L Sbjct: 1186 KRQVSICTICQVNCKLVTIPYVLRYVANELATMNIGIKLHL 1226 >UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWJ9_MONSK Length = 2108 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 281/988 (28%), Positives = 399/988 (40%), Gaps = 221/988 (22%) Query: 566 GPNIGLINSLSVYAQTNEYG--------FLETPYRKVTDGV-VTDEIHYLSAIEEGNYVI 616 G IGL + A + G ++ K D V I S+ E + Sbjct: 1006 GKEIGLSSFQMNKANPRKNGGGSEKLYSLEQSSLLKADDSFAVRQNISLFSSELEDEIYV 1065 Query: 617 AQANS---------NLDEEGHFVEDLVTCRSKGESSLFSRDQ---------VDYMDVSTQ 658 ++ + + R K E + + + Sbjct: 1066 CTGDTLNPCLLNTSKIVANTSLFPPVFPVRHKQEFLTINSTDALQFIQAPTKLFTGICPI 1125 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP + +K VGTG+E A DS +A Sbjct: 1126 QLISIATSLIPFLEHDDANRALMGSNMQRQAVPFMTPEKAFVGTGLELQAARDSSTLVLA 1185 Query: 719 KRGGVVQYVDASRIVIKVN-----------------------------------EDEMYP 743 G + +VD+ I +K E P Sbjct: 1186 DESGQILFVDSQSIKLKTEKHGRTFSELRSPPGTKGQRPQWGKLSLDLKDQSAHPIEFSP 1245 Query: 744 GEAG----IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 G I Y LT +T SNQ+TC+ Q P V +GE VE+G +LADG T GE+ALG+N Sbjct: 1246 ERGGFSKEISSYELTDFTPSNQSTCLKQRPAVEIGEWVEKGSLLADGSGTRDGEVALGKN 1305 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDR-------------------------------- 827 + +A+MPW GYNFED+I+++ER+V ED Sbjct: 1306 VLLAYMPWEGYNFEDAIVINERLVFEDIYTSVHVERFDVDVRNTKIIQVRNPENSFQLED 1365 Query: 828 ----------FTTIHIQEL-----ACVSRDTKL--GPEEITA--------------DIPN 856 F ++ E V+ T G E T ++P Sbjct: 1366 TLPENSILNIFRSLVPGEYLTRDLDIVTNKTSRNSGNENSTLKTSTKDSLEALESINLPP 1425 Query: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT-------------------- 896 L LD +GI+ G V GDIL+GK+ + L Sbjct: 1426 KLPPKLRHLDANGIIKPGTWVQEGDILLGKLQIGPKDNLNNFDIKAQNTPFAQKIQTLPF 1485 Query: 897 PEEKLLRAIFGEKASD---------------------------VKDSSLRVPNGVSGTVI 929 PE +LL AIF + K+S+L +I Sbjct: 1486 PEYRLLLAIFDLQNRTPDKTLPTQTSNLEGGKLWPTTFGEKLSEKESTLPSSQDKKEQII 1545 Query: 930 DVQVFTRDGVEKDK------RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 + + + E+ + + L +L A S Sbjct: 1546 GEKSLSSEEGERSPLSDLSAYKNTLPSQNFGSELTSGQDTLNLLAAEKSSNSGLFAHQIK 1605 Query: 984 VEAEKLDKLPRDRWLELGLTDE----EKQNQLEQLAEQYDEL--------------KHEF 1025 + K+ + R L+ + + + + Q + Sbjct: 1606 NTSFKVGIGVKGRVLDYVVDGRISIFDGRQKANQNLPPRGSRETPPGLWPSQREEREGRG 1665 Query: 1026 EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 + ++ K G+ V ++LA K+RIQ GDKM+GRHGNKG++S I P +DM Sbjct: 1666 GRTPFLEKHKTLIGEGFIQSAATSVSIFLAHKKRIQLGDKMSGRHGNKGIVSLILPPQDM 1725 Query: 1086 PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFI 1145 PY ++G PVD+VLNPLGVPSRMN+GQ+LET G++A M ++ +A + Sbjct: 1726 PYLQDGKPVDVVLNPLGVPSRMNVGQVLETLFGLSAFYSHKVYRIMPFDER-IAPSQSIE 1784 Query: 1146 QRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA------------KEA 1193 + A + ++ S + G+P Sbjct: 1785 KNTLQENASLSLSRPETSRSLVYGHLRKLKTKAGVPPKRAEISELGLQKGGYPRTLKSIK 1844 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 + +L L D G+ L+DGRTGE F +P VGY YM KL HLVDDK+HARSTG YSL Sbjct: 1845 KGSQLNWLFDPNNPGKTHLFDGRTGEIFYQPALVGYSYMFKLIHLVDDKIHARSTGPYSL 1904 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGN- 1312 VTQQPLGG+++ GGQR GEMEVWALE +G A LQE LTVKSD++ R +++ N Sbjct: 1905 VTQQPLGGRSKKGGQRLGEMEVWALEGFGTASILQEFLTVKSDEIYSRNNFLFHLMRRNW 1964 Query: 1313 HQMEPGMPESF-------NVLLKEIRSL 1333 +E ESF V +E+RSL Sbjct: 1965 ESLEKNENESFARDAIKARVAGEELRSL 1992 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 210/1095 (19%), Positives = 378/1095 (34%), Gaps = 232/1095 (21%) Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 + + E K I Y G+IPLMT+ G+F+ING RV+V+Q+ R P V+F K Sbjct: 350 MTNHFVERSTRQKKQIF--WFYFGDIPLMTERGSFIINGAPRVLVNQIIRCPSVYF---K 404 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDP-KDNLFVRIDRRRKLPATIILRALNY----T 216 K + Y A + GSWL E D + L+ RID+ + PA I+L L Y Sbjct: 405 VKLDQKNRRSYTASFLSEYGSWLRLETDRLSNRLWARIDKSPRFPADILLMGLGYVLDSE 464 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETA----SFDIEANGKV------YVEKG 266 + K F++ L + + + F+ + + Sbjct: 465 NLNSVKYGLSKNEFKLNAQTLSFGKENKVVINKNIVKNSIFETASTLNSTFPASPFTSLK 524 Query: 267 RRITARHIRQLEKDDV---------------------------------KLIEVPVEYIA 293 + +TA++I+ ++++ K + ++ A Sbjct: 525 KYLTAKYIQVYQENNNLPTRQHDEREVQRPPRNGGEGSVGRTPFLDWIGKGLSKGLQSTA 584 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE---------TLFTNDLDHG 344 G+ +++ + I L + A+L++ I+ Sbjct: 585 GEKQFAKLLNKVENKKISKEQNYLWSSVSARLAEPKISSIQSPRPVLSGSIGKKFSSTKN 644 Query: 345 PYISETLRVDPTNDRLS---------------ALVEIYRMMRPGEPPTREAAESLFENLF 389 T+ D T AL +++ PG + S F N F Sbjct: 645 FVFKNTVENDNTRTPRRTNAGSKSGITINTATALQALWKKCNPGRWTSALGCYSFFYNKF 704 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV------- 442 + RY + VGR++ N+ L R L+ +D++ L +++ + Sbjct: 705 LNPKRYSIGRVGRIRLNKRLRRNPECKIPTLTPEDVLLAFHYLTELKIADAKENTFSLEL 764 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRV----------ERAVKERLSLGDLDTLMPQDM 492 DDIDHL NRR+R GE+ +NQFR+ L R+ + ++ + PQ + Sbjct: 765 DDIDHLKNRRVRLPGEILQNQFRLALSRIPYSAIRLQDNKTNIRNEVLQQREKVQRPQGV 824 Query: 493 -------------------INAKPI-----------------------SAAVKEFFGSSQ 510 N I + ++E F + Q Sbjct: 825 PLEGRVGRSPPSGEAKKVEQNQNSIRKNFDSVSSSRSEDSVPPGIPAFQSTLRELFNTGQ 884 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 LSQ+MDQ NPL+EITHKRR+S+LGPGG+ R++AGF VR++HP+H+GR+CPIETPEG N G Sbjct: 885 LSQYMDQTNPLAEITHKRRLSSLGPGGVGRDQAGFAVREIHPSHFGRICPIETPEGQNAG 944 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH----------YLSAIEEGNYVIAQAN 620 L+ SL+ YA+ N+ GFL++P + + + + SA + + I Q N Sbjct: 945 LVGSLASYARINDDGFLQSPALPIENQKSRFPFNNNNFEGDWLGFNSASRKYSKYILQ-N 1003 Query: 621 SNLDEEG---HFVEDLVTCRSKG------------------------ESSLFSRDQVDYM 653 E G + ++ G SLFS + D + Sbjct: 1004 GPGKEIGLSSFQMNKANPRKNGGGSEKLYSLEQSSLLKADDSFAVRQNISLFSSELEDEI 1063 Query: 654 DVSTQQVVSVG----------ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 V T ++ SL P + + + N K G Sbjct: 1064 YVCTGDTLNPCLLNTSKIVANTSLFPPVFPVRHKQEFLTINSTDALQFIQAPTKLFTGIC 1123 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY---------NLT 754 + ++ ++ +++ + M L Sbjct: 1124 PIQ---------LISIATSLIPFLEHDDANRALMGSNMQRQAVPFMTPEKAFVGTGLELQ 1174 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL-----GQNMRVAFMPWNG 809 S+ ++ + + + + + EL GQ + + + Sbjct: 1175 AARDSSTLVLADESGQILFVD-SQSIKLKTEKHGRTFSELRSPPGTKGQRPQWGKLSLDL 1233 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 + + E + F + I + L + Sbjct: 1234 KDQSAHPI--EFSPERGGF-SKEISSYEL---------------TDFTPSNQSTCLKQRP 1275 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 V IG V G L+ + + ++ + +L A + + +D+ + ++ ++ Sbjct: 1276 AVEIGEWVEKGS-LLADGSGTRDGEVALGKNVLLAYMPWEGYNFEDAIV-----INERLV 1329 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 ++T VE+ + ++ + ++ + L I LV G L Sbjct: 1330 FEDIYTSVHVERFDVDVRNTKIIQVRNPENSFQLEDTLPENSILNIFRSLVPGEYLTRDL 1389 Query: 990 DKLPRDRWLELGLTD 1004 D + G + Sbjct: 1390 DIVTNKTSRNSGNEN 1404 >UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophyta RepID=A3BQ32_ORYSJ Length = 1257 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 187/1392 (13%), Positives = 385/1392 (27%), Gaps = 338/1392 (24%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGN--------SEL 68 L+S Q++S+ F+ GL+ F S+ + Y + + + Sbjct: 133 SFFRETRLVSHQINSYNDFVSH------GLQKMFDSLDEVTVEPDYDPSKKVGPWRHATI 186 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 ++ L EPVF V C + E + K + Q+ Sbjct: 187 KFGRVELEEPVFWVDNC------------------DLDVETLKLKPKHARLQK------- 221 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR-IIPYRGSWLDFE 187 MT + + T +V + K +G+ Y R I W+ Sbjct: 222 -MTYSSKMKVEMTVQV------------YSLHKSDKAKTGEDPYIQRKDIMKETKWVTI- 267 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 KLP + ++ + + ++ + E+ Sbjct: 268 --------------GKLPVM------------ESECEYDFGGYFLIKGMEKVFVAEEQRC 301 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 + + ++ Q+ ++ + + V KV+ ++ + Sbjct: 302 LSRIWINDSPTWEACYQR---------SQIRREKISIKPVQSNDGFRKVINLYFLGATIP 352 Query: 308 ELICAANMELSLDLLAKLSQSGHKR---IETLFTNDLDHGPYISETL-----RVDPTNDR 359 I L S K I + D IS T+ + + Sbjct: 353 IWIM----------FFALGVSSDKEAFDIIDIQECDASMANIISATITESHEQCEGFQRE 402 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A I +++R + P + + + F Sbjct: 403 GRASEYIDKLIRNTKFPPKGSFDEYIGRHMFP----------------------DVSGNR 440 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 + +++ L+ +G + D+ D N+R+ E+ + + V ++ ++ + + + Sbjct: 441 SKALFLGYMVRCLLLASSGNRKSDNRDDFRNKRLDLACELLQRELWVHIMHAQKRMVKVM 500 Query: 480 SL---GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSE 523 GD D + ++A ++ + F + + + NPL Sbjct: 501 QRHLSGDGDLQPLECYVHASIVTNGLNRAFSTGSWCHPFNKRERCSGIVATLRRTNPLQM 560 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ++ R+ + + R +P+++G++C + TP+G G + +L++ A + Sbjct: 561 MSDMRK----TRQWVAYAGKAGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAITAIVS- 615 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG----HFVEDLVTCRSK 639 P ++ L E N NL FV L + R + Sbjct: 616 -CLAREPSVDALVSCGMKKLDELLLQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRR 674 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 + + D + ++ R P L + Sbjct: 675 KQIDAQVEIKRD----------------------KQNKEVRIFSDPGRILRPLLIVENLR 712 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + ++ G + ++ M + + R Sbjct: 713 ---------------NIMNRKNGSYSF-----------QELMDQNIIELIGVEEEEDIRC 746 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 + PS LG + +P+ ++ IL+ Sbjct: 747 AYGIRHLFAG--DEEKNFSFYTHCELDPSFLLGLSC-------SIIPFANHDTAKRILMQ 797 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 + + I + R + P A L + Sbjct: 798 AEKISQQ---AIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKR----------- 843 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 D G + + + +I + + +DS + + + Q F Sbjct: 844 -DYTSGSKHDFARPEYFNGQNAIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKA 902 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + + + L+ G +D L D Sbjct: 903 LIENKEIT-----------------KRLKHKENINFGKTPSKKG----LVDSLDIDGLPY 941 Query: 1000 LGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 +G + + + ++++ + +K +K ++ ++ DD V L Sbjct: 942 IGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDD----GTNSAFVTLRQT 997 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R R G+K Sbjct: 998 RSP--------RIGDK-------------------------------------------- 1005 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 A G K QE + + E Sbjct: 1006 --FASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIAL 1063 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 G F I E L G + +GRTGE+ PV G + +L+H Sbjct: 1064 GGATRYATPFTSPSVEVITEQLHKAGFSRWGGESVINGRTGERAASPVFTGPTFYQRLHH 1123 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD- 1296 + +DK+ R+TG +T+QP+ + ++GG +FGEME L A+GAA L E L + SD Sbjct: 1124 MAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHERLFLLSDV 1183 Query: 1297 ---DVNGRTK-----------------------MYKNIVDGNHQMEPGMPESFNVLLKEI 1330 V R + + + +P +L +E+ Sbjct: 1184 SRLHVCRRCQRAAVVVSPAVAADGGGGRKVRGPYCRFCRSAEEVVRVSVPYGAKILYQEL 1243 Query: 1331 RSLGINIELEDE 1342 S+GI ++ + E Sbjct: 1244 FSMGICLKFDTE 1255 >UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative n=1 Tax=Schistosoma mansoni RepID=C4Q6P1_SCHMA Length = 1155 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 190/1227 (15%), Positives = 342/1227 (27%), Gaps = 268/1227 (21%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM---ELVPERLRGETASFDIEANGK 260 LP ++ RA N ++ + F+ + E V L ++ + + Sbjct: 100 LPIMVMSRACNLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRS 159 Query: 261 VYVEKGRRITAR--HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + ++G T +R + +D+ I + + G+ ++ + + + +S Sbjct: 160 TFKKRGHGYTEHAIVMRCVREDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRVS 219 Query: 319 L-DLLAKLSQSGHKRIETLFTN-DLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 L I LF + + I L+ D + + AL + + R Sbjct: 220 FKSLYKTFGNVRTCNISFLFLKFHIRNAMRILIRLKDDEYSSQTRALCYLGGLFR----- 274 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 DR G+ + + S + + ++KKL Sbjct: 275 ----------KRMNVPDRLSDEEAGKFLLSEYIAIH--LSSFLDKYHLLCFMIKKLHAFV 322 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI--- 493 +G + D+ + + + R ++ + VKE++ L + + Sbjct: 323 SGLCCEESNDNPMFQEVLLPSTLYLQVLRAKVLHLLANVKEQVLLKSRKQNVRISLSLFH 382 Query: 494 -----NAKPISAAVKEFFGSSQL-------------------SQFMDQNNPLSEITHKRR 529 A +S A+ + L S D N L R Sbjct: 383 QALLSRASEVSTAMVYMVSTGNLPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQFR- 441 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 A+ G E VR + P +G CP+ TP+G GL+N L+ ET Sbjct: 442 --AVHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLAE----PVEAVCET 495 Query: 590 PYRKVTDGVVT-DEIHYLSAIEEGNYVIA----QANSNLDEEGHFVEDLVTCRSKGESSL 644 P + V + + H L IE + Q + +G + L T +L Sbjct: 496 PKQSVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLSTLDEAKRLAL 555 Query: 645 FSR-DQVDYMDVSTQQVVSVGASLIPFLEHD-DANRALMGANMQRQAVPTLRADKPLVGT 702 R +VD ++ +L+P + + A R P P Sbjct: 556 ELRNSKVD--PNCKNIPHTMEITLVPSTDVGSQYPGLYLFAGGSRLLRPVKNLQCPKNSA 613 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 G + V G I V E+E+ RS Sbjct: 614 G--KDVIEWIGTFEQVYLN------------ISVKEEELSERS---------PIDRS--- 647 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 + P +P+ +N + ++ Sbjct: 648 -------------------HIEIAPENIFS-------FVAGLIPYPDFNQSPRNMYQCQM 681 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 ++ + + ++ +L T P V K D Sbjct: 682 AKQTMGHSCYTWRNRSDAKAYRL----FTPQSPLVRTKMYVKYDVD-------------- 723 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 + A+ S + VI+ + R Sbjct: 724 -----------HYPLGFNAIVAVM----------SYTGYDMEDAMVINKASYDRGLAGAC 762 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 E+ ++ + Q + L D + +G Sbjct: 763 IYKSEVIDLSSLSKSTSSNNPFQK----KRLVTSEYYFGEKPDKG----LDLDGFPPVGA 814 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 E + L + E K E + G + L + R+ Sbjct: 815 RLEPGVSWLYAY--THSETLQTNFIKYEGGEQIAYVDSISLNGSWSCATITLRLPRQPDI 872 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPY-DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK + RHG KG+ S + E+MP+ NG D++ NP G P+ Sbjct: 873 GDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGFPT---------------R 917 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G I + + A +D + F E Sbjct: 918 MTMGMMIEFLAGKSA----------------ALTGNLIDATPFQWSE------------- 948 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 D + ++L G + G TG Q E + VG +Y +L H+V D Sbjct: 949 ------DSPPYEDYCQILTDCGFNHWGTETMMSGSTGRQLEAQIYVGVVYYQRLRHMVAD 1002 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK-SDDV-- 1298 K R+ G + + +QP+ G+ GG R GEME L ++G ++LQ+ L D V Sbjct: 1003 KYQVRAEGRFDPILRQPIKGRKVGGGIRLGEMERDCLLSHGLVFSLQDRLVDSNCDKVKM 1062 Query: 1299 --NGRTK---------------------------------MYKNIVDGN----------- 1312 + + D + Sbjct: 1063 LACSKCGGLTHSDLARNITNTSVNQITSNNSSSFVPGTNRWCCRLCDSDSSDCVSRDRDN 1122 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIEL 1339 + SF L E+ L + L Sbjct: 1123 SLKYVKVSASFRYLTYELACLNVKTRL 1149 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 149/1056 (14%), Positives = 291/1056 (27%), Gaps = 217/1056 (20%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPV----- 79 L + SF F+++ GL + + P++ SG+ +++ + PV Sbjct: 4 LSRVHTGSFDFFVKE------GLSRLVKHLQPLEFNSGSDVVEFKIQFIEVAPPVDSDNR 57 Query: 80 ---FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN--- 133 EC+ G+TY L++ +R+ + +V G +P+M + Sbjct: 58 STLLYPSECRRSGLTYGGELKLSVRVSVNGSPLGVL--------DVPCGVLPIMVMSRAC 109 Query: 134 ---------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 G F+++G ERV+ + + + T Y Sbjct: 110 NLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRN-YPLAISRSTFKKRGHGY 168 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 I R D IL + F + + Sbjct: 169 TEHAIVMRCVREDETVS-------------------ILMLHWLVNGEPALAFIVEREQFL 209 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + + + + L + ++++ R R + +L+ D+ + Y+ Sbjct: 210 VPISIILRVSFKSLYKTFGNVRTCNISFLFLKFHIRNAMRILIRLKDDEYSSQTRALCYL 269 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G L + + R+ YI+ L Sbjct: 270 GG---------------------------LFRKRMNVPDRLSDEEAGKFLLSEYIAIHLS 302 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 D+ L + + + F + E+ D + +L + Sbjct: 303 --SFLDKYHLLCFMIKKLH------------AFVSGLCCEESNDNPMFQEVLLPSTLYLQ 348 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 ++ +K+ + +++ K N RI F L+ Sbjct: 349 V----LRAKVLHLLANVKEQVLLKSRK---------QNVRISLS------LFHQALLSRA 389 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 V + +P +SA + S+ LS D N L R A Sbjct: 390 SEVSTAMVYMVSTGNLPPS--CKSTLSAQLSG--QSTGLSVPADNVNFLRFAAQFR---A 442 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 + G E VR + P +G CP+ TP+G GL+N L+ ETP + Sbjct: 443 VHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLAE----PVEAVCETPKQ 498 Query: 593 KVTDGV-------------------VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 V + + E + +I ++ LDE +L Sbjct: 499 SVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLST-LDEAKRLALEL 557 Query: 634 VTCR---------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH--------DDA 676 + E +L V + + G+ L+ +++ Sbjct: 558 RNSKVDPNCKNIPHTMEITLVPSTDVG-SQYPGLYLFAGGSRLLRPVKNLQCPKNSAGKD 616 Query: 677 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 +G Q +++ ++ + ++R+ + + G++ Y D ++ + Sbjct: 617 VIEWIGTFEQVYLNISVKEEELSERSPIDRSHIEIAPENIFSFVAGLIPYPDFNQSPRNM 676 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796 + +M G Y RS+ P L D L Sbjct: 677 YQCQMAKQTMGHSCYT--WRNRSDAKAYRLFTPQSPLVRTKMYVKYDVDH-------YPL 727 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV--------SRDTKLGPE 848 G N VA M + GY+ ED++++++ + S + + Sbjct: 728 GFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNNPFQKK 787 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 + GE LD G +GA + G T E L Sbjct: 788 RLVTSEYYFGEKPDKGLDLDGFPPVGARLEPG--------VSWLYAYTHSETLQTNFI-- 837 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 + G + V + +G Q K S Q Sbjct: 838 ----------KYEGGEQ--IAYVDSISLNGSWSCATITLRLPRQPDIGDKYSSRHGQKGI 885 Query: 969 AGLFSRIRAVL-VAGGVEAEKLDKLPRDRWLELGLT 1003 L + + L P + + Sbjct: 886 NSLLIQCEEMPWSTTNGLIPDLIFNPHGFPTRMTMG 921 >UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 6 RepID=RPB2_IIV6 Length = 1193 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 187/1381 (13%), Positives = 411/1381 (29%), Gaps = 272/1381 (19%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLG 76 L+ QL++F FI D + + + + R Sbjct: 28 LLKDYFQTSGLVKHQLETFDHFIFHDIKTII---------------DDEASIIFNGKR-- 70 Query: 77 EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTF 136 + S+ ++ Y R+ E +K + V++ + P +T++ T Sbjct: 71 --------------SLSSQIKNGAVEEGYNRKESEKI--MLKFENVFVAK-PTITNDDT- 112 Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 ++ + K + ++ + + E +L V Sbjct: 113 --------------TVRPLYPAEARQKMITYDSFVFV--DVLEYVLRDEEEILVNKHLRV 156 Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 +I K+P + N + E + L G+ + Sbjct: 157 QIA---KIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYFIINGNERVLIGQLRNAYNR 213 Query: 257 AN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + + E + + + + I+ K K T +LI + Sbjct: 214 SICFRNKFSEPLTCDMRSMSEETGHSVLIQLRLNDSPISQKRNLKKLDKNGTIDLIISQT 273 Query: 315 MELSLD--LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 + L + +++ L ++ + Y+ + + + Sbjct: 274 KTPIPISFVFRVLKVATIDKLKFLIGDEEELDKYLIKIVEETSDGGIFDDMEIEISQEDD 333 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 E+ E F +D + V +++L ++ +L + I+ K Sbjct: 334 FNEENEESTEKKKITQFIEQDMFPHLGVSSTHEEKAILLGKMVRKLLLVNETSINANKFA 393 Query: 433 IDIRNGKGEV----------DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + + +D D+ N+R+ + G + FR+ R ++ +L Sbjct: 394 QRANDETNKTNKTNKMYYTQEDRDNYSNKRVETAGVLCFELFRMLYKRFIKSNINQLEKR 453 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFM-DQNNPLSEITHKRR 529 + + + I+ + F + +Q ++ + + ++ RR Sbjct: 454 NRVEMDV--ISKNAFITTGLHFSFSTGNWGVQKNNYIRTGVAQIPQNKVSFGAFFSYLRR 511 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 + +E ++R +HP+ CP ETPEG +G+ + S+ A+ + Sbjct: 512 FVI----PMGKEGKNTKIRQIHPSSIFFACPSETPEGQFVGITLNFSMLAEVSIRTSSVV 567 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGN-----YVIAQANSNL----DEEGHFVEDLVTCRSKG 640 + + + ++EE I N + + + D+ + K Sbjct: 568 IKEIIEASHQAFKHVHEISLEENKQFLSKLSIIFVNGGICGLTSKPQQLLSDVRDLKLKH 627 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + + + ++ R P L Sbjct: 628 CLKYDVSA----------------------VFIPELKEVHISSDAGRFIRPVLNLQS--- 662 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 ++ V G V Y DA I + I++ +L++Y Sbjct: 663 ---IKTNGNVMWNSFQNCLENGHVVYKDAYEIEQ---------SQIAINLQDLSRY---- 706 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 P V D + S LG + A +P+ + + Sbjct: 707 --------PTV--------YDSMEIHASCMLG-------VMAAQIPFAEHTQSPRLCYQS 743 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + ++ I S +T + + + A ++ Sbjct: 744 SMAKQAIGN---IPSHHVKSDNTTRVMDYVQRPLVTTQIAEMN----------------- 783 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGV 939 + A+ + +DS + + G V T Sbjct: 784 ----------RFNDFPNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYKTIIVE 833 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 E+ E M + ++ + L +V ++ D L + + Sbjct: 834 ERKIGVNEKICMPVASVRRMNNYS---LLEDNPESPYFGVVKVKSFVKRNDVL-VGKVIT 889 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 D +Q E + + + + K+ +A ++R Sbjct: 890 KISKDGTRQETDHSTIVSISEEGKV------------DRIIRTSKKGILMFKIVIAQQKR 937 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 + GDK KG + I DMP+ E+G+ D+++NP +PSRM I QI+ + +G Sbjct: 938 PEIGDKFCSAMAQKGTVGMILEEVDMPFMEDGSIPDMIINPHCLPSRMTINQIMASIMGK 997 Query: 1120 AAKGIGDKI-NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 + +A Q+ + K ++ I Sbjct: 998 TCCAKNETFGDASPFQESSLEKPQDKIHA------------------------------- 1026 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 + + L+ +G + G G++ + G +Y +L H+ Sbjct: 1027 ----------------LCKELEECGYNYNGTETMMCGWNGKKLRAEIFFGPVYYHRLTHM 1070 Query: 1239 VDDKMHARSTG--SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 V DK+ +R++ +T+QPL G+A GG R GEME + +G + L E + +SD Sbjct: 1071 VSDKIFSRASTNQKRHAITRQPLNGRANEGGLRIGEMEKDCMLVHGISKFLHEKMFDQSD 1130 Query: 1297 D---------------VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 V + + + +G ++ P + + +E+ ++G +E + Sbjct: 1131 KFIINLCVPCKSYFKVVKTQNGFFCSGCNGIDIVKFNCPFAAKLFFQELTAMGQKLEFKV 1190 Query: 1342 E 1342 + Sbjct: 1191 K 1191 >UniRef50_Q2I5U8 DNA-directed RNA polymerase (Fragment) n=7 Tax=Fungi RepID=Q2I5U8_9FUNG Length = 1080 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 138/821 (16%), Positives = 253/821 (30%), Gaps = 155/821 (18%) Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMPQDMINAKPISAAVKEFFGS 508 +R+ G + + FR ++ + V + L IN+ I+ ++ + Sbjct: 2 KRLDLAGPLLASLFRTFFQKLTKDVGRYFTNCLERSRPFNLNMAINSNTITNGLRYALAT 61 Query: 509 SQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 SQ +++ S ++H RR++ + RE + R +H TH+ Sbjct: 62 GNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNT----PIGREGKLAKPRQLHNTHW 117 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 G VCP ETPEG GL+ +L++ + + G P + T+ + +S G Sbjct: 118 GMVCPAETPEGQACGLVKNLALMSIISV-GSASEPIHEFLSEWTTENLEEISPSTIGPNT 176 Query: 616 IAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 N V+ L T R + D + L + Sbjct: 177 KVFVNGAWIGIHREPDSLVKTLKTLRRATDIDSEVSVVHDIREN----------ELRIYT 226 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 + R L N +Q V + + E A+ G+V+Y+D Sbjct: 227 DPGRICRPLFVVNENQQLV-LKKEHILKLSEEDEDAIWG----WEKLLINGIVEYLDTEE 281 Query: 732 IV---IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 I ++ D++ + R+ + G+ + P+ Sbjct: 282 EETVMISMSPDDLAEARGALIFDKSLDRDRTARLKAR------KPGDYCKTWTHCEIHPA 335 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 LG + + +P+ +N S + + + +++ R L Sbjct: 336 MILG-------ICASIIPFPDHNQ--SPRNTYQSAMGKQAMGVYLTNF--QLRMDTLANI 384 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 P V + L + + + AI Sbjct: 385 LYYPQKPLVTTRNMQYLRFRELPA-------------------------GQNAIVAIAAY 419 Query: 909 KASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK---KDLSEEL 964 + +DS + + + G + + EK ++EE + + K Sbjct: 420 SGYNQEDSLIMSQSAIDRGLFRSIYYRSYVDAEKKTGFTQLEEFERPTRETTLKLRQGSY 479 Query: 965 QILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE 1024 + LE F + + K LP D E + Q + Sbjct: 480 EKLEDDGFVAPGTRVNGDDIIIGKTAPLPMDHS--------ELGTRTTQTKKDVSTGLKS 531 Query: 1025 FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 E + T GD K VK+ + R Q GDK A RHG KG + ED Sbjct: 532 SENGIVDHVMVTTNGD-----GYKFVKIRVRSTRVPQIGDKFASRHGQKGTVGMTYRQED 586 Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MP+ G D+++NP +PSRM IG ++E LG + G + +A V ++ + Sbjct: 587 MPFTAEGLTPDLIINPHAIPSRMTIGHLVECLLGKVSSLTGSEGDATPFTDVTVQQISDL 646 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 ++ + Sbjct: 647 LRECGYQQRGFEVMYNG------------------------------------------- 663 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 +G+ + + +G Y +L H+VDDK+H Sbjct: 664 -HTGK----------KLSAQIFLGPTYYQRLKHMVDDKIHC 693 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 19/26 (73%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRF 1270 +RS G ++T+QP+ G+++ GG RF Sbjct: 1055 SRSRGPLQILTRQPVEGRSRDGGLRF 1080 >UniRef50_Q5RM00 DNA-directed RNA polymerase (Fragment) n=26 Tax=Fungi RepID=Q5RM00_9HOMO Length = 898 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 167/1028 (16%), Positives = 305/1028 (29%), Gaps = 190/1028 (18%) Query: 274 IRQLEKDDVKLIEVPVEYIAGK---VVAKDYIDESTGELICAANMELSLDLLAKLSQSGH 330 IR + K I + + + + + + + + L +S Sbjct: 3 IRSAVEQGGKTISQFQVKMYHRGQERASGSVMKATIPYIKVDIPIWVVFRALGVISDRDI 62 Query: 331 KRIETLFTNDLDHGPYISETLRVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLF 389 ND + + DR AL I T + Sbjct: 63 LEHICFDMNDSSMLEMLKPCIDDGFVIQDREVALDFIGNR----GTATGLNRDKRLRYAQ 118 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 + L + EGS ++ +L+ + E+DD DH G Sbjct: 119 EILQKEMLPHIS-----------MAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFG 167 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFG 507 +R+ G + FR+ ++ + V L I + ++ +K Sbjct: 168 KKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQKCVETHKEFNINMAIKTQTLTNGLKYSLA 227 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR + L RE + R +H TH Sbjct: 228 TGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRCNT----PLGREGKIAKPRQLHNTH 283 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G VCP ETPEG GL+ +L++ A + G + P + + + + N Sbjct: 284 WGMVCPAETPEGQACGLVKNLALMAVISV-GSVSGPVIDFLEEWGLETLEENTQST--NL 340 Query: 615 VIAQANSNLDEEGHF----VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 N V L T R + D + + G L P Sbjct: 341 TKVFVNGVWLGVCRDPLNMVNTLRTLRRMQDFDSEVSIVRDIREREIRIYSDAGRVLRPL 400 Query: 671 LEHDDANRALMGANM----------QRQAVPTLRADKPLVGTGMERAVAVDSG------- 713 +D L ++ +R VP +K V G E + G Sbjct: 401 FIVEDHKLKLKRQHLRWLQEKWRIEERPYVPREERNKEEVSEG-ETVADEEEGRPIMRDE 459 Query: 714 ----------VTAVAKRGGVVQYVDASRIV---IKVNEDEMYPGEAGIDIYNLTKYTRSN 760 + R GV++ +DA I + D++ L ++ Sbjct: 460 RRVKRKKKPFTWSSLIRDGVIELLDAEEEETVMICMTPDDLLESRLLRRG--LDPRAEAD 517 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 N + PS LG + + +P+ +N S + Sbjct: 518 ----FNPAARLKPLPIAHTWTHCEIHPSMILG-------ICASIIPFPDHNQ--SPRNTY 564 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + + I++ + R + P A+ L + Sbjct: 565 QSAMGKQAMGIYLTNF--LMRQDTMANILYYPQKPLATTRAMEYLKFRELPA-------- 614 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 + + AI + +DS + + + + ++ R ++ Sbjct: 615 -----------------GQNAIVAILCYSGYNQEDSVIMNQSSID-RGLFRSLYYRTYMD 656 Query: 941 KDKRALEIEEMQLKQAKKD-----LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 ++KR+ I + ++ +D LE + + K +P D Sbjct: 657 QEKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPPD 716 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 EE + ++ + ++ + +T + K VK+ + Sbjct: 717 S--------EELGQRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAE----GTKFVKIRVR 764 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 R Q GDK A RHG KG I EDMP+ G DI++NP +PSRM IG ++E Sbjct: 765 STRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVEC 824 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 L A +G++ +A V + ++ + Sbjct: 825 LLSKLATIVGNEGDATPFTDLTVDSVSSVLREKGYQSRGLEVM----------------- 867 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 G TG + + V +G Y +L Sbjct: 868 ------------------------------YHG-------HTGRKLQAQVYLGPTYYQRL 890 Query: 1236 NHLVDDKM 1243 H+VDDK+ Sbjct: 891 KHMVDDKI 898 >UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742EB4 Length = 487 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 215/488 (44%), Positives = 317/488 (64%), Gaps = 5/488 (1%) Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 +P L+ E + E + + + +++ I + G V +D Sbjct: 1 MPVFLKAVDFFHTNEEIMNEFFELKEVELSEFYSKYKDTELEEI--LRSRLEGSFVREDV 58 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 +DE TGE + A + + ++ K+ + +++ I+ L D T + Sbjct: 59 LDEETGEFVAEAEEIIDIPVIQKIIDAKVEKLSIWEVK--PEDRIIANALVHDSTKNSDE 116 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 A++E++R +RPG+ T ++A SL + +FF+ RYDL+ VGR K N+ L + +L+ Sbjct: 117 AVIEVFRKLRPGDLVTVDSARSLVKQMFFNPQRYDLADVGRYKVNKRLKLDVPADVIVLT 176 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 K+D++ ++ + ++ +G+G DDID+L NRR+R VGE+ Q + G++++ + V+E++++ Sbjct: 177 KEDVLQTIEYVKNLVSGEGFTDDIDNLSNRRVRGVGELLSIQIKGGMLKMSKMVREKMTI 236 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE 541 D+ TL PQ ++N KP++A + EFFGS QLSQFMDQ+NPLSE+THKRRISALGPGGL+R+ Sbjct: 237 QDITTLTPQSLLNTKPLNALILEFFGSGQLSQFMDQSNPLSELTHKRRISALGPGGLSRD 296 Query: 542 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV-T 600 RAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS Y + N+YGF+ETP+ K+ DG Sbjct: 297 RAGFEVRDVHNSHYGRICPIETPEGPNIGLIASLSTYGKVNKYGFIETPFVKINDGKADF 356 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 ++I YL+A EE IAQA++ +D++G+F+ D V CR E + +VD +DVS +Q+ Sbjct: 357 NDIRYLAADEEEGLFIAQADTPIDKDGNFLTDEVVCRYGDEIVHIDKSKVDILDVSPKQL 416 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 VSV A LIPFLEHDDANRALMG+NMQRQAVP L+ + P VGTG+ER VAVDSG +K Sbjct: 417 VSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPYVGTGLERKVAVDSGAVITSKA 476 Query: 721 GGVVQYVD 728 G V + Sbjct: 477 SGTVPLLH 484 >UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 Tax=Amniota RepID=RPA2_HUMAN Length = 1135 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 116/904 (12%), Positives = 245/904 (27%), Gaps = 107/904 (11%) Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL-DFEFDPKDNLFVRIDR-RRKLPAT 207 SP K + R YRG D + I + +P Sbjct: 81 VISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIM 140 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 + + N L E + + + +R + + Sbjct: 141 VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKT 200 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL---LAK 324 R V + V E+ A + + + L L L Sbjct: 201 RGPGYTQY-----GVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKA 255 Query: 325 LSQSGHKRIETLFTNDLDHGPYISETLR-------VDPTNDRLSALVEIYRMMRPGEPPT 377 L +I + ++ ++ + + + L + R Sbjct: 256 LVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFR------ 309 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 D Y FN+ + S + + +KL + Sbjct: 310 ---------VKLNVPDWYPNEQAAEFLFNQCICIH--LKSNTEKFYMLCLMTRKLFALAK 358 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK------ERLSLGDLDTLMPQD 491 G+ D+ D L N+ + + G++ + L ++K + + ++T Sbjct: 359 GECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMR 418 Query: 492 MINAKP-ISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISALGPG 536 + ++ + F + L D+ N + ++H R + G Sbjct: 419 IFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFR---CVHRG 475 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 + VR + P +G +CP+ TP+G GL+N L+ + + Sbjct: 476 ADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLC 535 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNL------DEEGHFVEDLVTCRSKGESSLFSRDQV 650 + I + + D + L + E + +V Sbjct: 536 NLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEV 595 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 + ++ + S+ L F R + + ++ + + E V Sbjct: 596 VLIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFA 653 Query: 711 DS-------GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 + ++ + + D ++ + + +M G + LT RS+ Sbjct: 654 GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL--LTYQDRSDNKL 711 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 Q P L P D +G N VA + + GY+ ED+++V++ Sbjct: 712 YRLQTPQSPLVRPSMYDYYDMDN-------YPIGTNAIVAVISYTGYDMEDAMIVNKASW 764 Query: 824 QEDRFTTIHIQELACVSRDT-KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 + + + K G + I L KLD+ G+ +IGA++ GD Sbjct: 765 ERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP 824 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD---GV 939 + + + + + + V +++V + D G Sbjct: 825 YYSYL---------------------NLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGK 863 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 K K S Q + + P Sbjct: 864 FKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSR 923 Query: 1000 LGLT 1003 + + Sbjct: 924 MTIG 927 Score = 342 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 105/491 (21%), Positives = 168/491 (34%), Gaps = 91/491 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA------SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 P Q + KL R + D D P G + V V + G + Sbjct: 698 FPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNY-PIGTNAIVA---VISYTGYDM 753 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---LDKLPRDRWL 998 + + + + + + ++ + + G++ L KL D Sbjct: 754 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLP 813 Query: 999 ELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +G + L E + K+ +D G K V + + V Sbjct: 814 FIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRV 873 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R GDK A RHG KG++S++ P EDMP+ E+G DI+ NP H Sbjct: 874 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNP---------------H 918 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + IG I +M + A D + F E Sbjct: 919 GFPSRMTIGMLIESMAGKSA----------------ALHGLCHDATPFIFSE-------- 954 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + + E+LK G RLY G +G + E + +G +Y +L Sbjct: 955 -----------ENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLR 1003 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK R+TG+ VT QP+GG+ GG RFGEME AL A+G ++ L + L SD Sbjct: 1004 HMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 1063 Query: 1297 ----DVNGRTKM----------------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 V + + +P F + E+ Sbjct: 1064 RSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAEL 1123 Query: 1331 RSLGINIELED 1341 ++ I ++L+ Sbjct: 1124 AAMNIKVKLDV 1134 Score = 97.3 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 75/256 (29%), Gaps = 63/256 (24%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVF- 80 + L ++SF GL A +++ P + + + + + P Sbjct: 35 LQELTRAHVESFNY------AVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVP 88 Query: 81 ----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 EC+ R TY L + + G K I +Q ++G +P+M Sbjct: 89 KGTICKEANVYPAECRGRRSTYRGKLTADINWAV------NGISKGIIKQ--FLGYVPIM 140 Query: 131 TDNG------------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKTHS 166 + F+ING E+VI + F + Sbjct: 141 VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRN-FPIAMIRPKWK 199 Query: 167 SGKVLYNARIIPYRGSW-------LDFEFDPKDNL---FVRIDRRRKLPATIILRAL-NY 215 + Y + ++ + + F+ LP L+AL ++ Sbjct: 200 TRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSF 259 Query: 216 TTEQILDLFFEKVIFE 231 + QI + + Sbjct: 260 SDYQIFQELIKGKEDD 275 >UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 Tax=Coelomata RepID=RPA2_MOUSE Length = 1135 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 130/1040 (12%), Positives = 270/1040 (25%), Gaps = 185/1040 (17%) Query: 14 DFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 +G P+ + L +DSF GL A +++ P E + Sbjct: 23 SYGIPPEQQKAALQDLTRAHVDSFNY------AALEGLSHAVQAIPP-------FEFAFK 69 Query: 72 SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 R+ + + I +P V + + + + Y G + T Sbjct: 70 DERI---SLTIVDAVI------SPPSVPKGTICKDLNVYPAECRG--RKSTYRGRL---T 115 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 + ++ +NG + I+ Q Sbjct: 116 ADISWAVNGVPKGIIKQFL----------------------------------------- 134 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETA 251 +P + + N L E + + + +R Sbjct: 135 ----------GYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIE 184 Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 V + R V + V E+ A + + + Sbjct: 185 PRRNFPVAMVRPKWKSRGLGYTQ-----FGVSMRCVREEHSAVNMNLHYVENGTVMLNFI 239 Query: 312 AANMELSLDL---LAKLSQSGHKRIETLFTNDLDHGPYISETLR-------VDPTNDRLS 361 L L L L +I + + ++ + + + Sbjct: 240 YRKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQ 299 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 L + R D Y N+ + S Sbjct: 300 VLNYLGECFR---------------VKLSLPDWYPNVEAAEFLLNQGICIH--LQSNTDK 342 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK----- 476 + +KL + G+ D+ D L N+ + S G++ + + ++K Sbjct: 343 FYLRCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDK 402 Query: 477 ----ERLSLGDLDTLMPQD------------MINAKPISAAVKEFFGSSQLSQFMDQNNP 520 +S+ + + + + S F S L D+ N Sbjct: 403 RAQKANVSINNENLMKIFSMGTELTRPFEYLLATGNLRSKTGLGFLEDSGLCVVADKLNF 462 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L ++H R + G + VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 463 LRYLSHFR---CVHRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCE 519 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL------DEEGHFVEDLV 634 + G+ + + + D + L Sbjct: 520 VVTKFGDTASIPALLCGLGVTGADTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLR 579 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 + E + +V + ++ + S+ L F R + + R+ + Sbjct: 580 RFKVLREKRIPPWMEVALIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLELGREELIGTM 637 Query: 695 ADKPLVGTGMERAVAVDS-------GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 + E V + ++ + + D ++ + + +M G Sbjct: 638 EQLFMNVAIFEDEVFGGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMG 697 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 + LT RS+ Q P L P D +G N VA + + Sbjct: 698 FPL--LTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDN-------YPIGTNAIVAVISY 748 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVS-RDTKLGPEEITADIPNVGEAALSKLD 866 GY+ ED+++V++ + + K G + + + + KLD Sbjct: 749 TGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLD 808 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 + G+ IGA++ GD + K + Sbjct: 809 DDGLPSIGAKLEYGDPYYSYLNLNTGEGFVVYYKSK---------------------ENC 847 Query: 927 TVIDVQVFTRDGVEKDKR---ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 V +++V + D + K S Q + Sbjct: 848 VVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTES 907 Query: 984 VEAEKLDKLPRDRWLELGLT 1003 + P + + Sbjct: 908 GMMPDILFNPHGFPSRMTIG 927 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 102/491 (20%), Positives = 168/491 (34%), Gaps = 91/491 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA------SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 P Q + KL R + D D P G + V V + G + Sbjct: 698 FPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNY-PIGTNAIVA---VISYTGYDM 753 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA--VLVA-GGVEAEKLDKLPRDRWL 998 + + + + + + ++ + ++ + + KL D Sbjct: 754 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLP 813 Query: 999 ELGLTDEEKQNQLEQLAEQYDE--LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +G E L E + + K+ +D+ G K + + + + Sbjct: 814 SIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRI 873 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R GDK A RHG KG++S++ P EDMP+ E+G DI+ NP H Sbjct: 874 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNP---------------H 918 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + IG I +M + A D + F E Sbjct: 919 GFPSRMTIGMLIESMAGKSA----------------ALHGLCHDATPFIFSE-------- 954 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + + E+LK G RLY G +G + E + +G +Y +L Sbjct: 955 -----------ENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLR 1003 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK R+TG+ VT QPLGG+ GG RFGEME AL A+G ++ L + L SD Sbjct: 1004 HMVSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 1063 Query: 1297 DVNGRTKM--------------------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 + + +P F + E+ Sbjct: 1064 RSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAEL 1123 Query: 1331 RSLGINIELED 1341 ++ I ++L+ Sbjct: 1124 AAMNIKVKLDV 1134 >UniRef50_A5H2B2 DNA-directed RNA polymerase (Fragment) n=3 Tax=Leotiomyceta RepID=A5H2B2_9LECA Length = 717 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 137/831 (16%), Positives = 248/831 (29%), Gaps = 144/831 (17%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMPQDMINAKPISA 500 DD DH G +R+ G + N FR ++ + V+ L + + + + I+ Sbjct: 1 DDRDHFGKKRLDLAGPLLANLFRTLFNKLNKDVERYLKNCIENNREFNLTLGVKSTHITN 60 Query: 501 AVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +K + SQ +++ S ++H RR + + R+ + Sbjct: 61 GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNT----PIGRDGKIAKP 116 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R +H TH+G VCP ETPEG GL+ +L++ + +E + + + Sbjct: 117 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVSVGAPIEGVVDFLFQRQ-MESLEEYD 175 Query: 608 AIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 + + N V + R K + D D + + Sbjct: 176 PLTSPHATKIFVNGVWVGVHRSPAALVNAVQDLRRKQVIAYEVSLVRDIRDREFKILTDQ 235 Query: 664 GASLIP-FLEHDDANRALMG-ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 G L P F+ +D + G + + + L +D+ + + + Sbjct: 236 GRVLRPLFVVENDPKSPICGDLVLNKGHIEKLESDRDIPLDIDKEERVKKTYGWHGLVNE 295 Query: 722 GVVQYVDASR-----IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 GVV+YVDA IV+ + + Y L + N + Sbjct: 296 GVVEYVDADEEETVMIVMTPYDLNVSRQVQA--GYALPEDNDDP-----NARVKAPINPT 348 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 PS LG + V+ +P+ +N S + + + + + Sbjct: 349 AHTWTHCEIHPSMILG-------VCVSIIPFPDHNQ--SPRNTYQSAMGKQAMGVFLTNY 399 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 R + P ++ L + Sbjct: 400 --DQRMETMAHILYYPQKPLATTRSMEFLKFRELPA------------------------ 433 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIE---EMQ 952 + + AI + +DS + + + G + E IE + Sbjct: 434 -GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSPFFRSYSDQEGRIGLNVIEQFEKPM 492 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 K + L+ A + + K + D ELG + ++ + Sbjct: 493 RSNTMKLKHGTYEKLDDDGLIIPGARVSGEDIIIGKTAPITADAE-ELGQGIKIRERRDA 551 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 + E K VKV + + Q GDK A RHG Sbjct: 552 STPLRSTESGLV-----------DQVALTTNAEGHKFVKVRMRTTKIPQIGDKFASRHGQ 600 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KG I EDMP+ G DI++NP +PSRM I ++E L + G + +A Sbjct: 601 KGTIGITYRQEDMPFTSEGLVPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATP 660 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 + V + ++ + G + VF Sbjct: 661 FTEVTVDSVSRLLREHGYQSRGFEVMYNG---------------HTGRKLVAQVF----- 700 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 +G Y +L H+VDDK+ Sbjct: 701 ----------------------------------LGPTYYQRLRHMVDDKI 717 >UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas americana RepID=O21237_RECAM Length = 1478 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 264/983 (26%), Positives = 440/983 (44%), Gaps = 82/983 (8%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 + +R F +++ +P LL I S+ F+++ L+ +S+ + Sbjct: 10 KKDLSLRLGFSSINEIVPIPNLLKISKSSYNNFLQRFVPYSKRLDVGIQSLLKKYFGN-- 67 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 ++ Y G + EC G+TYS PL V L++ + + ++ Y+G Sbjct: 68 ---SFICYSFGVSEKNPDECLENGLTYSIPLYVFLKVNMKDNVKDTI-------KKYYIG 117 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 EIPL+TD+G+F+ING E +++QL R GV+ + K K R + R LD Sbjct: 118 EIPLLTDSGSFIINGVENTVINQLVRDSGVYINKSKSPFI---KTSLKIRGLKGRSIQLD 174 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVPE 244 + +D + + +ID + + + + + + +++LD F + Sbjct: 175 YFYD--NFIGQKIDTKTLISGKNLNQNITHQEIDKLLDSFKISFKEIGETFTYSITEYKY 232 Query: 245 RLRGETASFDIEANGKVYVEKGRR--------------ITARHIRQLEKDDVKLIEVPVE 290 G F+ + K K + +I L + Sbjct: 233 CNMGWFIDFNWKEISKYRFIKKNKNIISTSLSFDNNLLANNDYISILNTVVNNKFISNDK 292 Query: 291 YIAGKVVAKDYIDESTGELICAANM-------ELSLDLLAKLSQSGHKRIETLFTNDLDH 343 ++ + D ++ I EL + + LS + L N + Sbjct: 293 FLNHDLFLLDIYKDNKSIFIIENTNDDFSYPLELLNKVGSHLSSFKNSDFLFLIENKNIN 352 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED-----RYDLS 398 YI L+ P + R S V I + + ++ + +N FF E + L Sbjct: 353 YQYIFINLKEQPDSIRNSLQVVIESKKK--KLLMFFNSKHVLKNDFFLEKDVLFHNFKLG 410 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID--HLGNRRIRSV 456 +GR+K N E L+ D +++ LI I G E D + L NRR ++ Sbjct: 411 PIGRLKINLKFGLN--EKKEELTSIDFTRILRYLIQIDKGFIENDIYEEQSLLNRRFNNI 468 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGD--LDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 GE + L+ E K +S D + ++ + + N + + + S L Q+ Sbjct: 469 GEHLYSCLSDYLISKE-DSKYSVSKEDYIKNQMLFKKINNCRNAFYFLIRYLNKSSLCQY 527 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 +Q N LS + H R++S +GPGGL + E+RDVH + YG++CPIETPEG ++G++N+ Sbjct: 528 TEQANALSYLGHTRKVSIMGPGGLKNDNISLEMRDVHISTYGKICPIETPEGKSVGVVNN 587 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL- 633 LS+Y +TN LETPY V + VT+ IHYL+ EE Y IA A L ++G F+ Sbjct: 588 LSLYTRTNTLFQLETPYIFVKENFVTNIIHYLTPQEEKYYKIAHATEVLKKDGSFLNTKE 647 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 + CR VDY+++S+ Q+ S+ AS+IPFLEH+D NRALMG+NMQ+QAVP L Sbjct: 648 IYCRYLHSLITVDSKNVDYIEMSSGQITSLSASMIPFLEHNDGNRALMGSNMQKQAVPLL 707 Query: 694 RADKPLVGTGMERAVAVD-----SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 +K L+GTG+E + D + V + +I+ K N++ ++ + Sbjct: 708 NLEKSLIGTGIEGIIGRDFFNISKNLLLEKMTNENVFGISILKILKKENKNIIFSQFVDL 767 Query: 749 DI-----YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 I Y+ K+ SNQ T I+ + ++ G S EL+LG N+ V Sbjct: 768 FIKNHFLYSTIKHKNSNQKTDIDFKYVNKKNINIFENNIDNIGYSIKNNELSLGNNVLVG 827 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS 863 F NG+ FEDSI++SER+V+++ F +IH++ + K E I + + Sbjct: 828 FTSMNGHTFEDSIVISERIVRDNYFQSIHLEVYKTMEMYEKDSQEIIRNFL------STD 881 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 LD G++++G V DIL+GK K + L+ + KL+ V D S+R N Sbjct: 882 FLDVDGVIHLGTNVCTNDILIGK--EKRQLLLSEKNKLI----------VYDKSIRYKNK 929 Query: 924 VSGTVIDVQVFTRDGVEKDKRAL 946 G VI + F V+ +K + Sbjct: 930 KKGVVIQIAKFFDSLVDLNKHYI 952 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 137/300 (45%), Positives = 196/300 (65%), Gaps = 4/300 (1%) Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 L++VKV +A K IQ GDK+ GR+GNKGVIS+I +EDMPY +GTP+DIVL+PLG Sbjct: 1179 NNYSLRMVKVVVACKHNIQVGDKLTGRYGNKGVISRILSLEDMPYLRDGTPLDIVLSPLG 1238 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 V SRMNIGQ+LE HLG+A + K+ +++ V K R+++ Y ++ Sbjct: 1239 VSSRMNIGQLLECHLGLAGVELSKKLQQIIQTYDIVGKSRKYLSMLYRNKKELLLLN--- 1295 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + +D +++ L +N+ G+PI+TP+F+ A +I LL++ L ++ + DG TG + Sbjct: 1296 SLNDSQIICLFKNISHGIPISTPIFNSANNFDIDNLLRISGLNIQSKVTIIDGITGVVLD 1355 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 VTVGYMYM+KLNHL+D K+H RSTG Y+++TQQ GK++ GGQR GEMEVWAL+AYG Sbjct: 1356 NKVTVGYMYMMKLNHLIDHKIHGRSTGPYNIITQQASKGKSRNGGQRLGEMEVWALQAYG 1415 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 AAYTLQEMLT KSD R+ +N + G +P +F +L E+R LG+ + + Sbjct: 1416 AAYTLQEMLTFKSDSTISRSSFLQNFIRG-KTSRIDIPRTFKLLRDELRVLGMELNFIVK 1474 >UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y3J9_CLAL4 Length = 1232 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 125/914 (13%), Positives = 268/914 (29%), Gaps = 111/914 (12%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF----DPKDNLFVRI 198 RV QL R P V + R+ YRG L D ++ VR Sbjct: 143 RVDSVQLAR-PSVPPTDKLSVNRKTFPSECRERMSTYRGKLLMKVVWSVNDGEEVSEVR- 200 Query: 199 DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFDI 255 ++P + + +L +K + + + + L + + + Sbjct: 201 -DGGQVPIMLKSNRCHLEKLSPDELVAQKEESDELGGYFIVNGIEKLVRMLIVQRRNHPM 259 Query: 256 EANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 + +G T IR + D V G V + ++ + Sbjct: 260 ALIRPSFGNRGASYTKFGVQIRCVRPDQTSQTNVLHYLKDGNVTFRFSWRKNEYLVPVVM 319 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 ++ ++ + G +T + D + T + + + S L + R Sbjct: 320 VLKALVETNDREIFDGIVAADTSNSFLTDRLELLLRTYKQYNLHSQKSTLAYLGDKFRVA 379 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 T + ++ VGR R +L ++ ++KL Sbjct: 380 FGATPDVSD---------------IDVGREVLKRIVLVHLP--DNADKFRLLLFSIRKLY 422 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL----------GD 483 + G D+ D ++ + G + + + + +K ++S D Sbjct: 423 TLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKMQISSDIGRGVRVNFND 482 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRR 529 + M + I ++ F + L + ++ N I+H R Sbjct: 483 RKYMSRVFMRTNENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRM 542 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 + G E VR + P +G +CP+ TP+G GL+N L+ Q + Sbjct: 543 V---HRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCQIATKASDVS 599 Query: 590 PYRKVTDGVVTDEIHYLS------AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 + H + + ++ ++ ++ + L + +G + Sbjct: 600 AVPAALARLGVSPAHTFAAGPGLCCVHLDGKIVGW--TSHEQGRIVADSLRLWKVQGLHN 657 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVG 701 L ++ Y+ L F H R + ++ + P + + Sbjct: 658 LPKDLEIGYV---PPSSKGQYPGLYLFGGHSRMMRPAKYLPLDKEDILGPFEQVYMNIAV 714 Query: 702 TGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 T E V + ++ + + D ++ + + +M G L Sbjct: 715 TPAEIEENVHTHVEFAPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALV-- 772 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 RS+ Q + + D D G N VA + + GY+ +D++ Sbjct: 773 HRSDNKLYRLQTGQTPIVKANLYDDYGMDN-------FPNGMNAVVAVISYTGYDMDDAM 825 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT----ADIPNVGEAALSKLDESGIVY 872 ++++ + + ++ + IT E KLD+ G+ Sbjct: 826 IINKSADERGFGYGTVYKVEKVDLSLSRRRGDPITQHFGFGSDEWPETWKEKLDDDGLPL 885 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 IG +V GD +V G+ SS + +V+ Sbjct: 886 IGVKVEEGDPIVAY---------------FDETLGKTKIKTYHSS------EPAYIEEVK 924 Query: 933 VFTRDGVEKDKRALEIEEMQ---LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 + D + + + + I+ K S Q + + + Sbjct: 925 LLADDTGDSECQQITIKYRVTRAPLIGDKFSSRHGQKGVCSRKWPTVDMPYSESGIQPDV 984 Query: 990 DKLPRDRWLELGLT 1003 P + + Sbjct: 985 IINPHAFPSRMTIG 998 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 108/596 (18%), Positives = 177/596 (29%), Gaps = 157/596 (26%) Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + P++ +N + ++ ++ T ++ +L T P V Sbjct: 737 ILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQ----TGQTPIVKA 792 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 + A+ D Sbjct: 793 NLYDDYGMDNFPN-------------------------GMNAVVAVISYTGYD------- 820 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 + D + + E+ + +++ I + F Sbjct: 821 --------MDDAMIINKSADERGFGYGTVYKVEKVDLSLSRRRGDPITQHFGFG------ 866 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRK 1035 + +KL D +G+ EE E L + + H E + + Sbjct: 867 -SDEWPETWKEKLDDDGLPLIGVKVEEGDPIVAYFDETLGKTKIKTYHSSEPAYIEEVKL 925 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 + DD + + + V R GDK + RHG KGV S+ P DMPY E+G D Sbjct: 926 LA--DDTGDSECQQITIKYRVTRAPLIGDKFSSRHGQKGVCSRKWPTVDMPYSESGIQPD 983 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 +++NP PSRM IG + ++ A GA Sbjct: 984 VIINPHAFPSRMT---------------IGMFVESL----------------AGKAGALH 1012 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 D + + E D E LKL G +Y G Sbjct: 1013 GIAQDSTPWKFSE-------------------DDTPADFFGEQLKLAGYNYHGNEPMYSG 1053 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 TGE+ + +G +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME Sbjct: 1054 VTGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMER 1113 Query: 1276 WALEAYGAAYTLQEMLTVKSDD----VNGRTKM------------------YKNI----- 1308 AL +G AY LQ+ L SD + ++ Sbjct: 1114 DALIGHGTAYLLQDRLLNSSDYAQTPICRSCGSLLNTQMSVPRIGSLASVKCRSCADKLE 1173 Query: 1309 -----------------------VDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 V G +P L E+ ++GI + Sbjct: 1174 TYIKKGEYVNEADIWEDGSGTKFVGGADTTTVAIPFVLKYLDSELTAMGIKMRYNV 1229 Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 60/448 (13%), Positives = 131/448 (29%), Gaps = 80/448 (17%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIE-------QDPEGQYGLE 50 M + +R ++ P L ++ + SF E G + Sbjct: 66 MGAQFRTLEREKRFQNPPKDKSAYPLLADAVAPHVGSFNALTEGADGGLLNLAVKDIGTK 125 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLRV 98 F S + + +++ S +L P EC+ R TY L + Sbjct: 126 TIFDSNDETRLGNK-LKIRVDSVQLARPSVPPTDKLSVNRKTFPSECRERMSTYRGKLLM 184 Query: 99 KLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG------------------------ 134 K+ + + E G++P+M + Sbjct: 185 KVVWSVNDGEEVSEVRDG--------GQVPIMLKSNRCHLEKLSPDELVAQKEESDELGG 236 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FE 187 F++NG E+++ + + + + + Y + R D Sbjct: 237 YFIVNGIEKLVRMLIVQRRNHPMALIR-PSFGNRGASYTKFGVQIRCVRPDQTSQTNVLH 295 Query: 188 FDPKDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + N+ R R+ +P ++L+AL T + F+ ++ N + + Sbjct: 296 YLKDGNVTFRFSWRKNEYLVPVVMVLKALVETND---REIFDGIVAADTSNSFLTDRLEL 352 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 LR ++ + G + + DV I+V E + V+ + Sbjct: 353 LLRTYKQY-NLHSQKSTLAYLGDKFR---VAFGATPDVSDIDVGREVLKRIVLVHLPDNA 408 Query: 305 STGELICAANMELSLDLLAKLSQSGH--KRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 L+ + +L + + + + + +G I E + N ++ Sbjct: 409 DKFRLLLFSIRKLYTLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKMQI 468 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFF 390 +I R +R +F Sbjct: 469 SSDIGRGVRVN-----FNDRKYMSRVFM 491 >UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lunularia cruciata RepID=Q1L6W1_9MARC Length = 789 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 152/931 (16%), Positives = 290/931 (31%), Gaps = 206/931 (22%) Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL-----------SQFMDQ 517 + + +++ LS + + + K I+ + F S + + Sbjct: 6 NTMRKRLQKHLSK-NQELSSIDKYVEDKVITRGFRNSFSSGNWMGHDLMKNSGIVFDLKR 64 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 +NP+S + R + P + + G + R + +GRVCPI+TP+G GL+ ++++ Sbjct: 65 SNPISTLCQLRELRQYVPPTV---KVGEDARHPTFSQWGRVCPIDTPDGEACGLVKNMAL 121 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH------FVE 631 + G E P + + +++ G + N ++ Sbjct: 122 TGIVSSAGT-EAPVIDFLESNGMIPLESVTSDTLGMVMKVFVNGRWLGVVKHTHFEPIIK 180 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVS-TQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 L R + ++ + +V + QV + ++ L N+ + + Q + Sbjct: 181 GLRALRKRPPTAELYQMEVVIIRPKFEIQVSTDSGRVLRPLLVVRHNKMNLNQDSVTQYI 240 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 R G ER V+ + + I + + E G Sbjct: 241 SEKR------GLPHERFTWFLQKHVIELLG---VEEEEKALIALHGADLEKANGLQSRKT 291 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 + PS LG + + +P+ Sbjct: 292 VEFSHA---------------------------EIHPSLILG-------LSASVIPFPHR 317 Query: 811 NFEDSILV-----SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 N L S++ + +++ LAC R G + V ++ L Sbjct: 318 NQSSRNLFQAHKHSKQAI------GVYVTNLAC--RADTSGQHLFYPQVQLVKTNIVNCL 369 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 + IF + + V + N Sbjct: 370 QKD-----------------------------------EIFSGQNAIVAIACYTGYNQED 394 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS-RIRAVLVAGGV 984 ++D R G+ + + + + + G + R +L G+ Sbjct: 395 SIIMDQSALDR-GMFRTQHYRTFKSEERSDHETFGKPSAADDSGGPRAMRSDQILEDDGL 453 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 + D + +T +K Q A D + + I D+ Sbjct: 454 PYIGCNLGMNDVIVGKIVTHSQKNTQSADSARLVDTSTRLKAHEKGRVEQVILVQDEE-- 511 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 KI KV L R Q GDK + HG KG++ + ED+P+ G DI Sbjct: 512 -GKKIAKVKLRETRIPQVGDKFSRMHGQKGIVGMVFTQEDLPFTNEGIVPDI-------- 562 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 I+ H + + +G + L + Sbjct: 563 -------IINPHAFPSRQTLGQMCESALGKAI---------------------------- 587 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGA-KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 ++G + F+ A I E L G +Y+G TG+ Sbjct: 588 -----------AKRGEQLFATPFNPASTVESITEALHESGYNGWGMETMYNGYTGKAMVA 636 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G + +L H+V+DK+ RS G +T+QP+ + + GG +FGEME L A+GA Sbjct: 637 KIFIGSTFYQRLTHMVEDKIKYRSRGHVHPLTRQPVSDRKRHGGVKFGEMERDCLIAHGA 696 Query: 1284 AYTLQEMLTVKSDDVNGRTK---------------MYKNIV-----------------DG 1311 A TLQE SD + Sbjct: 697 AATLQERTFHLSDYHEIHICRSCKQMAHMGIDRIPTCRFCKEKNKKVVKGKKTDKTETKV 756 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ +P + +L++E++S+GI++ L+ E Sbjct: 757 EEIVKVEIPYACKLLIQELQSMGISVGLDTE 787 >UniRef50_Q0CKF7 DNA-directed RNA polymerase I polypeptide 2 n=3 Tax=Trichocomaceae RepID=Q0CKF7_ASPTN Length = 1205 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 143/1133 (12%), Positives = 327/1133 (28%), Gaps = 173/1133 (15%) Query: 5 YTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 Y +R R P L + +DSF + L+ Sbjct: 14 YDVLRRERLFRHPPKDRTAYPSLADAIKPHVDSFNALFDGSKVLDAALKDIGTKT----- 68 Query: 62 YSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++ GEP ++ + R R P+ +++ +E Sbjct: 69 --------FID---GEPE-TPEQKKAR--------------QAEGRRPPKRNRLNVRIRE 102 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 V++ + P + + F R+ ++ + + + L Sbjct: 103 VFL-DRPAIPPSNKFT------------TRNRNIYPSECRERHATYRGKL---------- 139 Query: 182 SWLDFEFDPKDNLFV-RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 E+ + +V + ++P + + +L K E + Sbjct: 140 -RARLEYQVNNGDWVESVRELGQVPIMLRTNRCHLEKATPEELVQHKEESEELGGYFIVN 198 Query: 241 LVPERLRGE---TASFDIEANGKVYVEKGRRITARHI--RQLEKDDVKLIEVPVEYIAG- 294 + +R +F + +V++G T I R + D V G Sbjct: 199 GNEKLIRMLVVGKRNFPMAIIRGSFVKRGHTYTKYGIQIRSVRPDQTSQTNVLHYLSDGN 258 Query: 295 ---KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 + + +I A +E + + + T D + T Sbjct: 259 VTFRFSWRKNEYLIPVMMILKALVETNDREIFEGLVGNASSEGINNTFVTDRVELLLRTY 318 Query: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 + + R S + +P + + F + L +G + Sbjct: 319 KGYNVHTRSSCRAYLGEKFKPVLGVPSDMSNEDAGTEFL--RKVVLPHLG--------NQ 368 Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 E I+ +++KL + G D+ D + N+ I G + + L Sbjct: 369 NVTETQDYDKFKMIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERLEEW 428 Query: 472 ERA----VKERLSLGDLDTLM--------PQDMINAKP--ISAAVKEFFGSSQL------ 511 R+ +++ + + ++ + +A++ F + L Sbjct: 429 VRSFGPILRDWSNRNNGAKFTDPAFERDFLSKIVKRSNENLGSALEYFLSTGNLVSPTGL 488 Query: 512 --------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 + ++ N I+H R I G + VR + P +G +CP+ T Sbjct: 489 DLQQASGYTVMAEKINFYRFISHFRMI---HRGSFFAQLKTTTVRKLLPESWGFLCPVHT 545 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 P+G GL+N L+ + + K+ + S++ V Q + + Sbjct: 546 PDGAPCGLLNHLAHKCLISTSDIDVSHLPKLLVQLGVRS---ESSVSLDESVPVQIDGRI 602 Query: 624 DEEGH------FVEDLVTCRSKGESSLFSRDQVDYMDVS------TQQVVSVGASLIPFL 671 + L + ++ ++ Y+ S + S A + + Sbjct: 603 VGYCSPKQARVVADTLRYWKVMEMHNVPKELEIGYVPNSNGGQYPGIYIFSQAARMFRPV 662 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPL---VGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 ++ ++ ++ + + L V T +E + ++ + + D Sbjct: 663 KYLLLDKLDYVGPFEQPFLEIACLPEDLIPGVSTHIEF-----TPTNILSIVANMTPFSD 717 Query: 729 ASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 ++ + + +M G + R++ Q + P + Sbjct: 718 YNQSPRNMYQCQMSKQTMGTPGTAIDY--RTDNKLYRLQTGQTPIVRPPLYN-------A 768 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 L G N VA + + GY+ +D++++++ + + D Sbjct: 769 YGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGHGTIYKTKIHSLDDKDSRRG 828 Query: 849 EITADIPN---------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 +I + + LDE G+ +IGA V G ++ + Sbjct: 829 RSRREITKLFGFAPGGEIKAEWRNSLDEDGLPHIGARVREGSLVAA----WHTVRYDAAT 884 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 + G ++ + G + ++V G E + ++ + +K Sbjct: 885 DSYVNVDGITHF------IKYKDAEEGYIDSIRVM---GAETGVEPCQSISVKYRVPRKP 935 Query: 960 LSEELQILEAGLFSR-IRAVLVAGGVEAEKLDKLPRDRWLELGLTDE-EKQNQLEQLAEQ 1017 + + G I ++ + +A L P+D + EQL + Sbjct: 936 VIGDKFSSRHGQKGMTIAQMIESMAGKAGALHGHPQDSTPFQFSEENTATDYFGEQLRK- 994 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 + G + A + V Y ++ DK R Sbjct: 995 -----AGYNYYGNEPLYSGITGKEFAADIFIGVVHYQRLRH--MVNDKFQVRT 1040 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 89/524 (16%), Positives = 155/524 (29%), Gaps = 144/524 (27%) Query: 801 RVAFM-PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 VA M P++ YN + ++ ++ T + ++ +L T P V Sbjct: 708 IVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYRLQ----TGQTPIVRP 763 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 + + AI D Sbjct: 764 PLYNAYGLDNFPN-------------------------GTNAVVAIISYTGYD------- 791 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 + D + + E+ I + ++ S + +++ Sbjct: 792 --------MDDAMIINKSSHERGFGHGTIYKTKIHSLDDKDSRRGRSRRE--ITKLFGFA 841 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL-------------KHEFE 1026 G ++AE + L D +G E +YD + Sbjct: 842 PGGEIKAEWRNSLDEDGLPHIGARVREGSLVAAWHTVRYDAATDSYVNVDGITHFIKYKD 901 Query: 1027 KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 + G + + + V V R+ GDK + RHG KG Sbjct: 902 AEEGYIDSIRVMGAETGVEPCQSISVKYRVPRKPVIGDKFSSRHGQKG------------ 949 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ 1146 M I Q++E+ G A G ++ Q E ++ Sbjct: 950 --------------------MTIAQMIESMAGKAGALHGHPQDSTPFQFSEENTATDY-- 987 Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 E L+ Sbjct: 988 ------------------------------------------------FGEQLRKAGYNY 999 Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1266 G LY G TG++F + +G ++ +L H+V+DK R+TG + +T QP+ G+A+ G Sbjct: 1000 YGNEPLYSGITGKEFAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNSLTGQPVKGRAKGG 1059 Query: 1267 GQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 G R GEME +L A+GAA+ LQ+ L SD R + ++ Sbjct: 1060 GIRVGEMERDSLIAHGAAFILQDRLMNCSD--TQRAWICRDCGS 1101 >UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophyta RepID=Q9LK40_ARATH Length = 1172 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 167/1048 (15%), Positives = 319/1048 (30%), Gaps = 194/1048 (18%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 D L+S QL+S+ FIE GL+ F+S + L EP Sbjct: 41 SFFDKYGLISHQLNSYNYFIEH------GLQNVFQSFGEM---------------LVEPS 79 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 FDV + + Y+ ++ + + + ++ + + MT + +N Sbjct: 80 FDVVKKKDNDWRYATVKFGEVTVEKPTFFSDDKELEFLPWH----ARLQNMTYSARIKVN 135 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 V + + K +G+ Y + I + +D L Sbjct: 136 VQVEVFKNTVV----------KSDKFKTGQDNYVEKKI--------LDVKKQDILIGS-- 175 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG 259 +P + IL EK + + + F I+ Sbjct: 176 ----IPVMVKS---------ILCKTSEKGKENCKKGDCAFD--------QGGYFVIKGAE 214 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIE-----VPVEYIAGKVVAKDYIDESTGELICAAN 314 KV++ + + T R V + ++ A+DY + + Sbjct: 215 KVFIAQEQMCTKRLWISNSPWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLS 274 Query: 315 MELSLDLLAK-LSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL--------SALVE 365 E+ + LL L S K L D D + + D + +AL Sbjct: 275 TEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNALTY 334 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + + ++ + P E+ + L S + Sbjct: 335 VEQQIKSTKFPPAESVDECL----------------------HLYLFPGLQSLKKKARFL 372 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL---G 482 ++K L++ GK + ++ D N+RI GE+ E + RV L R + + G Sbjct: 373 GYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSG 432 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRR 529 D D + ++A I+ + F + S + + NPL + RR Sbjct: 433 DGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRR 492 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 + + R HP+H+GRVC + TP+G N GL+ ++S+ + LE+ Sbjct: 493 ----TRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQ-SLES 547 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD----EEGHFVEDLVTCRSKGESSLF 645 K+ +E+ + N + + FV +L + R + E Sbjct: 548 VVEKLFA-CGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPRE 606 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD--------- 696 + D D + ++ + L+ L + + L + L Sbjct: 607 MEIKRD-KDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIE 665 Query: 697 ----------------KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 +P + T E + + VV + + + + + Sbjct: 666 EEEDCNTAWGIKQLLKEPKIYTHCELDL-----SFLLGVSCAVVPFANHDHGRRVLYQSQ 720 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 + I + R + + P L + + L GQN Sbjct: 721 KHCQ-QAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLA-------SECLKKEVLFNGQNA 772 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR-----DTKLGPEEITADIP 855 VA GYN EDSI++++ ++ F + I+ K E + Sbjct: 773 IVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELVQFGKT 832 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 + + L++ G +IGA ++ GDI++G+ T G D Sbjct: 833 HSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESG----------------------AD 870 Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 S+++ + G V V + + D + + K S Q G Sbjct: 871 HSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQ 930 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + P Sbjct: 931 QNFPFTIQGIVPDIVINPHAFPSRQTPG 958 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 93/450 (20%), Positives = 168/450 (37%), Gaps = 76/450 (16%) Query: 922 NGVSGTVIDVQV--FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 NG + V + ++ +A M + + E+ ++ ++ ++ Sbjct: 768 NGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELV 827 Query: 980 VAGGV--EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRK 1035 G + K+D L D + +G + + E +K + ++ ++ Sbjct: 828 QFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVV 887 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 ++ D+ V L R GDK + HG KGV+ + ++ P+ G D Sbjct: 888 LSSNDE----GKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPD 943 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 IV+NP PSR GQ+LE L I ++++ A + + A Sbjct: 944 IVINPHAFPSRQTPGQLLEAALSKG-------IACPIQKEGSSAAYTKLTRHA------- 989 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 F EI E L G R+Y+G Sbjct: 990 -----------------------------TPFSTPGVTEITEQLHRAGFSRWGNERVYNG 1020 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 R+GE + +G + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME Sbjct: 1021 RSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1080 Query: 1276 WALEAYGAAYTLQEMLTVKSD----DVNGRTK-------------------MYKNIVDGN 1312 L A+GA+ L E L SD + + K + V + Sbjct: 1081 DCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSD 1140 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 H + +P +L +E+ S+GI + + + Sbjct: 1141 HVVRVYVPYGAKLLCQELFSMGITLNFDTK 1170 >UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit RPA2 n=10 Tax=Ascomycota RepID=RPA2_SCHPO Length = 1174 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 127/1071 (11%), Positives = 280/1071 (26%), Gaps = 193/1071 (18%) Query: 1 MVYSYTEKKRIRKDFGKRPQVL-DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI 59 M + E++R K+ K D+ + +DSF L A + + Sbjct: 1 MSFQTLERERTFKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGL-----LNYAVKEIGEK 55 Query: 60 QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 ++ + E A + K Sbjct: 56 CAFD-------------------------------------SITQEEGGALKFGNKISFR 78 Query: 120 -QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 EV + + P+++ IN V+ + + + L Sbjct: 79 VDEVQIAK-PMLSSRERSSIN-------------RKVYPAEARERLTTYKSRLVLKFSWS 124 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 G E +P + + +L K E Sbjct: 125 VNGGPRQSEMREVGM----------IPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFI 174 Query: 239 MELVPERLRG---ETASFDIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIA 293 + + + +R + + +G + IR + D L Sbjct: 175 VNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNN 234 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G + + + ++ + ++ L+ K G + T D + + Sbjct: 235 GVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKS 294 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 + L + R + + VGR + +L Sbjct: 295 YGLYSQTETLQYLGSKFR---------------VVLGVAEDLTDVEVGRFLLQKVVLVHL 339 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 E ++ +++KL + G+ D+ D ++ I G + + + Sbjct: 340 REAK--DKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLN 397 Query: 474 AVKERLSL-----------GDLDTLMPQDMINAKPISAAVKEFFGSSQL----------- 511 +++ +++L D L I ++ F + L Sbjct: 398 SIRAQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQA 457 Query: 512 ---SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 + ++ N ++H R + G E VR + P +G +CP+ TP+G Sbjct: 458 TGYTVVAEKLNFYRFLSHFRMV---HRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSP 514 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL------SAIEEGNYVIAQANSN 622 GL+N L+ + + + + + D + ++ ++ Sbjct: 515 CGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVVGHESGWGCVQLDGKIVGWCTYK 574 Query: 623 LDEEGHFVEDLVTCRSKG-------------------ESSLFSRDQVDYMDVSTQQVVSV 663 L H + L + + E + S Sbjct: 575 L--AKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSH--NGQYPGLYLFSN 630 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLR---ADKPLVGTGMERAVAVDSGVTAVAKR 720 A ++ ++H M ++ + P V T +E S ++ Sbjct: 631 PARMVRPVKHISTGELDMLGPFEQVYMDIACFPKEIVPKVSTHVEY-----SPTNVLSIV 685 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 + + D ++ + + +M G L R++ Q + P Sbjct: 686 ANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRY--RTDNKLYRLQTGQTPVVRPKLHN 743 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 D G N VA + + GY+ ED++++++ + + + Sbjct: 744 TYGLDH-------YPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDL 796 Query: 841 RDTKLGPEEITADIPN-----VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 + E + L KLD G+ +IG ++ GD +V Sbjct: 797 SQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLEDGDPIVAYY------DE 850 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD---KRALEIEEMQ 952 + + + G G V +V++ D + + Sbjct: 851 STGQNFIETYHGT---------------EPGFVDEVRLLGNDVGDSECQQIHVKLRITRS 895 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 K S Q + + P + + Sbjct: 896 PIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIG 946 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 104/512 (20%), Positives = 172/512 (33%), Gaps = 107/512 (20%) Query: 888 TPKGETQLTPEEKLLRAIFGEK--ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 TP + + KL R G+ ++ + + +GT V V + G + + Sbjct: 713 TPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAM 772 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRA-------VLVAGGVEAEKLDKLPRDRWL 998 + + + + + + R E L KL D Sbjct: 773 ILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLP 832 Query: 999 ELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +G+ E+ + E + + G+D+ + + V L + Sbjct: 833 FIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRI 892 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R GDK + RHG KG+ S+ P DMP+ E+G DI++NP PSRM Sbjct: 893 TRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRM--------- 943 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 IG I ++ A GA D + F E A Sbjct: 944 ------TIGMFIESL----------------AGKAGACHGLAQDSTPFIYSEQQTAA--- 978 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 E L G +Y G TG++ + + +G +Y +L Sbjct: 979 ----------------DYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLR 1022 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK R+TG +T+QP+ G+ + GG RFGEME A+ +G ++ +Q+ L SD Sbjct: 1023 HMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNCSD 1082 Query: 1297 D----VNGRTK--------------------MYKNI----------------------VD 1310 V ++ V Sbjct: 1083 YAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCAKPALGLEDTSDIWQDGSGKKFVG 1142 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G + +P FN L E+ ++ I + LE + Sbjct: 1143 GTNTTLIALPSVFNYLTAELTAMNIKMMLEVK 1174 >UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SSM5_METLZ Length = 637 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 150/751 (19%), Positives = 244/751 (32%), Gaps = 147/751 (19%) Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 +V +D+ F + R G S + Y D S Sbjct: 9 FVDGALIGKVDDAYGFTRNFRQMRRSGHVSTEV--NISYKDYS----------------- 49 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV--TAVAKRGGVVQYVDASR 731 N ++ + R P + + + E V SG G ++++DA Sbjct: 50 ---NEIVINTDRGRARRPLIVVENGVPAVTPEDIEIVRSGAEDFMALVSQGKIEFIDAEE 106 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 + +LT L PS L Sbjct: 107 EDDLF---------IAVQESDLTPEHTH-----------------------LEIDPSLIL 134 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 G + A +P+ +N + + ++++ + R G Sbjct: 135 G-------IGAAHVPFPEHNASPRVTMGAGMIKQALG----FAQANMKLRPDTRGHMLHY 183 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 A +P V A + + AI + Sbjct: 184 AQVPMVHTQAAELIGSDNRPQ-------------------------GQNFCVAIISYEGY 218 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR----ALEIEEMQLKQAKKDLSEELQIL 967 +++D+ + V V F E+ + IE + L Sbjct: 219 NIEDALIFNKASVERGVGRSHFFRTYEGEERRYPGGQVDRIELPEEDVQGSHGIGSYANL 278 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 + V+ V K G ++ + + + +E Sbjct: 279 DVDGIINPETVVNEKDVLIGKTSPPRFLEEPT-GELIAVEKRRDTSITMRSNETGIVDTV 337 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + + ++VKV R + GDK A RHG KGV I P E+MP+ Sbjct: 338 II-----------TESENSSRLVKVRTRDLRIPEIGDKFASRHGQKGVCGLITPQENMPF 386 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 G D+V+NP VPSRM IG +LE G A G ++NA ++ +V K+ + Sbjct: 387 TAAGIAPDLVINPHAVPSRMTIGHMLEMIGGKAGALEGSRVNATSFRKTQVEKIFDSSFA 446 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 L D D+ + + +E ++ L + Sbjct: 447 QNRLLNDKEIGKDVKSSTL-----------------------TREQVLRHQLAEAGFAHT 483 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G+ +YDG TG +F+ + +G +Y KL H+V KMHARS G ++T+QP G+A+ GG Sbjct: 484 GREVMYDGITGRRFQADIYIGVIYYQKLYHMVSTKMHARSRGPVQVLTRQPTEGRAREGG 543 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM------------YKNIVDG 1311 RFGEME + +GAA L+E L +SD V R M Sbjct: 544 LRFGEMERDVMIGHGAAMALKERLLDESDAVKQYVCARCGMVAMYDAKQKMTRCLACGAE 603 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 E M +F +LL E++S+GI L E Sbjct: 604 TDIYEVEMSYAFKLLLDEMKSMGIAPRLRLE 634 >UniRef50_C5LHP3 DNA-directed RNA polymerase n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LHP3_9ALVE Length = 993 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 119/810 (14%), Positives = 231/810 (28%), Gaps = 108/810 (13%) Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 V T + + + + + + + ++ + + + Sbjct: 209 NLTYSSPVYVNVTQTTYALADPDDPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQT 268 Query: 316 E-----LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 E + + + E + + + MM Sbjct: 269 ERGLVEMGECVFDQGGYFIINGSEKVLIAMERMANNFVYCFQKKQPAKYTWICXXLLDMM 328 Query: 371 RPGEPPTREAAES-------LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 G P + + + Y+ A ++ + Sbjct: 329 PRGRLPWTSSLKEGQPLGHRRVVVYTGLPNVYNRYAKELLQKELLPHLGVKQYCEPRKAY 388 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG- 482 I ++ +L+ + G+ DD DH G +R+ G + F ++ + K L Sbjct: 389 FIGYMVHRLLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKRILQRQV 448 Query: 483 -DLDTLMPQDMINA-KPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHK 527 I + I+ ++ + SQ +++ +S ++H Sbjct: 449 DSGRHFDLNSAIRSASSITDGLRYQLATGNWGIDKSGKSVRTGVSQVLNRLTFMSTMSHL 508 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RR++ L R + R +H TH+G +CP ETPEG +GL+ ++++ G L Sbjct: 509 RRMNT----PLERSGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTITV-GSL 563 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESS 643 + + + ++ + + N E L R K + Sbjct: 564 PNVVYDFLNEWGLENLDEINPSQIKHMTKVFLNGQWVGMHADATMLCETLRDLRRKRDID 623 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 D L F + A R L Q L + V Sbjct: 624 PEVSIIRDL----------QANELRIFTDGGRACRPLYVV--QPPPSQKLCIKREHVEAL 671 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASR-------------------------IVIKVNE 738 + + G + G+V+Y+DA Sbjct: 672 RRMLLNNEHGGWDMLVEEGLVEYIDAEEEETCMVAMFVDDLRNAQRRKSKASSYCHTYTH 731 Query: 739 DEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS------- 788 E++P I + +S +NT + M ++G ++ D + Sbjct: 732 CEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYATNFNMRIDTMAHVLNYPQ 791 Query: 789 -----------TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 EL G N VA M ++GYN EDS++++ + ++H + Sbjct: 792 KPLVGTRAMEYLRFRELPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYM 851 Query: 838 CVSRDTKLGPEEITADIP-----NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 + E + SKLD G++ G V G DIL+GKV+P Sbjct: 852 ADEKRQGAQVVEEFRAPSWSKTYAMKRGDYSKLDNDGLINPGTRVHGDDILIGKVSPIPN 911 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ 952 + +D S+ + +G V V + K + Sbjct: 912 QTDEEGRI--------QKYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVRTLRV 963 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 K S Q G+ R + Sbjct: 964 PTIGDKFASRHGQKGTMGISYRQEDMPFTQ 993 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 62/212 (29%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY---------- 62 + L+S Q+ SF F+ Y ++ PI Sbjct: 113 DSWAVADAYFKDKGLVSQQVGSFDDFVT------YKMQEIVDECPPITIIPQNQVGWESE 166 Query: 63 ------SGNSELQYVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIY- 105 + +++ L +P + ++R +TYS+P+ V + Y Sbjct: 167 GARVYMDSSFLVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYA 226 Query: 106 -----EREAPEGTVKDIKEQEVYMGEIPLMTDNG------------------------TF 136 + + + + + ++ +G IP+M + F Sbjct: 227 LADPDDPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYF 286 Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 +ING+E+V+++ + + K + Sbjct: 287 IINGSEKVLIAMERMANNFVYCFQKKQPAKYT 318 >UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYC9_9BACE Length = 1237 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 254/1380 (18%), Positives = 439/1380 (31%), Gaps = 251/1380 (18%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP-EGQYGLEAAFRSVFPIQS 61 +SY RI K + +D+ LL Q +S+QK++ + L R + +Q Sbjct: 2 FSYDPSNRILKVQKLAEEEVDL-GLLEYQKESYQKYLTETIYSDMEYLLQVMREL--LQV 58 Query: 62 YSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++E + G E + + +Y P+ K + + E Sbjct: 59 SQVDAEFRVGDLYCGNYK---NEVKKKSPSY-YPVYAKFTI-----------DGAVFPNE 103 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 V + IP M ++G NG RV++ Q+ + V + +DK + Sbjct: 104 VEVFRIPAMDEDGILNFNGDRRVLLMQMVAAERVSYAADKQTVSITTPRRN--------- 154 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALN------------YTTEQILDLFFEKV- 228 + FD ++ ++ R K+P ++RA N +T+ IL F Sbjct: 155 --ISLMFDGTKDVTIKYGPRNKIPMHKLIRAYNAKEKVYDDPSKLFTSAYILSAFATDSA 212 Query: 229 -IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL---EKDDVKL 284 E +++L + G+ + + R R + + + ++ Sbjct: 213 ATDEAIEDELDKLNIYATYSGDDYALGKTRDALNEALSLDRARGRILSRPVGPFEAGRRV 272 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + + YI + + Y+ + L+ +L+ +G L + Sbjct: 273 DDEVLHYIHLHCINEIYVKAIPDVV----GYTLTQELVISFVPAGTHNNSRLQEALPEFA 328 Query: 345 PYI--------------SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESL------ 384 Y ETL + RPG P R E Sbjct: 329 DYSAIPQDSQVCIFMSSKETLTKEDVQFLYDVGAHHVDCKRPGSAPIRATFEEEVIGNYT 388 Query: 385 -----FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 R+ V N + + I + Sbjct: 389 VRLGDIYGHNIPAGRFHDEWVCFY--NNPKFERTDMDHLNTHDLMALYSLCAFIKKNPEE 446 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPIS 499 + D D +++ + E+ N R L + +S L+ + +S Sbjct: 447 NFLLDKDFGLLKKVLAANELFSNAMREVLPDFVKHYSVSISRAISQNLLTEGKFAG--LS 504 Query: 500 AAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 K++ + NP++ + + L ++R + YGR+C Sbjct: 505 DMWKKYLWDKNYLDIANTINPIAVVAQ----TNHLVSDLHTSEIPEKMRLLSMGFYGRIC 560 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQA 619 P ETP G +G+ N+ ++ A+ + G L TPYR+V S +E Y+ AQ Sbjct: 561 PYETPSGKKLGITNTKAIGARIKD-GILTTPYRRVLKN---SNGEIESISQEITYMDAQ- 615 Query: 620 NSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA 679 +E + DL++ + D R Sbjct: 616 ----EEAQFRIGDLLSLKK------------------------------------DGYRY 635 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 L M R P + V V ++ ++ + + V Sbjct: 636 LNTKVMARVPAPNNQVTVESVDAYTLDYVNAYCEQH-LSPTAALIPFAGSDDAVRVTYAT 694 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 M + + + S C N V R +G+L L Sbjct: 695 NMLKQSILVQGSQIPRVFTSMYRRCFNHS-----NTYVIRAKKDGWVEQIPMGKLQL--- 746 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 ++ ED I + E V ++ Sbjct: 747 ------TYDDGTIED-IEICETSVTNQSVNFLNFH------------------------- 774 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 V G GD+LV E +P L A + + +D+ Sbjct: 775 -----------VKEGDHFKKGDVLVDS-AIAREGIYSPGVNLFAAYLAD-GYNYEDAVEL 821 Query: 920 VPNGVSGTV-IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 + + I + T + ++ + + + E I + S+ A Sbjct: 822 SEYAANQFISISTETITHRMHRQSNESIRVGTEYCY---RFIPENGVIAKVSRQSKSDAR 878 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 + V L E+ ++ +LAE Sbjct: 879 CHSKDVLRSGK--------HSGILYKIERNHKETRLAEYNA------------------- 911 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 +L R++ GDKMAGRH NKG S I +MP NG +DI+L Sbjct: 912 --------------HLLSFNRLRTGDKMAGRHSNKGTASIIRKNSEMPCFMNGRQLDILL 957 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP GVPSRMNIGQ E +LG A + + + ++ ++ +DL + K Sbjct: 958 NPCGVPSRMNIGQNFEAYLGFIAYLLDVYVESDPFNGATKGDIKLLMRYVWDLANNENAK 1017 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 S + + +R+ I++ G G L++ TG Sbjct: 1018 SVCSNYPMLPSTLHEQAIRR-------------HEAIRD--WAGCFNPDGTAYLWNPATG 1062 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARS---TGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 + E PVT G YMLKL H V+ K HAR+ YS +++QP G A+ GGQ+ GEME+ Sbjct: 1063 KCLENPVTFGVPYMLKLEHEVNHKFHARAGMLEEDYSQISKQPTEGSARGGGQKMGEMEL 1122 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG--MPES---FNVLLKEI 1330 AL AYGA L E SD+V R ++ + G +P + F L+ + Sbjct: 1123 CALAAYGATDFLYETCNSMSDNVLDRVNTTLRTLNLPEYTQGGESVPHAVEMFRYFLETL 1182 >UniRef50_Q17U53 DNA-directed RNA polymerase, putative n=1 Tax=Solanum bulbocastanum RepID=Q17U53_SOLBU Length = 1018 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 149/1056 (14%), Positives = 312/1056 (29%), Gaps = 205/1056 (19%) Query: 13 KDFGKRPQ--VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 ++F K+ + ++S Q+DS+ FI YG++ F SV I Sbjct: 69 RNFCKKASAGFFEKYGVISHQIDSYNDFIR------YGIQRVFDSVGEIH---------- 112 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM----GE 126 EP +D + +++ K+ L + A E E+ + + Sbjct: 113 -----VEPGYDPSKKGEGDWKHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLNLWPRHAR 167 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 + MT + ++ F ++ + ++ Sbjct: 168 LQNMTYSARIIVE--------------THVFTKKLVRSDKFK-------------TGVEQ 200 Query: 187 EFDPKDNLFVRID-RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 D + + + D ++P + + D F+ + I ++ + E+ Sbjct: 201 FVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCEFDHGGYFIVKGAEKIFIAQEQ 260 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 + + + V G + +++ E + I+ + ++ A+ I Sbjct: 261 ICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEAKALSVYFFAEMPIWVL 320 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 L +++ E+ + + + I +D D + AL Sbjct: 321 FFALGVSSDREVVDLIDVDIKDTNIINILVASIHDADKN--------CEDFRKGKKALAY 372 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + R+++ + P +E+ E + F + Sbjct: 373 VDRLVKSCKFPPQESVEECIKEYLFPN----------------------LSGLKQKARFL 410 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--- 482 ++K L+ G+ +VD+ D N+R+ GE+ E + RV + ER + + L Sbjct: 411 GYMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHVKHAERRMVKALQRDLCG 470 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRR 529 D + ++A I+ + F + + + NPL R+ Sbjct: 471 DRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRK 530 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +T + R HP+H+G+VC + TP+G N GL+ +L+ + + Sbjct: 531 ----TRQQVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVST--TVLK 584 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESSL- 644 P + ++ SA + + FV L R + E Sbjct: 585 PLLETLFRCGMQKLVDDSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRQRRRNEVPHQ 644 Query: 645 ------FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL----- 693 + ++ + E D R + ++ R P L Sbjct: 645 LAHTLAIPPGICYLLPTHVPVTLTEAQVEVKRDEQQDEVR--IFSDAGRIMRPLLVVSNL 702 Query: 694 --------------------------------RADKPLVGTGMERAVAVDS--------- 712 + G+E + D Sbjct: 703 KNIKALKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTH 762 Query: 713 ----GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 + G++ + + + + E + I + R + NT Sbjct: 763 CELDMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQ-QAIGFSTVNPNARVDTNTHQLYY 821 Query: 769 PCVSLGEPVERGDV------LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 P L + + E GQ VA GYN EDS++++ Sbjct: 822 PQRPLFGTMLSDSLGKPKCARHQKGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRAS 881 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEIT------ADIPNVGEAALSKLDESGIVYIGAE 876 ++ F + H++ + + ++ + LD+ G +IGA Sbjct: 882 LERGMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGFPFIGAN 941 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 + GDI++GK G D S+++ + G V V + Sbjct: 942 LQSGDIIIGKYAESG----------------------ADHSVKMKHTERGMVQKVLLSAN 979 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF 972 D + + + K L AG+ Sbjct: 980 DDGKNFAVVSLRQVYEKSVIIKKPYYVFGELFAGIL 1015 >UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain (Partial sequence n terminus) protein (Fragment) n=1 Tax=Ralstonia solanacearum RepID=B5RWZ2_RALSO Length = 587 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 254/441 (57%), Positives = 331/441 (75%), Gaps = 6/441 (1%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR V VP+LL+ Q+ S+ +F+++ GL+AAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHVSVAQRKTEGLQAAFNAI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + +++VSY L P FDV+ECQ RG+T+ + LR K+RL+I +RE P VK+ Sbjct: 61 FPIVSHNGLARMEFVSYHLSHPPFDVKECQQRGLTFHSALRAKVRLIINDRENPTK-VKE 119 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKEQEVYMGEIPLMT G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 120 IKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 179 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDF+FDPKD L+ R+DRRRK+P TI+L+++ T EQIL FF F ++ + Sbjct: 180 IPYRGSWLDFQFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKSDG 239 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ME VPERLRGE A FDI + NGKV +EK +RI A+HIR L+ KLI VP +Y+ G+ Sbjct: 240 ALMEFVPERLRGEVARFDISDKNGKVVIEKDKRINAKHIRDLDAAGTKLISVPEDYLLGR 299 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 V+AK+ +D TGE++ AN EL+ +L KL +G K I+TL+TNDLD GPY+S+TLR D Sbjct: 300 VLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKDIQTLYTNDLDQGPYMSQTLRTDD 359 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T D+ +A + IYRMMRPGEPPT +A E+LF+ LF++ED YDLS VGRMK N L R E Sbjct: 360 TVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDSYDLSRVGRMKVNSRLNRSEGT 419 Query: 416 GSGILSKDDIIDVMKKLIDIR 436 G +L+ DDI+D +K L+++R Sbjct: 420 GPMVLTDDDILDTIKLLVNLR 440 >UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bacillariophyta RepID=B7FQD9_PHATR Length = 1147 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 141/1110 (12%), Positives = 292/1110 (26%), Gaps = 218/1110 (19%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP----- 78 + L + +DSF F EQ G++ + F I + + +P Sbjct: 3 LRTLTAPHVDSFDYFWEQGLAR--GVQDIEPAEFNIVDPQ-----KLRDNPIAKPAKAPG 55 Query: 79 ----VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 +EC+ R + VY GEI + Sbjct: 56 ERSQKLLPRECRERKL-------------------------------VYAGEI-----SA 79 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 TF + R GV F P R L+ F Sbjct: 80 TF--------CYRMIQRRNGVDF--------------------PSRPVRLNKTFG----- 106 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETA 251 +P ++ + + L K + + L+ Sbjct: 107 --------DMPIMVMSKGCHLEGTTPKQLVKLKEEDNEFGGYFIVGGIERCVRLLQVPRR 158 Query: 252 SFDIEANGKVYVEKGRRIT--ARHIRQLEKDD-VKLIEVPVEYIAGKVVAKDYIDESTGE 308 + Y +G T +R + + I V Y+ ++ Sbjct: 159 NHATAIQRSSYKNRGNTYTDLGVAMRCARHNGDMSAITNTVHYLTTGGANLKFV------ 212 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 A E + + L +T + G + L A Sbjct: 213 ---AKKQEFLIPAILILRALSGSESQTELYERIVQGDQSNTFLVARAGLLLQDARARFGS 269 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 + P E F L + +G R +L + ++ + Sbjct: 270 LNTPDECLAFIGTR--FRRLSQKAETTSDVEIGHHIIRRFVLIHLPT--YRDKLECLLLM 325 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM 488 ++KL G VD+ D L N+ I G + + +++ L Sbjct: 326 LRKLYAFAAGDCGVDNADSLQNQEILLPGHLMCTFIKEKFEEFLSSLRLALLSDLRKDFA 385 Query: 489 PQDMI-----------------NAKPISAAVKEFFGSSQL--------------SQFMDQ 517 + I V+ F + + + ++ Sbjct: 386 RTSAKLTDAKYWGKMVDRHAGKASGGIGKKVQHFLSTGNIVSTSGLDLMQVSGYTIVAER 445 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 N L H R ++ G E VR + P +G +CP+ TP+G GL++ L++ Sbjct: 446 LNFLRYCAHFR---SVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHLAL 502 Query: 578 YAQTNEYGFL-----ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVE- 631 ++ Y + + S +G + + +G V Sbjct: 503 KSKVMAYPSRLDAKGMIDLDDLLLSLGVTPCGAGSRNGDGRIGSTHLHLPVSIDGRIVGG 562 Query: 632 -----------DLVTCRSKGESSLFSRDQVDYM-------DVSTQQVVSVGASLIPFLEH 673 L + + +V + + + A L+ + + Sbjct: 563 ASPSVLKIIAAHLRKLKVDNPPVVPPTLEVGLVPPGNPGAPYPGLYLFTCAARLVRPVLN 622 Query: 674 DDANRALMGANMQRQAVPTLRADKPL-VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 + +++ + D+ + G + + ++ + + D ++ Sbjct: 623 RASGHTEFIGPLEQGYMDIACLDEDIREGITTHQELDP---TNMLSLIANLTPFSDQNQS 679 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + + +M G ++L R + Q P + + G+ D Sbjct: 680 PRNMYQCQMGKQTMGTPAHSLPY--RPDNKLYRLQTPQAPVVQTSIHGEYKMD------- 730 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT------KLG 846 E G N VA + + G++ EDS+++++ V+ + + ++ Sbjct: 731 EYPNGTNAVVAVLSYTGFDMEDSVILNKSSVERGFAHASVYKTIDVSLQEEAKMTGASSS 790 Query: 847 PEEITADIPNV---GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 E++ N + L + G+ +G +T GD L V Sbjct: 791 GEDVRMKFSNKVKFDKVMYPSLQDDGLPQVGDCMTEGDPLYCVVDSISGM---------- 840 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ---AKKDL 960 D + + V V+ D + + I + K Sbjct: 841 -----------DRAAKHKEREIAYVQSVRALGNDSGKGADNKVSITLRFPRNPVLGDKFS 889 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR--DRWLELGLTDEEKQNQLEQLAEQY 1018 S Q + + + + + P + +G+ E + L + Sbjct: 890 SRHGQKGVLSILWPQEDMPFSESGISPDVIINPHAFPSRMTIGMMVESMAGKSGALHGNF 949 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + K G+ L Sbjct: 950 QNATPFSFHESGDKVSVDYFGEQLQAAGYN 979 Score = 324 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 97/501 (19%), Positives = 168/501 (33%), Gaps = 94/501 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEK--ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 TP P+ KL R + ++ +GT V V + G + + Sbjct: 695 TPAHSLPYRPDNKLYRLQTPQAPVVQTSIHGEYKMDEYPNGTNAVVAVLSYTGFDMEDSV 754 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRI-RAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 + + + + + +++ A V + +K+ D+ + L D Sbjct: 755 ILNKSSVERGFAHASVYKTIDVSLQEEAKMTGASSSGEDVRMKFSNKVKFDKVMYPSLQD 814 Query: 1005 E------------EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 + + + D E+++ + G+D G V + Sbjct: 815 DGLPQVGDCMTEGDPLYCVVDSISGMDRAAKHKEREIAYVQSVRALGNDSGKGADNKVSI 874 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 L R GDK + RHG KGV+S + P EDMP+ E+G D+++NP PS Sbjct: 875 TLRFPRNPVLGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVIINPHAFPS------- 927 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 IG + +M A GA + + FS E Sbjct: 928 --------RMTIGMMVESM----------------AGKSGALHGNFQNATPFSFHES--- 960 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 D E L+ G LY G +G + + +G +Y Sbjct: 961 --------------GDKVSVDYFGEQLQAAGYNYYGSEPLYSGVSGCVMQADLYIGVVYY 1006 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +L H+V DK R+TG + +T+QP+ G+ + GG R GEME +L ++G A+ LQ+ L Sbjct: 1007 QRLRHMVLDKYQVRATGPTNELTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLQDRLL 1066 Query: 1293 VKSDDVNGR-TKMYK------------------------------NIVDGNHQMEPGMPE 1321 SD +P Sbjct: 1067 NCSDKHVAYACCRCGDLLMSATERSTVQTTGQSANEAINKPKIRLYCRSAGSVEPIVLPY 1126 Query: 1322 SFNVLLKEIRSLGINIELEDE 1342 + L+ E+ ++ + + L + Sbjct: 1127 VYRYLVNELAAMNVKMRLAIK 1147 >UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 Tax=Eukaryota RepID=RPA2_DICDI Length = 1130 Score = 366 bits (940), Expect = 2e-99, Method: Composition-based stats. Identities = 132/1051 (12%), Positives = 298/1051 (28%), Gaps = 197/1051 (18%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI--QSYSGNSELQYVSYRLGEPVF 80 ++ L+ +DSF F + G++ + P+ + S ++++ +L P Sbjct: 4 ELKSLIQPHIDSFDFFTDH------GIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRP-- 55 Query: 81 DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVING 140 ++I E+E+ + Sbjct: 56 ---------------------------------TRNIVEKEIKL---------------- 66 Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 R G +++ LY + + +++ ++ Sbjct: 67 -----YPNESRETGTTYNAPFKGAIG----LYEVNEMDEMDDGTEVDYNKQEPTHTFEVD 117 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFDIEA 257 +LP + R + L + + + + L A+ + Sbjct: 118 LGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVAL 177 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 + K + +G T K+ + + V + + D T E Sbjct: 178 HRKAWTNRGPGYT--------KNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEF 229 Query: 318 SLDLLAKLSQSGHKRIETLFTNDL----------DHGPYISETLRVDPTNDRLSALVEIY 367 L L + ++ N + D +++ N + L I Sbjct: 230 FLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIG 289 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 R A + F F + +GR N+ + + + +I Sbjct: 290 SRFR---------ARTQFPPSFSNIK------IGRWFINQFVFVHLP--NYNDKYNLLIL 332 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE--------RAVKERL 479 +++KL + GK D+ID + + G + + L ++ +++ Sbjct: 333 MIQKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKK 392 Query: 480 SLGDLDTLMPQDMINAKP-ISAAVKEFFGSSQL--------------SQFMDQNNPLSEI 524 GD + +++ I+ F + L D+ N L I Sbjct: 393 KSGDKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFI 452 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 +H R ++ G +R + P +G CP+ TP+G GL+N LS Sbjct: 453 SHFR---SIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVD 509 Query: 585 -------GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE-----GHFVED 632 +T I +S + I L + V+ Sbjct: 510 AAQDPTVQKAQTLLPSFLAAHGMLPIDMVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKM 569 Query: 633 LVTCRSKG---------ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH-DDANRALMG 682 L RS G E S V+ S + + GA + + + L+G Sbjct: 570 LRYLRSMGNEPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLTSGQNELIG 629 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 Q + + + G S + + + D ++ + + +M Sbjct: 630 PQEQLYMEIAVVPHEVIKGVTTHIET---SPTAMFSLLANLTPFSDYNQSPRNMYQCQMA 686 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 G +++ R++ Q + + + G N + Sbjct: 687 KQTMGTPLHSYP--FRTDNKLYKVQNVQKPIVHTKNQFKFRC-------NDYPHGCNAVI 737 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD--TKLGPEEITADIPN-VGE 859 A + GY+ ED++++++ + + ++ ++ PN V + Sbjct: 738 AVISNTGYDMEDAMIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVD 797 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 +D G+ ++G + G+ + P Q+T + K Sbjct: 798 ELDKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGK----------------- 840 Query: 920 VPNGVSGTVIDVQ-VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA- 977 + DV+ +F +G +D + ++L+ + + + G + Sbjct: 841 ----EEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQL 896 Query: 978 -----VLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + P + + Sbjct: 897 WPEINMPFTESGMKPDVIINPNAFPSRMTIG 927 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 104/489 (21%), Positives = 168/489 (34%), Gaps = 86/489 (17%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA-----SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 TP + KL + +K + K P+G + VI V T +E Sbjct: 692 TPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNA-VIAVISNTGYDMEDA 750 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGL---FSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + E L+ GL + V E + D Sbjct: 751 MIINKSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKFIDTDGLPF 810 Query: 1000 LGLTDEEKQNQLEQLAEQYD----ELKHEFEKKLEAKRRKI--TQGDDLAPGVLKIVKVY 1053 +G + + + + E+ R I G P + + V Sbjct: 811 VGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVK 870 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L R GDK + RHG KGV+S++ P +MP+ E+G D+++NP PSR Sbjct: 871 LRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSR------- 923 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 IG + + A GA + D + F +E Sbjct: 924 --------MTIGMLVEIL----------------AGKAGAIHGKFQDATAFQFDE----- 954 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 + E L G ++Y G TG++FE + G Y Sbjct: 955 --------------NNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQ 1000 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 +L H+V DK R+ G + +T+QP+ G+ GG RFGEME +L A+GA++ L + L Sbjct: 1001 RLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMK 1060 Query: 1294 KSD----DVNGRTKM-----------------YKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 SD V K+ + +P F L+ E+ + Sbjct: 1061 SSDFAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAA 1120 Query: 1333 LGINIELED 1341 + I ++L+ Sbjct: 1121 VNITMKLQV 1129 >UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT n=1 Tax=Hydra magnipapillata RepID=UPI0001924CDE Length = 1117 Score = 366 bits (938), Expect = 4e-99, Method: Composition-based stats. Identities = 147/1200 (12%), Positives = 333/1200 (27%), Gaps = 189/1200 (15%) Query: 204 LPATIILRALNYT---TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 +PA + + N E + ++ + I + ++ + + + I+ N Sbjct: 41 IPAMVRSKYCNLNIYKEETRDECKYDPGGYFIINGSEKVVICQDSMIKNHPMVFIKKNSN 100 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 V + + ++ + + ++ V + E ++ A S Sbjct: 101 V---SNKVVQVNSKSNDPTSMMQSVLIKIKKDGIMTVKISVLYEVNVMILFRALGIESDR 157 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYIS-ETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 + ++ + + ++ + + A+ + M+ + T Sbjct: 158 DIIEICAYDKTDYHMIELLRVSLETCVNDNDDQEHKIQTQEEAIDLLITKMKVLKNYTNT 217 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 + FE ++ + ++ KL+ + G+ Sbjct: 218 NLSTRFEQKKLHLLDLLKTSFLPHIE------GSPSNPYREKAYYLGYIINKLLKVELGR 271 Query: 440 GEVDDIDHLGNRRIRSVGEMAEN----QFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 VD+ D +RI ++ E+ E Q++ + + R+ D D P ++I+ Sbjct: 272 APVDNRDAYTKKRIDNIRELLEEIMIQQYKNNMNECSKQFTARMG-DDGDAADPYNVIHQ 330 Query: 496 KPISAAVKEFFGS---SQLS------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 + F S S Q + +N+ + +T RI + + Sbjct: 331 FKAGTFEQGFKASIMIGNWSRKKGVSQMLQRNSYMQLLTSLSRIDS--QSSTQSAGRLTK 388 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSV--YAQTNEYGFLETPYRKVTDGVVTDEIH 604 R V P+ +C + TPE NIGL+ LS+ + E + + +I Sbjct: 389 PRHVDPSTVPFLCVVSTPEHGNIGLVKHLSMIGSITIGDKDNTEIVKEFIMTHPLVKDIS 448 Query: 605 YLSAIEEGNYVIAQANSNLDEEG----------------HFVEDLVTCRSKGESSLFSRD 648 + E N N + F D + E + Sbjct: 449 EVPVYELKNMFKVFLNGEWLKVVENSYDVGDNYYDNPVIKFYSDAKVKKISCEFNPQMTS 508 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 V + + + L + + + +M + D + E + Sbjct: 509 VVFDYKDNEIRFNTDSGRLYRPVIRINGDNEMMLTKEMIDKISLKATDVGKISDWDEFYI 568 Query: 709 -AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 ++ + + +++ + + + R + + Sbjct: 569 QYPYPIEFIDSEEQPFMLIAEDRKVLNFERKKIIDSEKHVFKGEESKIVNRFDDKFFL-- 626 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 R D + PS L E+A +P+ N + ++ Sbjct: 627 -----------RYDSIEIHPSVLLSEIATN-------IPFCEKNCSTRNIYQYAQGKQGM 668 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 + N + + D I+ G+ V Sbjct: 669 GVYCTAYRSRTDL---SFILYNPEVPVVNTRTSKYTYTD---ILPPGSN--------AVV 714 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 + E+ ++ + + + SL + + ++ + Sbjct: 715 AIACYSGYNQEDSIVFNMTSLQRGLFRSMSLYKY-----------ISSITKNQETSGNDK 763 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + + L + + G V K+ + D + Sbjct: 764 FMKPPPDKMAGTKNGNYDKLNEHGYIPEETQITKGDVIFGKVTPINDTTNTGRIFKDSSE 823 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 Q + D + K + +R + GD Sbjct: 824 QYK-----------------SYADGVIDRVYTDIKNQDGYETRKALVRSERFPRIGD--- 863 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 SR G K Sbjct: 864 ----------------------------------KFCSR-----------------HGQK 872 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 + + ++ R + +S E + KGM + F Sbjct: 873 GTIGISLRGIDMPFTKWGIRPDIIVNPNAIPSRMSIAQLCECLFGKVGALKGMNMDGTAF 932 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 + +K++L+ + LY+G G+ + + +G Y +L H+V DK+HAR Sbjct: 933 EDYDIDAMKDMLESLGYQRECEEYLYNGMLGKMIKHMIFIGPTYYQRLRHMVQDKIHARG 992 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK 1303 G +++T+Q G+++ GG R GEME A+ +G A L+E + +D V G Sbjct: 993 RGPVTILTRQAPEGRSREGGLRLGEMERDAVITHGIAKFLKERMLDCADAYSTYVCGICG 1052 Query: 1304 ---------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P +F ++L+E+ ++ I + + Sbjct: 1053 MFARREDSRFSEPTPGPDDVYYCPKCNNYTDIHQIMIPYAFKLMLQELMAMNIAPRIRVQ 1112 Score = 51.4 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 71/252 (28%), Gaps = 18/252 (7%) Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL---YNARIIPYRGSWLDFE 187 G F+ING+E+V++ Q K ++ S KV+ + + + Sbjct: 66 DPGGYFIINGSEKVVICQDSMIKNHPMVFIKKNSNVSNKVVQVNSKSNDPTSMMQSVLIK 125 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTT--EQILDLFFEKVIFEIRDN-------KLQ 238 + V+I ++ I+ RAL + + I ++K + + + + Sbjct: 126 IKKDGIMTVKISVLYEVNVMILFRALGIESDRDIIEICAYDKTDYHMIELLRVSLETCVN 185 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 E K+ V K T R +K L + ++ Sbjct: 186 DNDDQEHKIQTQEEAIDLLITKMKVLKNYTNTNLSTRFEQKKLHLLDLLKTSFLP----- 240 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + A + + G ++ I E L Sbjct: 241 -HIEGSPSNPYREKAYYLGYIINKLLKVELGRAPVDNRDAYTKKRIDNIRELLEEIMIQQ 299 Query: 359 RLSALVEIYRMM 370 + + E + Sbjct: 300 YKNNMNECSKQF 311 >UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_CHLRE Length = 626 Score = 366 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 158/496 (31%), Positives = 245/496 (49%), Gaps = 73/496 (14%) Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 V G V GD+L + G +L ++ A + + +D+ L ++ ++ Sbjct: 116 VKEGDWVEVGDLLADSASSIG-GELAIGHNIIVAYMPWEGYNYEDAIL-----INERLVY 169 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVEA 986 ++T +E+ + + ++ +Q +++ + E++ L+ ++I + + G + Sbjct: 170 EDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGIAKIGSWVEEGDILV 229 Query: 987 EKLDK------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 K+ P+ + L + + L + + A+++ Sbjct: 230 GKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVININILARQKIQINTK 289 Query: 1041 DLAPGV-----------------LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 G + +YLA KR++Q GDKMAGRHGNKG++S+I P + Sbjct: 290 SKNTGKGSKPPRASKAQNTMVSQPSYIHIYLAEKRKMQVGDKMAGRHGNKGIVSRILPRQ 349 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP+ +G VDIVLNPLGVPSRMN+GQI E LG+A + +G+ + Sbjct: 350 DMPFLPDGAAVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMY------ 403 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 GAD + LS + + L D Sbjct: 404 --------GADASRSFVLSKLYEARKKTGLK-------------------------WLLD 430 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G+IRL+DGR E F++ VTVG Y+LKL H+VDDKMHARSTG YSLVTQQPL G++ Sbjct: 431 PNHPGKIRLFDGRNSECFDQTVTVGIAYVLKLVHMVDDKMHARSTGPYSLVTQQPLRGRS 490 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESF 1323 + GGQR GEMEVWA+E YGAA+ L EMLT+KSDD+ GR ++KN+++ G PESF Sbjct: 491 KQGGQRLGEMEVWAIEGYGAAFVLSEMLTIKSDDMTGRQNLWKNLIENKEIS-LGSPESF 549 Query: 1324 NVLLKEIRSLGINIEL 1339 VL+ E+++L ++I L Sbjct: 550 KVLICELQALCLDIGL 565 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 105/317 (33%), Positives = 158/317 (49%), Gaps = 24/317 (7%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ P V G+ VE GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 96 YNLETYHRSNQDTCLIHKPAVKEGDWVEVGDLLADSASSIGGELAIGHNIIVAYMPWEGY 155 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T+IHI+ +++TKLG E+IT +IP++ E + LD++GI Sbjct: 156 NYEDAILINERLVYEDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGI 215 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGK+TP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 216 AKIGSWVEEGDILVGKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVIN 275 Query: 931 VQVFTRDGVEKDKRALEI----------------------EEMQLKQAKKDLSEELQILE 968 + + R ++ + ++ + L + +K + Sbjct: 276 INILARQKIQINTKSKNTGKGSKPPRASKAQNTMVSQPSYIHIYLAEKRKMQVGDKMAGR 335 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKK 1028 G + +L + D D L L + N + + Sbjct: 336 HGNKGIVSRILPRQDMPF-LPDGAAVDIVLN-PLGVPSRMNVGQIYECLLGLAGRYLGEH 393 Query: 1029 LEAKRRKITQGDDLAPG 1045 + G D + Sbjct: 394 YKIPPFDEMYGADASRS 410 >UniRef50_A7SSE2 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis RepID=A7SSE2_NEMVE Length = 913 Score = 364 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 101/778 (12%), Positives = 226/778 (29%), Gaps = 97/778 (12%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + +L + + + + + +R + Sbjct: 93 IPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLAIIRP 152 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 R + V++ V + A + D + I + ++ Sbjct: 153 SWKGR-----GSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVF 207 Query: 324 KLSQSGHKRIETLFTNDLDHGP----------YISETLRVDPTNDRLSALVEIYRMMRPG 373 L + + ++ + + T + + ++ S L I R Sbjct: 208 ILKALMNVTDQHIYRELIKAEENNTFWKDCVAMMLRTAQEEGAVNQKSVLEYIGLRFR-- 265 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 D + AV + + + + + +I + +KL Sbjct: 266 -------------VKMRLPDWFSDEAVAQYLIQQCICIH--LDTNADKFNLLILMTRKLY 310 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI 493 + K + D N+ + G + ++ + Sbjct: 311 ALALEKCCAESADSPMNQEVLLGGHLYLMVLKMEYF----------------------LA 348 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 IS + S + D+ N ++H R + G + VR + P Sbjct: 349 TGNLISKSGLALQQISGFTVVADRLNYFRFLSHFR---CIHRGAFFSQMRTTSVRKLLPE 405 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGN 613 +G +CP+ TP+G GL+N L+ Q L ++ + + + N Sbjct: 406 AWGFLCPVHTPDGAPCGLLNHLAAGCQVVNVVPLVAHMLRLLCTMGMIPVDAPVPGDYKN 465 Query: 614 YVIAQANSNL------DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV-------STQQV 660 Y + + D L + GE + ++ + + + Sbjct: 466 YYPVVMDGRVLGSVDRDLAPTLANRLRIMKVLGEERVPQFLEICLVPITKVASQYPGLFI 525 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL---VGTGMERAVAVDSGVTAV 717 S A ++ + + N+ M + ++ + + L V T ME + Sbjct: 526 FSSPARMMRPVLNLAVNKIEMIGSFEQVYMDIAIVQEELHEGVTTHMELK-----PTAML 580 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 + + Y D ++ + + +M G ++ R++ Q P L P Sbjct: 581 SAIASMTPYSDFNQSPRNMYQCQMGKQTMGTPVHAFQ--HRTDNKLYRIQTPQSPLVRPA 638 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 + D E LG N VA + + GY+ ED++++++ + + Sbjct: 639 SHDFYIMD-------EYPLGTNAIVAVISYTGYDMEDAMVLNKASYERGFAHGSIYKAQF 691 Query: 838 CVSR---DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV-TPKGET 893 + + +LD G +GA ++ GD + T GE Sbjct: 692 VNLEPKSQDRTSSSNLQFGTLPDDPRIDGRLDADGFPPLGAHLSTGDPYYSYIDTNTGEA 751 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV-----IDVQVFTRDGVEKDKRAL 946 + L I ++ + D +G G ++ F+ G+ D Sbjct: 752 VVKKYSNLEAGIIDDRNPIIGDK-FSSRHGQKGICSQKWPVENMPFSESGMTPDIIFN 808 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 81/279 (29%), Gaps = 84/279 (30%) Query: 6 TEKKRIRKDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 + K K++G+ + L+ ++SF +E+ Sbjct: 14 SLKNLTLKNYGRLSDTQKQSIQDLVRPHIESFNFMLEEGLPLA----------------- 56 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +C+ +G TY + L+V L+ I T Sbjct: 57 -------------------AQCREKGSTYCSKLQVTLQWKIDNVPQGSVTK--------V 89 Query: 124 MGEIPLMTDNG------------------------TFVINGTERVIVSQLHRSPGVFFDS 159 + IPLM + F++NG E++I + + + Sbjct: 90 IAAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRN-YPLA 148 Query: 160 DKGKTHSSGKVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRR---KLPATII 209 + Y + R + + N+ + I R+ +P I Sbjct: 149 IIRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVFI 208 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 L+AL T+ + ++I +N + V LR Sbjct: 209 LKALMNVTD---QHIYRELIKAEENNTFWKDCVAMMLRT 244 >UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis RepID=A9VCU6_MONBE Length = 1136 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 123/919 (13%), Positives = 261/919 (28%), Gaps = 125/919 (13%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW-------LDFEFDPKDN 193 + I + + + + S+ LY A R ++ ++ E + + N Sbjct: 78 QNKTISLSIAKCRLEQPTVSRKEGFSTANALYPAECRQRRVTYKGDFYLTVNIEVEGQPN 137 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 + +LP I+ A +L +K + F Sbjct: 138 AWQVERYVGQLPIMIMSNACRLNGLSPRELVMKKEEAQEMGG----------------YF 181 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 I N K+ I V Y + T + Sbjct: 182 IINGNEKIVRMLLMPRRNHPICLDRPSYVNRGPGYSSYGVQMRCVRPDQSAQTVVVHYKN 241 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS-ETLRVDPTNDRLSALVEIY-RMMR 371 + +L + Q I L I + +R D +N L VEI R Sbjct: 242 DGTCTLGFSYRKQQYLIPAILLLRALSGVSDRQIFMDIVRGDMSNSFLVERVEIMLRQYT 301 Query: 372 PGEPPTREAAESLFENLF-----FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 +++A + NLF + D+ A + F R LL ++ Sbjct: 302 RERLFSQQACLAYLGNLFKVILNLHPETSDVEA-AHILFKRVLLVHIAPNDFQAKYRVLV 360 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVKERLSLG 482 +++++ + G + D+ D + + G + + Q LV +++ V+ L +G Sbjct: 361 GLIRRVYSLAAGSTQPDNADSQMLQELLLPGHIYCAFVKEQMSEYLVAMQKLVQTDLRMG 420 Query: 483 DLDTLMPQDMINAKP------ISAAVKEFFGSSQL--------------SQFMDQNNPLS 522 + + + I + ++ F + L + D+ N L Sbjct: 421 KTVDVSNTNYLQTDVMRRCPDIGSKLEYFMSTGNLNSPTALDQMQVTGFTIVADKLNFLR 480 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++H R + G + VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 481 YLSHFR---CVHRGAYFSQMKTTAVRKLLPEAWGFLCPVHTPDGAPCGLLNHLARHCLPP 537 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIE-----EGNYVIAQANSNLDEEGHFVEDLVTCR 637 + G+ + +++ L++ F E L + Sbjct: 538 TEPVDISSLPPTLLGLGMIAVSEQPHFHCLDVLLDGHLVGFL--ALEQAPKFAEQLRILK 595 Query: 638 SKGESSLFSRDQVDYM------DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 + + + + ++ Y+ + S A L+ + + + ++ + Sbjct: 596 IRDDERVPNTLEIAYVAPRAAGQFPGLYLFSTPARLLRPVRNLRMKSTEFVGSFEQVYLN 655 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 K V E + ++ + D ++ + + +M G+ Sbjct: 656 VAVDPKEFVS--GETTHMELTKHGFLSIVASFTPFSDFNQSPRNMYQCQMGKQTMGVPGQ 713 Query: 752 NLTKYTRSNQNTCIN---QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 + R++ Q P V E G + +G N V + + Sbjct: 714 AIKY--RADNKLYSLNSGQTPLVRPRAYNEYG----------VDNFPVGNNAIVCVIAYT 761 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVS--RDTKLGPEEITADIPNVGEAA--LSK 864 GY+ ED++++++ V+ + + +P A + K Sbjct: 762 GYDMEDAMILNKGSVERGFMHARVLATKVIDLTEKTKSRVCHYYFGVLPKDRSANLKMEK 821 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 LD G+ +GA + GD L + T + G Sbjct: 822 LDADGLPRVGAHIKEGDALYSYIDGSTNESRTE----------------------IYRGE 859 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 + K S Q + + Sbjct: 860 PAIIDRKVTI-----------RLSINRNPIIGDKFASRHGQKGILSQLWPTADMPFSESG 908 Query: 985 EAEKLDKLPRDRWLELGLT 1003 + P + + Sbjct: 909 IIPDILFNPHGFPSRMTIG 927 Score = 336 bits (860), Expect = 4e-90, Method: Composition-based stats. Identities = 110/503 (21%), Positives = 185/503 (36%), Gaps = 96/503 (19%) Query: 883 LVGKVTPKGETQLTPEE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFT 935 +V TP + +P ++ + G +K D+ L N ++ + + Sbjct: 681 IVASFTPFSDFNQSPRNMYQCQMGKQTMGVPGQAIKYRADNKLYSLNSGQTPLVRPRAYN 740 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEEL--QILEAGLFSRIRAVLVAGGVEAEKLDK-- 991 GV+ + D+ + + VL ++ + K Sbjct: 741 EYGVDNFPVGNNAIVCVIAYTGYDMEDAMILNKGSVERGFMHARVLATKVIDLTEKTKSR 800 Query: 992 --------LPRDRWLELGLT--DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 LP+DR L + D + ++ ++ D L + R +I +G+ Sbjct: 801 VCHYYFGVLPKDRSANLKMEKLDADGLPRVGAHIKEGDALYSYIDGSTNESRTEIYRGE- 859 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 + + V + L++ R GDK A RHG KG++S++ P DMP+ E+G DI+ NP Sbjct: 860 -PAIIDRKVTIRLSINRNPIIGDKFASRHGQKGILSQLWPTADMPFSESGIIPDILFNPH 918 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 G PS IG I +M + A D Sbjct: 919 GFPS---------------RMTIGMLIESMAGKSA----------------ALHGVAHDA 947 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 + F E + E L+ G R+Y G TGE+F Sbjct: 948 TPFMFNE-------------------NERAVDYFGEQLRTAGYNYHGHERMYSGITGEEF 988 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 E + +G ++ +L H+V DK R+ G + +T+QP+ G+ + GG RFGEME AL + Sbjct: 989 EVDIFIGNVFYQRLRHMVSDKFQVRTQGPVNSLTRQPVKGRKKNGGIRFGEMERDALLGH 1048 Query: 1282 GAAYTLQEMLTVKSD----DVNGRTKM-------------------YKNIVDGNHQMEPG 1318 G A+ LQ+ L SD DV + + DG + Sbjct: 1049 GTAFLLQDRLFNCSDRSEVDVCRKCGSLLSPYSSEKTAANRIRVLRCRGCSDGGEVVRVN 1108 Query: 1319 MPESFNVLLKEIRSLGINIELED 1341 +P F L E+ ++ I + L+ Sbjct: 1109 LPYVFRYLTAELSAMNIRLSLDV 1131 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 91/273 (33%), Gaps = 65/273 (23%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS--YSGNSELQYVSYRLGEPV- 79 + + +DSF ++ GLE A + P+ + L RL +P Sbjct: 43 KLKTATAPHVDSFNYMVKH------GLEQAVADLDPLTFVAQNKTISLSIAKCRLEQPTV 96 Query: 80 -----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 EC+ R VTY + + + + + + Y+G++P Sbjct: 97 SRKEGFSTANALYPAECRQRRVTYKGDFYLTVNIEVEGQPNAWQVER-------YVGQLP 149 Query: 129 LMTDNG------------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M + F+ING E+++ L D+ + Sbjct: 150 IMIMSNACRLNGLSPRELVMKKEEAQEMGGYFIINGNEKIVRMLLMPRRNHPICLDR-PS 208 Query: 165 HSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRRK---LPATIILRALN 214 + + Y++ + R D + + R++ +PA ++LRAL Sbjct: 209 YVNRGPGYSSYGVQMRCVRPDQSAQTVVVHYKNDGTCTLGFSYRKQQYLIPAILLLRAL- 267 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 + +F + V ++ + +E V LR Sbjct: 268 -SGVSDRQIFMDIVRGDMSN-SFLVERVEIMLR 298 >UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=Firmicutes RepID=D0V9L6_9BACI Length = 481 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 180/529 (34%), Positives = 279/529 (52%), Gaps = 68/529 (12%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 10 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V+E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 64 LEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F K +GK + A +IP RG+WL++E Sbjct: 117 PIMTDTGTFIINGAERVIVSQLVRSPSVYFSG---KVDKNGKKGFTATVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKV--------IFEIRDNKLQ 238 D KD ++VRIDR RKLP T++LRAL + + ++ILDL E +K Sbjct: 174 TDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLRNTLDKDNTENSDKAL 233 Query: 239 MELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 +E+ GE + + + + + R A R + + + Sbjct: 234 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKL----HIKNRLFNQR 289 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ +D TGE++ L L K L++G + Sbjct: 290 LAETLVDPETGEILAEKGQILDRRTLDK------------VLPYLENGIGFRKLYPNGGV 337 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 +++ ++ P + + N E Sbjct: 338 V-EDEVMLQSIKIYAPTDAEGEQT------------------------INVIGNAYIEEA 372 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 ++ DII + ++ +G G+ DDIDHLGNRR+RSV E+ +NQFR+GL R+ER V+ Sbjct: 373 IKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVCELLQNQFRIGLSRMERVVR 432 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 ER+S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+T Sbjct: 433 ERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 481 >UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=B7XI25_ENTBH Length = 1107 Score = 356 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 130/954 (13%), Positives = 290/954 (30%), Gaps = 134/954 (14%) Query: 100 LRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDS 159 + I E + ++ Y+ + + + T + N E++I Q R + + Sbjct: 29 IEKEIKEIVQANDIIDSDIDRNFYLRYLNIRVEKPTMIENMVEQIIYPQECRIRDITYAG 88 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTE 218 + ++D E+ + ++ + K+P I + TT Sbjct: 89 NI---------------------YVDIEYIKNKEVIIKKNISMGKMPIMIRSSKCHLTTH 127 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 + K+I R L E + F I+ KV + ++ R I ++ Sbjct: 128 ----MLNSKIIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVIHIQEQQSKNRIIIEMG 183 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 K+ + + I K + +E + ++ L G Sbjct: 184 KNGL-YTSMTSSSIKHKNKTNVIYKNDKFYIQNTIFIE-DVPIVLVLKTLGL-------- 233 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 + I + + + E+Y E + + Sbjct: 234 ---NTDEEIVSYIGKEGVELMELSFGEVYEKDIYTETDALIELSKFIKLKSDDNKEIKVK 290 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 ++ K ++ ++ + + +++KLI + + DD D+LGN+R G+ Sbjct: 291 SILAEKLFPNIKIDDDLKN---KGICLCLMIRKLILAKQNLLKPDDKDYLGNKRFELAGQ 347 Query: 459 MAENQFRVGLVRVERAVKERLS-------LGDLDTLMPQDMINAKPISAAVKEFFGSSQL 511 + F + +K+ + + + + I+ + S Sbjct: 348 LLSILFEDTFKKFNFELKKSIDKILSKRIRTNEFDALTFFNLQTGSITTTLSRAISSGNW 407 Query: 512 --SQF-MDQNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIET 563 +F M+++ +T I+ALG + R R +HP+ +G CP +T Sbjct: 408 NLKRFKMERSGVTHVLTRYSYITALGMMTKINSHFEKTRKVSGPRSLHPSSWGMFCPADT 467 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL--SAIEEGNYVIAQANS 621 PEG + GL+ +L++ + + + + + ++ + S N + N Sbjct: 468 PEGESCGLVKNLALLTEISTE-SDSDIIKNILQTLGVIKLKFCQESEFYAKNKFMVFING 526 Query: 622 NL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 L + + R +G+ + F + ++ + + + + L N Sbjct: 527 ELFGLTSNIEYLCCAIRKIRREGKINKFVSIFHNKLENA-IYISTDNGRICRPLIIIKKN 585 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG------------------------ 713 + ++ L+ G+ V V+ Sbjct: 586 SNFFTNYQFQCNKIKYKSFNDLLLEGLIEYVDVNEENDCLIALHKSNINNLNIENYTHLE 645 Query: 714 ---VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 + ++ G++ + ++ + M G N+ K R + Sbjct: 646 IADYSILSLIAGLIPFPHHNQSPRNTYQCAMGKQAIGHIGTNIKK--RFDLLMLQLNY-- 701 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 P+ +L ++ G N VA M ++GY+ ED+I+V++ ++ Sbjct: 702 --TQRPLSCSKILDIN---KYNKIPAGINAMVAVMSYSGYDIEDAIIVNKDSIERGFMRV 756 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + + G E + I+ +G V GDIL+ KV+P Sbjct: 757 EVYKTIKIEFERFTNG----------KTEEIYIVNGKEQIIEVGTHVMDGDILITKVSPI 806 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 + T + K ID + ++ +K + E Sbjct: 807 DKKLKTVKYKGHPGY-----------------------IDTIILSKGDDDKILKIKVRET 843 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 ++ K S Q GL + + P + + Sbjct: 844 RCVEIGDKFSSRHGQKGVVGLIVPQVDLPFNEYGVCPDIIMNPHGFPSRMTVGK 897 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 96/438 (21%), Positives = 174/438 (39%), Gaps = 57/438 (13%) Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 + ++P G++ V V ++ +E + + +E + Sbjct: 715 NKYNKIPAGINAMVA-VMSYSGYDIEDAIIVNK----------DSIERGFMRVEVYKTIK 763 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL--AEQYDELKHEFEKKLEAK 1032 I G E +++ +E+G + + ++ ++ + Sbjct: 764 IEFERFTNGKTEEIYIVNGKEQIIEVGTHVMDGDILITKVSPIDKKLKTVKYKGHPGYID 823 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 +++GDD KI+K+ + R ++ GDK + RHG KGV+ I P D+P++E G Sbjct: 824 TIILSKGDD-----DKILKIKVRETRCVEIGDKFSSRHGQKGVVGLIVPQVDLPFNEYGV 878 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLG 1152 DI++NP G PSRM +G+ILE G+ +A + + I + Sbjct: 879 CPDIIMNPHGFPSRMTVGKILELIGSKVTCLTGEYTDATPFENNTADNDLKTIFNTTNQE 938 Query: 1153 ADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRL 1212 + + + + ++L SG+ Sbjct: 939 PLHK-------------------------------EHRQTELLCQILIDHGYSYSGKDVF 967 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 G TGEQFE + G ++ +L H+V DK+H RS G +++T+QP G+++ GG R GE Sbjct: 968 TSGITGEQFEAYIFFGPIFYQRLKHMVADKIHCRSRGPRAVLTRQPTEGRSKDGGLRLGE 1027 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV--------DGNHQMEPGMPESFN 1324 ME L YGA L E L SD+ + I+ + MP + Sbjct: 1028 MERDCLIGYGANSLLNERLMHCSDEFDAFICETCGIICYKERCYWCSKKPIIVKMPYACK 1087 Query: 1325 VLLKEIRSLGINIELEDE 1342 +L +E+ ++ I ++ E Sbjct: 1088 LLFQEMMAMNILPKIILE 1105 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 54/410 (13%), Positives = 121/410 (29%), Gaps = 74/410 (18%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 +RKD L+ ++SF FIE++ + S N L+Y Sbjct: 1 MRKDGDLVDLFFADKNLVRQHIESFNYFIEKEIKEIVQANDIIDS-----DIDRNFYLRY 55 Query: 71 VSYRLGEPV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++ R+ +P QEC+IR +TY+ + V + + + I ++ Sbjct: 56 LNIRVEKPTMIENMVEQIIYPQECRIRDITYAGNIYVDIEYIKNKEV--------IIKKN 107 Query: 122 VYMGEIPLMTDNG------------------------------------TFVINGTERVI 145 + MG++P+M + F+I G E+VI Sbjct: 108 ISMGKMPIMIRSSKCHLTTHMLNSKIIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVI 167 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP 205 Q +S + + + + + + +P Sbjct: 168 HIQEQQSKNRIIIEMGKNGLYTSMTSSSIK----HKNKTNVIYKNDKFYIQNTIFIEDVP 223 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 ++L+ L T++ + + K E+ + E+ + + ET + Sbjct: 224 IVLVLKTLGLNTDEEIVSYIGKEGVELMELSFG-EVYEKDIYTETDALI----------- 271 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 + K+ + + + D ++ + + L+ L K Sbjct: 272 ELSKFIKLKSDDNKEIKVKSILAEKLFPNIKIDDDLKNKGICLCLMIRKLILAKQNLLKP 331 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + + +T + + S + + +R E Sbjct: 332 DDKDYLGNKRFELAGQLLSILFEDTFKKFNFELKKSIDKILSKRIRTNEF 381 >UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta RepID=Q9C8S4_ARATH Length = 1114 Score = 356 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 103/597 (17%), Positives = 178/597 (29%), Gaps = 131/597 (21%) Query: 782 VLADGPSTDLGELALGQNMRVA-FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 ++ P+T G VA PW+ +N + ++ ++ + + Sbjct: 604 FISTFPATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQ 663 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + L T P V T + +E Sbjct: 664 KIYHLQ----TPQSPVVRTKTY------------------------------TTYSIDEN 689 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 P G + V + D + E + + Sbjct: 690 --------------------PTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQ 729 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 +E + + + + + ++ D +G + E ++ Sbjct: 730 TENIDLSDQNSRFDSGSKSFRRSTNKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNK 789 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 +H K + D + + + R GDK + RHG KGV S++ Sbjct: 790 TRHMKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLW 849 Query: 1081 PIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 P DMP++ G D+++NP PSRM I +LE+ G ++A + Sbjct: 850 PDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKK 909 Query: 1140 KLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL 1199 E ++ L ++ +L Sbjct: 910 TNGEEESKSSLL----------------------------------------VDDLGSML 929 Query: 1200 KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1259 K G LY G G + + + +G +Y +L H+V DK RSTG +T QP+ Sbjct: 930 KEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPI 989 Query: 1260 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK---------------- 1303 G+ + GG RFGEME +L A+GA+Y L + L SD Sbjct: 990 KGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQ 1049 Query: 1304 -------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + MP F L E+ S+ I + L+ Sbjct: 1050 KKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQL 1106 Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 115/944 (12%), Positives = 236/944 (25%), Gaps = 135/944 (14%) Query: 172 YNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK--LPATIILRALNYTTEQILDLFFEKVI 229 I Y G+++ ++ V D+ P ++ + + L K Sbjct: 40 CRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCKES 99 Query: 230 FEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 F + +V+ + E Sbjct: 100 TSEMGG----------------YFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYS 143 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 +D T +L N + + L I E Sbjct: 144 SKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYE 203 Query: 350 TLRV------------DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 +L T I +R TRE F L Sbjct: 204 SLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQP----VL 259 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 V L + + +I +++KL + + D+ D L N+ I G Sbjct: 260 DGVAEAVLRDYLFVH--LDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPG 317 Query: 458 E----MAENQFRVGLVRVERAVKERLSLGDLD-----TLMPQDMINAKP---ISAAVKEF 505 + + L + + +K+ L + + +IN P I +++ Sbjct: 318 HVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETL 377 Query: 506 FGSS--------------QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVH 551 + + ++ N L ++ R A+ G VR + Sbjct: 378 LKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFR---AVHRGASFAGLRTTTVRKLL 434 Query: 552 PTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV------------ 599 P +G +CP+ TP+G GL+N ++ ++ + R Sbjct: 435 PESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMV 494 Query: 600 ---TDEIHYLSAIEEGNYVIAQANSNLDEE--GHFVEDLVTCRSKGESSLFSRDQVDYMD 654 + + Q L V + + + S + +V Y+ Sbjct: 495 PSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVP 554 Query: 655 ------VSTQQVVSVGASLIPFLEHDD--ANRALMGANMQRQAVPTLRADKPLVGTGMER 706 + S A I +++ ++ + ++ A P E Sbjct: 555 TSMGGSYPGLYLASCPARFIRPVKNISIPSDNIELIGPFEQVANPINIIFISTFPATHEE 614 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 ++ + + D ++ + + +M L R++Q Sbjct: 615 I----HPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQ--FRADQKIYHL 668 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P + D E G N VA + G++ ED++++++ V+ Sbjct: 669 QTPQSPVVRTKTYTTYSID-------ENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERG 721 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK-LDESGIVYIGAEVTGGDILVG 885 Q D + + A +D G+ +G ++ + Sbjct: 722 MCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTNKAEHFRIDADGLPSVGQKLYPDEPYCS 781 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV-FTRDGVEKDKR 944 I+ E + + + + V V V V + Sbjct: 782 -------------------IYDEVTNKTRHMKRKGTDPV--IVDFVSVDMKSKKHPQRAN 820 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-GVEAEKLDKLPRDRWLELGLT 1003 K S Q + G L P + + Sbjct: 821 IRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIA 880 Query: 1004 --DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 E + L + K T G++ + Sbjct: 881 MLLESIAAKGGSLH------GKFVDATPFRDAVKKTNGEEESKS 918 >UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=B9FCT0_ORYSJ Length = 1185 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 153/1072 (14%), Positives = 307/1072 (28%), Gaps = 225/1072 (20%) Query: 6 TEKKRIRKDFGKRPQVLDVP-----------------YLLSIQLDSFQKFIEQDPEGQYG 48 + K R + + P + +P L+S Q++S+ +F+ G Sbjct: 62 DDGKGKRDSYAQIPVDMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSH------G 115 Query: 49 LEAAFRSVFPIQ---SYSGN---------SELQYVSYRLGEPVFDVQECQIRGVTYSAPL 96 L+ F S+ + SY + + +++ +L EPVF C Sbjct: 116 LQELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSHGC----------- 164 Query: 97 RVKLRLVIYEREAPEGTVKDIKEQEVYM----GEIPLMTDNGTFVINGTERVIVSQLHRS 152 DI EQ + + + MT + + +V + Sbjct: 165 -------------------DIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVYSME---- 201 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRA 212 + K Y II + ++ I R LP ++ Sbjct: 202 ------KSDKAKTGNDKFGYKRNII-------------NETYYINIGR---LPVMVMSNL 239 Query: 213 LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR 272 + D F+ + + ++ + E+ + V R Sbjct: 240 CWLHKLKESDCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRI 299 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 +I+ ++ + + D S G++I + + ++ + G Sbjct: 300 YIKLIDSANNE-------------------DASGGKIISISFLYANMPIWLMFFALGISS 340 Query: 333 IETLF--TNDLDHGPYISETL---------RVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 + +F N D + T+ + A + +++ + P E Sbjct: 341 DKDIFDVINMEDCDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPF 400 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 + F + ++K L+ GK + Sbjct: 401 DDYIAKYLFP----------------------SISGNRNKALFLGYMVKCLLMAFTGKRK 438 Query: 442 VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL---GDLDTLMPQDMINAKPI 498 D+ D N+R+ GE+ + R + ER + + L + + ++A I Sbjct: 439 CDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDASII 498 Query: 499 SAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + + F + + + NPL I+ R+ + Sbjct: 499 TNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRK----TRQRVAYAGKAG 554 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 + R +P+++G++C + TP+G N GL+ +L+V A + P +++H Sbjct: 555 DARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAP--PLIDRFISCGMNKLHE 612 Query: 606 LSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 + E N + + FV L R G + D +V Sbjct: 613 IPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQ-REVRVF 671 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 S ++ L + + + L + + G+E + S Sbjct: 672 SDAGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFE 731 Query: 722 G--VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 V ++ N + G ++ T + E Sbjct: 732 SEEEAPMVKMNKAEDVFN----VKRKIGGEVSGY---------THLIADCI----GRSEY 774 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 D E GQN VA G+N EDS++++ ++ F T H + Sbjct: 775 TFGRKD--DFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAE 832 Query: 840 SRDTKL--------GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 + ++I + LD+ G+ Y+GA + GDI++GKV+ G Sbjct: 833 VENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESG 892 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 E D S+++ + G V V + D + + Sbjct: 893 E----------------------DHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVR 930 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 K S Q G + P Sbjct: 931 SPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPG 982 Score = 292 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 94/497 (18%), Positives = 173/497 (34%), Gaps = 92/497 (18%) Query: 872 YIGAEVTGGDILVGKVTPKGETQL-TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG EV+G L+ + E ++ F + + V + + N V++ Sbjct: 753 KIGGEVSGYTHLIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMN 812 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 R G+ + + + + ++ L++ + F ++ + ++D Sbjct: 813 RASLER-GMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKM-------QSKRGRVD 864 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 L D +G + + + +++E + +K + +K +R ++ D+ Sbjct: 865 NLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDE----GKN 920 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 V L R GDK + HG KGV+ + E+ P+ G DIV+NP P+R Sbjct: 921 FAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQT 980 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 GQ+LE LG G A + + + +A Sbjct: 981 PGQLLEAALGKGIALGGTMRYATPFTTASFDVITDQLHKAGFSRWG-------------- 1026 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 A V +G + + +G Sbjct: 1027 --------------AESVLNGRTGE--------------------------RMHSLIFMG 1046 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GAA L Sbjct: 1047 PTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLH 1106 Query: 1289 EMLTVKSDDVNGRTK-----------------------MYKNIVDGNHQMEPGMPESFNV 1325 E L + SD + + +P + Sbjct: 1107 ERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKL 1166 Query: 1326 LLKEIRSLGINIELEDE 1342 L +E+ S+GI + E E Sbjct: 1167 LYQELFSMGICLRFETE 1183 >UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carteri RepID=B8R1A0_VOLCA Length = 652 Score = 352 bits (902), Expect = 6e-95, Method: Composition-based stats. Identities = 170/560 (30%), Positives = 256/560 (45%), Gaps = 102/560 (18%) Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 + + + SR L T N + K V G + GD+L + G Sbjct: 103 YPKNYSTPSRKLFLKYNLETYRRSNQDTCLIQK----PAVKEGDWIETGDLLADSASSVG 158 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 +L ++ A + + +D+ L ++ ++ ++T +E+ + ++ Sbjct: 159 -GELAIGHNIIVAYMPWEGYNYEDAIL-----INERLVYEDLYTSVHIERYEVLTTDTKL 212 Query: 952 QLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVEAEKLDK------LPRDRWLELG 1001 +Q +++ + E+ L+ ++I + + G + K+ P+ + L Sbjct: 213 GSEQITREIPDTNENEISHLDKNGIAKIGSWVEEGDILVGKVTPFNIKTLTPQQKLLYKI 272 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL-------------- 1047 + + L + + K++ D V+ Sbjct: 273 FNKQLSATKDSSLRAPKGIKANVINVNILKKQKIELNNKDKKKIVITKKAKINLLTQQTI 332 Query: 1048 ----------------------------KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 V +YLA KR+IQ GDKMAGRHGNKG+IS+I Sbjct: 333 SVQNNQNQNTNNTNGRRRKREISNTYAPSYVHIYLAEKRKIQVGDKMAGRHGNKGIISRI 392 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 P +DMP+ +GT VDIVLNPLGVPSRMN+GQI E LG+A + +G+ + Sbjct: 393 LPRQDMPFLPDGTSVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMY-- 450 Query: 1140 KLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL 1199 GAD + LS D L Sbjct: 451 ------------GADASRSFVLSKLYDARKKTG-------------------------LN 473 Query: 1200 KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1259 L D G+IRL+DGR E F++ VTVG Y+LKL H+VDDK+HARSTG YSLVTQQPL Sbjct: 474 WLFDPNHPGKIRLFDGRNSECFDQTVTVGIAYVLKLVHMVDDKLHARSTGPYSLVTQQPL 533 Query: 1260 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 G+++ GGQR GEMEVWA+E YGAA+ L EMLT+KSDD+ GR ++KN+++ N G Sbjct: 534 RGRSKQGGQRLGEMEVWAIEGYGAAFVLSEMLTIKSDDMTGRQNLWKNLIENNDIS-LGS 592 Query: 1320 PESFNVLLKEIRSLGINIEL 1339 PESF VL+ E+++L ++I L Sbjct: 593 PESFKVLVCELQALCLDIGL 612 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 109/342 (31%), Positives = 159/342 (46%), Gaps = 49/342 (14%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ Q P V G+ +E GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 118 YNLETYRRSNQDTCLIQKPAVKEGDWIETGDLLADSASSVGGELAIGHNIIVAYMPWEGY 177 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T++HI+ ++ DTKLG E+IT +IP+ E +S LD++GI Sbjct: 178 NYEDAILINERLVYEDLYTSVHIERYEVLTTDTKLGSEQITREIPDTNENEISHLDKNGI 237 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGKVTP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 238 AKIGSWVEEGDILVGKVTPFNIKTLTPQQKLLYKIFNKQLSATKDSSLRAPKGIKANVIN 297 Query: 931 VQVFTRDGVEKDKRALEIEE---------------------------------------- 950 V + + +E + + + Sbjct: 298 VNILKKQKIELNNKDKKKIVITKKAKINLLTQQTISVQNNQNQNTNNTNGRRRKREISNT 357 Query: 951 -------MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + L + +K + G I +L + D D L L Sbjct: 358 YAPSYVHIYLAEKRKIQVGDKMAGRHGNKGIISRILPRQDMPF-LPDGTSVDIVLN-PLG 415 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 + N + + + G D + Sbjct: 416 VPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMYGADASRS 457 >UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum RepID=RPC2_DICDI Length = 1608 Score = 351 bits (901), Expect = 8e-95, Method: Composition-based stats. Identities = 173/1149 (15%), Positives = 326/1149 (28%), Gaps = 219/1149 (19%) Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 V +I +EL+P E G + + I+ + Sbjct: 641 VPIKIIQELKSIELLPLLNNNEKLITISRIIGSIDKIGSNKQNEPIIQYQFNLISDFDQF 700 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 + + Y + ++ + Q ++ + Y Sbjct: 701 LKDLQYLGFINPIYKLNEEQQQQQQQKIDHQQ---QQQQQVEQQQKSIIIDFIGSSFGYF 757 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 ++L + S + + + ++ + + Sbjct: 758 IQSLLNEKNWIEKSNNQFVKKEFLSSFISNVNRIQFNIIEEINQQNNDSNFKILLNYKQQ 817 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH------LGNRRIRSVGEMAE 461 + E E ++ D+ I +K L + N + ID + N ++ ++ Sbjct: 818 KQQQNEKEERAVVDHDNEIFNIKSLQILLNQFNVISSIDFEESNLIIINSSLKKFIDLIN 877 Query: 462 NQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP- 520 +F L ++E L+ + + + +F ++ +N+ Sbjct: 878 IKFNQKLNNQIIQIREYLNYINYNNNNNNNEEINIKKKDF--GYFKKLKIK----RNSFE 931 Query: 521 --LSEITHKRRISALGPGGLTRERAGFEVRDVHPT-HYGRVCPIETPEGPNIGLINSLSV 577 + +I T E D H G V N GL+ + ++ Sbjct: 932 IEIEKIEQLNYQDCPEISDFTTES------DYHSMISNGFV-------SHNCGLVKNFAL 978 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG--NYVIAQANSNLDEEGH----FVE 631 + E P ++ + +I ++ E N + N + + FV Sbjct: 979 MSHVTTDDS-EGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIHNSPDYFVT 1037 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 L R G F + T V G L + D R + Sbjct: 1038 TLRKMRRAGRIREFVSICKNKAQ-QTISVACDGGRLCRPVIIVDDQRPRLTQEHIEDLKD 1096 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 LR R G+++Y+D + Sbjct: 1097 GLRTFDDF-------------------IREGIIEYLDVNE-------------------- 1117 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL-ALGQNMRVA-FMPWNG 809 + A P T E+ VA +P+ Sbjct: 1118 ---------------------ENDSFLAWREAAIQPWTTHLEIEPFTMLGCVAGLIPYPH 1156 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 +N + ++ ++R L + P + L+ Sbjct: 1157 HNQSPRNTYQCAMGKQAIGAI----AYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLNWYK 1212 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG--- 926 + A+ D++D+ + + Sbjct: 1213 LPA-------------------------GHNATVAVMSYSGYDIEDALVMNKASLDRGFG 1247 Query: 927 --TVIDVQVFT--RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 V+ QV + + G + R L+Q K L + I + G ++ +LV Sbjct: 1248 RCIVLKKQVTSIKKHGNDTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNK 1307 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 +D P + Y + ++++ + +T GDD Sbjct: 1308 YSPLNTIDATPNPELIP-----------DSAYKSSY--MGYKYDNPAFIDKVLLTSGDDE 1354 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 ++K+ + RR + GDK + RHG KGV I EDMP+ + G DI+ Sbjct: 1355 ----QLLIKMLMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDII----- 1405 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 MN H + IG I Sbjct: 1406 ----MN------PHGFPSRMTIGKMI---------------------------------- 1421 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 E++ + G F G + I ++L G+ + G TGE Sbjct: 1422 -----ELLAGKAGVLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLA 1476 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + G ++ KL H+V DKMHAR+ G +T+QP G+A+ GG R GEME L YG Sbjct: 1477 CFIFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYG 1536 Query: 1283 AAYTLQEMLTVKSDDVN----------GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 A+ + E L + SD G + +P + +L +E+++ Sbjct: 1537 ASALIMERLMISSDRFTVYACKNCGFLGYEGYCQYCKSSVDISTIQIPYACKLLFQELQA 1596 Query: 1333 LGINIELED 1341 + I L+ Sbjct: 1597 MNIVPRLKL 1605 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 74/509 (14%), Positives = 158/509 (31%), Gaps = 59/509 (11%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F + + K + + L Y + D + +D + Sbjct: 50 RGLVKQHIDSFNFFINVEMKKIVKANERLTAENDPSYFVRFTDINVGSPTSTEDNLDSVQ 109 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET------------ 250 P LR + Y+ +++ + + I + + +P LR Sbjct: 110 LTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMA 169 Query: 251 ----------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 F + KV + + R I +++ + V + ++ Sbjct: 170 ALGECPMDPGGYFIVRGQEKVILNHEQLSKNRIIIEMDSKGLPSASVTSS--THERKSRT 227 Query: 301 YIDESTGELICAANME-LSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRV 353 + +L N + + L G + + + ++ E + Sbjct: 228 GVTLKNEKLYLKHNTFGEDIPVAIVLKGMGVETDQEMAQLVGSDDVFLNAITPSLEECQK 287 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 + AL + ++ P + E R L+ V Sbjct: 288 CGVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSE----EARDILAGVVLNH------VPV 337 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 + L + +++++I K +DD D+ GN+RI G++ F + + Sbjct: 338 RRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQS 397 Query: 474 AVKERL-----SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL--SQF-MDQNNPLSEIT 525 +K+ + + L +I I+ S Q +F M+++ ++ Sbjct: 398 ELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLS 457 Query: 526 HKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 IS +G + R R + P+ +G +CP +TPEG L Sbjct: 458 RLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC-----LHPDTI 512 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAI 609 + P R++ DG + ++ Sbjct: 513 ITMSNGQQKPIRQLKDGDSIITLDPITME 541 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 60/384 (15%), Positives = 112/384 (29%), Gaps = 37/384 (9%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 K + + + P + L+ +DSF FI + + + + + Sbjct: 34 KPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTAEN-----DPSYFV 88 Query: 69 QYVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLV--------------- 103 ++ +G P Q C++R +TYSAP+ V + Sbjct: 89 RFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGN 148 Query: 104 --IYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 I R + K EQ +GE P M G F++ G E+VI++ S Sbjct: 149 IPIMLRSSNCVLSKKTPEQMAALGECP-MDPGGYFIVRGQEKVILNHEQLSKNRIIIEMD 207 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 K S V + R S + +P I+L+ + T+Q + Sbjct: 208 SKGLPSASVTSSTH---ERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGMGVETDQEM 264 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 + +E + A ++ V + + E+ Sbjct: 265 AQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNKKTKSEEAR 324 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANM-ELSLDLLAKLSQSGHKRIETLFTND 340 L V + ++ + +I M L G+KRIE Sbjct: 325 DILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLI 384 Query: 341 LDHGPYISETLRVDPTNDRLSALV 364 + + + A+ Sbjct: 385 SLLFEDCFKKFQSELKKSVDQAIA 408 >UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 Tax=Intramacronucleata RepID=RPA2_EUPOC Length = 1166 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 133/982 (13%), Positives = 300/982 (30%), Gaps = 118/982 (12%) Query: 146 VSQLHRSPGVFFDSDKGKTHSSGK-VLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 + H P + ++ + K L+ + S + ++D L+ R+RK+ Sbjct: 37 RACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLGEIDYDS-HILYPSECRQRKM 95 Query: 205 PATIILRALNYT--TEQILDLFFEKVIFEIRDNKLQMELVPERLRGE-----------TA 251 TI L A + ++++D F K+ + + + + E Sbjct: 96 TYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNLKGLTKKELAKRGEDMLEFGG 155 Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 F + N KV I ++ + +Y +D T L Sbjct: 156 YFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTDYGVQMRCVRDDFTAQTITLTY 215 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN-----DRLSALVEI 366 ++ +SL L+ + + I L I E + N DR+ A++ + Sbjct: 216 LSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYERIVKGNFNQRQISDRVEAILAV 275 Query: 367 YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 + + + +A + + + S + S S D +I Sbjct: 276 GKDLNIYDSDQSKALIGSRFRIVLAGITSETSDIDAGDLFLSKHICIHTDSYEAKFDTLI 335 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER-----AVKERLSL 481 ++ KL + E+D++D + + + G + L + + L Sbjct: 336 LMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQILSEKLFDCLHINLRARLNKELKR 395 Query: 482 GDLDTLMPQDMINA-------KPISAAVKEFFGSSQL--------------SQFMDQNNP 520 + D + +D++ I ++ F + L D+ N Sbjct: 396 HNFDPMKFRDVLTNQKINCGIGLIGKRMENFLATGNLISRTNLDLMQTSGFCIIGDKLNN 455 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 + ++H R ++ G E+ VR + P +G +CP+ TP+G GL+N +S+ Sbjct: 456 IRFLSHFR---SIHRGQYFAEQKTTSVRKLLPESWGFICPVHTPDGAPCGLLNHISMSCV 512 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSA-----IEEGNYVIAQANSNL-----DEEGHFV 630 + K + + ++ +S+ G Y + +L D FV Sbjct: 513 PIGSEEKQIDIDKFRNILGELGMNSISSDLCLNYHTGYYPVIFDGIHLGYVEKDIGESFV 572 Query: 631 EDLVTCR---SKGESSLFSRDQVDYMDVSTQQVV---------SVGASLIPFLEHDDANR 678 E L + S+ + ++ ++ ++ S S A +++ N Sbjct: 573 EGLRYLKCTQSQPDYAIPRTLEIAFIPFSGYSRNLQWPGIFLASTPARFTRPVKNLHYNC 632 Query: 679 ALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 + +++ + D+ + + + + ++ V + + ++ + + Sbjct: 633 IEWISPLEQMNLSIACTDEDITPETTHQELDP---INILSIVASVGVFAEYNQSPRNMYQ 689 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 +M G + R++ P P+ + D D+ E G Sbjct: 690 CQMAKQTMGTPYH--NHQFRTDNKIYRLLFP----HRPIVKTRTQVD---FDIEEYPSGT 740 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI---- 854 N VA + + GY+ ED++++++ + + + ++ Sbjct: 741 NAVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYK 800 Query: 855 -------PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 + + L +D G+ IG+++T G + G Sbjct: 801 FLNNVSQKDKSKIKLENIDPDGLPKIGSQLTKGKPELCIFDTLKR--------------G 846 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDG---VEKDKRALEIEEMQLKQAKKDLSEEL 964 K S KDS + V+V D K S Sbjct: 847 AKLSKFKDS-------EKARIETVRVCGNDDKNPDNLSIGYTIRYSRIPVIGDKFSSRHG 899 Query: 965 QILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE 1024 Q + + L P + + + + + + + E Sbjct: 900 QKGVLSVLWPQVDMPFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKTVE 959 Query: 1025 FEKKLEAKRRKITQGDDLAPGV 1046 ++ + G +L Sbjct: 960 TFQRYDDNDIVGHFGKELLDKG 981 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 103/606 (16%), Positives = 191/606 (31%), Gaps = 142/606 (23%) Query: 785 DGPSTDLGEL-ALGQNMRVA-FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 P T EL + VA + YN + ++ ++ T H + ++ Sbjct: 653 ITPETTHQELDPINILSIVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYHNHQFRTDNKI 712 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 +L + P V D + + Sbjct: 713 YRL----LFPHRPIVKTRTQVDFD-------------------------IEEYPSGTNAV 743 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE 962 A+ D++D+ + + E+ + + + S+ Sbjct: 744 VAVISYTGYDLEDA---------------MIINKSSYERGFGHGVVYKSYTHDLNESNSQ 788 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG--LTDEEKQNQLEQLAEQYDE 1020 + +++ + + + KL+ + D ++G LT + + + ++ + Sbjct: 789 STRGIKSSVRYKFLNNVSQKDKSKIKLENIDPDGLPKIGSQLTKGKPELCIFDTLKRGAK 848 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 L + + G+D + + R GDK + RHG KGV+S + Sbjct: 849 LSKFKDSEKARIETVRVCGNDDKNPDNLSIGYTIRYSRIPVIGDKFSSRHGQKGVLSVLW 908 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 P DMP+ ENG D+++NP PSRM +G ++++ + G+ Q+ + Sbjct: 909 PQVDMPFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKTVETFQRYD--- 965 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 D + L Sbjct: 966 -----------------------------------------------DNDIVGHFGKELL 978 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 G +Y G G + + +G +Y +L H+V DK AR TG ++T QP+ Sbjct: 979 DKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDILTHQPVK 1038 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----------------- 1303 G+ + GG RFGEME +L A+GAAY L + L SD G Sbjct: 1039 GRKKGGGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVNRAIMK 1098 Query: 1304 ---------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 + K ++ + +P L E+ S+GI Sbjct: 1099 TQTFIPPSLDESNKDTEDKEIHMNEKVICKVCKKNSNCKKVALPFVLRFLANELASMGIK 1158 Query: 1337 IELEDE 1342 ++ Sbjct: 1159 LKFTVN 1164 >UniRef50_C9SKJ8 DNA-directed RNA polymerase n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SKJ8_VERA1 Length = 1105 Score = 346 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 118/938 (12%), Positives = 252/938 (26%), Gaps = 147/938 (15%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-- 200 + +V Q S F D + + + + + + + D + L R Sbjct: 42 KGLVKQHIDSYNFFVDHEIKDIVRANRTIRSDVNSSFWLEFTDIRVESPSRLDFNDARAH 101 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET---------- 250 P LR + Y +D+ + + +I + + +P L+ Sbjct: 102 SEVTPMECRLRDMTYGAPIFVDIAYIRDKSKIVRRNVPLGRLPVMLKSAKCRLNGASNKE 161 Query: 251 ------------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 F I KV + + + R I + ++ + + + Sbjct: 162 MALMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKNNIITASVTSSTHERKTK 221 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSG-HKRIETLFTNDLDHGPY------ISETL 351 + + + + ++ L G +E + D G Y + Sbjct: 222 TNITLKKDRISLVHNVLVEPAPIVIVLKALGGLSDLEIMQLVAGDDGRYQDEFTVNFDEA 281 Query: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 + AL I ++ G F+ + + + Sbjct: 282 TKQGVYTQQQALEWIGSRVKMG-------GRGRFQPNSQARKNNIEEGMDALSNLIIAHI 334 Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 + + ++++ + VDD D +GN+R+ G++ F + Sbjct: 335 PVEGLDFYPKAIYVAFMTRRVLMAQANMSLVDDRDFVGNKRLELAGQLLSLLFEDLFKKF 394 Query: 472 ERAVK-------ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ---FMDQNNPL 521 VK ++ + + +A I + + + M++ Sbjct: 395 CGDVKASIDKVLKKDNRAVAMDAVTMISNHANNIGQGINRAIQTGNWTVKRFNMNRAGVT 454 Query: 522 SEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 ++ ISALG + R R + P+ +G +CP +TPEG GL+ +L+ Sbjct: 455 HVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLA 514 Query: 577 VYAQTNEYGFLETPYRKVT-DGVVTDEIHYLSAIE---EGNYVIAQANSN---LDEEGHF 629 + E R V + I S E EG+Y+I + F Sbjct: 515 LMTHITTNAEEEPVKRWVFTVDDNVEPIRNFSGSEMHREGSYIIHINGTPFALTKFPKRF 574 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 T R +G S F ++ + + + + + + A + Sbjct: 575 TNRFRTMRRRGWISPFVGVHINNHFNAV-HIATDEGRICRPYIIVKNGKPKLKAEHLKLL 633 Query: 690 VPTLRADKPLVGTGMERAVAVDSGV-----------------------TAVAKRGGVVQY 726 + G+ + V+ T + G++ + Sbjct: 634 QLGKATFDDFLTNGVVEYLDVNEENDTLVALYETDVNQSTTHMEIEPFTILGAVAGLIPF 693 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 ++ + M G Y ++ R + P P+ + Sbjct: 694 PHHNQSPRNTYQCAMGKQAIGAIAY--NQFNRIDTLLYTLVYPQ----RPMVISKTI--- 744 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 +L GQN V M ++GY+ ED++L L Sbjct: 745 QLIHYDKLPAGQNATVVVMSYSGYDIEDALL-------------------------WILM 779 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 + +GE A V L T G + E + + Sbjct: 780 AWPWSVARSGLGE---------------AMVKKETPLDTGSTGIGNDRGPSEFRDSSISY 824 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI 966 + V + + + + + + K S Q Sbjct: 825 RIPDPAY--------------IDKVMISQSEKDNMVIKVQTRQTRRPELGDKFSSRHGQK 870 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 G+ + + + P + + Sbjct: 871 GVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPSRMTVGK 908 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 89/486 (18%), Positives = 162/486 (33%), Gaps = 84/486 (17%) Query: 876 EVTGGDIL--VGKVTPKGETQLTPEE-------KLLRAIFGEKASDVKDSSLRVPNGVSG 926 E+ IL V + P +P K + D+ L Sbjct: 677 EIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQR 736 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 ++ + +K + + + D+ + L + + + + Sbjct: 737 PMVISKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALLWILMAWPWSVARSGLGEAMVK 796 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 ++ P D D + +K + ++ Sbjct: 797 KE---TPLDTGSTGIGNDRGPSEFRDSSISYRIPDPAYIDKVMISQSE----------KD 843 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 ++KV RR + GDK + RHG KGV+ I ED+P+ + G DI++NP Sbjct: 844 NMVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNP------ 897 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 H + +G + + + + ++ Sbjct: 898 ---------HGFPSRMTVGKLLECLTGKASVLDGRPDYGF-------------------- 928 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 F ++ E L G+ G TGE E + Sbjct: 929 -----------------GDAFRSHPLKQMSEALVDHGFSWEGKDYFTSGITGEPLEAYIF 971 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G +Y +L H+V DKMH+R+ G +++T+QP G+++ GG R GEME L AYGA+ Sbjct: 972 NGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSREGGLRLGEMERDCLIAYGASQL 1031 Query: 1287 LQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 L E L + SD D+ + + MP + +L++E+ S+ + Sbjct: 1032 LLERLMISSDGTEIDICQQCGLFGYKGYCHTCRSTKEVTKMTMPYAAKLLVQELISMNVG 1091 Query: 1337 IELEDE 1342 + L+ E Sbjct: 1092 VRLQME 1097 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 63/410 (15%), Positives = 124/410 (30%), Gaps = 68/410 (16%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQ 69 F P L V L+ +DS+ F++ + + RS + + L+ Sbjct: 27 TQEDKFQLLPAFLKVKGLVKQHIDSYNFFVDHEIKDIVRANRTIRS-----DVNSSFWLE 81 Query: 70 YVSYRLGEPV------------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI 117 + R+ P EC++R +TY AP+ V + + I Sbjct: 82 FTDIRVESPSRLDFNDARAHSEVTPMECRLRDMTYGAPIFVDIAYI--------RDKSKI 133 Query: 118 KEQEVYMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRSP 153 + V +G +P+M + F+INGTE+VI+ Q S Sbjct: 134 VRRNVPLGRLPVMLKSAKCRLNGASNKEMALMNECPLDPGGYFIINGTEKVILIQEQLSK 193 Query: 154 GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAL 213 K + + ++ R + + V P I+L+AL Sbjct: 194 NRVIVEADEKNNIITASVTSSTH--ERKTKTNITLKKDRISLVHNVLVEPAPIVIVLKAL 251 Query: 214 -NYTTEQILDLFFEKVIFEIRDNKL-QMELVPERLRGETASFDIEANGKVYVEKGRRITA 271 + +I+ L + + E + + + + + + +GR Sbjct: 252 GGLSDLEIMQLVAGDDGRYQDEFTVNFDEATKQGVYTQQQALEWIGSRVKMGGRGRFQPN 311 Query: 272 RHIRQ--------------LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 R+ + V+ ++ + I + + + + + Sbjct: 312 SQARKNNIEEGMDALSNLIIAHIPVEGLDFYPKAIYVAFMTRRVLMAQANMSLVDDRDFV 371 Query: 318 SLDLLAKLSQSGHKRIETLFTND-LDHGPYISETLRVDPTNDRLSALVEI 366 L Q E LF D I + L+ D + A+ I Sbjct: 372 GNKRLELAGQLLSLLFEDLFKKFCGDVKASIDKVLKKDNRAVAMDAVTMI 421 >UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium tetraurelia RepID=A0BY74_PARTE Length = 1115 Score = 344 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 116/884 (13%), Positives = 260/884 (29%), Gaps = 115/884 (13%) Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV 228 K Y A ++ E D VR+ +P + + + +L ++ Sbjct: 87 KKSYTAPMLATICR----EIDDNPKETVRLSLGE-IPILVKSQKCHLNGLSAEELVQQQE 141 Query: 229 IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 + + +R I+ K + ++ Sbjct: 142 DCNEFGGYFIINGNEKIIRM----LIIQKRNYPIAFKRPGYKNKGFNF--SPYAVQMKCV 195 Query: 289 VEYIAGKVVAKDYIDESTGEL-ICAANMELSLDLLAKLSQSGHKRIETLF---------- 337 + + Y+ + L I EL + ++ L ++ Sbjct: 196 RSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDMNDYQIYQQIVRSQADK 255 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 ++ D + + N + AL I R++R E F+ + DL Sbjct: 256 SDISDRVEVMIADAKSRGINTQKDALEYIGRLLR-------------VELNIFNPETTDL 302 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 VGR+ + + ++ ++KL + + D++D L N+ + G Sbjct: 303 -QVGRIFLREHICVH--LDNDQDKASILLLCIEKLYALFIDEINPDNLDSLVNQEVLLSG 359 Query: 458 EMAENQFRVGLVRVERAVKER-LSLGDLDTLMPQDMINAK-------PISAAVKEFFGSS 509 + R L + V+E+ L + +D+ K + ++ F + Sbjct: 360 HLYTAYLREKLEDLLVGVREKILKDATKEQSKLKDLAYFKRCFDLQTTVGEKLENFLATG 419 Query: 510 QL-SQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 L SQ D+ N + ++H R ++ G + VR + P + Sbjct: 420 NLRSQTGLDLMEASGFTIIADKLNNMRFLSHFR---SVHRGSYFAQMKTTTVRKLLPDVW 476 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE---- 611 G VCP+ TP+G GL+N +++ + E ++ + + + + Sbjct: 477 GFVCPVHTPDGGPCGLLNHITMSCVPLTHP-DEQDIEELLFPLGVQSQRLIYSKNDLPVV 535 Query: 612 -GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF-----SRDQVDYMDVST-QQVVSVG 664 +I NS+L F + +S G Q + + + + Sbjct: 536 LNGKLIGYLNSSLL--PTFEHTIRVYKSNGTIKETTEVACLPRQENKSPLFPGIYINTTV 593 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 A L+ + + N + +++ + + + + ++ V Sbjct: 594 ARLMRPVINLKLNTIEWISPLEQINMSIACTQADIRTDTQYQEIDP---AYILSILASNV 650 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 +++ ++ + + +M G +N R + P + D Sbjct: 651 PFLNYNQSPRNMYQCQMAKQTMGSPCHNYPY--RFDNKMYRILFPQKPVVRCFGYDDY-- 706 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 + A G N VA + + GY+ ED++++ + + I + D K Sbjct: 707 -----QFADYASGTNAIVAVISYTGYDMEDAMILCKSSYERGFGHGIIYKSSEYSLNDDK 761 Query: 845 LGPEEITADIPNVGEAALS-----KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 ++ + IP + L G+ VT G ++ Sbjct: 762 EVKYKLLSQIPVQLYNQIKSQIPVNLLPYGLPEQSQVVTKGTAVL--------------- 806 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 A++ + VK + + + V V + + K Sbjct: 807 ----ALYDSQLQQVK--VHHSKDSETARIEQVAVVNKSENDVSVMIKYRINRNPIIGDKF 860 Query: 960 LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 S Q L + + + P + + Sbjct: 861 SSRHGQKGVMSLLWPQIDMPFSESGMVPDIIINPHAFPSRMTIG 904 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 113/820 (13%), Positives = 229/820 (27%), Gaps = 178/820 (21%) Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 T K+ + + T + + ++ ++ F+ + + Sbjct: 406 TTVGEKLENFLATGNLRSQTGLDLMEASGFTIIADKLNNMRFLSHFRSVHRGSYFAQMKT 465 Query: 648 DQVDYM------DVSTQQVVSVGA---------SLIPFLEHDDANRALMGANMQRQAVPT 692 V + V G S +P D+ + + + Q+ Sbjct: 466 TTVRKLLPDVWGFVCPVHTPDGGPCGLLNHITMSCVPLTHPDEQDIEELLFPLGVQSQRL 525 Query: 693 LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN 752 + + L + + + + Y I + E ++ Sbjct: 526 IYSKNDLPVVLNGKLIGYLNSSLLPTFEHTIRVYKSNGTIKETTEVACLPRQENKSPLFP 585 Query: 753 LTKYTRSNQNTCINQMP----------------CVSLGEPVERGDVLADGPSTDLGELAL 796 N P +++ + D+ D ++ + Sbjct: 586 GIY---INTTVARLMRPVINLKLNTIEWISPLEQINMSIACTQADIRTDTQYQEIDPAYI 642 Query: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856 ++ + +P+ YN + ++ ++ + H ++ + + P Sbjct: 643 -LSILASNVPFLNYNQSPRNMYQCQMAKQTMGSPCHNYPYRFDNKMYR----ILFPQKPV 697 Query: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS 916 V + A+ D++D+ Sbjct: 698 VRCFGYDDYQ-------------------------FADYASGTNAIVAVISYTGYDMEDA 732 Query: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEA---GLFS 973 + + E+ I + D + ++L L++ Sbjct: 733 ---------------MILCKSSYERGFGHGIIYKSSEYSLNDDKEVKYKLLSQIPVQLYN 777 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 +I++ + + ++ L + Q Q ++ D E+ + Sbjct: 778 QIKSQIPVNLLPYGLPEQSQVVTKGTAVLALYDSQLQQVKVHHSKDSETARIEQVAVVNK 837 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 + V + + R GDK + RHG KGV+S + P DMP+ E+G Sbjct: 838 SENDVS----------VMIKYRINRNPIIGDKFSSRHGQKGVMSLLWPQIDMPFSESGMV 887 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 DI++NP H + IG I +M Sbjct: 888 PDIIINP---------------HAFPSRMTIGMLIESM---------------------- 910 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF----DGAKEAEIKELLKLGDLPTSGQ 1209 N+ +G T F + + L G Sbjct: 911 -----------------AAKANVLQGEMFETHPFQNYENDNVVDYFGKQLIKHGYNYHGN 953 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 LY G G + + G +Y +L H+V DK ARS G ++TQQP+ G+ + GG R Sbjct: 954 ETLYSGIYGTPLKVDIYFGVVYYQRLRHMVSDKSQARSMGPVDVLTQQPIKGRKKGGGIR 1013 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK---------------------- 1303 GEME AL A+G AY + + L SD + + Sbjct: 1014 LGEMERDALIAHGVAYCINDRLLKCSDYSETYICDKCGNMLATYQFVQLLSLENIQSVQS 1073 Query: 1304 --MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 Y + +P L+ E+ ++ + +E Sbjct: 1074 SHPYCVRCKQAKCSKVAIPFVLRYLVNELAAMNVKLEFSV 1113 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/391 (13%), Positives = 120/391 (30%), Gaps = 74/391 (18%) Query: 29 SIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS----------YSGNSELQYVSYRLGEP 78 ++SF GL R + PI+ N ++ ++G P Sbjct: 14 KHHIESFNYLYTH------GLVEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMP 67 Query: 79 ---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 +C+ +Y+AP+ + I + + +GEIP+ Sbjct: 68 TQQGMLGDNRVLPTQCRQMKKSYTAPMLATICREIDDNPKETVRLS--------LGEIPI 119 Query: 130 MTDN------------------------GTFVINGTERVIVSQLHRSPG--VFFDSDKGK 163 + + G F+ING E++I + + + F K Sbjct: 120 LVKSQKCHLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYK 179 Query: 164 THSSGKVLYNARIIPYRGSW----LDFEFDPKDNLFVRIDRRRK---LPATIILRALNYT 216 Y ++ R + + N+++RI ++K +P I+LRAL Sbjct: 180 NKGFNFSPYAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDM 239 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 + +++++ D + V + + + R Sbjct: 240 NDY---QIYQQIVRSQADKSDISDRVEVMIADAKSRGINTQKDALEY---IGRLLRVELN 293 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI--E 334 + + ++V ++ + D+ ++ +L + +++ + + Sbjct: 294 IFNPETTDLQVGRIFLREHICVHLDNDQDKASILLLCIEKLYALFIDEINPDNLDSLVNQ 353 Query: 335 TLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 + + + Y+ E L R L + Sbjct: 354 EVLLSGHLYTAYLREKLEDLLVGVREKILKD 384 >UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogonium cardiacum RepID=B2X1Z1_OEDCA Length = 672 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 178/663 (26%), Positives = 288/663 (43%), Gaps = 79/663 (11%) Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL--PAT 207 H FF +S +I + + F+ KL P Sbjct: 11 HEQKNQFFSDFTELQRNSFLNFLKNGLIEELSNRNPIRNHKNNIEFIFYPEYYKLKRPKW 70 Query: 208 IILRALNYTTEQILDL-----FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 + ++ + +L +K +I+ + + +P L + F I +V Sbjct: 71 NVRESILLGKSYVAELYVPAQLMDKNNKKIQLKWVLIGNLP--LMTKRGYFIINGAARVI 128 Query: 263 VEKGRRITARHIRQLEKD-----------DVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + R + + + ++++ + + Sbjct: 129 MNQIIRGPGIYYSEAIHQYDSFEKKNILMNQSFSRYYADFVSLRGYWLRLSVDKDQFFWA 188 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFT--------------NDLDHGPYISETLRV---- 353 + LL L G + + L+ Sbjct: 189 EMKKTPKIPLLWFLLAIGLNERLLFRYISNPKRLLHNLHNSLKSKTQLALIKKLQKLQHI 248 Query: 354 -----DPTNDRLSALVEIYRMMRPGEPPT------------------------------- 377 + + ++ + T Sbjct: 249 QLNVSNNIEKKQKNKTHTIERVQKNDTHTLYQYNFLPDSSLMAWDLISKKLVKKKKMSIL 308 Query: 378 --REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 +E F + YD+ +GR+ N+ +L+ D++ L+ + Sbjct: 309 KSQEQTRKWLFQRFMNPRSYDIGTIGRLALNKKFNLSISTKKHVLTPYDLLFATDYLMKV 368 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 G +DDIDHL NR++R+ E+ + Q +GL+R+E+ +K+RL+ + + +I Sbjct: 369 EKGLKNLDDIDHLQNRKLRTASEIIQIQIGIGLIRLEKYIKDRLNQIKVF-PKIESLITT 427 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 K +++A+ EFFG+S LSQFMDQ NPL+EITHKRR+++LGPGG+T++ A +R +HPTHY Sbjct: 428 KSLNSALTEFFGTSPLSQFMDQINPLAEITHKRRLTSLGPGGITKDNATMIIRGIHPTHY 487 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGN 613 GR+CP+ETPEG N GL+NS++ YA+ N G +ETP+ KV G V I +LSA +E Sbjct: 488 GRICPVETPEGKNAGLVNSITTYAKINSSGLIETPFYKVYKGQVMKNLGIFFLSADDEEQ 547 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 A+ NL G ++ + R K FSR+QV YM +S Q++S+ SL+PF EH Sbjct: 548 INTVAADINLSAFGFLPKNYIPGRKKDNFIRFSRNQVHYMSISPIQMISIATSLVPFFEH 607 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 DDANRALMGANMQRQAVP +R +P+VGTG+E DSG ++ GG+V YV A +I+ Sbjct: 608 DDANRALMGANMQRQAVPLIRPKRPIVGTGVEIRSVADSGHIIESRTGGIVSYVSAKKII 667 Query: 734 IKV 736 + Sbjct: 668 VHT 670 >UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax=root RepID=RPOB1_METJA Length = 636 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 136/763 (17%), Positives = 247/763 (32%), Gaps = 190/763 (24%) Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 E YV + D+ V + R KGE Q +V Sbjct: 8 EVNIYVNGKLVGTTDKPEELVNFIREKRRKGELP---------------QYTTVAY---- 48 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADK--PLVGTGMERAVAVDSGVTAVAKRGGVVQYV 727 ++++N + + R P + + P + + + + GV++Y+ Sbjct: 49 ---NEESNDIHINTDAGRIVRPLIVVENGKPKLTKEHIEKLKKGEITFSDLVKEGVIEYL 105 Query: 728 DASRIV---IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 DA I ++E+E+ ++I LT Sbjct: 106 DAEEEENAYIALSEEELTEKHTHLEIDPLT------------------------------ 135 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 LG VA P+ +N I ++ + ++ + R Sbjct: 136 ----------ILGIGAGVA--PYPEHNSAPRITMAAAMGKQSLGIPMS----NIKWRLDT 179 Query: 845 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 G +P V L + + + A Sbjct: 180 RGHYLHYPQVPIVRTKHQEILGFD-------------------------KRPAGQNFVVA 214 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR----ALEIEEMQLKQAKKDL 960 I + +++D+ + + + + F + + E Sbjct: 215 IMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACERRYPGGQMDRFEIPDKGVRGYRS 274 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 E + LE + + + G V K E+ + + Q + + ++ E Sbjct: 275 EECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLEEHEITIQVK-PQRRDSSVVVRHGE 333 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 +K + + ++VKV + R + GDK A RHG KGV+ Sbjct: 334 EG-YIDKVILTE----------TKEGNRLVKVKVRDLRIPELGDKFASRHGQKGVMGLTV 382 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 P ED+P+ E+G DI+ + H + +G + Sbjct: 383 PQEDLPFTESGIVPDII---------------INPHAIPSRMTVGQLL------------ 415 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 E++ +G I +F G KE ++++ L+ Sbjct: 416 ---------------------------EMLGGKVGALEGRRIDGTIFSGEKEWDLRKALE 448 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 G+ +YDG+TG++FE + +G Y KL+HLV K+HARS G ++T+QP Sbjct: 449 ALGFKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTE 508 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----------------------DV 1298 G+A+ GG RFGEME L +GAA L+E L +SD Sbjct: 509 GRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFAILDYKRGLKY 568 Query: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 +N+ +P +F +LL E++S+ I ++ Sbjct: 569 CPICGEIENLYSSKKIPFVRIPYAFKLLLDELKSMCILPRIKV 611 >UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=Archaea RepID=RPOB1_METTH Length = 603 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 127/752 (16%), Positives = 236/752 (31%), Gaps = 177/752 (23%) Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 Y+ + + FVE++ R GE VS + ++ Sbjct: 5 KIYINGKLIGTCENPEEFVEEMRKKRRSGE-------------VSPEMNITHYP------ 45 Query: 672 EHDDANRALMGANMQRQAVPTLRAD--KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 + + + + R P + + +PL+ + G+++Y+DA Sbjct: 46 ---ENHEIYIFTDPGRARRPLIIVEDGEPLLTEEHLEKLETGEMSWDDLIAAGIIEYLDA 102 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 + + L PST Sbjct: 103 EEEE---------NAYIAMSPDEINDEHTH-----------------------LEIDPST 130 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 LG + +P+ +N + + ++ ++ R Sbjct: 131 MLG-------ICAGIIPFANHNSSPRNTMEAGMTKQAL--GLYASNY--DLRTDTRAHLL 179 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 +P V + G + + + A+ + Sbjct: 180 HHPQVPIVKTRIID-------------------------VTGYDERPSGQNFVVAVMSYE 214 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR----ALEIEEMQLKQAKKDLSEELQ 965 +++D+ + + + F + + E + + + Sbjct: 215 GYNMEDALILNKASLERGLARSSFFRSYEAAERRYPGGQEDRFEIPEKGVRGYRSESDYR 274 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 L+ A + +G V K ++ ++ + + ++ E Sbjct: 275 HLDEDGIINPEAEVSSGDVLIGKTSPPRFLEEID-EFGTVAERRRETSVTVRHGEKGIV- 332 Query: 1026 EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 ++ K+ + +R+ + GDK A RHG KGV+ I EDM Sbjct: 333 ----------DAVLLTETVEGSRLAKIRVREQRQPELGDKFASRHGQKGVVGLIVSQEDM 382 Query: 1086 PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFI 1145 P+ E+G D+ I+ H + +G + Sbjct: 383 PFTEDGIVPDL---------------IVNPHAIPSRMSVGQVL----------------- 410 Query: 1146 QRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP 1205 E++ +G + F G E +IKE L+ Sbjct: 411 ----------------------EMLAGKAACMEGRRVDGTPFTGEDEDDIKEALRANGFE 448 Query: 1206 TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 T+G LY+G TGE+ E + +G Y KL+H+ DK++ARS G ++T+QP G+A+ Sbjct: 449 TAGVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRARE 508 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTKM-----------YKNIVD 1310 GG RFGEME L A+GAA L+E L +SD V M Y I + Sbjct: 509 GGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCADCGMIAVYDKIRDKKYCPICE 568 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +F +LL E++SL I +L E Sbjct: 569 DSESFPVEVSYAFKLLLDELKSLCIFPKLILE 600 >UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi RepID=Q2TAM4_HUMAN Length = 952 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 105/491 (21%), Positives = 168/491 (34%), Gaps = 91/491 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA------SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 P Q + KL R + D D P G + V V + G + Sbjct: 515 FPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNY-PIGTNAIVA---VISYTGYDM 570 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---LDKLPRDRWL 998 + + + + + + ++ + + G++ L KL D Sbjct: 571 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLP 630 Query: 999 ELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +G + L E + K+ +D G K V + + V Sbjct: 631 FIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRV 690 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 R GDK A RHG KG++S++ P EDMP+ E+G DI+ NP H Sbjct: 691 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNP---------------H 735 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 + IG I +M + A D + F E Sbjct: 736 GFPSRMTIGMLIESMAGKSA----------------ALHGLCHDATPFIFSE-------- 771 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 + + E+LK G RLY G +G + E + +G +Y +L Sbjct: 772 -----------ENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLR 820 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DK R+TG+ VT QP+GG+ GG RFGEME AL A+G ++ L + L SD Sbjct: 821 HMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 880 Query: 1297 ----DVNGRTKM----------------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 V + + +P F + E+ Sbjct: 881 RSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAEL 940 Query: 1331 RSLGINIELED 1341 ++ I ++L+ Sbjct: 941 AAMNIKVKLDV 951 Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 53/387 (13%), Positives = 110/387 (28%), Gaps = 46/387 (11%) Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 D R E + +V + ++ + S+ L F R + + + Sbjct: 393 ELPTDHTVLR---EKRIPPWMEVVLIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLALGK 447 Query: 688 QAVPTLRADKPLVGTGMERAVAVDS-------GVTAVAKRGGVVQYVDASRIVIKVNEDE 740 + + + E V + ++ + + D ++ + + + Sbjct: 448 EELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQ 507 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 M G + LT RS+ Q P L P D +G N Sbjct: 508 MGKQTMGFPL--LTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN-------YPIGTNA 558 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT-KLGPEEITADIPNVGE 859 VA + + GY+ ED+++V++ + + + K G + I Sbjct: 559 IVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDP 618 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 L KLD+ G+ +IGA++ GD + + + + Sbjct: 619 RVLQKLDDDGLPFIGAKLQYGDPYYSYL---------------------NLNTGESFVMY 657 Query: 920 VPNGVSGTVIDVQVFTRD---GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + + V +++V + D G K K S Q Sbjct: 658 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 717 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + P + + Sbjct: 718 DMPFTESGMVPDILFNPHGFPSRMTIG 744 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 41/335 (12%), Positives = 81/335 (24%), Gaps = 34/335 (10%) Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL-DFEFDPKDNLFVRIDR-RRKLPAT 207 SP K + R YRG D + I + +P Sbjct: 81 VISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIM 140 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 + + N L E + + + +R + + Sbjct: 141 VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKT 200 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL---LAK 324 R V + V E+ A + + + L L L Sbjct: 201 RGPGYTQY-----GVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKA 255 Query: 325 LSQSGHKRIETLFTNDLDHGPYISETLR-------VDPTNDRLSALVEIYRMMRPGEPPT 377 L +I + ++ ++ + + L + R Sbjct: 256 LVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGECFR------ 309 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 D Y FN+ + S + + +KL + Sbjct: 310 ---------VKLNVPDWYPNEQAAEFLFNQCICIH--LKSNTEKFYMLCLMTRKLFALAK 358 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 G D+ D L N+ + + G++ + L +E Sbjct: 359 GGCMEDNPDSLVNQEVLTPGQLFLMFLKGSLPLME 393 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 75/256 (29%), Gaps = 63/256 (24%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVF- 80 + L ++SF GL A +++ P + + + + + P Sbjct: 35 LQELTRAHVESFNY------AVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVP 88 Query: 81 ----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 EC+ R TY L + + G K I +Q ++G +P+M Sbjct: 89 KGTICKEANVYPAECRGRRSTYRGKLTADINWAV------NGISKGIIKQ--FLGYVPIM 140 Query: 131 TDNG------------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKTHS 166 + F+ING E+VI + F + Sbjct: 141 VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRN-FPIAMIRPKWK 199 Query: 167 SGKVLYNARIIPYRGSW-------LDFEFDPKDNL---FVRIDRRRKLPATIILRAL-NY 215 + Y + ++ + + F+ LP L+AL ++ Sbjct: 200 TRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSF 259 Query: 216 TTEQILDLFFEKVIFE 231 + QI + + Sbjct: 260 SDYQIFQELIKGKEDD 275 >UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SSB7_ENCCU Length = 1062 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 105/503 (20%), Positives = 190/503 (37%), Gaps = 75/503 (14%) Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE----KLLRAIFGEKASDV 913 G+ ++D+SGI+ I + + P + +P ++ + G A ++ Sbjct: 616 GDGDYYEIDKSGILGI----------IAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNI 665 Query: 914 K---DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 + D ++ N + ++ + + V+ + L D+ + L I + Sbjct: 666 RTRTDPTMYTVNYLQSPIVRTE--GYEMVKDYPVGINCMVAVLSYTAYDMEDALVINKNS 723 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE 1030 I L G V + L + + + ++ + + L D+ E+EK+ Sbjct: 724 ----IDRGLFTGYVYKTEKVPLDKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYL 779 Query: 1031 --AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD 1088 + + + R GDK + RHG KGV S P DMP+ Sbjct: 780 GTEPGIVDIVRVFENDMGERCATFTIRIVRSPMIGDKFSSRHGQKGVCSMHWPGIDMPFT 839 Query: 1089 ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 E+G DI++NP PSRM IG ++E+ G G++ + + ++ + + E Sbjct: 840 ESGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGTVFKKSFLLEQEEGDDEK 899 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 + L+ G Sbjct: 900 VRRK----------------------------------------EYLCSELRRHGFNYYG 919 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 +Y G G +F + VG +Y +L H+V DK R+ G+ T+QP+GG+ + GG Sbjct: 920 NEPMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKRGGI 979 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDD-VNGRTKMYKN---------IVDGNHQMEPG 1318 RFGEME AL ++GA+Y LQ+ L SD V ++ I + Sbjct: 980 RFGEMERDALISHGASYLLQDRLLKSSDSTVFEYCGTCRSILFTNNGDCICGSSDLKAVE 1039 Query: 1319 MPESFNVLLKEIRSLGINIELED 1341 MP F L E+ ++ I ++++ Sbjct: 1040 MPYVFKYLCCELLAMNIKVQIDL 1062 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 127/928 (13%), Positives = 244/928 (26%), Gaps = 158/928 (17%) Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGK---VLYNARIIPYRGS-WLD 185 + ++ G ++IV ++H +P F SDK + R + Y+G + Sbjct: 38 LVAGVPPLVKGKTKIIVEEIHVAPP--FLSDKDHISVDRRLLPRECRERGLTYKGKMVVR 95 Query: 186 FEFDPKDNLFVRIDRR-RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + V D+ P + + + + E + + + Sbjct: 96 VSLFHDNKHVVTEDKSAGHFPIMVRSTLCHLNGIKNKNEVGEDE--DEIGGYFIINGIDR 153 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 +R F+I R V + V + I D Sbjct: 154 FIR-----FNIMQKRNHIFAFKMRKKTSFFSDY---MVSMRCVGRDEIGHMNFLHYCTDG 205 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTN--DLDHGPYISETLRVDPTNDRLSA 362 + I E L+ L + E LF ++ + R Sbjct: 206 NVVIKIFHKKYEFLFPLVLVLKALVNTTDEELFGALGGGQRAVHLLKCFAEHNVFSRTEC 265 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L I ES E +Y +S S + Sbjct: 266 LDYIGSRFS-----AILNFESKAEVAEEILSKYVVSH---------------LSSNLDKF 305 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV------- 475 + +I +KL + + DD D N + + ++ + R + R Sbjct: 306 NFLILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIEEFMRFFSMMCRKT 365 Query: 476 -------KERLSLGD-------LDTLMPQDMI-----NAKPISAAVKEFFGSS------- 509 K +L D L + + I ++ F S Sbjct: 366 YYKLEGEKRKLEGDSVTESGFCEDELDISKIREIFKRTSINIGQRMELFLSSGSITLTSC 425 Query: 510 -------QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 562 S ++ N ++H R ++ G +R + P +G +CP+ Sbjct: 426 SDILQTLGFSITAERINFYKYLSHFRGVN---RGTHIPSM-VTSIRKLRPESWGFLCPVH 481 Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 622 TP+G G++ ++ A+ GVV S + N Sbjct: 482 TPDGAPCGVLLHMAKEAEVVSRDDDFNTDILFEFGVV------PSIRGVEMGIPVLVNGR 535 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 + DL R E + ++ + S ++ S+ F R +M Sbjct: 536 VVGSTSSPSDL--TRMVREYRNRNGLMIEVVYTSEPKMF---PSVCIFSSVGRFARKVMN 590 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT----AVAKRGGVVQYVDASRIVIKVNE 738 + + + L E A D + G++ Y D ++ + + Sbjct: 591 RRLGSEEWIGIMEQVFLNIDTEEGAGDGDYYEIDKSGILGIIAGLIPYSDHNQSPRNMYQ 650 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTC---INQMPCVSLGEPVERGDVLADGPSTDLGELA 795 +M G +N+ TR++ Q P V +G Sbjct: 651 CQMAKQAIGHPAHNI--RTRTDPTMYTVNYLQSPIV-----------RTEGYEMVKD-YP 696 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP 855 +G N VA + + Y+ ED++++++ + FT + Sbjct: 697 VGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTEKVPLDKGYFFTY------- 749 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 + +G + D L V D ++ Sbjct: 750 --------------LPSVGQRIQKDDTLYRYV----------------------DQDGRE 773 Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 R G V V+VF D E+ K S Q + Sbjct: 774 YEKRYLGTEPGIVDIVRVFENDMGERCATFTIRIVRSPMIGDKFSSRHGQKGVCSMHWPG 833 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + P + + Sbjct: 834 IDMPFTESGCVPDIIINPHAFPSRMTIG 861 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 85/254 (33%), Gaps = 66/254 (25%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 RK + P +++ ++++ + L+ V P+ G +++ Sbjct: 6 RKIY---PCRMELKDAAKAHIEAYNAIFNGNI-----LDNLVAGVPPLV--KGKTKIIVE 55 Query: 72 SYRLGEP------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 + P +EC+ RG+TY + V++ L K + Sbjct: 56 EIHVAPPFLSDKDHISVDRRLLPRECRERGLTYKGKMVVRVSL--------FHDNKHVVT 107 Query: 120 QEVYMGEIPLMTDNG----------------------TFVINGTERVIVSQLHRSPGVFF 157 ++ G P+M + F+ING +R I + + F Sbjct: 108 EDKSAGHFPIMVRSTLCHLNGIKNKNEVGEDEDEIGGYFIINGIDRFIRFNIMQKRNHIF 167 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRRK---LPAT 207 K S ++ ++ R D + N+ ++I ++ P Sbjct: 168 AFKMRKKTSF----FSDYMVSMRCVGRDEIGHMNFLHYCTDGNVVIKIFHKKYEFLFPLV 223 Query: 208 IILRALNYTTEQIL 221 ++L+AL TT++ L Sbjct: 224 LVLKALVNTTDEEL 237 >UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas RepID=C1FDM4_9CHLO Length = 1192 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 113/952 (11%), Positives = 249/952 (26%), Gaps = 132/952 (13%) Query: 163 KTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILD 222 + Y A ++ +W + RI P + + N + Sbjct: 97 RECRESSNTYKAPMLAT-VAWTFGDVGAIFRREFRICM---FPVMVASKVCNLFGFSQDE 152 Query: 223 LFFEKVIFEIRDNKLQMEL---VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEK 279 L + + L + + + K Y +G T Sbjct: 153 LICRGEEGHEMGGYFILNGNERIIRLLVQQRRHYIMGMKRKAYSSRGPIYTHYATAIRCS 212 Query: 280 DDVKLIEVPVEYIAGKVVAKDYIDESTGE------LICAANMELSLDLLAKLSQSGHKRI 333 + + + A+ E +I A E S ++ + G + Sbjct: 213 ANDEHTSTVRIHYTSDGSARLVFVHRRKEYFVPAGIILRALAEFSDSVVQAIVARGLTGL 272 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED 393 ++ I ++++ AL + R Sbjct: 273 GA-QVFAIERIRIILGEAATFGIHNKVQALAYLGEHFRAQLDANP--------------- 316 Query: 394 RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 VG+ + S + ++ +M+KL + G+ D+ D L + I Sbjct: 317 WETNFDVGKRLICEHIFIH--LQSDEDKFNLVLLMMQKLYALVAGQCSADNPDSLMHHEI 374 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM-------------INAKPISA 500 G + + R L K L+ + I I Sbjct: 375 LLPGILMQIFVREKLQDALHKAKIALNREFEENPNHASADDGEWLSQVAIEAITKTNIGR 434 Query: 501 AVKEFFGSSQLS--------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 + F + LS D+ N + I+H R ++ G E Sbjct: 435 LAEYFLATGNLSSRTGLGLTQTSGFTIVADKLNYMRYISHFR---SVHRGAYFAELRTTT 491 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 VR + P +G +CP+ TP+G GL+N L+ + R V + Sbjct: 492 VRKLLPESWGFLCPVHTPDGSPCGLLNHLAASCYIHVACESTGEARDRARSQVLKVLSSA 551 Query: 607 SAIEEGN----------YVIAQANSNL------DEEGHFVEDLVTCRSKGESSLFSRDQV 650 A+ ++ + + + V L + G + + S ++ Sbjct: 552 GALILHGSTSLGSAPPAHLTVMLDGLILGFVADSDAKVVVSALRAAKVSGSNGVSSHLEI 611 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALM---------GANMQRQAVPTLRADKPLVG 701 ++ +S+ L F R ++ ++++ + D Sbjct: 612 AHIPLSSCGYGGAFPGLYLFSTSSRMMRPVIQQQNRITENIGSLEQAFMSIRCPDGRQKP 671 Query: 702 TGMERAVAVDSG-VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 T + ++G T ++ + + D ++ + + +M G+ +++ R + Sbjct: 672 TCIAEHAHEENGPGTILSVVASLTPWSDFNQSPRNMYQCQMAKQTMGMPLHSFCY--RPD 729 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 P + + D LG N VA + GY+ ED+++V++ Sbjct: 730 TKIYRLHTPQRPVAMTGQYDKYQMDN-------YPLGTNAVVAVIAHTGYDMEDAMIVNK 782 Query: 821 RVVQEDRFTTIHIQELACVS---RDTKLGPEEITADIPNVGEAALSK------LDESGIV 871 ++ + D G + A K +D G Sbjct: 783 GAMERGLGHATLYKTETVTLVAGSDENFGQCNVIQQKLGSPIAFTEKHPFDPDIDTDGAP 842 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 G+ G L V S + ++ + V Sbjct: 843 RPGSIKQAGSTLCSVV---------------------DRSTGRVRLHKIKGSDHVIIDRV 881 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 + + + ++ + + + G + + + + Sbjct: 882 SISSGKASKGQTETKMSVTVRCD--RNPIIGDKFSSRHGQKGVLSFLCPEEDLPYIEKSG 939 Query: 992 LPRDRWLE-LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 D + + L E + + D+ Sbjct: 940 SRPDILINPHAFPSRMT---IGMLLESMASKAGALDGRFIDASPFQAANDET 988 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 106/516 (20%), Positives = 164/516 (31%), Gaps = 109/516 (21%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDV-----KDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 P P+ K+ R ++ + K P G + V V T +E Sbjct: 719 MPLHSFCYRPDTKIYRLHTPQRPVAMTGQYDKYQMDNYPLGTNAVVA-VIAHTGYDMEDA 777 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV---------EAEKLDKLP 993 + + E L AG V + + Sbjct: 778 MIVNKGAMERGLGHATLYKTETVTLVAGSDENFGQCNVIQQKLGSPIAFTEKHPFDPDID 837 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHEF---EKKLEAKRRKITQGDDLAPGVLKIV 1050 D G + + ++ + R I+ G + Sbjct: 838 TDGAPRPGSIKQAGSTLCSVVDRSTGRVRLHKIKGSDHVIIDRVSISSGKASKGQTETKM 897 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNI 1109 V + R GDK + RHG KGV+S + P ED+PY E +G+ DI++NP PSR Sbjct: 898 SVTVRCDRNPIIGDKFSSRHGQKGVLSFLCPEEDLPYIEKSGSRPDILINPHAFPSR--- 954 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 IG + +M + GA + +D S F Sbjct: 955 ------------MTIGMLLESMASKA----------------GALDGRFIDASPFQAAND 986 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 + + E E+L+ SG + +G TGE+F+ + VG Sbjct: 987 ETHIISPTR---------------EYGEMLRKHGYNYSGSETMVNGLTGERFDVDIFVGL 1031 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 +Y +L H+V DK RS G + +TQQP+ G+ GG RFGEME AL A+G++Y + + Sbjct: 1032 VYYQRLRHMVSDKFQVRSLGPNNPLTQQPIKGRKAGGGIRFGEMERDALIAHGSSYLIHD 1091 Query: 1290 MLTVKSDDV----NGRTK----------------------------------------MY 1305 L SD Sbjct: 1092 RLHACSDRHVTSLCTYCGSLLAPGANIQMAATHQVHASGAGNGQGRLHSFDDIFPRKVSC 1151 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + G +P F L E+ ++ I I LE Sbjct: 1152 RVCNTGTGVHNVALPFVFKYLAAELAAMNIRIGLEV 1187 Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 65/470 (13%), Positives = 135/470 (28%), Gaps = 80/470 (17%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI---------QSYSGNSELQYVSYR 74 + + L SF F++ GL R + I S S ++ + + Sbjct: 22 LRGVARNHLASFDYFLDH------GLSDVVRCLDNISIQPSGAQNTSSSPRFKMWFENIS 75 Query: 75 LGEP-------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 +G P +EC+ TY AP+ + + V I +E Sbjct: 76 IGRPIREDTTAVRARDPRVFPRECRESSNTYKAPMLATVAWTFGD-------VGAIFRRE 128 Query: 122 VYMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRSPGVFF 157 + P+M + F++NG ER+I + + + Sbjct: 129 FRICMFPVMVASKVCNLFGFSQDELICRGEEGHEMGGYFILNGNERIIRLLVQQRR-HYI 187 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGS---------WLDFEFDPK-DNLFVRIDRRRKLPAT 207 K K +SS +Y R S + + D +FV + +PA Sbjct: 188 MGMKRKAYSSRGPIYTHYATAIRCSANDEHTSTVRIHYTSDGSARLVFVHRRKEYFVPAG 247 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 IILRAL ++ ++ + + + +E + + GE A+F I + G Sbjct: 248 IILRALAEFSDSVVQAIVARGLTGLGAQVFAIERI-RIILGEAATFGIHNKVQALAYLGE 306 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 R + + ++ ++ +L + Sbjct: 307 HF--RAQLDANPWETNFDVGKRLICEHIFIHLQSDEDKFNLVLLMMQKLYALVAGQCSAD 364 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 + + D + AL + + + E L + Sbjct: 365 NPDSLMHHEILLPGILMQIFVREKLQDALHKAKIALNREFEE--NPNHASADDGEWLSQV 422 Query: 388 LFFSEDRYDLSAVGRMK-----FNRSLLREEIEGSGILSKDDIIDVMKKL 432 + + ++ + + + SG D ++ M+ + Sbjct: 423 AIEAITKTNIGRLAEYFLATGNLSSRTGLGLTQTSGFTIVADKLNYMRYI 472 >UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=Eukaryota RepID=Q2I5U5_BATDE Length = 1202 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 119/723 (16%), Positives = 216/723 (29%), Gaps = 140/723 (19%) Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 CP ETPEG GL+ +LS+ G P + + + + +S Sbjct: 609 CPAETPEGQACGLVKNLSLMGYITV-GSPAPPILEFLEEWTMESLEEISPSTIPTATKIF 667 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 N + LV+ + S+ +V + Sbjct: 668 LNGQWVGIHRDPDQLVSTLRRLRRSVDVSPEVSVVRD------------------VRDRE 709 Query: 679 ALMGANMQRQAVPT--LRADKPLVGTG-MERAVAVDSGVTAVAKRGGVVQYVDASRIV-- 733 + + R A + ++ LV T M + + D GVV+Y+D Sbjct: 710 LRLCTDAGRIARSLFVVTPEQSLVLTKEMVQQLHEDQIQWKDLLSYGVVEYIDTEEEETV 769 Query: 734 -IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 I + D++ + R T + V PS LG Sbjct: 770 MICMTPDDLAEARMAAAGQVV---ERHQVGTGRLKSATVYTRNY----THCEIHPSMILG 822 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 + + +P+ +N + + + + + R + Sbjct: 823 -------ICASIIPFPDHNQSPRSVY--QSAMGKQAMGLFLTNF--QLRMDTMSNILFYP 871 Query: 853 DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 912 P A+ L + AI + Sbjct: 872 QKPLATTRAMEF-------------------------MHFRDLPAGINAVVAIACYSGYN 906 Query: 913 VKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD-----LSEELQIL 967 +DS + + + + ++ R ++++K+ I L++ +D + L Sbjct: 907 QEDSLIMNQSSID-RGLFRSLYYRVYMDQEKKVGMISTETLEKPSRDTTLRLKHGTYEKL 965 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 E + + K + D E + ++ + + Sbjct: 966 EDDGLIAPGVRVSGEDIIIGKTVPIAADST--------ELGQRTTMHTKRDASTPLKSTE 1017 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + IT D K VKV + R GDK A RHG KG + EDMP+ Sbjct: 1018 NGIVDQVLITTNQD----GFKFVKVRVRSIRIPHMGDKFASRHGQKGTVGITYRTEDMPF 1073 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 +G D+++NP +PSRM IG ++E L + GD+ +A V + + +Q Sbjct: 1074 TADGITPDLIINPHAIPSRMTIGHLVECLLSKVSTFTGDEGDATPFTDVTVEAISQALQG 1133 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + G + V Sbjct: 1134 YGYQRRGFEVLYNG---------------HTGRKLNAQV--------------------- 1157 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G Y +L H+VDDK+H+R+ G ++T+QP+ G+++ GG Sbjct: 1158 ------------------YTGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGG 1199 Query: 1268 QRF 1270 RF Sbjct: 1200 LRF 1202 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 24/153 (15%) Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGS 508 +R+ G + FR+ ++ + V L + + + I+ K + Sbjct: 2 KRLDLAGPLLGGLFRMLFRKLTKDVSRYLQITMESGREFNLSLAVKSSTITNGPKYSLAT 61 Query: 509 SQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 SQ +++ S ++H RR++ + R+ + R +H TH+ Sbjct: 62 GNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRLNT----PIGRDGKLAKPRQLHNTHW 117 Query: 556 GRVCPIETPE-----GPNIGLINSLSVYAQTNE 583 G VC E G ++ L+ L A + Sbjct: 118 GMVCLSGDTEVVLGNGMDVVLLTDLVDGACVST 150 >UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FY16_DUNSA Length = 924 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 141/406 (34%), Positives = 208/406 (51%), Gaps = 42/406 (10%) Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 + + + + +I L+ ++ ++ + + +G + Sbjct: 516 SINDNKILSQQNKISSENLRSGTREGTKNFSLGQNNKIVLSGK--FSGQSRVINFSNFSQ 573 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + + Q + KKL+ K K + ++ + +YL Sbjct: 574 LSSYTKKFRKNPRVLRTLQTLVDGQLKNLKIMKKLKNKAEKGGFVSTKSIKDIETIHIYL 633 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR+IQ GDKM+GRHGNKG++S+I P++DMP+ +GTP+D+VLNPLGVPSRMN+GQI E Sbjct: 634 AEKRKIQVGDKMSGRHGNKGIVSQILPMQDMPFLPDGTPIDMVLNPLGVPSRMNVGQIYE 693 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 LG+A K +G+ + G + + S + + Sbjct: 694 CLLGLAGKYLGEHYKISSFDE--------------IYGPEASRSFVFSKLYEARCKTGFK 739 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 L + G+IRLYDGRTG+ + +PVTVG YML+ Sbjct: 740 -------------------------WLFNPQYPGKIRLYDGRTGDCYHQPVTVGQSYMLR 774 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+VDDK+H RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLTVK Sbjct: 775 LVHMVDDKIHMRSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWALEGYGAAFTLLEMLTVK 834 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SDD+ GR ++ N++ G PE+F VL+ E+++L ++I L Sbjct: 835 SDDLTGRMTLWSNLILNKDL-TIGTPEAFKVLICELQALCLDIGLY 879 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 115/289 (39%), Gaps = 31/289 (10%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y L + RSNQ+TC+ P V G+ V+ GD L D ++ GEL+LGQN+ +A+MPW GY Sbjct: 95 YKLETFHRSNQDTCLTHKPAVFEGDWVQSGDFLTDCANSVGGELSLGQNIFIAYMPWEGY 154 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 NFED+IL+SER+V +D FT++HI+ + ++ + E SK Sbjct: 155 NFEDAILISERLVSDDLFTSVHIERYEIENIQKDGISQQERLTNKEINEKMKSK------ 208 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 K T E + K S + +S + + +S Sbjct: 209 --------------EKQTVARSAIRADENREYARKQNLKNSQTRQTSQKTKSNIS----- 249 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 Q+ T E + ++ ++ + I++ G +LV K D Sbjct: 250 -QIRTTRYEEITRDIPDVTPEEICHL-----DSFGIVKIGSIVEEGDILVGKITPINKKD 303 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 P + L L + + + L + K+ K + + Sbjct: 304 FTPYQKLLYTILDKQIRPYRDSSLRAPKGIKAKVIDIKIFVKPGSVVRS 352 Score = 86.9 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 79/200 (39%), Gaps = 2/200 (1%) Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 T+ + R T+ EEIT DIP+V + LD GIV IG+ V GDILVGK+T Sbjct: 240 TSQKTKSNISQIRTTR--YEEITRDIPDVTPEEICHLDSFGIVKIGSIVEEGDILVGKIT 297 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 P + TP +KLL I ++ +DSSLR P G+ VID+++F + G Sbjct: 298 PINKKDFTPYQKLLYTILDKQIRPYRDSSLRAPKGIKAKVIDIKIFVKPGSVVRSPFAYS 357 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 + K S+ + + + +R + + Sbjct: 358 SKFLKTDPPKRSSKLEKSKKVRVKARSEEKSFDFSSPKKNNLIVRSSPVKAAPKQKRNAY 417 Query: 1009 NQLEQLAEQYDELKHEFEKK 1028 QL + L K Sbjct: 418 LQLLKKISSSSNLNKFIHIK 437 >UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=Euryarchaeota RepID=RPOB1_METVS Length = 611 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 135/767 (17%), Positives = 242/767 (31%), Gaps = 190/767 (24%) Query: 607 SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGAS 666 + YV + + + V+ L R G+ S +S Sbjct: 1 MEKQANVYVNGKLIDTSKDPENLVKSLRIQRRSGKL-------------SPNTSIS---- 43 Query: 667 LIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME--RAVAVDSGVTAVAKRGGVV 724 ++++N + + R P + + E V + + GV+ Sbjct: 44 -----FNEESNDIHISTDGGRAVRPLVVVENGFSKLTNELLEKVNNNELTFEYLVKTGVI 98 Query: 725 QYVDASRIV---IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 +++DA I + DE+ ++I L Sbjct: 99 EFLDAEEEENARIAMYNDEITFENTHVEIDPL---------------------------- 130 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 + LG VA P+ +N I ++ + ++ + R Sbjct: 131 ------------VILGIGAGVA--PYPEHNSAPRITMAAAMGKQSLGIPMA----NIKWR 172 Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 G +P V L + + Sbjct: 173 MDTRGHLLHYPQVPLVRTKHQEILGFD-------------------------KRPAGQNF 207 Query: 902 LRAIFGEKASDVKDSSLRVPNG-VSGTVIDVQVFTRDGVEK---DKRALEIEEMQLKQAK 957 + A+ + +++D+ + G + + EK + + E + Sbjct: 208 VVAVMSYEGYNMEDAFVINKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRG 267 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 E + L + + + +G V K E+ L + Q + + + Sbjct: 268 YRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQEITLQTKS-QRRDTSVTIR 326 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + E ++ KV + R + GDK A RHG KGVI Sbjct: 327 HGEEG-----------VVDLVILSETKEGNRLGKVRVRDLRVPEFGDKFASRHGQKGVIG 375 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 + P ED+P+ E+G D+++NP H + IG + Sbjct: 376 LVVPQEDLPFTEDGVIPDLIINP---------------HAIPSRMTIGQVL--------- 411 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 E++ + + +F G E ++ Sbjct: 412 ------------------------------EMIGGKVGSLECRRVDGTIFSGEGEWALRH 441 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L+ SG+ +YDG+TG + E + VG Y KL+HLV K+HARS G ++T+Q Sbjct: 442 ALENYGFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQ 501 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN---------- 1307 P G+A+ GG RFGEME L A+GAA L+E L +SD Sbjct: 502 PTEGRAREGGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIAIFDYKRG 561 Query: 1308 ------------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 I D + +F +LL E++S+GI+ +L+ + Sbjct: 562 MKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLKLK 608 >UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular organisms RepID=Q67ZK6_ARATH Length = 639 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 94/450 (20%), Positives = 168/450 (37%), Gaps = 76/450 (16%) Query: 922 NGVSGTVIDVQV--FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 NG + V + ++ +A M + + E+ ++ ++ ++ Sbjct: 235 NGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSEKRKKMDELV 294 Query: 980 VAGGV--EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRK 1035 G + K+D L D + +G + + E +K + ++ ++ Sbjct: 295 QFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVV 354 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 ++ D+ V L R GDK + HG KGV+ + ++ P+ G D Sbjct: 355 LSSNDE----GKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPD 410 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 IV+NP PSR GQ+LE L I ++++ A + + A Sbjct: 411 IVINPHAFPSRQTPGQLLEAALSKG-------IACPIQKEGSSAAYTKLTRHA------- 456 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 F EI E L G R+Y+G Sbjct: 457 -----------------------------TPFSTPGVTEITEQLHRAGFSRWGNERVYNG 487 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 R+GE + +G + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME Sbjct: 488 RSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 547 Query: 1276 WALEAYGAAYTLQEMLTVKSD----DVNGRTK-------------------MYKNIVDGN 1312 L A+GA+ L E L SD + + K + V + Sbjct: 548 DCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSD 607 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 H + +P +L +E+ S+GI + + E Sbjct: 608 HVVRVYVPYGAKLLCQELFSMGITLNFDTE 637 Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 65/463 (14%), Positives = 131/463 (28%), Gaps = 72/463 (15%) Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD----EEGHFV 630 +S+ + LE+ K+ +E+ + N + + FV Sbjct: 1 MSLLGLVSTQ-SLESVVEKLFA-CGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFV 58 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 +L + R + E + D D + ++ + L+ L + + L + Sbjct: 59 AELKSRRRQSELPREMEIKRD-KDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPF 117 Query: 691 PTLRAD-------------------------KPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 L +P + T E + + VV Sbjct: 118 DHLLDHGILELIGIEEEEDCNTAWGIKQLLKEPKIYTHCELDL-----SFLLGVSCAVVP 172 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 + + + + + + I + R + + P L + + Sbjct: 173 FANHDHGRRVLYQSQKHCQ-QAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLA------- 224 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR---- 841 L GQN VA GYN EDSI++++ ++ F + I+ Sbjct: 225 SECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDS 284 Query: 842 -DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 K E + + + L++ G +IGA ++ GDI++G+ T G Sbjct: 285 EKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESG--------- 335 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 D S+++ + G V V + + D + + K Sbjct: 336 -------------ADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFS 382 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 S Q G + + P Sbjct: 383 SMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPG 425 >UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax=Eimeriorina RepID=RPOB_EIMTE Length = 1059 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 178/849 (20%), Positives = 336/849 (39%), Gaps = 32/849 (3%) Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 I Y G L + + T + + T ++ + +I+ Sbjct: 31 NSIKNYLGDKLYLYYKKNKYTIYILSDFLFFKTTNLTSNITDTVQEFNSKILIFLPLKIK 90 Query: 234 DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 + K + L GE + IE N + K I+ + K I+ + Sbjct: 91 NLKNNKYKIIYYLLGEIPKYTIEKNLIINGLKKTFISKLMFNYIGIFFNKFIKNNNNILY 150 Query: 294 GKVVAKDYIDESTGE---LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 K++ D + DL+ L G + + + Y+ + Sbjct: 151 AKIIFNDKFIINIVLEENKCYCIFNNYKYDLICFLYLLGISMQDIFIFSRYNKSFYLKKL 210 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL- 409 L P+ + + + S F NL F + Y + K N Sbjct: 211 LLTLPSLNINNIINYNIFKY-----------LSFFFNLSFKLNTYYIFNKVLNKNNSLYS 259 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 + S L D I+++ L+DI+ K + D+D L R I ++G NQ+ L Sbjct: 260 YIKNFSNSNNLIALDFINILDILLDIKYNKKNITDLDLLEYRSIFTLGNYFTNQYSFYLK 319 Query: 470 RVERAVKERL--SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 + + + + +L+ + +KE+ + L Q+++Q N SEI HK Sbjct: 320 KFSNILHNDIFKCIKNLEKYKLNTNSFKSKLYFNLKEYLTVNPLVQYLEQINSFSEIIHK 379 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 R++ ++ + ++R+++ G +C I+T EG N GL+ S + + + Sbjct: 380 NRVTNYN----SKLKQNLQIRNINLNQLGSLCLIDTTEGINCGLVISFTKNIKIEKRNNF 435 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 + PY V + + I ++++ + Y++ N L + F +K L + Sbjct: 436 QFPYLPVLNIKTKNFITFINSFLQQTYIVLFNNYYLRKNKLF-NFFNLSLNKNSFKLKNI 494 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 + + + + S +LIPF+ ++D R LMGA MQ Q VP L+ + ++ TG E+ Sbjct: 495 SIQNMIYIKPMDMFSFAENLIPFIFYNDPARVLMGAKMQSQIVPILKNKRSIIITGYEKN 554 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 + + + A + G+V YV + +I+I+ + Y L KY RSN T ++ Sbjct: 555 LLNSTNLILKAYQEGIVVYVSSYKIIIRDLYNRK-------ITYFLDKYKRSNHFTILHS 607 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V GE + G +L E G N+ V++ + GYNFED+I+++++++ Sbjct: 608 KPNVWQGERIFCGQILTSTQDILFSEYIGGNNLLVSYGNFFGYNFEDAIVLNKKIIYSQL 667 Query: 828 FTTIHIQELACVSRD-TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 FT++H + + K E T ++P + LD GI+ G++V DILV K Sbjct: 668 FTSLHFKVYEIIFNSLNKFSFEISTINLPKKSFYSKRNLDFFGIIKEGSKVLNNDILVSK 727 Query: 887 VTPKG-ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK-DKR 944 + L P L+ +FG++ ++KD S+ V G SG ++ ++F+ K Sbjct: 728 IFITNINISLLPLYNLIYILFGKEIKNIKDKSILVSFGNSGRIVKTELFSYSSKIKSYLG 787 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 + + + + + G I +L + + +P LG+ Sbjct: 788 YYLKCRVYICKQRLLSVGDKLCGRYGNKGIIAYILPSNDLPYTNTGIIPDIISDSLGIPS 847 Query: 1005 EEKQNQLEQ 1013 QL + Sbjct: 848 RMNIGQLFE 856 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 116/515 (22%), Positives = 205/515 (39%), Gaps = 53/515 (10%) Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 +++ + RD + + L V+ G + G IL Sbjct: 572 VYVSSYKIIIRDL-YNRKITYFLDKYKRSNHFTILHSKPNVWQGERIFCGQILTS-TQDI 629 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 ++ LL + + +D+ + + + F + + E Sbjct: 630 LFSEYIGGNNLLVSYGNFFGYNFEDAIVLNKKIIYSQLFTSLHFKVYEIIFNSLNKFSFE 689 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL-------DKLPRDRWLELGLT 1003 + K + L+ + + ++ + K+ LP + + Sbjct: 690 ISTINLPKKSFYSKRNLDFFGIIKEGSKVLNNDILVSKIFITNINISLLPLYNLIYILFG 749 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 E K + + + + + +L + KI G +VY+ +R + G Sbjct: 750 KEIKNIKDKSILVSFGNSGRIVKTELFSYSSKIK----SYLGYYLKCRVYICKQRLLSVG 805 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DK+ GR+GNKG+I+ I P D+PY G DI+ + LG+PSRMNIGQ+ E G++ Sbjct: 806 DKLCGRYGNKGIIAYILPSNDLPYTNTGIIPDIISDSLGIPSRMNIGQLFENLFGLSCYF 865 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 + ++ ++ + + + Sbjct: 866 LNKRLCISNTFNLPKVYIKTILYNYINNIKEKSGN------------------------- 900 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 L + + + G+I L DGR G + P +G KL H++ DK+ Sbjct: 901 ---------------LWIYNSYSPGKILLRDGRQGYKLSEPSFLGISKYSKLIHMIKDKI 945 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 H R+ G Y+ + QQP+ G+ + GGQRFGEME+WA+EAYG++Y L+E+L KSDD+ RT Sbjct: 946 HYRTIGPYTELMQQPVKGRNKKGGQRFGEMEIWAIEAYGSSYNLRELLNYKSDDIIARTS 1005 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 + N+ + ESF L++EI S+ +NIE Sbjct: 1006 LLSNLDNNIILDNITTTESFRTLIREIHSMNLNIE 1040 >UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 3 RepID=RPB2_IIV3 Length = 1140 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 141/1030 (13%), Positives = 315/1030 (30%), Gaps = 144/1030 (13%) Query: 16 GKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYR 74 L+ Q+++F FI + GL+ + I+ N L++ + Sbjct: 21 KIVADYFKTNGLVKHQIETFNHFISK------GLKTIINNESSIKYQSHDNYSLKFTNIY 74 Query: 75 LGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 + P QE + + ++Y+ + V + + + ++ V + Sbjct: 75 VEYPSIIDDDRTIRDLYPQEARNKDLSYTGNVCVNV--IEMVENKEGKPPQISEQYRVPI 132 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 +IP+M + ++ K N +G + Sbjct: 133 AKIPIMLGSDVCHLS-----------------------KYTPLENEQINGHSQADQGGY- 168 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 F + K+ + + R+ +++ + + ++ + + + V Sbjct: 169 -FIINGKERVLISQVRKAYNKPVCFVKSTSQKEDVLIC-----EMRSMCEETFHSTSVQV 222 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 ++ ++ K+ + L + ++ + YID Sbjct: 223 KMIKNKIMVSLKLKRKLI----DIPVGIVFKCLGYNPDQMGSKFRSLFNLPPEYEKYIDA 278 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + + +++ + D+ +V Sbjct: 279 IKNDCLEEFAYGIAVSAAD------------------GDNSDSGGESGGEEEADQEEHIV 320 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 +++R M A + D+ M L + D Sbjct: 321 KVFRNMSTSVDKDGGMAATGIT-------IEDVQKSLDMDLFPHLGI---TSTRKQRVDL 370 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--LG 482 + ++KK + K VD+ D ++R+ + GE+ FR+ + ++ ++ Sbjct: 371 LAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRLLYKKFQKTCITQIRNRKP 430 Query: 483 DLDTLMPQDMINAKPISAAVKEFFG-------SSQLSQFMD-QNNPLSEITHKRRISALG 534 D+ + I + + ++G + +SQ ++ + + L+ + RR+ + Sbjct: 431 DISNFLRTSGITTGILYSFSSGYWGVQRNTYIRTGVSQVVNPKVSLLANYSSLRRV-VIP 489 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 +E E+R +HP+ VCP+ETPEG +G + +++V+ Q G Sbjct: 490 ESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTVLNMAVFCQVTT-GISTCEIMDQ 548 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 D D + + + N ++ N + GH + + V Sbjct: 549 IDSFGVDLKCHCTIKDPNNCLLLLINGSPYGNGH----ANVIHRLNFLNDTNISIVVNRA 604 Query: 655 VSTQQVVSVGASLIPFLEHDDA-----------------NRALMGANMQRQAVPTLRADK 697 + ++ S I + D N+ + ++ A ++ + Sbjct: 605 LGVIEIFSDAGRFIRPIFDLDKICNFEGEIVPSFKWFLDNQLIRYIDINEAAANSIAIEL 664 Query: 698 PLVGTGMERAVAVDS--GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 + T + G++ + D ++ M G + K Sbjct: 665 RDLSTNPNTRYNLMELDPCGMFGIVAGIIPFPDRTQSARNCFYSSMVKQAIGFVPCHNLK 724 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 + Q P V+ E + E G N VA + GYN EDS Sbjct: 725 TETVSHTLNYPQKPLVTT-SFAEYNQL---------NEYPNGINAIVAIACYTGYNQEDS 774 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPE--EITADIPNVGEAALSKLDESGIVYI 873 I++++ + F TI + + E EI ++ + + + GIV + Sbjct: 775 IILNKSSIDRGLFGTITYNTFTAQEKKNGIIEERIEIPSNAIKIRDCNYGLVGPDGIVRL 834 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 V GD+L+ KVT K + Q + DSS+ V +G G V + V Sbjct: 835 RQRVKKGDVLICKVTIKNKNQDE---------------KLVDSSVIVQHGEEGYVDRI-V 878 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 + + + + + K S Q G+ + + P Sbjct: 879 DNVIDGCRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINP 938 Query: 994 RDRWLELGLT 1003 + + Sbjct: 939 NCIPSRMTIN 948 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 93/437 (21%), Positives = 156/437 (35%), Gaps = 67/437 (15%) Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 +G V + G ++ + + + ++ + I + Sbjct: 753 YPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFTAQEKKNGIIEERIEIP 812 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + D + + ++ + + L + ++KL + G++ Sbjct: 813 SNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIKNKNQDEKLVDSSVIVQHGEEG 872 Query: 1043 A--------PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 +IVKV + R + GDK KG I P EDMP+ +G Sbjct: 873 YVDRIVDNVIDGCRIVKVVIGQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTP 932 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 DI++NP +PSRM I QI+ T +G Sbjct: 933 DIIINPNCIPSRMTINQIISTVMGK----------------------------------- 957 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 + + N R + E+ LKL SG +Y Sbjct: 958 --------------LYTVNPNPRFRNGNSFQENSNTILKELCHHLKLNGFDPSGSEVMYS 1003 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 G TGE+ + + +G Y +L H+V DKMHARS G + + +QP G++Q GG RFGEME Sbjct: 1004 GFTGERIQSTIFMGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEME 1063 Query: 1275 VWALEAYGAAYTLQEMLTVKSD----DVNGRTKMY------KNIVDGNHQMEPGMPESFN 1324 + +GA L E + + SD DV M + + +P S Sbjct: 1064 KDCILVHGATQFLNERMFLNSDPFQIDVCKDCGMMSSTSKKCHHCGSINVKRCNIPYSCK 1123 Query: 1325 VLLKEIRSLGINIELED 1341 LL+E+ +GI +++ Sbjct: 1124 NLLQELNGMGIKTKIDL 1140 >UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2EN74_TRIVA Length = 1104 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 125/929 (13%), Positives = 251/929 (27%), Gaps = 121/929 (13%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 +P + + + + LR + V+ Sbjct: 112 NIPVMVNSDLCHLKGLTPQEKGALMEEPTEAGGYFIYSGYEKLLRL----LILNRQNYVF 167 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 +R P Y + ++ + L Sbjct: 168 ALNRPSFHSRGPTFTNFATSFRSMAPDCSSIT--TNVHYQNTGNMVVLIPIQRRMFFVPL 225 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND-RLSALVEIYRMMRPGEPPTREAA 381 L L I E++ + ++ R + TR A Sbjct: 226 PIL----------LRALVEVDDRTIYESICGQNPDSFYSDRVIATLRYASELDIHTRAGA 275 Query: 382 ESLFENLFFS----EDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 F + + + R+L + + D +I + ++L+ + Sbjct: 276 RDFLGAHFRTVLQCPRHFTNEECCEVLLKRNLFPHLSDEAPSKKFDLLIYMTRRLLQLVK 335 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK------ERLSLGDLDTLMPQD 491 G+ D++D + + G + + +A E+ ++ D D L Sbjct: 336 GEILPDNMDANSAHELLTPGTLWLPALSDAITDFLKATAANVYKDEKNAIDDFDALQTIL 395 Query: 492 MINAKPISAAVKEFFGSS--------------QLSQFMDQNNPLSEITHKRRISALGPGG 537 NA + ++ F + LS ++ N + H R ++ G Sbjct: 396 KKNASGVENRMRYLFSTGSLRGNSTLGLSQTEGLSIIAERINYCRYLAHFR---SVHRGA 452 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE---YGFLETPYRKV 594 VR + P +G +CP+ TP+G GL+ L+ + + GF E Sbjct: 453 FFTTMKTTAVRYLLPESWGFMCPVHTPDGGLCGLLTHLARFCEIVTGDSQGFKEIVQIFT 512 Query: 595 TDGVVTD-EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 G+V + + V+ L VE L T R KG + Sbjct: 513 NYGMVPFLGSGDMVPVIVDGRVVGSIRERLSSAA--VEALKTARRKGIIPKMA------- 563 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAVD 711 +++ S S+ FL R + Q Q P + + + + A Sbjct: 564 EIADLPAGSFTRSIYVFLNQQRMMRPVFNVKAQEQEYAGPLEQIFMDIASNPKDESKAYR 623 Query: 712 S--GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 ++ + + D ++ + + +M G + + + T P Sbjct: 624 EIHHTAMLSLIASLTPFSDYNQSPRNMYQCQMAKQTMGYPSHR--EAASTEVKTYHVHYP 681 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 + +E+ D + + + LG N VA + + GY+ ED++L+++ V+ Sbjct: 682 QRPIVRTMEQ-----DSHALE--DFLLGTNACVAVLSYTGYDMEDALLINKCSVERGFGH 734 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 + + + G LD G+ ++G V+ G L+ P Sbjct: 735 GCIYKTHRYTAEE---IESNSYFCNTKDGVIVDPDLDADGLPFVGQRVSKGCKLLRVYNP 791 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK--DKRALE 947 K K+ + +G G V V T D ++ Sbjct: 792 KEN---------------------KERIMSYKDGEDGFVDKVITTTSDDGKRVLSVVLKF 830 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD--- 1004 K S Q + + P + + Sbjct: 831 RMVRTPTIGDKFSSRHGQKGVFSFPWPQENMPFCENGITPDVIINPHAFPSRMTIGMLIE 890 Query: 1005 ---------------EEKQNQLEQLAEQYDELKHEFEKKLEAK-----RRKITQGDDLAP 1044 + ++ DE+ K+ G+ Sbjct: 891 SMCGKLRASQDCAFFDATPFTHDEKNRITDEVGQMLAKEGFEYYGNEAMYSGITGEQFKA 950 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNK 1073 + V Y ++ GDK R K Sbjct: 951 DIFMGVVYYQRLRH--MVGDKYQVRATGK 977 Score = 329 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 100/480 (20%), Positives = 164/480 (34%), Gaps = 76/480 (15%) Query: 888 TPKGETQLTPEEKLLRAIFGEK--ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 P + E K + ++ ++ S + + + GT V V + G + + Sbjct: 662 YPSHREAASTEVKTYHVHYPQRPIVRTMEQDSHALEDFLLGTNACVAVLSYTGYDMEDAL 721 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 L + + + A D L D +G Sbjct: 722 LINKCSVERGFGHGCIYKTHRYTAEEIESNSYFCNTKDGVIVDPD-LDADGLPFVGQRVS 780 Query: 1006 EKQNQLEQL--AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 + L E + + + + + IT D VL +V + + R G Sbjct: 781 KGCKLLRVYNPKENKERIMSYKDGEDGFVDKVITTTSDDGKRVLSVV-LKFRMVRTPTIG 839 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DK + RHG KGV S P E+MP+ ENG D+++NP PSRM IG ++E+ G Sbjct: 840 DKFSSRHGQKGVFSFPWPQENMPFCENGITPDVIINPHAFPSRMTIGMLIESMCGKLRA- 898 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 + D + F+ +E R+ Sbjct: 899 -----------------------------SQDCAFFDATPFTHDEKNRIT---------- 919 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 E+ ++L G +Y G TGEQF+ + +G +Y +L H+V DK Sbjct: 920 ---------DEVGQMLAKEGFEYYGNEAMYSGITGEQFKADIFMGVVYYQRLRHMVGDKY 970 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV----N 1299 R+TG + +T+QPL G+ + GG R GEME L A G + L++ SD Sbjct: 971 QVRATGKMNNITRQPLKGRKKGGGIRLGEMERDGLLAQGVTFLLRDRFMWCSDGHVAKLC 1030 Query: 1300 GRTK-----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R + +P L E ++ I ++ E Sbjct: 1031 NRCGSFMFTQTKHDENGVEETYCTYCKKSGNCTSVYVPYVLRYLCAEFAAMNIRMKFSTE 1090 >UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepID=B3RKF5_TRIAD Length = 780 Score = 325 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 102/493 (20%), Positives = 173/493 (35%), Gaps = 95/493 (19%) Query: 884 VGKVTPKGETQLTPEE----KLLRAIFGEKASDVKDSSLRVPNGVSGT-VIDVQVFTRDG 938 + ++TP + +P ++ + G K S + G + D + + Sbjct: 349 LARLTPFSDFNQSPRNMYQCQMGKQTMGTPIQSFKYRSDNKLYRIQGYDMEDAMILNKSS 408 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 VE+ I + ++ A + LD LP+ + Sbjct: 409 VERGFAHATIYKSEVINLNSK--------TADGLEIFGQTPGTTDSDNIDLDGLPK---I 457 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 L + L+ + + ++ G D L+ + V ++R Sbjct: 458 GSILNSGDPYYCTLNLSTSQCVVHYYRGQEQGIVDDVKLLGSDSGRKPLQRICVKFRIER 517 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 GDK + RHG KGV S++ PIE+MP+ E+G DI+ NP G PSR Sbjct: 518 NPIIGDKFSSRHGQKGVCSQLWPIENMPFTESGMTPDILFNPHGFPSR------------ 565 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 IG I +M + + D + F E + Sbjct: 566 ---MTIGMMIESMAGKSASL----------------HGLCHDATPFQFSEKV-------- 598 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 + + L+ G R+YDG +GE+FE + +G +Y +L H+ Sbjct: 599 -----------SAVDYFGKYLEKAGYNYFGTERMYDGMSGEEFEANIFIGTVYYQRLRHM 647 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD-- 1296 + DK R+TG +T+QP+ G+ + GG RFGEME AL ++G ++ LQ+ L SD Sbjct: 648 ISDKFQVRTTGPIDSLTRQPVQGRKRAGGVRFGEMERDALISHGTSFLLQDRLLNCSDKS 707 Query: 1297 --DVNGRTKM-------------------------YKNIVDGNHQMEPGMPESFNVLLKE 1329 V + + +P + L+ E Sbjct: 708 VAHVCKKCGSVLGITTDVNKNEADIFREFSRKVYRCTTCDSTQEVTKMYLPYVYLYLVTE 767 Query: 1330 IRSLGINIELEDE 1342 +L I +E E Sbjct: 768 FAALNIKAVIEVE 780 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 88/632 (13%), Positives = 179/632 (28%), Gaps = 94/632 (14%) Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 + N + +I +++KL + NG+ +++ D N+ I G M Sbjct: 3 NCLFNNLRNCIAVHLDRNEDKFNLLIYMIRKLYAVANGECQIESQDSPMNQEILLGGHMY 62 Query: 461 ENQFRVGLVRVERAVKE-------RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 + L VK + + L+ + + N I ++ F + L Sbjct: 63 SMVLKEKLELWLSRVKNLILKYMAKTNDEKLENAIVRAANNGTNIPNQLEYFLATGNLVA 122 Query: 514 --------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 D+ N + ++H R ++ G E VR + P +G +C Sbjct: 123 RADLGLMQVAGYVLVADRLNFMRFVSHFR---SVHRGSFFTEMRTTAVRKLLPEAWGFLC 179 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQA 619 P+ TP+G GL+N L+ + T + + +V+ Sbjct: 180 PVHTPDGAPCGLLNHLAASCKVVTKMSDTTKLVSTLYELGMLSLSDPLIEYSSAHVVILD 239 Query: 620 NSNL-----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 + + + L + + ++ + + L F Sbjct: 240 GKIVGYIQKEIGKEIADKLRYLKINNMDMVDPSTEIALVHDGI---SGLYNGLYLFTSPA 296 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 R + +Q+Q + G V +D +TA V Sbjct: 297 RMIRPVTNLRLQKQEMI-----------GTFEQVFMDICITAEEAYAEVTT-------HQ 338 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 +++ M + + + +S +N QM ++G P++ +D Sbjct: 339 ELSPCSMLSA--LARLTPFSDFNQSPRNMYQCQMGKQTMGTPIQSFKYRSD--------- 387 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 N GY+ ED++++++ V+ + EI Sbjct: 388 ----NKLYRI---QGYDMEDAMILNKSSVERGFAHATIYKSEVINLNSKTADGLEIFGQT 440 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 P ++ +D G+ IG+ + GD + S + Sbjct: 441 PGTTDS--DNIDLDGLPKIGSILNSGDPYYCTL---------------------NLSTSQ 477 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKR---ALEIEEMQLKQAKKDLSEELQILEAGL 971 G V DV++ D K + E K S Q Sbjct: 478 CVVHYYRGQEQGIVDDVKLLGSDSGRKPLQRICVKFRIERNPIIGDKFSSRHGQKGVCSQ 537 Query: 972 FSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 I + + P + + Sbjct: 538 LWPIENMPFTESGMTPDILFNPHGFPSRMTIG 569 >UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 Tax=Neoptera RepID=RPA2_DROME Length = 1129 Score = 323 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 111/844 (13%), Positives = 244/844 (28%), Gaps = 107/844 (12%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + +A N ++ F I N K+ Sbjct: 136 VPIMLRSKACNLGQATPEEMVKHGEHDSEWGG----------------IFVIRGNEKIVR 179 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEY-IAGKVVAKDYIDESTGELICAANM-ELSLDL 321 I + + + + V +D S + Sbjct: 180 MLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSH 239 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 + +LS I + D Y + +S + + R ++ T Sbjct: 240 VKRLSYVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQC 299 Query: 382 ESLFENLF-----FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 +S NLF + V ++ + I+ +++KL Sbjct: 300 KSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIH--LDTYEDKFQLIVFMIQKLFQCA 357 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQF----RVGLVRVERAVKERLSLGDL---DTLMP 489 GK +V+++D + + G + + + +V R ++++L+ D +M Sbjct: 358 QGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMT 417 Query: 490 QDMINAKPISAAVKEFFGSSQ--------------LSQFMDQNNPLSEITHKRRISALGP 535 Q M A + A++ F + L + N + ++H R A+ Sbjct: 418 QCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFR---AIHR 474 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF--LETPYRK 593 G E R + P +G +CP+ TP+G GL+N L++ + + L K Sbjct: 475 GSYFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPK 534 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNL------DEEGHFVEDLVTCRSKGESSLFS- 646 + + + E Y + + E V++L + G Sbjct: 535 HLIDMGMMPLSNRRYLGEKLY-VVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMME 593 Query: 647 ---RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV---PTLRADKPLV 700 + + A ++ + + R +++ + + P Sbjct: 594 IGFIPFKKNGQFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDF 653 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 T +E A ++ ++ D ++ + + +M G L ++ Sbjct: 654 TTHLELAK-----THFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPC--LNWPKQAA 706 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q P L PV ++ D + A+G N VA + + GY+ ED++++++ Sbjct: 707 NKLYRLQTPGTPLFRPVHYDNIQLD-------DFAMGTNAIVAVISYTGYDMEDAMIINK 759 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + + A P++ E + LD G+ + G++++ G Sbjct: 760 AAYERGFAYGSIYKTKFLTLDKKSS----YFARHPHMPE-LIKHLDTDGLPHPGSKLSYG 814 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV- 939 L F + + K +++ V ++ + Sbjct: 815 SPLYC-------------------YFDGEVATYK--VVKMDEKEDCIVESIRQLGSFDLS 853 Query: 940 -EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 +K K S Q + + P Sbjct: 854 PKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPS 913 Query: 999 ELGL 1002 + + Sbjct: 914 RMTI 917 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 100/445 (22%), Positives = 149/445 (33%), Gaps = 81/445 (18%) Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 GT V V + G + + + + + + + L S A Sbjct: 736 GTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARHPH---M 792 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF-EKKLEAKRRKITQGDDLAP 1044 E + L D G + K ++K + I Q Sbjct: 793 PELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSFDL 852 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 K+V + L V R GDK A R G KG+ S+ P ED+P+ E+G DIV NP G P Sbjct: 853 SPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFP 912 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 + I I M + A D + F Sbjct: 913 ---------------SRMTIAMMIETMAGKGA----------------AIHGNVYDATPF 941 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E + ++L+ G G RLY G G + Sbjct: 942 RFSE-------------------ENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTAD 982 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + G ++ +L H+V DK RSTG+ T QP+ G+ + GG RFGEME AL ++GAA Sbjct: 983 IFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAA 1042 Query: 1285 YTLQEMLTVKSDD----VNGRTK-----------------------MYKNIVDGNHQMEP 1317 + LQ+ L SD V + + D + Sbjct: 1043 FLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMI 1102 Query: 1318 GMPESFNVLLKEIRSLGINIELEDE 1342 +P SF L+ E+ S+ IN + Sbjct: 1103 EIPFSFKYLVTELSSVNINARFKLN 1127 Score = 71.1 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 90/296 (30%), Gaps = 69/296 (23%) Query: 3 YSYTEKKRIRKDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP-- 58 + R +F + P+ L + L +DSF + + GL+ + + + P Sbjct: 9 KTIPVLTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLT------VGLDNSAKHMIPNH 62 Query: 59 -IQSYSGNSELQYVSYRLGEPV------------FDVQECQIRGVTYSAPLRVKLRLVIY 105 + ++ S + +P + + V+YS V+L + Sbjct: 63 WLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVN 122 Query: 106 EREAPEGTVKDIKEQEVYMGEIPLMTDNG------------------------TFVINGT 141 + + +GE+P+M + FVI G Sbjct: 123 GVQKTPINM--------DLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGN 174 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPK--- 191 E+++ + K + ++ + + D + Sbjct: 175 EKIVRMLIMTRRNHPI-CVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTA 233 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 +F + R +P +IL+ L + + + +++ ++ + V LR Sbjct: 234 KFMFSHVKRLSYVPVCLILKCL---MDYTDEEIYNRLVQGYESDQYYVSCVQAMLR 286 >UniRef50_B9F8X6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=B9F8X6_ORYSJ Length = 1115 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 112/907 (12%), Positives = 259/907 (28%), Gaps = 133/907 (14%) Query: 156 FFDSDKGKTH-SSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 + Y+A ++ + +++ K I LP + A Sbjct: 162 YIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKRKPNFIIG---YLPIMLRSHACV 218 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 ++ ++ E F ++ KV + + + R I Sbjct: 219 LNG----------------KDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRII 262 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL--AKLSQSGHKR 332 + + V K ++++ L + ++ + + Sbjct: 263 IDTDSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGMESDQE 322 Query: 333 IETLFTNDLDHGPYISETLRV---DPTNDRLSALVEIYRM-MRPGEPPTREAAESLFENL 388 + + D +G + +++ + + AL + M PG +E Sbjct: 323 VAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSKSILRD 382 Query: 389 FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 F G+ ++++++D DD D++ Sbjct: 383 VFVA-----------------HVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYV 425 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD----TLMPQDMINAKPISAAVKE 504 GN+R+ G++ F + E ++ L I I+ ++ Sbjct: 426 GNKRLELSGQLISLLFEDLFKTMNSNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLER 485 Query: 505 FFGSSQL------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 + SQ + + + ++ + + RI+ + R R + P Sbjct: 486 AISTGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRIT----PQFEKTRKTSGPRALQP 541 Query: 553 THYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG 612 + C ++G + LS+ + E + + +G++ Sbjct: 542 SQ----C-------YSLG-VEDLSLLS--GEEIHASGSFLVMFNGLIL------------ 575 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 + F + R G F V+ + S G + L Sbjct: 576 --------GKHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQ-HCIHIASDGGRVCRPLI 626 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 D + + +Q +R+ + G+ + V+ A+ + ++ D + Sbjct: 627 IADKGIPRVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIA---LYEHEDQDDV 683 Query: 733 VIKV-NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 E+ P R++ + V P+ + Sbjct: 684 QRSSITHIEIEPLTILGLF-------RADSLLYL----LVYAQRPLLTTKTI---ELVGY 729 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 +L GQN VA M ++GY+ ED+I++++ + I +++ + G + Sbjct: 730 DKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDRI 789 Query: 852 ADIPNVGEA-----ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 + + LDE G G + DI V K TP+ + + Sbjct: 790 VKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDSGA-------- 841 Query: 907 GEKASDVKDSS--LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL 964 D KDS + +G + V V + + + + + + + K S Sbjct: 842 HLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRHG 901 Query: 965 QILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG--LTDEEKQNQLEQLAEQYDELK 1022 Q G + + L P G + +K + + ++ Sbjct: 902 QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSAFGEPSGNADKVEDISRTLVKHGFSY 961 Query: 1023 HEFEKKL 1029 + + Sbjct: 962 NGKDLLY 968 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 16/176 (9%) Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 P + K +I L +G+ LY G G + V +G +Y KL H+V D Sbjct: 937 FGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKLKHMVLD 996 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 KMHAR++G L+T+QP G+++ GG R GEME L AYGA+ + E L + SD + Sbjct: 997 KMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLISSDPYQVQ 1056 Query: 1302 TK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 +G + + MP + +L +E++++ + L+ Sbjct: 1057 VCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRLKL 1112 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 65/374 (17%), Positives = 124/374 (33%), Gaps = 54/374 (14%) Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 + G L + + M + G D L DG + ++ Sbjct: 610 HCIHIASDGGRVCRPLIIADKGIPRVKEHHMKQLRDGIRSF-DDFLRDG-LIEYLDVNEE 667 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV--SRDTKLGPEEITADIP 855 N +A + + +D VQ T I I+ L + R L + A P Sbjct: 668 NNALIAL--YEHEDQDD--------VQRSSITHIEIEPLTILGLFRADSLLYLLVYAQRP 717 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 + + + +GA + A+ D++D Sbjct: 718 LLTTKTIELVGYD---KLGA----------------------GQNATVAVMSYSGYDIED 752 Query: 916 SSLRVPNGVS---GTVIDVQVFTRDGVEKDKRAL-EIEEMQLKQAKKDLSEELQILEAGL 971 + + + + G I ++ +T + + I + Q + L + ++ L+ Sbjct: 753 AIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDRIVKPQRDKDGALLKQNMRALDEDG 812 Query: 972 FSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 F+ ++ + K + PR+ + G ++ + + + + Sbjct: 813 FAAPGLIIRNHDIYVNK--QTPRNTKRDSGAHLTDRDYKDSP------AVYKGVDGETTV 864 Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 R + D I+K + RR + GDK + RHG KGV I ED P+ E G Sbjct: 865 VDRVMLCSDTDEK---LIIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERG 921 Query: 1092 TPVDIVLNPLGVPS 1105 D+++NP G PS Sbjct: 922 ICPDLIMNPHGFPS 935 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 64/393 (16%), Positives = 133/393 (33%), Gaps = 59/393 (15%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS-YSGNSELQ-Y 70 F P L V L+ +DSF FI + G+ ++ I++ + + L+ Y Sbjct: 95 DKFALLPAFLKVRGLVKEHIDSFNYFITK------GIRNIVKANNRIEARNNPSIFLRQY 148 Query: 71 VSYRLGEP---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 S R+G P C++ TYSAP+ + + ++ + I Sbjct: 149 NSVRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKRKPNFI---- 204 Query: 122 VYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFF 157 +G +P+M + G F++ GTE+VI+ Q S Sbjct: 205 --IGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRII 262 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK-LPATIILRALNY- 215 K V + I + F K+ +++++++ K +P ++++A+ Sbjct: 263 IDTDSKGRVIASVTSSTHEIKSK----TVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGME 318 Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 + +++ + + E ER+ + + + +Y G + R Sbjct: 319 SDQEVAQMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSKS 378 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET 335 L V + V K + + L + L+ D G+KR+E Sbjct: 379 ILRDVFVAHVPVESGNFRPKCIY------TAVMLRRMMDAILNADTFDDKDYVGNKRLEL 432 Query: 336 LFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + +T+ + +I+ Sbjct: 433 SGQLISLLFEDLFKTMNSNAVELMNKTSEKIHS 465 >UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8I793_CHLRE Length = 720 Score = 322 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 105/466 (22%), Positives = 160/466 (34%), Gaps = 92/466 (19%) Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEA--GLFSRIRA 977 PNG + V V +T +E + + E L+ G + Sbjct: 304 FPNGTNAIVA-VLAYTGYDMEDAMILNKSAVERGLAHASLYKTECVNLKEERGGGGKQYF 362 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRK 1035 D++ D +G Q +Q + K +++ + Sbjct: 363 AATPHTQMTRDGDRIEPDGLPAVGSIIWPGQVFYATRDDQSGKSKSHKLKGEEVAVVDQV 422 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPV 1094 +G L G+ + + L R GDK A RHG KGV+S + P DMP+ G Sbjct: 423 GVEGRGLG-GLPQQANIRLRFNRNPMIGDKFASRHGQKGVLSILWPDTDMPFCAATGIRP 481 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 D+++NP PSRM IG ++E+ + GA Sbjct: 482 DLIINPHAFPSRMTIGMLVESLVSKG-------------------------------GAL 510 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 Q VD S F + V G L+ GQ + Sbjct: 511 AGQFVDASPFQRADG----------------VEKGNATERWGAYLERQGFSRYGQETMIS 554 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 G TG++ + +G +Y +L H+V DK RSTG + +T+QP+ G+ GG RFGEME Sbjct: 555 GVTGQEMPCDIYIGPVYYQRLRHMVSDKFQVRSTGPINAMTRQPIKGRKFGGGIRFGEME 614 Query: 1275 VWALEAYGAAYTLQEMLTVKSD----DVNGRTK--------------------------- 1303 +L A+GAAY L + L SD DV Sbjct: 615 RDSLLAHGAAYLLHDRLHACSDYHVADVCVSCGSLLAPLRKPAANADVTSNLMLGGGGGE 674 Query: 1304 -----MYKNIV--DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +P F L E+ ++ I +ELE + Sbjct: 675 GGGKTVCPVCCPGSSATIERVALPYVFRFLAAELAAMNIKMELEIK 720 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 68/542 (12%), Positives = 142/542 (26%), Gaps = 79/542 (14%) Query: 492 MINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISALGPGG 537 + + + + + L + ++ N ++H R ++ G Sbjct: 5 LKKLGDVGSKFEYLLNTGNLVSRSGLDLSQATGFTVVAEKLNFFRYLSHFR---SVHRGA 61 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 E VR + P +G +CP+ TP+G GL+N + G + Sbjct: 62 YFAELRTTTVRKLLPESWGFMCPVHTPDGAPCGLLNHFTAACSIVTQGSSNEELTSLGIM 121 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 V + A + + +G V RS ++ ++ + V Sbjct: 122 QVLTALGMSPAAPALSPPPPPDYLCVQLDGRVVG---HVRSGAAAAALVPYHLEVVHV-- 176 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 P L + + R P ++ + G V Sbjct: 177 -----------PPLLGGPFPGVFLFSQSARMIRPVVQVRGRGLRGGGGERGRKWGCVREW 225 Query: 718 AKRGGVVQYVDASRIVIKVNE-----------DEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 G+ + M G R++ Sbjct: 226 RHGEGLSVLHVHPLPRRRPRRQPRPGLHARRAGAMAKQTMGTPGQATQ--HRTDTKVYRI 283 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P + + + D E G N VA + + GY+ ED++++++ V+ Sbjct: 284 QTPQAPICRTIRYAEYKMD-------EFPNGTNAIVAVLAYTGYDMEDAMILNKSAVERG 336 Query: 827 RFTTIHIQELACVSRDTK-LGPEEITADIPNVG-EAALSKLDESGIVYIGAEVTGGDILV 884 + ++ + G ++ A P+ +++ G+ +G+ + G + Sbjct: 337 LAHASLYKTECVNLKEERGGGGKQYFAATPHTQMTRDGDRIEPDGLPAVGSIIWPGQVFY 396 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 K S ++ V V V R ++ Sbjct: 397 AT---------------------RDDQSGKSKSHKLKGEEVAVVDQVGVEGRGLGGLPQQ 435 Query: 945 ALEIEE--MQLKQAKKDLSEELQILEAGLFSRIRAVLV-AGGVEAEKLDKLPRDRWLELG 1001 A K S Q + + A L P + Sbjct: 436 ANIRLRFNRNPMIGDKFASRHGQKGVLSILWPDTDMPFCAATGIRPDLIINPHAFPSRMT 495 Query: 1002 LT 1003 + Sbjct: 496 IG 497 >UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB2_LEPTE Length = 880 Score = 322 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 141/411 (34%), Positives = 215/411 (52%), Gaps = 44/411 (10%) Query: 927 TVIDVQVFT-RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 VI +++ + ++ + L + +++ D + I++ G + + ++V+ Sbjct: 496 VVIGGEIYRPGNKLQINLEYLNFKYGFVQKNNYDHLDNDGIIKLGTWVKPGDIIVSKLRP 555 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 + P ++ + L + + D ++ + D+ Sbjct: 556 IGPHNPTPLEKLVAAILKKKFDDYKNAAFYTPKDVYGRIVGIEILEPKNLP---SDVEYS 612 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 + V+ YL KRRI GDKMAGRHGNKG+IS I P +DMPY +GTPVD+VLNPLGVPS Sbjct: 613 GIGRVEFYLVDKRRIFVGDKMAGRHGNKGIISNILPKQDMPYLPDGTPVDMVLNPLGVPS 672 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RMN+GQ+ ET LG+A K + + G + + + S Sbjct: 673 RMNVGQVFETLLGLAGKYLHQHFKVTPFDE--------------VYGPEASRSLVYSKLY 718 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 + + + + D + G+ R++DG+TG F++ V Sbjct: 719 EARLKT-------------------------DQNWIFDPKSPGKTRIFDGQTGANFDQAV 753 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 T GY YMLKL HLVD K+HARSTG Y+LVTQQP+ G+++ GGQR GEME WALEA+GA+Y Sbjct: 754 TAGYAYMLKLIHLVDHKIHARSTGPYALVTQQPVRGRSRAGGQRLGEMEFWALEAFGASY 813 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 LQEM+T+KSDD+ GRT+++ +I++ PESF V + E+RSLG+N Sbjct: 814 NLQEMMTIKSDDILGRTQVFDSILNSKPIQNSH-PESFRVFINELRSLGVN 863 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 75/124 (60%) Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 I+ + A + Y L Y RSNQ TCI Q P V LGE V++GD L D Sbjct: 35 HKKNIIPLNVDKARDVYRAHENSYFLDHYIRSNQATCITQRPSVKLGEWVQKGDFLCDTT 94 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 ++ GELALG+N+ VA+MPW+GYNFED+ILV+E ++ D +T++H+++ +T GP Sbjct: 95 ASSAGELALGKNILVAYMPWHGYNFEDAILVNETLIIYDIYTSLHLEKFEIEIENTNWGP 154 Query: 848 EEIT 851 E I Sbjct: 155 EIIK 158 Score = 99 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 4/207 (1%) Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 ++ E + V + LD GI+ +G V GDI+V K+ P G TP EK Sbjct: 507 NKLQINLEYLNFKYGFVQKNNYDHLDNDGIIKLGTWVKPGDIIVSKLRPIGPHNPTPLEK 566 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM--QLKQAKK 958 L+ AI +K D K+++ P V G ++ +++ + D I + L ++ Sbjct: 567 LVAAILKKKFDDYKNAAFYTPKDVYGRIVGIEILEPKNLPSDVEYSGIGRVEFYLVDKRR 626 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 + G I +L + D P D L L + N + Sbjct: 627 IFVGDKMAGRHGNKGIISNILPKQDMPY-LPDGTPVDMVLN-PLGVPSRMNVGQVFETLL 684 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPG 1045 + + G + + Sbjct: 685 GLAGKYLHQHFKVTPFDEVYGPEASRS 711 >UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Isoetes sp. JL-2005 RepID=Q1L6W4_9TRAC Length = 623 Score = 322 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 131/784 (16%), Positives = 229/784 (29%), Gaps = 183/784 (23%) Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS 621 TP+G N GL+ S++V+A LETP + + D ++ + + G V N Sbjct: 1 STPDGENCGLVKSMAVFAIVT----LETPEQPILDALLGHMMPPEAVFPLGELVKVFLNG 56 Query: 622 NL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 D E + + R G + + + S L+ L D + Sbjct: 57 KWVGITDAENDLEQYVKRKRRGGGLDYQAIC----LRGKEINIFSDAGRLLRPLFIVDND 112 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN 737 + + D G E + GV+++V A Sbjct: 113 ELCITKEHLFELRRKKPQD------GFEY-----------LVKEGVIEFVGAEEEYR--- 152 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 I +L K RS+ + +LA G Sbjct: 153 ------ASIAGSIQDL-KRPRSHHVRY--------THMELRPASLLAIGAF--------- 188 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV 857 +P+ +N ++ R I R E + P V Sbjct: 189 ------VIPFVNHNQSSRVMQQSRKHCRQ---AIGFNCSNLRVRCDTTSHELLYPQRPLV 239 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 A++ + G +L + + A+ + + +DS Sbjct: 240 RTQAMTLI-------------------------GRPELHNGQNPIVAVLSDTGYNQEDSI 274 Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEI--EEMQLKQAKKDLSEELQILEAGLFSRI 975 + + + + F + E + + L++ + Sbjct: 275 ILNQSSLDRGMFRSMHFHTHKDALKPTLDQRFGEPSESDVGGYKKQSHYEKLDSDGLPHV 334 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 A L + V K G E K + ++ + Sbjct: 335 GAALSSSDVIIGK--------LFTAGADVREVD----------ASQKLKHTERGRVDQVV 376 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 I +D VKV L R Q GDK + HG KGV+ ED+P+ +G D Sbjct: 377 IAAKNDAETD----VKVRLRECRTPQVGDKFSSMHGQKGVVGMCFHQEDLPFTRDGIVPD 432 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 ++ + H + +G + + + V+ Sbjct: 433 LI---------------INPHAFPTRQTLGQLMECLAGKAAAVSA--------------- 462 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 F E L +G +Y G Sbjct: 463 ------------------------REQDATPFVERSLPRFSEELHKAGFQRTGMECMYSG 498 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 R G + + V +G + +L H+ +DKM R TGS +T+QP+ + + GG RFGEME Sbjct: 499 RVGTRMKVRVNIGVTFYQRLTHMAEDKMKYRRTGSVHPLTRQPIVDRKRHGGIRFGEMER 558 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTKM---------------YKNIVDGNHQMEPGMP 1320 + A+GA+ TLQE L + SD + G++ + +P Sbjct: 559 DCMIAHGASATLQERLFLLSDPYVMYICTKCRRTASVEQNKVPRCRFCKCGSNIVRVNVP 618 Query: 1321 ESFN 1324 + N Sbjct: 619 YACN 622 >UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54649 Length = 440 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 210/440 (47%), Positives = 286/440 (65%), Gaps = 27/440 (6%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 SQLHRSPGVFFD D+GKTH+SGKVLYNARIIPYRGSWLDFEFD KDNLF RIDR++K+ Sbjct: 1 CCSQLHRSPGVFFDHDEGKTHASGKVLYNARIIPYRGSWLDFEFDHKDNLFFRIDRKKKM 60 Query: 205 PATIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDNKLQM 239 +T IL+AL T+E+IL F+E F+ + N + Sbjct: 61 ISTTILQALPSKASEKYLEECHQNKVDPDIYKVSGMTSEEILTYFYETFTFKKQKNGWVV 120 Query: 240 ELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 L + + + F++ + ++ K +++ + +++++ V E + G + Sbjct: 121 NLDLNKFKYKNLPFNLVDPLSKEIVAHKDVKLSLKLLKEIKDKKVSKFFFTEEDLYGFYL 180 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 + D ++ G + A LS + +L++ + + N I +L D N Sbjct: 181 SNDIVNYDNGLVYAEAGTLLSKEFFERLNELSIDQFSVVNANQATGNLGIINSLVADKNN 240 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 R AL +I++++RPGEPPT EA+ LF+N+FFSEDRYDLS VGR+K N L ++ S Sbjct: 241 SREEALFDIFKILRPGEPPTLEASNYLFQNMFFSEDRYDLSEVGRVKLNSYLSLDKTNKS 300 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 ILSK D++ V KKL D++ DDIDHLGNRR+RSVGE+ ENQ+R+GLVR+ERA++E Sbjct: 301 RILSKSDVLAVAKKLFDMKTESAGKDDIDHLGNRRVRSVGELIENQYRIGLVRMERAIRE 360 Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 ++ D++++MPQD++N+KPI +KEF G+SQLSQFMDQ NPLSEITHKRRISALGPGG Sbjct: 361 KMGTVDIESIMPQDLVNSKPIQTVLKEFTGTSQLSQFMDQTNPLSEITHKRRISALGPGG 420 Query: 538 LTRERAGFEVRDVHPTHYGR 557 LTRERAGFEVRDVH THYGR Sbjct: 421 LTRERAGFEVRDVHTTHYGR 440 >UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota RepID=Q0UYS5_PHANO Length = 1616 Score = 321 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 102/530 (19%), Positives = 163/530 (30%), Gaps = 125/530 (23%) Query: 888 TPKGETQLTPEEKLLRAIFGEK--ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 TP + + K R G+ + N +GT V V + G + D Sbjct: 1136 TPGTAMRYRTDNKTYRLQTGQTPVVRPPLHNEYGFDNFPNGTNAVVAVISYTGYDMDDAM 1195 Query: 946 LEIEEMQLKQAKKDLSEELQI--LEAG--------LFSRIRAVLVAGGVEAEKLDKLPRD 995 + + + + +I LE G S++ V A + + L D Sbjct: 1196 ILNKSAHERGFGHGTIYKTKICDLEEGARRNRSGRTISKLFGFAPDSLVPASRKETLDED 1255 Query: 996 RWLELGLTDEEKQNQLEQLAEQYD-------------ELKHEFEKKLEAKRRKITQGDDL 1042 +G YD E +L G + Sbjct: 1256 GLPRIGTLLRNGDAIAAWHTVSYDAASDDYVNRDANTNYFKYKEDELAFVEEVRIIGSED 1315 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 + + + L V R GDK + RHG KGV S+ P DMP+ E+G D+++NP Sbjct: 1316 GTQPCQKLSIKLRVPRSPVIGDKFSSRHGQKGVCSQKWPSIDMPFSESGIQPDVIINPHA 1375 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 P + IG + ++ A GA D + Sbjct: 1376 FP---------------SRMTIGMFVESL----------------AGKAGALHGIAQDST 1404 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 F +E L G +Y G TG++ Sbjct: 1405 PFRFDEQ-------------------NTAVDFFGHQLMKAGYNYYGNEPMYSGITGQELA 1445 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + +G +Y +L H+V+DK R+TG + T QP+ G+ + GG R GEME AL A+G Sbjct: 1446 ADIYIGVVYYQRLRHMVNDKYQVRTTGPINSTTGQPIKGRKKGGGIRVGEMERDALIAHG 1505 Query: 1283 AAYTLQEMLTVKSDDVNGRTK----------------------------MYKNIVD---- 1310 A+ LQ+ L SD + Sbjct: 1506 TAFLLQDRLMNCSDYTKAPICRECGSFLSTAPTVSEYGRKKDRGAQLTIRCRRCAKPADG 1565 Query: 1311 ------------------GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G + +P L E+ S+G+ ++ + E Sbjct: 1566 ITNKADVWMDGQGMRFQGGENIGVVAVPGVLKYLDVELASMGVKLKFKVE 1615 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 90/789 (11%), Positives = 221/789 (28%), Gaps = 156/789 (19%) Query: 9 KRIRKDFGKRPQVLD-VPYL---LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG 64 KR F P+ P L + ++SF + + L+ V Sbjct: 21 KRRHDLFSNPPKDSTAYPTLAAAVDPHINSFNSIFAAGGQLEEALKDIGTKV-------- 72 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 ++ G P +E R L V++ Q+V++ Sbjct: 73 -----FLD---GNPYARPEEVGQRN-----RLSVRI-------------------QDVFL 100 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 V+ + +V + ++ + + + + L Sbjct: 101 ---------DKSVLPPSNKVAL----KNRNILPAECRERHATYRGKL-----------RA 136 Query: 185 DFEFDPKDNLFVR-IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 E+ + + + +P + L K E + + Sbjct: 137 RLEWKVNNGDWREEVCDLGAVPIMLRL-------------VKAKEESEELGGYFIVNGIE 183 Query: 244 ERLRG---ETASFDIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + +R +F + + +G T +R + D G V Sbjct: 184 KIIRMLQVNRRNFPMAIKRGAFTNRGPGYTQYGILLRSMRPDQTSQTNALHYLSDGNVNL 243 Query: 299 KDYIDE-----STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 + + ++ + ++ L + D + T +V Sbjct: 244 RFSWRKAEYLVPVMMVLKSLVETNDREIFEGLVGAAGSEGLAEKQFVTDRVELLLRTYKV 303 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 + + + + + + ++ F R L +G Sbjct: 304 YGLHSKAKTRAYLGQKFKVVLQIPEDTSDEEAGTEFL--RRIVLPHLGAY--------HI 353 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 ++ +++KL + G+ VD+ D + N+ I G++ + L + Sbjct: 354 TPAQDADKFRMLLFMIRKLYSLVEGECCVDNPDAVQNQEILLGGQLYGMIMKERLDDWLQ 413 Query: 474 AVK------------ERLSLGDLDTLMPQDMINAKP--ISAAVKEFFGSSQL-------- 511 +++ + + ++ I A++ F + L Sbjct: 414 SMRPVLQDWGRRTEWRPFTSQEFQKDFISKILRRSQTDIGRAMEYFLSTGNLISPTGLDL 473 Query: 512 ------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 ++ N I+H R + G E VR + P +G +CP+ TP+ Sbjct: 474 QQTAGFVVVAEKINFYRFISHFRMV---HRGAFFAELKTTTVRKLLPESWGFMCPVHTPD 530 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL-- 623 G GL+N S + + K+ + S+ V+ Q + + Sbjct: 531 GAPCGLLNHFSHKCKLATQNVDVSAIPKLVAQLGVSS---KSSASIEASVVVQLDGRVLG 587 Query: 624 ----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS------TQQVVSVGASLIPFLEH 673 + + L + +G ++ ++ Y+ S ++S A + +++ Sbjct: 588 FCSPKQAKVIADTLRYWKVEGSHNVPLEMEIGYVPNSNGGQYPGVYMMSQVARMYRPVKY 647 Query: 674 DDANRALMGANMQRQAVPTLRADKPLV---GTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 ++ ++ + D +V T +E + + + D + Sbjct: 648 LPLDKLDYVGPFEQPYMSIACTDAEIVSGDSTHVEYD-----PTNIFSIVANMTPFSDFN 702 Query: 731 RIVIKVNED 739 + + + Sbjct: 703 QSPRNMYQC 711 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 36/300 (12%), Positives = 75/300 (25%), Gaps = 39/300 (13%) Query: 724 VQYVDASRIVIKVN---------EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 V+Y D +I ++ +M G + R++ T Q + Sbjct: 1103 VEYSDNDKIQEVIDAAQKPFFTGNCQMGKQSMGTPGTAMRY--RTDNKTYRLQTGQTPVV 1160 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 P + G N VA + + GY+ +D++++++ + + Sbjct: 1161 RPPLHNEY-------GFDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIYK 1213 Query: 835 ELACVS----RDTKLGPEEI----TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 C R + G A V + LDE G+ IG + GD + Sbjct: 1214 TKICDLEEGARRNRSGRTISKLFGFAPDSLVPASRKETLDEDGLPRIGTLLRNGDAIAA- 1272 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR-- 944 + V +V++ + + + Sbjct: 1273 ---WHTVSYDAASDDYVNRDANTNY------FKYKEDELAFVEEVRIIGSEDGTQPCQKL 1323 Query: 945 -ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 K S Q + + + P + + Sbjct: 1324 SIKLRVPRSPVIGDKFSSRHGQKGVCSQKWPSIDMPFSESGIQPDVIINPHAFPSRMTIG 1383 >UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0ERH0_ENTDI Length = 1106 Score = 319 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 116/908 (12%), Positives = 255/908 (28%), Gaps = 110/908 (12%) Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS-WLDFEFDPKDNLFVRIDRRRKLPA 206 G+ + + + + + Y G L + ++P Sbjct: 51 MELSCTGISIEKPRYNGLPLFPYMCRSAALTYSGKIRLTITIKENETSKTIEVDGGEIPI 110 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV---YV 263 + +E I + IR++ ++ F I + V Sbjct: 111 MVGTSKCWIGSEYIT----PEERINIREDPHEIG----------GYFIINGIERYLRMIV 156 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 IR + I +D + ++L + Sbjct: 157 YAKANHPLAVIRPSWTNKGAHFTKYGIIIRCMR--EDITTLTNTLHFLDNGK-VTLRFIF 213 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLRVDP-TNDRLSALVEIYRMMRPGEPP----TR 378 K + + L I E + ++ N L E+ G P T Sbjct: 214 KKQEFFIPVVLLLRVYGGMSDREIFELITMNNYENSNLVNAAEMLVRRENGSPLNGLNTP 273 Query: 379 EAAESLFENLFFSED--RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 E S + F ++ + K S D +I +++KL + Sbjct: 274 EQVLSYIGSKFRLIMDSTEGVNDIELGKRVLEEFCLVHLSSYSEKSDLLIFMLQKLFALV 333 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE-----------RAVKERLSLGDLD 485 +G+ + + +D ++ + G + + + + + + VK+ + + Sbjct: 334 HGEIDEEGVDTPMSQGVLLPGHLYQTVIKEEIQNILSKARLFILKDLKDVKKGSKITERV 393 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRIS 531 L AK +K F + S ++ N +H Sbjct: 394 YLQRILSNVAKSFGTRIKSFISTGNFETSSTTDLQQTNGFSITAERLNHSRFTSHF---V 450 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN--EYGFLET 589 ++ G +R + P +G +CP+ TP+G GL+N +V + N ++ E Sbjct: 451 SVHRGAFYTTMKTTSIRKLVPEAWGFMCPVHTPDGAPCGLLNHFAVSCRINARKHPLPEQ 510 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD------EEGHFVEDLVTCRSKGESS 643 + + ++ Y+ N + E FV+ L R+ Sbjct: 511 KIIDLCTELGMVSTQFMKLPSI--YIPVLLNGKVIGKVSPHEINSFVQQLRYERAIYNPK 568 Query: 644 LFSRDQVDYMD------VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK 697 + + ++ Y D + ++ +I + H + ++ + D Sbjct: 569 IPNTLEIGYCDGYLQDGYHALYLNNLPGQMIRPVIHRATGNIVNIGPYEQVFLDIKCGDS 628 Query: 698 PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYT 757 E S + +++ + + ++ + + +M GI L+ Sbjct: 629 IEGMNNAEYE--EISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIP--ALSNKY 684 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 RS+ P S+ + A E G N VA + + GY+ ED+++ Sbjct: 685 RSDTKLLWLHYPQRSICQ-------CALMEPFGFNEYPTGANAIVAVISYTGYDMEDALI 737 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 + + ++ + E + I + GE LD+ G+ G Sbjct: 738 IKKSAIERGFGHGSQYKAYKVDFEKEGEKNEMFS-GITSSGEIFDEHLDDDGLPRPGEIF 796 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 I G+ + +V G G + V++ D Sbjct: 797 ENSPIYSHIDKITGKIKG-----------------------KVLMGERGYIESVRIVGGD 833 Query: 938 GVEKDKR---ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 ++ + K S Q L + + + + P Sbjct: 834 NIDSGLQKAVVRVRYNRTPVIGDKFSSRHGQKGTLSLHYQEKDMPFTESGMTPDIIINPH 893 Query: 995 DRWLELGL 1002 + + Sbjct: 894 AFPSRMTI 901 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 82/441 (18%), Positives = 148/441 (33%), Gaps = 70/441 (15%) Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 P G + V + D + E + + ++ + G + + + + Sbjct: 714 YPTGANAIVAVISYTGYDMEDALIIKKSAIERGFGHGSQYKAYKVDFEKEGEKNEMFSGI 773 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + G ++ + + ++++ + + G Sbjct: 774 TSSGEIFDEHLDDDGLPRPGEIFENSPIYSHIDKITGKI--KGKVLMGERGYIESVRIVG 831 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D L+ V + R GDK + RHG KG +S +DMP+ E+G DI++N Sbjct: 832 GDNIDSGLQKAVVRVRYNRTPVIGDKFSSRHGQKGTLSLHYQEKDMPFTESGMTPDIIIN 891 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P H + I + +M + GA + Sbjct: 892 P---------------HAFPSRMTIAMLVESMASKV----------------GALKGEYQ 920 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D + F +E + + L G LY G G Sbjct: 921 DATPFKFDE-------------------ENTAVDYFGKQLLKYGYNYYGSEPLYSGIYGN 961 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + + +G +Y +L H V DK RSTG S+VT QP+ G+ + GG RFGEME +L Sbjct: 962 ELQSDIYIGVVYYQRLVHQVKDKYQVRSTGPISIVTHQPIKGRKRGGGIRFGEMERDSLV 1021 Query: 1280 AYGAAYTLQEMLTVKSD----DVNGRTKMYKNIVDGNH--------------QMEPGMPE 1321 A+G + + + L SD V + I + +P Sbjct: 1022 AHGTSMLVHDRLFECSDKCYHYVCTKCGSICTIKRSKEYDKMICQSCGPTSIVKKIQIPY 1081 Query: 1322 SFNVLLKEIRSLGINIELEDE 1342 F L E+ ++ + + L+ + Sbjct: 1082 VFRYLAAELSAMNVRLNLKVD 1102 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 55/428 (12%), Positives = 132/428 (30%), Gaps = 69/428 (16%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD- 81 ++ L +SF F+E+ E L+ + + + EL + +P ++ Sbjct: 10 ELKELTRAHTESFNYFLEKGKEDI--LKYMKKYKIIKKDSTELMELSCTGISIEKPRYNG 67 Query: 82 ----VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG--- 134 C+ +TYS +R+ + + E EV GEIP+M Sbjct: 68 LPLFPYMCRSAALTYSGKIRLTITIKENETSKTI---------EVDGGEIPIMVGTSKCW 118 Query: 135 -----------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 F+ING ER + ++ + ++ Sbjct: 119 IGSEYITPEERINIREDPHEIGGYFIINGIERYLRMIVYAKANHPLA-VIRPSWTNKGAH 177 Query: 172 YNARIIPYRGSWLDF-------EFDPKDNLFVRIDRRR---KLPATIILRAL-NYTTEQI 220 + I R D F + +R ++ +P ++LR + +I Sbjct: 178 FTKYGIIIRCMREDITTLTNTLHFLDNGKVTLRFIFKKQEFFIPVVLLLRVYGGMSDREI 237 Query: 221 LDLFFEKVIFEIRDNKLQMELVPERLRGETAS--FDIEANGKVYVEKGRRITARHIRQLE 278 +L +N + +R E S + +V G + Sbjct: 238 FELI----TMNNYENSNLVNAAEMLVRRENGSPLNGLNTPEQVLSYIGSKFRLIMDSTEG 293 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG--HKRIETL 336 +D++L + +E ++ +L+ +L + ++ + G + + Sbjct: 294 VNDIELGKRVLEEFCLVHLSSY---SEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGV 350 Query: 337 FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYD 396 + I E ++ + A + I + ++ + ++ + + + + Sbjct: 351 LLPGHLYQTVIKEEIQNILS----KARLFILKDLKDVKKGSKITERVYLQRILSNVAKSF 406 Query: 397 LSAVGRMK 404 + + Sbjct: 407 GTRIKSFI 414 >UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus RepID=A4RSZ5_OSTLU Length = 1145 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 126/912 (13%), Positives = 251/912 (27%), Gaps = 126/912 (13%) Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATII 209 HR G + G Y A + +D E N+ R+ P + Sbjct: 92 HRISGRTESQKTPRGCREGGESYKAPLSVQFCWQIDGE-----NVQRRVVNLGDCPVMVK 146 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 + L + + +R I+ + RR Sbjct: 147 SDVCSLALLSPAQLVARGEEAHEAGGYFIINGIERMIRM-----IIQQRRHHILGLCRRA 201 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 + + + V + + V + + E + L Sbjct: 202 FTKRSPLFSEFATVIRCVTEDEHSSIVRLHYMRTGALRLALQHRRQEFFIPAGIVLRALA 261 Query: 330 HKRIETLF--------------TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 ++ T D + ++ AL + + R Sbjct: 262 VCSDAEMYRQVCLHLRSAGTDETFIEDRLALLQRECHELQIRTQMCALSYLGQHFRTLLD 321 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 + + ++ F + Y +I ++ KL+ I Sbjct: 322 LSSDESDISVGERFLEDFIY-----------------VHLQHNGDKLSLLILMLSKLLSI 364 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD--TLMPQDMI 493 G+ DD D L N+ + G + + R + + V L +I Sbjct: 365 VTGRCSPDDPDSLVNQEVLVPGLLLQAMIREKVRIAFQKVVTHLRRTQGSWSEETISHLI 424 Query: 494 N---AKPISAAVKEFFGSSQL--------SQ------FMDQNNPLSEITHKRRISALGPG 536 N + + V+ F + L SQ ++ N I+H R ++ G Sbjct: 425 NESGSSDVGKVVEYFLATGNLVSPTGLGLSQTSGFTIVAEKLNYFRYISHFR---SVHRG 481 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 E VR + P +G +CP+ TP+G GL+N L+ + +T + Sbjct: 482 AYFMELRTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAEMCEIV---MPDTDHVFQQK 538 Query: 597 GVVTDEIHYLSA-IEEGNYVIAQANSNLDEEGHFVEDL--------VTCRSKGESSLFSR 647 ++ A I Y A+ + EG FV + ++ + +L + Sbjct: 539 RLLQIHSVLDRALISVEQYDCGYAHVPVVLEGSFVGYISAENASHVISALRAFKVTLTTS 598 Query: 648 D--QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP--TLRADKPLVGTG 703 + + + L F R + + +A + Sbjct: 599 VLRMSEISYIHPGGEHGLFPGLYIFYGPSRLMRPVKQVESMKVEFIGTLEQAFLSISAHQ 658 Query: 704 MERAVAVDSGVTA-----VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 +E A + ++ + + D ++ + + +M G ++ + R Sbjct: 659 VESHNASYTHAEIRNTSALSCVASLTPWSDFNQSPRNMYQCQMAKQTMGTPMHTICY--R 716 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 S+ P L D + ALG N VA + + GY+ ED+++V Sbjct: 717 SDTKLYRLHTPQRPLALTCTYDKYSLD-------DYALGTNAVVAVIAYTGYDMEDAMIV 769 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 ++ + + L E + N + +LD +G V +G+ V Sbjct: 770 NKGSLHRGFAHATLYKTLVEGISAN-----ETLSRRDNTYTSENKQLDGTGSVQLGSIVR 824 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD- 937 GD L+ L + K ++ G V+D V T+ Sbjct: 825 PGDTLL---------------NLHSSDGVTKGRSIR------LRGTDAAVVDKVVLTQSV 863 Query: 938 -----GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-GVEAEKLDK 991 +K + K S Q + + + Sbjct: 864 KQAATKNDKRAAITLRYDRNPVIGDKFSSRHGQKGVLSFLWPEEDMPFSDRTGLRPDVII 923 Query: 992 LPRDRWLELGLT 1003 P + + Sbjct: 924 NPHAFPSRMTIG 935 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 99/491 (20%), Positives = 164/491 (33%), Gaps = 89/491 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV--PNGVSGTVIDVQVFTRDGVEKDKRA 945 TP + KL R ++ + + + + GT V V G + + Sbjct: 708 TPMHTICYRSDTKLYRLHTPQRPLALTCTYDKYSLDDYALGTNAVVAVIAYTGYDMEDAM 767 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + + + L S + + +L ++LG Sbjct: 768 IVNK---GSLHRGFAHATLYKTLVEGISANETLSRRDNTYTSENKQLDGTGSVQLGSIVR 824 Query: 1006 EKQNQLEQLAEQYDELKHEF-----EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 L + + + K A K + L R Sbjct: 825 PGDTLLNLHSSDGVTKGRSIRLRGTDAAVVDKVVLTQSVKQAATKNDKRAAITLRYDRNP 884 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 GDK + RHG KGV+S + P EDMP+ + G D+++NP PSRM Sbjct: 885 VIGDKFSSRHGQKGVLSFLWPEEDMPFSDRTGLRPDVIINPHAFPSRMT----------- 933 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 IG + ++ A GA D + F + Sbjct: 934 ----IGMLVESL----------------AAKAGASTGIFADATPFKHSDK---------- 963 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 + + E +LL+ G RL +G TGE F + +G +Y +L H+V Sbjct: 964 --------EISPTEEYGKLLRESGYNFCGSERLVNGCTGESFSVDIFIGLVYYQRLRHMV 1015 Query: 1240 D--DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 H RSTG + +T QP+ G+ GG RFGEME +L A+G AY L +L + SD+ Sbjct: 1016 SLFHTFHVRSTGPNNPLTMQPIKGRKSGGGIRFGEMERDSLLAHGVAY-LVSLLHICSDN 1074 Query: 1298 ----VNGRTK----------------------MYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 V + + +P F L E+ Sbjct: 1075 RDAWVCNMCGSLIAPLTCVASIRTDEYSSRRTSCRVCDSAHKLERISIPHVFIYLTAELA 1134 Query: 1332 SLGINIELEDE 1342 ++ I+++++ + Sbjct: 1135 AMNISVQVKAK 1145 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 53/332 (15%), Positives = 100/332 (30%), Gaps = 67/332 (20%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS----GNSELQYVS 72 P + + L + +DSF G + R V P + L Sbjct: 29 SVPSEVPIKKLFACHVDSFNHL------TNLGFDQILRCVKPEKFQQSAGCPELMLWLED 82 Query: 73 YRLGEPVF------------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +L F + C+ G +Y APL V+ I ++++ + Sbjct: 83 LKLESLKFRHRISGRTESQKTPRGCREGGESYKAPLSVQFCWQI--------DGENVQRR 134 Query: 121 EVYMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRSPGVF 156 V +G+ P+M + F+ING ER+I + + Sbjct: 135 VVNLGDCPVMVKSDVCSLALLSPAQLVARGEEAHEAGGYFIINGIERMIRMIIQQRR-HH 193 Query: 157 FDSDKGKTHSSGKVLYNARIIPYRG-------SWLDFEFDPKDNLFVRIDRRR---KLPA 206 + + L++ R S + + L + + RR +PA Sbjct: 194 ILGLCRRAFTKRSPLFSEFATVIRCVTEDEHSSIVRLHYMRTGALRLALQHRRQEFFIPA 253 Query: 207 TIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 I+LRAL + ++ + D +E L+ E I Sbjct: 254 GIVLRALAVCSDAEMYRQVCLHLRSAGTDETF-IEDRLALLQRECHELQIRTQMCALSYL 312 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 G+ ++ D+ + E +E + Sbjct: 313 GQHFRTLLDLSSDESDISVGERFLEDFIYVHL 344 >UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7F6Y6_SCLS1 Length = 1165 Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 106/585 (18%), Positives = 179/585 (30%), Gaps = 124/585 (21%) Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 F +I + E + + + T I ++ D + + G Sbjct: 632 FMSIAVTEQEIEAGEHTHVEFDPT-HILSILANMTPFSDFNQSPRNMYQCQMGK--QSMG 688 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVK--DSSLRVPNGVSGT--VIDVQVFTRDGVEKDK 943 TP + + K R G+ + N +G V+ V +T ++ Sbjct: 689 TPGTAIRYRTDNKAYRLQTGQTPIVRAPLHNDYGFDNFPNGMNSVVAVISYTGYDMDDAM 748 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAG-------LFSRIRAVLVAGGVEAEKLDKLPRDR 996 + + + LE G ++ G V+AE + D Sbjct: 749 IINKSAHERGFGHGTIYKTKKYELEEGHKSRSARNIKKLFGFAPGGLVKAEWKAAIDEDG 808 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHE------------FEKKLEAKRRKITQGDDLAP 1044 +G + DE E ++ G++ Sbjct: 809 LPFIGRMVQNGDLIAAWHTVSMDENGKYVNRDGQTHFEKYKETEIAFIEEVRLIGNENGI 868 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 + + V L + R GDK + RHG KGV S+ P DMP+ E+G D ++NP P Sbjct: 869 EPCQAISVKLRIPRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFTESGIQPDTIINPHAFP 928 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 + IG + ++ A GA D + F Sbjct: 929 ---------------SRMTIGMFVESL----------------AGKAGALHGLAQDSTPF 957 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 +E + L G +Y G TGE+ Sbjct: 958 KFDEEHKAG-------------------DYFGHQLMKAGYNYYGNEPMYSGITGEELHAD 998 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + +G +Y +L H+V+DK R+TG + +T QP+ G+ + GG R GEME +L A+G A Sbjct: 999 IYIGVVYYQRLRHMVNDKYQVRTTGPVTQLTGQPIKGRKKGGGIRVGEMERDSLLAHGTA 1058 Query: 1285 YTLQEMLTVKSDDVNG-----------------------------RTKMY---------- 1305 + LQ+ L SD R + Sbjct: 1059 FLLQDRLLNCSDYTKSWICKECGTFLSTQPTVSAFASKKKGTGVVRCRKCATRAEGKFGG 1118 Query: 1306 ---------KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + V G +P L E+ ++GI ++ Sbjct: 1119 GEVWEDGKGQRWVGGEDTTVVAVPGVLKYLDVELAAMGIKLKYNV 1163 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 97/913 (10%), Positives = 232/913 (25%), Gaps = 152/913 (16%) Query: 158 DSDKGKTHSSGKVLYNARIIPYRG---SWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 + K R + YRG + +++ + D D + LP ++ + Sbjct: 107 NKFSTKNREILPAECRERHVTYRGKMSARMEYSINNGDPKEFIRDLGQ-LPLMLMSNKCH 165 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFDIEANGKVYVEKGRRITA 271 L K E + + + L +F + + +G T Sbjct: 166 LQNNSPAQLVQNKEESEELGGYFVVNGIEKIIRLLVVNRRNFPMAIIRPSFKGRGPAYTE 225 Query: 272 R--HIRQLEKDDVKLIEVPVEYIAG----KVVAKDYIDESTGELICAANMELSLDLLAKL 325 IR + D V G + + +I A +E + + + Sbjct: 226 FGMLIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPAMMILKALVETNDKEIFEG 285 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 T T D + T + + + R Sbjct: 286 LVGTPGSKGTDNTFLNDRVELLLRTYKAYGLYTKSKTRAYLGEKFRI------------- 332 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI-----LSKDDIIDVMKKLIDIRNGKG 440 + D VG + +L + ++ + +KL + G Sbjct: 333 --VLGVPDTMSNYDVGTEFLRKIVLVHLGNTNVTEAQDKDKFKMLLFMTRKLYSLVAGDC 390 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA-----VKERLSLGDLDTLMPQDMI-- 493 D+ D + N+ I G + + L +++ + + + + + Sbjct: 391 AGDNPDAVQNQEILLGGFLFGMIIKERLEDWLHTSLRMALRDYVRRSPENNFVTPEFLKD 450 Query: 494 --------NAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRIS 531 + + A++ F + L + ++ N L I H R I Sbjct: 451 FPVKICSRTNEQVGGALEYFMSTGNLVSPTGLDLQQTSGFTVVAEKINFLRFIAHFRMI- 509 Query: 532 ALGPGGLTRERAGFEVRDVHP---THYGRVCP--IETPEGPNIGLINSLSVYAQTNEYGF 586 G + V P + G V T E + L + + + Sbjct: 510 --HRGSFFAQLKTTTV--PLPKLLSELGVVSTGSSSTDESVVVQLDGKIMGWCSPKQSLV 565 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 + L + +G + + Sbjct: 566 ------------------------------------------IADTLRYWKVEGTHGVPT 583 Query: 647 RDQVDYMDVS------TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 ++ Y+ S + + A ++ +++ ++ +++ + ++ + Sbjct: 584 NLEIGYIPNSHGGQYPGIYLSAAPARMVRPVKYLALDKEDFVGPLEQPFMSIAVTEQEIE 643 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 G V D ++ + + D ++ + + +M G + R++ Sbjct: 644 A-GEHTHVEFD-PTHILSILANMTPFSDFNQSPRNMYQCQMGKQSMGTPGTAIRY--RTD 699 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 Q + D G N VA + + GY+ +D++++++ Sbjct: 700 NKAYRLQTGQTPIVRAPLHNDY-------GFDNFPNGMNSVVAVISYTGYDMDDAMIINK 752 Query: 821 RVVQEDRFTTIHIQE--LACVSRDTKLGPEEITA-----DIPNVGEAALSKLDESGIVYI 873 + + I V + +DE G+ +I Sbjct: 753 SAHERGFGHGTIYKTKKYELEEGHKSRSARNIKKLFGFAPGGLVKAEWKAAIDEDGLPFI 812 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 G V GD++ T + + + F + + +V++ Sbjct: 813 GRMVQNGDLIAAWHTVSMDENGKYVNRDGQTHF-----------EKYKETEIAFIEEVRL 861 Query: 934 FTRDGVEKDKR---ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 + + + K S Q + Sbjct: 862 IGNENGIEPCQAISVKLRIPRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFTESGIQPDTI 921 Query: 991 KLPRDRWLELGLT 1003 P + + Sbjct: 922 INPHAFPSRMTIG 934 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 66/445 (14%), Positives = 124/445 (27%), Gaps = 71/445 (15%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIEQDPEGQYGLEAAFRS--- 55 + + +R + P L ++ ++SF E+D GL Sbjct: 16 THEFDTIRREKLFRDPPKDHSAYPALTAAVAPHIESFNALFEKDGLIAQGLLDIGSKTYL 75 Query: 56 -----VFPIQSYSGNSELQ--YVSYRLGEPV---------FDVQECQIRGVTYSAPLRVK 99 + P ++ +V + P EC+ R VTY + + Sbjct: 76 DGDDRLGPSGKNRLTVRIKEVFVEKSMLPPSNKFSTKNREILPAECRERHVTYRGKMSAR 135 Query: 100 LRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG------------------------T 135 + I + E +G++PLM + Sbjct: 136 MEYSINNGDPKEFIR--------DLGQLPLMLMSNKCHLQNNSPAQLVQNKEESEELGGY 187 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEF 188 FV+NG E++I + F + + Y + R D + Sbjct: 188 FVVNGIEKIIRLLVVNRRN-FPMAIIRPSFKGRGPAYTEFGMLIRSVRPDQTSQTNVLHY 246 Query: 189 DPKDNLFVRIDRRRK---LPATIILRALN-YTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 N+ R R+ +PA +IL+AL ++I + + DN + V Sbjct: 247 LNDGNVTFRFSWRKNEFLVPAMMILKALVETNDKEIFEGLVGTPGSKGTDNTFLNDRVEL 306 Query: 245 RLRGETAS--FDIEANGKVYVEKGRRITAR--HIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 LR A + EK R + + + L ++ + ++ V + Sbjct: 307 LLRTYKAYGLYTKSKTRAYLGEKFRIVLGVPDTMSNYDVGTEFLRKIVLVHLGNTNVTEA 366 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + L+ SL + I + D + L Sbjct: 367 QDKDKFKMLLFMTRKLYSLVAGDCAGDNPDAVQNQEILLGGFLFGMIIKERLEDWLHTSL 426 Query: 361 S-ALVEIYRMMRPGEPPTREAAESL 384 AL + R T E + Sbjct: 427 RMALRDYVRRSPENNFVTPEFLKDF 451 >UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CB0F Length = 1114 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 125/994 (12%), Positives = 289/994 (29%), Gaps = 145/994 (14%) Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM---GEI 127 + + +P + +Y PL ++ + + + + ++ + + I Sbjct: 10 ENLKFSKPSL-----KYLTHSYGVPLDIQNEFLQTLGKPHVDSFNLLIDKGLNLICKNLI 64 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW---- 183 P+ F + G++R V Q+ ++ G + ++ ++ Sbjct: 65 PI-----HFSV-GSDRYTV-QIENLRLLYPVMPDGSFALKTQKIFPCECRQRASTYSGNL 117 Query: 184 ---LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 + + + + + D K+P I + +L + + ++ Sbjct: 118 FGKITWSVNGVNQHPIEKDFG-KIPIMIKSNRCHLKNLTPRELVEKNEHEDEWGGYFILK 176 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + +R I + RR + + + L V + + V Sbjct: 177 GHEKLIRM-----LIATRRNYPIALSRRTWKQRGASFSEKGILLRCVSEDETSTNNV-LH 230 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL----DHGPYISETLRV--- 353 ++ + T +++ + L L + +S + L D Y ++ Sbjct: 231 FVTDGTVKVMLSYGRSLYFIPLCLILKSLINVSDLYVFKRLTEGRDDDFYFKSCIKTMLY 290 Query: 354 ----DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 + A I + R P F DL + Sbjct: 291 DVHVQGIDTHEEAKCFIGKTFRLKFPDQS--------PWFTDAQICDLIMEKCLAI---- 338 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 + +I + +KL G+ ++ D L + I + G + + + L Sbjct: 339 ----HLNDNKDKFNLLIFMTQKLFAFVQGQCCEENADSLMVQEILTGGSIYQQVLKDRLQ 394 Query: 470 RVERAVK----ERLSLGDLDTLMPQDMIN----AKPISAAVKEFFGSSQ----------- 510 ++ ++LS G L+++ M + A I A+ F + Sbjct: 395 GFLNNLRLVASKKLSEGKLNSISQIQMASFCKRAGGIEKAMNNFVATGNCHNSLSGLPQD 454 Query: 511 --LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 L + N + ++H A+ G + R + P +G +CP+ TP+G Sbjct: 455 KGLVIMAENINRMRYMSHF---KAIHRGAYFTTMRTTDGRQLLPEAWGFICPVHTPDGSP 511 Query: 569 IGLINSLSVYAQTNEYGFLET--PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD-- 624 GL+N LS E V + + ++ NY + L Sbjct: 512 CGLLNHLSKDCIVTNVPDYEILKNLSCVLTDLGVMPLE--IVEKKNNYYDVLLDGKLIGY 569 Query: 625 ----EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA- 679 + V+ L + +G + ++ + V + S + F + R Sbjct: 570 VADTNAQNLVQSLRVLKIEGN---VVPNTLEIVLVPKKDSESQYPGIFLFTGPNRLMRPV 626 Query: 680 ---------LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 L+G Q L+ ++ G + + S T ++ ++ D + Sbjct: 627 LNLALNKTELIGTFEQVYLEICLKLNEAYEGLTTHKEL---SHTTFLSNLACLIPMPDCN 683 Query: 731 RIVIKVNEDEMYPGEAGIDIYNL-TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 + + + +M G ++ + + P G + Sbjct: 684 QSPRNMYQCQMGKQSMGTPVHTWDIQAETKLYRLLLPSSPLFRPGHY----------DAI 733 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 L + +G N VA + + GY+ ED++++++ + ++ + + Sbjct: 734 KLDDFPMGVNAVVAVISYTGYDMEDAMIINKSSFERGFGHGTILKS------EFFHLNPD 787 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 + +SKLD+ G+ + G V D + GE EK Sbjct: 788 SYFERDPSKAELISKLDDDGLPFPGTLVEENDPICCYFN--GELSKYVVEKFHGK----- 840 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE-IEEMQLKQAKKDLSEELQILE 968 V +V++ + + + K S Q Sbjct: 841 --------------EIAYVDNVRLCCGETLNSASVCITFRVPRNPVVGDKFASRAGQKGI 886 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + + P + + Sbjct: 887 CSQMWPCEDLPFTDSGLVPDVVFNPHGFPSRMTI 920 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 104/473 (21%), Positives = 170/473 (35%), Gaps = 80/473 (16%) Query: 888 TPKGETQLTPEEKLLRAIFGEKA---SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 TP + E KL R + D+ +++ + G V V + G + + Sbjct: 701 TPVHTWDIQAETKLYRLLLPSSPLFRPGHYDA-IKLDDFPMGVNAVVAVISYTGYDMEDA 759 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA-EKLDKLPRDRWLELGLT 1003 + + + IL++ F E + KL D G Sbjct: 760 MIINKSSFERGF-----GHGTILKSEFFHLNPDSYFERDPSKAELISKLDDDGLPFPGTL 814 Query: 1004 DEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 EE +L++ E H E ++ G+ L V + V R Sbjct: 815 VEENDPICCYFNGELSKYVVEKFHGKEIAY-VDNVRLCCGETLNSAS---VCITFRVPRN 870 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 GDK A R G KG+ S++ P ED+P+ ++G D+V NP G PS Sbjct: 871 PVVGDKFASRAGQKGICSQMWPCEDLPFTDSGLVPDVVFNPHGFPS-------------- 916 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 I I M + V + D + F E Sbjct: 917 -RMTIAMMIELMAGKSASV----------------HGKVHDATPFIFSE----------- 948 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 D + +LL+ G ++Y G G + + G +Y +L H+V Sbjct: 949 --------DNSAIDYFGKLLEAAGYNYYGTEKMYSGVDGREMNAAIFFGIVYYQRLRHMV 1000 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DK RSTG +TQQP+ G+ + GG RFGEME +L ++GA+ L + L SD Sbjct: 1001 LDKWQVRSTGPVDTLTQQPIKGRRRGGGVRFGEMERDSLISHGASALLHDRLFECSDKYK 1060 Query: 1300 GR------------TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 R ++ + DG + +P F LL ++ ++ I++++ Sbjct: 1061 ARSALFRCPKTGVKKEVCRLCSDGGNVKTIEIPYIFRYLLIQLAAVNIHLKVY 1113 Score = 89.9 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 56/417 (13%), Positives = 118/417 (28%), Gaps = 74/417 (17%) Query: 3 YSYTEKKRIRKDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 +S K + +G + + + L +DSF I++ GL +++ PI Sbjct: 14 FSKPSLKYLTHSYGVPLDIQNEFLQTLGKPHVDSFNLLIDK------GLNLICKNLIPIH 67 Query: 61 SYSG--NSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLRVKLRLVIYE 106 G +Q + RL P EC+ R TYS L K+ + Sbjct: 68 FSVGSDRYTVQIENLRLLYPVMPDGSFALKTQKIFPCECRQRASTYSGNLFGKITWSVNG 127 Query: 107 REAPEGTVKDIKEQEVYMGEIPLMTDNG------------------------TFVINGTE 142 E G+IP+M + F++ G E Sbjct: 128 VNQHPI--------EKDFGKIPIMIKSNRCHLKNLTPRELVEKNEHEDEWGGYFILKGHE 179 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG---------SWLDFEFDPKDN 193 ++I + + + +T ++ + I R + L F D Sbjct: 180 KLIRMLIATRRN-YPIALSRRTWKQRGASFSEKGILLRCVSEDETSTNNVLHFVTDGTVK 238 Query: 194 LFVRIDRR-RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 + + R +P +IL++L ++ F+++ D+ + L Sbjct: 239 VMLSYGRSLYFIPLCLILKSLINVSDL---YVFKRLTEGRDDDFYFKSCIKTMLYDVHVQ 295 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + + + + +++++ + Sbjct: 296 GIDTHEEAKCFIGKTFRL-----KFPDQSPWFTDAQICDLIMEKCLAIHLNDNKDKFNLL 350 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 M L + + L G I + + D L+ L + Sbjct: 351 IFMTQKLFAFVQGQCCEENADSLMVQEILTGGS-IYQQVLKDRLQGFLNNLRLVASK 406 >UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926601 Length = 1371 Score = 314 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 91/393 (23%), Positives = 138/393 (35%), Gaps = 81/393 (20%) Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQ 1038 K L +D +G + E K + Sbjct: 1029 DEESSTFKSGLLGKDGLPPIGRFMQHGDPYYSYYHIINGEYKTVKYKHMEPAYIDDIKIL 1088 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G D L V + L ++R GDK A RHG KG++S P E+MP+ E+G DI+ Sbjct: 1089 GSDKGDRELLKVSIKLRIQRNPIIGDKFASRHGQKGILSVKWPAENMPFTESGMIPDIIF 1148 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP G PSR IG I +M + A Sbjct: 1149 NPHGFPSR---------------MTIGMMIESMAGKSA----------------ALHGIT 1177 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 D + F E A + E+L G R+Y G G Sbjct: 1178 HDSTPFIFSEKKPAAH-------------------YMGEILVKAGYNYYGNERMYSGING 1218 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 ++ + + +G +Y +L H+V DK RSTG +T QP+ G+ + GG RFGEME AL Sbjct: 1219 KEMDVDIFIGIVYYQRLRHMVADKYQVRSTGPVDNLTHQPVQGRKRQGGIRFGEMERDAL 1278 Query: 1279 EAYGAAYTLQEMLTVKSD----DVNGRTK-------------------------MYKNIV 1309 A+G+ + L + L SD V + + Sbjct: 1279 IAHGSGFLLHDRLFNCSDRCETHVCTKCGSIFTPIVRKPVTHHDSLIGFNDRKWFCRVCG 1338 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G+ + +P F L+ E+ ++ I + L+ + Sbjct: 1339 HGDDIQKMLVPYVFKYLIAELTAMNIRLVLDVK 1371 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 78/625 (12%), Positives = 176/625 (28%), Gaps = 75/625 (12%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + + L + E + + + L ++ V Sbjct: 132 VPVMVKSKNCSLANLTPAQLIEKHEEAEEWGGYFIVNGIEKIL-------------RMLV 178 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 + R +R+ K + E+ + + L + +L + Sbjct: 179 MQRRNYPLAMVRKSWKSRG---PLFTEFGVSIRSIQKDQSGNINVLHYLTDGSFTLSFIH 235 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLR--VDPTNDRLSALVEIYRMMRPGEPPTREAA 381 + Q L + YI + L + +V + R + ++ Sbjct: 236 QKEQFFVPLALILKALTANSDQYIYKQLLHGKEDDIFFKDVVVNMLRTLNDENLLSQNDV 295 Query: 382 ESLFENLFF----SEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 F + + + F +L + +I + +KL + N Sbjct: 296 LKYMGMRFRIKVNLPEWTSDEDIAKYMFQTCVLVH--LEKITDKFNLLIYMTQKLFALAN 353 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP 497 K + D+ N + G + M + Sbjct: 354 DKCAAESPDNPMNHEVLLGGHTYLLVLKQ---------------------MESFLATGNI 392 Query: 498 ISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGR 557 +S + ++ +S D+ N + ++H R + G E VR + P +G Sbjct: 393 LSKSGLGLMQATGMSVVADKLNFMRYLSHFR---CIHRGAFFTEMRTTTVRKLLPEAWGF 449 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA 617 +CP+ TP+G GL+N L+ + + + K+ + + +Y + Sbjct: 450 LCPVHTPDGAPCGLLNHLAAACKVENTKYPTSDLIKLLVKLGMQLCDMDLGLASDSYSVL 509 Query: 618 QANSNLDEEGHFVEDLVTCRSKGES----SLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 + + + V C+ ++ + + + S + F + Sbjct: 510 LDGCVVGRLRSHISEEV-CKKLRVFKALQKEMVPPTMEIIFIPRTKFASQYEGIFLFTDV 568 Query: 674 DDANRA----------LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 R +G+ Q + +D+ T + +++ + Sbjct: 569 ARMIRPVRNLLTNTVEYIGSFEQVYMDIAVYSDEIHAPTTTHMELN---DCAMLSELATL 625 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 Y D ++ + + +M G L RS+ Q P L + Sbjct: 626 TPYSDFNQSPRNMYQCQMGKQTMGTPCQALK--HRSDNKMYKIQTPQAPLVRNKTYSEYG 683 Query: 784 ADGPSTDLGELALGQNMRVAFMPWN 808 D LG N VA + + Sbjct: 684 VDN-------FPLGTNAVVAVISYT 701 Score = 106 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 49/334 (14%), Positives = 103/334 (30%), Gaps = 63/334 (18%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP----- 78 + + ++SF +E L F + +E+ + +G P Sbjct: 28 LQEFIQPHIESFNYILENGLNEAVKL--IIPQEFELPDG-RRAEISILDCSIGTPVVDDN 84 Query: 79 -------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 EC+ R TY A L V L+ I T + ++P+M Sbjct: 85 NFTSKTQRVYPAECRERHCTYKAKLTVTLQWKINGVLQGSVTKS--------IAQVPVMV 136 Query: 132 DNG------------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSS 167 + F++NG E+++ + + + + K+ S Sbjct: 137 KSKNCSLANLTPAQLIEKHEEAEEWGGYFIVNGIEKILRMLVMQRRN-YPLAMVRKSWKS 195 Query: 168 GKVLYNARIIPYRG---------SWLDFEFDPKDNL-FVRIDRRRKLPATIILRALNYTT 217 L+ + R + L + D L F+ + +P +IL+AL + Sbjct: 196 RGPLFTEFGVSIRSIQKDQSGNINVLHYLTDGSFTLSFIHQKEQFFVPLALILKALTANS 255 Query: 218 EQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL 277 + +++++ D+ ++V LR + N V G R + Sbjct: 256 D---QYIYKQLLHGKEDDIFFKDVVVNMLRTLNDENLLSQND-VLKYMGMRFRIKVNLPE 311 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 D + + + V + D+ + Sbjct: 312 WTSDEDIAKYMFQT-CVLVHLEKITDKFNLLIYM 344 Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 14/167 (8%), Positives = 36/167 (21%), Gaps = 24/167 (14%) Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 EI L + G+ IG + GD Sbjct: 1015 EEQWNAIQPEILRSDEESSTFKSGLLGKDGLPPIGRFMQHGDPYYSYYHII--------- 1065 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD---KRALEIEEMQLKQA 956 + + +++ + + D+++ D +++ + Sbjct: 1066 ------------NGEYKTVKYKHMEPAYIDDIKILGSDKGDRELLKVSIKLRIQRNPIIG 1113 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 K S Q + + + P + + Sbjct: 1114 DKFASRHGQKGILSVKWPAENMPFTESGMIPDIIFNPHGFPSRMTIG 1160 >UniRef50_A9BK45 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK45_9CRYP Length = 1100 Score = 312 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 108/955 (11%), Positives = 282/955 (29%), Gaps = 113/955 (11%) Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 L+ + E+ + ++ ++M + + + +F + ++ + Sbjct: 21 LIWQQIESFNYFLNTDIKKIIFMNQKKIFDSDDSFFLK-FSKLKIGLASEYLNFMEMPIS 79 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 + Y I L F+ + K + K+P + Sbjct: 80 PYQCRTTDSSYTGTIFFD----LSFKIEKKKFNVFNFNLG-KIPIMLQSNKCIL------ 128 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 F + + N E F ++ KV + + + R I + Sbjct: 129 --FSKNENEFLSLN--------ECPLDPGGYFILKGTEKVILIQEQVSANR-INIEQDQH 177 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 + V + + K + ++ + L L G ++ + Sbjct: 178 GSICAVVNSFSSNKKIRNVVFLKNQKLYFKHKLFVEEIPLFIFLKSLGFEKDREILDLIG 237 Query: 342 DHGPYISE----TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 I E ++ + A+ I + + + + + + + Sbjct: 238 KEYENILEWSLFETKLAGITSKKQAIFYIVQRFNFNLFEKKFSDNAFKSKSYSENEFFFK 297 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 + + + G+ + ++KK+ N D+ D+ GN+R+ G Sbjct: 298 EGLTKFILTHLTPKVFYGGNLEEKGIFLSLMVKKIFSNLNQPMITDNKDYYGNKRLGLAG 357 Query: 458 EMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM-----INAKPISAAVKEFFGSSQL- 511 + F + + + L Q + + I+ ++ F + Sbjct: 358 NLVSILFEDFFRKTLKEGYKYYKLNSTKLKKNQHLELISFLRQDIITNGLEYSFSTGNWI 417 Query: 512 -----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 +Q + + + +S I+ +I++ + R R +H + +G +CP Sbjct: 418 VKKLKIEKNGVTQTLSRLSFISSISIVTKITS----QNEKIRKIRGPRSLHSSQWGMICP 473 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE---EGNYVIA 617 +TPEG + GL+ L++ A + ++ + + + + E Sbjct: 474 TDTPEGESCGLVKDLTILAHISVKIK-TRFITQLCYDLGIENLIHPKKKNFFLEKKICKI 532 Query: 618 QAN----SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 N + +F+ + R G + + D + + + Sbjct: 533 FLNGRYLGIHNNPSYFMYSFRSMRRSGMINYYVSIFWDTFS-EEIVIFTDEGRICRPFLI 591 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD---------------------- 711 D + + ++ L K L TG+ + V+ Sbjct: 592 VDLGKVKIKNFEKKLLKKNLTFCKDLFLTGLLEFLDVNEQNNAFIAQSPQYINNKTTHLE 651 Query: 712 -SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 S + ++ ++D ++ + M G +L + R + + P Sbjct: 652 ISPEIVLGICASLIPFLDHNQSPRNTYQCAMGKQAIGS--ISLNQNQRCDTILSLLIYPQ 709 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 +P+ + ++ + L G N V + ++G++ ED+I+++ ++ F + Sbjct: 710 ----KPLVKTKMV---YFSGNNRLTSGINACVCILSYSGFDIEDAIILNRSSIERGFFRS 762 Query: 831 IHIQELACVSRDTK-LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 + ++ + +++ LG + +PN+ + K Sbjct: 763 VIARKHKILLKNSDFLGAKSFERPLPNLEKFEEKK---------------------IKKI 801 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE 949 + ++ +K + SL+ G + V + + + + + Sbjct: 802 ENYGEVVKFQKKKNQFLNFEKQIFSRLSLKEFKGE--MIEKVIISSNFLEIFFVKLILRQ 859 Query: 950 EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 Q + K S Q G + + + L P + + Sbjct: 860 IRQPEVGDKFSSRHGQKGVCGAICFQKDLPFSNDGIIPDLIMNPHGFPSRMTVGK 914 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 88/424 (20%), Positives = 158/424 (37%), Gaps = 66/424 (15%) Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 SG V + + G + + + ++ + + + + L A Sbjct: 727 TSGINACVCILSYSGFDIEDAIILN----RSSIERGFFRSVIARKHKILLKNSDFLGAKS 782 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 E + + + + + + ++ Q+ + + +L K K + + Sbjct: 783 FERPLPNLEKFEEKKIKKIENYGEVVKFQKKKNQFLNFEKQIFSRLSLKEFKGEMIEKVI 842 Query: 1044 PGVLK----IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 VK+ L R+ + GDK + RHG KGV I +D+P+ +G D+++N Sbjct: 843 ISSNFLEIFFVKLILRQIRQPEVGDKFSSRHGQKGVCGAICFQKDLPFSNDGIIPDLIMN 902 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P H + +G I M Sbjct: 903 P---------------HGFPSRMTVGKVIEIM---------------------------- 919 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 G I F +K A+IK+ LK+ + G+ + G TG Sbjct: 920 -----------GAKIGSIFGKFIDGTPFIESKIAKIKKKLKIAGYSSEGKEFFFSGITGV 968 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 V G ++ KL H+V DK+HAR G S +T+QP+ G+++ GG RFGEME L Sbjct: 969 PMLMDVFSGPVFYQKLKHMVKDKIHARGKGPCSNITRQPIEGRSRGGGLRFGEMERDCLI 1028 Query: 1280 AYGAAYTLQEMLTVKSDDVNG----RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 +YGA+ + E L + SD T + + + + +P + +L +E++S+ I Sbjct: 1029 SYGASEAIIERLLISSDLTQANFDLHTGFFTDKKKSLNIVSLKLPYACKLLFQELQSMNI 1088 Query: 1336 NIEL 1339 L Sbjct: 1089 LPRL 1092 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 60/465 (12%), Positives = 141/465 (30%), Gaps = 50/465 (10%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 +K+F +L L+ Q++SF F+ D + F + I + L++ Sbjct: 6 KKNFNLVSYILKSKGLIWQQIESFNYFLNTDIKKI-----IFMNQKKIFDSDDSFFLKFS 60 Query: 72 SYRLG---------EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 ++G E +C+ +Y+ + L I +++ Sbjct: 61 KLKIGLASEYLNFMEMPISPYQCRTTDSSYTGTIFFDLSFKIEKKKFNVFNFN------- 113 Query: 123 YMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRSPGVFFD 158 +G+IP+M + F++ GTE+VI+ Q S Sbjct: 114 -LGKIPIMLQSNKCILFSKNENEFLSLNECPLDPGGYFILKGTEKVILIQEQVSANRI-- 170 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE 218 + + + + F ++P I L++L + + Sbjct: 171 -NIEQDQHGSICAVVNSFSSNKKIRNVVFLKNQKLYFKHKLFVEEIPLFIFLKSLGFEKD 229 Query: 219 -QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL 277 +ILDL ++ + + + +L + + + ++ EK A + Sbjct: 230 REILDLIGKEYENILEWSLFETKLAGITSKKQAIFYIVQRFNFNLFEKKFSDNAFKSKSY 289 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 +++ E ++I + K + + E ++ + + Sbjct: 290 SENEFFFKEGLTKFILTHLTPKVFYGGNLEEKGIFLSLMVKKIFSNLNQPMITDNKDYYG 349 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 L + L D L + Y++ + F + + Sbjct: 350 NKRLGLAGNLVSILFEDFFRKTLKEGYKYYKLNSTKLKKNQHLELISFLRQDIITNGLEY 409 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 S + L E+ + LS+ I + + I + ++ Sbjct: 410 SFSTGNWIVKKLKIEKNGVTQTLSRLSFISSISIVTKITSQNEKI 454 >UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium RepID=B3L5F6_PLAKH Length = 1539 Score = 311 bits (797), Expect = 9e-83, Method: Composition-based stats. Identities = 110/592 (18%), Positives = 188/592 (31%), Gaps = 88/592 (14%) Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 + P++ +N + +++++ IQ L + T IT P V Sbjct: 975 SLTPFSDHNQSPRNIYQCQMLKQTMG----IQSLNMMYTFTNKIYRMITPQYPLVVTRDY 1030 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 + AI D++D+ + + Sbjct: 1031 ELYGVDNFPS-------------------------GTNAVVAILAYTGYDMEDALIINKS 1065 Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 + ++ ++ K + + + + Sbjct: 1066 SAERGIFRTHIYKTIIIDLKKNHGAGDFALGNNVRY---TNKNAGTNATSANSTSTAKNN 1122 Query: 983 -GVEAEKLDK-LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 + E + K L +D + E +EK E + Sbjct: 1123 LKFQYEHMGKFLNKDGLPRVQQKMVELNPLYS--YVNKASELTVYEKFKEHGEYYVDCVT 1180 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 + +I + L R GDK A RHG KGV+S++ P EDMP+ E+G D++ NP Sbjct: 1181 NYKSTKNQIGIIRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPFSESGIVPDVIFNP 1240 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE-----------FIQRAY 1149 G+PSRM IG ++E+ G AA G +I+A ++ K F+++ Sbjct: 1241 HGIPSRMTIGMLIESICGKAACMYGKRIDATPFRKYTKQKSFNNEWIDNCGVKGFLEQVK 1300 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDG-------AKEAEIKELLKLG 1202 + + +E + +P K +LL Sbjct: 1301 QGKNEDGKDSSSHAPGEEVGHSHKGKKKNDIPKGETPKGEKNNITYDEKIDYFAKLLLNK 1360 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 G LY G G + + G +Y +L H+ DK R TG +T QPL GK Sbjct: 1361 GYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPICNLTHQPLKGK 1420 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK--------------- 1303 + GG R GEME L ++G ++ + E + SD V + Sbjct: 1421 KKHGGIRLGEMERDGLISHGCSFIINERFLINSDGHECFVCPQCGLILSPIMQFTCSGEM 1480 Query: 1304 -------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + K+ +P LL E+ L I I L + Sbjct: 1481 VKGRSIGGRSKVAVCKSCGVSCKI--VYVPYVLRYLLNELICLNITIRLNIK 1530 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 99/763 (12%), Positives = 217/763 (28%), Gaps = 97/763 (12%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY---------SGNSELQYVSYRL 75 +L+ +D + F+ + I +Y + + + R+ Sbjct: 84 KFLIQSHIDDYNSFVNVYLKNMPENIPVVEFSPKINTYATQNFNSKSTDSIKFYVSDIRI 143 Query: 76 GEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 PV C++ TY + +K+ + +I V G Sbjct: 144 RNPVLKNDKGETRNDYPYLCKLSARTYEGEITLKINRKTND---------EIISTTVSAG 194 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLYNARIIPYRG 181 IP+M + ++ + ++ Q G F S K I+ Sbjct: 195 TIPVMVLSNLCNLSSLSKKMLPQKGEDESLLGGFFVISGHLKVIRYVIHPKYNTILLNDE 254 Query: 182 SWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 + + ++++V K + + ++ I+ Sbjct: 255 NKVHMNCLLNDNSVYVNFLSCPKFDFFTYGARYQNSLMVVPLHIILLLLSPIKKKSYLFN 314 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + ++ E A IE + K + + I VA Sbjct: 315 KMKMGIKNENAVKYIEQYIQSIFMKNGLNEKEVFEKYNLKYLGNSSYFRRGIFRYNVA-- 372 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 E G++I + + ++ ++ +TL + I++ + Sbjct: 373 -PGERKGKIILRYAILPHIQSYSEKFETICMMFKTLIFSKFKLMAKINKDSLENHAVTTC 431 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 S L+ + R F E +YD V + Sbjct: 432 SHLLSNLLKEQILTCLGRLVFRYSRNFYKFYEKKYDSFKVMVKQIYLRYKE--------- 482 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM-----------AENQF----R 465 VM +L + ++ D ++ S ++ ++ F Sbjct: 483 ------MVMDELDEKHLNMVPLEGDDSDISKAADSGNQLAMSNKSEAVKKLKSIFMDEKE 536 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQDMIN----------AKPISAAVKEFFGSSQLSQFM 515 VE ++E + +L + + I IS+ + S Sbjct: 537 KLFSSVESYIQELYNDNNLFVDISKSFITLTMPIIFFFKTGNISSENIGYQQRSGWVIGA 596 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 D+ N L IT+ R A+ G +E R + +G +CP+ TP+G GL+N L Sbjct: 597 DEINSLRFITNFR---AIHRGCFFQEVKVLSPRKLLGEAWGFICPVHTPDGSPCGLLNHL 653 Query: 576 SVYAQT-------NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD---- 624 S ++ + ++ +K+ V D+ + I E + +S Sbjct: 654 SQFSYVHNSASNESHKLNIKLYLKKIGVNVNLDDTSGIPTIYEDQTIPILVDSVPITYIS 713 Query: 625 --EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST-----QQVVSVGASLIPFLEHDDAN 677 + V L ++ +L + +++ + + LI L + Sbjct: 714 EQDFNRVVYKLKYAKNHNLYNLKAYFEINAYLNEPLLMDSIIINTFPGRLIRPLFNLKMK 773 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 + + V + + + R + +K+ Sbjct: 774 CIEYISPAYQPYVAIAINYEHIKKNNLARKMLRMKERLVRSKK 816 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 35/313 (11%), Positives = 83/313 (26%), Gaps = 58/313 (18%) Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK-YTRSNQNTCINQMPCVSLGE 775 ++ G + + D ++ + + +M GI N+ +T Q P V + Sbjct: 970 LSFLGSLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMMYTFTNKIYRMITPQYPLVVTRD 1029 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 G + G N VA + + GY+ ED++++++ + F T + Sbjct: 1030 YELYG----------VDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGIFRTHIYKT 1079 Query: 836 LACVSRDTK-------------------------LGPEEITADIPNVGEAALSKLDESGI 870 + + ++ E L++ G+ Sbjct: 1080 IIIDLKKNHGAGDFALGNNVRYTNKNAGTNATSANSTSTAKNNLKFQYEHMGKFLNKDGL 1139 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 + ++ + L V E + + K + + ++ K S + G+ Sbjct: 1140 PRVQQKMVELNPLYSYVNKASELTVYEKFKEHGEYYVDCVTNYK--STKNQIGI------ 1191 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 K S Q + + + Sbjct: 1192 --------------IRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPFSESGIVPDVI 1237 Query: 991 KLPRDRWLELGLT 1003 P + + Sbjct: 1238 FNPHGIPSRMTIG 1250 >UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium cardiacum RepID=B2X1Z2_OEDCA Length = 739 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 137/357 (38%), Positives = 193/357 (54%), Gaps = 43/357 (12%) Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD---DL 1042 + K E + + Q ++L ++ D+ + + + D +L Sbjct: 418 KKFYRKNNNQELTERTINKTNIKLQFQKLRQKKDKKFYSINNDEAEQNVLPRKKDFSLNL 477 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 + VYLA KR+IQ GDK+AGRHGNKG++SKI PI+DMPY +G+ VD+VLNPLG Sbjct: 478 FNSKPFTIHVYLAEKRKIQVGDKIAGRHGNKGIVSKILPIQDMPYLADGSFVDLVLNPLG 537 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 VPSRMN+GQI E LG+A +G+ + + +G + + S Sbjct: 538 VPSRMNVGQIYECLLGLAGYYLGEYYRILPFDE--------------KIGEEASRSFVFS 583 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 + + L D G+ L+DGRTGE+FE Sbjct: 584 KLYEAGMKTGNY-------------------------WLFDPKNPGKTYLFDGRTGEKFE 618 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + V +GY Y+LKL HLVDDK+H+RSTG YS VTQQPL G+++ GGQR GEMEVWALE YG Sbjct: 619 QQVMIGYAYILKLVHLVDDKIHSRSTGPYSAVTQQPLRGRSKQGGQRLGEMEVWALEGYG 678 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AA+TL E+LT+KSDD GR ++ +I+ PESF VL+ E+++L +I + Sbjct: 679 AAFTLLELLTIKSDDKIGRLTIWDSILRQKEIS-IKTPESFKVLVCELKALCFDIGI 734 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 135/243 (55%), Gaps = 2/243 (0%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y+L Y RSNQ+TC+ P ++ G V+ GD+LAD S+ GELA+GQN+ +A+MPW GY Sbjct: 11 YHLENYHRSNQDTCLVHRPTINEGNWVQPGDILADCSSSKNGELAIGQNILIAYMPWEGY 70 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED++L+S+R+V ++ +T+IHI+ +T+ G E+IT ++ ++ LS LD++GI Sbjct: 71 NYEDAMLISDRLVYDEIYTSIHIERYEISIEETQFGFEKITKELYDLPGENLSHLDKNGI 130 Query: 871 VYIGAEVTGGDILVGKVTPKGET-QLTPEEKLLRAIFGEKASDV-KDSSLRVPNGVSGTV 928 +G+ + GDILVGKVTP + + + EKLL I G K + KD+SLRVP G+ V Sbjct: 131 TVLGSWLKEGDILVGKVTPTDKKVKYSNYEKLLYDILGTKKQNKGKDTSLRVPKGLEAKV 190 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 I +++ + + I ++ ++ + + Sbjct: 191 ITIEILSDNLSFSLTNFNLISLPNPLIYIQNRFLRFLNIQNKKNINSTHFAFDNKFKNQF 250 Query: 989 LDK 991 L Sbjct: 251 LKI 253 >UniRef50_B9G6G0 DNA-directed RNA polymerase n=5 Tax=Oryza sativa RepID=B9G6G0_ORYSJ Length = 1150 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 106/592 (17%), Positives = 173/592 (29%), Gaps = 141/592 (23%) Query: 787 PSTDLGELALGQNMRVA-FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 P+T VA PW+ +N + ++ ++ + + L Sbjct: 645 PATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFHL 704 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 T P V A SK Sbjct: 705 Q----TPQTPIVRTATYSKYCMDEF----------------------------------- 725 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 P+G + V V +T +E + + E Sbjct: 726 ---------------PSGTNAIVA-VLSYTGYDMEDAMILNKSAVDRGMFRGHIFQTECI 769 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK-HE 1024 L A + + + + D +G + ++ + Sbjct: 770 DLSAKSRDNVTEFFCKSNLSRDTTAAIESDGLPRIGENIFPNEQYYSVCNNLTGTVRPIK 829 Query: 1025 FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 + A + L+ + L R GDK + RHG KGV S++ P D Sbjct: 830 LKGSEPAAIDYVAVNGTNFKDRLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDID 889 Query: 1085 MPYDEN-GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 MP+ N G D+++NP PS I + ++ Sbjct: 890 MPFSANTGMRPDLIINPHAFPS---------------RMTIAMLLESI------------ 922 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 A G+ + +D + F+ R + E+ +L Sbjct: 923 ----AAKAGSLKGKFIDATPFASSVKER----------------SNSIVDELGPMLASYG 962 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G LY G G + + + +G +Y +L H+V DK R+TG +T+QP+GG+ Sbjct: 963 FNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQPIGGRK 1022 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM--------------- 1304 GG RFGEME AL A+GA+Y L + L SD DV Sbjct: 1023 YGGGIRFGEMERDALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVIKSESQKKA 1082 Query: 1305 -----------------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + MP F L E+ ++ I +EL Sbjct: 1083 KRDMLGLPTVKPPKNFACQACKTSKGMETVAMPYVFRYLASELAAMNIKLEL 1134 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 111/954 (11%), Positives = 247/954 (25%), Gaps = 151/954 (15%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R + S F D K S + + +P + L I ++ Sbjct: 19 RELYRPHIDSFDYFIDEGLDKMLQSIRPV--EITVPKSPTTLRNILPELGTPKASILKKV 76 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER---LRGETASFDIEANG 259 ++ ++ + + L F + L + ++ + Sbjct: 77 QIHHILVSKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKRNYPMGLIR 136 Query: 260 KVYVEKGRRIT--ARHIRQLEKDDVK-----LIEVPVEYIAGKVVAKDYIDESTGELICA 312 +V +G T A IR ++ D + G + G ++ A Sbjct: 137 GSFVNRGAGYTDKAVIIRCVQDDQSSVTIKLYYLLNGSARLGFWLGGREFLLPVGIVLKA 196 Query: 313 ANMELSLDLLAKL-----SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 ++ L + + I + +R R L+ + Sbjct: 197 LIDTSDREIFTSLTCCYSDHYERGKGVVSTQLIGERAQIILDEVRDLSLFTRTECLLHLG 256 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 + F ++ ++ D V + + + +I Sbjct: 257 K---------------YFRSVMEGFEKDDFETVAEAVLKDYIFVH--LQNNHDKFNLLIF 299 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-----SLG 482 +++KL I + D D L + + G + + L R K + Sbjct: 300 MLQKLYAIVDQTASPDKADALQYQEVLLPGHLITVFLKDRLQDWLRKSKRLIVEEATKNK 359 Query: 483 DLDTLMPQDMI------------------------------------NAKPISAAVKEFF 506 D +D I + + A++ Sbjct: 360 SFDLNDFRDFILEGQVKGTSRVIETSSGKPCWLMRIGAQEVRKFLSKTSAYVGKAIQSMI 419 Query: 507 GSSQL-SQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 ++ SQ ++ N I+H R ++ G + VR + P Sbjct: 420 KVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISHFR---SVHRGSSFAKMRTTSVRKLLP 476 Query: 553 THYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET---PYRKVTDGVVTDEIHYLSAI 609 +G +CP+ TP+G GL+N ++ + + + E ++K+ ++ + A Sbjct: 477 ESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGATKDFQKIKMSLIARLVGAGMAQ 536 Query: 610 EEGNY--VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 ++ +G V + + + + +V Y+ L Sbjct: 537 LLPRIERTGPPEVLHVHVDGCIVGSIASAKIEEVIPEDL--EVGYV---PLSHGGAYPGL 591 Query: 668 IPFLEHDDANRA---LMGANMQRQAVPTLRADK--------PLVGTGMERAVAVDSG--- 713 F R L+G + + + + P G G + + Sbjct: 592 YLFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQAFMEIRCPDGGDGGRNKLFPATHEEI 651 Query: 714 --VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 ++ + + D ++ + + +M G L R++ Q P Sbjct: 652 HPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALK--FRTDVKAFHLQTPQT 709 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 + D E G N VA + + GY+ ED++++++ V F Sbjct: 710 PIVRTATYSKYCMD-------EFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDRGMFRGH 762 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 Q N+ + ++ G+ IG + Sbjct: 763 IFQTECIDLSAKSRDNVTEFFCKSNLSRDTTAAIESDGLPRIGENIFPN----------- 811 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV--FTRDGVEKDKRALEIE 949 + + G +++ + V V + Sbjct: 812 ----EQYYSVCNNLTGTVRP------IKLKGSEPAAIDYVAVNGTNFKDRLQKANIRLRR 861 Query: 950 EMQLKQAKKDLSEELQILEAGLFSRIRAVLVA-GGVEAEKLDKLPRDRWLELGL 1002 K S Q + + L P + + Sbjct: 862 VRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTI 915 >UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VXL3_NAEGR Length = 1069 Score = 309 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 96/499 (19%), Positives = 159/499 (31%), Gaps = 95/499 (19%) Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV--SGTVIDVQVFTRDGVEKDKRAL 946 + KL +K +P +G V V + G + + + Sbjct: 614 VFHSVDHRVDTKLFDMKLPQKPLTRTKHQTDLPFDEFNNGCNAVVAVISYTGYDMEDAMI 673 Query: 947 EIEEMQLK--QAKKDLSEELQILEAGL----FSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 + + E L G + +A++ + L D E+ Sbjct: 674 MNKTSYERGMMHGTVFKTEDIDLTEGTAFLTNRVFDKTEMDSDYQAKEFEDLDYDGLPEV 733 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK---VYLAVK 1057 GL +E + + K +++ + P K VK + + Sbjct: 734 GLPLDEGSIFANYYDPEKQKFMPMKWKDVDSATVHSVKVIATDPSDYKKVKHASITFRLN 793 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R GDK + RHG KGV+S + P EDMP+ + G DIV+NP Sbjct: 794 RNPIIGDKFSSRHGQKGVLSILWPQEDMPFTDGGIVPDIVINPHAF-------------- 839 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 + IG + +M + GA D + FS E Sbjct: 840 -PSRMTIGMLVESMSSKA----------------GALHGYFPDATPFSFSE--------- 873 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 + E LK G +Y G G + + +G +Y +L H Sbjct: 874 ----------ENTAVDHFGEQLKKAGYNYHGNEVMYSGALGTTLKADIYMGVVYYQRLRH 923 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 +V DK R G + +T QP+ G+ + GG R GEME AL AYGAA +++ +D Sbjct: 924 MVSDKYQCRVGGPTNAITHQPVKGRKKAGGVRMGEMERDALVAYGAAAVVKDRFFDCTDS 983 Query: 1298 VNGRTKMYKN----------------------------------IVDGNHQMEPGMPESF 1323 N H +P + Sbjct: 984 STAIVCTCCNQMNTIVKPDMGTGSGPIVSGSGIGANLDELLCCVCKTNQHLRTIYIPYTT 1043 Query: 1324 NVLLKEIRSLGINIELEDE 1342 L E+ ++G+N+++ + Sbjct: 1044 KYLHSELAAMGVNLKICVD 1062 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 103/887 (11%), Positives = 249/887 (28%), Gaps = 114/887 (12%) Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 G L K+ I+R + + ++ L K + + + Sbjct: 12 NYGGSLKATILLKNEETGAIERIPDIQLMEDFPVMINSSFCNLPKLSPKQKMLQGEEEHE 71 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRR-ITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 E + + R + + + + + ++V Sbjct: 72 SGGYFVVRGSEVVYRLLTQQRANFPFAITRPSWMGYKEDFTDKGILVRCRHPKTLITRLV 131 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 Y + + + ++++ L LF Sbjct: 132 NIHYRRDGVVFMRAGNPVPFYINIVLALKALRECSDRDLFLLLT----------AGTKNK 181 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 L +VE+ R P + +++ G + + + ++ S Sbjct: 182 VTLDRVVELLGDFRKTFPTVQTREDAII------ALGTIYDPHGLRRLEEPVDKNKLIKS 235 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK- 476 G D ++ ++KL +G+ +++D N + +VGE+ N + + + Sbjct: 236 GYEKFDFLVYCVQKLYKFVDGEIAEENLDDFDNHELLTVGEVLSNVIPLIIYNKIQLAHG 295 Query: 477 --ERLSLGDLDTLMPQDM--------------INAKPISAAVKEFFGSSQLSQF------ 514 +L + T+ P + I +K + F +S Sbjct: 296 TCAKLLMKSATTMQPDMLEQKYLALFRDKCKSILSKACPNDINRLFSVGDVSVSAPFRPE 355 Query: 515 ----------MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 564 +++ N L I+H R A G + +R + P+ +G +CP+ +P Sbjct: 356 LSQTRALFTKLERINFLRVISHFR---ATHRGIAFLDSNSTRMRRLTPSFWGFICPVHSP 412 Query: 565 EGPNIGLINSLSVYAQTNEYGFLETPYRKVTD-----GVVTDEIHYLSAIEEGNYVIAQA 619 +G GL+N LS + + R V + G++ ++ + Sbjct: 413 DGHLCGLVNHLSQTTEIVTHQAKPKELRSVVEMCLKLGMLPSSTEKCISVSIEDEAPVML 472 Query: 620 NS------NLDEEGHFVEDLVTCRSKGESSLFSRDQV---------DYMDVSTQQVVSVG 664 + + D+ + + L C+ G+ L ++ D + + + Sbjct: 473 DGAIIGKVSHDKLQNLADQLRYCKVSGKYGLPKFMEIACQPKYSAMDIPYLPQLNIFTDI 532 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 A + + + + + ++ + + + + ++ G + Sbjct: 533 ARAVRPVRYLPTGQDEWIGSAEQVFMNIAVTVEDIKPNTTHMEIDP---TNFMSFLGNLT 589 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 + + ++ + + +M +++ R + ++P L + D Sbjct: 590 PFCNFNQSPRCIYQCQMAKQSMAAVFHSVD--HRVDTKLFDMKLPQKPLTRTKHQTD--- 644 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 E G N VA + + GY+ ED++++++ + + + Sbjct: 645 ----LPFDEFNNGCNAVVAVISYTGYDMEDAMIMNKTSYERGMMHGTVFKTEDIDLTEGT 700 Query: 845 LGPEEITADIPNVGEAA----LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 D + LD G+ +G + G I P Sbjct: 701 AFLTNRVFDKTEMDSDYQAKEFEDLDYDGLPEVGLPLDEGSIFANYYDP----------- 749 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF----TRDGVEKDKRALEIEEMQLKQA 956 K ++ + S TV V+V + K Sbjct: 750 ----------EKQKFMPMKWKDVDSATVHSVKVIATDPSDYKKVKHASITFRLNRNPIIG 799 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 K S Q + + G + P + + Sbjct: 800 DKFSSRHGQKGVLSILWPQEDMPFTDGGIVPDIVINPHAFPSRMTIG 846 >UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 99B1 RepID=D2TET4_9VIRU Length = 1507 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 140/1044 (13%), Positives = 299/1044 (28%), Gaps = 191/1044 (18%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQYVSY 73 + ++ ++ Q++S+ FIE + + + + S + + + + Sbjct: 10 WSVIGDYINSVSPVAHQIESYDHFIENQLPY---IISEGSDISYMHSSGKVSHHVHFTNP 66 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 + P + K ++ + +T + Sbjct: 67 SVNRPAIQESD------------------------------GFYKPITPHIARLRGLTYS 96 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 T V+V +H + ++ II Sbjct: 97 ST--------VVVDVIHDRINHTVSPPTL----INRKVFRNVIIAQ-------------- 130 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +P + + + + + ++ +++ F Sbjct: 131 ----------IPVMVRSKLCYLADVSE-----NDLSADAKKHECKVD--------PGGYF 167 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK-------VVAKDYIDEST 306 I N K + + + T K K + + + D S Sbjct: 168 IISGNEKTLIPQTKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMNINDISN 227 Query: 307 GELICAANMELS-------LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV--DPTN 357 GE+ L L I N I + N Sbjct: 228 GEVPVITCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQN 287 Query: 358 DRLSALVEIYRMMRPGEPP--TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 A+++ + T+E+ E + + + + Sbjct: 288 YSRDAIMDWVGRNVTSDTTRATKESREKYID------------HIITSELAPHMGLVNNP 335 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG-----LVR 470 + I ++++L+ + G+ VDD D N+RI S G + R + Sbjct: 336 ETNKKKMIFIGHMIQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQG 395 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL----------------SQF 514 + +++++ T ++++ K I++ +K F + Q Sbjct: 396 LSTQLRKQVESPREATFNVGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQI 455 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 + + ++ + R+I+ + RE R +HP+ +G VC +TPEG GL+++ Sbjct: 456 LPRLTTMATLGASRKINT----PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSN 511 Query: 575 LSVYAQTNEYGFLE-------TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG 627 L++ + ++ T + T Y+ N I +D+ Sbjct: 512 LAMTTRIRIGAPMQPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIK 571 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 + + R G + + ++ V S +L+ L D + MQ Sbjct: 572 EIATQMRSLRRHGNLPFDCS--ISISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQN 629 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI-KVNEDEMYPG-- 744 AV ++ G+ + + + I + E++P Sbjct: 630 PAV-VPNKYTRMLREGIIEYIDSAEQTNMRVA-------IHHTDIEQDEYTHIEIHPALL 681 Query: 745 -EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG----------------- 786 + + +S + ++G D Sbjct: 682 TGICVSQIPFCDHNQSPRIAYQAAQCKQAIGLYTTNFAERLDTVGHVLATPQKPLVTTRL 741 Query: 787 -PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 + G VA M ++G+N +DS+L+++ + FT+ + + T Sbjct: 742 EELLGTSVVRSGAVPIVAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEEKGTGA 801 Query: 846 GPEEITADI-----PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 E + EA SK+D+ G+ IG GD+L+GKV Q P+E Sbjct: 802 DIERFENPKNIPGCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQADPKE- 860 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRALEIEEMQLKQAKKD 959 GE D K V V+D F++ + K Sbjct: 861 ------GEVRRDTKRDRSHVLRTDEPVVVDAVFFSKTPEGHGYVKVRTRAIRIPMVGDKF 914 Query: 960 -LSEELQILEAGLFSRIRAVLVAG 982 L+ + ++L + I V Sbjct: 915 CLTADHEVLTKDGWKYINNVTPDD 938 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 107/295 (36%), Gaps = 75/295 (25%) Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 + RHG KGV P D P +G DI++NP H + IG Sbjct: 1266 SSRHGQKGVCGVTMPAADFPCTADGVAPDIIINP---------------HAIPSRMTIGM 1310 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + +L + +G Sbjct: 1311 LMEMVLSKVA---------------------------------------CYEGETQDGTP 1331 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F G I + L+ + G LY+G +GE E + + Y +L H+V DK HAR Sbjct: 1332 FTGNNIELIADRLETHGMQRYGNEMLYNGMSGEILESMIFIAPCYYQRLKHMVVDKSHAR 1391 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV----NGRT 1302 + G+ L+T+ P G+++ GG R GEME ++ ++GA ++ L +SD + Sbjct: 1392 NRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKC 1451 Query: 1303 K-----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ G H +P S +L++E+ + I+ LE Sbjct: 1452 GHFAREGTDDTSVKNSGMWCEHCKTGEHCTHTQLPYSMKLLIQELAAAHISATLE 1506 >UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Tax=Sarcocystidae RepID=RPOB_TOXGO Length = 1051 Score = 305 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 166/820 (20%), Positives = 322/820 (39%), Gaps = 45/820 (5%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD--IEANGK 260 K+ L + Y I K + L+ L + + K Sbjct: 62 KVNNINFLDNVQYINSLIKIFLPLKFQNLKTNKVFFKNLLIFELPKYNSYNYCYLNGLKK 121 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 +++ K + K I + +D ++ + L + Sbjct: 122 IFISKYFTSNGIFFNKYLKRKYN-IYYAKLLLTNSNFFNIILDLKLKQIYLSIKN-LKFN 179 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 + L G K + L + + + + D ++ I + + Sbjct: 180 FILFLYYLGIKNTDILKYSRYKNSKILKLLIFSALQTDLVNNKKIILKNL---------N 230 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 L Y + + K N + L D I ++ L+D+++ K Sbjct: 231 YLKSIFKLTILNKNYKNFIISKDKLNYNYG---DFSKNNLLIIDFIFILDLLLDLQSKKL 287 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA 500 IDHL N+ I ++G ++ F+ L + + + L L + Sbjct: 288 CFKTIDHLDNKHINTIGNYFQHNFKFYLKKFISIIPNLIKLQKFSLLKVYN--------- 338 Query: 501 AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 KE + L Q+++Q N SE+ HK +++ + + +R++ G++C Sbjct: 339 -FKELLILNPLIQYLEQINSFSELMHKYKLNNYN----SFSKGILNLREICLNQLGKLCL 393 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN 620 I+T EG N GL+ S + + + + G ++ + + + +++ +++++ Y+I N Sbjct: 394 IDTTEGINCGLVVSFAKHIRIYKKGIIQVYFSSIFKNKTKEFLNFKTSLDQELYLIQFNN 453 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 NL + + + + +K + + + + S +LIPF++++D R L Sbjct: 454 INLRKIKYLMN-VRLVYNKNNFRIKFFSNKKSILLEFTDLFSFTENLIPFIKYNDPARCL 512 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 MGA MQ Q+VP L K V TG E+ + S T A + G+V + +I IK + Sbjct: 513 MGAKMQSQSVPLLNKKKSFVITGYEKEIITKSDTTIKALQEGIVLNASSLKIHIK----D 568 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 ++ E +Y L+KY +SNQNT I+Q P V GE V +L E A+G N+ Sbjct: 569 LFNREI---VYYLSKYKKSNQNTIIHQKPLVWNGERVFTNQLLTQHQDIIDSEFAIGNNL 625 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV-SRDTKLGPEEITADIPNVGE 859 + + GY+FED+++VS+RV+ + F+++H+ + + E T +IP Sbjct: 626 LFYYGNFCGYDFEDAVIVSKRVLYQQLFSSLHMDIYEFNFCYNNENDIEFSTLEIPKQSY 685 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTP-KGETQLTPEEKLLRAIFGEKASDVKDSSL 918 LD GI+ G ++ G IL+ K+ K KL+ +IFG+ ++KD+SL Sbjct: 686 YIKKNLDSLGIIKEGEKILTGSILLTKIKVAKPTYTYKSIFKLIYSIFGKTIRNIKDNSL 745 Query: 919 RVPNGVSGTVIDVQVF-----TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973 + G SG V +++F +R + + + + + + + G Sbjct: 746 YIQTGKSGRVSKIELFLVNISSRHKYKTYNNSYLKCRIFICKQRFLTVGDKLCGRYGNKG 805 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ 1013 + + + + P LG+ QL + Sbjct: 806 ILSYIAENADLPFLQNSFYPDIIVGALGIPSRMNLGQLFE 845 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 115/511 (22%), Positives = 196/511 (38%), Gaps = 57/511 (11%) Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 E + + + + +V+ G V L+ + +++ L Sbjct: 567 KDLFNREIVYYLSKYKKSNQNTIIHQKPLVWNGERVFTNQ-LLTQHQDIIDSEFAIGNNL 625 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK-----------RALEIEE 950 L D +D+ + V+ Q+F+ ++ + +E Sbjct: 626 LFYYGNFCGYDFEDAVIVSK-----RVLYQQLFSSLHMDIYEFNFCYNNENDIEFSTLEI 680 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-GVEAEKLDKLPRDRWLELGLTDEEKQN 1009 + K + L I++ G ++L+ V + + + Sbjct: 681 PKQSYYIKKNLDSLGIIKEGEKILTGSILLTKIKVAKPTYTYKSIFKLIYSIFGKTIRNI 740 Query: 1010 QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 + L Q + + +L ++++ +R + GDK+ GR Sbjct: 741 KDNSLYIQTGKSGRVSKIELFLVNISSRHKYKTYNNSYLKCRIFICKQRFLTVGDKLCGR 800 Query: 1070 HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN 1129 +GNKG++S I D+P+ +N DI++ LG+PSRMN+GQ+ E +G + +I Sbjct: 801 YGNKGILSYIAENADLPFLQNSFYPDIIVGALGIPSRMNLGQLFEALVGKISFSYNIRI- 859 Query: 1130 AMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDG 1189 Y+ K + Sbjct: 860 LPSFTTSSNLYFNYLKILIYNFLMFNNFKKGFN--------------------------- 892 Query: 1190 AKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTG 1249 L + G+ + DGRTG + + V G KL HL+ DK+H R+TG Sbjct: 893 ----------WLYNFNLPGKFIIRDGRTGVKLKSSVLCGVSRYSKLIHLIKDKLHFRTTG 942 Query: 1250 SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV 1309 Y+ + QQPL GK GGQRFGEME+WALEA+GA+Y L+E+L KSDD R + + ++ Sbjct: 943 PYTEILQQPLKGKKNLGGQRFGEMEIWALEAFGASYNLKEILNYKSDDCFARNNLKEYLL 1002 Query: 1310 -DGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + ESF V+LKE L +N+EL Sbjct: 1003 FRNTELQNSTITESFRVILKEFNGLILNLEL 1033 Score = 59.9 bits (143), Expect = 7e-07, Method: Composition-based stats. Identities = 54/433 (12%), Positives = 135/433 (31%), Gaps = 28/433 (6%) Query: 111 EGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 + + + + E+P +NG +++ +S+ S G+FF+ + ++ Sbjct: 89 NLKTNKVFFKNLLIFELPKYNSYNYCYLNGLKKIFISKYFTSNGIFFNKYLKRKYN---- 144 Query: 171 LYNARIIPYRGSWLDFEFDPK-DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVI 229 +Y A+++ ++ + D K +++ I + K + L L IL + + Sbjct: 145 IYYAKLLLTNSNFFNIILDLKLKQIYLSI-KNLKFNFILFLYYLGIKNTDILK--YSRYK 201 Query: 230 FEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 L + L N + K I ++ + KL Sbjct: 202 NSKILKLLIFSALQTDLVNNKKIILKNLNYLKSIFKLT-ILNKNYKNFIISKDKLNYNYG 260 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 ++ ++ D+I L + + L I F ++ Sbjct: 261 DFSKNNLLIIDFIFILDLLLDLQSKKLCFKTI-DHLDNKHINTIGNYFQHNFKFYLKKFI 319 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS----------A 399 ++ + + +L+++Y + +Y L+ Sbjct: 320 SIIPNLIKLQKFSLLKVYNFKELLILNPLIQYLEQINSFSELMHKYKLNNYNSFSKGILN 379 Query: 400 VGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV--DDIDHLGNRRIR--- 454 + + N+ I+ + ++ ++ K + + G +V I + Sbjct: 380 LREICLNQLGKLCLIDTTEGINCGLVVSFAKHIRIYKKGIIQVYFSSIFKNKTKEFLNFK 439 Query: 455 --SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFG-SSQL 511 E+ QF +R + + + + + + N K I + F + L Sbjct: 440 TSLDQELYLIQFNNINLRKIKYLMNVRLVYNKNNFRIKFFSNKKSILLEFTDLFSFTENL 499 Query: 512 SQFMDQNNPLSEI 524 F+ N+P + Sbjct: 500 IPFIKYNDPARCL 512 >UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NYQ6_COPC7 Length = 1127 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 88/442 (19%), Positives = 147/442 (33%), Gaps = 85/442 (19%) Query: 888 TPKGETQLTPEEKLLRAIFGEK--ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 TP Q + KL R G+ ++ + +GT V V + G + + Sbjct: 645 TPATAIQHRTDNKLYRLQTGQSPIVRPSLHNTYGMDAFPNGTNAVVAVISYTGYDMEDAM 704 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGL--------------FSRIRAVLVAGGVEAEKLDK 991 + + + + QI++ F + + G + Sbjct: 705 ILNKSAHERGFTYGTIYKSQIIDLKEVRGASKSSSTPTLHFGIAGDIRLTGDNAHPCAEF 764 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKI 1049 + +D G+ + + + + + + G D L+ Sbjct: 765 VDKDGLPFPGVRVKPGDPLAAYIDDTTGRTRFVKYKGDETAYVDQVRLLGSDAGDSELQK 824 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V V L + R GDK + RHG KGV S+ P DMP+ E+G D+++NP PSRM I Sbjct: 825 VHVTLRIPRAPVIGDKFSSRHGQKGVCSQKWPAIDMPFSESGIQPDVIINPHAFPSRMTI 884 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 G ++E+ G A G +A + E Sbjct: 885 GMLVESMAGKAGAMHGLAQDATPFKFTEED------------------------------ 914 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 + L G +Y G TG++F + G Sbjct: 915 --------------------TAIDYFGKQLLAAGYNYYGNEPMYSGITGQEFAADIYFGV 954 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 +Y +L H+V DK G+ + GG RFGEME AL A+G ++ LQ+ Sbjct: 955 VYYQRLRHMVLDKFQ----------------GRKRAGGIRFGEMERDALIAHGTSFLLQD 998 Query: 1290 MLTVKSDDVNG-RTKMYKNIVD 1310 L SD + +++ Sbjct: 999 RLMNCSDYSTAWVCRTCGSLIS 1020 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 91/806 (11%), Positives = 209/806 (25%), Gaps = 128/806 (15%) Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I N ++ I + +Y + T L Sbjct: 155 GYFVINGNERLIRYLILPRRNHVISLIRPSFSNRGPSYTQYAVQIRCVRPDQTSVTNTLH 214 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE-----TLRVDPTNDRLSALVE 365 AN + + + L I E DR+ L+ Sbjct: 215 YLANGSAMFRFTWRKQEYVIPIMLILKALVNASDKEIFEGVVMQDYDNTFLTDRVELLLR 274 Query: 366 IYRM--MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 ++M M GE + L ED + +A+G + +L + Sbjct: 275 SFKMYTMHTGEQCLEYLGDKFRVVLNLPEDWTN-AAIGAWLIQKLVLVH--LETPRDKFR 331 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG- 482 ++ +++K+ + +G+ D+ D ++ + G + + + + A++ +++ Sbjct: 332 MLLYMLRKMYSLISGECCADNPDSPQHQEVLLPGSLYGMIIKERMEEILNAIRATIAMDV 391 Query: 483 ---------DLDTLMPQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNN 519 D I + + F + L + ++ N Sbjct: 392 RTGANVDFHDKKYFAKVLTKVNFDIGSKMSNFLATGNLVSPTGLDLQQASGFTIVAEKLN 451 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 I+H R + G E VR + P + + N L+ + Sbjct: 452 WQRYISHFR---CIHRGAFFAELKTTTVRKLLPEAW------------VAHIPNLLAAHG 496 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 + + DG ++ VI A + +L +++ Sbjct: 497 -------MTQSFATSIDGRKNL------CVQLDGRVIGWARPVV--AAQLATNLRIWKTE 541 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT--LRADK 697 G+ + ++ ++ + L F R + + + Sbjct: 542 GKYEVPLDLEIGFV---PESHGGQYPGLFLFSTKARFMRPVKYLANGKDDQIGSFEQVYM 598 Query: 698 PLVGTGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN 752 + T E V + ++ + + D + +M G Sbjct: 599 NIACTPEEIEEGVSTHVEHDPTNFLSILANMTPFSDFN---------QMGKQTMGTPATA 649 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 + R++ Q + P D G N VA + + GY+ Sbjct: 650 IQ--HRTDNKLYRLQTGQSPIVRPSLHNTYGMDA-------FPNGTNAVVAVISYTGYDM 700 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG------------EA 860 ED++++++ + + ++ + + + + G Sbjct: 701 EDAMILNKSAHERGFTYGTIYKSQIIDLKEVRGASKSSSTPTLHFGIAGDIRLTGDNAHP 760 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 +D+ G+ + G V GD L + T G+ Sbjct: 761 CAEFVDKDGLPFPGVRVKPGDPLAAYI------DDTTGRTRFVKYKGD------------ 802 Query: 921 PNGVSGTVIDVQVFTRDGVEKD---KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 + V V++ D + + K S Q Sbjct: 803 ---ETAYVDQVRLLGSDAGDSELQKVHVTLRIPRAPVIGDKFSSRHGQKGVCSQKWPAID 859 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + + P + + Sbjct: 860 MPFSESGIQPDVIINPHAFPSRMTIG 885 Score = 73.0 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 90/285 (31%), Gaps = 52/285 (18%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPY-LLSIQLDSFQK-FIEQDPEGQYG-----LEAAFR 54 + ++ K+ K + ++ ++SF F + G L A + Sbjct: 13 TFDTLSRENAFKNPPKNGSTYKILNEFVAPHIESFNALFDDSGLPSGDGDGRGLLSLALK 72 Query: 55 SVFPIQSYSGN---------------SELQYVSYRLGEPVFDVQE--CQIRGVTYSAPLR 97 + ++ G + + P+ ++ + R V S +R Sbjct: 73 DIGERVAFDGRGADPESWGNRMRTNWLAVWIEQVTIARPMVSDRDRTARERRVFPSESVR 132 Query: 98 VKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF 157 LR + V+ +E E + G FVING ER+I + Sbjct: 133 CNLR-----TLSSAELVQRHEEPEEFGG---------YFVINGNERLIRYLILPRRNHVI 178 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRRK---LPAT 207 + + S+ Y + R D + + R R++ +P Sbjct: 179 SLIR-PSFSNRGPSYTQYAVQIRCVRPDQTSVTNTLHYLANGSAMFRFTWRKQEYVIPIM 237 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 +IL+AL ++ FE V+ + DN + V LR Sbjct: 238 LILKALVNASD---KEIFEGVVMQDYDNTFLTDRVELLLRSFKMY 279 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G +P F L E+ S+GI + LE + Sbjct: 1095 KGGDLDVVAVPYVFRYLCAELASMGIAVSLEVK 1127 >UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTL9_ENTBH Length = 1066 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 98/477 (20%), Positives = 159/477 (33%), Gaps = 67/477 (14%) Query: 883 LVGKVTPKGETQLTPEE----KLLRAIFGEKASDVK---DSSLRVPNGVSGTVIDVQVFT 935 ++ P + +P ++ + G A ++K D+ L N + +I + Sbjct: 638 IIANTIPFADHNPSPRNIYQCQMAKQAMGIAAYNIKYRVDNKLYNINYLQHPLIQTSNYQ 697 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + + + + L + + + EK DK+ Sbjct: 698 CFEKFPLGFNCIVAVLSYTGYDMEDAIILNKASVNRGMFNGFITMNEKIILEKNDKILYT 757 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 +E L + + E K R L V Sbjct: 758 PPIESKLKTNDIMLTYKSDGIIKTVRYENIEMGSVEKIRVFQNS--LTEKSNLTVIFTFR 815 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 + R GDK RHG KG+ + + DMP+ ENG DI++NP PSRM IG ++E+ Sbjct: 816 ILRNPVVGDKFCSRHGQKGICAFLWNEIDMPFTENGLKPDIIINPHAFPSRMTIGMLIES 875 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 G AA G +N + + Sbjct: 876 MCGKAAVKFGKFVNGDPFIDNKNNDI---------------------------------- 901 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + + LK G +Y G G + + + +G +Y +L Sbjct: 902 -------------NVNKFNVNRKLKECGFNYYGNEPMYSGVFGTELKTDIFIGLVYYQRL 948 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DK R G+ + TQQP+ G+ GG RFGEME L A+G++ +++ L S Sbjct: 949 KHMVSDKFQVRVGGAITSTTQQPVKGRKNKGGIRFGEMEKDTLIAHGSSALIKDRLLDCS 1008 Query: 1296 DDVN-GRTKMYKNI----------VDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 D KNI G MP F LL E+ + I +E + Sbjct: 1009 DKTTFKYCYKCKNILFSSPNDKCKCGGIKSKNIKMPYVFKYLLAELMGMNIKLEFDI 1065 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 111/933 (11%), Positives = 238/933 (25%), Gaps = 176/933 (18%) Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 E++ + + + + Y+ I + + + LF Sbjct: 43 EKIEIHKPYVLKQDVDNRLLPHECRETGRTYSGNIF----VKIKLMY-KNEILFHDYRGA 97 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 +LP + + + +L K + +R F I Sbjct: 98 GQLPIMVKSNMCHLSMMTDQELLAVKEDPNEHGGFFIINGYDRIIR-----FHIAHKRNW 152 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 + + V + I K +D + + + + Sbjct: 153 VFGIYSKPKNSIFSGYS---CSIRSVCDDEIGQKNEIVHTVDGNIFLKCFFYHKGYLIPI 209 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYI-SETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 + L + + ++T + I T P ++ L + + Sbjct: 210 IYILRALQNTTDKEIYTLLNQNPRAIEFLTKSNQPYYNKDECLNYLGSRFK--------- 260 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 F D Y G NR L S I + +I + KL + +GK Sbjct: 261 -------HIFRIDNY--KEAGEELLNRIL---IHLSSHIDKFNLLIYSINKLFKLIDGKI 308 Query: 441 EVDDIDHLGNRRIRSVGEMA-------ENQFRVGLVR----------------------- 470 + +DID N + + ++ +F+ Sbjct: 309 KSEDIDLSSNHELYTEAQLIPLCIKEHLEEFKKLFKTRIIKLFKREVKNQYRDNETDTEI 368 Query: 471 ------------------------------VERAVKERLSLGDLD--TLMPQDMINAKPI 498 + + + E DLD T + + + Sbjct: 369 TTQIDDIMSTNRSTNINDTVEFDKLFSDEFMIKKIVELFKKTDLDIGTKIHKFLSTGNIT 428 Query: 499 SAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 + + +S + + N +H +S G VR + P +G Sbjct: 429 TYNCSDLLQTSGFTFLSGRINYWEFASHFYSVS---RGAFFSNLKITSVRKLQPESFGFF 485 Query: 559 CPIETPEGPNIGLINSLSVYAQT--NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI 616 CPI TP+G GL+ L+ + ++Y F ++ + + + ++ Sbjct: 486 CPINTPDGSLCGLLTYLTQQCEITCSKYIFDTNILYQLGVSFINLNNNMIPVFY-NGKIM 544 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 + + + K E D++D + +S +S+ + +++ Sbjct: 545 GYTSYPIKLIEDLRNYRCKNKLKIEIVYEFGDKIDEI-ISICDDISLLIRKVWNKKNN-- 601 Query: 677 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736 +G Q L + T + + ++ + + + D + + Sbjct: 602 MEEYIGIKEQVFLDIELGT---VHNTFNYKEIDIN---NMFSIIANTIPFADHNPSPRNI 655 Query: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTC---INQMPCVSLGEPVERGDVLADGPSTDLGE 793 + +M GI YN+ R + Q P + + Sbjct: 656 YQCQMAKQAMGIAAYNIKY--RVDNKLYNINYLQHPLIQTSNYQC------------FEK 701 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD 853 LG N VA + + GY+ ED+I++++ V F + + Sbjct: 702 FPLGFNCIVAVLSYTGYDMEDAIILNKASVNRGMFNGFITMNEKIILEKNDKILYTPPIE 761 Query: 854 IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 + GI+ Sbjct: 762 SKLKTNDIMLTYKSDGIIK----------------------------------------- 780 Query: 914 KDSSLRVPNGVSGTVIDVQVFTRDGVEKDK---RALEIEEMQLKQAKKDLSEELQILEAG 970 ++R N G+V ++VF EK K S Q Sbjct: 781 ---TVRYENIEMGSVEKIRVFQNSLTEKSNLTVIFTFRILRNPVVGDKFCSRHGQKGICA 837 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + + P + + Sbjct: 838 FLWNEIDMPFTENGLKPDIIINPHAFPSRMTIG 870 >UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BKT9_9CRYP Length = 1129 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 114/957 (11%), Positives = 253/957 (26%), Gaps = 137/957 (14%) Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSD----KGKTHSSGKVLYNARIIPYRGSWLDFE- 187 + +I +++ G+ K K I Y G +L Sbjct: 37 SNNILIQDKLKILRHFTLEIFGIHLSLPNFFLKNKKIKKIPRQCRELKINYSGDFLLGIS 96 Query: 188 -FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 K F I + +P + N ++ L Sbjct: 97 SVFGKHGKFSFIYKIGNIPIMVKSLKCNLYQQKKKQLIEMDEEEIEMGG----------- 145 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 F I K+ + + T Sbjct: 146 -----YFIINGMEKMIRLLIVPKKNISFTLSRLTNTSRGNLCTTLSCSFRSVDRLQTSRT 200 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS---AL 363 L N + ++ + + I + + I E+L + D+ + Sbjct: 201 LHLHYLTNGSIHARIIVQKKEFFIPVIMLIKSLMPISDKKIFESLTKTFSKDKFYRIRIM 260 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSE---DRYDLSAVGRMKFNRSLLREEIEGSGIL 420 I + T+ + +F + + D ++G +L E Sbjct: 261 AMIKDAHETCDLKTQISVLEFLGKVFKTSLQTNTIDAKSIGEKFLFNHILIHLGEDKE-A 319 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV--KER 478 ++ ++ KL+ ++ D+ D L ++ G + F+ + ++ Sbjct: 320 KVKLLLFMINKLLSVQKKISIEDNPDSLSSQEFLLPGHLIMVYFKEKFESSLNFIFSQKE 379 Query: 479 LSLGDLDTLMP--------------------------QDMINAKPISAAVKEFFGSSQLS 512 + Q + +S E +S LS Sbjct: 380 FEQNISNNFNKEGKSFQKQFCTDFLSKAFMTTGKGLAQIISTGSYVSKFNHELSQTSGLS 439 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 +++ N +++ R ++ G E R + P +G +CP+ TP+G G++ Sbjct: 440 VSIERINFGRFLSYFR---SIHRGKFFFELKNTSGRKLLPQSWGFLCPVHTPDGALCGIL 496 Query: 573 NSLSVYAQTNEYGFLETPYRK------VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE 626 N + + L + K + + ++ S ++ Sbjct: 497 NHTASSVLVSLSNPLNCDFFKKYFFRYLPKNFLKEKKISSSIFMIDGKILGF--IPKFFF 554 Query: 627 GHFVEDLVTCRS--------KGESSLFSRDQVDYMDVSTQQVVSVGASLIP--------- 669 FV+ L T + E SR S + G L P Sbjct: 555 KSFVDKLRTEKVSVLGKISLGCEIFSISRFNRKCSFPSCILLSQDGRPLRPVKWFSFKKK 614 Query: 670 -------------FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 FL + + + L M + Sbjct: 615 KKFSVFKKKNEKDFLNYCSEIEIIGTLEQCFLNIDNLDYQSSFFTKNMVGTHSEIEASNI 674 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 ++ G + D ++ + + +M G Y + R + + P V P Sbjct: 675 LSVIAGATPFSDLNQSPRNMYQCQMSKQSVGTPFYTF--WRRDDIKSFFLLNPQV----P 728 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 + R ++ DG + G N V+ + + G++ ED++++++ ++ ++ Sbjct: 729 ICRNKIIQDG--LQMDAFPNGFNSVVSVITYTGFDMEDAMIINKSSIERGFASSNVYNCF 786 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 I + K E ++ G + G LV Sbjct: 787 DLD----------IKPSLLKKSNFFKKKKTEENVLKTGDLLKKGAPLV------------ 824 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 P+E +A +SS + +++F+ ++ I+ Sbjct: 825 PKESWYSIHKKNEAFFCYNSS------EKAIIDQIKIFSDIENNQNIEKNSIKIRS---R 875 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ 1013 ++ L + G + + + L P + G + + Sbjct: 876 RRPLVGDKFASRHGQKGVFSYLYSSIDLPFTDLGMNPEIIFNPHGFPSRMTIGVILE 932 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 86/475 (18%), Positives = 148/475 (31%), Gaps = 80/475 (16%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 LL + + L++ +G V V T G + + + Sbjct: 709 YTFWRRDDIKSFFLLNPQVPICRNKIIQDGLQMDAFPNGFNSVVSVITYTGFDMEDAMII 768 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + L + + + + + L L+ G K Sbjct: 769 NKSSIERGFASSNVYNCFDL--DIKPSLLKKSNFFKKKKTEENVLKTGDLLKKGAPLVPK 826 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 ++ + + +K + KI D ++ + + +RR GDK A Sbjct: 827 ESWYSIHKKNEAFFCYNSSEKAIIDQIKI-FSDIENNQNIEKNSIKIRSRRRPLVGDKFA 885 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 RHG KGV S + D+P+ + G +I+ NP H + IG Sbjct: 886 SRHGQKGVFSYLYSSIDLPFTDLGMNPEIIFNP---------------HGFPSRMTIGVI 930 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 + +M+ + G+ T F Sbjct: 931 LESMIGK---------------------------------------IGALDGVFHDTTPF 951 Query: 1188 ----DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 + A E L+ G Y G +GE F V +G + +L H+V DK Sbjct: 952 RFGQNRAAIYHFGEKLRKSGFQFYGNEIFYSGYSGEPFSIDVFLGIVNYQRLRHMVLDKY 1011 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 + G + +T+QP+ GK G RFGEME A+ G + L + L SD R Sbjct: 1012 QISNQGPKNSLTRQPIKGKKIGGSIRFGEMERDAILGQGCVFLLHDRLQTSSDLHASRLN 1071 Query: 1304 MYKNIVDGNHQM-------------------EPGMPESFNVLLKEIRSLGINIEL 1339 + K + + + +P LL E+ S+ + I Sbjct: 1072 IEKGSFFDSEKPTSHTFFYKKKFFEKKVINRKILLPYVIKFLLIELASINLKINF 1126 >UniRef50_Q1L6B6 RNA polymerase II second largest subunit (Fragment) n=26 Tax=Spermatophyta RepID=Q1L6B6_9CARY Length = 667 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 89/640 (13%), Positives = 186/640 (29%), Gaps = 99/640 (15%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 K+P + DL + + + L + + + VY Sbjct: 52 KVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQ----EKMSTNHVY 107 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD----------YIDESTGELICA 312 V K R+ + + P + +++++ YI + + Sbjct: 108 VFKKRQPNKYAYVAEVRSMAENQNRPPSTMFVRMLSRAGAKGGGSSGQYIKATLPYIRTE 167 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP-TNDRLSALVEIYRMMR 371 + + L ++ +D + +L ++ AL I + Sbjct: 168 IPIIIIFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKR-- 225 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 E + + L VG E ++ + Sbjct: 226 --GATVGVTREKRIKYAKEILQKEMLPHVG-----------VGEYCETKKAYYFGYIIHR 272 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMP 489 L+ G+ DD DH GN+R+ G + FR+ ++ R V+ + + Sbjct: 273 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDQGKDVNL 332 Query: 490 QDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRRISALGPGG 537 Q I AK I++ +K + SQ +++ S ++H RR+++ Sbjct: 333 QFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNS----P 388 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN--------------- 582 + RE + R +H + +G +CP ETPEG GL+ +L++ Sbjct: 389 IGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEW 448 Query: 583 --------------------EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 622 G P + + T+ +S N Sbjct: 449 STENFEACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISPAVIPQATKIFVNGC 508 Query: 623 LDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 V+ L R + + + V + + ++ + L + R Sbjct: 509 WVGIHRDPDLLVKTLRQLRRRVDVNTEVGV-VRDIRLKELRIYTDYGRCSRPLFIVEKQR 567 Query: 679 ALMGAN----MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA---KRGGVVQYVDASR 731 L+ +Q++ P LV G + + T + + ++ Sbjct: 568 LLIKKKDIRALQQRESPDEGGWHDLVAKGFIEYIDTEEEETTMISMTINDLITARLNPEE 627 Query: 732 -IVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQ 767 E++P I + +S +NT + Sbjct: 628 AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSA 667 Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 28/126 (22%) Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK-EQEVYMGEIPLMTDNG--- 134 + ++R +TYSAPL V + + ++ V + + +V++G++P+M + Sbjct: 4 TLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVSEAQDFTKVFIGKVPIMLRSSYCT 63 Query: 135 ---------------------TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 F+ING+E+V+++Q S + K K Y Sbjct: 64 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF---KKRQPNKYAYV 120 Query: 174 ARIIPY 179 A + Sbjct: 121 AEVRSM 126 >UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax=cellular organisms RepID=Q1JNX7_STRPC Length = 249 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 124/258 (48%), Positives = 154/258 (59%), Gaps = 54/258 (20%) Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MPY +GTPVDI+LNPLGVPSRMNI G + L Sbjct: 1 MPYLPDGTPVDIMLNPLGVPSRMNI---------------GQVMELHLGMAARNL----- 40 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 G+ IATPVFDGA ++ + ++ + Sbjct: 41 ----------------------------------GIHIATPVFDGASSEDLWDTVREAGM 66 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 + + LYDGRTGE F+ V+VG MYM+KL+H+VDDK+HARS G YSLVTQQPLGGKAQ Sbjct: 67 DSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQ 126 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 FGGQRFGEMEVWALEAYGA+ LQE+LT KSDDV GR K Y+ I G +PG+PESF Sbjct: 127 FGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFR 186 Query: 1325 VLLKEIRSLGINIELEDE 1342 VL+KE++SLG+++ + DE Sbjct: 187 VLVKELQSLGLDMRVLDE 204 >UniRef50_Q06VE3 RNA polymerase subunit n=3 Tax=Ascovirus RepID=Q06VE3_TNAVC Length = 1160 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 143/1060 (13%), Positives = 313/1060 (29%), Gaps = 156/1060 (14%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M +Y K + F K + QLDSF F++ + P+ Sbjct: 1 MSTTYDSYKVVELWFKKY-------GTVKAQLDSFTSFLDN-------IRTVLHDEPPLV 46 Query: 61 SYSGNSELQYVSYRLGEPVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 G +++ + P + +++G+ Y + V + Sbjct: 47 --IGGEVIRFENVTFLTPSYLVNGISKTLYPSIARMKGLNYEFTMCVDV----------I 94 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVING---TERVIVSQLHRSPGVFFDSDKGKTHSSG 168 +++ V + ++P M + + G E + ++ PG +F + + G Sbjct: 95 NETTGVRDNGVELCQLPCMVGSEMCNLKGMSDAELLTHGEILGIPGGYFIHNGVERVLIG 154 Query: 169 --KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE 226 K YN I+ + +++ ++ R T +A+ T Sbjct: 155 HIKPAYNTPIV----------YKTRNDKWICQLRSMNDE-TAKSKAVAITRS-------- 195 Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI---RQLEKDDVK 283 L +E +R + A+ + Sbjct: 196 ------NSGALVVEFDSGAVRTTITTKSANGKEDTSTSTTITAGAKVFLVSEVMRDLLGG 249 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH 343 + Y+ G + +I ++ E++ A L ++ + E T Sbjct: 250 DLGKLKTYLGGDYLDTTHISDTVDEILQAPENLQVYPELVRVVRECINNGEKPLTITTTI 309 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRP-GEPPTREAAESLFENLFFSEDRYDLSAVGR 402 + + + ++ E+Y + P +E A+ + + Sbjct: 310 KKIL---VVPKRVSTKVIQRSELYNRLEPVIRECVKEGADITDIMVIVNNAAKYKPLHDY 366 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 + ++ + +++++ + G + + + +R+ G M + Sbjct: 367 STLFMHIGIRC---DNVVRAHFLGNMIRRYVLTEKGAIKEESREQYSKKRVDFAGTMCLD 423 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDMINA--KPISAAVKEFFGSSQL--------- 511 F++ + R S D P + INA + I +K F + Sbjct: 424 LFKMTWKQFLIDAASRTS----DRCNPINAINAVKRGIGYQIKMCFVHGRWGAKNAEHKT 479 Query: 512 ----SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 + + + I RR+ + +E +R + +H C +ET EG Sbjct: 480 IGIVEAIPVKTSVATSIDSLRRMKL----QVHKENKDRSIRKLCTSHAFFACCVETTEGA 535 Query: 568 NIGLINSLSVYAQTNEYGF-----LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 622 ++G+ +L+ A + + + T E S + Sbjct: 536 DVGIRLALAAVAFASVRQPTMLVRDIIEFTLLDKLKPTLECVATSPKYAAILLNGTPIGY 595 Query: 623 LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD--DANRAL 680 +++ ++ L R + +DY+ V V + L D + Sbjct: 596 VEDHEITIKILRKLRDLRRFNDDVSISMDYI-VKCIDVWCDCGRFVRPLLVKSHDMCEKI 654 Query: 681 MGAN-MQRQAVPTLRADKP--------LVGTGMERAVAVDSGV-----TAVAKRGGVVQY 726 M AN M + + + T E + + G + Y Sbjct: 655 MEANTMDELEQSLVVVHRDAIEISRSEIAMTPNEAILDDYEYSELNPSCMLGLLAGEIPY 714 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN--QMPCVSLGEPVERGDVLA 784 + + + M GI + +++K+ + + +N Q P ++ Sbjct: 715 ANYTPSPRACYKTNMARQSMGI-LPSISKFNNHSNSIHLNYAQAPIITTRC--------- 764 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 +T + E G N VA M G+N EDSI++++ + F +E+ R Sbjct: 765 -AKATKVNEYPNGINAIVAVMAHTGFNQEDSIIINKSALDRGMFNATQRREITVDLRIGT 823 Query: 845 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 + + A + E G+ +G+ + GD L+GKV+ Sbjct: 824 IVDDMCKPPEDLRIRANYDNIGEDGLPIMGSIIKKGDALLGKVS---------------- 867 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL 964 S +D+S+ G V V++ R + + K S Sbjct: 868 -TDRNTSRREDTSIIARMQDEGVVKSVKI-----DGSSVRIRLEVVLDVMIGDKFCSAMA 921 Query: 965 QILEAGLFSRIRAVLVAGG-VEAEKLDKLPRDRWLELGLT 1003 Q G+ + + + + Sbjct: 922 QKGTCGMILPDIDMPFVADSGMIPDILVNVHSMPSRMTVN 961 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 83/477 (17%), Positives = 148/477 (31%), Gaps = 72/477 (15%) Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 ++ ++ + +A PNG++ V V T E Sbjct: 736 ILPSISKFNNHSNSIHLNYAQAPIITTRCAKATKVNEYPNGINAIVA-VMAHTGFNQEDS 794 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + + E L G D + D +G Sbjct: 795 IIINKSALDRGMFNATQRREITVDLRIGTIVDDMCKPPEDLRIRANYDNIGEDGLPIMGS 854 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 ++ L +++ + + E + + + G V++ L V + Sbjct: 855 IIKKGDALLGKVSTDRNTSRREDTSIIARMQDEGVVKSVKIDG--SSVRIRLEVVLDVMI 912 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDEN-GTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK KG I P DMP+ + G DI++N +PSRM + QI+ + G A Sbjct: 913 GDKFCSAMAQKGTCGMILPDIDMPFVADSGMIPDILVNVHSMPSRMTVNQIMASMAGKLA 972 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 + +D S F + Sbjct: 973 CIT-------------------------------ARNIDGSPFQLDV------------- 988 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 ++ E L G + +G TGE F P+ +G +Y L+ LV Sbjct: 989 -------NDVLFDLCEQLAEVKYDKDGCETMCNGLTGEMFSCPIFIGVVYYLRPVQLVRH 1041 Query: 1242 KMHARSTGS-YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 K+ + +T + + +T+QPL G+A GG R GEME L +G+ LQE + SD Sbjct: 1042 KIFSSTTTTMRNHLTRQPLNGRAHEGGLRVGEMEKDDLLRHGSINFLQERMLTLSDKHIM 1101 Query: 1301 RTKMYKNI----------------VDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 +P + + + ++ +G+ ++ Sbjct: 1102 MICTICGSESHVALRSDGSFVCLRCKQLMVNPITIPYAAKLFFQYLQGVGLGVKYNI 1158 >UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hypnoides RepID=D0EVW5_9CHLO Length = 1310 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 128/516 (24%), Positives = 220/516 (42%), Gaps = 38/516 (7%) Query: 96 LRVKLRLVIYEREAPEGTVK-DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPG 154 + K+RL+ + K + ++ Y E L+ +I + + S Sbjct: 1 MYKKIRLIYIKNGNLLNLWKHFLFSKKKYSTEYFLLNCRIKKIIEPAIKYKSNNWKLSYV 60 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 ++ K S V + + + K + D R + + Sbjct: 61 LYILYFFQKKESKKFVNFFSES--------RLDNLKKSSQRAECDENRLMS--------S 104 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 QI F + + + L L + F I +V V + R + Sbjct: 105 LRNHQIFFSFLLIHNKKKKIRFQWVFLGNLPLMTKRGHFIINGAPRVIVNQIIRAAGVYY 164 Query: 275 RQLEKD------DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 +Q V+ I+ + V + + ++ + + L Sbjct: 165 QQQVNKVIKKGQKQIYRTFYVDIISYRGVWLRFELDKKRQIWVCMKKTPKMPIFVFLKFM 224 Query: 329 GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENL 388 G + L + T T + L L + +++ + Sbjct: 225 GFSKKNILSNVRNIQPNFFKNT--KMHTRNFLFYLTQNFQLEKTFNHT-------FTYRK 275 Query: 389 FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 F + YDL +GR + N L IL+ D + + +L+D+ N + VDDID+L Sbjct: 276 FLNPQIYDLGIMGRKRLNSKLGL--RTKKTILTPSDFLKITYRLLDLTNHQDVVDDIDNL 333 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 GNRRIR+VGE+ + QF R+ + ++E++ + + +P+++ ++EFFGS Sbjct: 334 GNRRIRTVGELLKIQFFQATFRLNKILEEKIKKTESMD----SIFTTRPMNSVLREFFGS 389 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 QLSQF+DQ NPLSE+THKRRIS LGP G+ RE AG ++R +H T++GR+CPIETPEG N Sbjct: 390 CQLSQFLDQTNPLSELTHKRRISCLGPNGIQRETAGMDIRGIHSTYFGRICPIETPEGQN 449 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 GL+NSL++++ N GFLE+ + K+ G + ++ Sbjct: 450 AGLVNSLTIFSTKNADGFLESIFYKIYKGQIQKQLE 485 >UniRef50_P42487 DNA-directed RNA polymerase subunit 2 n=7 Tax=African swine fever virus RepID=RPB2_ASFB7 Length = 1242 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 136/1095 (12%), Positives = 291/1095 (26%), Gaps = 193/1095 (17%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAF---------RSVFPIQSYSGNSEL 68 ++ L+ + SF ++ + F R I + ++ Sbjct: 30 ISAAVNSTGLIGYNIKSFDDLMDNGIPQIV--KQMFNVDITYKDQRDHTEIDKLRESVQI 87 Query: 69 QY--VSYRLGEPVF-----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 Q+ + P + ++ G++YS P+ + +++ + Sbjct: 88 QFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAEVILTAHYSNGR--- 144 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 QEV IP + ++ G+ R L K Sbjct: 145 ----QEVKRASIPPFQVSTFPIMRGSNRCHTHHL--------SKTAKKEIGEDPNEPGGY 192 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 I G W +L + + T I ++ EI Sbjct: 193 FIARGGEW----------------------VVDLLENIRFNTLHIHYHTMQQGNNEIIRG 230 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 + I G + + I ++ + I Sbjct: 231 EF-----------------ISQPGGAFENSSQIIIRYMTTGAITIEINSTKFSKLRIPWY 273 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 ++ + + +I E + L S IE L + P V Sbjct: 274 LIFRMFGMTGDDSII-----EQVVFDLESNSPVNTFMIEILEKSIHVLDPIFQP---VQH 325 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 +R + + + + + +A EN + L+ + ++ + Sbjct: 326 EPNREKIIQFLSEKV--SKFVSNPSAYKSDENAVQYLNERQLTILDKILLPH---MGQTA 380 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR----- 470 + + + ++ K++ + D D +R+ G F+ Sbjct: 381 DTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNTSVIAP 440 Query: 471 VERAVKERLSLGDLDTLMPQDMI----------NAKPISAAVKEFFGSSQ---------- 510 + KE L + L +++I A ++ ++++ S Sbjct: 441 IINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPI 500 Query: 511 ----LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE-VRDVHPTHYGRVCPIETPE 565 +Q +++ N L+ I+ R ++ +++ + +R VH ++ G +C ++ + Sbjct: 501 VNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMMRRVHASYPGYICVAQSAD 560 Query: 566 -GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGN------YVIAQ 618 G +G+ L++ A G + + +++ ++ +S + ++ + Sbjct: 561 TGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARVFINGE 620 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 + R +G+ V + L L D N Sbjct: 621 WIGCCTNAFELAQRYRMFRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLIVDNNI 680 Query: 679 ALMGANM--------------QRQAVPTLRAD-----------------KPLVGTGMERA 707 ++ +P ++ + LV G+ Sbjct: 681 EKYNQACYKAAEARKKGDKDWEKHKIPFIQNTRFTSQMAKDILAGTLTLEDLVAQGICEF 740 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ---NTC 764 + + + +++ V + P ++ Y Q T Sbjct: 741 ITPEEAENCLVAF-SIIELRKHKHDVTRRFTHVDVPQAILGLAALVSPYANCTQPARVTY 799 Query: 765 INQMPCVSLGEPVERGDVLAD--------------GPSTDLGELALGQNMRVAFMPWNGY 810 + G D + G N VA+M + GY Sbjct: 800 ETNQGRQTGGWYCFSWPYRVDMNRFFQFYNEMPLVKTIAHNYVIPNGLNTIVAYMIYGGY 859 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRD--TKLGPEEITADIPNVGEAALSKLDES 868 N EDS++VS+ + F +E G + A KL Sbjct: 860 NQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIESFGKPDPLITKNLKPGANYEKL-VD 918 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 G V +G V GDI++GKV + ++ + D S+ V Sbjct: 919 GFVPVGTVVKKGDIIIGKVAKIRGEK-------------DELNKYIDRSVMYGFDEPAVV 965 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 V E E L K S A L + Sbjct: 966 DAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPD 1025 Query: 989 LDKLPRDRWLELGLT 1003 L P + Sbjct: 1026 LIVNPHSHPSRMTNG 1040 Score = 217 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 90/451 (19%), Positives = 156/451 (34%), Gaps = 86/451 (19%) Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 + +PNG++ V ++ E + + A EE LE+ + Sbjct: 839 HNYVIPNGLNTIVAY-MIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDIE--- 894 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 + ++ ++ + + + + + +++ E ++ + R Sbjct: 895 SFGKPDPLITKNLKPGANYEKLVDGFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDRS 954 Query: 1036 ITQGDDLAPGVLKIVK-----------VYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 + G D V +++ + L +R + GDKM+ R GNKG+ + P D Sbjct: 955 VMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSD 1014 Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MP+ E+G D+++NP PS G I + Sbjct: 1015 MPFTEDGLQPDLIVNPHSHPS---------------RMTNGQMIETTVG----------- 1048 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 N +G+ F + E L L Sbjct: 1049 ----------------------------LANALQGVVTDGTAFLPINVQLLSERLAQEGL 1080 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV-DDKMHARSTGSYSLVTQQPLGGKA 1263 +G ++++G+TGE F+ + +G Y +L V DD+ S G +T QPL GK Sbjct: 1081 RFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKR 1140 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN-------------IVD 1310 GG R GEME W L A GA T+ E SD ++ Sbjct: 1141 SHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYNASHPIYKCMN 1200 Query: 1311 GNHQMEPGMPESFN---VLLKEIRSLGINIE 1338 + Q + GM +S V E+R+ +NI Sbjct: 1201 CDVQADIGMVDSRRSSIVFQHEMRAANVNIT 1231 >UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S96_GUITH Length = 1049 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 117/911 (12%), Positives = 268/911 (29%), Gaps = 96/911 (10%) Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM 239 R + D +LF+RI+ ++K ++ + + + + K Sbjct: 75 RIKDTTYSIDIYSDLFIRINNKKKFINNNLIFKIPLMLKCNRCILYGKKEDFYIK----- 129 Query: 240 ELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 + E F I+ KV + + + + R + +K V Y + Sbjct: 130 --INECPLDPGGYFIIKGTEKVILIQEKLVLNRIGIEKDKSGNFYSYVISSYKKRNTKSF 187 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP----YISETLRVDP 355 I E+ +E + + L G + + Y Sbjct: 188 IIIKENKIYFRNKIFIE-DIPIFIILKAFGFENNLDIIDLIGYEFESTLFYSLTESLKIG 246 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 ++ ++ + + + + E + F F++E Y + + ++ + Sbjct: 247 FVNQFQSVCYLMQKL---DIRFIETNKITF---FYNESNY---QILDHILSHIIVNKNPV 297 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR--VER 473 + + +++KL+ +D D+ GN+R+ G++ E L + +E Sbjct: 298 SQNLEKGIFMTMMIRKLLYALQIPDLLDSKDYYGNKRLELSGDLVEILLEDLLHKSWIES 357 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPL 521 +++ + I + IS ++ F + +Q + + + + Sbjct: 358 KKFIEKKKIEVNETIYHHFIKSDFISYGIENAFITGNWKINKYGIDKNGITQILSRLSFM 417 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 S + + S+ + R R++HPT + +C +TPEG + GLI +L++ + Sbjct: 418 SSFSMLLKTSS----NFEKTRKSISPRNLHPTQWRFICTSDTPEGESCGLIKNLALLSHI 473 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY---VIAQANSNLDEEGHFVEDLVTCRS 638 + + ++ + S NY N L F + C Sbjct: 474 SIQEND--YFLAKVCNILGVDSKLSSIKTIKNYLNMTKIFLNQKLIGFHQFPSKFLFCFR 531 Query: 639 KGESSLFSRDQVDYMDVSTQQVV---SVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 S V ST +++ S L L + + + Sbjct: 532 NMRRSNLIESSVSIYWDSTMKLIWILSDKGRLCRPLYIIENGILKSKKKHLKLYSKKIIN 591 Query: 696 DKPLVGTGMERAVAVDSGV-----------------------TAVAKRGGVVQYVDASRI 732 L G + + + ++ + D ++ Sbjct: 592 WNILTKFGFIEYIDSNEENNTIIADSLKAINFRSSHLEISEGNILGISASLIPFSDHNQS 651 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + M + +R + + P +P+ + +L G Sbjct: 652 PRNTYQCSMGKQS--ASFLGFNQNSRIDITLSLLIYPQ----KPILKTKILN---LIGAG 702 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 + G N ++ M + GY+ ED+I++++ V+ F T +++ + + + Sbjct: 703 KCPTGINTCISIMSFTGYDVEDAIILNKSSVERGFFKTAFLRKTKIEISSFRHLTQLFSK 762 Query: 853 DIPNVGEAALSKLDE--SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 N E L++ + I + + D LV T + R Sbjct: 763 VNHNNKE-VFEFLNKSNNNNQKITSNLKYSDNLVVVKYGLDLTLAKFLIRECRN----PE 817 Query: 911 SDVKDSSLRVPNGVSGTV--IDVQVFTRDGVEKDKRAL--------EIEEMQLKQAKKDL 960 K SS G+ G + F+ G+ D I + K Sbjct: 818 IGDKFSSRHGQKGICGFIKPQQDMPFSEKGICPDIIMNPHGFPSRMTIGKTIEIILSKSG 877 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 + + +F +I + + + D + + Sbjct: 878 CISGKFKDGSIFKKININTIVKSLRSFGFVSNGEDFMYNGITGNLINNQIYSGIVFYQRL 937 Query: 1021 LKHEFEKKLEA 1031 +K Sbjct: 938 KHMVKDKIHSR 948 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 89/480 (18%), Positives = 172/480 (35%), Gaps = 73/480 (15%) Query: 876 EVTGGDIL--VGKVTPKGETQLTPEE-------KLLRAIFGEKASDVKDSSLRVPNGVSG 926 E++ G+IL + P + +P K + G + D +L + Sbjct: 629 EISEGNILGISASLIPFSDHNQSPRNTYQCSMGKQSASFLGFNQNSRIDITLSLLIYPQK 688 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 ++ ++ G K + + D+ + + + ++ + + Sbjct: 689 PILKTKILNLIGAGKCPTGINTCISIMSFTGYDVEDAIILNKSSVERGFFKTAF---LRK 745 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 K++ +L ++ + + + + L+ + L Sbjct: 746 TKIEISSFRHLTQLFSKVNHNNKEVFEFLNKSNNNNQKITSNLKYSDNLVVVKYGL---D 802 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 L + K + R + GDK + RHG KG+ I P +DMP+ E G DI Sbjct: 803 LTLAKFLIRECRNPEIGDKFSSRHGQKGICGFIKPQQDMPFSEKGICPDI---------- 852 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 I+ H + IG I Sbjct: 853 -----IMNPHGFPSRMTIGKTI-------------------------------------- 869 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 E++ G +F I + L+ ++G+ +Y+G TG + Sbjct: 870 -EIILSKSGCISGKFKDGSIFKKININTIVKSLRSFGFVSNGEDFMYNGITGNLINNQIY 928 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 G ++ +L H+V DK+H+R+TG S +T QP+ G+++ GG RFGEME L ++GA+ Sbjct: 929 SGIVFYQRLKHMVKDKIHSRATGIKSKLTYQPVEGRSKGGGLRFGEMERDCLISFGASEL 988 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIV----DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + L + SD + I+ + + +P + +LL+E++S+ I L Sbjct: 989 ALDRLLLNSDCYEAKFDKNSGIIHTSNSNTNVVAVKIPYACKLLLQELQSMNIIARLNFN 1048 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 61/451 (13%), Positives = 129/451 (28%), Gaps = 54/451 (11%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV-FPIQSYSGNSELQYVSYRLGEPV 79 L L+ Q++S+ K I Y L + + + I +Y+ E+++++ + Sbjct: 6 YLISRGLIWQQIESYNKLI------NYQLISILKKIENEIWNYNSFLEIKFINTSMSIGT 59 Query: 80 F---------DVQECQIRGVTYSAPLRVKL-----------------RLVIYEREAPEGT 113 F +I+ TYS + L ++ + + Sbjct: 60 FFEKNIGNTVTPFHSRIKDTTYSIDIYSDLFIRINNKKKFINNNLIFKIPLMLKCNRCIL 119 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 ++ + + E PL G F+I GTE+VI+ Q K S Y Sbjct: 120 YGKKEDFYIKINECPL-DPGGYFIIKGTEKVILIQEKLVLNRI---GIEKDKSGNFYSYV 175 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 R + F +P IIL+A F + Sbjct: 176 ISSYKKRNTKSFIIIKENKIYFRNKIFIEDIPIFIILKAFG---------FENNLDIIDL 226 Query: 234 DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY-I 292 + L + V + IR +E + + Y I Sbjct: 227 IGYEFESTLFYSLTESLKIGFVNQFQSVCYLMQKLD----IRFIETNKITFFYNESNYQI 282 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 +++ ++++ + +++ + L + + +S L Sbjct: 283 LDHILSHIIVNKNPVSQNLEKGIFMTMMIRKLLYALQIPDLLDSKDYYGNKRLELSGDLV 342 Query: 353 VDPTND--RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 D S + + + ++ F S + G K N Sbjct: 343 EILLEDLLHKSWIESKKFIEKKKIEVNETIYHHFIKSDFISYGIENAFITGNWKIN-KYG 401 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 ++ + ILS+ + L+ + + Sbjct: 402 IDKNGITQILSRLSFMSSFSMLLKTSSNFEK 432 >UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Selaginella erythropus RepID=Q1L6V8_9TRAC Length = 593 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 78/443 (17%), Positives = 151/443 (34%), Gaps = 84/443 (18%) Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 P +GT V V + G ++ + + + + ++ S Sbjct: 215 TCPXLTNGTNCVVAVASYGGFNQEDSLIVNQASVDRGLFRSTHFFVKKASLDSKSSQHF- 273 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ--LAEQYDELKHEFE--KKLEAKRR 1034 ++ L D +G + + L + ++ + ++ + Sbjct: 274 -----GKSSDSASLDSDGLPYIGAKMTAGDVVIGRMALTKPXNKFVDKMSNLEQAWVDQV 328 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 + G++ + V V L R Q GDK + HG KGV+ + ED+ + + G Sbjct: 329 VCSMGEE---QDQRHVNVRLRESRCPQVGDKFSSMHGQKGVVGMMLSQEDLLFTQQGIVP 385 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 D+++NP + + + + +++ + + Sbjct: 386 DVIINPHAF---------------PSRQTLAQMLESLVGKTAAM---------------- 414 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 G+ + F + ++ + L GQ R+Y Sbjct: 415 ------------------------GLCLGDTPFTHLRAEQLAQKLAKRGFQKWGQDRVYS 450 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS-TGSYSLVTQQPLGGKAQFGGQRFGEM 1273 G TG T G + +LNHL DKM R G +T QP+ + + GG +FGEM Sbjct: 451 GCTGRMTGAMATFGLTFYQRLNHLSRDKMKCRGGNGPVHPLTHQPVKDRRRQGGTKFGEM 510 Query: 1274 EVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM-----------YKNIVDGNHQMEPG 1318 E L A+GA+ T+QE L + SD V + Sbjct: 511 ERDCLVAHGASATVQERLFLVSDKSLVHVCANCCRLASFNSQQQPGCLFCKRXQRPVAVE 570 Query: 1319 MPESFNVLLKEIRSLGINIELED 1341 MP + +L E++++G+++ Z Sbjct: 571 MPYACKLLRMELQAMGVDMRFZL 593 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 63/432 (14%), Positives = 121/432 (28%), Gaps = 79/432 (18%) Query: 617 AQANSNL----DEEGHFVEDLVTCRSKGES---------------SLFSRDQVDYMD-VS 656 N + G ++ L R + ++ ++ + Sbjct: 2 VFVNGHWKGATRNPGMLLQQLRNLRRGMLIHPEVGFGDAPTASNRKACLQTEIAHVPSRT 61 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGA----NMQRQAVPTLRADKPLVGTGMERAVAVDS 712 ++++ G L+ L D R L+ ++ R P R + L +E A + Sbjct: 62 EIRILTDGGRLLRPLLVVDEQRVLVFMGKHIHLLRAMAPRERFNYMLKSGLVELLGAQEE 121 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG---IDIYNLTKYTRSNQNTCINQM- 768 V ++A EM+P + + S++ T Q Sbjct: 122 SNAVVGM-----TRLEAESSRTAFTHLEMHPASFLGLSASVIPFLDHNHSSRVTHQAQKH 176 Query: 769 PCVSLGEPVERGDVLADGPSTDL-----------------GELALGQNMRVAFMPWNGYN 811 ++G + + L G N VA + G+N Sbjct: 177 GKQAIGVYACDNLSRMEPTAHLYYPQKPLVHSWLAQHLTCPXLTNGTNCVVAVASYGGFN 236 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 EDS++V++ V F + H + + LD G+ Sbjct: 237 QEDSLIVNQASVDRGLFRSTHFFVKKASLDSKSSQH--------FGKSSDSASLDSDGLP 288 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 YIGA++T GD+++G++ P K + ++ N V V Sbjct: 289 YIGAKMTAGDVVIGRMALT-----KPXNKFV---------------DKMSNLEQAWVDQV 328 Query: 932 QVFTRDGVE-KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 + + + E + K S Q G+ +L + Sbjct: 329 VCSMGEEQDQRHVNVRLRESRCPQVGDKFSSMHGQKGVVGMMLSQEDLLFTQQGIVPDVI 388 Query: 991 KLPRDRWLELGL 1002 P L Sbjct: 389 INPHAFPSRQTL 400 >UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB1_LEPTE Length = 1142 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 150/570 (26%), Positives = 254/570 (44%), Gaps = 23/570 (4%) Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILD---LFFEKVIFEIRDNKLQMEL 241 + D +I ++ K L+ L I L + + ++ + ++ Sbjct: 577 TYFRDISKICSAQITQQLKQK--SFLKLLLINPRLISQNNLLVLNRAVNFLKKIQFNLKD 634 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 P + +F+I + + I K + Sbjct: 635 SPNL--NDYQNFEINKLKAHIFKCQIKTQNNLTCCKYIYIKTKFNYINLPIKQFFFTKRF 692 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRI---ETLFTNDLDHGPYISETLRVDPTND 358 + L+ + +L L + L + L N + P + + + + Sbjct: 693 LITEQKLLLGGKFINSNLALTSLLKLHKFSEVVSNSFLIYNANNPNPNPTSIMSMIRPVN 752 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + ++ R L + + + + L ++ + + Sbjct: 753 KSEIYRQLNRRFVRSRLQLNVLKSELTNSHSQLIKANNDPIDRELSI-QILKQDVQKSNP 811 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDID---HLGNRRIRSVGEMAENQFRVGLVRVERAV 475 K I + + + D + L +I ++ + + +++ Sbjct: 812 FNKKG--IYNQRFINKKFLDTSQFIDQELLHFLKTHKIFLDRQLTSLKTKQQNEKLKFIK 869 Query: 476 KERL-SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 ++L + + Q++I I+ A++E FG + LSQFMDQ NPLSEITHKRRIS++G Sbjct: 870 WKKLRNFKNALKNPIQNLITTNAINGALQELFGLNPLSQFMDQINPLSEITHKRRISSMG 929 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGG+ R+ A +VR +HPTHYGR+CPIETPEG N GL+NS ++YA+ N YGFLETP+ KV Sbjct: 930 PGGVNRDNASMDVRSIHPTHYGRICPIETPEGHNAGLVNSPTIYARINNYGFLETPFFKV 989 Query: 595 TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV------EDLVTCRSKGESSLFSRD 648 G + + YL+A +E + ++ + + E E V R + + Sbjct: 990 NSGQIQAKAFYLNAQKEQKFKVSPPDLSCSELQFLPLGPTKIESEVPMRKDFKFQRMAAT 1049 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 Q++++ +S Q++SV SLIPFLEHDDANRALMG+NMQRQAVP L A++P+VGTG+E V Sbjct: 1050 QIEFIGISPLQMISVATSLIPFLEHDDANRALMGSNMQRQAVPLLIAERPVVGTGLEGRV 1109 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNE 738 DS K+ GV+ YV +++++ Sbjct: 1110 IADSSYIMQTKQSGVISYVSNEQVIVQTFH 1139 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 27/223 (12%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VS 72 F + + L + L+ IQ SF + + GL+ + I++ + N +L + + Sbjct: 3 FSVKNKNLLIQNLVEIQQQSFNELLC------VGLKRQLLQLNFIENKTRNIKLIFHAKN 56 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 Y+ P +E ++ T+++ L + + I V +G +P MT Sbjct: 57 YKFILPEITPKEAVLKSKTFASALFIPVEY---------RAKNSIGLYWVLLGHLPFMTK 107 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG----------KVLYNARIIPYRGS 182 G F+ING RV+++Q+ RSPG+++ + + S ++ + IIP RG+ Sbjct: 108 RGHFIINGVPRVVLNQMVRSPGLYYKTTANPQNVSNQVSINDSSHTSPVFYSDIIPNRGT 167 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFF 225 WL E D K N+++R+ R K+P + L+AL Y I L + Sbjct: 168 WLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLY 210 Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 58/368 (15%), Positives = 113/368 (30%), Gaps = 44/368 (11%) Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 I + + F K+ F+ P +L++ + + + + + Sbjct: 39 NFIENKTRNIKLIFHAKNYKFI---LPEITPKEAVLKSKTFASALFIPVEYRAKNSI--- 92 Query: 235 NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR------------QLEKDDV 282 + L + F I +V + + R + + + Sbjct: 93 GLYWVLLGHLPFMTKRGHFIINGVPRVVLNQMVRSPGLYYKTTANPQNVSNQVSINDSSH 152 Query: 283 KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD 342 + I + + + + ++ L G+ Sbjct: 153 TSPVFYSDIIPNRGTWLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLYSR 212 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMM--------------------------RPGEPP 376 L D D SAL +I + + Sbjct: 213 KFLNCDYLLNTDHPADSNSALKKIKVEIEQQKVLKLAALEALDDDDPDIAKQLDYIEKTT 272 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 T E + FF+ YDLS +GR + N+ L +L++ DI K+LI Sbjct: 273 TPEMGKDFLFQSFFNPASYDLSPIGRFQLNKKLNLSIPSDYTVLTEFDIYFATKELIKRA 332 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 DDIDHL RRIRS GE+ E Q G+ R+++ + ++++ +L + Sbjct: 333 TTMSNSDDIDHLQTRRIRSCGELLEIQLGEGIERLQKTIIDKINNTNLKKFAKHSSTYKR 392 Query: 497 PISAAVKE 504 S+++ Sbjct: 393 GTSSSIYR 400 >UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus RepID=Q6YH81_9VIRU Length = 1221 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 147/973 (15%), Positives = 285/973 (29%), Gaps = 144/973 (14%) Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 E P M V RV + P K + +A + D Sbjct: 112 EFPAMVAREKPVSVKGYRVKFGTVRYEPPCPDGKPWEKLTPAMARRTDATYHS--AAVCD 169 Query: 186 FEFDPKDNLFVRIDRRR--KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 L + R K+P + + P Sbjct: 170 LTVTDPKGLEIVYPRLELCKIPVMVGSAVCW----------------TRTEGSPLPGECP 213 Query: 244 ERLRGETASFDIEANGKVYVEKGRRI---TARH---------IRQLEKDDVKLIEVPVEY 291 F I+ +V V R + R + ++ + + V + Sbjct: 214 ---SDPGGYFIIKGKERVVVPHIRPAYDQPCVYKNCDGWLCEFRSVNRETRQTVLVQAKT 270 Query: 292 IAGKVV--AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 + + + YI + + + + + G + + H ++ Sbjct: 271 DCRRKLEFSLPYIKQYVPVGLVFKALGKTAREAVAMCGLGSFSGDE-VSCRTVHHQSMAA 329 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAE-----SLFENLFFSEDRYDLSAVGRMK 404 L + + ++ + + G + AE + EDR S + Sbjct: 330 LLMEQHASAPEDPVADLAKHVPDGRFVYLKQAEGAKQAEDADRASVEEDR--NSKGSKED 387 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 + R +L EI G + + + ++K++ D +G G D D L N+R+ + G + Sbjct: 388 YVRHILAGEIFLHGGDAAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLL 447 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMI-NAKPISAAVKEFFGSSQL------------ 511 L + + + S G L P ++ N+ ++ ++ F + Sbjct: 448 DGLLKQYVKLFVK--SAGCQKNLCPYTVLQNSMVMTNSLHMCFATGNWTVKRLGPPSYVR 505 Query: 512 ---SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 SQ + NN + ++H RRI ++ +R +H +HYG +CP ETPEG Sbjct: 506 VGVSQVLSNNNYGARVSHLRRI----MHAVSFRGKNIRMRQLHSSHYGFLCPYETPEGEK 561 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH 628 +G++ +++ + E V G + + A ++++D +G Sbjct: 562 VGIVLNMAEGVGFSLETPREAVLATVRLGKGLPGFFEGAPARLA-WSGAAGSASVDVDGV 620 Query: 629 F-------VEDLVTCR--------------SKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 V + R + V + S + Sbjct: 621 LCGVTGDPVGFVREARLCLLGVSVVWKKVEREIHLLGCQGRFVRRVLDPEGIRGSRYDNP 680 Query: 668 IPFLEHD-DANRALMGANMQRQAVP----TLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 P E D + + A + P + + G + Sbjct: 681 PPPEERDIEMDPAPSSSPSDFLPRPPGVYVCAQELSVCSLGDGEYADPPASEILTDAMSS 740 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 V+ + D ++ + M G N + R + P Sbjct: 741 VIPFYDHTQSPRNAYQSNMGKQAIGFPAVNCS--DRYDATLHRLDYPQ----------KS 788 Query: 783 LADGPSTD---LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC- 838 L D S E+A G VA M G+N EDS++++ + F+ + + ++C Sbjct: 789 LVDSRSVKRLGFDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYRTVSCA 848 Query: 839 VSRDTKLGPEEITADIPNVG----EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 R TK E + +P+ G E L + G++ + G LV +V K + Sbjct: 849 DKRRTKYDSEVV--CLPDWGLRNREWDYDLLGDDGVIDP---LCAG-ALVRRVEGKRKAA 902 Query: 895 LTPEE------------------------KLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 P + K+ ++ E +D+SL V G + Sbjct: 903 KRPVDQRTGGGPAGLCDALWIPAGTVLVGKVSHSLGPEGNPVRRDASLTVKQSEEGYLDR 962 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 V V +K + + K S Q G + L Sbjct: 963 VTVDVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKNGVVPDLI 1022 Query: 991 KLPRDRWLELGLT 1003 P + + Sbjct: 1023 INPHAFPSRMTVN 1035 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 115/331 (34%), Gaps = 66/331 (19%) Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 K + D+ K+VKV L R + GDK A KG + Sbjct: 946 RDASLTVKQSEEGYLDRVTVDVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVL 1005 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 EDMP+D+NG D+++NP H + + + Sbjct: 1006 TQEDMPFDKNGVVPDLIINP---------------HAFPSRMTVNYLLQMCFGTAA---- 1046 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD-GAKEAEIKELL 1199 + G F+ +I E Sbjct: 1047 -----------------------------------CKLGKTYDATAFEREDVVRDIAEAA 1071 Query: 1200 KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1259 K + LY G TG + + + +L H+V KMH+R+ G +T+QP+ Sbjct: 1072 KEAGIDCW-DSVLYSGSTGRRLPTKIFMAPCPYQRLRHMVSGKMHSRTHGPTDALTRQPV 1130 Query: 1260 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM----------YKNIV 1309 G+++ GG + GEME W ++G + +L+E + SD Y + Sbjct: 1131 AGRSREGGIKIGEMEQWCKISHGVSESLKESVYDTSDKYEVPVCKECGRISDHFEYCRMC 1190 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 D +P + +L +E+RS+GI+I + Sbjct: 1191 DATDVSLVKLPYTTKILFQELRSIGISIAFK 1221 Score = 79.9 bits (195), Expect = 7e-13, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 55/228 (24%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP------- 78 + ++SF + + E +++ + R P Sbjct: 96 NFVRHHIESFDDMLWNEFPAMVAREKPV--------SVKGYRVKFGTVRYEPPCPDGKPW 147 Query: 79 -VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG--- 134 + TY + L + + +I + + +IP+M + Sbjct: 148 EKLTPAMARRTDATYHSAAVCDLTVTDPK-------GLEIVYPRLELCKIPVMVGSAVCW 200 Query: 135 ------------------TFVINGTERVIVSQLHRS---PGVFFDSD-KGKTHSSGKVLY 172 F+I G ERV+V + + P V+ + D S Sbjct: 201 TRTEGSPLPGECPSDPGGYFIIKGKERVVVPHIRPAYDQPCVYKNCDGWLCEFRSVNRET 260 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQ 219 ++ + + D + L + ++ +P ++ +AL T + Sbjct: 261 RQTVL------VQAKTDCRRKLEFSLPYIKQYVPVGLVFKALGKTARE 302 >UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious spleen and kidney necrosis virus RepID=Q5YF54_ISKNV Length = 1053 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 106/575 (18%), Positives = 180/575 (31%), Gaps = 119/575 (20%) Query: 782 VLADGPSTDLGELA---LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 V D + +L + + A +P+ YN S + + + + Sbjct: 583 VSMDSMRAEFMDLPGIVVLTDAMSAVIPF--YNHTQSPRNAYQSNMGKQAVGLPCLNYMS 640 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 T + +P A+ L + + GA +V Sbjct: 641 RWDVT--LDVLMYPQVPLSRSKAMDALSFDTMPH-GAC-----PIV-------------- 678 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 A+ + +DS + + V G + T EK + E E + Sbjct: 679 -----AVLTFDGYNQEDSIILNRSSVQRGMFVSTTYKTLCECEKHVKRCEFERIMCVPVD 733 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 K L L R ++ G+ K + + E Sbjct: 734 KRRPG----LVYDYLGDDGIFDP----------ALARGMFVTAGVVVVGKMSFDQSRPEG 779 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + K+ K VK+ L R + GDK A KG Sbjct: 780 VCCSLAVKPHEEGYFDDKLVFN---MADGCKCVKIKLRKIRIPEMGDKFASFTAQKGTCG 836 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 + DMP+ +G D+V+NP PSRM + +L+ + A G Sbjct: 837 MMYDQWDMPFTADGVVPDLVINPHAFPSRMTVHYLLQMCFELGAVAGG------------ 884 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 G F+ ++ + Sbjct: 885 -----------------------------------------GKGYDATAFNSDGT-DLLK 902 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L+ + +Y GRTG +FE V + KL HLV +K+HAR+TG +T+Q Sbjct: 903 TLEELGYA---KQVMYCGRTGRRFESLVFMAPCPYQKLKHLVANKVHARTTGPVDPLTRQ 959 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK-----------MYK 1306 P+ G+++ GG + GEME W ++GAA L E +T SD + + Sbjct: 960 PVAGRSRDGGIKIGEMEQWCKISHGAAAALHESMTTMSDPYTVPVCSVCHVMTDSYKVCR 1019 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + MP + + +++ S+GI + D Sbjct: 1020 HC-RSVSVQSYAMPYTSKLFFQQLASIGIKTCIMD 1053 Score = 264 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 121/809 (14%), Positives = 227/809 (28%), Gaps = 108/809 (13%) Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + E + F ++ ++ + I + + + ++ + Sbjct: 121 GIGECEKDPGGFFIVKGKERIIIPHIHTAYNIPI--------TMHCTTKKTLVCEMRTHN 172 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET------LRVD 354 + + +++ +S + + Sbjct: 173 ETTGNNLLVKVRLMQGCIIEMSVPYIKSFLPAGAVFNALGVSEEDMLRYCNLAWQRTAQG 232 Query: 355 PTNDRLSAL-VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 A+ + R P E + + + Sbjct: 233 GYVSEHIAMVQYMLMQYRECRPNPFE----YIAKIVAQP-----TVTTEYVRSVLAGVMF 283 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 S +S + ++ L++ G V D D+L +R+ + G + FR + Sbjct: 284 CHTSPEMSGQHLGYMVATLLNAHV-VGAVHDKDNLRWKRVDTSGALILFLFRNLFKQWVC 342 Query: 474 AVKERLSL------GDLDTLMPQDMINAKPISAAVKEFFGSSQL---------------- 511 VK + DL I+ + F + Sbjct: 343 TVKRVMEKSCVVGVPDLQGKSGSVNAITNVITNVLHLAFATGNWLVRKNSGTSKNTYTPR 402 Query: 512 --SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 SQ M N + I++ RR++ + + +VR +H +H G +CP ETPEG + Sbjct: 403 GVSQLMCVQNYGARISNLRRMTH----AVGFKGKNIKVRQLHNSHNGYICPYETPEGDRV 458 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH- 628 G + L++ A V IH L + Q N + G Sbjct: 459 GNVVQLALSATVTVP-------------VCPRNIHTLMMSALRLFADPQGNQPVLLNGEI 505 Query: 629 --FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL-IPFLEHDDANRALMGANM 685 +V D + C L+ V + V V + + M Sbjct: 506 VAWVRDRMLCGMAMMHVLWDYPHVTVVFRHGYGVHCVQRRAAVSCDLSLHRGQYRMVCPS 565 Query: 686 QRQ---AVPTLRADKPLVGTGMERAVAVDSGVTAVA--KRGGVVQYVDASRIVIKVNEDE 740 Q P + +V RA +D V V+ + + ++ + Sbjct: 566 LVQGLLVRPFPSPTERVVSMDSMRAEFMDLPGIVVLTDAMSAVIPFYNHTQSPRNAYQSN 625 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 M G+ L +R + + P V P+ R + + + G Sbjct: 626 MGKQAVGLPC--LNYMSRWDVTLDVLMYPQV----PLSRSKAM---DALSFDTMPHGACP 676 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 VA + ++GYN EDSI+++ VQ F + + L + K E +P Sbjct: 677 IVAVLTFDGYNQEDSIILNRSSVQRGMFVSTTYKTLCECEKHVKRCEFERIMCVPVDKRR 736 Query: 861 ---ALSKLDESGIVYI----GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 L + GI G VT G ++VGK++ F + + Sbjct: 737 PGLVYDYLGDDGIFDPALARGMFVTAGVVVVGKMS-----------------FDQSRPEG 779 Query: 914 KDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973 SL V G D VF K + + + K S Q G+ Sbjct: 780 VCCSLAVKPHEEGYFDDKLVFNMADGCKCVKIKLRKIRIPEMGDKFASFTAQKGTCGMMY 839 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + L P + + Sbjct: 840 DQWDMPFTADGVVPDLVINPHAFPSRMTV 868 Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 66/241 (27%), Gaps = 38/241 (15%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M +T + + L+ + ++ ++ P+ Sbjct: 1 MSQCHTXXMQAHLSY-----WTTPQRLVHHHIAHYEHLLKVHIP------QVVEGEPPVI 49 Query: 61 SYSGNSELQYVSYRLGEPV-FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 ++ + + +P + TY + K L Sbjct: 50 IHNHSVT--FGDVAYSKPSPETPGHARAYDETYETTVSCKAYLT-------CLATGAKHV 100 Query: 120 QEVY-MGEIPLMT---------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGK 163 Q ++ + ++P+M G F++ G ER+I+ +H + + Sbjct: 101 QHIHNLAKMPVMVRAQPLCQGIGECEKDPGGFFIVKGKERIIIPHIHTAYNIPITMHCTT 160 Query: 164 THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQILD 222 + + + + + + + LPA + AL + E +L Sbjct: 161 KKTLVCEMRTHNETTGNNLLVKVRLMQGCIIEMSVPYIKSFLPAGAVFNALGVSEEDMLR 220 Query: 223 L 223 Sbjct: 221 Y 221 >UniRef50_Q4ZJA8 DNA-directed RNA polymerase n=3 Tax=Lymphocystivirus RepID=Q4ZJA8_FLDV Length = 1018 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 118/898 (13%), Positives = 253/898 (28%), Gaps = 128/898 (14%) Query: 144 VIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK 203 V ++ ++ + K K +I P D + N + + + Sbjct: 25 VARDKIIQTTNFVIEF---KNIQYNKP----KITPLEAKQKDLTYAISINYEIDFNGKST 77 Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 + L + + + + + FE+ N F ++ +V + Sbjct: 78 ILEIFSLPLMLRSKLCLTNNVAHQTTFELCPND------------PGGYFIVKGKERVLI 125 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 R + + E + + D ++ + Sbjct: 126 PHIRPRYNVPMVKYEDGFYLCEFRSASETGSSTLIQARTDGKIVLEFSLPYIKQFVPAGT 185 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 G E L ++ + + +Y + T Sbjct: 186 VFKTLGISFEEAFLLCGLGQK---NKHTLNCKSGYYEALSTILYGHYTGNKTVT------ 236 Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVD 443 + + + + + + + S + ++ +L + G+ + Sbjct: 237 --DYVPVDVKCDNKESYVESLLKKEIFNHLEDHSPFNVACHLGYMINRLAAVTAGEAALT 294 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI-NAKPISAAV 502 D D L +R+ + G + E F+ + R +K L + L P +++ N I+ + Sbjct: 295 DKDDLAYKRVDTSGTLIEFLFKGLFKQYVRLIKNSLEI--LKNPDPINIVKNVNVITNGL 352 Query: 503 KEFFGSSQLS---------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 F + S Q + +N S ++H RR+ + + F++ Sbjct: 353 NLCFATGNWSVKKTGPPSYMRVGVSQVLCNHNYGSRLSHLRRL----MHAVGFKGKNFKI 408 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R +H +HYG +CP ETPEG +G++ + ++ ++ G+ ++I L Sbjct: 409 RRLHASHYGFICPYETPEGERVGVVLNTALSTAFSQ-------------GIPKNQIKPLM 455 Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 Y+ + + G V G + V ++V Sbjct: 456 ----EPYIKNSGSFKVILNGEIV---------GYVDDPDQTIKFLKSVLPEEVSVFCYRF 502 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVG----TGMERAVAVDSGVTAVAKRGGV 723 P + ++ R P L K + + + + T V Sbjct: 503 TP-----KIKECHVFSDKGRFLRPVLVESKIIRVCAQEIHHIKYKELPAYSTMTDVMASV 557 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 + + + + + M GI R + P +L + Sbjct: 558 IPFYNHAPSPRIAYQSNMGKQAVGITTLT-GGRDRYDPTFYSLDYPQKALARTICYDRY- 615 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL-ACVSRD 842 + G VA +GYN EDS+++++ + F + Sbjct: 616 ------KFDIMCHGAVPIVAVSTMDGYNQEDSVVLNKSSIDRGLFNITCYKTFVEIEKYK 669 Query: 843 TKLGPEEITADIPNVGEAALSK--LDESGI--VYIGA-------------EVTGGDILVG 885 +K E I ++ L L ++G+ +G G +LVG Sbjct: 670 SKHDSELIAHPDFSIRNRDLDYSLLGKTGVLDPKLGKKNKKYRCPLCDALWFPAGTVLVG 729 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 KV K + +D SL V G + ++ + + Sbjct: 730 KVAKK---------------LIDGVIVYRDVSLAVKADEEGYLDELLDHYTIETGRIIKV 774 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + K S Q G+ R + L P + + Sbjct: 775 KLRSSKIPEIGDKFASFTAQKGTCGMIYRQEDMPFTAEGVVPDLIINPHAFPSRMTIN 832 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 86/449 (19%), Positives = 148/449 (32%), Gaps = 73/449 (16%) Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK-------DLSE 962 V S++ N V++ R +E + K D S Sbjct: 625 VPIVAVSTMDGYNQEDSVVLNKSSIDRGLFNITCYKTFVEIEKYKSKHDSELIAHPDFSI 684 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK 1022 + L+ L + VL + K + P L ++L + + Sbjct: 685 RNRDLDYSLLGKTG-VLDPKLGKKNKKYRCPLCDALWFPAGTVLVGKVAKKLIDGVIVYR 743 Query: 1023 HE-FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 K + + D +I+KV L + + GDK A KG I Sbjct: 744 DVSLAVKADEEGYLDELLDHYTIETGRIIKVKLRSSKIPEIGDKFASFTAQKGTCGMIYR 803 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 EDMP+ G D++ + H + I Sbjct: 804 QEDMPFTAEGVVPDLI---------------INPHAFPSRMTIN---------------- 832 Query: 1142 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 ++ G F E + L L Sbjct: 833 -----------------------YILQMCYGLAACYTGKIYDATPFKRYNLTEELKELAL 869 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 + + +Y G TG++F + +G +L HLV +K+H+R +G +T QP+ G Sbjct: 870 ELKLETWETTMYCGLTGKKFSSKIFIGPCDYQRLRHLVTNKIHSRISGPIDNLTHQPVAG 929 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN-GRTKMYKNI------VDGNHQ 1314 ++++GG + GEME W ++GA+ L+E L SD K K I Sbjct: 930 RSRYGGIKVGEMEQWCKLSHGASAALKESLFDMSDKYTIPVCKTCKTISDDFEYCRKCDD 989 Query: 1315 MEPGM---PESFNVLLKEIRSLGINIELE 1340 +E M P + +L +E+ ++GI+++ E Sbjct: 990 IEIEMKNCPYTSKLLFQELMAIGIHVQFE 1018 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 42/377 (11%), Positives = 117/377 (31%), Gaps = 41/377 (10%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQ 83 + L + ++S+ +F+ D + ++ N +++ + + +P Sbjct: 2 LKRLTAHHIESYDRFLFFDIPAVVARDKIIQTT--------NFVIEFKNIQYNKPKITPL 53 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE----------IPLMTDN 133 E + + +TY+ + ++ ++ + ++ + P Sbjct: 54 EAKQKDLTYAISINYEIDFNGKSTILEIFSLPLMLRSKLCLTNNVAHQTTFELCPN-DPG 112 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 G F++ G ERV++ + V + + + + + + D K Sbjct: 113 GYFIVKGKERVLIPHIRPRYNVPMVKYEDGFYL---CEFRSASETGSSTLIQARTDGKIV 169 Query: 194 LFVRIDR-RRKLPATIILRALNYTTEQ--ILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 L + ++ +PA + + L + E+ +L +K + E + L G Sbjct: 170 LEFSLPYIKQFVPAGTVFKTLGISFEEAFLLCGLGQKNKHTLNCKSGYYEALSTILYGHY 229 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + + V V+ ++ L K + + D S + Sbjct: 230 -TGNKTVTDYVPVDVKCDNKESYVESLLKKE---------------IFNHLEDHSPFNVA 273 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 C ++ ++ + L +D + E L + + ++ Sbjct: 274 CHLGYMINRLAAVTAGEAALTDKDDLAYKRVDTSGTLIEFLFKGLFKQYVRLIKNSLEIL 333 Query: 371 RPGEPPTREAAESLFEN 387 + +P ++ N Sbjct: 334 KNPDPINIVKNVNVITN 350 >UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunaliella salina RepID=D0FY17_DUNSA Length = 916 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 125/260 (48%), Positives = 176/260 (67%), Gaps = 2/260 (0%) Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ++ L L +IN K ++A++EFFG+S LSQFMDQ NPL+E+THKRR+S++GPG Sbjct: 655 KKDISQQLKGLTSSSIINNKAFNSAIREFFGTSPLSQFMDQINPLAELTHKRRLSSMGPG 714 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 G+TR+ A +R +HPTHYGR+CPIETPEG N GL+NS++ YA+ N G LE+P+ KV Sbjct: 715 GVTRDTATLAIRGIHPTHYGRICPIETPEGKNTGLVNSMTTYARVNSSGILESPFYKVYK 774 Query: 597 GVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 G V ++YL+A +E +A A+ + G + ++ R + SR V Y+ Sbjct: 775 GQVQKNTGMYYLNAEQEEKIKLAAADLYVSPIGFLPKAMIPARIAETFTKISRSSVQYIG 834 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS Q++S+ ASLIPFLEHDDANRALMG+NMQRQAVP +R ++P+VGTG+E DSG Sbjct: 835 VSPLQMISIAASLIPFLEHDDANRALMGSNMQRQAVPLIRHERPIVGTGLEGRAVSDSGH 894 Query: 715 TAVAKRGGVVQYVDASRIVI 734 ++ G+V YV A +I++ Sbjct: 895 VIQSRYSGLVTYVSAKKIIV 914 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 83/454 (18%), Positives = 155/454 (34%), Gaps = 45/454 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 + +++Q SF + +E+ GL F PI + + + Y L P + Sbjct: 8 LSDFVTVQRQSFFELLEK------GLIEEFAKRNPITNGRKDYSFFFYPEYYILTRPEYK 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 E ++ +Y++ L V +++ + K I + VY+G IPLMT G F++NG Sbjct: 62 PHEAILKNKSYTSKLFVPVQITNKKH-------KQIVLKWVYIGNIPLMTKRGHFILNGA 114 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGK-----------------------VLYNARIIP 178 RVIV+Q+ RSPG+++ + + K + +I Sbjct: 115 ARVIVNQILRSPGIYYQQKIYENYEDNKGSKSNAQDDETGEGSSLQPVNTYKRFYCDLIC 174 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE--KVIFEIRDNK 236 RGSWL E D + N++ ++ + K+P L A+ + + IL + KV+ + NK Sbjct: 175 MRGSWLRIEMDKEKNIWAQMKKGPKIPIYWFLLAMGLSEKVILKSIMDPQKVLGNLERNK 234 Query: 237 LQMELVPERLRG-ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +L + + TA ++A+ + + + L D K Sbjct: 235 AVPKLSKKNKKDLTTARSAMQADETLKSTGEDKKNLEIKQDLIVADSLNESNSQTDKTTK 294 Query: 296 VVA-KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR-- 352 + ++ + + G L + + L++ + F+N +I E Sbjct: 295 LFWPEETREGTKGALTGFPHDLKNEGEENSLNKINEVNFVSEFSNKSVKNDFIEEDNEKA 354 Query: 353 -VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 + Y P + D S K + R Sbjct: 355 IKTNASTSSKKQNYPYLKNTPEAWQAIYTLLHSKTKISNVSKTKDKSDQKDTKGVSDIAR 414 Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 I L +I G + Sbjct: 415 SAIRADETLKSARTDKNQDSIIKETFGDTKFPGR 448 Score = 97.6 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 72/365 (19%), Positives = 133/365 (36%), Gaps = 24/365 (6%) Query: 141 TERVIVSQLHRSPGVFFDSDKGK-----THSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 +E+VI+ + V + ++ K + + K L AR L + K NL Sbjct: 212 SEKVILKSIMDPQKVLGNLERNKAVPKLSKKNKKDLTTARSAMQADETLKSTGEDKKNLE 271 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 ++ D L L N T++ LF+ + E + P L+ E + Sbjct: 272 IKQD----LIVADSLNESNSQTDKTTKLFWPEETREGTKGA--LTGFPHDLKNEGEENSL 325 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE--LICAA 313 +V + +E+D+ K I+ + K + + Sbjct: 326 NKINEVNFVSEFSNKSVKNDFIEEDNEKAIKTNASTSSKKQNYPYLKNTPEAWQAIYTLL 385 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE--IYRMMR 371 + + + ++K ++ ++ ETL+ T+ ++++ Sbjct: 386 HSKTKISNVSKTKDKSDQKDTKGVSDIARSAIRADETLKSARTDKNQDSIIKETFGDTKF 445 Query: 372 PGEPPTR---------EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 PG E N F + YDL GR+ FN+ L L+ Sbjct: 446 PGRLGLGPSSKGKNLTELGRQWLYNRFMNPRSYDLGKQGRIAFNKKLGLTIASHQLTLTG 505 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 D++ LI + G DDIDHL NRR+R+ GE+ + Q VGLVR+E+ ++ ++ Sbjct: 506 LDVLYATDYLIKVEKGIFNTDDIDHLKNRRVRTSGELIQIQIGVGLVRLEKFIRYNENML 565 Query: 483 DLDTL 487 + Sbjct: 566 EGKRK 570 >UniRef50_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8PJ53_COPC7 Length = 742 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 118/812 (14%), Positives = 246/812 (30%), Gaps = 177/812 (21%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQ------DPEGQYGLEAAFRSVFPIQSYSGNSEL 68 + D L+ QLDSF +F++ D L+ A + + E+ Sbjct: 35 WTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGQAGDMTRRYEI 94 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 ++ L P + G+V + QE + + Sbjct: 95 KFGQIYLSRPTVTEAD---------------------------GSVVPVFPQEARLRNL- 126 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 T + I +RV+V + + +P +W + E Sbjct: 127 --TYSAPLYIEMRKRVLVGREDPA------------------------VPGDITW-EAEH 159 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 + D +I K+P + IL ++ ++++ + Sbjct: 160 EDTDGDAAKI-WIGKVPIMLRSSFC------ILHELRDQDLYDLNECPYDSG-------- 204 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 F I + KV + + R T K P+ ++A A + ++ + Sbjct: 205 --GYFIINGSEKVLIAQERMATNHVYVF-----AKAQPSPINFLAEIRSAVERGGKTISQ 257 Query: 309 LICAANMELSLDLLAKLSQSGHKRIET-------LFTNDLDHGPYISETLRVDPTNDRLS 361 L + ++ I+ + I E + D + ++ Sbjct: 258 FQVKMFHRNQERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQM- 316 Query: 362 ALVEIYRMMRPGE-PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI------ 414 L + + G RE A N L R+++ + +L++E+ Sbjct: 317 -LEMLKPCIDDGFVIQDREVALDFIGNR---GTTTGLPRDRRIRYAQEILQKEMLPHISM 372 Query: 415 -EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG---------------- 457 EGS ++ +L+ + E+DD DH G +R+ G Sbjct: 373 AEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGLPSRQPVPYALPQAHQ 432 Query: 458 ---------EMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 E+ + + + + V+ + + I+ +K + Sbjct: 433 RCLSLLAEGELIQLHVGRIRIDLLQCVETH------KEFNLSLAVKHQTITNGLKYSLAT 486 Query: 509 SQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 SQ +++ S ++H RR + L RE + R +H TH+ Sbjct: 487 GNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT----PLGREGKIAKPRQLHNTHW 542 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 G VCP ETPEG GL+ +L++ A + G P + + + + + Sbjct: 543 GMVCPAETPEGQACGLVKNLALMACISV-GSYSAPVIEFLEEWGLESLEENAHSTTP-CT 600 Query: 616 IAQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 N + + V+ + R K + S V + ++ + + L Sbjct: 601 KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSV-VRDIRERELRLYTDAGRVCRPL 659 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 + + ++ R ++ + + G+V+ +DA Sbjct: 660 FIVENQQLVLQKKHVRW---LANSEND----------DGEEWKWENLIKSGIVELLDAEE 706 Query: 732 -----IVIKVNEDEMY-PGEAGIDIYNLTKYT 757 I + + E+ G++I Y Sbjct: 707 EETVMICMTPEDLEVSRRQSEGMEIQTHEDYD 738 >UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella terrestris RepID=B2X254_9CHLO Length = 808 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 126/274 (45%), Positives = 176/274 (64%), Gaps = 4/274 (1%) Query: 466 VGLVRVERAVKE--RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 G + ++ +E + L D INA+ ++ A++EFFG+S LSQF+DQ NPL+E Sbjct: 495 KGFDKEKKNFREAPEFLITRKKNLRISDFINARYVNGALREFFGTSPLSQFLDQINPLAE 554 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ITHKRR + LGPGG++ + A VR +HPTHYGR+CP+ETPEG N GL+N+L+ YA+ N Sbjct: 555 ITHKRRFTLLGPGGVSEDTATMAVRGIHPTHYGRICPVETPEGKNAGLVNTLTGYARVNS 614 Query: 584 YGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 G +ETP+ KV + + +LS +E V+A + ++ + G + + RS GE Sbjct: 615 DGLIETPFLKVFKSQIQKKKGFFFLSPEQEEKSVLATGDLSISKTGFLPKGFLPARSLGE 674 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 + S V +M VS Q++SV SL+PFLEHDDANRALMGANMQRQAVP R+++P+VG Sbjct: 675 FTKVSSKSVGFMSVSPIQLISVATSLVPFLEHDDANRALMGANMQRQAVPLARSEQPIVG 734 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK 735 TG E DSG AK GG V Y A+++V+ Sbjct: 735 TGTEAKAISDSGAAVRAKFGGFVCYASANKVVVC 768 >UniRef50_UPI0000E487B4 PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide B n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E487B4 Length = 830 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 85/574 (14%), Positives = 181/574 (31%), Gaps = 64/574 (11%) Query: 143 RVIVSQLHRSPGVFFD-SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R +V Q S F + + + + A +PY +L+ D + Sbjct: 53 RGLVRQHIDSFNYFINVEVFSMNFAPLQSTFPAEALPYL-QYLNIYVGSPDVEESFNITK 111 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET----------- 250 P LR + Y+ +D+ + + + N L + +P LR Sbjct: 112 PTSPHECRLRDMTYSAPITVDIEYTRGQQRVIRNNLPIGRMPIMLRSSNCVLTGKSPAEL 171 Query: 251 -----------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 F + KV + + + R I ++++ + V + ++ Sbjct: 172 AKLNECPLDPGGYFIVRGTEKVILIQEQLSKNRMIVEVDRKGIVSCNVTSS--THERKSR 229 Query: 300 DYIDESTGELICAANM-ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLR 352 + G+ N + ++ G + + + + E Sbjct: 230 TVVIVKKGKHYLKHNTFTEDIPIVVIFKAMGMESDQEIVQTIGTEESTMVSFASNLEECH 289 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 +L AL + +R + +S + L+ + ++FN Sbjct: 290 KIQVYTQLQALKYMGMKVRQRRMWGGGSKKSKVDEARELLATTILAHIPVVQFN------ 343 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 + +++++I+ + +VDD D+ GN+R+ G++ F + Sbjct: 344 -----FRAKSIYLALMVRRVIEAQGDAVKVDDRDYYGNKRLELAGQLIALLFEDLFKKFN 398 Query: 473 RAVKE----RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEIT 525 +K+ + + I+ + + S M++ ++ Sbjct: 399 SELKKYADQNIPRPRAAQFDIVKYMRQDQITNGLITAISTGNWSVKRFKMERAGVTQVLS 458 Query: 526 HKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 IS LG + R R + P+ +G +CP +TPEG GLI +L++ Sbjct: 459 RLSYISCLGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLIKNLALMTH 518 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEE--GNYVIAQANSNL----DEEGHFVEDLV 634 E P K+ + + +H +S E + + N N+ E + Sbjct: 519 ITTDME-EAPIVKLAFNLGVEPVHLMSGEELSMKDVYVVFLNGNILGVVREHKRLMRTFR 577 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 R G S F ++ S G + Sbjct: 578 LVRRAGYISEFVSICPNHAQRCVTIA-SDGGRVC 610 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 67/278 (24%), Positives = 101/278 (36%), Gaps = 70/278 (25%) Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 V S + Y + + ++NP G PSR +G I + + Sbjct: 609 VCSIVWK-----YFCHFSVPQ-IMNPHGFPSR---------------MTVGKLIEFLAGK 647 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 + +G F G K + Sbjct: 648 A---------------------------------------GVLEGKFHYGTAFGGDKVVD 668 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 I E L+ G+ L G TGE + G +Y KL H+V DKMHAR+ G +++ Sbjct: 669 ICEDLRKHGFNYLGKDFLTSGITGEPLTAYIYFGPVYYQKLKHMVLDKMHARAKGPRAVL 728 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRT------KM 1304 T+QP G+A+ GG R GEME L YGA+ L E L + SD DV G Sbjct: 729 TRQPTEGRARDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFQVDVCGDCGLIGHSGW 788 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +P + +L +E++S+ I L + Sbjct: 789 CPYCHCSQNISSLRIPYACKLLFQELQSMNIIPRLRLK 826 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 88/248 (35%), Gaps = 37/248 (14%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 K ++ + P L V L+ +DSF FI + A +S FP ++ L Sbjct: 37 KAVKDKWKLLPAFLKVRGLVRQHIDSFNYFINVEVFSMN--FAPLQSTFPAEALP---YL 91 Query: 69 QYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKL-----------------R 101 QY++ +G P EC++R +TYSAP+ V + R Sbjct: 92 QYLNIYVGSPDVEESFNITKPTSPHECRLRDMTYSAPITVDIEYTRGQQRVIRNNLPIGR 151 Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 + I R + + + E PL G F++ GTE+VI+ Q S Sbjct: 152 MPIMLRSSNCVLTGKSPAELAKLNECPL-DPGGYFIVRGTEKVILIQEQLSKNRMIVEVD 210 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQI 220 K S V + R S + +P +I +A+ + ++I Sbjct: 211 RKGIVSCNVTSSTH---ERKSRTVVIVKKGKHYLKHNTFTEDIPIVVIFKAMGMESDQEI 267 Query: 221 LDLFFEKV 228 + + Sbjct: 268 VQTIGTEE 275 >UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SF17_TRIAD Length = 617 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 171/316 (54%), Positives = 231/316 (73%), Gaps = 10/316 (3%) Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 TCINQ P V +G+ VE GD+LADG STD+GELALG+N+ VAFMPWNGYNFEDSIL+SER Sbjct: 302 GTCINQRPIVKVGQYVEAGDILADGASTDMGELALGKNILVAFMPWNGYNFEDSILLSER 361 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 +V++D +T++HI E V+RDT+LGPEEIT DIPNV E L+ LDE+GIV IGA+V GD Sbjct: 362 LVKDDIYTSVHINEYEIVARDTRLGPEEITRDIPNVNEENLTHLDETGIVNIGAQVKPGD 421 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 ILVGKVTPK E+ LTPEEKLLRAIFGEKA+DV++SSLRVP G G ++DV++FT+ GV+K Sbjct: 422 ILVGKVTPKTESPLTPEEKLLRAIFGEKAADVRNSSLRVPPGEKGVIVDVKIFTKRGVQK 481 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG----------VEAEKLDK 991 D+RA+ IE ++++ KD+ +E +I+E +F++++ +L ++ LD Sbjct: 482 DERAISIERNEIEKFSKDMEDEKRIIEDYVFNKVKVILFGKKVKDKSNKSITIDQNFLDD 541 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 L + L L D++ + +++L E YD + EK + K K+ GDDL GVLKI+K Sbjct: 542 LDNKQVWSLELDDKKSKEDIQKLEEFYDNYLKKLEKDYKHKVEKLQSGDDLPQGVLKIIK 601 Query: 1052 VYLAVKRRIQPGDKMA 1067 +Y+A K +IQPGDKMA Sbjct: 602 IYVANKLKIQPGDKMA 617 Score = 239 bits (608), Expect = 9e-61, Method: Composition-based stats. Identities = 133/290 (45%), Positives = 203/290 (70%), Gaps = 1/290 (0%) Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY-IAGKVVAKDYIDESTGELICAANME 316 ++ +KG R+T R ++ EK++ + E I K +AKD ++ +TGE++ + E Sbjct: 12 TKEIIFKKGIRVTPRILKDFEKNNTDRYYITTEDDIKRKFLAKDIVNLTTGEVLYESTQE 71 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 ++ +++ + I + N++D G +I +T+ +D D AL +IY+++RPGEP Sbjct: 72 VTQEIIDSVKALNINEIVIIDVNNVDSGSFIRDTIVLDKNKDEEQALADIYKVLRPGEPS 131 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 T E A+ LFE++FF ++YDLSAVGRMK N+ + + L+KDDII ++K L++++ Sbjct: 132 TPEVAKQLFESMFFDNEKYDLSAVGRMKINKKHDLDVPHTTTALTKDDIIVIIKHLLNLK 191 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 G G VDDID L NRR+RSVGE+ ENQFR+GLVR+++++ +R+S ++D +MP D++N+K Sbjct: 192 CGIGTVDDIDSLANRRVRSVGELVENQFRMGLVRMQKSIVDRMSSVEIDNVMPHDLVNSK 251 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 + + ++EFFG SQLSQFMDQ NPL+EITHKRR+SALGPGGLTRERAGFE Sbjct: 252 TLMSYLREFFGISQLSQFMDQTNPLAEITHKRRLSALGPGGLTRERAGFE 301 >UniRef50_P15352 DNA-directed RNA polymerase subunit B'' n=25 Tax=Euryarchaeota RepID=RPOB2_HALSA Length = 523 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 93/559 (16%), Positives = 210/559 (37%), Gaps = 70/559 (12%) Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ---EVYMG 125 + + + +Y+A L ++ V+ E+E E + D +++ V +G Sbjct: 8 ELSESYFSKERLAEHHFR----SYNAFLEHGMQDVVTEKERIETDIGDKEDEEPVWVELG 63 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 ++ +T +G+E ++ Q R + Y+A + Sbjct: 64 DVRAVTPRVR-EADGSEELLYPQEARLRNI---------------TYSAPVFMEMSIVRG 107 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 E + + L + ++P + N + F ++ + EI ++ Sbjct: 108 GEEEEERVLDTTETKVGRMPIMVGSDKCNISG------FSDEELIEIGEDPADPG----- 156 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 F I + +V + + + + + I+V + + + E Sbjct: 157 -----GYFIINGSERVLMTSEDLAPNKILAEYDSKYGDEIQVAKTFSQRRGYRALVLVER 211 Query: 306 TGELICA------ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 E + + + L+ L + I + D + ++ E L + Sbjct: 212 NREGLLEVSFPSVSGSISFVTLVRALGLESDEEIVHRVSEDPEIVKFMLENLEEADVQTQ 271 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+ ++ + + G+ + + + DRY L + E E + I Sbjct: 272 EEAIEDLGQRVASGQGKNYQ-----LKRANYVIDRYLLPHLHEDGV-------EEEETRI 319 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 + + + ++ G+ E DD DH N+R++ G++ ++ FR L ++ R VK +L Sbjct: 320 NKAYYLCRMAEACFELALGRREADDKDHYANKRLKVSGDLMKDLFRTALNKLARDVKYQL 379 Query: 480 SLGDLDT--LMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRI 530 ++ L ++ + ++ ++ + SQ +D+ + + ++H RR+ Sbjct: 380 ERANMRNRELTVNTVVRSDVLTERLEHPIATGNWVGGRSGVSQLVDRTDFMGVLSHLRRL 439 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 L+R + FE RD+H T +GR+CP ETPEGPN GL+ + + + ++ E Sbjct: 440 ----RSPLSRSQPHFEARDLHATQWGRICPSETPEGPNCGLVKNFAQAMELSQDVDDERD 495 Query: 591 YRKVTDGVVTDEIHYLSAI 609 ++ + + I +S Sbjct: 496 LKQELSSMGVEGIPGISME 514 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 56/401 (13%), Positives = 125/401 (31%), Gaps = 82/401 (20%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE------LQYVS 72 L S+ F+E G++ I++ G+ E ++ Sbjct: 11 ESYFSKERLAEHHFRSYNAFLEH------GMQDVVTEKERIETDIGDKEDEEPVWVELGD 64 Query: 73 YRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 R P QE ++R +TYSAP+ +++ +V E E + + + Sbjct: 65 VRAVTPRVREADGSEELLYPQEARLRNITYSAPVFMEMSIVRGGEEEEERVLDTTETK-- 122 Query: 123 YMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRSPGVFFD 158 +G +P+M + F+ING+ERV+++ +P Sbjct: 123 -VGRMPIMVGSDKCNISGFSDEELIEIGEDPADPGGYFIINGSERVLMTSEDLAPNKILA 181 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSW--LDFEFDPKDNLFVRI-DRRRKLPATIILRALNY 215 K ++ RG + E + + L V + ++RAL Sbjct: 182 EYDSK--YGDEIQVAKTFSQRRGYRALVLVERNREGLLEVSFPSVSGSISFVTLVRALGL 239 Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI---TAR 272 +++ + + ++ ++ + E L D++ + + G+R+ + Sbjct: 240 ESDEEIVH-------RVSEDPEIVKFMLENLEE----ADVQTQEEAIEDLGQRVASGQGK 288 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL---------- 322 + + + V + ++ V ++ + +C L Sbjct: 289 NYQLKRANYVIDRYLLP-HLHEDGVEEEETRINKAYYLCRMAEACFELALGRREADDKDH 347 Query: 323 ---AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 +L SG + T + L +R Sbjct: 348 YANKRLKVSGDLMKDLFRTALNKLARDVKYQLERANMRNRE 388 >UniRef50_Q4QA33 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QA33_LEIMA Length = 1616 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 101/510 (19%), Positives = 166/510 (32%), Gaps = 108/510 (21%) Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 + + P L + A+ A D +I+ R + Sbjct: 1157 YISRTLPMDYYGLDDVNLGVNAVIAILAYTGYDMD-------DAVIINSTAAQRGMLTAG 1209 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK----LDKLPRDRWL 998 +I K + KD L + R A L A G+ ++ LD DR Sbjct: 1210 VTVAKIVTASGKGSDKDDVFVFHNLLSTG-ERFTAELEANGLPPKRANASLDAFSFDRDH 1268 Query: 999 EL-GLTDEEKQNQLEQLAEQYD----ELKHEFEKKLEAKRRKITQGDD----------LA 1043 + GL D + E+ D + +E+ + K R +G+D + Sbjct: 1269 KYPGLRDNNDVYCCAKRVERVDPFTNKAVYEYTRHHATKWRHFDKGEDAWVQQVIPLVYS 1328 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY-DENGTPVDIVLNPLG 1102 V + + R GDK + RHG KG + D+P+ +G D+++NP Sbjct: 1329 GPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSHDLPFATASGITPDVIINPHA 1388 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 PSRM +G +LE GA + +D S Sbjct: 1389 FPSRMTVGMVLEIMTAKV-------------------------------GAIEGRFIDNS 1417 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 +S + I E L G+ L DG +GE+ + Sbjct: 1418 AWSTVDEQPRVA------------------ELIGEALVKAGYNRYGREHLIDGISGEEMK 1459 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV-----TQQPLGGKAQFGGQRFGEMEVWA 1277 V +G +L H+V DK AR+ T QP+ G+ + GG R GEME Sbjct: 1460 ADVFMGICGYQRLRHMVSDKWQARARTDAHTYRAVTKTGQPVKGRKRHGGVRVGEMERDG 1519 Query: 1278 LEAYGAAYTLQEMLTVKSDD----VNGRTK-----------------MYKNIVDG----- 1311 L ++G + + + L SD + R + G Sbjct: 1520 LLSHGISEVVVDRLLHVSDKTKAFICPRCGSLLSLYERHATEYGTWRTCRFCGAGADEST 1579 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + +P+ + E+ S+GI + L+ Sbjct: 1580 DSIAMVEIPQVLRLWAAELTSIGIRVVLKT 1609 Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 132/985 (13%), Positives = 261/985 (26%), Gaps = 174/985 (17%) Query: 169 KVLYNARIIPYRGSWLDF-EFD----PKDNLFVRIDRRRKLPATIILRALNY-TTEQILD 222 Y A + R + +D+ +D K+ +V P + + LD Sbjct: 436 STEYFALMRQLRVAPVDYDTYDYLVPSKEQFWVNFAS---FPEMVKGARCALRNVDARLD 492 Query: 223 LFFEKVIFEIRDNKLQMELVPERLR---GETASFDIEANGKVYVEKGRRITAR--HIRQL 277 F + M LR + + I + +V +G +A+ IR Sbjct: 493 HFRALEEQKEVGGYFIMNGGERILRALLMQRCNVPINIYREKFVTQGPHFSAKAVVIRCK 552 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 + G+V+ + A + L+ +S +R+ T+ Sbjct: 553 RPSGLTAQNYFYYTTQGEVI---FSFARKVVWHLPAPLLLNAMSTQSVSAVELQRLLTIG 609 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEI------------YRMMRPGEPPTREAAESLF 385 D +H + L+ I Y A+ Sbjct: 610 MPDGNHVARVEALLQHHRRKPYGDLRHFIDYITVLGRMYREYHQNSSTFHFLPLYAKGST 669 Query: 386 ENL-----FFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL-------------SKDDIID 427 F R+ L + L + +L D +I Sbjct: 670 CQHDAWYGMFMVRRHVLPHLNSCDVATPDLAPDATAQKLLAWLSPALLAELDRKFDAMIA 729 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG----- 482 + ++L +G E D + + +V ++ F V L R R RL+ Sbjct: 730 ITRQLYLFIDGAVEHQGNDVPAYQELFTVSQVLMGAFEVCLNRYMRGFVYRLARHLPAAL 789 Query: 483 --------------DLDTLMPQ---------------------DMINAKPISAAVKEFF- 506 D + M Q ++ I+ +E F Sbjct: 790 FRRILSLRTLLPPVDAEDTMRQVRQFAEFCGRHGGSDPLDQLARLLVTGNINLDREEDFY 849 Query: 507 --GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 564 +S + N R + G + EVR YG +C +++P Sbjct: 850 CPQTSGWVVMAEHLNFYRFFEQLR---CVHRGKTIADMRSSEVRKYPCEAYGFICMVQSP 906 Query: 565 EGPNIGLINSLSVYAQTNEYGF------LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 +G + G++N LSV ++ L RK GV + + V Sbjct: 907 DGEDCGVLNHLSVSTISSNSPDAAMTAQLREIVRKAVPGVRSRATLSTVVDQLCETVPVW 966 Query: 619 ANSNLDE---EGHFVEDLVTCRSKGESSLFSRDQVD-YMDVSTQQVVSVGASLIPFLEHD 674 L VE T R + +L S+ V + + + + Sbjct: 967 MEGELLGYLSPADAVEAAATLRERKALTLRSQVHVTGIVRRKDASPLHTLEVVYVAPKSK 1026 Query: 675 DANRALMGANMQRQAVPTLRADK-----------PLVGTGMERAVAVD------------ 711 D + + R P R + PLV G +D Sbjct: 1027 DPAGLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLVFIGTWEQSWLDIAAVPSDPLDAV 1086 Query: 712 ------------SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 +G ++ + + + + + + + +G + L R Sbjct: 1087 VQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAW--RK 1144 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 P + + D ++ LG N +A + + GY+ +D+++++ Sbjct: 1145 EAKLFRTYCPQRYISRTL-----PMDYYGL--DDVNLGVNAVIAILAYTGYDMDDAVIIN 1197 Query: 820 ERVVQEDRFTT--IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 Q T + + + + + ++ + GE ++L+ +G+ A Sbjct: 1198 STAAQRGMLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEANGLPPKRANA 1257 Query: 878 T-----------------GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 + D+ + E K + A+ + Sbjct: 1258 SLDAFSFDRDHKYPGLRDNNDVYC--CAKRVERVDPFTNKAVYEYTRHHATKWR----HF 1311 Query: 921 PNGVSGTVIDVQVFTRDGVEKDKR-ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 G V V G + + K S Q L R + Sbjct: 1312 DKGEDAWVQQVIPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSHDLP 1371 Query: 980 V-AGGVEAEKLDKLPRDRWLELGLT 1003 + P + + Sbjct: 1372 FATASGITPDVIINPHAFPSRMTVG 1396 >UniRef50_Q98S72 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S72_GUITH Length = 1109 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 112/940 (11%), Positives = 270/940 (28%), Gaps = 126/940 (13%) Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 F+ + + S + + + + +I+P + L + Sbjct: 31 LRQKYFITKNFKEYNSFKGLTSIDFYLSNPIYQFGTLI-----HKILPRQSKELKITYQG 85 Query: 191 KDNLFVRIDRRRK----------LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 + + + I K P I N + L Sbjct: 86 EFIISINIQNNEKNFNLVYKEGDFPIMIKSLKCNLFGLKPHQLTEIDEEEFENGGYFITN 145 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + +R I + + + V ++ Sbjct: 146 GTEKLIR-----LIIVPRRNYIFTSSKISNTLRGKNFSSFACSIRCVNRYGLSRTFHLHY 200 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + S N E ++ L +F + ++ + + Sbjct: 201 LTNGSILCRFIIRNQEFFFPVVIILKAIKDVSDTEIFKDITNNLHD-NNMFKEVAIKLIS 259 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 + I R +F + + G+ +L E Sbjct: 260 DSYNYIKSNFRDNYLEYIGK----LFKIFEKKIHLNNLETGKNLIENNLFIHV-ENDMNQ 314 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ER 478 +I +++KLI R G ++ D + + I G + + L +K E Sbjct: 315 KYLLLIYMIQKLIKSRMGLNLGENPDSIEFQEILLSGNLIGSILEKKLSANFDLIKIDEF 374 Query: 479 LSLGDLDTLMPQDMIN-AKPISAAVKEFFGSSQL--------------SQFMDQNNPLSE 523 +++ + + ++ S ++ S + + +++NN Sbjct: 375 MNIENSPIRKTKLIMKVFSNFSVGIRYLISSGNVPLIVNFEIPQTSGFNISIERNNYSRF 434 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ++ R ++ G R + P+++G +CPI TP+G G++N L++ + T+ Sbjct: 435 LSFFR---SIHRGKYFTTLKTTSGRKLMPSNWGYLCPIHTPDGSLCGILNHLTISSITSV 491 Query: 584 YGFLE-TPYRKVTDGVVT-----DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 +E + K T + S I +I + + F + + + Sbjct: 492 VNPIERINFLKYFKKHKTIFDRLSFKNRTSIILLDGKIIGFSTEIFLKW--FTDKIRCEK 549 Query: 638 S------KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR------------- 678 + + +++ ++ S A L+ + + N Sbjct: 550 VSDFGIFSNSIEIVCLKNENILNLFELKIYSSEARLLRPVRWNSFNSNFNKTNSKNESSF 609 Query: 679 -------ALMGANMQ-----RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQY 726 L+G+ Q Q++ T + + L+ T E + + G + Sbjct: 610 TYNFHTIELIGSLEQSYLNIHQSIFTKKGEICLLYTHYEID-----NLNIFSIVPGCTPF 664 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 D ++ + + +M GI +N+ + + + + P+ R + DG Sbjct: 665 FDMNQSPRNMYQCQMAKQSIGIPFHNI--WRKMDSKIYFLFSVQI----PICRNKINQDG 718 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 D G N V + ++ ++ ED+++ ++ ++ + Sbjct: 719 LGLDN--FINGFNAVVGVLSYSSFDMEDAVVFNKSSIERGLGMSYIYNTSNFDVN----- 771 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 I N + LD GI +G + DI++ KL+ Sbjct: 772 LSMIKNLNKNYSTLHYNCLD--GICNVGNALKKKDIIL------------LNNKLVNN-- 815 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI---EEMQLKQAKKDLSEE 963 V+++++ N +V V++ + K + I + + + K S Sbjct: 816 ----KLVRETTINYNNDEIASVDCVKILKNYSKIQSKHNVMIRLKSKRKPIEGDKFASRH 871 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 Q + + + + P + + Sbjct: 872 GQKGILSFKYEVENLPFSETGIIPDILFNPHGFPSRMTIG 911 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 88/476 (18%), Positives = 151/476 (31%), Gaps = 89/476 (18%) Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 L P ++ + L + V S + V F + +E+ Sbjct: 702 LFSVQIPICRNKINQDGLGLDNFINGFNAVVGVLSYSSFDMEDAVV-----FNKSSIERG 756 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 I + + L + L + G +K D + L Sbjct: 757 LGMSYIYNTSNFDVNLSMIKNLNKNYSTLHYNCLDGICNVGNALKKKDI--------ILL 808 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 ++ N+L + + + ++ KI + V + L KR+ Sbjct: 809 NNKLVNNKL----VRETTINYNNDEIASVDCVKILKNYSKIQSKHN-VMIRLKSKRKPIE 863 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK A RHG KG++S +E++P+ E G DI + H + Sbjct: 864 GDKFASRHGQKGILSFKYEVENLPFSETGIIPDI---------------LFNPHGFPSRM 908 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 IG I ++ + GA D S F Sbjct: 909 TIGMVIESL----------------SGKSGALNGNFNDSSPF------------------ 934 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 T + K E L+ G+ Y G G + V VG ++ +L H++ DK Sbjct: 935 -TSFLNCNKSYIFGEFLRENGFEFYGKEMFYSGFVGLPLQTDVFVGVIHYQRLKHMILDK 993 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD------ 1296 + + + +T+QP+ G+ G R GEME AL +G + L E + SD Sbjct: 994 FQVSNNSARNHLTRQPIKGRKLGGSIRLGEMERDALLGHGCIFLLHEKMQKSSDLHGVFI 1053 Query: 1297 -------------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 N +K I + +P L+ E+ L +N+ + Sbjct: 1054 ENTNSDIKDLFFNKYNYNSKFLSTIKSY--PRKIFVPYVLRYLICELSVLNLNLNI 1107 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 56/418 (13%), Positives = 121/418 (28%), Gaps = 65/418 (15%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP----- 78 + LL I L+S+ + I Q ++ S+ G + + + L P Sbjct: 9 LQSLLKIHLNSYNQIISQGFYFLRQKYFITKNFKEYNSFKGLTSIDF---YLSNPIYQFG 65 Query: 79 ----VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN- 133 ++ + +TY + + + E+ + G+ P+M + Sbjct: 66 TLIHKILPRQSKELKITYQGEFIISINIQNNEKNFNLVYKE---------GDFPIMIKSL 116 Query: 134 -----------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGK- 169 G F+ NGTE++I + F S K GK Sbjct: 117 KCNLFGLKPHQLTEIDEEEFENGGYFITNGTEKLIRLIIVPRRNYIFTSSKISNTLRGKN 176 Query: 170 -VLYNARIIPYRGSWL----DFEFDPKDNL---FVRIDRRRKLPATIILRAL-NYTTEQI 220 + I L + ++ F+ ++ P IIL+A+ + + +I Sbjct: 177 FSSFACSIRCVNRYGLSRTFHLHYLTNGSILCRFIIRNQEFFFPVVIILKAIKDVSDTEI 236 Query: 221 LDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD 280 + ++ ++L+ + ++F + + + EK Sbjct: 237 FKDITNNLHDNNMFKEVAIKLISDSYNYIKSNFRDNYLEYI---------GKLFKIFEKK 287 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 + + + ++ + + M L G F Sbjct: 288 IHLNNLETGKNLIENNLFIHVENDMNQKYLLLIYMIQKLIKSRMGLNLGENPDSIEFQEI 347 Query: 341 LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 L G I L + + ++ + M P + + F RY +S Sbjct: 348 LLSGNLIGSILEKKLSANFDLIKIDEF-MNIENSPIRKTKLIMKVFSNFSVGIRYLIS 404 >UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrella patens subsp. patens RepID=A9RIU1_PHYPA Length = 472 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 93/426 (21%), Positives = 159/426 (37%), Gaps = 58/426 (13%) Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 +G + + + + G ++ L + K + E+ + F V V G Sbjct: 93 NGVNVVIAILSYFGYNQEDSLLFNKSSIDKGLFSSIEYEVVEIIENKFMNEILVYVPDGD 152 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ-YDELKHEFEKKLEAKRRKITQGDDLA 1043 D + +G ++ +L + + K R + Sbjct: 153 ILR-----DNDGIILVGQQVKDGDTIAAKLVITEKKQSIEKIVLKSFVSRWVDKVTKHTS 207 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 KIV+V + + R G K RH KG+I I ED+ + ++ D+++NP + Sbjct: 208 VEGNKIVRVRILLYRFPIVGHKFTSRHSQKGIIGAILSQEDLSFTKDEIAPDLIINPHVI 267 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM +G +LE + + Y L ++ + Sbjct: 268 PSRMTMGHLLEM----------------------------VMYKIYVLDSNNAR------ 293 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 + ++ R+ I VF+ A + D+ + ++Y G T E Sbjct: 294 ---DPMLSSKPKSRESSCIDATVFNRAHRSF------EADIAKLCKEKMYCGATRLPIEA 344 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V G Y L H DK H+ S G +T+QP+ G+++ GG RFGEME L A+G Sbjct: 345 IVATGICYYHVLRHQARDKAHSISKGVIQSLTKQPVEGRSRKGGLRFGEMEKDYLIAHGV 404 Query: 1284 AYTLQEMLTVKSD--------DVNGRTKMYKNI-VDGNHQMEPGMPESFNVLLKEIRSLG 1334 A L E L SD D + +I +G + E +P SF +L +E+ Sbjct: 405 ASMLFEKLKNTSDLYEIWIYHDCSMICSSSPSINCNGRNTKEHRLPYSFKLLAQELSIAN 464 Query: 1335 INIELE 1340 I + L+ Sbjct: 465 IRVGLK 470 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 49/348 (14%), Positives = 105/348 (30%), Gaps = 46/348 (13%) Query: 697 KPLVGTGMERAVAVDSGVTA-----VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 + + T + + + + +V+ ++ V + M + ++ Sbjct: 2 QCFIATTHDSICNQHTHIEIHPSFMFELSASMTPFVNFNQSSRIVFQSAMSKQAMPLALH 61 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 +T ++ Q P + ++ ++ G N+ +A + + GYN Sbjct: 62 IMTNMISDSKILTYAQKP-------------ICTTTISNTIKVYNGVNVVIAILSYFGYN 108 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 EDS+L ++ + + F++I + + + EI +P+ D GI+ Sbjct: 109 QEDSLLFNKSSIDKGLFSSIEYEVVEIIENKF---MNEILVYVPDGDILR----DNDGII 161 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 +G +V GD + K+ E + + E+ +L++ V V Sbjct: 162 LVGQQVKDGDTIAAKL-VITEKKQSIEKIVLKSFVSRW------------------VDKV 202 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 T K R + K S Q G + A L Sbjct: 203 TKHTSVEGNKIVRVRILLYRFPIVGHKFTSRHSQKGIIGAILSQEDLSFTKDEIAPDLII 262 Query: 992 LPRDRWLELGLT--DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 P + + E ++ L K + I Sbjct: 263 NPHVIPSRMTMGHLLEMVMYKIYVLDSNNARDPMLSSKPKSRESSCID 310 >UniRef50_D2RIB2 RNA polymerase beta subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RIB2_ARCPR Length = 511 Score = 249 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 107/602 (17%), Positives = 211/602 (35%), Gaps = 119/602 (19%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 L+ Q+DS+ +F+++ GL+ EL + Sbjct: 10 AYFTHDRLVRHQIDSYNRFLDE------GLQRVI-------DEQRIIELDIPN------- 49 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 TY +K ++G+ P++ + + Sbjct: 50 -----------TY------------------------VKLGRAWVGK-PIVKEA-----D 68 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 G R+++ R + + + +Y + G L++E L Sbjct: 69 GIRRLLLPAEARLRNLTYAAP----------IYVEAQVVDEGKELEWETVEIGML----- 113 Query: 200 RRRKLPATIILRALNYTTEQILDLF--FEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 P + + N + I + F + D + ++ L E F I Sbjct: 114 -----PVMVKSKICNLHPDNIDEALKAFRRTDNIPDDYEKKLCLAGEDPLDPGGYFIING 168 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA----- 312 + V + + + E+ + EV + + E T I Sbjct: 169 TERALVTLEDLAPNKILLEKEEKYGEEFEVAKCFSQKAGYRALVVVERTRGNILEVTFPQ 228 Query: 313 -ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + L+ L K I + + + + ++ E L V + A+ I R + Sbjct: 229 LPKPIQFVVLMRALGVESDKEIVEMVSTNPEIMKFMLENLEVAEVETQEEAIDYIGRRVA 288 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 PG ++ + + D++ L +G + + + + Sbjct: 289 PG-----QSRDYRIQRANQVLDQHFLPHLG-----------TEPEARRAKAFFLARMAEM 332 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD--LDTLMP 489 + ++ G DD DH N+R++ G++ E FRV L+R+ + VK +L + Sbjct: 333 VFELHLGLRREDDKDHYANKRLKLAGDLIEEIFRVALLRLIKDVKYQLERAKARGRPMKM 392 Query: 490 QDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPGGLTRER 542 + A ++ + + SQ +D++N +S ++H RR+ + L+R + Sbjct: 393 TTAVRADVLTDRIMHPMATGNWVGGRTGVSQLIDRHNYMSILSHLRRVVS----PLSRSQ 448 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 FE RD+HPT +GR+CP ETPEGPN GL+ + + YA+ + G E +K + + Sbjct: 449 PHFEARDLHPTQWGRLCPNETPEGPNCGLVKNFAQYAEVSV-GCDEENVKKTLFSLGVEP 507 Query: 603 IH 604 I Sbjct: 508 IR 509 >UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=Pseudomonas mendocina RepID=Q5ZH39_PSEME Length = 382 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 172/228 (75%), Positives = 197/228 (86%) Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 +EG +++LV R E ++ + + V MDVS +QVVSV ASLIPFLEHDDANRALMG+ Sbjct: 154 RQEGQLIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGS 213 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 NMQRQAVPTLRADKPLVGTGMER VA DSGV VA+RGGV+ VDASRIV++VN+DE+ Sbjct: 214 NMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVNDDEVET 273 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 GEAG+DIYNLTKYTRSNQNTCINQ P VS G+ V RGD++ADGPSTD+GELALGQNMRVA Sbjct: 274 GEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDQVSRGDIMADGPSTDMGELALGQNMRVA 333 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 FMPWNG+NFEDSI +SERVVQEDRFTTIHIQEL CV+RDTKLGPEEI+ Sbjct: 334 FMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEIS 381 >UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F81 Length = 309 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 136/308 (44%), Positives = 202/308 (65%), Gaps = 9/308 (2%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQK---FIEQDPEGQYGLEAAFRSVF 57 M S+TEKK IRK FGK + L +P L+ +Q +S+++ F + E G + F+S+F Sbjct: 1 MQLSFTEKKNIRKSFGKLKESLSIPNLIEVQKNSYKELTEFNTEVTELTKGFDRVFKSIF 60 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIY--EREAPEGTVK 115 PI+ + + L+YVSYRL +P FDV+EC RG+TYS+ L+ LRLV+Y ++E + Sbjct: 61 PIEDLNDKATLEYVSYRLEKPKFDVEECIARGLTYSSALKCTLRLVVYEIDQENNTKDIL 120 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 KEQEVYMGE+P+MT++GTF+ NG +RV+V+Q+HRSPGVFFD DKGKTH+SGK+L+N R Sbjct: 121 SAKEQEVYMGEVPMMTNSGTFITNGVQRVVVNQMHRSPGVFFDHDKGKTHASGKLLFNCR 180 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV--IFEIR 233 +IP RGSWLDFE+D KD L+ +IDR++K+ ++ +L AL YT +I+D F+E F+ + Sbjct: 181 VIPNRGSWLDFEYDVKDFLYFKIDRKKKIFSSTLLLALGYTKSEIVDEFYESEQYNFDPK 240 Query: 234 DNKLQMELVPERLRGETAS--FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 K + + PE + + S G+V ++ G +I ++L D +K I V E Sbjct: 241 TEKWKTKFNPENYKAKNFSEEVIDAKTGEVVIKLGDKINFLSAKKLANDGLKDILVSRES 300 Query: 292 IAGKVVAK 299 + GK + Sbjct: 301 LFGKFCTE 308 >UniRef50_A9TCU8 Predicted protein n=6 Tax=Physcomitrella patens subsp. patens RepID=A9TCU8_PHYPA Length = 689 Score = 246 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 91/681 (13%), Positives = 200/681 (29%), Gaps = 92/681 (13%) Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + + V+ + ++ +K + I Y + + + C Sbjct: 43 YIVNLIKNITVDNNKIFNNVYVSSNQKTYQECINTLSTYECSIIADDRVVLTIPIPIGCC 102 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR---- 368 + ++ + Y++ + + + + + Sbjct: 103 YKPLEEASAIRGSFVIEGRKNVLMCQERNYTFRYLARKEKCELQLSKCHCEIYMVNGVLK 162 Query: 369 -MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL------- 420 + A + S R LS K LL E + L Sbjct: 163 VSLSHNNLVNIFAVMKVLRKTIASAKREILSWTNHPKEVSRLLLESQLDATTLDSNPTCS 222 Query: 421 ------------SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 + ++ + I+ + DD D L + + + ++ Sbjct: 223 TERILATLDDDKKVKMLSLMICRFIETILSLRQEDDRDCLSFKCVHTPADIVRRCIE--- 279 Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMD 516 R+ + ++++ + +N IS ++ F + SQ + Sbjct: 280 KRINKLNQQKIRSNSKQKAVIVSALNR--ISKDIQSNFKTGIWEGYTQGDNKRTISQVLS 337 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + L ++H RR+ +ERA +R +HPT G +CP ETPEGP++G + LS Sbjct: 338 SKSTLDSLSHVRRVEI-----SPKERASAIMRQIHPTQLGYICPCETPEGPDVGAVKYLS 392 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 Y V V + + L + ++ + ++ V Sbjct: 393 STCTITPY---------VDSDDVLNHLGVLPQGNDALFINGLFVTRTSKDNVLRSIKVYK 443 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN---------MQR 687 R S Y + + L A + +N Sbjct: 444 RKGEAFMFVSAY---YSSDKEIHIQTTRGRYSRPLLICTNGSAPVCSNTTVDNIYKANTL 500 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTA-----VAKRGGVVQYVDASRIVIKVNEDEMY 742 + + + + T + + V + Y + ++ V + M Sbjct: 501 EMIDATEQMQCFIATTHDSICNQHTHVEIHPSFMFGLSASMTPYANFNQSSRIVFQSAMN 560 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 + ++ + ++ Q P + ++ + G N+ + Sbjct: 561 KQAMPLALHIMISMVSDSKILTYAQKPICA-------------TTISNTIKEYNGVNVVI 607 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 A + ++GYN EDS+L ++ + F++I + + + D + Sbjct: 608 AVLSYSGYNQEDSLLFNKSSIDRGLFSSIKYEVVEIIENKFMNETLVYIPDGDILR---- 663 Query: 863 SKLDESGIVYIGAEVTGGDIL 883 D GIV IG +V G L Sbjct: 664 ---DNDGIVLIGQKVKDGLTL 681 >UniRef50_D2EG08 RNA polymerase Rpb2 domain 6 n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG08_9EURY Length = 600 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 112/751 (14%), Positives = 219/751 (29%), Gaps = 186/751 (24%) Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 +V + D+ ++DL+ R +G+ +V+ Sbjct: 5 FVNGVLSGATDDPNRLIKDLIEDRREGKI----PKEVNVRFRK----------------- 43 Query: 674 DDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 D + ++ ++ R ++ KPLV + ++ G ++Y+DA Sbjct: 44 -DTDSVMINSDSGRLLRALIVVKNGKPLVTKEDVQLLSEGHVTWQDLIDKGKIEYLDADE 102 Query: 732 IVIKVN---EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 + E+E+ P ++I L+ + Sbjct: 103 EELAYTALTEEELTPSHTHLEITPLSVF-------------------------------- 130 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 G + +P+ ++ + + + VQ+ ++ R Sbjct: 131 --------GTQA--SLLPFINHSNAHRNVTAVKSVQQGV--GVYSTNYLI--RHDNESMI 176 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 I P V + + ++ A+ Sbjct: 177 AIDQQFPIVKTEMYEN-------------------------ENFKSHLSGQNIVVAVLSY 211 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL----EIEEMQLKQAKKDLSEEL 964 ++ D+ + + V ++ F VE K I A + Sbjct: 212 LGYNMDDAIIINKSSVERGLLRAMFFRPYKVEDLKYVGGQSDLITIPDKDVAGYRSEDSY 271 Query: 965 QILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE 1024 + L+ + I + + G V ++ PR ++ + + E Sbjct: 272 KYLDEDAIAAINSHVNDGDVLIGRISP-PRFVSSIDKFRLGVQKQVESSIECRTGESGIV 330 Query: 1025 FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 + K V + + R ++ GD R G KGV Sbjct: 331 ENVFV-----------TSTSEGNKYVSLKIRQDRPVEIGDIFGPRSGQKGV--------- 370 Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 +G +L QE Sbjct: 371 ------------------------VGMLL---------------------NQEDMPFTYS 385 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 + + +S E++ G + F G E +++ L Sbjct: 386 GIVPDLIFSPYSIPSRMSMSYLLELIGGKVGALGGRHVDGTSFTGETEESLRQELMKYGF 445 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 +G +Y+G TGE+ + + VG M ++L H V+ K+ R+ G L+ +QP GK++ Sbjct: 446 RENGVETMYNGITGEEMKVRIFVGDMTYIRLKHFVEYKIQWRARGPIQLLNRQPTEGKSK 505 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME-------- 1316 GG R GEME AYG A L+E SD V +V + + Sbjct: 506 RGGLRLGEMEKDCFVAYGTALALKERF--DSDKVTIPVCSKCGMVAVYNVKKKTGYCPID 563 Query: 1317 --------PGMPESFNVLLKEIRSLGINIEL 1339 + SF +LL E++S+GI ++ Sbjct: 564 GEDAQIKLIEVSASFKILLDELKSVGIYPKM 594 >UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax=Plasmodium RepID=RPOB_PLAFA Length = 1024 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 131/830 (15%), Positives = 290/830 (34%), Gaps = 22/830 (2%) Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +++ K I L E I +L + + N + + + T Sbjct: 2 IYIVNPILVKNNYIISNLYLLLIQEIIYNLRYYILFLNNNINVKFNFIYYKIIILLTNIN 61 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 + + +I + + + +I + I + Sbjct: 62 INSIDTIQNINNLLKIILTLKLNFININKIIKFNILIFILPFIYNNIIILNGLYKTCIQL 121 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + + + K + I L + + ++ Sbjct: 122 FKKNNKIFIIKFKNNNKNIIYVYIYISLGLRIIFKISKLNIDCYFNNFKFNFLILLLYLN 181 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVG-----RMKFNRSLLREEIEGSGILSKDDIIDV 428 + N ++ + + N + + + I++ Sbjct: 182 NIYINKNISLFIYNNIINKKILIYNYIKFIYSKYNNINNIISLKLFIIKLNKFNNIYINL 241 Query: 429 MKKLIDIRNGKGEVDD--IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT 486 + L I+ D I+++ N++ S+ + + + L + + L++ Sbjct: 242 LNILFSIKLNFSYYSDFYINNIYNKKFYSIIDNLLIKSKKYLKIFKYQL---LNINRNIY 298 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 ++N K + E + L Q+ DQ N LSEI K +I+ + G ++ + Sbjct: 299 NNITLLLNNKKYINIILENININPLVQYSDQVNNLSEINQKFKINMITTGLNSKFILNND 358 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 +R++ G + I T EG GL+N L+ N Y+ + ++ L Sbjct: 359 LRELPRNILGYISLINTNEGLTCGLVNYLTTNIFLNLKYLFVIYYKHIFYNRYNFKL-LL 417 Query: 607 SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGAS 666 + + Y I+ N L + +F + + +K + + Q + + + ++S + Sbjct: 418 NIFNKNFYNISFNNIYLKKNINFNKTTILTINKNTFKICNITQ-NIIYIPFNYLLSFIEN 476 Query: 667 LIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQY 726 LIPF+ ++D+ R LM M Q VP + + + T + ++ + G+V Y Sbjct: 477 LIPFIHYNDSIRNLMSIKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIISYQEGIVIY 536 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 V +I+I+ +++ + IY L Y + NQN + P V +GE V G +LA Sbjct: 537 VSCIKIIIR----DLFNRQI---IYYLNNYKKINQNILLIYKPIVWVGEKVNIGQILAIN 589 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 + E +LG N+ V + + GY +ED+I++S +++ + +T++H+ Sbjct: 590 SNLLNSEYSLGNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYEISLNIINNI 649 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET-QLTPEEKLLRAI 905 PE + ++ + + LD+ GI+ G + +IL+ K+ ++ + Sbjct: 650 PEICSINLSKMYYKNIKHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINFL 709 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA--KKDLSEE 963 FG K K+ + G VI +++ K ++ + ++ K + Sbjct: 710 FGSKLRIFKNKPIISTIHDIGRVIKIEILPNHLYNKTEKNNIYLKFRIYIGIQKYLQLGD 769 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ 1013 G I + + P + + Q+ + Sbjct: 770 KICNRHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIGQIFE 819 Score = 207 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 110/538 (20%), Positives = 207/538 (38%), Gaps = 53/538 (9%) Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 YNF + ++ ++ I++ + + RD + + L Sbjct: 512 TNYNFILNKYLNHLIISYQEGIVIYVSCIKIIIRDLFNRQIIYYLNNYKKINQNI-LLIY 570 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 IV++G +V G IL + ++ + LL + +D+ + + Sbjct: 571 KPIVWVGEKVNIGQIL-AINSNLLNSEYSLGNNLLVGYGSYLGYEYEDAIIISRKILYNN 629 Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + + + E + K + ++ L+ + ++A + Sbjct: 630 LYTSLHLNIYEISLNIINNIPEICSI-NLSKMYYKNIKHLDKYGIIKEGTYILANNILIS 688 Query: 988 KLDKLPRDR-------WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 KL +P + + + + + + ++ + ++ Sbjct: 689 KLMFMPFIFNNKSLINIINFLFGSKLRIFKNKPIISTIHDIGRVIKIEILP---NHLYNK 745 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 + ++Y+ +++ +Q GDK+ RHG+KG+IS I+ I D+PY N DI ++ Sbjct: 746 TEKNNIYLKFRIYIGIQKYLQLGDKICNRHGHKGIISYISEINDIPYLNNKIQPDIFISA 805 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 + +PSR+NIGQI E G+ + + + + I Y + ++ Sbjct: 806 ISIPSRINIGQIFEGIYGLNSLYLNTRYIISNNLNKNYYNNYNHIFNYYKYNYNNNFNIN 865 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + + L + TG Sbjct: 866 SKMSYN----------------------------------------YNKYYLKNPFTGNM 885 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + + +Y KL H++ DK R G YS +TQQP+ G + GGQRFGEMEVWALEA Sbjct: 886 INNSICLNNIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVWALEA 945 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 +GA+Y +E T KSDD+ R + + + + E+F ++LKE++SL INIE Sbjct: 946 FGASYLFKEFFTYKSDDIKSRKILKNYLFNNYKIKNTFISETFKLILKELQSLAINIE 1003 >UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomonas moewusii RepID=B2X2B8_CHLMO Length = 795 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 107/508 (21%), Positives = 195/508 (38%), Gaps = 77/508 (15%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRL 75 V +P L IQ SF +E+ GL F PI S + E+ + Y+L Sbjct: 2 LNSVYYLPDFLEIQRQSFFTLLEK------GLIDEFSKRNPITSKKKDVEVYFYPEYYKL 55 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 P + ++ +R +Y++ L + +++ + I+ + Y+G +PLMT G Sbjct: 56 TLPTYSPRQAILRCKSYTSKLYMPVQITFKK-------TNTIRLKWAYIGNLPLMTKRGH 108 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSS--------GKVLYNARIIPYRGSWLDFE 187 F++NG R+IV+Q+ RSPG+++ + + Y A +I RG+WL E Sbjct: 109 FILNGAPRIIVNQIIRSPGIYYQEKLYERFTDKLSDKPNVTYKRYYADLICLRGTWLRLE 168 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 D +++ + + K+P L + + IL+ E P+R+ Sbjct: 169 IDRDKDIWAQTKKGPKIPIYWYLIGMGLSEHIILNSILE----------------PQRIL 212 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 A F ++ K R + + +E+ + + Sbjct: 213 QNLAPFTLDRKS---TRKKRNDYSYVKNPPDAWKEIYLELSRSPKSVETSTS-------- 261 Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 + K T +++ A + Sbjct: 262 -------------------ATTSKDNSLYSKGSTTKDESPRRT-------NKVDARNALT 295 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 + + E N F + YDLS GR FNR L + E L+ D++ Sbjct: 296 SKKKSLQKEASEQGRKWLFNKFMNPRAYDLSRQGRAAFNRKLGLKIDENQLTLTAQDLLS 355 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD-T 486 LI + G +DDIDHL NRR+R+ GE+ + Q + +VR+E+ ++E+++ ++ + Sbjct: 356 ATDYLIKVEKGLKPIDDIDHLKNRRVRTSGELIQIQIGIAVVRLEKTIREKINKTEMQFS 415 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQF 514 D IS+ K+ + +L Q Sbjct: 416 FSLGDAPRTSRISSNFKKDSSTQKLKQL 443 >UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax=Theileria parva RepID=RPOB_THEPA Length = 1005 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 120/820 (14%), Positives = 269/820 (32%), Gaps = 45/820 (5%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 + + + + + ++ ++ L E+ K Sbjct: 13 YINYFVNNIYNSLSRNINSKINKYYNYYKKSKIFKNIKFYFNLLTFESNYCCDSGQNKYL 72 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 + + +K + +I ++ I++S ++ N L L +L Sbjct: 73 YD----GYNSYYFINIPLQIKFNNLKSRFINYNIINIPKINQSGDIIL---NGYLRLPIL 125 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAE 382 + + + I + + V I + + Sbjct: 126 YLQLATNNISYIFNEKITRTYFIKIKNNIYLYIYLYDDFITVYINSYKIKNDLFSMYNNV 185 Query: 383 SLFENLFFSEDRYDLSAVGRMKFNRSLL------REEIEGSGILSKDDIIDVMKKLIDIR 436 S ++ V +K N DI+ ++ K +++ Sbjct: 186 SFKNKYINFSKIDNVIYVMNLKNNNIKYHIFDKTININNFVNNTMFMDILSIVNKFLNLN 245 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 K + ++L N+ SV + + ++V D L+ + I Sbjct: 246 LKKKFIQSSNNLINKSTNSV-------LKTIFRQFTKSVTIFDIEKYCDKLLYKKKIFRS 298 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT--RERAGFEVRDVHPTH 554 KE + + + DQ N LS +T+K +I+ G + + + +R + + Sbjct: 299 FNIVLFKEHLLVNPVIHYTDQLNVLSYLTNKFKINIFGYSNSSNDKFKVSTNLRKIQSDY 358 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 G + + TP+G GLI+ L+ +++ + + + + Y Sbjct: 359 IGFINIVNTPDGDTCGLISKLANNTILDKFKL----KLINCNNEYFENFTKIDITSKNLY 414 Query: 615 VIAQAN-SNLDEEGHFVEDLVTCRSKGESSLFSRDQ-VDYMDVSTQQVVSVGASLIPFLE 672 + N N+ + F + E L + D+ +++ +S+ +IPFL Sbjct: 415 NMTSNNFINIKKNSTFKVKQIEVFKNNEFKLINFDKNKTNKNLNVFNTLSITELIIPFLF 474 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 ++D R LMG+ M QA+P + + P V T + + G++ V+ +I Sbjct: 475 NNDPCRGLMGSKMHTQALPLIYNEHPYVMTKYNHMNGLLFNKCITSLCEGIIVSVNNYKI 534 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 ++ +++ Y L + + N+ ++ P V +GE + G +LA Sbjct: 535 IVMDDKNRYLH-------YYLYPFNVLDYNSFVSYKPIVWVGEKINIGKILALPSDLKHS 587 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT- 851 E LG N + + +NGY ED+I++++ ++ ED T+I KL E+T Sbjct: 588 EFTLGVNNLLNYSFYNGYEHEDAIVINKNLIIEDILTSISFDVYEEYLSINKLDYVELTL 647 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 + ++E G+ + GDIL K+ + + + + ++ Sbjct: 648 RHLLEYNRYNRYLINEVGVSSNQDYMLFGDILSTKIRYELSLSKNKKFFKVFKLIFKENK 707 Query: 912 D--VKDSSLRVPNGVSGTVIDVQVFTRD-------GVEKDKRALEIEEMQLKQAKKDLSE 962 V L + G G +I ++ + + + + + Sbjct: 708 KLIVYTKPLTIKRGGEGRLIKYEILGYSKFRQLDAMYPEINVSYLTLRFFIFKIDRINIG 767 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + G + ++ + P +G Sbjct: 768 DKLCGRHGNKGVVSKIVDNIDLPYTFRGLCPYSITSPIGA 807 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 115/567 (20%), Positives = 206/567 (36%), Gaps = 67/567 (11%) Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 G L L N M YN + +L ++ + + + + D K Sbjct: 484 GSKMHTQALPLIYNEHPYVMT--KYNHMNGLLFNKCITSLCEGIIVSVNNYKIIVMDDKN 541 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 NV + S + IV++G ++ G IL K ++ T L Sbjct: 542 RYLHYYLYPFNVLDYN-SFVSYKPIVWVGEKINIGKILALPSDLKH-SEFTLGVNNLLNY 599 Query: 906 FGEKASDVKDSSLRVPN-GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL 964 + +D+ + N + + + + + +E + + Sbjct: 600 SFYNGYEHEDAIVINKNLIIEDILTSISFDVYEEYLSINKLDYVELTLRHLLEYNRYNRY 659 Query: 965 QILEAGLFSRIRAVLVAGGVEAEK-------LDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 I E G+ S +L + + +K + + +++ + L + Sbjct: 660 LINEVGVSSNQDYMLFGDILSTKIRYELSLSKNKKFFKVFKLIFKENKKLIVYTKPLTIK 719 Query: 1018 YDELKHEFEKKLE--AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 + ++ +K R++ ++ ++ RI GDK+ GRHGNKGV Sbjct: 720 RGGEGRLIKYEILGYSKFRQLDAMYPEINVSYLTLRFFIFKIDRINIGDKLCGRHGNKGV 779 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 +SKI D+PY G + +P+G +R+N+GQ LE G +I A + Sbjct: 780 VSKIVDNIDLPYTFRGLCPYSITSPIGALARINLGQFLEGSCGYFGLNFNCRIKAPINLY 839 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 +++ ++ Sbjct: 840 NYHLYSNMYLKNIFNSLNVYNNSY------------------------------------ 863 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 + S + L D +TG Q + + Y LKL H K R+ G YS +T Sbjct: 864 --------INFSIEKYLRDFKTGYQLKNFNLMLMPYFLKLMHTSKSKFQYRTVGKYSSLT 915 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQM 1315 QQP+ GK G Q+FGEMEVWALE++G+AYT++E+ +K++ + +K Sbjct: 916 QQPVKGKRVNGSQKFGEMEVWALESHGSAYTIRELGYIKTNVKYFKKFEHKGYKGS---- 971 Query: 1316 EPGMPESFNVLLKEIRSLGINIELEDE 1342 E+F VL E++++ INI D Sbjct: 972 -----ETFKVLTLELKNVLININRVDN 993 >UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=Pseudomonas aeruginosa RepID=Q5ZH00_PSEAE Length = 364 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 130/177 (73%), Positives = 155/177 (87%) Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 + LMPQD+INAKP++AA+KEFFGSSQLSQFMDQNNPLSEITHKRR+SALGPGGLTRERAG Sbjct: 1 EGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAG 60 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 FEVRDVHPTHYGRVCPIETPEGPNIGLINSL+ YA+TN+YGFLE+PYR V D +VTDEI Sbjct: 61 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVKDSLVTDEIV 120 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 +LSAIEE ++VIAQA++ L+E+G V++LV R E ++ + + V MDVS +QVV Sbjct: 121 FLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQVV 177 >UniRef50_Q8TXI6 DNA-directed RNA polymerase second-largest subunit, the N-terminal part n=1 Tax=Methanopyrus kandleri RepID=Q8TXI6_METKA Length = 525 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 80/468 (17%), Positives = 173/468 (36%), Gaps = 51/468 (10%) Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 YR + E ++ RR+ P LR + Y+ ++ + E+ + + Sbjct: 63 SYRIEFERIEVGEPSSIEPDGARRKIYPMEARLRNMLYSAPLYAEIVMYEDGEEVERDNV 122 Query: 238 QMELVPERLRGE----------------------TASFDIEANGKVYVEKGRRITAR-HI 274 + +P +R + F I + +V + R Sbjct: 123 YVGELPVMVRSKVCNTYGLSEEELIEVGEDPKDPGGYFIINGSERVLMSLEDIAPNRRVN 182 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAK--DYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 ++ + V Y G+ D ID +I + ++ L G Sbjct: 183 EKIRERGVLDEVRSRVYSRGERYRGPVDVIDRKGRLVIDMPAVYRKFPVVILLRALGLTE 242 Query: 333 IETLFTNDLDHGPYISET---LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF 389 E + + ++E L + + AL I R+ RP E+ E + Sbjct: 243 EEIMEGVGPEFATIMAEQMRVLVKEEIGSQEDALEYIGRLSRP-----DESREERIKRGK 297 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVD---DID 446 +Y L + + E+++ D+++ +++++++++ + +V D D Sbjct: 298 EVLAKYFLPHIAEVD--DLDDDEKLKEVFRKKADEVLKMVREVLELKYRRVKVKSVRDRD 355 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKE 504 H N+RI+ G++ + ++ R ++ + + ++ ++ ++ Sbjct: 356 HYANKRIKLAGDLLYEAYEYAFQQLAREMRYQFERAYSRGREPTIRYIVRPDKVTDHIRS 415 Query: 505 FFGSSQL-----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 + SQ +++ +S ++H RRI A G+ + E R +HPT Sbjct: 416 CMSTGTWRTGHYRPRTGVSQILERYTWMSTMSHLRRIRAATELGVGKWSIPKEARYLHPT 475 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 H GR+CP ETPEG N G I +L++YA+ E ++ + + + Sbjct: 476 HMGRLCPNETPEGANCGAIKNLALYAEVVHKDADEDEVIEILEEIGLE 523 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 62/415 (14%), Positives = 140/415 (33%), Gaps = 64/415 (15%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG--NSEL 68 +R++ V P L++ S+ I++ GL+ + PI+ + + Sbjct: 14 LRRNEELLGDVKTHP-LIAHHFLSYHWLIDE------GLQQLIEQMEPIEPEVEGASYRI 66 Query: 69 QYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 ++ +GEP E ++R + YSAPL ++ + ++++ Sbjct: 67 EFERIEVGEPSSIEPDGARRKIYPMEARLRNMLYSAPLYAEIVM--------YEDGEEVE 118 Query: 119 EQEVYMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRSPG 154 VY+GE+P+M + F+ING+ERV++S +P Sbjct: 119 RDNVYVGELPVMVRSKVCNTYGLSEEELIEVGEDPKDPGGYFIINGSERVLMSLEDIAPN 178 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRAL 213 + + +V R D K L + + RK P I+LRAL Sbjct: 179 RRVNEKIRERGVLDEVRSRVYSRGERYRGPVDVIDRKGRLVIDMPAVYRKFPVVILLRAL 238 Query: 214 NYTTEQILDLFFEKVIFEIRDN-----KLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 T E+I++ + + + K ++ + L + + + +++G+ Sbjct: 239 GLTEEEIMEGVGPEFATIMAEQMRVLVKEEIGSQEDALEYIGRLSRPDESREERIKRGKE 298 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVA-------KDYIDESTGELICAANMELSLDL 321 + A++ + L + + A ++ ++ + + + Sbjct: 299 VLAKYFLPHIAEVDDLDDDEKLKEVFRKKADEVLKMVREVLELKYRRVKVKSVRDRDHYA 358 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 ++ +G E + + R + I R + + Sbjct: 359 NKRIKLAGDLLYEAYEYAFQQLAREMRYQFERAYSRGREPTIRYIVRPDKVTDHI 413 >UniRef50_P33811 DNA-directed RNA polymerase 132 kDa polypeptide n=71 Tax=root RepID=RPO2_VARV Length = 1164 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 99/483 (20%), Positives = 169/483 (34%), Gaps = 87/483 (18%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK---DKR 944 P ++ K+ FG+ + S + N G +I Q R G++ K Sbjct: 720 RPIVISKALETSKIAANCFGQHV-TIALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKH 778 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 +EI ++D S LE+ R+ A L +G A + T Sbjct: 779 QVEIPLENFNNKERDRSNAYSKLESNGLVRLNAFLESGDAMARNISSR----------TL 828 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 E+ + Q++ E + K + + +L V V+V +RR GD Sbjct: 829 EDDFARDNQISFDVSEKYTDMYKSRVERVQV-----ELTDKV--KVRVLTMKERRPILGD 881 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA---- 1120 K R KG ++ I ++PYDENG D+++N + SR I ++E L A Sbjct: 882 KFTTRTSQKGTVAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAK 941 Query: 1121 ---AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 KG + + + +F ++ Y+ Sbjct: 942 PYNNKGENRPVCFPSSNETSIDTYMQFAKQCYEHLNPK---------------------- 979 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 E E+ + + + LYD T + + V G +Y L+L H Sbjct: 980 ------------LTEKELSDKI-------FCEKILYDPETDKPYASKVFFGPIYYLRLRH 1020 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 L DK R G + + +Q G+ + GG +FGEME L A+GAA T+ E+L +D Sbjct: 1021 LTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEED 1080 Query: 1298 VNG------------------RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + V L ++ + G+ ++L Sbjct: 1081 YQDVYICENCGDIAAQIKSINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKL 1140 Query: 1340 EDE 1342 + E Sbjct: 1141 DFE 1143 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 123/907 (13%), Positives = 262/907 (28%), Gaps = 80/907 (8%) Query: 144 VIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK 203 V L + Y+ I +G D N+F + + Sbjct: 52 VKRPLLSFKNNTERIMIEISNVKVTPPDYSPIIASIKGKSYDALATFTVNIFKEVMAKEG 111 Query: 204 LPATIILRALNYTTE--QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 + T I + +I L + K + V + S + V Sbjct: 112 ISITKISSYEGKDSHLIKIPLLIGYGNKNPLDTAKYLVPNVIGGVFINKQSVEKVGINLV 171 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 R ++ P + + + + + ++ Sbjct: 172 EKITTWPKF-RVVKPNSFTFSFSSVSPPNILPTRYRHYKISLD--------ISQLEASNI 222 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY-RMMRPGEPPTREA 380 + + + +I +L D + + + I R E T Sbjct: 223 SSTKTFITVNIVLLSQYLSRVSLGFIRRSLSYDMPPEVVYLVNAIIDSAKRLTESITDFN 282 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI----LSKDDIIDVMKKLIDIR 436 ++ +L +E S + +F +L + L +I +++K + Sbjct: 283 IDTYINDLVEAEHVKQKSQLTINEFKYEMLHNFLPHMNYTPDQLKGFYMISLLRKFLYCI 342 Query: 437 NGKGEVDDIDHLGNRRIRSVGEM--------AENQFRVGLVRVERAVKERLSLGDLDTLM 488 D D + RI + G+ EN + K R + ++ Sbjct: 343 YYTSRYPDRDSMVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAVNIHVL 402 Query: 489 PQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 +N S +F S + + + I+ R + + F VR Sbjct: 403 TTPGLNHAFSSLLSGKFKKSDGSYRTHPHYSWMQNISIPRSVGFY--PDQVKISKMFSVR 460 Query: 549 DVHPTHYGRVCPIETPE-GPNIGLINSLSVYAQT-----NEYGFLETPYRKVTDGVVTDE 602 HP+ Y C + PE GP +GL++ LSV + +EY LE + D+ Sbjct: 461 KYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDD 520 Query: 603 IHYLS---AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD-VSTQ 658 I Y I N ++A N N+ + FV D + G D ++ Sbjct: 521 ISYFETGFPITIENALVASLNPNMICD--FVTDFRRRKRMGFFGNLEVGITLVRDHMNEI 578 Query: 659 QVVSVGASLIPFLEHDDANRALM------GANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 ++ L+ D +M + + ++ + P V ++ S Sbjct: 579 RINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFPHVIEMVDIEQFTFS 638 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 V ++ ++ + + + E G + + + + + Sbjct: 639 NVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGIN-HNSGPRAILGCAQAKQA 697 Query: 773 L-------GEPVERG-------DVLADGPSTDLGEL---ALGQNMRVAFMPWNGYNFEDS 815 + ++ G + + + ++ GQ++ +A M + G N ED Sbjct: 698 ISCLSSDIRNKIDNGIHLMYPERPIVISKALETSKIAANCFGQHVTIALMSYKGINQEDG 757 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 I++ ++ +Q + ++ +E A SKL+ +G+V + A Sbjct: 758 IIIKKQFIQRGGLDIVTAKKHQVEIPLENFNNKERDR------SNAYSKLESNGLVRLNA 811 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 + GD + ++ + F D S + + V VQV Sbjct: 812 FLESGDAMARNISSRTLEDD----------FARDNQISFDVSEKYTDMYKSRVERVQV-- 859 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + R L ++E + K + Q + + + Sbjct: 860 ELTDKVKVRVLTMKERRPILGDKFTTRTSQKGTVAYIADETELPYDENGITPDVIINSTS 919 Query: 996 RWLELGL 1002 + + Sbjct: 920 IFSRKTI 926 >UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=Rhodospirillales RepID=D1GLJ0_GLUDI Length = 325 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 140/327 (42%), Positives = 190/327 (58%), Gaps = 29/327 (8%) Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+INGTERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++ Sbjct: 1 FIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAARVIPYRGSWLDFEFDSKDLIY 60 Query: 196 VRIDRRRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIF 230 VRIDR+RKLP T +L AL ++IL F+ +V+F Sbjct: 61 VRIDRKRKLPVTTLLYALEGASSAAARAAKVAEGGDVDALEIRGMDADEILGYFYNQVVF 120 Query: 231 EIRDNKLQMELVPERLRGETA--SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 E RG +G+V E ++TAR +R++ + +++ P Sbjct: 121 TKGPKGWARPFDAESFRGLKLLEPLVDAQSGEVVAEADAKLTARMVRKIAETTKEVLVGP 180 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 I G+ VA D ++ TGE+ A EL+ L L ++G ++ TL + +GP+I Sbjct: 181 AGLI-GRYVAHDLVNMETGEIYAEAGEELTEARLEALEEAGVDQLPTLAVDA-SNGPWIR 238 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 TL VD R AL +IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR+K N Sbjct: 239 NTLTVDKNTSREDALTDIYRVMRPGEPPTPETAEAMFSGLFFDADRYDLSAVGRVKMNMR 298 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDI 435 L + + +L K+DI+ +K + ++ Sbjct: 299 LGLDAPDTIRVLRKEDILRTVKIMCEL 325 >UniRef50_UPI0001C41F1A DNA-directed RNA polymerase subunit B'''' RpoB2 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F1A Length = 520 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 85/491 (17%), Positives = 170/491 (34%), Gaps = 51/491 (10%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL-DFEFDPKDNLFVRIDRRRK 203 IV +S F ++ + + + + Sbjct: 18 IVDHHIKSYNDFVENRIQNIIDITEPITIENEKGNYTLRTGKLTIEKPFTKEADGSKSMI 77 Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDN--KLQMELVPERLRGET----------- 250 P LR LNY+ L++ + + + + +P L+ Sbjct: 78 YPTEARLRNLNYSAHMYLEMALHDNNSDEEEELENVYIGELPLMLKSSICHLHGLSDEEL 137 Query: 251 -----------ASFDIEANGKVYVEKGRRITARHIRQ----LEKDDVKLIEVPVEYIAGK 295 F + + + V + I + +E K I ++ Sbjct: 138 VKRGEDPKDPGGYFIVNGSERAVVTMEEIAPNKIILERIDEIEDRHAKAIVTSIKSGFRA 197 Query: 296 VVAKDYIDESTGELICAA------NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 + +Y + + LL L S I + ++D + YI++ Sbjct: 198 RITLEYKKPRKSGVFLRISFPYVPGEIPLVILLRALGLSTDGEIISKISDDFNFQMYIAD 257 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 L+V + +L + + + + ++AA N + Sbjct: 258 DLQVSEKDLKLDSDLLLSLSNEERDEYLQKAAIKYIGNRVAKGMTEEYRIKRAEDVIDRY 317 Query: 410 LRE---EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 L + ++ + L+ + G+ E D DH N+R+R G++ E+ FRV Sbjct: 318 LLPHMGIESDKRYDKAIYLAEMTEMLLQVIEGQREPHDKDHYTNKRLRVSGDLTEDLFRV 377 Query: 467 GLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQ 517 + R + RL L + + + ++ +K + SQ +D+ Sbjct: 378 AFSSLTRDMSYRLERSLSRGKELSIKQAVRSDVLTENIKHAIATGNWVGGRAGVSQLLDR 437 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 + ++ ++H RR+ + LTR + FE RD+HPT +G++CP ETPEGPN GL+ +L++ Sbjct: 438 VSYMATLSHLRRVVS----PLTRSQPHFEARDLHPTQFGKICPNETPEGPNCGLVKNLAL 493 Query: 578 YAQTNEYGFLE 588 + +E E Sbjct: 494 MCKISEGFDPE 504 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 96/260 (36%), Gaps = 50/260 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 + +G D ++ + S+ F+E + + I++ GN L+ Sbjct: 4 ETWGLVDSFFDKYDIVDHHIKSYNDFVENRIQNIIDITEPIT----IENEKGNYTLRTGK 59 Query: 73 YRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 + +P + E ++R + YSA + +++ L + E + + V Sbjct: 60 LTIEKPFTKEADGSKSMIYPTEARLRNLNYSAHMYLEMALHDNNSDEEE------ELENV 113 Query: 123 YMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRSPGVFFD 158 Y+GE+PLM + F++NG+ER +V+ +P Sbjct: 114 YIGELPLMLKSSICHLHGLSDEELVKRGEDPKDPGGYFIVNGSERAVVTMEEIAPNKIIL 173 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP--KDNLFVRIDRRR---KLPATIILRAL 213 + I + + E+ K +F+RI ++P I+LRAL Sbjct: 174 ERIDEIEDRHAKAIVTSIKSGFRARITLEYKKPRKSGVFLRISFPYVPGEIPLVILLRAL 233 Query: 214 NYTTE-QILDLFFEKVIFEI 232 +T+ +I+ + F++ Sbjct: 234 GLSTDGEIISKISDDFNFQM 253 >UniRef50_O27123 DNA-directed RNA polymerase subunit B'' n=19 Tax=Euryarchaeota RepID=RPOB2_METTH Length = 519 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 84/502 (16%), Positives = 173/502 (34%), Gaps = 54/502 (10%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 +V S F + + + + + + YR + + + Sbjct: 24 LVDHHIHSYNDFVSNRIQEIIDTSEPIELEQG-KYRVETGKVSIEKPFIKEADGSKSKIY 82 Query: 205 PATIILRALNYTTEQILDLFFEKVIFEIRD-NKLQMELVPERLRGET------------- 250 P LR L Y+ L++ K + K+ + +P L+ E Sbjct: 83 PTEARLRNLTYSAHMSLEMRLLKEGGPETEFEKVYIGELPVMLKSEICHLHGLSRKELME 142 Query: 251 ---------ASFDIEANGKVYVEKGRRITARHIRQ----LEKDDVKLIEVPVEYIAGKVV 297 F + + + V + I + +++ + I + + Sbjct: 143 KGEDPADPGGYFIVNGSERSIVTMEEIAPNKIILERIGEEDENRARAIVTSIRSGFRARI 202 Query: 298 AKDYIDESTGELICAANMEL---SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + +Y + + + L+ L G + + T+ D Y + + D Sbjct: 203 SLEYRKPRKTGVFLRISFPYVPGEIPLVILLRALGLATDQEIITSISDDFNY--QMIAAD 260 Query: 355 PTNDRLSALVEIYRMMRPGEPPTRE-----AAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 L L + M+ + R +A N D Sbjct: 261 DIQVSLDRLNLNKKEMKELDEEDRREYLIRSAIKYIGNRVAKGMTEDYRIKRAEDVIDRY 320 Query: 410 LRE---EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 L + + ++ + L+ + +G+ D DH N+R+R G++ E+ RV Sbjct: 321 LLPHIGTEPEKRLEKATYLAEMTEMLLQVISGERRPHDKDHYTNKRLRVSGDLMEDLLRV 380 Query: 467 GLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQ 517 + R + +L + + + ++ +K + SQ +D+ Sbjct: 381 AFTSLSRDMSYQLERSLARGKEPSVKQAVRSDVLTENLKHAIATGNWVGGRAGVSQLLDR 440 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 + + ++H RR+ + L+R + FE RD+HPT +G++CP ETPEGPN GL+ +L++ Sbjct: 441 TSYMGTLSHMRRVVS----PLSRSQPHFEARDLHPTQFGKICPNETPEGPNCGLVKNLAL 496 Query: 578 YAQTNEYGFLETPYRKVTDGVV 599 A+ +E + GVV Sbjct: 497 LAKISEGSDASEVEEVIKMGVV 518 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 68/423 (16%), Positives = 151/423 (35%), Gaps = 61/423 (14%) Query: 7 EKKRIRKD-FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 +K ++K +G D L+ + S+ F+ ++ + PI+ G Sbjct: 3 WRKSMKKSAWGLVDAFFDKYDLVDHHIHSYNDFVSN------RIQEIIDTSEPIELEQGK 56 Query: 66 SELQYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 ++ + +P E ++R +TYSA + +++RL + Sbjct: 57 YRVETGKVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEMRL-------LKEGGP 109 Query: 116 DIKEQEVYMGEIPLMTDNG------------------------TFVINGTERVIVSQLHR 151 + + ++VY+GE+P+M + F++NG+ER IV+ Sbjct: 110 ETEFEKVYIGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVNGSERSIVTMEEI 169 Query: 152 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP--KDNLFVRIDRRR---KLPA 206 +P G+ + I + + E+ K +F+RI ++P Sbjct: 170 APNKIILERIGEEDENRARAIVTSIRSGFRARISLEYRKPRKTGVFLRISFPYVPGEIPL 229 Query: 207 TIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI---EANGKVY 262 I+LRAL T ++I+ + +++ + + ++ + + Sbjct: 230 VILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDRLNLNKKEMKELDEEDRREYLI 289 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 + I R + + +D I+ + I ++ + E++ LL Sbjct: 290 RSAIKYIGNRVAKGMTEDY--RIKRAEDVIDRYLLPHIGTEPEKRLEKATYLAEMTEMLL 347 Query: 323 AKLSQSGHKRIETLFTNDLDH--GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 +S + +TN G + + LRV T+ ++ R + G+ P+ + Sbjct: 348 QVISGERRPHDKDHYTNKRLRVSGDLMEDLLRVAFTSLSRDMSYQLERSLARGKEPSVKQ 407 Query: 381 AES 383 A Sbjct: 408 AVR 410 >UniRef50_C7DHC6 RNA polymerase beta subunit n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC6_9EURY Length = 486 Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 75/472 (15%), Positives = 160/472 (33%), Gaps = 42/472 (8%) Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 + F+ G R++ +Q P V + K + + + +I S Sbjct: 22 IDSYNRFISVGINRIVENQSIIEPEVSDFAIKLERIRLEQPV----VIESDSSTRMIMPH 77 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 + T ++ + E + + + P++L E Sbjct: 78 EAQVRNFTYSAPMYISYTPLISGIAKADSSGDAYVGEMPVMVRSNLCYTKNMSPQQLIEE 137 Query: 250 T-------ASFDIEANGKVYVEKGRRITARHIRQLEKDDV--KLIEVPVEYIAGKVVAKD 300 F I+ +V V + + EK++ K+ + + A + +D Sbjct: 138 GEDPDDPGGYFIIKGTERVLVGIEDLAPNKMMTTKEKNETVTKVFSTTLNFRAKCTITRD 197 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 T + + +L L + ++ + ++ + ++ L Sbjct: 198 EYGIFTIMFPTLSKELNLVMVLRALGMQSKEMLDLITNREVKNDFLLNIELSKAKDLSSA 257 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 A+ E+ ++ P + T + + + D Y L +G S Sbjct: 258 EAMSELGKITAPNQAQTYQEKRAEMQ-----LDTYILPHLG-----------TTPQSRAD 301 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 ++ + ++ + + DD DH N+R++ G++ E F + +K + Sbjct: 302 KALYLVRMAERTSMVAYNYVKSDDKDHYANKRVKLAGDLMEELFNTAFKAFVKDIKYHVE 361 Query: 481 L--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRIS 531 L + IN ++ + + SQ +D+ N S + H RR+ Sbjct: 362 RTTARGRKLAVKTNINPDTLTEKILYSMSTGSWPAGQTGVSQVLDRFNFASSVAHIRRVK 421 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 + L + F+ RDVH TH G++C ETPEG +GL L++ ++ Sbjct: 422 S----PLAKRHPHFKARDVHGTHLGKICISETPEGIEVGLTRYLALMSKVTV 469 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 49/249 (19%), Positives = 89/249 (35%), Gaps = 49/249 (19%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 ++ + Q+DS+ +FI G+ + I+ + ++ RL + Sbjct: 8 IQAYIESTSIAQQQIDSYNRFI------SVGINRIVENQSIIEPEVSDFAIKLERIRLEQ 61 Query: 78 PV----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 PV E Q+R TYSAP+ + G K + Y+GE+ Sbjct: 62 PVVIESDSSTRMIMPHEAQVRNFTYSAPMYISYT------PLISGIAKADSSGDAYVGEM 115 Query: 128 PLMTDNG------------------------TFVINGTERVIVSQLHRSPGVFFDSDKGK 163 P+M + F+I GTERV+V +P K K Sbjct: 116 PVMVRSNLCYTKNMSPQQLIEEGEDPDDPGGYFIIKGTERVLVGIEDLAPNKMMT-TKEK 174 Query: 164 THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDL 223 + KV + + E+ +F + ++L ++LRAL ++++LDL Sbjct: 175 NETVTKVFSTTLNFRAKCTITRDEYGIFTIMFPTL--SKELNLVMVLRALGMQSKEMLDL 232 Query: 224 FFEKVIFEI 232 + + Sbjct: 233 ITNREVKND 241 >UniRef50_Q3LW79 Second-largest subunit of RNA polymerase III n=1 Tax=Bigelowiella natans RepID=Q3LW79_BIGNA Length = 1074 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 73/367 (19%), Positives = 136/367 (37%), Gaps = 65/367 (17%) Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + + L K + E+L E EK+ R + + Sbjct: 763 INKPITEPTKITFFEFLTRKKIIKNDSEEKLGENNFLSFSSKEKRFNILRSHLANSICMI 822 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 + + + + GDK + RHG KGV+ + P++ NG D ++NP G Sbjct: 823 TKK-SDIDLKYTLNHFPEIGDKYSSRHGQKGVVGLMGNKIHFPFNLNGQIPDFIMNPAGF 881 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 SR +G + ++ Sbjct: 882 TSR---------------MTMGQVLESLF------------------------------- 895 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKE--AEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 L KG P + +F+ K + + L L D SG+ + + + G + Sbjct: 896 --------TKVVLAKGNPFKSSIFESNKLYLKDCTQSLILCDTEFSGKETMINPKKGSIY 947 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + G ++ KL HLV +K+ +RS+G ++T+QP+ G+ + GG R GEME + A+ Sbjct: 948 NSTIFTGPIFYHKLKHLVSNKIQSRSSGRKHILTKQPVKGRGKQGGLRIGEMEKDCIIAF 1007 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH--------QMEPGMPESFNVLLKEIRSL 1333 G L E + SD I+D ++ + + +F +L +E+++ Sbjct: 1008 GCTSVLVERMLENSDSHKFILVKKSGIIDASNKKLSTTNKIYKNRISYAFKLLFQELQAT 1067 Query: 1334 GINIELE 1340 I+I ++ Sbjct: 1068 NISIRIK 1074 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 108/854 (12%), Positives = 249/854 (29%), Gaps = 109/854 (12%) Query: 154 GVFFDSDKGKTHSSGKVLYNA-RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRA 212 G F K Y+ +I + K++ +P + Sbjct: 74 GKNFKKFTPFISRLCKYSYSGILLIAINVETIKLNQFKKNDSKCYFINLGNIPILLRSLK 133 Query: 213 LNYT------TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 + + + + I K + L+ E + +F + V + Sbjct: 134 CILNYAQVKKSICYGECPLDLGGYFILKGKERSILIQEIYKSSLFNFRLYKKNSVITKL- 192 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 + K+I ++ + ID + L + Sbjct: 193 -----FMKYYKKIFKYKIIINKSKFTLSSNLFNSEIDLIILLIALGLKEVKLYHFLNSIG 247 Query: 327 QSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFE 386 + + + +S+ + + + A + ++ + E Sbjct: 248 VYSMELFSKINNTFRNFDKQLSKCYLKNKIDSFVKAFIFNHKKKF---------IDKFLE 298 Query: 387 NLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 N+ SE Y +I ++KK + + + + Sbjct: 299 NILLSEIPYLNGDFSY------------------KIVFLIILIKKSLILLHNNTPLISGF 340 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-----SLGDLDTLMPQDMINAKPISAA 501 L N R +G++ + F + ++ + + + ++ + ++ + I+ A Sbjct: 341 SLSNTRYLRIGDLLKITFSSCMNKLFEFLIKSILKLSTNITKNSKINIIRILKSHNITQA 400 Query: 502 VKEFFGSSQL------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 ++ S SQ + + LS + +I++ + + R Sbjct: 401 IEYSLLSGIFTNKNLVVSIVCNSQVHTKFSYLSTTSMLNKINSY----VNKSIKSLYPRS 456 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD------EI 603 + ++ RVC IE+PEG + GLI +LS Y+Q + + E + T + Sbjct: 457 LFLNYWNRVCFIESPEGESCGLIKNLSYYSQIS-FTIDENKITSYLLTLGTRVFRNDLNL 515 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 LS + + + + + + R F V+ + S Sbjct: 516 LMLSRKQFSVFHKTKIIGYHENIFWLIYTIKQLRRSFFLDKFLNYYVNE---KICVINSD 572 Query: 664 GASLIPFLEHDDANRALMGAN--------------MQRQAVPTLRADKPLVGTGM--ERA 707 ++ L ++ N M R + L D+ + + E+ Sbjct: 573 EGRILRPLFTLKIYKSNTIKNNYFGKTDNKTLRDLMLRGYIEFLDYDEEICTNPVPFEKN 632 Query: 708 VAVDSGV------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 + + T G+V + + ++ M G Y L ++ ++ Sbjct: 633 INKYTSHIEIGNFTIFGIIAGIVPFTNHNQAPRNTYHCAMEKQNIG--FYGLNQFVNNSL 690 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 I P SL S + QN+ ++ M ++ +N EDS++ ++ Sbjct: 691 TINILWYPQKSLV-------YNDISKSNKTDIIGGAQNIILSVMNFDSFNIEDSLIANKD 743 Query: 822 VVQEDRFTT------IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 F + + ++ TK+ E + + KL E+ + + Sbjct: 744 SSFLGLFRGSSLIIFLIYRINKPITEPTKITFFEFLTRKKIIKNDSEEKLGENNFLSFSS 803 Query: 876 EVTGGDILVGKV-TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 + +IL + + L + K SS GV G + + F Sbjct: 804 KEKRFNILRSHLANSICMITKKSDIDLKYTLNHFPEIGDKYSSRHGQKGVVGLMGNKIHF 863 Query: 935 TRDGVEKDKRALEI 948 + + + Sbjct: 864 PFNLNGQIPDFIMN 877 Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats. Identities = 91/704 (12%), Positives = 205/704 (29%), Gaps = 83/704 (11%) Query: 28 LSIQLDSFQKFIEQDPE--------------GQYGLEAAFRSVFPIQSYSGNSELQYVSY 73 + Q+ S+ FI + ++GL + + + L+ Sbjct: 16 IYQQIISYNNFITNTIKNIVKKKKIKIIFKDNEFGLNIRYNILKRGTNSHLTLPLKIEGK 75 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 F ++ +YS L + + + + + D K + +G IP++ + Sbjct: 76 NFK--KFTPFISRLCKYSYSGILLIAINVETIKLNQFKK--NDSKCYFINLGNIPILLRS 131 Query: 134 GTFVINGTERVIVSQLHRSP---GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 ++N + P G +F + + +Y + + +R Sbjct: 132 LKCILNYAQVKKSICYGECPLDLGGYFILKGKERSILIQEIYKSSLFNFR---------- 181 Query: 191 KDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 L+ + KL + Y F + L + L+ L+ Sbjct: 182 ---LYKKNSVITKLFMKYYKKIFKYKIIINKSKFTLSSNLFNSEIDLIILLIALGLKEVK 238 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK----VVAKDYIDEST 306 + + G VY + R +K K K K +ID+ Sbjct: 239 LYHFLNSIG-VYSMELFSKINNTFRNFDKQLSKCYLKNKIDSFVKAFIFNHKKKFIDKFL 297 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE- 365 ++ + L+ D K+ ++L + +L L Sbjct: 298 ENILLSEIPYLNGDFSYKIVFLIILIKKSLILLHNNTPLISGFSLSNTRYLRIGDLLKIT 357 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 M ++ L N+ + + + +++ + G + Sbjct: 358 FSSCMNKLFEFLIKSILKLSTNITKNSKINIIRILKSHNITQAIEYSLLSGIFTNKNLVV 417 Query: 426 IDV----MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER-AVKERLS 480 V + + ++ I+ N+ I+S+ + F RV E S Sbjct: 418 SIVCNSQVHTKFSYLSTTSMLNKINSYVNKSIKSL--YPRSLFLNYWNRVCFIESPEGES 475 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT-------HKRRISAL 533 G + L I+ + + + F + N L ++ HK +I Sbjct: 476 CGLIKNLSYYSQISFTIDENKITSYLLTLGTRVFRNDLNLL-MLSRKQFSVFHKTKIIGY 534 Query: 534 GPGGLTRERAGFEVRD-------VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 ++R ++ ++C I + EG + + +L + + Sbjct: 535 HENIFWLIYTIKQLRRSFFLDKFLNYYVNEKICVINSDEGRILRPLFTL----KIYKSNT 590 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 ++ Y TD ++ IE LD + + V Sbjct: 591 IKNNYFGKTDNKTLRDLMLRGYIEF-----------LDYDEEICTNPVP------FEKNI 633 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 ++++ + + A ++PF H+ A R M++Q + Sbjct: 634 NKYTSHIEIGNFTIFGIIAGIVPFTNHNQAPRNTYHCAMEKQNI 677 >UniRef50_A7AXE5 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AXE5_BABBO Length = 971 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 118/653 (18%), Positives = 230/653 (35%), Gaps = 28/653 (4%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF-DIEANGKV 261 K TI +NY I LFF+ V ++ + K V + + I++ K+ Sbjct: 5 KDYNTIYKTYINYILNNIYTLFFDVVKYQKKLLKRNNYRVKVQNIKLYFNLLSIKSIDKI 64 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY---IDESTGELICAANMELS 318 ++ + +K I +D + LI N Sbjct: 65 NYNSYYLLSYSTMYYSFNVPLKFIFNDQSKSININYNILNIPKVDATGEILINGFNRTPV 124 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 L L + + + + + L N L + + N + + + E Sbjct: 125 LHLKSIIKHTSTVQKKRLIKNYLINLTGFNYMHVSVSQNKYVYVKLNDLSKLDLSEVIKF 184 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-GSGILSKDDIIDVMKKLIDIRN 437 + F L E ++ +N +++ + S DII V+ K I+ + Sbjct: 185 NSIHKNFIKLTIFEIIEAINDKFYNDYNDNVINSFFTAYNKNCSYADIISVINKFINAVH 244 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP 497 K + D N+ + S+ + N + L ++ L LD+ I Sbjct: 245 KKITFINSDSFINKNVNSICDNMFNLIKKSLSTYHFTDPKKHILHVLDSKTKFSNI---- 300 Query: 498 ISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV---RDVHPTH 554 +E F + + +Q N LS + +K +++ G + R V + Sbjct: 301 --PLFRENFLLNPSLHYTNQLNLLSCVQNKFKLNIFGYSTSSTSTTFAIPKYLRQVQYFY 358 Query: 555 YGRVCPIETPEGPNIGLINSLSVYA--QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG 612 + + T +G G++++++ Q + + +K + + D+ + Sbjct: 359 LNFINILYTVDGEKCGILSTITTNTIEQNKKLKTVIINKQKFLNNIYLDQF----SKNLN 414 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD-QVDYMDVSTQQVVSVGASLIPFL 671 + I N+ L + +F + V GE + D ++ + ++ LIPFL Sbjct: 415 SITINNYNNLLKKSYNFKINHVEVIENGEFKIVKLDKHSSNSSLTFYNIFNITELLIPFL 474 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 ++D R+LMG+ M QAVP + ++ V T + + S ++ G++ + Sbjct: 475 LNNDMCRSLMGSKMHTQAVPLIHSNPQYVYTKYNQITNLISNKCIISSTSGIIVLSTNYK 534 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 I I + + Y L+ Y + N P V GE G +LA Sbjct: 535 ITILDDNNRYVS-------YYLSPYNIHDYNYYTRYRPVVWEGEKSNIGTILAIPSDAAN 587 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 E LG N V + + GY ED+I++++ V D T++ K Sbjct: 588 CEFTLGFNNFVNYSFYYGYEHEDAIVLNKNVAYNDMLTSLEFDIDDIDLSFKK 640 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 96/536 (17%), Positives = 190/536 (35%), Gaps = 71/536 (13%) Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 + YN +++ ++ ++ + D N+ + Sbjct: 504 YTKYNQITNLISNKCIISSTSGIIVLSTNYKITILDDNNRYVSYYLSPYNIHDYNYYT-R 562 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 +V+ G + G IL E L F + Sbjct: 563 YRPVVWEGEKSNIGTILA-----IPSDAANCEFTLGFNNFVNYSF------YYGYEHEDA 611 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 V++ V D + + ++ ++ K KK + L + +F I ++ + Sbjct: 612 IVLNKNVAYNDMLTSLEFDIDDIDLSFK-KKKYIETILIDNKKKIFKIIIRIISNLKKQK 670 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + K R + + L ++K + + + G +L Sbjct: 671 REALKRAVRRRKRRRKIKKIVIKSKKCLYSDQTDIKKLVKYECTQYSNFVRIGSNLNYAN 730 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 K++L I GDK+ GRHGNKG ISKI I + PY +I+ +P+G SR Sbjct: 731 F---KLFLVSINNINVGDKLCGRHGNKGTISKIIEIPESPYTSEDKLPNIITSPIGAASR 787 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQ +E ++G +I + + +++ + + K+ S + Sbjct: 788 MNVGQFIEGYIGNTCDIDNVRIKSPINLHSSDMYSSLYVKSVSNKINNRYVKLKSSQNAV 847 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 D +TG + + Sbjct: 848 S-------------------------------------------VFRDFKTGYKLKGFTH 864 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +Y KL H K R + S + Q + G+++ Q+FGEMEVW+LEA+GA+Y Sbjct: 865 HVILYFFKLMHTSKSKFRYRCSSSKLV---QYVHGESKE--QKFGEMEVWSLEAHGASYN 919 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 L+EM +K++ K+ + + + ++F L+ E++++ ++I+ ++ Sbjct: 920 LKEMSLLKTNIKFVTEKIMYDYSN-------LLSKTFTDLIAELKAVLVSIKFNNK 968 >UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular organisms RepID=B2X2B9_CHLMO Length = 1661 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 96/257 (37%), Positives = 139/257 (54%), Gaps = 5/257 (1%) Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 ++I + + Y+L KY RSNQ+TC+ P V G+ VE GD+LAD ++ Sbjct: 242 TKIKVNSYKIIENCDNYLSMEYSLEKYHRSNQDTCLVHKPAVVEGQWVESGDLLADCSAS 301 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 GELALGQN+ + +MPW GYNFED+IL+SER+V +D +T+IHI+ ++KLG ++ Sbjct: 302 VGGELALGQNILIGYMPWEGYNFEDAILISERLVYDDLYTSIHIERYEVNIEESKLGMDK 361 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 IT +IP V +L L+ GI+ IG+ V GDILVGKVTP + + +KLL I + Sbjct: 362 ITREIPEVDSDSLKNLNSLGIIKIGSWVQEGDILVGKVTPVNKKNQSNYQKLLYLILDKT 421 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGV-----EKDKRALEIEEMQLKQAKKDLSEEL 964 S V+DSSLR P G+ VI +QVF + A + + K L Sbjct: 422 VSPVRDSSLRAPKGIKAKVIGLQVFKNNTNLDRIESPHSIASKNTKSSQKIKANLSFSGL 481 Query: 965 QILEAGLFSRIRAVLVA 981 Q + ++ Sbjct: 482 QNINNKEKNKPFISAPT 498 Score = 193 bits (489), Expect = 6e-47, Method: Composition-based stats. Identities = 98/361 (27%), Positives = 152/361 (42%), Gaps = 51/361 (14%) Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 L KL R+ KD + V + G+ + L ++ + Sbjct: 568 LNTHNKLRRSEVILSEKTEKD---KNLLYCKAPVA----LNKVGLAPSNKRLTWKKADNQ 620 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL 1014 + + + + I + ++ + + ++ L + Sbjct: 621 KLNTEETNSINISINTKNNYHKSEGYINDPLTDGSLINETKKSHRSASVLDKGAFSLGEK 680 Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 A Q + K + + + + ++VYLA +RR+Q GDKMAGRHGNKG Sbjct: 681 ALQRSSTGQNLKTKKTGMQALYLK----STSSVSSIQVYLAERRRVQVGDKMAGRHGNKG 736 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 +IS+I PIED+P+ +GTP+D+VLNPLGVPSRMN+GQI E LG+A K +G+ Sbjct: 737 IISEILPIEDLPFLPDGTPLDMVLNPLGVPSRMNVGQIYECLLGLAGKHLGENYKVFPFD 796 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 + GA+ + S + V Sbjct: 797 E--------------IYGAEASRSFVYSKLYNASVKTGKT-------------------- 822 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 L + G+I LYDGRTGE F + +TVGY Y+L+L H+VDDKMH T + ++ Sbjct: 823 -----WLFNPNLPGKIGLYDGRTGESFHQAITVGYAYILRLVHMVDDKMHCL-TPDHDVL 876 Query: 1255 T 1255 T Sbjct: 877 T 877 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 55/95 (57%), Positives = 73/95 (76%), Gaps = 1/95 (1%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 +RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLT+KSDD++GR + Sbjct: 1563 SRSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGYGAAFTLLEMLTIKSDDMSGRMTL 1622 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + N++ G PESF VL+ E+++L ++I L Sbjct: 1623 WSNLILNKEIS-IGTPESFKVLICELQALCLDIGL 1656 >UniRef50_C0GNU6 RNA polymerase Rpb2 domain 6 n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNU6_9DELT Length = 1518 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 87/410 (21%), Positives = 146/410 (35%), Gaps = 84/410 (20%) Query: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 N G VI + + K + + + L+ + Sbjct: 373 PWYGFNYEDGIVISRSAAEKF-LSVKKHKFGPYFCPGNYRPANPDSKWRKLDRDGLAPQG 431 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL--KHEFEKKLEAKRR 1034 + +G V A +++Q + LAE H K + + Sbjct: 432 QEVKSGDVLAAF-----YPVRWNHDSRSKKRQIVVNTLAEPLLVRVPDHVQGKLVRFEVV 486 Query: 1035 KITQGD-DLAPGVLKI-VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 + D L + ++ V + + R ++PGDK+ GRHGNKGVIS+I P +MPY + Sbjct: 487 CLETSDLPLPRHITRMAVHMEIEESRPLEPGDKIMGRHGNKGVISRILPDREMPYFLDSM 546 Query: 1093 P--------------------VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 V+++LNPLGV RMN GQ+LE H G+A + I +++ Sbjct: 547 HGITDLRSSSHFHGEEQAHTHVEVILNPLGVIGRMNTGQLLECHTGLAMRCIPERMEFYQ 606 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 + F Sbjct: 607 N-------------------------------------------------SGMPFSSVDI 617 Query: 1193 AEIK-ELLKLGDLPTSGQIRLY---DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA-RS 1247 ++ +LL + +G+ RL+ + Q +G Y++KL+H+ DK H Sbjct: 618 ESLRQDLLSTKIVDETGKARLFWRDEAGNHVQTGHASMIGVQYLMKLDHMARDKFHVCGK 677 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 ++T QP+ G+++ GG R GEME W + A + E+L D Sbjct: 678 KPPRCMITNQPVKGRSRGGGLRLGEMENWCIIERQAWDVIDELLQKSEPD 727 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 113/343 (32%), Gaps = 72/343 (20%) Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS--SQLSQF--MDQNN 519 R+ +K+ L + + + + F+ + ++ F D N Sbjct: 149 LSSLTHRLRYFLKKNLEKWKSRAVTNSYAASVLLAGSLDEAFYSTFYRRVDHFPLADTTN 208 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEV----RDVHPTHYGRVCPIETPEGPNIGLINSL 575 L+E R++SA + G + R++ P H G +CP+ETPE +IGL+ L Sbjct: 209 KLAETAQGRQVSAKSLRCHRKTMIGSKPEDNVRNLLPEHTGMICPVETPESESIGLVMHL 268 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 + A+ + + E + Sbjct: 269 ARKARPELWSQD-------------AAFNENDQRSEEGILKTPD---------------- 299 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 + A ++P+++H D RA+MGA +QA+ + Sbjct: 300 ---------------------PDNFLGYSACMVPYIQHTDPTRAMMGAKNMKQALSLTQG 338 Query: 696 DKPLVGTGMERAV--------AVDSGVTAVAKRGGVV--QYVDASRIVIKVNEDEMYPGE 745 + PL+ TG E V +D G + Y D I E + + Sbjct: 339 EAPLIRTGHEEEVFGRGEHDLDMDIGRNLLVAYLPWYGFNYEDGIVISRSAAEKFLSVKK 398 Query: 746 AGIDIYNLT-KYTRSNQNT---CINQMPCVSLGEPVERGDVLA 784 Y Y +N ++ +++ G+ V+ GDVLA Sbjct: 399 HKFGPYFCPGNYRPANPDSKWRKLDRDGLAPQGQEVKSGDVLA 441 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 57/411 (13%), Positives = 135/411 (32%), Gaps = 57/411 (13%) Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 + R ++ + S+ + + ++ + +I +E ++ + ++ R+A P L Sbjct: 222 KSLRCHRKTMIGSKPEDNVRNLLPEH-----TGMICPVETPESESIGLVMHLARKARPEL 276 Query: 694 RADKPLVGTG----MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 + E + + +V Y+ + + + Sbjct: 277 WSQDAAFNENDQRSEEGILKTPDPDNFLGYSACMVPYIQHTDPTRAMMGAKNMKQAL--- 333 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLG---EPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 + + P + G E RG+ D + +G+N+ VA++P Sbjct: 334 ------------SLTQGEAPLIRTGHEEEVFGRGEHDLD--------MDIGRNLLVAYLP 373 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD-IPNVGEAALSKL 865 W G+N+ED I++S ++ + K GP + P ++ KL Sbjct: 374 WYGFNYEDGIVISRSAAEKFL-----------SVKKHKFGPYFCPGNYRPANPDSKWRKL 422 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 D G+ G EV GD+L + +++ + + V+ VP+ V Sbjct: 423 DRDGLAPQGQEVKSGDVLAAFYPVRWNHDSRSKKRQIVVNTLAEPLLVR-----VPDHVQ 477 Query: 926 GTVID--VQVFTRDGVEKDKRALEI-EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 G ++ V + + + M++++++ + + G I +L Sbjct: 478 GKLVRFEVVCLETSDLPLPRHITRMAVHMEIEESRPLEPGDKIMGRHGNKGVISRILPDR 537 Query: 983 GVEAEKLD--KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 + + R +E+ +E + + +L Sbjct: 538 EMPYFLDSMHGITDLRSSSHFHGEEQAHTHVEVILNPLGVIGRMNTGQLLE 588 >UniRef50_Q0PPY8 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Echinoplaca strigulacea RepID=Q0PPY8_9LECA Length = 725 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 85/255 (33%), Gaps = 25/255 (9%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISA 500 DD DH G +R+ G + FR ++ + L +L Q +I ++ Sbjct: 1 DDSDHFGKKRLDLAGPLLAGLFRTLYYKLTKDANRALQKAVESGKSLELQSIIKPGILTN 60 Query: 501 AVKEFFGSSQLS-------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +K + S Q +++ S ++H RR + L R+ + Sbjct: 61 GLKYSLATGNWSEQKKAAQGKAGVSQVLNRYTYASTLSHLRRTNT----PLGRDGKIAKP 116 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R +H TH+G VCP ETPEG GL+ +L++ G P + + Sbjct: 117 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTV-GSPGWPVIDFLQSRNMELLEEYE 175 Query: 608 AIEEGNYVIAQANSNLDEEG----HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 + N H ++ R S V + ++ + Sbjct: 176 PSRNPHATKVFVNGTWVGVHPSPAHLHSQILALRRNNTISHEVSI-VRDIREREFKIFTD 234 Query: 664 GASLIPFLEHDDANR 678 + L D ++ Sbjct: 235 AGRVSRPLFVVDNDK 249 >UniRef50_Q74NB5 NEQ173 n=1 Tax=Nanoarchaeum equitans RepID=Q74NB5_NANEQ Length = 493 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 80/463 (17%), Positives = 165/463 (35%), Gaps = 58/463 (12%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 + + + ++ ++ Y+A + + D E K++ +V+I Sbjct: 69 KAQIIDIQGPRIIYPYE-----ARLRQLTYSAPVRVRFQYYEDGEL--KEDRWVKIGE-- 119 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 LP + + N +L V E F I +V Sbjct: 120 -LPVMVRSKICNTYGLSEEELL----------------KVYEDPLDPGGYFIINGVDRVI 162 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 V + + +++++ + + + G+ + + G L + ++ L+ Sbjct: 163 VMEENLAPNQFY--VQENNGEYVGKMLSVRGGRKIPITIELKKDGILYLTFSRLENVPLI 220 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAE 382 + G K E +I L D S + + ++ PG T+E + Sbjct: 221 PFVKVLGIKDNEIAQYLGNYEETFI--NLLEFADQDYESII--LGKIKIPG--LTKEEKQ 274 Query: 383 SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 + +E L+ D Y L +G L +++ KL+ + +G+ + Sbjct: 275 AKYERLYEIVDNYLLPHIGY-----------DPSLRRLKAINLLKYASKLLKLAHGEIKE 323 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISA 500 DD DH N+RI G++ FR + +K ++ ++ + Sbjct: 324 DDRDHYMNKRILMAGDLVGELFRSAFYAQLQNLKYIYQRNAKRKKITSIEEFVSVDVFNQ 383 Query: 501 AVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 ++ F + Q SQ +D+ N L+ + R++ L E E R H T Sbjct: 384 RIETAFATGQWVGGKTGISQLLDRTNYLATVWALNRVTT----SLEEENEMIEARRTHGT 439 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 H+GR+ PI+TPE +IGL +L++ ++ E + + Sbjct: 440 HWGRLDPIDTPEDKSIGLRKALTLLSKITVDIEEEKILPIIKE 482 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 72/438 (16%), Positives = 139/438 (31%), Gaps = 95/438 (21%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M Y+ K I+K + + P + QLDSF I+ GL+ + V ++ Sbjct: 1 MEYNVYSKLLIKKYYEEHP-------ITRPQLDSFNWLIDH------GLKRIIQEVGKVE 47 Query: 61 SYS-----GNSELQYVSYRLGE--------PVF-DVQECQIRGVTYSAPLRVKLRLVIYE 106 + L V +G+ P E ++R +TYSAP+RV+ + Sbjct: 48 FEVTPEGVKEAYLVAVDIEVGKAQIIDIQGPRIIYPYEARLRQLTYSAPVRVRFQY---- 103 Query: 107 REAPEGTVKDIKEQEVYMGEIPLMTDNG------------------------TFVINGTE 142 + +++ V +GE+P+M + F+ING + Sbjct: 104 ----YEDGELKEDRWVKIGELPVMVRSKICNTYGLSEEELLKVYEDPLDPGGYFIINGVD 159 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW---LDFEFDPKDNLFVRID 199 RVIV + + +P F+ + Y +++ RG + E L++ Sbjct: 160 RVIVMEENLAPNQFYVQE-------NNGEYVGKMLSVRGGRKIPITIELKKDGILYLTFS 212 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG 259 R +P ++ L +I I + + + G Sbjct: 213 RLENVPLIPFVKVLGIKDNEIAQYLGNYEETFINLLEFADQDYESIILG----------- 261 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 +I + + +L E+ Y+ + + + A N+ Sbjct: 262 ------KIKIPGLTKEEKQAKYERLYEIVDNYLLP-----HIGYDPSLRRLKAINLLKYA 310 Query: 320 DLLAKLSQSGHKRIET--LFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 L KL+ K + + + L +L L IY+ + T Sbjct: 311 SKLLKLAHGEIKEDDRDHYMNKRILMAGDLVGELFRSAFYAQLQNLKYIYQRNAKRKKIT 370 Query: 378 REAAESLFENLFFSEDRY 395 + E F++ Sbjct: 371 --SIEEFVSVDVFNQRIE 386 >UniRef50_D2EG09 RNA polymerase beta subunit n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG09_9EURY Length = 492 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 84/494 (17%), Positives = 163/494 (32%), Gaps = 53/494 (10%) Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 F+ NG +++I ++ P + K+ I S + + Sbjct: 28 EYFIGNGLKKIIDTEGLIEPVIKPAGVDDFKIKINKITIGKPDIIEADSIVRLI----NP 83 Query: 194 LFVRI-DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL---------QMELVP 243 + RI D P + + L E + + F + I +K ++ Sbjct: 84 MEARIRDLTYDAPLMLSVSYLANGKEILEEEVFIGRMPIIVKSKYCNLYGLSPSELTEAK 143 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARH-IRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 E F I ++ + I + ++ K V Sbjct: 144 EDPTDPGGYFIINGTERIIITTEDLAPNNILISKDNQEGFKFSAKIFADADSIKVPHTLQ 203 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE----TLRVDPTND 358 S+ L + ++ + G + I L T+ Sbjct: 204 MSSSNLLYITFGKLKRVPIVTLIKALGITNENEIIKKIGKDDDDIINTIDMNLIAFNTSS 263 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 AL I +M+ T+E AE ++L F + S Sbjct: 264 ENEALDSIGKMLH--SIHTKETAELNIDSLLFP------------------FLGRDKDSR 303 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 + + ++ V LI G+ D DH N+R+ + + FR ++ K Sbjct: 304 KIKAEYVMYVSNLLIKSAL-AGKEVDKDHYSNKRLHAESYNLDMLFRFIFKQILNDAKYN 362 Query: 479 LSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRR 529 G P+ + + ++A ++ + Q +Q +D+ + S ++H R+ Sbjct: 363 FERGIRKDKVPDPKYIFTSDQLTARLRSALATGQWVGGRVGITQHLDRRSFPSTVSHLRK 422 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 + +L LT R + RD+H T +GR C +ETPEGP IGL +L++ + ++ G Sbjct: 423 VESL----LTSNRENYRARDLHGTQFGRFCAVETPEGPKIGLTKNLAMLSMMSKEGVDTE 478 Query: 590 PYRKVTDGVVTDEI 603 + + +I Sbjct: 479 TVKNLLKNYGVKKI 492 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 57/387 (14%), Positives = 132/387 (34%), Gaps = 72/387 (18%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-----NSELQYV 71 LD L + + SF+ FI GL+ + I+ + +++ Sbjct: 9 LLKSALDSTALAAHHISSFEYFI------GNGLKKIIDTEGLIEPVIKPAGVDDFKIKIN 62 Query: 72 SYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 +G+P + E +IR +TY APL + + K+I E+E Sbjct: 63 KITIGKPDIIEADSIVRLINPMEARIRDLTYDAPLMLSVSY--------LANGKEILEEE 114 Query: 122 VYMGEIPLMTDNG------------------------TFVINGTERVIVSQLHRSP-GVF 156 V++G +P++ + F+INGTER+I++ +P + Sbjct: 115 VFIGRMPIIVKSKYCNLYGLSPSELTEAKEDPTDPGGYFIINGTERIIITTEDLAPNNIL 174 Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT 216 D + ++ + + L++ + +++P +++AL T Sbjct: 175 ISKDNQEGFKFSAKIFADAD--SIKVPHTLQMSSSNLLYITFGKLKRVPIVTLIKALGIT 232 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 I+ + + + +F+ + + G+ + + H ++ Sbjct: 233 N----------ENEIIKKIGKDDDDIINTIDMNLIAFNTSSENEALDSIGKMLHSIHTKE 282 Query: 277 LEKDDVKLIEVP--VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE 334 + ++ + P + + +Y+ + LI +A +D +KR+ Sbjct: 283 TAELNIDSLLFPFLGRDKDSRKIKAEYVMYVSNLLIKSALAGKEVD----KDHYSNKRLH 338 Query: 335 TLFTNDLDHGPYISETLRVDPTNDRLS 361 N +I + + D + Sbjct: 339 AESYNLDMLFRFIFKQILNDAKYNFER 365 >UniRef50_D1GLP0 RNA polymerase beta subunit (Fragment) n=1 Tax=Neoasaia chiangmaiensis RepID=D1GLP0_9PROT Length = 287 Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats. Identities = 131/289 (45%), Positives = 167/289 (57%), Gaps = 29/289 (10%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 TERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++VRIDR Sbjct: 1 TERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAARVIPYRGSWLDFEFDAKDLIYVRIDR 60 Query: 201 RRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDN 235 +RKLP T +L AL ++IL F+ +V F Sbjct: 61 KRKLPVTTLLYALEGENSIAARAAKAEEGGDVDAMPIRGMDQDEILGYFYNEVPFTRMPK 120 Query: 236 KLQMELVPERLRGETA--SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 PE RG G+V E ++TAR +R++ ++ +++ V + Sbjct: 121 GWARPFDPEAFRGLKLLEPLYDADTGEVVAEADAKLTARAVRKIAEN-TRVVLVGRADLL 179 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G+ VA D ++E TGE+ A EL+ LA L +G + L + HGP+I TL V Sbjct: 180 GRFVAHDLVNEHTGEIYAEAGEELTEARLAALEDAGVTELPMLSVDGQ-HGPWIRNTLAV 238 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 D R ALV+IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR Sbjct: 239 DKNMSRDDALVDIYRIMRPGEPPTPETAEAMFRGLFFDPDRYDLSAVGR 287 >UniRef50_Q06SF4 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_STIHE Length = 1080 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 128/289 (44%), Gaps = 43/289 (14%) Query: 972 FSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 R + + + + W ++G ++K ++ + K Sbjct: 341 KERNFQKMSPNQSKQNWVKISIKKEWQKVGSFGKKKASKGKISFFPSFPQASLVGKASFF 400 Query: 1032 KRRKITQGDD----LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + + D L + V +YLA KR++Q GDKMAGRHGNKG+IS+I P +DMPY Sbjct: 401 SPSRFEKKRDASNFLKSSCISSVHIYLAEKRKVQVGDKMAGRHGNKGIISQILPRQDMPY 460 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 +GTP+D+ LNPLGVPSRMN+GQI E LG+A K +G++ + Sbjct: 461 LPDGTPIDMALNPLGVPSRMNVGQIYECLLGLAGKHLGEQYRIQPFDEA----------- 509 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 G + + S + L Sbjct: 510 ---FGPEASRSFVFSKLYSAKTKTGQS-------------------------WLFQPTNP 541 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 G+++L+DGRTG F++ +T GY YM+KL HLVD+K+H + L T+ Sbjct: 542 GKLKLFDGRTGNCFDQAITTGYSYMIKLVHLVDEKIHCLTVDHEVLTTK 590 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 121/201 (60%), Gaps = 3/201 (1%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 Y+L Y RSNQ+T + P V GE V+ GD+L+D S+ GE ++GQN+ +A++PW GY Sbjct: 14 YSLQTYQRSNQDTSMLHRPVVKEGEWVQAGDLLSDCASSIGGEFSIGQNILIAYLPWEGY 73 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI-PNVGEAALSKLDESG 869 N+ED+IL+SER+V +D +T+IHI+ + G E+IT DI L+ LD++G Sbjct: 74 NYEDAILISERLVYDDLYTSIHIERYDISTEKNPYGIEKITKDIVLLKDTTELNHLDKNG 133 Query: 870 IVYIGAEVTGGDILVGKVTPK-GETQLTPEEKLLRAIFGEK-ASDVKDSSLRVPNGVSGT 927 I +GA + GDILVGK+TP + ++ +L I G+K ++DSSLRVP G+ Sbjct: 134 IAQLGAWLKEGDILVGKITPTESKKEVARYVQLYNDILGKKINYAIRDSSLRVPRGLEAK 193 Query: 928 VIDVQVFTRDGVEKDKRALEI 948 VI V+ F E +I Sbjct: 194 VIRVKTFPERKNETKNWENKI 214 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 55/143 (38%), Positives = 85/143 (59%), Gaps = 11/143 (7%) Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTV----GYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 + G+ + ++ V ++ ++ N L ++RS+G YSL+TQQ Sbjct: 928 HGYHSKGKEEV------LPYQGAVYCLSVPNEIFYVRRNGLSVWTGNSRSSGPYSLITQQ 981 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PL G+++ GGQR GEMEVWA+EAYGAA+TL E+LT+KSDDV GR ++ V + Sbjct: 982 PLKGRSKHGGQRLGEMEVWAIEAYGAAFTLLELLTIKSDDVTGRLTIWDY-VLYKKPLYI 1040 Query: 1318 GMPESFNVLLKEIRSLGINIELE 1340 G P SF VL+ E+++L ++I + Sbjct: 1041 GTPASFKVLICELQALCLDIGIY 1063 >UniRef50_C6H0E8 RNA polymerase subunit B (Fragment) n=1 Tax=Acinetobacter sp. G13 RepID=C6H0E8_9GAMM Length = 287 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 137/289 (47%), Positives = 181/289 (62%), Gaps = 14/289 (4%) Query: 956 AKKDLSEELQILEAGLFSRIRAVLVA----GGVEAEKLDKLPRD--------RWLELGLT 1003 +KDL EE +I E R+ +L GG ++ DKL D LE+ Sbjct: 1 YRKDLKEEFKIFEEAARERVIRLLNGQESNGGGTTKRGDKLSEDVLSGLELVDLLEIQPV 60 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 DE +L Q+ E E ++K K+RK++ GD+L GVLK+VKVYLAVKRRIQPG Sbjct: 61 DEAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVVKVYLAVKRRIQPG 120 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 PVDIVLNPLGVPSRMN+GQILETHLGMAAKG Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVDIVLNPLGVPSRMNVGQILETHLGMAAKG 180 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 +GD+I+ M+K+Q+ V +LR+F+ + Y+ + DL + +DEE+++L+ NLR G+P+A Sbjct: 181 LGDQIDKMMKEQRTVLELRDFLDKIYNKVGGEQ--EDLDSLTDEEILKLSGNLRAGVPLA 238 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 TPVFDGA+E +IKELL+L L ++GQ LYDGRTGE+F+RPVTVGYMYM Sbjct: 239 TPVFDGAEEGQIKELLQLAGLSSTGQTVLYDGRTGERFDRPVTVGYMYM 287 >UniRef50_Q5W438 RNA polymerase B subunit (Fragment) n=4 Tax=Cyanobacteria RepID=Q5W438_OSCAG Length = 220 Score = 179 bits (453), Expect = 9e-43, Method: Composition-based stats. Identities = 99/218 (45%), Positives = 127/218 (58%), Gaps = 27/218 (12%) Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 +A + + D EG + D+V R + E + + QVDY VS Q+VSV SLIPFLEHDD Sbjct: 3 VAPGDISTDAEGTILGDIVPVRYRQEFTTTTPMQVDYAAVSPVQIVSVATSLIPFLEHDD 62 Query: 676 ANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV-- 733 ANRALMG+NMQRQAVP LR ++PLVGTG+E A DSG+ V++ G + Y+D SRI+ Sbjct: 63 ANRALMGSNMQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRMDGEISYIDGSRIIVK 122 Query: 734 ----------------IKVNEDEMYPGEA---------GIDIYNLTKYTRSNQNTCINQM 768 I+ +D + G Y L KY RSNQ+TC+NQ Sbjct: 123 SLTVDADSNSSEESFLIREYDDLDLKTKQPSVWKQKYAGYIEYELQKYQRSNQDTCLNQR 182 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 P V G+ V G VLADG ST+ ELALG N+ V +MP Sbjct: 183 PLVYEGDQVVAGQVLADGSSTEGAELALGHNILVTYMP 220 >UniRef50_B7RK98 DNA-directed RNA polymerase, beta subunit n=1 Tax=Roseobacter sp. GAI101 RepID=B7RK98_9RHOB Length = 309 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 115/220 (52%), Positives = 157/220 (71%), Gaps = 4/220 (1%) Query: 105 YEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 + RE VKDIKEQ+V+MG++PLMT NGTFV+NGTERVIVSQ+HRSPGVFFD DKGKT Sbjct: 46 FTREVRRVAVKDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKT 105 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 HSSGK+L+ RIIPYRGSWLDFEFD KD +F RIDRRRKLP T +L AL E I+D + Sbjct: 106 HSSGKLLFACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAY 165 Query: 225 FEKVIFEIRDNKLQM-ELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQL-EKD 280 ++ V + ++ + + P+R+RG ++D+ A G+V EKG+++T R ++QL ++ Sbjct: 166 YDTVTYTLKAGEGWVAPFYPDRVRGTRPTYDLIDAATGEVLFEKGKKVTPRAVKQLVDEG 225 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 V + +P E+I GK A+D I+E TG + E++L+ Sbjct: 226 KVSELVLPFEHIVGKFAARDIINEETGAIYVEPGDEMTLE 265 >UniRef50_A6BAY3 DNA-directed RNA polymerase beta chain (Fragment) n=2 Tax=Gammaproteobacteria RepID=A6BAY3_VIBPA Length = 285 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 170/232 (73%), Positives = 200/232 (86%) Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 L+VRIDRRRKLPA+IILRAL +TE+ILD+FFEKV FE++D L MELVP+RLRGETASF Sbjct: 1 LYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKDQTLLMELVPDRLRGETASF 60 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 DIE+NGKVYVE+GRR+TARHIRQLEKD V IEVPVEYI GKV +KDYI+E+TGE+I A Sbjct: 61 DIESNGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEYIVGKVASKDYINEATGEIIVNA 120 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 N E+SL+ LA LSQ+GHK +E LFTNDLDHGP++SETLR+D T DR+SALVEIYRMMRPG Sbjct: 121 NQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETLRIDSTVDRISALVEIYRMMRPG 180 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 EPPT+EAAE+LFE+LFFSE+RYDLS VGRMKFN S+ RE+ + G I Sbjct: 181 EPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGREDAQEQGTEISLMI 232 >UniRef50_A9SMS1 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SMS1_PHYPA Length = 201 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 89/250 (35%), Gaps = 68/250 (27%) Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 KIV+V + + R GDK H KGVI I ED+P+ ++G +++NP Sbjct: 16 NKIVRVRILLYRFSIVGDKFISWHSQKGVIGAILSQEDLPFIKDGIAPGLIINP------ 69 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 H + + + ++ + Sbjct: 70 ---------HAIPSRITMNHLLEMVISR-------------------------------- 88 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 I F+ A + + + ++Y G T E VT Sbjct: 89 ---------------IDATAFNKAYRSF------EANTAKFSKEKMYYGATRLPIEAKVT 127 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G Y L H DK H+ S G +T+QPL G+++ G +F EME A+GAA Sbjct: 128 IGICYYHTLRHQARDKAHSISKGIIQSLTKQPLEGRSRKGRLQFREMEKDCPIAHGAASM 187 Query: 1287 LQEMLTVKSD 1296 L + L SD Sbjct: 188 LLKKLKNTSD 197 >UniRef50_B9HB57 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HB57_POPTR Length = 260 Score = 162 bits (410), Expect = 8e-38, Method: Composition-based stats. Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 7/171 (4%) Query: 1147 RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG--MPIATPVFDGAKEAEIKELLKLGDL 1204 + L + Q + F E L + + G ATPVF +I + L Sbjct: 90 NGHQLVSLACQTSEYDIFGKNEKAALGKGIACGGSKRCATPVFT-LSVDDIVDQLHRAKF 148 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 G R+Y+GRT E V VG ++ +L + +DK+ +TG +T P+ G Sbjct: 149 SRWGNERVYNGRTSEMVCSLVFVGPIFYQRLIDMAEDKVKFLNTGPVQPLTSHPVAG--- 205 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR-TKMYKNIVDGNHQ 1314 FGG +FGE+E L A+GA+ L E L SD + K + Sbjct: 206 FGGIKFGEIERDCLIAHGASANLHECLFTFSDSSEMHICQKCKKCGQRDPT 256 >UniRef50_Q9EMY3 AMV066 n=2 Tax=Entomopoxvirinae RepID=Q9EMY3_AMEPV Length = 1196 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 124/995 (12%), Positives = 285/995 (28%), Gaps = 150/995 (15%) Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY 215 + K Y + +G + + + I + ++ Sbjct: 64 VIMKITYEGKEDNKKSYLYSSLDNKGFYTYISISISIYRKITSLNNKIEYKIISNKTYSH 123 Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERL------RGETASFDIEANGKVYVEKGRRI 269 T +I DN + P + + IE K + Sbjct: 124 TEIRIPQYIAHGGNTSENDNSITQSNNPGGFFNVSKSLKKMVTTRIEQTYIYPKRKKTQK 183 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID--ESTGELICAANMELSLDLLAKLSQ 327 + + + + + + D + +I + L +D++A + Sbjct: 184 AYTYHLAFISKKPSFMMINEKLNPPQFLTLDIDFNPDKIKCVIDSKKTFLQIDIIALIIA 243 Query: 328 SGHKRIETLF--------TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 + I+ ++ + D + E + + A + +++ Sbjct: 244 LSNDNIDVVYKKISSGFSDDISDSIKILIENTKNILSEYNNDARQYVDKIIEINYIKKYP 303 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 E ++ F + L +GR K+N + ++ L Sbjct: 304 KNEITLQDYFNNIFNDFLPHIGRGKYNEK----------------CMYMISILRQSFVSI 347 Query: 440 GEVD---DIDHLGNRRIRSVGEMAENQFRVGL---VRVERAVKERLSLGDLDTLMPQDMI 493 + D D D+L RRI + ++ EN R + + R + G +++ Sbjct: 348 FQSDVYPDKDNLATRRISTAADIFENIIRTSIDNSFELARDKYKTYISGSGKNNNINNIL 407 Query: 494 NAKP----ISAAVKEFFG-----SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE-RA 543 + I+ A FF +S + + +N I IS G++ E Sbjct: 408 SQVKLLPQITQAFNNFFNMQDTKNSDVVKIGTHSNWAESI----YISNAVERGVSIELTK 463 Query: 544 GFEVRDVHPTHYGRVCPIETPE-GPNIGLINSLSVYAQTNEYGF-----LETPYRKVTDG 597 R +H + + ++TP+ G GL+ L + + Y L R+ + Sbjct: 464 SLTQRKLHASSINVLDMMDTPDHGTKTGLVKRLCISTLISHYPIHIRKQLFEEVREFIEN 523 Query: 598 VVTDEI-------HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 V + ++S I+E +VIA+ E F++DL + G Sbjct: 524 KVKHTLKEDIISGVFISIIDESEHVIAR--IKNSETESFIKDLKYAKISGLFVK------ 575 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 + + + + + + ++ D + + +R P R + G Sbjct: 576 NDIGIEILKFHELDNNKQIYVPTDRYFQIRINVGNKRATQPVFRVEN-----GELAFNKY 630 Query: 711 DSGVTAVAKRGGVVQYVD-ASRIVIKVNEDEMYPGEAGIDIYNLT----------KYTRS 759 + + + +V I+ ++ +M + Y R Sbjct: 631 PNLHAELKESNSYTDFVTKYYDIIEVIDVGQMIYSNMCNTVTEFNSYSLEQRKKYDYVRL 690 Query: 760 NQNTCINQ-------------MPCVSLGEPVERGDVLADGPSTDLGEL------------ 794 + + ++ P + + Sbjct: 691 PNYLYFSYLTSTGCMYDIGKMTGVRGTFGTAQSKHIITGPPDNVMNKYDTCNYLAYPIER 750 Query: 795 ----------------ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 ++G ++ V F +N YN ED ++V++ + + I + + Sbjct: 751 PSITNIPMEISGIARNSIGTHVLVGFFSFN-YNVEDGVIVNKESINRGLLSVISLMSVKN 809 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 DT++ +A+ N SK+ +G+ IG + GD L + PK + Sbjct: 810 ELSDTQINNNNPSAENSN---NNYSKISATGLPSIGTVLVQGDALYRCLKPKFKNDDD-- 864 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 + D S + N V + + G + K + + + Sbjct: 865 -----------NRYIFDQSETLSNTYPAVVERTR---KQGTDLIKIDMLLSSYRRLSVGD 910 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 +++ +Q + + E + L ++ + ++ Sbjct: 911 KIAKSVQKVTVSKIMEEEDMPYNENGERPDIIFNSPSIISRKTLPLYDEVSLCNMFSKIP 970 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 K + E + D ++ K+Y Sbjct: 971 YNDKCDVEYINYPIYTDKSPLDKYNFIKKELKKIY 1005 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 82/447 (18%), Positives = 143/447 (31%), Gaps = 87/447 (19%) Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV-LVAG 982 G +++ + R +L + +L + + + +S+I A L + Sbjct: 784 EDGVIVNKESINR--GLLSVISLMSVKNELSDTQINNNNPSAENSNNNYSKISATGLPSI 841 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 G + D L R + D+ + + R QG DL Sbjct: 842 GTVLVQGDALYRCLKPKFKNDDDNRYIFDQSETLSNT--------YPAVVERTRKQGTDL 893 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 + + L+ RR+ GDK+A K +SKI EDMPY+ENG DI+ N Sbjct: 894 IK-----IDMLLSSYRRLSVGDKIAKSV-QKVTVSKIMEEEDMPYNENGERPDIIFNSPS 947 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 + SR L EV+ F + Y+ DV Sbjct: 948 IISRKT-----------------------LPLYDEVSLCNMFSKIPYNDKCDVEYINYPI 984 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF- 1221 + + ++ I V D E I + LY T + Sbjct: 985 YTDKSPLDKYNFIKKELKKIYNNVTDEELENII-----------YCRQTLYHPYTKKPMT 1033 Query: 1222 ------ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 E +G M +L+ + DK+ R+ G Q P G K G + EME Sbjct: 1034 IKEGDKETKSFMGPMLFCRLSQMSADKISVRNRGRLDKYMQAPSGKKKGGGIKIG-EMES 1092 Query: 1276 WALEAYGAAYTLQEMLTVKSD--------DVNGRTKM-----------------YKNIVD 1310 G+ Y + E+ +SD + G + +N+ Sbjct: 1093 DVFATNGSVYAIHEL---QSDPDEFYLPAHICGNCGIFATYEENIEVKRWKCLQCENLGL 1149 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINI 1337 ++ + + + + + + GI++ Sbjct: 1150 SPEIIKMRLTYATKIFITLLNARGISL 1176 >UniRef50_C5LIK5 DNA-directed RNA polymerase III subunit, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LIK5_9ALVE Length = 186 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM-LKLNHLVDDKMHARSTGSYSL 1253 + +L + + + + G TGE E + VG ++ KL+H+V DK+HARSTG + Sbjct: 42 LLWILMVYPVERLVKEYIISGVTGEALECYIFVGRIHYCQKLDHMVMDKIHARSTGLVNQ 101 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKMYKNIV 1309 +T+QP G+ + F E+ A+ L L + SD V R Sbjct: 102 LTRQPTEGRIKNA---F-ELSND------ASNVLLGRLMLSSDVFTAYVCRRCGSLSESA 151 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P + +L +E++++ I L+ E Sbjct: 152 MSENIVNIRVPFACKLLFQELQAMHICPRLKVE 184 >UniRef50_Q23U98 DNA-directed RNA polymerase, beta subunit family protein n=6 Tax=Tetrahymena thermophila SB210 RepID=Q23U98_TETTH Length = 685 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 85/550 (15%), Positives = 171/550 (31%), Gaps = 92/550 (16%) Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 G+ + S++ +Q T I++ E C ++ +A I + ++ Sbjct: 210 EGFEKIQGMYYSQQQIQNK--TKIYLFEW-CDIQEISNKLVSPSAQILEYNNFLRNSINP 266 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI-----FGEKASDVKDSSLRVPN 922 S I Y +I + + + L I G ++ + Sbjct: 267 STIPYPHCNYAPRNIFAFVQMKRSVQKPYSDNDLRSDINQYLILGSAPLVQTMTTNMINT 326 Query: 923 GV--SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 +GT + + V G +++ + + + +++ Sbjct: 327 NEKFNGTNVCIAVLQEHGYQQEDSITISSRLAKSMYLQCKNGDVKN-------------F 373 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 + EKLD+ R + + ++ L ++ + K E + I + Sbjct: 374 QHDLNYEKLDENGLIREGSVVRKGDIVIGKILILNQEDQIIDRSI--KFEYEEGIILKVK 431 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 + + + + + Q GDK A R G KG I I MPY +GTP+DI++NP Sbjct: 432 QINVDGQQKIIIRFIIPLYPQIGDKYAARCGQKGTIGTIRDENQMPYTNDGTPIDIIINP 491 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 +RM IG +E + G +++ + D ++++ Sbjct: 492 CSFSTRMTIGMNIEQYTSYLVLLTGLFLDSSMFC----------------DKIDRQEEIQ 535 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + +++ G VF A+E + L E Sbjct: 536 RNILGQKKIYYPLTGEFIGYAQVGFVFYAAQEQKAFSKLYAVGFN-------------EA 582 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + V QP G GG R GEME+ + Sbjct: 583 YRNQVF------------------------------QPRDGAKNNGGSRLGEMEMAVFLS 612 Query: 1281 YGAAY----TLQEMLTVK----SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 G + ++ + D N + KN + ++ + S + S Sbjct: 613 AGTTNHSDGFVVDICSHCGLYAHRDQNQQKYYCKNCNGKSEVVKTQIQYSSKHFKDLLNS 672 Query: 1333 LGINIELEDE 1342 LG++I + + Sbjct: 673 LGMSIYFKPK 682 Score = 93.8 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 53/400 (13%), Positives = 129/400 (32%), Gaps = 68/400 (17%) Query: 394 RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + + ++IE + + + ++ K+I + + + D N+R+ Sbjct: 2 KLIEQIIISDILPHCCDSKDIEENYVTKAQFLGLMVYKIICVYLKLNQDESRDSYLNKRV 61 Query: 454 RSVGEMAENQFRVGLVR-VERAVKERL-------------------------SLGDLDTL 487 GE+ +F + + + ++ L SL + Sbjct: 62 VGCGELLYQKFENIYKKNIIQNLRTNLFGNNSMFINKYYQTGYEDNNQSNQKSLDSIRNF 121 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFMD-------QNNPLSEITHKRRISALGPGGLTR 540 M ++N IS ++ + + S M ++ + I R +S P + Sbjct: 122 MVDFVLNKNNISLDMENAIITGKWSTTMTGISKQLPNSSIPARIASLRMVSN-TPIFRNQ 180 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 + + E R ++ G CP+ +P+G + + ++ Y Sbjct: 181 QHSSLETRHINNNQLGFYCPVGSPDGADC------------EGFEKIQGMYYSQQQIQNK 228 Query: 601 DEI---HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 +I + E N +++ + L+ + S +Y + Sbjct: 229 TKIYLFEWCDIQEISNKLVSPSAQILEYNNFLRNSINP-------STIPYPHCNYAPRNI 281 Query: 658 QQVVSVGASLI-PFLEHD---DANRALMGANM---QRQAVPTLRADKPLVGTGMERAVAV 710 V + S+ P+ ++D D N+ L+ + Q + ++ GT + AV Sbjct: 282 FAFVQMKRSVQKPYSDNDLRSDINQYLILGSAPLVQTMTTNMINTNEKFNGTNVCIAVLQ 341 Query: 711 DSGV-----TAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 + G ++ R Y+ +K + ++ + Sbjct: 342 EHGYQQEDSITISSRLAKSMYLQCKNGDVKNFQHDLNYEK 381 >UniRef50_UPI0001924FAA PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001924FAA Length = 304 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 6/109 (5%) Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 T E + +G +Y KL H+V DKMHAR+ G +++T+QP G+++ GG R GEME Sbjct: 18 TREPLSAYIYMGPVYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERD 77 Query: 1277 ALEAYGAAYTLQEMLTVKSD----DVNGRTKM--YKNIVDGNHQMEPGM 1319 L YGA+ + E L + SD DV + + Y + M Sbjct: 78 CLIGYGASMLIVERLMISSDAFEIDVCSKCGLIGYSGCFSKLDSLRLSM 126 >UniRef50_Q1KS34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chlamydophila pneumoniae RepID=Q1KS34_CHLPN Length = 229 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 1/178 (0%) Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-DL 1042 + E ++++ ++ ++L + + E L+ L Y+ E + + I +GD DL Sbjct: 52 FDQETIERIEQEDLVDLLMPNCEMYEVLKGLLSDYETALQRLEINYKTEVEHIREGDADL 111 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 GV++ VKVY+A KR++Q GDKMAGRHGNKGV+SKI P DMPY NG V ++LNPLG Sbjct: 112 DHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLG 171 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 VPSRMN+GQ+LETHLG AAK G + + + ++ + + D Sbjct: 172 VPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQGLPEDGKSFLYD 229 >UniRef50_D1INW9 Whole genome shotgun sequence of line PN40024, scaffold_84.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1INW9_VITVI Length = 1309 Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 75/205 (36%), Gaps = 22/205 (10%) Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 + + + ++++++D K +DD D++GN+R+ G++ F Sbjct: 650 IANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDL 709 Query: 468 LVRVERAVKERLSL-----GDLDTLMPQDMINAKPISAAVKEFFGSSQL----------- 511 + VK+ + I I+ ++ + Sbjct: 710 FKTMISEVKKTIDAILAKPSRSSRFDFSQFIVRDSITVGLERTLSTGNWDVKRFRMHRKG 769 Query: 512 -SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 SQ + + + + + H +IS + R R + P+ +G +CP +TPEG G Sbjct: 770 MSQVVARLSYIGSLGHMTKIS----PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 825 Query: 571 LINSLSVYAQTNEYGFLETPYRKVT 595 L+ +L++ E+P + Sbjct: 826 LVKNLALMTHVTTDEE-ESPLISLV 849 Score = 136 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 47/254 (18%), Positives = 98/254 (38%), Gaps = 49/254 (19%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY 62 + K+ F P+ L V L+ LDSF F++ D ++ R+ I S Sbjct: 28 FPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTD------IKKIVRANDRIVSS 81 Query: 63 -SGNSELQYVSYRLGEPVFD---------VQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 + L++ R+GEP C++ +TY+AP+ V + + Sbjct: 82 VDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTR 141 Query: 113 TVKDIKEQEVYMGEIPLMTDNG------------------------TFVINGTERVIVSQ 148 +++ +V +G +P+M + FV+ GTE+VI+ Q Sbjct: 142 ----VEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQ 197 Query: 149 LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPAT 207 S K + + V + + K+ +++++++ K+P Sbjct: 198 EQLSKNRIIIDTDKKGNINASVTSSTESTKSK----TVIVMEKEKIWLQLNQFTSKIPIM 253 Query: 208 IILRALNYTTEQIL 221 I+++A+ ++Q + Sbjct: 254 IVMKAMGMESDQEV 267 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 54/195 (27%), Gaps = 30/195 (15%) Query: 591 YRKVTDGVVTDEIHYLSAIEE---GNYVIAQAN---SNLDEEGHFVEDLVTCRSKGESSL 644 + + +++ LS E +++I F L R G+ Sbjct: 1113 VLFLCYSLGVEDLELLSGEELHTPNSFLIIFNGLILGKHRRPQRFANALRKLRRAGKIGE 1172 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 F V+ + S G + + D ++ + + ++ + +R + G+ Sbjct: 1173 FVSVFVNEKQ-HCVYIASDGGRVCRPVVIADKGKSRIKEHHMKELIDGVRTFDDFLRDGL 1231 Query: 705 ERAVAVDSGVT-----------------------AVAKRGGVVQYVDASRIVIKVNEDEM 741 + V+ + G++ + ++ + M Sbjct: 1232 IEYLDVNEENNALIALYEADAKPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAM 1291 Query: 742 YPGEAGIDIYNLTKY 756 G YN + Sbjct: 1292 GKQAMGNIAYNQANF 1306 Score = 57.2 bits (136), Expect = 5e-06, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 64/230 (27%), Gaps = 28/230 (12%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F +D K + + ++ + D I + Sbjct: 50 RGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVDPSIYLRFKDVRIGEPSITVDGISEKL 109 Query: 203 KLPATIILRALNYTTEQILDLFFEKV----IFEIRDNKLQMELVPERLRG---------- 248 P T L + Y ++++ + + N + + +P LR Sbjct: 110 N-PHTCRLSDMTYAAPILVNIEYITGSHVQKTRVEKNDVVIGRMPIMLRSCCCVLYKKDE 168 Query: 249 ------------ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 F ++ KV + + + R I +K V + K Sbjct: 169 AELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTESTKS 228 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY 346 +++ L + ++ + G + + + + Y Sbjct: 229 KTVIVMEKEKIWLQLNQFTS-KIPIMIVMKAMGMESDQEVVQMVGRNPRY 277 >UniRef50_C1TQA8 DNA-directed RNA polymerase, beta subunit/140 kD subunit n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQA8_9BACT Length = 1692 Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 86/416 (20%), Positives = 154/416 (37%), Gaps = 67/416 (16%) Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 + G I + + +E + + V + G V+ + Sbjct: 323 LVPGYIEGARGKKIEALEGHLDEAGRFKPYLGVNALVAVMPWKGLTYEDGLVVSRSFAEK 382 Query: 937 DGVEKDKR-ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 ++ K+ +I E++ + K +E L + ++R + LP Sbjct: 383 LKMKPKKQPTGKIYELKNEMLPKAGVKEFSELIEKIEEQVRDLAGKKKKTYIFDKPLPLP 442 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 + + Y + K + D P ++IV + Sbjct: 443 G------------YLAGEKSHSYPWFMPGTLVNVSVKSVIDRKRKDSIPTKVEIVYEFD- 489 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD----ENGT----PVDIVLNPLGVPSRM 1107 + R ++ GDK+ GR+GNKGV++KI + MP +GT VD++++P + R Sbjct: 490 IVRPLRIGDKITGRNGNKGVVTKIEEDDAMPKVVLKGPDGTERVETVDLIISPCSIVGRK 549 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 N+GQILE G+A + +E + + ++R + + L+ Sbjct: 550 NLGQILEMGHGLA------------LKAREWGLIDDEVKRDGLYRGEEWRNTVLTIL--- 594 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 + + L++ KG +GA+E E++ Sbjct: 595 KKLGLSDETDKGSGFPVRYREGAQEKEVRA----------------------------FC 626 Query: 1228 GYMYMLKLNHLVDDKMHARST-GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 GY Y+ +L H VD K+ AR T G + QP G A+ G QR GEME WA+ + G Sbjct: 627 GYQYISRLVHHVDKKLQARGTDGPSNRFIGQPTSGGAKAG-QRLGEMENWAILSRG 681 Score = 59.5 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 51/348 (14%), Positives = 92/348 (26%), Gaps = 56/348 (16%) Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 S L PF + + Q T A + G G+E A + + Sbjct: 235 HKSHKNRLCPFHTPESE-------KIGLQLFMTATAHQGDGGKGVELAEDGEEQS-LFSV 286 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 G+V Y S + + QN + V R Sbjct: 287 AVGMVPYPHHSDGPRLMMGGKNLKQA--------------EQNIEGGEPSLVPGYIEGAR 332 Query: 780 GDVLA--DGPSTDLGEL--ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 G + +G + G LG N VA MPW G +ED ++VS Sbjct: 333 GKKIEALEGHLDEAGRFKPYLGVNALVAVMPWKGLTYEDGLVVSRSFA------------ 380 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 E++ + +L + G V L+ K+ + Sbjct: 381 ------------EKLKMKPKKQPTGKIYELKNEMLPKAG--VKEFSELIEKIEEQVRDLA 426 Query: 896 TPEEKLLRAIFGEKASDV--KDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA--LEIEEM 951 ++K + S P + GT+++V V + ++ Sbjct: 427 GKKKKTYIFDKPLPLPGYLAGEKSHSYPWFMPGTLVNVSVKSVIDRKRKDSIPTKVEIVY 486 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + + G + + + L +E Sbjct: 487 EFDIVRPLRIGDKITGRNGNKGVVTKIEEDDAMPKVVLKGPDGTERVE 534 Score = 59.5 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 11/108 (10%) Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQ------FMDQNNPLSEITHKRRISALGPGG 537 D L ++ + + + F+ S + +D +N L + +R+++ Sbjct: 167 EDKLKKDMLVILCKLESNLNSFWTSRSVRSGLVKALPLDDSNSLRCLELERQVT-----M 221 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 ++ + VR H +H R+CP TPE IGL ++ A + G Sbjct: 222 ASKVKTNGRVRLPHKSHKNRLCPFHTPESEKIGLQLFMTATAHQGDGG 269 >UniRef50_Q2Z143 Putative uncharacterized protein n=1 Tax=Pseudomonas phage EL RepID=Q2Z143_9CAUD Length = 768 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 97/586 (16%), Positives = 178/586 (30%), Gaps = 68/586 (11%) Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA----------- 709 V V ++LI F A R M NM ++VPT A + ++ TG E Sbjct: 57 VGVSSNLILFPHEASAGRLYMAGNMIPKSVPTEGAGERMMVTGYEFEEHYGGTARKVEAP 116 Query: 710 ----VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 V+ + G D + I + DE + D+ L +Y N Sbjct: 117 ANMLVEEIFFVQSLVPGKDT-DDWNSIYVVFKNDE----QNAYDLLELPRYNTHNHYVGF 171 Query: 766 NQMP------CVSLGEPVERGDVLADGP-STDLGELALGQNMRVAFMPWNGYNFEDSILV 818 + G +G V A P ++ GE VA + ED +L+ Sbjct: 172 EYKYDKEKLRKLRKGATFAKGTVFAKSPRISENGEWCFAMPTLVAAYS-DQRTEEDGVLI 230 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 + + H + T + P + + E GIV Sbjct: 231 TRSYAERSACMFKHEFSYEWNEDEWIPLMLYGTDENPQPLPESGDNIREDGIVM------ 284 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 G E L K + V D P V V+ V V + Sbjct: 285 ------GFRRRIKENALVSLTKKSL----REPDLVYDKLFYAP--VDAVVMSVTVRSDRM 332 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 R+ ++Q + + + + +++ + + A + + +P L Sbjct: 333 ---KNRSNNRGTDYIEQHHNAMLDRYEKRQNEMWNNVIRWYEGK-IAANRGEDIPITFDL 388 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 + + + L + E KL+ I + +V VK Sbjct: 389 DTFIRNAYGNYTRNGLGRINPLARVERWDKLKDWNVTIELKE----------RVKGRVK- 437 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 K AG +G+KGV ++ ++ P +GT + + + + R ++E + Sbjct: 438 -----FKYAGLNGDKGVCVRVIEDDEAPTYPDGTRAEFIKDNVPAFRRQIFSLLMELSIN 492 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 + ++ + Q + + Y+ G ++ EE R + Sbjct: 493 YVNMNVQREVRHLRLQGDYEGAFQALMT-FYETGFPEFSELVAHALVTEEEKREHVDDVC 551 Query: 1179 GMPIATPVFDGAKEAEIKELLKL-GDLPTSGQIRLYDGRTGEQFER 1223 I+ V K + + L P Q + GE+ E Sbjct: 552 RRKISVHVVSNTKLYGVNLINALRRQYPYKPQKAIIVNALGERVET 597 >UniRef50_A5AMN9 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A5AMN9_VITVI Length = 496 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 88/286 (30%), Gaps = 14/286 (4%) Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 TK R + + P P+ + +L GQN VA M ++GY+ E Sbjct: 192 TKLCRMDSLLYLLVYPQ----RPLLTTRTIE---LVGYDKLGAGQNATVAVMSYSGYDIE 244 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA--LSKLDESGIV 871 D+I++++ + I +++ + V++ + + VG A + LD+ G+ Sbjct: 245 DAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVGHDAERMQILDDDGLA 304 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 G + DI + K +P + A + + P G + V V Sbjct: 305 APGEIIKPNDIYINKESPIITKGPLISPVG----LPDSAYKPSRQTFKGPEGEASVVDRV 360 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 + + + L + + K S Q G + + L Sbjct: 361 ALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIM 420 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 P + + L K K+ + Sbjct: 421 NPHG-FPRYQRWIVIGFEIVSSLKINLHTSKLILVGKVGKVEEVDS 465 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 14/218 (6%) Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS---GTVIDVQVFTRDGVEKDKRALE 947 G +L + A+ D++D+ + + + G I ++ F+ + A + Sbjct: 221 GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASD 280 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 LK +E +QIL+ + ++ + K + L + + Sbjct: 281 RIVRPLKVGHD--AERMQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPDS 338 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 + + E + R D +K + RR + GDK + Sbjct: 339 AYK------PSRQTFKGPEGEASVVDRVALCSD---KNSNLCIKFLIRHTRRPEVGDKFS 389 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 RHG KGV I ED P+ E G D+++NP G P Sbjct: 390 SRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPR 427 >UniRef50_P41187 DNA-directed RNA polymerase subunit beta (Fragment) n=66 Tax=Alphaproteobacteria RepID=RPOB_LIBAF Length = 146 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 90/137 (65%), Gaps = 6/137 (4%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSVFP 58 + + RK FGK P+++D+P L+ +Q S+ +F+ + GL+AAF+SVFP Sbjct: 9 HCVQWSRGARKFFGKNPEIIDIPDLIEVQKASYDQFLMMNTAPEDRPNEGLQAAFKSVFP 68 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE--GTVKD 116 I+++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + ++KD Sbjct: 69 IKAFSGAAMLEFVSYEFDPPKFDVDDCLRRDLTYAVPLKIILRLIVFDVDEFTGAKSIKD 128 Query: 117 IKEQEVYMGEIPLMTDN 133 IKEQ +YMG++PLMT + Sbjct: 129 IKEQSIYMGDVPLMTKD 145 >UniRef50_UPI0000E4A667 PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide B, partial n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A667 Length = 224 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 73/285 (25%), Gaps = 61/285 (21%) Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E T + G++ Y ++ + M G Y + R + Sbjct: 1 ETTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAY--NQRNRIDTLMY 58 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 + P P+ + + +L GQN VA M ++GY+ ED++++++ V Sbjct: 59 LLAYPMA----PLVKSKTI---DLIGFDKLPAGQNAVVAVMSYSGYDIEDALILNKASVD 111 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 G V +L+ Sbjct: 112 R------------------------------------------------GERVINKQVLL 123 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 K P + D ++ + + V V + + Sbjct: 124 NKSMPVVNMNPLQ----ASPTNQPQQHDYREVPITYKGTADSYIEKVLVTSNPEEAFLFK 179 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 L + + + K S Q GL + + + Sbjct: 180 VLLRQTRRPEIGDKFSSRHGQKGVCGLIVQQEDMPFDERGICPDI 224 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 78/230 (33%), Gaps = 20/230 (8%) Query: 876 EVTGGDIL--VGKVTPKGETQLTPEE-------KLLRAIFGEKASDVKDSSLRVPNGVSG 926 E+ IL + P +P K + D+ + + Sbjct: 6 EIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQRNRIDTLMYLLAYPMA 65 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 ++ + G +K + + D+ + L + +A ++ V Sbjct: 66 PLVKSKTIDLIGFDKLPAGQNAVVAVMSYSGYDIEDALILNKAS--VDRGERVINKQVLL 123 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 K + L+ T++ +Q+ ++ Y + +K+ P Sbjct: 124 NKSMPVVNMNPLQASPTNQPQQHDYREVPITYKGTADSYIEKVLV---------TSNPEE 174 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + KV L RR + GDK + RHG KGV I EDMP+DE G DI Sbjct: 175 AFLFKVLLRQTRRPEIGDKFSSRHGQKGVCGLIVQQEDMPFDERGICPDI 224 >UniRef50_P05472 Probable DNA-directed RNA polymerase n=4 Tax=Saccharomycetaceae RepID=RPOL_KLULA Length = 982 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 11/153 (7%) Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 + LG + G+ Y + E + VG L L H VDDK+ R+ G+ +V Sbjct: 555 FPSRMTLGQIKEMGEKEEYVYIEDTKLENKIIVGKCLYLALRHQVDDKVQFRNGGNIDIV 614 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE-----MLTVKSDDVNGRTKMYKNIV 1309 T+QP+ G+ + GG RFG+ME L GA T++E +K D GR N + Sbjct: 615 TKQPVSGRKRSGGLRFGQMERDILIGLGAWNTIKEIWSIDRSKIKIDSKTGRI----NWI 670 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +ME G + F + L +RSLG +I ++++ Sbjct: 671 RYDKEMEIG--QYFKICLSYMRSLGRDILIKND 701 Score = 86.1 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 69/404 (17%), Positives = 131/404 (32%), Gaps = 45/404 (11%) Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD------DIIDVMKKLI 433 + E + FS+DR LS ++ L + DII Sbjct: 84 NNIKIKEKIHFSKDRAYLSDDSIIQIKDMFNMTIKNNKNTLKWNLPLNWSDIIKYSDHKK 143 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQ--FRVGL-VRVERAVKERLSLG-----DLD 485 ++ N +D + + I++ ++ F L +R E + RL D+ Sbjct: 144 ELENHLKIIDSFNKKAEKPIKNEIDLISLCYMFECWLGLREEPRLYYRLVTPGELIHDII 203 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + + + VK +S+ M N + ++ RRI+ +R A Sbjct: 204 KEKRSVIKCFRTNTWTVKNIRNVFCVSEDMKHYNKIGDLESIRRITI----PSSRSNAPM 259 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 + R V ++CPI+T +G G I L A+ K +G+ T Sbjct: 260 KERRVEDNDKYKICPIQTSDGSLCGTITYLCKDAKITTK-IDTIIVEKADNGLHTF---- 314 Query: 606 LSAIEEGNYVIAQANSNLDEEG-HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 N+ L + E + C K + ++ + + S Sbjct: 315 ------------FNNTYLGKVKVKTKESDIYCIDKICYIFGNIGRI----IKGNYLCSYT 358 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 L+ + ++ R++ NM +QA+ + + + D G Sbjct: 359 GELLDYKNYNPPIRSMFVCNMIKQAITGDSVYSGDILHNTKSLINGDLGHKLEIAIMPWK 418 Query: 725 QYVDASRIVIKVNEDEMYPGEAGI-----DIYNLTKYTRSNQNT 763 ++ IVI +++ + I D+ L Y NQN Sbjct: 419 KFNIEDAIVISNKVSKLFRSKRTIIHRENDVKILNVYVNINQNI 462 >UniRef50_A9U5J3 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9U5J3_PHYPA Length = 499 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 95/300 (31%), Gaps = 39/300 (13%) Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI 616 +CP E EGP+I ++ LS Y V V + + L + ++ Sbjct: 164 YICPCEILEGPDISVVKYLSSTCTITPY---------VDPDDVLNHLGILPQGNDALFIN 214 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 + +E + L + KGE+ +F V Y + + + L Sbjct: 215 GLFVTRTSKE-SVLRSLKAYKRKGEAFMFVS--VYYSSDKKIHIQTTRSRYNRPLLICTN 271 Query: 677 NRALMGAN---------MQRQAVPTLRADKPLVGTGMERAVAVDSGVTA-----VAKRGG 722 + +N + + + + T + + V Sbjct: 272 GSTPVYSNTTVDDIHKAGMLEMIDATEQMQCFIATTHDSICNQHTHVEIHPSFMFGLFAS 331 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 + Y + ++ V + M + ++ +T ++ Q P Sbjct: 332 MTPYANFNQSSRIVFQSAMSKQAMPLTLHIMTSIVSDSKILTYAQKPK------------ 379 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 ++ + N+ +A + + GYN EDS+L ++ + F++I + + + Sbjct: 380 -CTTIISNTIKEYNRVNVVIAVLSYFGYNQEDSLLFNKSSIGRGLFSSIKYEVVEIIENK 438 >UniRef50_Q48975 DNA-directed RNA polymerase (Beta) (Fragment) n=1 Tax=Mycoplasma capricolum RepID=Q48975_MYCCA Length = 345 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 28/240 (11%) Query: 95 PLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPG 154 P +++ ++ ++ + V K EV++G+ PLMT+ GTF+ING+++VIVSQL RSPG Sbjct: 107 PDLIQIDIIEDKKTSLICNVSIYKSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPG 166 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN-------LFVRIDRRRKLPAT 207 +F+ + + +G+++Y A IIP RG+WL++E D K L+V+ID+ RK AT Sbjct: 167 AYFNKELNRK--TGEMIYFADIIPSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTAT 224 Query: 208 IILRALNYTTEQILDLFFEKV-------------IFEIRDNKLQMELVPERLRGETASFD 254 +L A + + IL++F F+I E+ + +GETA+ + Sbjct: 225 SLLLAFGISKDDILNIFDNDEVLVETLQQDSIIGDFKIDWLNQVQEIYKKIRQGETATSE 284 Query: 255 --IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + +K + + R K + + I KV+A+D +D + LI Sbjct: 285 GASKFINSILFDKRKYDLTKAGRFKLKQKLSI----KNRILNKVIAEDILDANNNVLIAK 340 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 63/379 (16%), Positives = 123/379 (32%), Gaps = 65/379 (17%) Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L ++ EP V++ + Y AP+ L+L + + E + + +++ Sbjct: 14 LTLENWGFKEPRLSVRQAREESKIYDAPIYANLKLSVNKTEEIQKEFDGVDQEDTL---- 69 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 +V+ L G + K S + I Sbjct: 70 ---------------KVLTHWLEEKTGN--GNITFKQQSQNSYFFEITIKKSE------- 105 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 D + + I +K + + ++ + P L Sbjct: 106 --KPDLIQIDIIEDKKTSLIC-------------------NVSIYKSGEVFLGDFP--LM 142 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 E +F I + KV V + R + + + + I + +Y +S Sbjct: 143 TEAGTFIINGSQKVIVSQLVRSPGAYFNKELNRKTGEMIYFADIIPSRGTWLEYETDSKK 202 Query: 308 E-------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN--- 357 L + + L G + + L N D+ + ETL+ D Sbjct: 203 IGSDAINPLYVKIDKSRKTTATSLLLAFGISKDDIL--NIFDNDEVLVETLQQDSIIGDF 260 Query: 358 --DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 D L+ + EIY+ +R GE T E A ++ F + +YDL+ GR K + L + Sbjct: 261 KIDWLNQVQEIYKKIRQGETATSEGASKFINSILFDKRKYDLTKAGRFKLKQKLSIKNRI 320 Query: 416 GSGILSKDDIIDVMKKLID 434 + ++++D + LI Sbjct: 321 LNKVIAEDILDANNNVLIA 339 >UniRef50_UPI0001926473 PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2 n=1 Tax=Hydra magnipapillata RepID=UPI0001926473 Length = 534 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 57/415 (13%), Positives = 127/415 (30%), Gaps = 48/415 (11%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 KR+ + P L V L+ +DSF FI + + + L Sbjct: 8 KRVEDKWKLVPAFLKVKGLVKQHIDSFNYFINTEIKDIVKANERVQ-----TDADPVWYL 62 Query: 69 QYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 +Y+ +G P + EC++R +TYSAP+ V + + + Sbjct: 63 KYLDVHVGAPDVEESFNVSRPVAPHECRLRDLTYSAPITVDIEYT--------RGNQRVV 114 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLYNA 174 + +G +P+M + V+ G + +++L+ P G F K + L Sbjct: 115 RNSLPIGRMPIMLRSSNCVLAGKNEIELAKLNECPIDPGGYFVVRGSEKVLLIQEQLSKN 174 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+I + KD + + ++ L + V + Sbjct: 175 RMIVELDTK---NHQEKDAEIAELSEK--------VKRLEENNANLPPSSSPAVCYSQIA 223 Query: 235 NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 +L E I+ + + ++ I L +IE Sbjct: 224 KQLAKPGS------ELYDASIKVSKSHEILSSKKSKNVVIFGLPNSQKTIIEDRKTDDRN 277 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 V + + +E + L+ S+ F N++ ++ + Sbjct: 278 MVNKLIRLLNRRIIIKSTFRLESKVPLVNNASKPLVVE----FENEVAQNEMLAAARELS 333 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 ++ +++ E + ++ ++ ++ V N+ + Sbjct: 334 TIEAYKKFKLDSIKIIDGYELYQADRNRIGGVAIYVNKRLTNIEIVNVHLNNKEI 388 >UniRef50_A9SWU4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SWU4_PHYPA Length = 440 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 104/309 (33%), Gaps = 24/309 (7%) Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 +E + + LS + + + + L + + + Sbjct: 122 QERNYTFRYLARKEKYELQLSKCHCKIYMVNGVLKVSLSHNNLVNIFAVMKVLRKTIASA 181 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGL--VRVERAVKERLSLGDLDTLMPQDMINA 495 + + IDH + + G + E+Q + + + L+ D D Q Sbjct: 182 KREILSWIDHP--KEVL--GLLLESQLDATTLDSNIIHSTERNLATLDDDKKDIQSNFKT 237 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 I + +SQ + + L ++H RR+ ++ERA +R +H T Sbjct: 238 G-IWKGYTQGDNKRTISQMLSSKSILDSLSHVRRVEI-----SSKERASAIMRQIHLTQL 291 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 G +CP ETPEGP++G + LS PY V V + + L + ++ Sbjct: 292 GYICPCETPEGPDVGAVKYLSSTCTI-------IPY--VDPDDVLNYLGVLPQENDALFI 342 Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 + ++ + + + KGE +F + Y + + L Sbjct: 343 NRLFIARTSKDN-ILRSIKAYKRKGEVFMFVS--IYYSSDKEMHIQTTRGRYSRPLLICT 399 Query: 676 ANRALMGAN 684 A + +N Sbjct: 400 NESAPVCSN 408 >UniRef50_B3RKF6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RKF6_TRIAD Length = 224 Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 56/214 (26%) Query: 13 KDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGNSE 67 KD+G+ + + + ++SF + GL AA + + + + Sbjct: 19 KDYGRLAATQNKYLQEFVQPHIESFNFLLRD------GLSAAVKDIRQEELQLNDGRRIS 72 Query: 68 LQYVSYRLGEPV------------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 + + +G+P EC+ G TY A +V + + + Sbjct: 73 IYFKDALIGKPTVSEAGSYSSNTILYPAECRELGSTYGANFQVTINWDVDGETSGSLG-- 130 Query: 116 DIKEQEVYMGEIPLMTD------------------------NGTFVINGTERVIVSQLHR 151 + +G IP+M G F++NG E+VI + Sbjct: 131 ------IPLGRIPMMVKCKNCSLYNLTPEQLVAHHDEAEEAGGYFIVNGLEKVIRMIVLP 184 Query: 152 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 + + + + ++ I R D Sbjct: 185 RRN-YPMAISRPSWKNIGASFSEYGIIIRCVRRD 217 >UniRef50_UPI0001742D24 DNA-directed RNA polymerase beta chain n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742D24 Length = 107 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 43/98 (43%), Positives = 63/98 (64%), Gaps = 10/98 (10%) Query: 66 SELQYVSYRL---GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 +L+Y+ Y + EP+ D EC+ RG TYS L+V+L+L +I+E V Sbjct: 1 MKLEYLWYEIHDNDEPLNDELECKKRGKTYSGQLKVRLKLTN-------KRTGEIQETLV 53 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD 160 + G+IPLMTD TF++NG ERV++SQLHRSPG+ F+ + Sbjct: 54 HFGDIPLMTDKATFIVNGAERVVISQLHRSPGITFNKE 91 >UniRef50_D2J6W7 Putative uncharacterized protein n=1 Tax=Staphylococcus sp. CDC3 RepID=D2J6W7_9STAP Length = 1807 Score = 86.5 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 60/370 (16%), Positives = 118/370 (31%), Gaps = 38/370 (10%) Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK-----ASDVKDSSLRVPNGVSGTVID 930 ++ GD+ +++ K + + + I ++ D+S NG T D Sbjct: 602 KLYHGDVYGMRISDKNKEKENIVKTYQNRIKFDESVLDLNPSELDASFDDENGEEYTGED 661 Query: 931 VQV-FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG-----LFSRIRAVLVAGGV 984 F ++ + + ++ Q+L G + + L+ + Sbjct: 662 KSYRFNIRELDGIFDRSLSSDGANLGLVRYFNKGNQVLNTGEVVQTTDGIVGSALIKDNL 721 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD----ELKHEFEKKLEAKRRKITQGD 1040 + D R Q Y E +K ++ I G Sbjct: 722 PFTEGDPGDRSMMAGNQYMKARNVEQANVAYITYKGYTFEDGSVISEKFAREQGAIVNGY 781 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 D + ++ GDK++ HGNK IS + D + EN +D+++NP Sbjct: 782 DENGDPI-----------PLEVGDKISDLHGNKSTISYVASENDDVFKEN-PNLDVIMNP 829 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 VPSR+N G +LE + E + + Sbjct: 830 HSVPSRLNTGLVLEMQ--------NSGEETPVYHNGERIASSAPLNVVITDITARDKTKT 881 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL---GDLPTSGQIRLYDGRT 1217 S DE + ++LR+G + A E+ +K ++ + +++ Y T Sbjct: 882 YSDEYDENGQLVEKSLREGRLFGNQLAWVANGLELDNTMKEVYGSNIKSFEKLKAYLNVT 941 Query: 1218 GEQFERPVTV 1227 G + + Sbjct: 942 GLDIDEDTAI 951 >UniRef50_UPI0001924FA9 PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924FA9 Length = 164 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 Y ++ + + + K+ + ++K+ + RR + GDK + RHG KG Sbjct: 18 TTDYKDVPTSYHGPIPSYVEKVLISSTMED--AFLIKMLMRQTRRPEIGDKFSSRHGQKG 75 Query: 1075 VISKINPIEDMPYDENGTPVDIVLN 1099 V I EDMP+ + G DIV Sbjct: 76 VCGLIVNQEDMPFTDLGICPDIVTF 100 >UniRef50_B9RDB2 DNA-directed RNA polymerase beta chain, putative n=1 Tax=Ricinus communis RepID=B9RDB2_RICCO Length = 173 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 2/96 (2%) Query: 618 QANSNLDEEGHFV--EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 V E + R + E + +QV + Q S+GASLIPF+EH+D Sbjct: 72 WGGGPAYGVKSIVQEEQVAPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHND 131 Query: 676 ANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 AN+ALM +NMQRQAVP R++K +VGTG+ER VA++ Sbjct: 132 ANQALMSSNMQRQAVPLSRSEKCIVGTGLERQVALE 167 >UniRef50_P90631 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Moneuplotes crassus RepID=P90631_EUPCR Length = 205 Score = 83.0 bits (203), Expect = 7e-14, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 51/205 (24%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI- 59 M +++ + L+S Q+ SF +F+ + + V Sbjct: 1 MDPDNSKEITQEDAWALIKAYFQQHGLVSQQISSFDRFLSYTIQDIVAENSIMSIVPEKQ 60 Query: 60 ---------------QSYSGNSELQYVSYRL-GEPVFD----------VQECQIRGVTYS 93 Q E++ ++ +P F E ++R +TY Sbjct: 61 YAPGVRLYLTLGNENQDRDLRYEIELGQVKVNEKPRFKEYDDKYNVIFPNEARLRNLTYQ 120 Query: 94 APLRVKL--RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG----------------- 134 + V++ R + + E ++ KE+EVY+G++P+M + Sbjct: 121 TSVYVEVTKRDKVTNSKGVEEVLEKRKEKEVYIGKVPVMIKSAFCSLNRIENEYEMKECF 180 Query: 135 -----TFVINGTERVIVSQLHRSPG 154 F+ING+E+V+V+ + Sbjct: 181 FDQGGYFIINGSEKVLVAHEKMATK 205 >UniRef50_C0SZK4 DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Borrelia burgdorferi 29805 RepID=C0SZK4_BORBU Length = 115 Score = 83.0 bits (203), Expect = 8e-14, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 8/109 (7%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG------QYGLEAAFRSVFPIQSY 62 KR+ G+ ++LD+P L+ IQL+S++KF++ D GLE+ FR++FPI+S Sbjct: 3 KRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKSKKPLLNEGLESVFRNIFPIKSG 62 Query: 63 SGNSELQYVSYRLGEPV--FDVQECQIRGVTYSAPLRVKLRLVIYEREA 109 +G+ L+Y Y + F +EC+ +G +Y A L+V+L L Sbjct: 63 NGDVALEYERYYIENDALNFTEKECKRKGQSYEAVLKVRLNLQFLTTGE 111 >UniRef50_C5Y5J9 Putative uncharacterized protein Sb05g004163 (Fragment) n=1 Tax=Sorghum bicolor RepID=C5Y5J9_SORBI Length = 79 Score = 81.5 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ-QPLGGKAQF 1265 G + +GRTGE+ + V + + +L H+ +DK+ +T +T QP + Sbjct: 3 MGSENILNGRTGERMQSLVFMDPTFYQRLIHMSEDKVKFHNTEPVQPLTSLQPAADRKGL 62 Query: 1266 GGQRFGEMEVWALEA 1280 E W + A Sbjct: 63 VELNL---EKWRVIA 74 >UniRef50_D1I1U7 Whole genome shotgun sequence of line PN40024, scaffold_79.assembly12x (Fragment) n=2 Tax=core eudicotyledons RepID=D1I1U7_VITVI Length = 191 Score = 74.1 bits (180), Expect = 4e-11, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 68/154 (44%), Gaps = 6/154 (3%) Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 ++NG R++++Q+ +SPG+++ S+ +G +Y I+ G L+ E D K ++ Sbjct: 34 IVNGLYRIVINQILQSPGIYYRSELD---HNGISVYTGTIVSDWGGRLELEIDRKARIWS 90 Query: 197 RIDRRRKLPATIILRALNYTTEQILD---LFFEKVIFEIRDNKLQMELVPERLRGETASF 253 + R++K+ ++ A+ +IL+ + F K ++ L + F Sbjct: 91 HVSRKQKISILVLSSAMGSNLREILENVCYLEIFLSFLNDKEKKEIGLKESAILEFYQQF 150 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 V+ E + + + + K VK++ Sbjct: 151 ACVGGDLVFSESLCKSSYYVMNENFKRVVKVVNK 184 >UniRef50_C7AA72 RpoB (Fragment) n=36 Tax=Alphaproteobacteria RepID=C7AA72_9BRAD Length = 134 Score = 70.7 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS--FDIEANGKV 261 LP T ++ AL EQIL F++K+I++ ++ R RG + GKV Sbjct: 1 LPVTSLMFALGLDGEQILATFYKKLIYKRIKEGWRVPFDANRFRGYSTVNDLIDADTGKV 60 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 +E G+++T R RQL++ +K + + E + G +A+D ++ TGE+ A E++ L Sbjct: 61 VLEAGKKLTVRAARQLQEKGLKALRMSDEELLGNYIAEDLVNPKTGEIYAEAGEEITDKL 120 Query: 322 LAKLSQSGHKRI 333 L++ G+K + Sbjct: 121 FKVLNEQGYKDL 132 >UniRef50_Q36704 (S1 sensitive region) (Fragment) n=4 Tax=Embryophyta RepID=Q36704_9ASTR Length = 98 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 13/109 (11%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEP 78 + +P IQ + F +FI+Q GL I+ + + ++ Y+L EP Sbjct: 1 MSTIPGFNQIQFEGFCRFIDQ------GLAEELSKFPKIEDTNQEIDFEFFLERYQLVEP 54 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + ++ +TYS+ L V RL+ + I+EQ + +G+I Sbjct: 55 LIKERDAVYESLTYSSELYVSARLIWKNDRR-----RYIQEQTILIGKI 98 >UniRef50_Q7SXI3 Zgc:66298 protein n=2 Tax=Danio rerio RepID=Q7SXI3_DANRE Length = 150 Score = 62.6 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 6/44 (13%), Positives = 16/44 (36%) Query: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P F + E+ ++ I I+L+ + Sbjct: 107 CTYKTICLLCNKSDSIETVSVPYVFKYFVAELAAMNIKIKLDVK 150 Score = 46.4 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 21/102 (20%) Query: 6 TEKKRIRKDFGKRPQVLDVP--YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS-- 61 + K FG + VP L+ ++SF + GL ++ P++ Sbjct: 14 SLKHLTEAGFGVPKEKQSVPVQELVKAHIESFDQ------AVTDGLCRVVEAIPPMEFLY 67 Query: 62 YSGNSELQYVSYRLGEPVFD-----------VQECQIRGVTY 92 L +V + P EC+ R TY Sbjct: 68 KGDRISLSFVEAIIHTPSVSKGGISRDLRVFPAECRGRRCTY 109 >UniRef50_UPI00016982A9 DNA-directed RNA polymerase subunit beta n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016982A9 Length = 64 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 27/45 (60%), Positives = 36/45 (80%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG 45 M YS+TEKKRIRKDFGKR +LDVP+LL+ Q++SF+ F++Q Sbjct: 1 MAYSFTEKKRIRKDFGKRTSILDVPFLLATQIESFRDFLQQGWVP 45 >UniRef50_Q8KRK0 RpoB protein (Fragment) n=1 Tax=Pediococcus pentosaceus RepID=Q8KRK0_PEDPE Length = 66 Score = 60.3 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 51/55 (92%), Positives = 54/55 (98%) Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 AIEEGN+VIAQANSNLD++G FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS Sbjct: 1 AIEEGNFVIAQANSNLDDDGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 55 >UniRef50_B5Z8J4 DNA-directed RNA polymerase, beta subunit n=1 Tax=Helicobacter pylori G27 RepID=B5Z8J4_HELPG Length = 67 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF 57 M K R+R DF K P L+VP LL +Q DS+ F+ + G++ Sbjct: 1 MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGMKRFLNPFS 57 >UniRef50_B9U5W9 RNA polymerase beta subunit (Fragment) n=21 Tax=Acinetobacter RepID=B9U5W9_9GAMM Length = 116 Score = 50.3 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 2/115 (1%) Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 + E ++A ++ L + + + + L L LE+ TDE Sbjct: 3 KEEYKIFEEAARERVIRLLKGQESNGG--GSTKRGDKLVEDMLSGLELVDLLEIQPTDEA 60 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 +L Q+ E E ++K K+RK++ GD+L GVLK+VKVYLAVKRRIQ Sbjct: 61 IAERLSQIQVFLKEKSAEIDEKFAEKKRKLSTGDELTTGVLKVVKVYLAVKRRIQ 115 >UniRef50_Q23DP4 Myosin n=2 Tax=Tetrahymena thermophila RepID=Q23DP4_TETTH Length = 1927 Score = 50.3 bits (118), Expect = 6e-04, Method: Composition-based stats. Identities = 62/578 (10%), Positives = 173/578 (29%), Gaps = 67/578 (11%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI---EQDPEGQYGLEAAFRSVF 57 M ++++ + + K +LD+ Q + F++F + Q + F++ Sbjct: 463 MPKDISKQQILSSNLYKSIGLLDIYGFEVFQKNGFEQFFINYTNERLHQLYISYVFKAE- 521 Query: 58 PIQSYSGNSELQYVSYRLG---------------EP----VFDVQECQIRGVTYSAPLRV 98 + E + +P +C+ +G A L Sbjct: 522 ELTFKEERLEQYFKKLDFKDNQDVIDVLDNNDRQKPLGIFKLLEDKCKQKGTIIDAKLLS 581 Query: 99 KLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVI--VSQLHRSPGVF 156 ++ ++E + + + + +I+ + V + Sbjct: 582 DIQKQHGDKEIYIKNPNYKFKNPKKIND------STFIIIHTAKEVEYDIKGFIEKNKDE 635 Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT 216 + ++ ++ ++II + L E + +R ++ + L + Sbjct: 636 VNEGLINKINNSQIRGISQIISEKDKELLDESTASQQVKMRQISQKFISEMSFLMDVLMQ 695 Query: 217 TE-QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 Q + + + L R G S +I + ++ Sbjct: 696 CNVQFIRCIKPNEEKKPQLFNQGFTLNQIRYLGVLESINIRKQSYPIRQSYESFFNKYSL 755 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYID--ESTGELICAANMELSLDLLAKLSQ------ 327 + ++ + + ++ K++ + + ++L ++ Sbjct: 756 LMLNKLNIQDQINKKSLVEELFRKNFSSIPKENRLFGVTKIFFKNYEVLQQIEDIYNKEI 815 Query: 328 -------SGHKRIETLFTNDLDHGPYISETL--RVDPTNDRLSALVEIYRMMRPGEPP-- 376 + I+ LF I ++ + + A+ I ++ Sbjct: 816 SNIRNLVLRIESIQLLFLLKRKRASEIIQSYCFQKTAISYYEQAMENIKKIQFHWRAAYQ 875 Query: 377 -TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK-LID 434 RE +N + + L+ + F RS+ + ++ + + K L + Sbjct: 876 RLREVRSKRIKNTYI--IKEVLNKAWQKIFTRSVTTIVEKTKKLVRCYYLKQMFSKQLYE 933 Query: 435 IRNGKGEVDDIDHL-GN------RRIRSVGEMAENQFR-VGLVRVERAVKERLSLGDLDT 486 IR K V + L GN +R + + + + + L + + +++ + + + Sbjct: 934 IRTKKAAVIFLKLLKGNFVRKRIKRFNLAAQKIQAKVKQIWLTELYQKLRKAIII--IQR 991 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 +I + + EF L Q + + E+ Sbjct: 992 NARIFIIRKRERNQRNAEFL--GPLEQNLKRIRISEEL 1027 >UniRef50_Q9XDQ2 ORF12 protein n=2 Tax=cellular organisms RepID=Q9XDQ2_AGGAC Length = 1416 Score = 46.4 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 45/372 (12%), Positives = 95/372 (25%), Gaps = 30/372 (8%) Query: 149 LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATI 208 + T S V Y+ I + + + K I++ L Sbjct: 248 YIEITNDILNYKVNFTELSNMVEYSN-INYNMYNLVKYIIKNKFINRNEINKNTLLNIIT 306 Query: 209 ILRALNYTT---EQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 R + LF K +N + +++ + A F+I +N Sbjct: 307 RQRNFYIDKIFGDGFCQLFLNKENHFSEENSFKKKIINNSIV--DAFFNINSNEVSEFRF 364 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 L + + + ++ I G ++ K Sbjct: 365 DPSNNPALFSGL--EIIIHYKDNSRENIYNYSYENLIKLDNGNFFSLSSDPRLFFKSKKN 422 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 + N+ + I + T +R +E G+ + E Sbjct: 423 KFITLINVRYYLYNNNLYEKIIQNYISKYKTIERNDLQLENISSRYEGKIKSLENKIHFN 482 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG-----KG 440 E RY + + + + + II L + N + Sbjct: 483 LKKHEDELRYLKNKINFNLKEYEINLLVERNKIEILNNKIISKNNILRKLYNKYRKNVRS 542 Query: 441 EVDDIDHLGNRRIRSVGEM-----------------AENQFRVGLVRVERAVKERLSLGD 483 + D I L N+R+ + + ++ +K+ + D Sbjct: 543 QNDYIVSLSNQRLVLEKNLSEIINDREKKIRDLDAILTGIMQSRGYKLLMKIKKIFNKTD 602 Query: 484 LDTLMPQDMINA 495 D L + N+ Sbjct: 603 YDILRKSGLFNS 614 >UniRef50_B1BVG8 Putative uncharacterized protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BVG8_CLOPE Length = 1232 Score = 45.6 bits (106), Expect = 0.015, Method: Composition-based stats. Identities = 67/538 (12%), Positives = 148/538 (27%), Gaps = 41/538 (7%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRS-------VFPIQSYSGN 65 F K + L + DS + F + + + A + ++ + Sbjct: 267 DRFNKIDIFTKLRDLNRLLNDSEEVFSRKKHKRKIKFVYAIKDSIFVDGNNLSKKNNADL 326 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVI-YEREAPEGTVKDIKEQEVYM 124 E++Y +Y L + E + + Y P+ + Y +IK ++V++ Sbjct: 327 GEIKYENYILD---LSIGENRTKFFDYIIPVIPYMDANNSYNDLQKRFNDNNIKIEDVFI 383 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 +I + + + N ++ + ++ + K +Y Sbjct: 384 SDISVFITDKRLLTNTVNEFLLYKDKLKHLKEYEYKYLFSIILYKNIYPIDF-------- 435 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 ++ I +K I L +N E+I + + +D+ + + Sbjct: 436 -LNLTNQEGFLYEIINNKKNYIQIELEKINSKIEEIENKIGDLNNKITQDDDDLLSFILG 494 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 L I+ + + + ++ V I + +++ Sbjct: 495 LLA-RKGYSRIDNKDFHNISLDDIKNIMNKEENDRILANSYYEYVYDIFTDEIKSKILEK 553 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 + + L + K + +DL I+ + L Sbjct: 554 ENLIENNEFSEKNKLTKELLNLKHKRKILLEKTLSDLILDSSINIDFGKNKLIKVLLMKG 613 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 I RE S E F + N + LS + Sbjct: 614 YINERYTNYISYFREGEISFKELEFIQSVISKTFMPINYELNNIDKIIKRIDIKDLSDEY 673 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL----- 479 I+ + ++D+ + + D + + + + F L V E L Sbjct: 674 IL-NLYLIVDLILDETKFDSLKYDKILSQFNEINYFKLNFLERLSEFNLEVYEMLIKKIS 732 Query: 480 --------------SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 D L + IN I + + SS + + N LS Sbjct: 733 INNKNLFKELCFNNKTNDFINLNFKIFINQLSIDELINQNINSSVEKFILSKENILSF 790 >UniRef50_A8I790 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8I790_CHLRE Length = 116 Score = 45.2 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN----SELQYVSYRLG 76 L+ L+ + SF FI GL+ S+ P++ + + R+ Sbjct: 36 PLEYQKLVEPHVASFNYFI------GEGLQNVVESLQPVEVTHPTTGLVTRIWLSDVRVE 89 Query: 77 EPVFDVQE 84 +P+ +E Sbjct: 90 KPLVAAKE 97 >UniRef50_Q8I348 Selenide water dikinase, putative n=2 Tax=Plasmodium RepID=Q8I348_PLAF7 Length = 1193 Score = 44.9 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 25/274 (9%), Positives = 78/274 (28%), Gaps = 5/274 (1%) Query: 154 GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAL 213 ++ DK ++Y + I D K+ + + + +P Sbjct: 129 NIYTYKDKNLFFYYTHIIYLSLIKSQNNK----ITDKKEYMKWKTFFFKNIPLEKFYNFC 184 Query: 214 NYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH 273 +Y + + ++ F+I N + ++ + ++ N +++ + + Sbjct: 185 SYNDKYVENIIDIYNFFDILLNNNIPYYDFKIVQEKVKILNVLKNKNPLIKEIVKNENYN 244 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 ++ + DE+ E+ +L + Sbjct: 245 FHFSNNEEKDETKQTNNSSDNIFQFLILCDENNYNFGKNLYYEIFENLHKISISVKIIYV 304 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED 393 + + I++T+ + + + M+ + + + + SED Sbjct: 305 HIINEEKCNKKENINDTISNNNIKNNIK-NNIYNNNMKCSKFCSYFVQVREIKQVKKSED 363 Query: 394 RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 + + + ++ +E L I Sbjct: 364 KLFIEYIDMNNKLSTIFFDECINITNLKYPSYIY 397 >UniRef50_UPI0001924A1B PREDICTED: similar to DNA-dependent RNA polymerase II RPB140 n=1 Tax=Hydra magnipapillata RepID=UPI0001924A1B Length = 332 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 3/95 (3%) Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 + D++ KL+ + + VD+ D +R+ ++ E+ E Sbjct: 85 PNTPYREKACYLEDMINKLLKVELSRAPVDNRDAYTKKRVDNIRELFEEIMVQQYKNNMN 144 Query: 474 AVKERLSL---GDLDTLMPQDMINAKPISAAVKEF 505 ++ + + D P ++I+ + + F Sbjct: 145 ECSKQFTARMGDNSDAAEPYNVIHQFKAATFEQGF 179 >UniRef50_UPI00006CCB8E hypothetical protein TTHERM_00437410 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CCB8E Length = 1075 Score = 44.9 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 44/340 (12%), Positives = 113/340 (33%), Gaps = 27/340 (7%) Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 Y T + L+ E ++ +++E ++L + D + + R Sbjct: 344 YGTIEYKKLYSELFEDKLIKKNIKLEKEKQQLISQRKYLDEKEKNLFAAYQNHLQNNRSS 403 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE 334 ++ L+ + + K + E I E LL ++ +KR Sbjct: 404 KETLNKLRVLLNINSQKRKVKNEEIKIVAEEYDNQIKKMESENVSSLLKQIEGKRNKRAT 463 Query: 335 TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDR 394 + N + I + ++D D + E+ ++ + +A + Sbjct: 464 LMAVNPFNDQIEILQEKKLDALADIKIQIAELDDELKQIQEEVEQAQKDYQNAK------ 517 Query: 395 YDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIR 454 + + + L++ + + ++ ++ KL++I+ D+L + I Sbjct: 518 -EKKNEVKFLMKQHFLQQLSKEVNEKNPKSLVWIVVKLLNIKEQITYNIFPDYLEEKNI- 575 Query: 455 SVGEMAENQFRVGLVRVE-RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 QF + + +E + +++ + ++ + ++ F SS Q Sbjct: 576 --------QFLIQMANLEIQKNEKQAFMKNMQNSQRFHNLQQNYQQKMMQ--FQSSGKKQ 625 Query: 514 FMDQNNPLSEITHKRRISALGPG---GLTRERAGFEVRDV 550 +NN S +T +++ P GL ++ Sbjct: 626 ---RNN--SSLTAFSSSTSINPSLNTGLESTNKLSYIKKP 660 >UniRef50_Q7RF77 Putative uncharacterized protein PY04831 n=6 Tax=Plasmodium (Vinckeia) RepID=Q7RF77_PLAYO Length = 2140 Score = 44.1 bits (102), Expect = 0.044, Method: Composition-based stats. Identities = 54/371 (14%), Positives = 116/371 (31%), Gaps = 39/371 (10%) Query: 139 NGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRI 198 NG + S +++ + + + K +Y I + + K Sbjct: 1400 NGKNPKLSSLYINLLILYYVFSQKGKYKNQKRIYYNCIKTDISNC--YNIINKLLCIFYY 1457 Query: 199 DRRRKLPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 + L L+ L + ++I +LF K + D + + ++ + DI Sbjct: 1458 NDNLNLYYHKYLKYLCFKIFKKIYNLFSIKEVDLYIDFLKKGNQIDNKIYNDKNINDIIC 1517 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 + I I K + I + + ++ N Sbjct: 1518 LKNEIISFYEYILNEEIEVYTKKNGNKISNKITISENYRFYFANNLKCDHIVLKNDNFIF 1577 Query: 318 SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 ++ L + + +I I + ++ +R L Sbjct: 1578 MINSLLFIFNIKYDKITFYK---------IVSIILMEKPENRNYIL-------------- 1614 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 E S + F D Y+ K N+ L IE ++ +++ I I Sbjct: 1615 -EKVISSIKKFFNLSDIYNNLKKTFNKNNQIRLPNYIENH-----SMLLYIIRTTILIFL 1668 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP 497 + D +HL + I ++ N F+ ++ ++++K + +L L+ + N K Sbjct: 1669 ----LIDYNHLNKQDIEKEDYISYNSFKNDYIK-KKSIKYYYTQLNL--LLFRVFYNEKN 1721 Query: 498 ISAAVKEFFGS 508 I K FF + Sbjct: 1722 IPYFFKIFFST 1732 >UniRef50_Q01GR5 RPB2_LYCES DNA-directed RNA polymerase II 135 kDa polypeptide (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01GR5_OSTTA Length = 86 Score = 43.3 bits (100), Expect = 0.059, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 17/47 (36%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAA 52 ++ + + L+ QLDSF +FI+ + G Sbjct: 28 RAERLQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVGTYRE 74 >UniRef50_Q2ST96 Membrane protein, putative n=3 Tax=Mycoplasma mycoides group RepID=Q2ST96_MYCCT Length = 1052 Score = 43.3 bits (100), Expect = 0.070, Method: Composition-based stats. Identities = 60/530 (11%), Positives = 152/530 (28%), Gaps = 43/530 (8%) Query: 13 KDFGKRPQVLDVPY-----LLSIQLDSFQKFIEQDPEGQYG---LEAAFRSVFPIQSYSG 64 K+F K +V +P L+ + L+S + I + + G L F + I + Sbjct: 251 KEFAKETEVDKLPEALDKILVELGLNSLDEIIAELINSKNGFENLGKIFSKIKNIFTSQN 310 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYS-APLRVKLRLVIYE--REAPEGTVKDIKEQE 121 +L+ L + TY + + L V +E + + V+ + + Sbjct: 311 VQKLKVKGLELLD-KITPYLA-----TYLYSEIFFGLYYVAHEEIKNPNDLLVQKTDDSK 364 Query: 122 VYMGEIPLMTDNGTFVI--NGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 + L+ + F + NG +++ + + F K K+ + I Sbjct: 365 FLI----LVNNKLDFNVLLNGLSKILKHKKNFER---FYEFIFKRFDKNKIYNSVNDISS 417 Query: 180 RGSWLDFEFDPKDNLFVRI-DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 + FD + L ++ + L I + I EK+ I + Sbjct: 418 NNGVGNLVFDLINWLEKKLYNVSNTLKILIRFADIALKEPNIKKTIEEKIATLISTKLKE 477 Query: 239 MELVP---ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 + + + + L + + + Sbjct: 478 LGNYFGEWKVSFVNGVLLISAGTAGFFSPSYFDAKIHLFDKEGIFKKLLNIINNLHSTIE 537 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 + + L + L L ++K+ + + L + YI + Sbjct: 538 SFSSNISKYLKDILFLENKIFLDLSNISKMFLNITNEFKNLLGDKSTIYVYIKFLWVFNI 597 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 + + + + E+ A+ + + N + Sbjct: 598 SINDIYDIFELPYKGSSLTRLVGLFAKDKIDPYLEKLKSVSQNLKKYKFINDETKIRDEF 657 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + + + +K + + ID L G + + + + + Sbjct: 658 PKYLDKFSEYLKTYEKSENFKFNL-----IDSLY------SGNLLLDFVSKWIDFILKNA 706 Query: 476 KERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 +++ + L+ N S + +S++++ ++ S I+ Sbjct: 707 EDK--NNAVLPLVRIITKNENLESLKFIKDKWTSKVNKLANKVESFSNIS 754 >UniRef50_Q8IIT8 Conserved Plasmodium protein n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8IIT8_PLAF7 Length = 2021 Score = 42.9 bits (99), Expect = 0.086, Method: Composition-based stats. Identities = 24/254 (9%), Positives = 78/254 (30%), Gaps = 5/254 (1%) Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 E+ K + ++ LP I + + ++ + +++ +E Sbjct: 1159 LEYSLKIFQNIYNKKKGDLPVYINMNDIYIIKDKYIVSLYDEETKTFYKKNKNIEFRNII 1218 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE---YIAGKVVAKDYI 302 + + + F +Y+ ++ + ++ ++ + + Y Sbjct: 1219 MPKQLSIFINYLGRNIYLIDKNKLNKIFLLAIQYINITKFNYFTSNDIIHFLQGLLNYYS 1278 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 ++ +++ N + ++ + S +K I + + YI+E + + Sbjct: 1279 VQNDNKVVNIYNNKNDINDNSNNYTSNNKIINDYINELIINLCYIAEDTFLKWKLANVCQ 1338 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 LV + + + + F + Y N S + + Sbjct: 1339 LVYLLTKFKHIHKNIFNKFDEFLNTIQFPQ--YVYQKEKSYIRNNSTEINDHKEKNTYDT 1396 Query: 423 DDIIDVMKKLIDIR 436 D+ ++++ I Sbjct: 1397 YDMNHTCEEMLSIN 1410 >UniRef50_D1YZ03 Putative uncharacterized protein n=1 Tax=Methanocella paludicola SANAE RepID=D1YZ03_METPS Length = 1128 Score = 42.9 bits (99), Expect = 0.094, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 13/291 (4%) Query: 93 SAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRS 152 ++ ++++ + +E G+ + + Y +I M + F IN + + + HR+ Sbjct: 402 NSRKKIQINIEDEIKELKIGSDGSLVHKNFYF-KIEKMLKSNKFSINMSASIRDNDFHRN 460 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATI---- 208 + + + + S+ + + R + F I + + Sbjct: 461 QIIDLEDNMLFSGSTRNRIVSQY---ARNEKIKRNFGDDRYYLFTIADKEDIIVKTSIED 517 Query: 209 -ILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 + E L+ + L + + + + K ++E Sbjct: 518 AKVEKSEDEEEYELESITYLGDLSRYHIYEIAWTYGDNLIIKAGNCNWKFERKSFLEWQF 577 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 + + + + +D++ E+ A+ ++++ L Sbjct: 578 ESPDNVFSSISDIQISGFCNSNNDLE-DGLYYRILDDNYDEISRFADNGVTINGLHFYIN 636 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 + N+L+ G Y+ E L T + I + P P+ Sbjct: 637 GKIILKDCAIDNNLEEGEYVFEILAESTTYSKK---FYIVPKIFPISWPSM 684 >UniRef50_A2GAC2 Putative uncharacterized protein (Fragment) n=1 Tax=Trichomonas vaginalis RepID=A2GAC2_TRIVA Length = 1658 Score = 42.9 bits (99), Expect = 0.095, Method: Composition-based stats. Identities = 45/474 (9%), Positives = 118/474 (24%), Gaps = 33/474 (6%) Query: 24 VPYLLS-IQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDV 82 +P L ++ SF + + + ++ I+ + + + Y Sbjct: 1191 LPNLTDLVKQKSFFSVLLSQYKMILCFDKEDENIEKIEDINYEHSINIMKYFTKGYTVKN 1250 Query: 83 QECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI--------PL----M 130 + + + K + + + P+ M Sbjct: 1251 VLAIRDIFVKIMKRTAFINFTSSDFRNLFSLLATSKTRTTSLIMLDIIHNITKPILQTKM 1310 Query: 131 TDNGT-FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 + ++ + ++ +S + S + + I + FEF Sbjct: 1311 VSHKYNAILEEFVKSDNLEIVKSAIICLHSISYQNMIEYSQQISENINRDLKPQV-FEFF 1369 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP-ERLRG 248 + + +I L + +I + + + +V + Sbjct: 1370 VNNLQKYPNLYNLLIILSIELNEMENLATKIGQTI-KSPNLYLCPDWFLWPVVLCYNIPK 1428 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 E +F I +V + T + I+ + + + T Sbjct: 1429 EYMNFIILFICQVIESQKDNATLYF------NVYSFIKFIDDSLINCNKEVLILFTKTAA 1482 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + +++ ++ + S ++ Y+S + ++I Sbjct: 1483 YTIMSKPDVTSYVILSIFASFFFHSSMQSHSNNLVEMYLSSPFGKEKFESLQKVPIQISS 1542 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 + G+ + LF+ + V + + + Sbjct: 1543 LKNIGDVLALSNYDIDGVKLFYECKTDKHNFVQSNFLDEMVNAHNSFELNSGDILFFNYM 1602 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + I +N D + L N + F L ER K L Sbjct: 1603 IG--ITKQNNLIPSDQRNQLLNSSV--------EFFDKNLSAFERKYKNSLKKA 1646 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Ta... 1339 0.0 UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 T... 1317 0.0 UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Ta... 1305 0.0 UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 T... 1304 0.0 UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Ta... 1292 0.0 UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 T... 1288 0.0 UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Ta... 1282 0.0 UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Ta... 1240 0.0 UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria Re... 1213 0.0 UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 T... 1187 0.0 UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulf... 1147 0.0 UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189... 1134 0.0 UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926... 1123 0.0 UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Ta... 1104 0.0 UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax... 1075 0.0 UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Ta... 1072 0.0 UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria Re... 1069 0.0 UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella ... 1069 0.0 UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Ta... 1059 0.0 UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Ta... 1054 0.0 UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Ta... 1052 0.0 UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus C... 1029 0.0 UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax... 1010 0.0 UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 T... 996 0.0 UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria Rep... 985 0.0 UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Ta... 951 0.0 UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria R... 918 0.0 UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Ta... 886 0.0 UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria Rep... 885 0.0 UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira ... 881 0.0 UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 T... 879 0.0 UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Ta... 877 0.0 UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 T... 874 0.0 UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 T... 862 0.0 UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Ta... 858 0.0 UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA po... 858 0.0 UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcu... 852 0.0 UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Ta... 852 0.0 UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Ta... 845 0.0 UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haem... 842 0.0 UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=... 834 0.0 UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacter... 830 0.0 UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Ta... 830 0.0 UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus T... 809 0.0 UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax... 807 0.0 UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 T... 804 0.0 UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 T... 797 0.0 UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax... 795 0.0 UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax... 782 0.0 UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Ta... 778 0.0 UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota ... 769 0.0 UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomac... 767 0.0 UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax... 764 0.0 UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculu... 759 0.0 UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Ta... 752 0.0 UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax... 741 0.0 UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=45... 735 0.0 UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax... 733 0.0 UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax... 733 0.0 UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=12... 727 0.0 UniRef50_P08266 DNA-directed RNA polymerase II subunit RPB2 n=26... 724 0.0 UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Ta... 712 0.0 UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax... 710 0.0 UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax... 709 0.0 UniRef50_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=2... 709 0.0 UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax... 708 0.0 UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplant... 707 0.0 UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota ... 706 0.0 UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Ta... 701 0.0 UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylu... 701 0.0 UniRef50_B7FVG3 DNA-directed RNA polymerase n=5 Tax=Eukaryota Re... 700 0.0 UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas ... 699 0.0 UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax... 697 0.0 UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax... 695 0.0 UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis sol... 690 0.0 UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax... 689 0.0 UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Ta... 689 0.0 UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Ta... 684 0.0 UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 683 0.0 UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota R... 682 0.0 UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Ta... 671 0.0 UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeot... 670 0.0 UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax... 668 0.0 UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Ta... 666 0.0 UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota R... 666 0.0 UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorell... 655 0.0 UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax... 654 0.0 UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabdit... 652 0.0 UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 650 0.0 UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacter... 647 0.0 UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular o... 646 0.0 UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 646 0.0 UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 643 0.0 UniRef50_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 641 0.0 UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 T... 637 e-180 UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeo... 631 e-179 UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota R... 629 e-178 UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit R... 626 e-177 UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 625 e-177 UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 624 e-177 UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyc... 622 e-176 UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter ... 621 e-176 UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora l... 621 e-176 UniRef50_A8P4S3 DNA-directed RNA polymerase III subunit 127.6 kD... 621 e-176 UniRef50_B2W234 DNA-directed RNA polymerase n=1 Tax=Pyrenophora ... 620 e-175 UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporid... 619 e-175 UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota Re... 618 e-175 UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitoz... 618 e-175 UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putat... 618 e-175 UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax... 617 e-175 UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata Re... 615 e-174 UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophy... 613 e-173 UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus comm... 609 e-172 UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata Re... 608 e-172 UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 ... 607 e-171 UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 607 e-171 UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 606 e-171 UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax... 606 e-171 UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 603 e-170 UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 600 e-169 UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 598 e-169 UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus ma... 596 e-168 UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomyce... 596 e-168 UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora... 587 e-165 UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenop... 584 e-165 UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax... 583 e-164 UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga bre... 581 e-164 UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia inte... 581 e-164 UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophy... 573 e-161 UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=A... 571 e-161 UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta ... 570 e-160 UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 T... 570 e-160 UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=A... 564 e-159 UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora ... 562 e-158 UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=B... 560 e-157 UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas R... 560 e-157 UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q... 560 e-157 UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophy... 559 e-157 UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus H... 559 e-157 UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 ... 558 e-157 UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta ... 557 e-156 UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit ... 553 e-155 UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenop... 549 e-154 UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomat... 547 e-154 UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia inte... 547 e-154 UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria Re... 547 e-154 UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium R... 546 e-153 UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermob... 545 e-153 UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax... 544 e-152 UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae... 540 e-151 UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 T... 537 e-150 UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax... 537 e-150 UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus K... 534 e-150 UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (... 534 e-150 UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella... 527 e-147 UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 T... 525 e-147 UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 520 e-145 UniRef50_Q5RM00 DNA-directed RNA polymerase (Fragment) n=26 Tax=... 513 e-143 UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium R... 510 e-142 UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia ... 509 e-142 UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax... 507 e-141 UniRef50_Q2I5U8 DNA-directed RNA polymerase (Fragment) n=7 Tax=F... 504 e-141 UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 504 e-140 UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax a... 502 e-140 UniRef50_Q0CKF7 DNA-directed RNA polymerase I polypeptide 2 n=3 ... 498 e-139 UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative ... 496 e-138 UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Ac... 493 e-137 UniRef50_A9BK45 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 490 e-136 UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA PO... 490 e-136 UniRef50_A5H2B2 DNA-directed RNA polymerase (Fragment) n=3 Tax=L... 485 e-135 UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa pol... 484 e-134 UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 475 e-132 UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-termi... 469 e-130 UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=L... 468 e-130 UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium t... 466 e-129 UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-termi... 466 e-129 UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-termi... 465 e-129 UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit ... 463 e-128 UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit ... 462 e-128 UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 ... 461 e-128 UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 ... 455 e-126 UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpu... 439 e-121 UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Ta... 438 e-121 UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis ... 438 e-121 UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta ... 434 e-119 UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix s... 431 e-119 UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas ... 428 e-118 UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=E... 417 e-114 UniRef50_A7SSE2 DNA-directed RNA polymerase n=1 Tax=Nematostella... 410 e-112 UniRef50_C5LHP3 DNA-directed RNA polymerase n=2 Tax=Perkinsus ma... 410 e-112 UniRef50_Q98S72 DNA-directed RNA polymerase n=1 Tax=Guillardia t... 409 e-112 UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=... 408 e-112 UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus... 406 e-111 UniRef50_C9SKJ8 DNA-directed RNA polymerase n=1 Tax=Verticillium... 402 e-110 UniRef50_P42487 DNA-directed RNA polymerase subunit 2 n=7 Tax=Af... 396 e-108 UniRef50_Q06VE3 RNA polymerase subunit n=3 Tax=Ascovirus RepID=Q... 394 e-107 UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=I... 391 e-106 UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-termi... 390 e-106 UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular org... 388 e-106 UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus Re... 386 e-105 UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas... 382 e-104 UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides ... 382 e-104 UniRef50_Q4QA33 DNA-directed RNA polymerase n=7 Tax=Trypanosomat... 381 e-103 UniRef50_Q17U53 DNA-directed RNA polymerase, putative n=1 Tax=So... 379 e-103 UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum... 379 e-103 UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa... 377 e-102 UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carte... 375 e-102 UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogon... 361 1e-97 UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba Re... 358 1e-96 UniRef50_B9G6G0 DNA-directed RNA polymerase n=5 Tax=Oryza sativa... 355 7e-96 UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 ... 355 7e-96 UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain ... 351 1e-94 UniRef50_B9F8X6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa... 350 3e-94 UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax... 347 2e-93 UniRef50_Q3LW79 Second-largest subunit of RNA polymerase III n=1... 345 6e-93 UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=F... 342 4e-92 UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit ... 334 1e-89 UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=... 332 7e-89 UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=... 331 1e-88 UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota R... 331 1e-88 UniRef50_Q1L6B6 RNA polymerase II second largest subunit (Fragme... 331 2e-88 UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporobla... 329 4e-88 UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella s... 329 6e-88 UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomona... 323 2e-86 UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepI... 323 3e-86 UniRef50_P33811 DNA-directed RNA polymerase 132 kDa polypeptide ... 321 1e-85 UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n... 317 2e-84 UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozo... 316 4e-84 UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax... 316 4e-84 UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-termi... 315 7e-84 UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi... 312 9e-83 UniRef50_UPI0000E487B4 PREDICTED: similar to Polymerase (RNA) II... 310 2e-82 UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit ... 307 1e-81 UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=S... 307 2e-81 UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium c... 304 2e-80 UniRef50_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprino... 298 1e-78 UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Ta... 297 3e-78 UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious s... 296 4e-78 UniRef50_Q4ZJA8 DNA-directed RNA polymerase n=3 Tax=Lymphocystiv... 294 2e-77 UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hyp... 287 2e-75 UniRef50_D2RIB2 RNA polymerase beta subunit n=1 Tax=Archaeoglobu... 284 2e-74 UniRef50_P15352 DNA-directed RNA polymerase subunit B'' n=25 Tax... 280 2e-73 UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrel... 273 3e-71 UniRef50_D2EG08 RNA polymerase Rpb2 domain 6 n=1 Tax=Candidatus ... 272 8e-71 UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax... 267 2e-69 UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-termi... 266 5e-69 UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunalie... 261 1e-67 UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella t... 259 5e-67 UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomona... 258 9e-67 UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 ... 253 4e-65 UniRef50_Q8TXI6 DNA-directed RNA polymerase second-largest subun... 248 9e-64 UniRef50_A9TCU8 Predicted protein n=6 Tax=Physcomitrella patens ... 238 1e-60 UniRef50_UPI0001C41F1A DNA-directed RNA polymerase subunit B''''... 236 4e-60 UniRef50_O27123 DNA-directed RNA polymerase subunit B'' n=19 Tax... 236 5e-60 UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=P... 229 5e-58 UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax... 228 1e-57 UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax... 227 2e-57 UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psych... 227 2e-57 UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=P... 227 3e-57 UniRef50_Q9EMY3 AMV066 n=2 Tax=Entomopoxvirinae RepID=Q9EMY3_AMEPV 222 9e-56 UniRef50_C7DHC6 RNA polymerase beta subunit n=1 Tax=Candidatus M... 214 2e-53 UniRef50_Q0PPY8 RNA polymerase II second largest subunit (Fragme... 205 1e-50 UniRef50_D2EG09 RNA polymerase beta subunit n=1 Tax=Candidatus P... 204 2e-50 UniRef50_Q74NB5 NEQ173 n=1 Tax=Nanoarchaeum equitans RepID=Q74NB... 201 2e-49 UniRef50_C0GNU6 RNA polymerase Rpb2 domain 6 n=1 Tax=Desulfonatr... 198 2e-48 UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=... 195 1e-47 UniRef50_A7AXE5 DNA-directed RNA polymerase n=1 Tax=Babesia bovi... 192 7e-47 UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular org... 185 1e-44 UniRef50_C6H0E8 RNA polymerase subunit B (Fragment) n=1 Tax=Acin... 176 5e-42 UniRef50_Q06SF4 DNA-directed RNA polymerase subunit beta C-termi... 175 1e-41 UniRef50_B7RK98 DNA-directed RNA polymerase, beta subunit n=1 Ta... 166 5e-39 UniRef50_D1GLP0 RNA polymerase beta subunit (Fragment) n=1 Tax=N... 166 7e-39 UniRef50_Q23U98 DNA-directed RNA polymerase, beta subunit family... 163 5e-38 UniRef50_Q5W438 RNA polymerase B subunit (Fragment) n=4 Tax=Cyan... 162 1e-37 UniRef50_A9SMS1 Predicted protein (Fragment) n=1 Tax=Physcomitre... 161 1e-37 UniRef50_B9HB57 Predicted protein n=1 Tax=Populus trichocarpa Re... 161 2e-37 UniRef50_C1TQA8 DNA-directed RNA polymerase, beta subunit/140 kD... 161 2e-37 UniRef50_D1INW9 Whole genome shotgun sequence of line PN40024, s... 161 2e-37 UniRef50_A6BAY3 DNA-directed RNA polymerase beta chain (Fragment... 160 4e-37 UniRef50_UPI0001924FAA PREDICTED: similar to DNA-directed RNA po... 157 3e-36 UniRef50_C5LIK5 DNA-directed RNA polymerase III subunit, putativ... 156 6e-36 UniRef50_A5AMN9 DNA-directed RNA polymerase n=1 Tax=Vitis vinife... 153 4e-35 UniRef50_Q1KS34 DNA-directed RNA polymerase (Fragment) n=1 Tax=C... 153 5e-35 UniRef50_UPI0000E4A667 PREDICTED: similar to Polymerase (RNA) II... 144 3e-32 UniRef50_P41187 DNA-directed RNA polymerase subunit beta (Fragme... 126 6e-27 UniRef50_Q2Z143 Putative uncharacterized protein n=1 Tax=Pseudom... 124 2e-26 UniRef50_UPI0001926473 PREDICTED: similar to DNA-directed RNA po... 124 2e-26 UniRef50_A9SWU4 Predicted protein n=1 Tax=Physcomitrella patens ... 123 6e-26 UniRef50_P05472 Probable DNA-directed RNA polymerase n=4 Tax=Sac... 119 5e-25 UniRef50_A9U5J3 Predicted protein n=2 Tax=Physcomitrella patens ... 119 1e-24 UniRef50_Q48975 DNA-directed RNA polymerase (Beta) (Fragment) n=... 111 2e-22 UniRef50_D2J6W7 Putative uncharacterized protein n=1 Tax=Staphyl... 94 3e-17 UniRef50_Q23DP4 Myosin n=2 Tax=Tetrahymena thermophila RepID=Q23... 91 3e-16 UniRef50_B3RKF6 Putative uncharacterized protein n=1 Tax=Trichop... 87 5e-15 UniRef50_P90631 RNA polymerase II second largest subunit (Fragme... 85 3e-14 UniRef50_UPI0001742D24 DNA-directed RNA polymerase beta chain n=... 83 6e-14 UniRef50_UPI0001924FA9 PREDICTED: similar to DNA-directed RNA po... 83 6e-14 UniRef50_C0SZK4 DNA-directed RNA polymerase subunit beta (Fragme... 82 2e-13 UniRef50_B9RDB2 DNA-directed RNA polymerase beta chain, putative... 82 2e-13 UniRef50_C5Y5J9 Putative uncharacterized protein Sb05g004163 (Fr... 81 3e-13 UniRef50_D1I1U7 Whole genome shotgun sequence of line PN40024, s... 75 2e-11 UniRef50_Q36704 (S1 sensitive region) (Fragment) n=4 Tax=Embryop... 66 1e-08 UniRef50_C7AA72 RpoB (Fragment) n=36 Tax=Alphaproteobacteria Rep... 65 2e-08 UniRef50_Q7SXI3 Zgc:66298 protein n=2 Tax=Danio rerio RepID=Q7SX... 62 2e-07 UniRef50_UPI00016982A9 DNA-directed RNA polymerase subunit beta ... 61 2e-07 UniRef50_Q8KRK0 RpoB protein (Fragment) n=1 Tax=Pediococcus pent... 59 1e-06 UniRef50_B9U5W9 RNA polymerase beta subunit (Fragment) n=21 Tax=... 53 9e-05 UniRef50_B5Z8J4 DNA-directed RNA polymerase, beta subunit n=1 Ta... 50 5e-04 Sequences not found previously or not previously below threshold: UniRef50_A3QRU7 RNA polymerase II second largest subunit (Fragme... 73 1e-10 UniRef50_Q01GR5 RPB2_LYCES DNA-directed RNA polymerase II 135 kD... 48 0.004 UniRef50_A8I790 Predicted protein n=1 Tax=Chlamydomonas reinhard... 47 0.006 UniRef50_Q7RFQ7 235 kDa rhoptry protein (Fragment) n=4 Tax=Plasm... 46 0.011 UniRef50_UPI0001924A1B PREDICTED: similar to DNA-dependent RNA p... 46 0.011 UniRef50_Q9XDQ2 ORF12 protein n=2 Tax=cellular organisms RepID=Q... 45 0.016 UniRef50_Q67XZ1 DNA-directed RNA polymerase II second largest ch... 45 0.025 UniRef50_Q234Z7 TPR Domain containing protein n=1 Tax=Tetrahymen... 44 0.027 UniRef50_Q7RF77 Putative uncharacterized protein PY04831 n=6 Tax... 44 0.029 UniRef50_B9W484 Putative RNA polymerase subunit LEF-8 n=1 Tax=Co... 44 0.034 UniRef50_B6TQP3 Putative uncharacterized protein n=1 Tax=Zea may... 44 0.037 UniRef50_D2V7D7 Asparagine synthase n=1 Tax=Naegleria gruberi Re... 44 0.057 UniRef50_B3PMQ9 Massive surface protein MspC n=4 Tax=Mycoplasma ... 43 0.066 >UniRef50_Q2GCD7 DNA-directed RNA polymerase subunit beta n=69 Tax=cellular organisms RepID=RPOB_NOVAD Length = 1392 Score = 1339 bits (3465), Expect = 0.0, Method: Composition-based stats. Identities = 779/1360 (57%), Positives = 1007/1360 (74%), Gaps = 29/1360 (2%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE--GQYGLEAAFRSVFPIQSYSGN 65 KKRIRK FG +V+ +P L+ +Q +S+++F+ DP GLE RSVFPIQ ++G Sbjct: 17 KKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDPATGYVSGLEKTLRSVFPIQDFAGT 76 Query: 66 SELQYVS---YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIY--EREAPEGTVKDIKEQ 120 + L Y L P +DV EC+ RG+TY+AP++V L+L + + E ++ DIKEQ Sbjct: 77 ASLDIKEKDGYVLESPKYDVNECRQRGITYAAPMKVTLKLATFEVDAETETKSLIDIKEQ 136 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG+IPLMT+NGTF INGTERVIVSQ+HRSPGV FD D+GKTHSSGK L+ AR+IPYR Sbjct: 137 DVYMGDIPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHSSGKYLFAARVIPYR 196 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 GSWLDFEFD KD + VRIDR+RKLP T +L AL E IL F++ V + + ++ Sbjct: 197 GSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALGLGDEDILHHFYDTVTWARAEGGWKVP 256 Query: 241 LVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 V E+ RG +FDI +G+V G++I+ R + KD ++ + +P E I G+ A Sbjct: 257 FVLEQWRGSKPAFDIVDAKSGEVIFPAGQKISPRAANKAAKDGLEALLIPTEEIFGRYAA 316 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 +D IDESTG + A E+S + L L ++G ++ L + + GP+I TL+ D D Sbjct: 317 RDLIDESTGRIWIEAGDEVSPENLDLLDKAGIDNLDLLDIDHISTGPWIRNTLKADKAPD 376 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R AL +IYR+MRPGEPPTRE AE+LF+ LFF DRYDLSAVGR+K N L + + Sbjct: 377 RDHALADIYRVMRPGEPPTRETAEALFDGLFFDGDRYDLSAVGRVKLNMRLGLDCPDTVT 436 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 L DDI+ V+K+L+++++GKGEVDDID+LGNRR+RSVGE+ ENQ+RVGL+R+ERAVKER Sbjct: 437 TLRTDDILAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKER 496 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S D+ T+MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGL Sbjct: 497 MSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGL 556 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 TRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLS +A+ N+YGF+ETPYRKV DG Sbjct: 557 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLSTFARVNKYGFIETPYRKVVDGK 616 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT ++ YLSA+EE + +AQA++ L +G FVE+LV+ R GE + RD V MDVS + Sbjct: 617 VTKDVIYLSAMEEQKHTVAQASAELTADGSFVEELVSARQNGEFVMAPRDTVTLMDVSPK 676 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP ++AD P VGTGME VA DSG A Sbjct: 677 QLVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKADAPFVGTGMEETVARDSGAAISA 736 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 R GVV VDA+RIVI+ + ++ PG++G+DIY L K+ RSNQ+TCINQ P V +G+ +E Sbjct: 737 LRSGVVDQVDATRIVIRAS-GDIEPGQSGVDIYRLQKFERSNQSTCINQRPLVKVGDLIE 795 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+V+ED FT+IHI+E Sbjct: 796 KGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKEDVFTSIHIEEFEV 855 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDILVGK+TPKGE+ +TPE Sbjct: 856 MARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILVGKITPKGESPMTPE 915 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 EKLLRAIFGEKASDV+D+SLR+P GV+GT++DV+VF R G+E D R I+ ++++ K Sbjct: 916 EKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIEIDDRTRAIQNEEIERLAK 975 Query: 959 DLSEELQILEAGLFSRIRAVLVAGG---VEAEKLDKLPRD----------RWLELGLTDE 1005 D +E IL F+R++ +L+ + D W + + D+ Sbjct: 976 DREDERAILNRATFNRLKDMLLGQVAAAAPKGIKKGVEIDEQVLADVERHEWWKFAVADD 1035 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 +Q QLE + QYD ++K E ++ K+ +GD+LAPGVLK+VKV++AVKR++QPGDK Sbjct: 1036 ARQQQLEAVKAQYDTAVKAIQEKFEDRKEKLERGDELAPGVLKMVKVFVAVKRKLQPGDK 1095 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 MAGRHGNKG+IS+I P EDMP+ E+GTPVD VLNPLGVPSRMN+GQI ETHLG AA+G+G Sbjct: 1096 MAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLGWAARGLG 1155 Query: 1126 DKINAMLKQQQEVAKL------REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 +I L +E E ++ ++ +DE+++ A+++R G Sbjct: 1156 KRIGEALDAWREANPNPEAGQPPEAVRELLKEIYGDNYAAEIDARNDEQIIDFAQSVRLG 1215 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 +P+ +PVFDGA E ++ ++L+L L SGQ+ L+DGRTG+ F+R VTVG Y+LKL+HLV Sbjct: 1216 VPMGSPVFDGAVEKDVTDMLRLAGLDESGQVTLFDGRTGDAFDRKVTVGMKYVLKLHHLV 1275 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAYTLQEMLTVKSDDV Sbjct: 1276 DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVV 1335 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1336 GRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1375 >UniRef50_A2SLG5 DNA-directed RNA polymerase subunit beta n=666 Tax=Bacteria RepID=RPOB_METPP Length = 1375 Score = 1317 bits (3407), Expect = 0.0, Method: Composition-based stats. Identities = 873/1370 (63%), Positives = 1068/1370 (77%), Gaps = 33/1370 (2%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVF 57 YSYTE+KRIRK FGKR VL VPYLL++Q DS+ F+++D Q GL+AAF S F Sbjct: 6 PYSYTERKRIRKSFGKRENVLGVPYLLTMQKDSYVAFLQKDVPPQKRKPEGLQAAFLSAF 65 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYERE---APEGTV 114 PI S++G E++Y+ + + +P FD +ECQ RG+TY+A +R KL+++IY+RE + V Sbjct: 66 PIVSHNGFVEMKYIEFNMAKPAFDTRECQQRGLTYAAAVRAKLQMIIYDRETSTSQSKVV 125 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 K+IKEQEVYMGE+PLMTD G+F++NGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++A Sbjct: 126 KEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 185 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 RIIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ EQIL FF F + D Sbjct: 186 RIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILANFFVFDNFRLMD 245 Query: 235 NKLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 + QME V +RLRGE A FD+ + G V VEK +RITARH R LE I VP +++ Sbjct: 246 SGAQMEFVADRLRGEIARFDLTDKAGAVIVEKDKRITARHTRALEASGTSFISVPEDFLV 305 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G+V+AK+ +D TGE+I AN EL+ LL KL +G K I+ L+TN+LD G YIS+TL Sbjct: 306 GRVLAKNMVDADTGEIIAKANDELTDSLLKKLRTAGIKDIQCLYTNELDMGAYISQTLAS 365 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 D T D L+A V IYRMMRPGEPPT +A ++LF LF+SED YDLS VGRMKFN + R+ Sbjct: 366 DETADELAARVAIYRMMRPGEPPTEDAVQALFNRLFYSEDTYDLSRVGRMKFNARVGRDT 425 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 EG +L+ DDI+DV+K L+++RNG+GEVDDIDHLGNRR+R VGE+AENQ+R GL R+E+ Sbjct: 426 AEGRMVLANDDILDVVKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQYRSGLARIEK 485 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 AVKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 486 AVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSAL 545 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL++YAQ NEYGFLETPYR+ Sbjct: 546 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETPYRR 605 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V D VTD+I YLSAIEEG YVIAQAN+ LD++G +++LV+ R GES L S +++ YM Sbjct: 606 VIDSKVTDQIDYLSAIEEGKYVIAQANAGLDKDGKLIDELVSARESGESVLTSPERIQYM 665 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DV+ Q+VSV ASL+PFLEHDDANRALMGANMQRQAVP LR +K VGTG+ER AVDSG Sbjct: 666 DVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGVERVSAVDSG 725 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 AKRGGVV Y+D +RIVI+VN+ E GE G+DIYNL KY RSNQNT I+Q P V Sbjct: 726 TVVTAKRGGVVDYIDTNRIVIRVNDAETVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVQR 785 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V GDV+ADG STD+GELALGQNM VAFMPWNGYNFEDSIL+SERVV +DR+T+IHI Sbjct: 786 GDQVGAGDVIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVADDRYTSIHI 845 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +EL ++RDTKLG EEIT DIPN+ E L +LDESGIVYIGAEV GD+LVGKVTPKGET Sbjct: 846 EELVVMARDTKLGSEEITRDIPNLSEQQLGRLDESGIVYIGAEVNPGDVLVGKVTPKGET 905 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 LTPEEKLLRAIFGEKASDVKD+SLRV G +GTVIDVQVFTR+G+++DKRA +I + +L Sbjct: 906 TLTPEEKLLRAIFGEKASDVKDTSLRVDQGTNGTVIDVQVFTREGIQRDKRAQQIIDDEL 965 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAG---GVEAEKLDKLPRDR----------WLEL 1000 K+ + DL+++L+I+EA F RI +L G + P D+ W ++ Sbjct: 966 KRFRLDLNDQLRIVEADAFDRIEKLLAGKTANGGPNKLAKGTPIDKAYLASVDKYHWFDI 1025 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 D++ NQLE + ++ +H F+ E KR+K+TQGD+L GVLK+VKVYLAVKRR+ Sbjct: 1026 RPADDDIANQLESIKNSLEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRL 1085 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 QPGDKMAGRHGNKGV+SKI P+EDMPY +GTP DIVLNPLGVPSRMN+GQ+LE HLG A Sbjct: 1086 QPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHLGWA 1145 Query: 1121 AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGM 1180 AKGIG +I +L+Q+ ++A +R+F+ Y+ + ++ SD E+ +A NL +G+ Sbjct: 1146 AKGIGQRIGDLLQQEAKIADVRKFLDELYNKSGGKSEGLNG--LSDAEITEMATNLAQGV 1203 Query: 1181 PIATPVFDGAKEAEIKELLKLGDLPT----------SGQIRLYDGRTGEQFERPVTVGYM 1230 P ATPVFDGA E EI+ ++ L Q L+DGRTG+ FERPVTVGYM Sbjct: 1204 PFATPVFDGATEEEIRAMMHLAYPDEIAAAKGLNATRTQATLHDGRTGDAFERPVTVGYM 1263 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 ++LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEM Sbjct: 1264 HVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEM 1323 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LTVKSDDVNGRTK+Y++IV G H +E GMPESFNVL+KEIRSLGI+IELE Sbjct: 1324 LTVKSDDVNGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGIDIELE 1373 >UniRef50_B8JB70 DNA-directed RNA polymerase subunit beta n=41 Tax=Bacteria RepID=RPOB_ANAD2 Length = 1422 Score = 1305 bits (3377), Expect = 0.0, Method: Composition-based stats. Identities = 780/1387 (56%), Positives = 1024/1387 (73%), Gaps = 50/1387 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSV 56 M + RIR++FGK ++ ++P L++IQ S+ KF++ D GL+ F+SV Sbjct: 1 MATTIQNNFRIRRNFGKINKIAEIPNLIAIQKFSYDKFLQADVPPEKRDDTGLQGVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE--GTV 114 FPI+ ++ S L++VSY L +P +DV EC RG+TYSAP++V +RLV+++++ ++ Sbjct: 61 FPIKDFNETSSLEFVSYHLEKPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +D+KEQEVY GEIPLMT+NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNA Sbjct: 121 RDVKEQEVYFGEIPLMTENGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY--------------TTEQI 220 RIIPYRGSW+DFEFD KD L+VRIDRRRKLPAT++LRAL + E+I Sbjct: 181 RIIPYRGSWIDFEFDHKDILYVRIDRRRKLPATVLLRALGATPDTAKKDPVEFHGSAEEI 240 Query: 221 LDLFFEKVIFEIR-DNKLQMELVPERLRGETASFDIE--ANGKVYVEKGRRITARHIRQL 277 L +++ I K + +LVP+ L+G+ A+ DI + +V V+K R+ T I++L Sbjct: 241 LKYYYDTETIRIEGKGKYEKDLVPDLLKGQRATRDIRDPKSNEVIVKKNRKYTESAIKKL 300 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 +K + V E + K+ A+D +DE+TGE++ N E++ + +L + + LF Sbjct: 301 VAAKMKSLPVEPEEVYTKISAEDVVDETTGEVLLEVNEEVTEAKVEELRKRNINEFKVLF 360 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 ++L+ P + +TL D + A++EIYR +RPG+PPT E A +LF NLFF+ +RYDL Sbjct: 361 IDNLNILPALRDTLMQDKISTPEEAIMEIYRRLRPGDPPTPETATNLFVNLFFNAERYDL 420 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRS 455 S VGR+K N EE + +L+K DI++V++ LID++NGK +VDDIDHLGNRR+R+ Sbjct: 421 SKVGRLKLNYKFGIEEPLENTVLTKRDILEVVRFLIDLKNGKPNKDVDDIDHLGNRRVRA 480 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 VGE+ ENQ+R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFM Sbjct: 481 VGELLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFM 540 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 DQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLI SL Sbjct: 541 DQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHSTHYGRICPIETPEGPNIGLIASL 600 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 S YA+ NEYGF+ETPYRKV G VTDE+ + SA+EE ++IAQAN+ +D++G+F E V Sbjct: 601 STYARVNEYGFVETPYRKVEKGRVTDEVTFYSALEEEKHIIAQANAPVDKKGNFTEAKVW 660 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 CR +GE D+VD MDVS Q+VSV ASL+PFLE+DDANRALMG+NMQRQAVP LR Sbjct: 661 CRKEGEYIYVRPDEVDLMDVSPNQLVSVAASLVPFLENDDANRALMGSNMQRQAVPLLRT 720 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLT 754 PLVGTG+E VA DSGVT VAKR GVVQ VDASRIV+K + +DIYNL Sbjct: 721 QAPLVGTGIEAIVARDSGVTTVAKRDGVVQSVDASRIVVKADVPTSATDVANEVDIYNLI 780 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 KY RSNQNTCINQ P V GE V++GDV+ADGP+T++GELALGQN+ VAFMPW GYNFED Sbjct: 781 KYQRSNQNTCINQKPIVKPGERVKKGDVIADGPATEMGELALGQNVVVAFMPWQGYNFED 840 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 SIL+SER+++ED FT++HI+E CV+RDTKLG EEIT DIPNVGE AL LDESGI+ IG Sbjct: 841 SILLSERLIKEDVFTSVHIEEFECVARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIG 900 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 AEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GVSGTVI+ +VF Sbjct: 901 AEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVSGTVINAKVF 960 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 +R GVEKD+RA IEEM+ + KD ++E++I++ F +IR +L+ V A +D Sbjct: 961 SRKGVEKDERAKAIEEMEEAKLLKDQNDEIKIIQDSAFQKIRRLLLGKEVTARLVDDKGE 1020 Query: 995 DRWLELGLTDE------------------EKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 + + D+ + Q+ ++ E ++E K + K ++ Sbjct: 1021 QLLKKGDVLDDALLDTVPQRYWGEIAVAGDVQDLARKIIENFEEQKELVKLLFGEKIGRL 1080 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 +GD+L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S++ P ED+PY E+GTPVDI Sbjct: 1081 KKGDELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRVLPEEDLPYLEDGTPVDI 1140 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA--- 1153 VLNPLGVPSRMN+GQILETHLG AA+ +G ++ M++++ LR+ ++ A+ Sbjct: 1141 VLNPLGVPSRMNVGQILETHLGWAARNVGLRLQEMIEKEWGADPLRKKLKAAFAGTEGGP 1200 Query: 1154 -DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRL 1212 R + ++E+ +L + LR+GM +ATPVFDGA+E E+K L++ G + Q L Sbjct: 1201 VGERLAALIEDVPEKELPKLVQKLRRGMHVATPVFDGAREDEMKALMEEG--SATLQSIL 1258 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 +DGRTGE F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR GE Sbjct: 1259 FDGRTGEPFDQDVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGE 1318 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 MEVWA+EAYGAAY+LQE LTVKSDDV GRT+MY+ IV G + +E G+PESFNVL+KE++S Sbjct: 1319 MEVWAMEAYGAAYSLQEFLTVKSDDVVGRTRMYEAIVKGENTLESGLPESFNVLIKELQS 1378 Query: 1333 LGINIEL 1339 L +++EL Sbjct: 1379 LALDVEL 1385 >UniRef50_Q1D7U3 DNA-directed RNA polymerase subunit beta n=105 Tax=Bacteria RepID=RPOB_MYXXD Length = 1408 Score = 1304 bits (3374), Expect = 0.0, Method: Composition-based stats. Identities = 774/1380 (56%), Positives = 1011/1380 (73%), Gaps = 44/1380 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSV 56 M R+RK F K +++D+P L++IQ S++KF++ D GL+ F+SV Sbjct: 1 MPTQIQNNFRVRKTFAKIAKIIDIPNLINIQKQSYEKFLQADIAADKREDLGLQGVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE--GTV 114 FPI+ ++ S L++VSY L P +DV EC RG+TYSAP++V +RLV+++++ ++ Sbjct: 61 FPIRDFNETSSLEFVSYHLERPKYDVDECHQRGMTYSAPIKVVVRLVVWDKDEETGAQSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +D+KEQEVY GEIPLMT NGTF+INGTERV+VSQLHRSPG FFD DKGK+HSSGK+LYNA Sbjct: 121 RDVKEQEVYFGEIPLMTQNGTFIINGTERVVVSQLHRSPGAFFDHDKGKSHSSGKLLYNA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY--------------TTEQI 220 RIIPYRGSW+DFEFD KD L+VRIDRRRKLPAT+++RAL +TE+I Sbjct: 181 RIIPYRGSWIDFEFDHKDLLYVRIDRRRKLPATVLIRALGAVPDTAKKNPLEFKGSTEEI 240 Query: 221 LDLFFEKVIFEI-RDNKLQMELVPERLRGETASFDIE-ANGKVYVEKGRRITARHIRQLE 278 L+ ++ + + + + E L G+ A+ DI+ G++ V+K R+ T I++LE Sbjct: 241 LNYYYATETIYLHSAEEFEKSVELELLPGQRATRDIKAKTGELIVKKNRKFTRAAIKKLE 300 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 +K + + + + KV A D ++E+ G ++ N E++ + + +L + G K + LF Sbjct: 301 AAKMKTLPIDADELFTKVSAYDVVEETNGVVLLECNEEVTQEKVDELLKHGIKEFKVLFI 360 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 ++L+ GPY+ ETL +D +++EIYR +RPG+PPT E A +LF NLFF+ +RYDLS Sbjct: 361 DNLNVGPYLRETLMLDKLETPEQSIMEIYRRLRPGDPPTPETAINLFTNLFFNPERYDLS 420 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 VGR+K N EE IL+K DI++V++ LID++NGKG +DDIDHLGNRR+R+VGE Sbjct: 421 KVGRLKLNFKFGLEEPLDGQILTKRDILEVIRYLIDLKNGKGTIDDIDHLGNRRVRAVGE 480 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + ENQ+R+GLVR+ERA+KER+SL +++TLMP D+INAKP++A +KEFFGSSQLSQFMDQ Sbjct: 481 LLENQYRIGLVRMERAIKERMSLQEIETLMPHDLINAKPVTAVIKEFFGSSQLSQFMDQT 540 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI SLS Y Sbjct: 541 NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTY 600 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 A+ NE+GF+ETPYRKV GVVT+++ + SA+EE + IAQAN+ D++G F LV+ R Sbjct: 601 ARVNEFGFVETPYRKVEAGVVTNDVAFYSALEEEKHTIAQANAETDKKGKFANALVSSRR 660 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 GE + VD MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP LR P Sbjct: 661 GGEFVQARAEDVDLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRTAAP 720 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN-EDEMYPGEAGIDIYNLTKYT 757 LVGTG+E VA DSGVT VA+R G+V+ VDA RIV+K + + + +DIYNL KY Sbjct: 721 LVGTGIESIVARDSGVTCVARRDGIVESVDAGRIVVKADVPASLSDVTSEVDIYNLLKYQ 780 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 RSNQNTC+NQ P +S G+ V +GDV+ADGP+T+ GELALGQN+ VAFMPW GYNFEDSIL Sbjct: 781 RSNQNTCLNQKPIISKGDRVMKGDVIADGPATETGELALGQNVVVAFMPWQGYNFEDSIL 840 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 +SER++++D FT+IHI+E C++RDTKLG EEIT DIPNVGE AL LDESGI+ IGAEV Sbjct: 841 ISERILKDDVFTSIHIEEFECIARDTKLGKEEITRDIPNVGEEALKDLDESGIIRIGAEV 900 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GD+LVGK+TPKGETQL+PEEKLLRAIFGEKA DV+DSSLRVP GV GTVI+ +VF+R Sbjct: 901 KPGDVLVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDSSLRVPPGVVGTVINAKVFSRK 960 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-----------GVEA 986 GVEKD+RA +IE M+ + KD ++E+++L+ F RIR ++ + Sbjct: 961 GVEKDERAKQIESMEEAKLLKDQNDEIKVLQDSAFGRIRGLVRTKEVQGKLVDDKGKILL 1020 Query: 987 EKLDKLPRDRWLELGLT-------DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 +K D L + + + ++L + +E K + K +I +G Sbjct: 1021 KKGDILDDELLSTVPYKYWGEISVGDPLDSRLRDILRNLEETKEAVKLAFGEKIARIKKG 1080 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L PGV+K+VKVY+A+KR++ GDKMAGRHGNKGV+S+I P EDMPY E+G PVDIVLN Sbjct: 1081 DELPPGVIKMVKVYVAIKRKLAVGDKMAGRHGNKGVVSRILPEEDMPYLEDGRPVDIVLN 1140 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQILETHLG AAKG G+ + ++ ++E ++ Y +D Sbjct: 1141 PLGVPSRMNIGQILETHLGWAAKGTGEALQRYVEANWSSDAIKERLKVIY---SDPAFGE 1197 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 L DEE+ +L ++G+ +ATPVFDGA+E EI LL G LP SGQ+ L+DGRTGE Sbjct: 1198 FLDKLDDEEIKQLCLRSKRGIHVATPVFDGAQETEIHALLDEGQLPRSGQMVLFDGRTGE 1257 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 F++ VTVG MYMLKL+HLVD+K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWA+E Sbjct: 1258 PFDQNVTVGVMYMLKLHHLVDEKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAME 1317 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 AYGAAYTLQE LTVKSDDV GRT+MY+ IV G++ +E G+PESFNVLLKE++SL +++EL Sbjct: 1318 AYGAAYTLQEFLTVKSDDVVGRTRMYEAIVKGDNVLESGLPESFNVLLKELQSLALDVEL 1377 >UniRef50_Q5F5R5 DNA-directed RNA polymerase subunit beta n=28 Tax=Neisseriaceae RepID=RPOB_NEIG1 Length = 1392 Score = 1292 bits (3342), Expect = 0.0, Method: Composition-based stats. Identities = 888/1393 (63%), Positives = 1092/1393 (78%), Gaps = 56/1393 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ----DPEGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR VL+VP+LL+ Q+DS+ KF++ D GL+AAF S+ Sbjct: 1 MNYSFTEKKRIRKSFAKRENVLEVPFLLATQIDSYAKFLQLENAFDKRTDDGLQAAFNSI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + L++V Y LGEP+FD+ ECQ+RG+TY+APLR ++RLVI ++EA + TVK+ Sbjct: 61 FPIVSHNGYARLEFVYYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKEASKPTVKE 120 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 ++E EVYMGEIPLMT +G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 121 VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 180 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDFEFDPKD L+ RIDRRRK+P TI+L+AL Y EQILD+F++K F + N Sbjct: 181 IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDIFYDKETFYLSSNG 240 Query: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +Q +LV RL+GETA DI + G V V KG+RITA++IR + + ++V E + GK Sbjct: 241 VQTDLVAGRLKGETAKVDILDKEGNVLVAKGKRITAKNIRDITNAGLTRLDVEQESLLGK 300 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A D ID TGE++ +AN E++ +LLAK +G K I TL+ N+LD G YIS TLR D Sbjct: 301 ALAADLIDSETGEVLASANDEITEELLAKFDINGVKEITTLYINELDQGAYISNTLRTDE 360 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE-- 413 T R +A V IYRMMRPGEPPT EA E LF LFFSED YDLS VGRMKFN ++ Sbjct: 361 TAGRQAARVAIYRMMRPGEPPTEEAVEQLFNRLFFSEDSYDLSRVGRMKFNTRTYEQKLS 420 Query: 414 --------------------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 +G +LS +DI+ + L+++RNG GEVDDIDHLGNRR+ Sbjct: 421 EAQQNSWYGRLLNETFAGAADKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV 480 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 RSVGE+ ENQFR GL RVERAVKERL+ + + LMP D+INAKP+SAA+KEFFGSSQLSQ Sbjct: 481 RSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQ 540 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 FMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN Sbjct: 541 FMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 600 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 SLSVYA+TN+YGFLETPYR+V DG VT+EI YLSAIEEG YVIAQAN++LD +G+ + DL Sbjct: 601 SLSVYARTNDYGFLETPYRRVIDGKVTEEIDYLSAIEEGRYVIAQANADLDSDGNLIGDL 660 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 VTCR KGE+ + + D+V YMDV+T QVVSV ASLIPFLEHDDANRALMGANMQRQAVP L Sbjct: 661 VTCREKGETIMATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL 720 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 R +KP+VGTG+ER+VAVDS VA+RGGVV+YVDA+R+VI+V++DE GE G+DIYNL Sbjct: 721 RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRVVIRVHDDEATAGEVGVDIYNL 780 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 K+TRSNQ+T INQ P V G+ ++RGD++ADG STDLGELALGQNM +AFMPWNGYN+E Sbjct: 781 VKFTRSNQSTNINQRPAVKAGDVLQRGDLVADGASTDLGELALGQNMTIAFMPWNGYNYE 840 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 DSIL+SE+V +DR+T+IHI+EL V+RDTKLG E+IT DIPN+ E ++LDESGIVYI Sbjct: 841 DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYI 900 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 GAEV GD+LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLR+P G+SGTVIDVQV Sbjct: 901 GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV 960 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG---------- 983 FTR+G+++DKRA I + +LK+ + DL+++L+I + F RI ++V Sbjct: 961 FTREGIQRDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFDRIERMIVGQKANGGPMKLTK 1020 Query: 984 ---VEAEKLDKLPRDR-WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + E L LP W ++ LTDE+ QLE + + + E ++ E K++K+TQG Sbjct: 1021 GSEITTEYLAGLPSRHDWFDIRLTDEDLAKQLELIKLSLQQKREEADELYEIKKKKLTQG 1080 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 D+L PGV K+VKV++A+KRR+Q GDKMAGRHGNKGV+S+I P+EDMPY +G PVDIVLN Sbjct: 1081 DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN 1140 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQILE HLG AAKGIG++I+ MLK++++ +LREF+ + Y +K Sbjct: 1141 PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKERRKAGELREFLNKLY---NGSGKKE 1197 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG----------- 1208 DL + +DEE++ LA NLRKG A+PVFDGAKE+EI+E+L L Sbjct: 1198 DLDSLTDEEIIELASNLRKGASFASPVFDGAKESEIREMLNLAYPSEDPEVEKLGFNDSK 1257 Query: 1209 -QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 QI LYDGR+GE F+R VTVG M+ LKL+HLVD+KMHARSTG YSLVTQQPLGGKAQFGG Sbjct: 1258 TQITLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGG 1317 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLL 1327 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY+NIV G H+++ GMPESFNVL+ Sbjct: 1318 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYENIVKGEHKIDAGMPESFNVLV 1377 Query: 1328 KEIRSLGINIELE 1340 KEIRSLG++I+LE Sbjct: 1378 KEIRSLGLDIDLE 1390 >UniRef50_A5VBZ8 DNA-directed RNA polymerase subunit beta n=386 Tax=Bacteria RepID=RPOB_SPHWW Length = 1455 Score = 1288 bits (3333), Expect = 0.0, Method: Composition-based stats. Identities = 768/1434 (53%), Positives = 991/1434 (69%), Gaps = 97/1434 (6%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG--QYGLEAAFRSVFPI 59 T KKRIRK FG +V+ +P L+ +Q +S+++F+ P GLE RSVFPI Sbjct: 5 AVPATAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSRPADGYVSGLEKTLRSVFPI 64 Query: 60 QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK--DI 117 + ++G +EL +V Y L +P +D EC+ RG+TY+AP+RV LRL+++E + T DI Sbjct: 65 RDFAGTAELDFVQYELEDPKYDTDECRQRGMTYAAPMRVTLRLIVFEVDPDTETRSVLDI 124 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 KEQ+VYMG++PLMT+NGTF+INGTERVIVSQ+HRSPGV FD D+GKTH+SGK L+ AR+I Sbjct: 125 KEQDVYMGDMPLMTENGTFLINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFAARVI 184 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI----- 232 PYRGSWLDFEFD KD + VRIDR+RKLP T +LRAL ++ + +I Sbjct: 185 PYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLRALGDAVIEVNPDKGKFEAGDIVAISG 244 Query: 233 ---------RDNKLQMELVPERLRGETASFDIEANGKV-----YVEKGRR------ITAR 272 +L P K+ +G R Sbjct: 245 VNRACRVKAVAGRLVTVEDPTGAIIPGGLIQTAEGEKIGHVARIRLQGMSGEDILNYFYR 304 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL----------------------- 309 R + ++ + E G+ A D ++ TGE+ Sbjct: 305 TQRFVRGENGWKVPFVAENWRGQKPAFDVVNADTGEVVFPAGTKISPRAANKAGKDGLET 364 Query: 310 -------------------------ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 A E++ + L L ++G ++ L + + G Sbjct: 365 LLIPTDQIFGRYSAYDLIDESTGRIYIEAGDEVTPENLEALDKAGFDHVDLLDIDHVSTG 424 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 P+I TL+ D DR AL EIYR+MRPGEPPT+E AE+LF LFF +RYDLSAVGR+K Sbjct: 425 PWIRNTLKADKVEDRDHALSEIYRVMRPGEPPTKETAEALFAGLFFDSERYDLSAVGRVK 484 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 N L + + L +DI+ V+K L+D+++GKGE+DDID+LGNRR+RSVGE+ ENQ+ Sbjct: 485 LNMRLELDAEDTVTTLRSEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLENQY 544 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 RVGL+R+ERAVKER+S D+ T MP D+INAKP AAV+EFFGSSQLSQFMDQ NPLSE+ Sbjct: 545 RVGLLRMERAVKERMSSVDVSTAMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEV 604 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 THKRR+SALGPGGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSL+ +++ N+Y Sbjct: 605 THKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKY 664 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 GF+ETPYRK+ DG VT+E+ YLSA+EE + IAQAN+ LD EG FVEDL++ R GE + Sbjct: 665 GFIETPYRKIVDGKVTNEVVYLSAMEEAKHTIAQANAELDSEGRFVEDLISAREAGEFLM 724 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 RD V MDVS +Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +RA+ P VGTGM Sbjct: 725 APRDHVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGM 784 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E VA DSG AKR G+V VDA+RIV++ + G++G+DIY L K+ RSNQ+TC Sbjct: 785 EETVARDSGAAIAAKRSGIVDQVDATRIVVRAT-GAVDAGKSGVDIYTLMKFQRSNQSTC 843 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 INQ P V +G+ V GD++ADGPST+ GELALG+N+ VAFMPWNGYN+EDSIL+SER+V+ Sbjct: 844 INQRPLVKVGDVVNAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVK 903 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 +D FT+IHI E ++RDTKLGPE+IT DIPNVGE AL LDE+GIVYIGAEV GDIL Sbjct: 904 DDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILC 963 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 GK+TPKGE+ +TPEEKLLRAIFGEKASDV+D+SLR+P GVSGTV+DV+VF R G++KD+R Sbjct: 964 GKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVDVRVFNRHGIDKDER 1023 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-------------GVEAEKLDK 991 A+ IE ++ + KD +E IL ++R++ +L+ + E L + Sbjct: 1024 AMAIEREEIDRLTKDREDERAILNRANYARLKEMLLGQIATAAPKGIKKGSEINEELLAE 1083 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 + + W + + D+ +Q LE + QYD+ KK E + K+ +GD+L PGVLK+VK Sbjct: 1084 VEKREWWKFAVQDDARQADLEAVKAQYDDAVGLIVKKFEDRVEKLQRGDELPPGVLKMVK 1143 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V++AVKR++QPGDKMAGRHGNKGVIS+I P EDMP+ E+GTPVDIVLNPLGVPSRMN+GQ Sbjct: 1144 VFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQ 1203 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY------DLGADVRQKVDLSTFS 1165 I ETHLG AA+G+G ++ + L+ +E + D+ S Sbjct: 1204 IFETHLGWAARGLGKQVTSALEAWREANPDAQAATPPAAVVDRLKEVYGKEYHADIEGRS 1263 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 ++++ +A L+ G+P+ATPVFDGA+EA++ E+L+ L SGQ+ L+DGRTG+QF+R V Sbjct: 1264 TDQIVEMAGLLKNGVPMATPVFDGAREADVAEMLRRAGLDESGQVELFDGRTGDQFDRKV 1323 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 TVGY+YMLKL+HLVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWAL+AYGAAY Sbjct: 1324 TVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAY 1383 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 TLQEMLTVKSDDV GRTK+Y+ IV G+ E G+PESFNVL+KE+RSLG+N+EL Sbjct: 1384 TLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVEL 1437 >UniRef50_B8J1A8 DNA-directed RNA polymerase subunit beta n=15 Tax=Proteobacteria RepID=RPOB_DESDA Length = 1378 Score = 1282 bits (3318), Expect = 0.0, Method: Composition-based stats. Identities = 725/1358 (53%), Positives = 943/1358 (69%), Gaps = 32/1358 (2%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE-----GQYGLEAAFRSVFPIQSYSGNSE 67 K FGK L +P+LL++Q+DS++KF+++ GLE F +VFPI+ ++ + Sbjct: 6 KQFGKIKISLPIPHLLNLQIDSYEKFLQEGVPEAERRPDEGLEGVFHTVFPIEDFNKTAS 65 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA--PEGTVKDIKEQEVYMG 125 L++VSY +GEP +D EC +G+TY AP+R+K+RLV+Y+ + T++DIKEQ++Y G Sbjct: 66 LEFVSYEIGEPKYDQAECISKGLTYEAPMRIKVRLVVYDADEASGNRTIRDIKEQDIYFG 125 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 +PLMT+ GTF+INGTERVIV+QL RSPG+ F+ D GKTH+S KVLY+ R+IP RGSWLD Sbjct: 126 TLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDGGKTHTSRKVLYSCRVIPMRGSWLD 185 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFE-IRDNKLQMELVPE 244 F+FD KD L+VRIDRRRK+PATI+ +A+ + EQILD F+ + + N + E+ E Sbjct: 186 FDFDHKDILYVRIDRRRKMPATILFKAMGMSKEQILDYFYTQETYRLEERNTIFWEVRKE 245 Query: 245 RLRGETASFDIEANG-KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 R + A DI + V V+ G+ IT R R + + ++ IE+ + + G +A D D Sbjct: 246 LYRKDNAYADIVDSEGNVIVKAGKPITKRSWRLICEAGIEAIEMRPDTLDGMFLAGDVAD 305 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 TGEL+ A E++ LL ++ +G R+ L T D I +TL +D D+L A Sbjct: 306 PKTGELLAEAADEITPGLLDRMRDAGINRVSVLHTKGNDTSSSIRDTLMLDRIPDQLKAQ 365 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 EIYR +RP PPT E A S F+NLF + D YDLS VGR K N+ L +E L+ + Sbjct: 366 EEIYRRLRPSSPPTAEIAASFFDNLFRNPDYYDLSPVGRYKLNQRLSLDEPSDLRTLTDN 425 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 DI+ +K L+ +++ G DDIDHLGNRR+R VGE+ ENQ+R+GLVR+ERA+KER+SL + Sbjct: 426 DILTAIKVLVHLKDSHGPADDIDHLGNRRVRLVGELVENQYRIGLVRMERAIKERMSLQE 485 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 + TLMP D+IN KP++A +KEFFG+SQLSQFMDQ N LSE+THKRR+SALGPGGLTRERA Sbjct: 486 ISTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNSLSEVTHKRRLSALGPGGLTRERA 545 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 GFEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N+YGF+ETPY V +G VTDE+ Sbjct: 546 GFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTFAKVNDYGFIETPYHVVREGRVTDEV 605 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 +L A EG+ V+AQAN+ LDE+G+ V++ VT R KGE + RD+V MD+S Q+VS+ Sbjct: 606 LHLDASREGDQVVAQANALLDEQGNLVDEFVTVRVKGEVEMRHRDEVTLMDISPSQMVSI 665 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 A+LIPFLEHDDANRALMG+NMQRQAVP LR++KPLVGTGME VA DSG VA G Sbjct: 666 SAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPLVGTGMEVDVARDSGACIVAPADGK 725 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 ++YVDA RIV+ E ++Y + G+ Y+L KY +SNQN+C Q P G+ V++G +L Sbjct: 726 IEYVDADRIVVA-YEGDVYKKQGGVRAYDLLKYHKSNQNSCFGQKPSCHPGQIVKKGQIL 784 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 ADGP D GELALG+N+ VAFMPW GYN+EDSIL+SER V+ED FT+IHI+E V+RDT Sbjct: 785 ADGPGIDDGELALGKNLVVAFMPWCGYNYEDSILISERTVKEDVFTSIHIEEFEVVARDT 844 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 KLGPEEIT DIPNV E L LDESGI+ IGA V DILVGK+TPKGETQLTPEEKLLR Sbjct: 845 KLGPEEITRDIPNVSEDMLRNLDESGIIRIGAAVKPDDILVGKITPKGETQLTPEEKLLR 904 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 AIFGEKA DVK++SL+VP GV GT+IDV+VF R EKD R L IE + ++ Sbjct: 905 AIFGEKARDVKNTSLKVPPGVEGTIIDVKVFNRRSGEKDDRTLAIEGHDTAVLDQKEADH 964 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG-------------------LTD 1004 ++ L + + +V V A K + +E G Sbjct: 965 MRALTDRTRALLIPHVVGKQVAASLPGKKKGEVLVEAGAALTEEMLASLPVKKLSGLFKS 1024 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 +E + + ++ + YD+ ++KR K+T+GDDL PGV+K+VKV++A+KR++ GD Sbjct: 1025 KEVNDAVAEILKPYDQQVDYLHAIYDSKREKVTEGDDLPPGVIKMVKVHIAIKRKLSVGD 1084 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGV+S I P EDMP+ +G PVDIVLNPLGVPSRMNIGQI+ETHLG AK + Sbjct: 1085 KMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWGAKEL 1144 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G ++ +L + LR+ ++ + + + DEE LR G+ T Sbjct: 1145 GRQLAELLDSGAAMQVLRDEVKSIF---SSDDINALVDEMDDEEFKASVSKLRNGIVTKT 1201 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 PVFDGA E EI ++ L G+ LYDGRTGE F+ VT G MYMLKL+HLVD+K+H Sbjct: 1202 PVFDGATEEEIWSWMERAGLANDGKTTLYDGRTGEAFKNRVTTGVMYMLKLHHLVDEKIH 1261 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARSTG YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAY LQE LTVKSDDV GR KM Sbjct: 1262 ARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVKM 1321 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 Y+ IV G++ +E G+PESFNVL+KE+ SLG+N+ L E Sbjct: 1322 YEKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQE 1359 >UniRef50_C0Q9X9 DNA-directed RNA polymerase subunit beta n=60 Tax=Bacteria RepID=RPOB_DESAH Length = 1401 Score = 1240 bits (3209), Expect = 0.0, Method: Composition-based stats. Identities = 711/1397 (50%), Positives = 948/1397 (67%), Gaps = 59/1397 (4%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSV 56 M S KRIRK+FG + +V+D+P L+ +Q SF++F++++ G+ F+SV Sbjct: 1 MTGSLLASKRIRKEFGSKSRVVDIPDLIGMQRTSFERFLQRNVPPEEREDIGIHLVFKSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV-- 114 PI+ ++G S L+YVSY GE ++EC RG+TY P+ + +RLV+Y+ + G Sbjct: 61 LPIKDFTGTSSLEYVSYSFGETKHSMKECISRGMTYEIPVNITVRLVVYDVDKDAGVTSI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 +DIKEQE+Y G IPLMT GTF+INGTER +VSQLHRS GVFFD DKGK+HSSGK++Y A Sbjct: 121 RDIKEQEIYFGTIPLMTKRGTFIINGTERAVVSQLHRSSGVFFDHDKGKSHSSGKIIYTA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 RIIP RGSW+D E DPKD + +RIDRRRK P TI+ +A YT E IL F++K +D Sbjct: 181 RIIPVRGSWIDMEIDPKDIVNIRIDRRRKFPVTILFKAFGYTNEDILSFFYKKEQIVKKD 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 L E P+ L+ ASFDI G+ V+KGR T R ++QL+ +K I + E I Sbjct: 241 GILFKEFNPDNLKRNRASFDILDPETGEAVVKKGRLFTLRALKQLQVAGLKSIPISEEDI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ A + T E++ A + ++L K++ +G L+ + + +TL Sbjct: 301 IGRGFATSVVHPETEEILAKAGSLIDPEVLEKIADAGITEFSILYVDTYSSDS-MRKTLA 359 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 VD R AL+EIYR +RPG P T E A+ ++LFF YDLS VGR+K N L Sbjct: 360 VDKVTSRAEALIEIYRRLRPGNPATPEVAQDFIDHLFFKPAYYDLSNVGRLKMNHRLGMS 419 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L ++DI+ L+++++ +G VDDIDHLGNRR+R+VGE+ ENQ+R+GLVR+E Sbjct: 420 TGIDVRTLRREDILLTAATLVELKDTQGAVDDIDHLGNRRVRAVGELLENQYRIGLVRME 479 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 RA+KER+S+ ++D +MP D++N KP+SA V+EFFG+SQLSQFMDQ NPLSE THKRR+SA Sbjct: 480 RAIKERMSMQEVDAMMPHDLVNPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSA 539 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGLTRERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI SL YA+ N++GF+ETPYR Sbjct: 540 LGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIETPYR 599 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 DGVV+ +I +LSA EE + IAQAN+ LD++GH + DLVT R GE + +++ +++ Sbjct: 600 IAKDGVVSKQITHLSAFEEKEHPIAQANAVLDDQGHLMNDLVTSRVGGEFEMVAKNDIEF 659 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 MDVS Q+VSV ASLIPFLE+DDANRALMG+NMQRQAVP +R++ PLVGTG+E VA DS Sbjct: 660 MDVSPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGIEGVVARDS 719 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 GV VA+ G+V VDA RIV+K E+ + + IY +K+ RSNQNTC N P V Sbjct: 720 GVAIVAEHDGIVVDVDAKRIVVKNTENGKGSDDRTVTIYTASKFVRSNQNTCFNHRPIVK 779 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 G+ V +G+V+ADGPST++GELALG+N+ VAFMPW GYN+EDSILVSER+V+E +T++H Sbjct: 780 KGDAVRKGEVIADGPSTEMGELALGKNVTVAFMPWGGYNYEDSILVSERLVKEGVYTSVH 839 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 ++E V+RDTKLG EEIT DIPN GE AL LD+SGI+ +GAEV GDILVGK+TPKGE Sbjct: 840 VEEFEVVARDTKLGKEEITRDIPNAGEEALKDLDDSGIIRLGAEVKPGDILVGKITPKGE 899 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ 952 TQL+PEEKLLRAIFGEKA DVKD+SLRVP GV G V +VF+R G+ KD R IE+++ Sbjct: 900 TQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVTAAKVFSRRGLPKDDRTRLIEDLE 959 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGG------------------VEAEKLDKLPR 994 +++ +KD +E++I+ + R+ +L V + + Sbjct: 960 IEKLEKDRDDEVRIITETIQERLEDILAGQALQAVVKKGKKVVVPAGTLVTRGLFEGISL 1019 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + L + D + E+ + + + + + +GDDL PGVLK++K+ + Sbjct: 1020 TDLMGLTVEDSSLTEMAHVILEKAETQIKKARENFNNQASRYEKGDDLPPGVLKLIKINV 1079 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A+KR + GDKMAGRHGNKGV+S+I P+ D+PY E+G VD+VLNPLGVPSRMN+GQILE Sbjct: 1080 AMKRVLSVGDKMAGRHGNKGVVSRILPVADLPYFEDGRTVDMVLNPLGVPSRMNVGQILE 1139 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVA-------KLREFIQRAYDLGADVRQKVDLST---- 1163 HLG AA+G+G +I+ ++ +++ + + + + D S+ Sbjct: 1140 IHLGCAARGLGRQIDDLIYEKKTDELRARIKRIFTTPLIKTGERANKDKTHYDFSSHYTV 1199 Query: 1164 ---------------------FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 D E + A + G+ +ATPVFDGA E+EIK L+ Sbjct: 1200 EKSMAKRTNEEEIQFVDTIDHMDDTEFLEFASMYKNGVHMATPVFDGAAESEIKSLISYA 1259 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 L SGQ LYDGRTGE F++P+TVG MYMLKL+HLVDDK+HARS G YSLVTQQPLGGK Sbjct: 1260 GLDPSGQSTLYDGRTGEPFDKPITVGIMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGK 1319 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES 1322 AQFGGQR GEMEVWA+EAYGAA+ LQE +TVKSDD+ GRT+MY+ IV G + +EPGMPES Sbjct: 1320 AQFGGQRLGEMEVWAMEAYGAAHALQEFITVKSDDMTGRTRMYEKIVKGQNVLEPGMPES 1379 Query: 1323 FNVLLKEIRSLGINIEL 1339 F VL KE++SLG++I L Sbjct: 1380 FRVLTKELQSLGLDINL 1396 >UniRef50_C1F3Y3 DNA-directed RNA polymerase n=48 Tax=Bacteria RepID=C1F3Y3_ACIC5 Length = 1496 Score = 1213 bits (3137), Expect = 0.0, Method: Composition-based stats. Identities = 729/1473 (49%), Positives = 956/1473 (64%), Gaps = 152/1473 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAA---------FRSV 56 R R DF K P + +P L+ +Q S+++F++ D GL++ FR++ Sbjct: 9 RSRLDFSKIPTSIKIPNLIEVQRRSYERFLQMDKLPTEREDNGLQSVFTSVFPIADFRNI 68 Query: 57 FPIQSYS---GNSELQYVSYR----------------LGEP------------------- 78 + GN E + + + +P Sbjct: 69 SQLDFVDYSIGNWECKCGHLKGLHHLRTACTHCGNMVITDPFHPGDVLCQKCGTYNKNTP 128 Query: 79 --------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE--GTVKDIKEQEV 122 +D EC+ RG+T+SAPL+V +RL IY+++ T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDQAECEERGMTFSAPLKVTVRLTIYDKDPETGAKTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G+IPLMT NGTF++NGTERVIVSQLHRSPGVFF+ ++ + + +IIPYRGS Sbjct: 189 FFGDIPLMTQNGTFIVNGTERVIVSQLHRSPGVFFE------TANNRTYFLGKIIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQME- 240 W++FE+D K+ L+VRIDR+RK TI LRAL + E+IL F+ +++D KL Sbjct: 243 WVEFEYDQKNTLYVRIDRKRKFLGTIFLRALGLKSDEEILKTFYTVDRIQVKDGKLYWTV 302 Query: 241 ---LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV 297 P L G + + NG+ V GR+ITA ++ + + ++ IE+ + G + Sbjct: 303 AEAGTPTHLLGAKPAHAVVHNGQEIVHSGRKITASVLKAIREAKLEQIEIDTTDLDGAMT 362 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 A D ID TGE++ AN EL+ D L K+ ++G +E F D G I+ TLR D Sbjct: 363 AADVIDTETGEVLLEANHELTPDKLHKIVEAGIPTVEVFFPERDDVGNIITNTLRRDSVR 422 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE---EI 414 AL+EIYR +RPG+PPT + A +LFE +FF +YD S VGR+KFN L Sbjct: 423 KPEEALIEIYRKLRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYENAEETP 482 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 L+ D ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+ERA Sbjct: 483 LDHRTLTAGDFYSTIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIGLVRMERA 542 Query: 475 VKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 +KE++S ++ T MP D+INAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 543 IKEKMSVYQEMSTAMPHDLINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSAL 602 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS +A+ NEYGF+E+PYR+ Sbjct: 603 GPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEYGFIESPYRR 662 Query: 594 VTDGVVTDEI------------------------------------------HYLSAIEE 611 V DG V D + YLSA EE Sbjct: 663 VRDGQVLDFVAVTNAGESGLRVGDYLEKAEALKLNDKLRAEKKRIIEFEPFSFYLSAWEE 722 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 + IAQAN LDE H VEDLV R +G L +R++VDY+DVS +Q+VSV ASL+PFL Sbjct: 723 DRHTIAQANVKLDENKHIVEDLVNARRQGNFVLVNREEVDYVDVSPKQLVSVAASLVPFL 782 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EHDDANRALMGANMQRQ+VP L ++ PLVGTGME A DSG +A+R GVV VD+ R Sbjct: 783 EHDDANRALMGANMQRQSVPLLVSEAPLVGTGMEGVTARDSGAVILARRNGVVDSVDSER 842 Query: 732 IVIKVN---EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 I+++V E G DIY L K+ RSNQNTCINQ P V G+ V +G V+ADGP Sbjct: 843 IIVRVEGEHHPTQLSREVGSDIYQLIKFKRSNQNTCINQKPIVRKGDRVLKGQVIADGPC 902 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 T+ GEL LG+N+ VAFMPW GYNFED+IL+SE++V+ED +T++HI+E +RDTKLGPE Sbjct: 903 TEQGELGLGRNVLVAFMPWRGYNFEDAILISEKLVKEDYYTSVHIEEFEIEARDTKLGPE 962 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 EIT DIPNV E AL LDESGI+ IGA+V DILVGKVTPKGETQLTPEEKLLRAIFGE Sbjct: 963 EITRDIPNVSEHALRDLDESGIIRIGAKVKHNDILVGKVTPKGETQLTPEEKLLRAIFGE 1022 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE 968 KA DV+D+SL P G+ GTV+DV++F+R G EKD+RA +IE Q+ + +K+L +E++IL Sbjct: 1023 KAGDVRDASLTCPPGIEGTVVDVRIFSRKGQEKDERAKQIEAEQVAKLEKNLEDEIRILT 1082 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWL----------------------ELGLTDEE 1006 R+ A+L V A+ D+ R L D Sbjct: 1083 DERLKRLEAILGGKVVLADLHDERTNKRLLVKDAVLDRDAIERISTRNLKRIRYADKDPR 1142 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 Q++++ E K + K+ +GD+L+PGV+K+VK+Y+A+KR++ GDKM Sbjct: 1143 VNEQIDEIEEMTSRQIDVLRKITNERIAKLQKGDELSPGVIKMVKIYIAMKRKLSVGDKM 1202 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKGVI++I P EDMPY +GTPV+IVLNPLGVPSRMN+GQILETHLG AA +G Sbjct: 1203 AGRHGNKGVIARILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAHDLGV 1262 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 ++ A++KQ Q+ +RE I+ + A + Q + DE+++R+ + +G+ T V Sbjct: 1263 QVAAIVKQHQDANVIREVIKERFKGTAVINQLI---ELEDEQLLRVGAGMARGIWFGTAV 1319 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 FDGAKE EIK LL+ LPTSG+ +L+DG TGE FE+PVTVG++YMLKL+HLVDDK+HAR Sbjct: 1320 FDGAKEEEIKALLESAGLPTSGKTKLFDGMTGEAFEQPVTVGFIYMLKLSHLVDDKIHAR 1379 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 S G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+Y+ Sbjct: 1380 SIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIYE 1439 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1440 AIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1472 >UniRef50_Q1IHH4 DNA-directed RNA polymerase subunit beta n=133 Tax=cellular organisms RepID=RPOB_ACIBL Length = 1489 Score = 1187 bits (3070), Expect = 0.0, Method: Composition-based stats. Identities = 730/1475 (49%), Positives = 958/1475 (64%), Gaps = 154/1475 (10%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAA---------FRSV 56 R R+DF K P + +P L+ +Q S+ +F++ D GL+A FR+V Sbjct: 9 RNRQDFSKIPATIQIPNLIEVQKRSYDRFLQMDLLPSERDDAGLQAVFQSVFPITDFRNV 68 Query: 57 FPIQSYS---GNSELQYVSYR--------------------------------------- 74 ++ GN E + + Sbjct: 69 SQLEFVDYAIGNWECKCGHLKGLHHLRTTCKNCGATVVTDPFHPGDVLCHKCGTFNANTP 128 Query: 75 -----LGEP-----VFDVQECQIRGVTYSAPLRVKLRLVIYER--EAPEGTVKDIKEQEV 122 G+P +DV EC+ RG+TYSAPL+V +RL I+++ E T++DIKEQEV Sbjct: 129 DFCNKCGDPVGLQLKYDVAECEERGMTYSAPLKVTMRLTIFDKDPETNNRTIRDIKEQEV 188 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 + G++PLMT NGTF+INGTERVIVSQLHRSPGVFF+ ++ + + +IIPYRGS Sbjct: 189 FFGDVPLMTQNGTFIINGTERVIVSQLHRSPGVFFE------TANNRTYFLGKIIPYRGS 242 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMEL 241 W++FE+D K+ L+VRIDR+RK TI LRAL T E IL F+ ++D KL L Sbjct: 243 WVEFEYDQKNILYVRIDRKRKFLGTIFLRALGLRTDEDILRTFYTVDRIAVKDKKLYWTL 302 Query: 242 VPER-----LRGETASFDIE-ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 P L G S I+ NG+ GR++TA +++++K + +E+ + + G Sbjct: 303 EPGIERPTNLVGLKLSHAIKAKNGEEVAHSGRKVTASVLKEIQKHKISELEIELGDLEGA 362 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 VA D ID +TGE++ AN EL+ D L+K+ +G + F D G IS TLR D Sbjct: 363 YVASDVIDTNTGEVLLEANQELTADKLSKMIDAGIGEVNVFFPERDDVGTVISATLRRDS 422 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR---E 412 AL+EIYR +RPG+PPT + A +LF +FF +YD S VGR+KFN L Sbjct: 423 VKTPQEALIEIYRKLRPGDPPTLDTATALFHGMFFDARKYDFSRVGRLKFNIKLFDRQDP 482 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L DD ++ L+ +R G VDDIDHLGNRR+R+VGE+ ENQFR+GLVR+E Sbjct: 483 TGLDKRTLDPDDFYHTIRYLLKLRRNLGAVDDIDHLGNRRVRAVGELLENQFRIGLVRME 542 Query: 473 RAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 RA+KE++S ++ T MP D++NAKP+ AA++EFFGSSQLSQFMDQ NPLSEITHKRR+S Sbjct: 543 RAIKEKMSVYQEMSTAMPHDLVNAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLS 602 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 ALGPGGL+RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI+SLS YA+ N+YGF+E+PY Sbjct: 603 ALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCYARINDYGFIESPY 662 Query: 592 RKVTDGVVTDEIH------------------------------------------YLSAI 609 R+V G V D + YLSA Sbjct: 663 RRVKGGRVIDYVQVTHAGDSDYRVGDKMEKSEAQKANEELRGRKKRGIELEPYSFYLSAW 722 Query: 610 EEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 EE + IAQAN+ LDE+G +LV R G L SRD +DY+DVS +Q+VSV ASL+P Sbjct: 723 EEDKWTIAQANAELDEKGKITSELVNARKAGNFVLISRDDIDYIDVSPKQLVSVAASLVP 782 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 FLEHDDANRALMGANMQRQ+VP LRA+ P+VGTGME A DSG +A+R G++ VD+ Sbjct: 783 FLEHDDANRALMGANMQRQSVPLLRAEAPIVGTGMEGVTARDSGAVVLARRSGIIDSVDS 842 Query: 730 SRIVIKVN---EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 R++++V E G DIY LTK+ RSNQNTCINQ P V G+ V++G V+ADG Sbjct: 843 ERVIVRVEGEHHPMQLSREVGSDIYQLTKFKRSNQNTCINQKPIVKQGDHVKKGQVIADG 902 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 P TD GEL LG+N+ V+FMPW GYNFED+ILVSE++V+ED +T++HI+E +RDTKLG Sbjct: 903 PCTDHGELGLGRNVLVSFMPWRGYNFEDAILVSEKLVKEDYYTSVHIEEFEIEARDTKLG 962 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 PEEIT DIPNV E+AL LDESG++ IGA V GDILVGKVTPKGETQLTPEEKLLRAIF Sbjct: 963 PEEITRDIPNVSESALRDLDESGVIRIGAPVKAGDILVGKVTPKGETQLTPEEKLLRAIF 1022 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI 966 GEKA DV+D+SL P G+ G V+DV++F+R G EKD+RA +IE Q+ + +K+L++E++I Sbjct: 1023 GEKAGDVRDASLTCPPGIEGVVVDVKIFSRKGQEKDERAKQIEGTQIAKLEKNLADEIRI 1082 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL----------------------TD 1004 L R+ +L A V+A+ D+ R L D Sbjct: 1083 LTDERLKRLEGLLGAKVVQADLHDERTNKRLLTKDAVLDRETIERISTRNLKRIKYADKD 1142 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 Q++++ E K + K K+ +GD+L PGV+K+VKVY+A+KR++ GD Sbjct: 1143 PRVNEQIDEIEEMTSRQIDVLRKIVREKIEKLQKGDELPPGVIKLVKVYIAMKRKLSVGD 1202 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGVI++I P EDMPY E+GTPV+IVLNPLGVPSRMN+GQILETHLG A + Sbjct: 1203 KMAGRHGNKGVIARILPEEDMPYLEDGTPVEIVLNPLGVPSRMNVGQILETHLGWAGHEL 1262 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G KI + + E ++R+ +++ + A V ++ DE ++++A+ ++ G+ + Sbjct: 1263 GKKIAEFMVENSEAGQVRKHLKQLFKDTAFVDH---VTELDDEMLLKVAKGMQDGVFFGS 1319 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 VFDG+ EAEIK LL LPTSG+ LYDG TG++FE+PVTVGY+YMLKL+HLVDDK+H Sbjct: 1320 AVFDGSTEAEIKSLLDQAGLPTSGKTFLYDGMTGDRFEQPVTVGYIYMLKLSHLVDDKIH 1379 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARS G YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT KSDDV GRTK+ Sbjct: 1380 ARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKI 1439 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Y+ IV G +EPG+PESFNVL++E++SL +++EL Sbjct: 1440 YEAIVKGEAAIEPGVPESFNVLIRELQSLCLDVEL 1474 >UniRef50_B5YFV8 DNA-directed RNA polymerase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFV8_THEYD Length = 1312 Score = 1147 bits (2966), Expect = 0.0, Method: Composition-based stats. Identities = 679/1361 (49%), Positives = 930/1361 (68%), Gaps = 84/1361 (6%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSY 62 + R R +FGK P +++VPYLL Q SF KF+++D GL++A SVFPI Y Sbjct: 3 KPLRERINFGKVPPLVEVPYLLEFQRKSFDKFLQKDIPPEERADEGLQSALNSVFPISDY 62 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT-VKDIKEQE 121 +G + ++++SY +GEP EC ++G+TYS P+++K+RL I++++ +K+ +EQE Sbjct: 63 NGTTTIEFISYSVGEPKLTPYECMVKGLTYSVPIKMKVRLNIWDKDEEGRKFLKESREQE 122 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 V++G++P+MT+ G+F+ING ERVIVSQLHRSPGV+F D+ K+ SG+ LY+ARIIP RG Sbjct: 123 VFLGDLPMMTETGSFIINGVERVIVSQLHRSPGVYFAPDRSKSRISGRFLYSARIIPVRG 182 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 SWLDFEFD KD L+VRID+R+KLPATI+L+AL YT E +L +F+ I+D + Sbjct: 183 SWLDFEFDSKDLLYVRIDKRKKLPATIVLKALGYTNEDLLRIFYPIEEIRIKDETTYTRV 242 Query: 242 VPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 V + L G DI + V++G +IT ++++++ ++ I + I G++ Sbjct: 243 VSDILTGVRTKVDICSADGKDIIVKEGSKITRYSLKKMKELGIQEIPISKSEIIGRITLS 302 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 D +D TGE+I +N E++ + ++ + +++E LF +++++ P + ETL D ++ Sbjct: 303 DIVDPETGEVIVDSNKEITEESFHRIISARIQKLELLFIDNINYLPSLRETLLTDKVENK 362 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL EIY+ +RPGEP T EAAE LF LFF RYDLS+VGR+K N+ L + + Sbjct: 363 KHALREIYKKLRPGEPATEEAAEELFYGLFFDPKRYDLSSVGRLKLNQKLGLDIPLDVRV 422 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+ DII+++K L+++R GKGEVDDIDHLGNRR+R VGE+ ENQFR+GLVR+ERA++E++ Sbjct: 423 LTDKDIIEIVKYLLNLRTGKGEVDDIDHLGNRRVRGVGELLENQFRIGLVRMERAIREKM 482 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 ++ D++T MP D+IN KP+ AAVKEFF +SQLSQFMDQ NPLSEITHKRR+SALGPGGLT Sbjct: 483 TITDVETAMPHDVINTKPVMAAVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLT 542 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RERAGFEVRDVHPTHYGR+CPIETPEGPNIGLI SL+ YA+ N++GF+E+PYRKV +G V Sbjct: 543 RERAGFEVRDVHPTHYGRICPIETPEGPNIGLITSLATYARINDFGFIESPYRKVVNGKV 602 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 T+++H+LSA+E NYVIA+A + +DEEG+ + + V+ R KG+ + SR++V+YMDVS +Q Sbjct: 603 TNDVHFLSALESENYVIAEATTPVDEEGNIIGETVSARVKGDFKMVSREEVEYMDVSPKQ 662 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 +VS+ ASLIPFLE+DDANRALMG+NMQRQAVP + + P+VGTGME A DSG VAK Sbjct: 663 IVSLSASLIPFLENDDANRALMGSNMQRQAVPLIHTEAPIVGTGMELYAARDSGWLVVAK 722 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 R G+V+ VD+ RIVI+V E+ G+DIYNL K+ +SNQ TC+ Q P V +G+ VER Sbjct: 723 RAGIVENVDSRRIVIRVTEE-----GGGVDIYNLVKFHKSNQGTCMTQKPIVKVGQTVER 777 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 G +LADGP D GELALG+N+ VAFMPW GYNFED+ILVSER+V+ED +T+IHI E Sbjct: 778 GTILADGPCMDNGELALGRNVLVAFMPWGGYNFEDAILVSERLVKEDVYTSIHIDEFEIE 837 Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 RDTKLGPEEIT +IPNV E L LDE GI+ IGA+V GDILVGKVTPKGE LTPEE Sbjct: 838 CRDTKLGPEEITREIPNVNEELLKNLDEDGIIRIGAKVKAGDILVGKVTPKGERVLTPEE 897 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKD 959 KLL AIFGEKA DVK+S L VP G+ G VIDV++ TR G EK +RA IEE ++K+ ++D Sbjct: 898 KLLYAIFGEKAEDVKESCLYVPPGIEGVVIDVKILTRKGKEKSRRANAIEEEEIKRIERD 957 Query: 960 LSEELQILEAGLFSRIRAVLVA----GGVEAEKLDKLPRDR--------------WLELG 1001 +E++IL+ SRIR +L V+ + P+ + L+L Sbjct: 958 REDEIRILKETKASRIRKILKGKIILEDVKKGEKIICPKGKALTEKVVNLLDVNQLLKLK 1017 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 + D + + ++ ++ ++ ++ + K K +I +GD+L PGV +IVKVY+A+KR+ Sbjct: 1018 VEDPDVKAEVSRVNKEVEQNIKQIYAKYNEKIERIKKGDELPPGVNQIVKVYIAMKRK-- 1075 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 ++ MA Sbjct: 1076 ---------------------------------------------------IQVGDKMAG 1084 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 + + +M+ + E E + + ++ E G+ Sbjct: 1085 RHGNKGVVSMILPE-EDMPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKALGLY 1143 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 +A+PVF+GAKE EIKE+ + PT+GQ+ LYDG+TGE FERPVTVGYMYMLKL+HLV D Sbjct: 1144 VASPVFEGAKEDEIKEMFRKVGYPTTGQVTLYDGKTGEPFERPVTVGYMYMLKLHHLVAD 1203 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARS G YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGAAYTLQE LTVKSDD+ GR Sbjct: 1204 KIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDITGR 1263 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 T+MY+ IV G+ +EPG+PESFNVL+KE++SL ++++L ++ Sbjct: 1264 TRMYEAIVKGHPVLEPGVPESFNVLIKELQSLCLDVDLLEK 1304 >UniRef50_Q5GRY9 DNA-directed RNA polymerase subunit beta' n=1189 Tax=cellular organisms RepID=RPOBC_WOLTR Length = 2839 Score = 1134 bits (2932), Expect = 0.0, Method: Composition-based stats. Identities = 671/1422 (47%), Positives = 900/1422 (63%), Gaps = 96/1422 (6%) Query: 12 RKDFGKRPQVLD-VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 R + + + D + L+ +Q +S++ F G LE+ FRSVFPI + +++ Sbjct: 16 RISYSRSIDLKDSLLDLVKVQKESYKSF-TPGNHGNERLESIFRSVFPINDPLHRATIEF 74 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK------------ 118 +S R+ P +D EC RG+T+SA + +RLVI + K IK Sbjct: 75 ISCRIDNPKYDESECIKRGITFSARVIASIRLVIMQDGISLDEYKSIKGSGDHSKLSTII 134 Query: 119 ----EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 EQEV+ E+P+MTD GTF+ING E+VIVSQ+HRSPGVFFDSDKGKT++SGK++Y+A Sbjct: 135 KFIGEQEVHFCELPMMTDKGTFIINGVEKVIVSQMHRSPGVFFDSDKGKTYNSGKLIYSA 194 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLD EFD KD L+ RIDR+RKLP +++L+AL + ILD F+EK+ + Sbjct: 195 RVIPYRGSWLDIEFDVKDLLYFRIDRKRKLPISVLLKALGLSNSDILDRFYEKIKYIKYK 254 Query: 235 NKLQMELVPERLRGETASFDIEANG-KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 N ++ VP++ +G FD+ V + RIT+R ++L D++K VP + I Sbjct: 255 NSWKVPFVPDKFKGVRLPFDLMDVEGNVLFKANVRITSRLAKKLHDDELKEYLVPFDSIC 314 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G +A+D ID + I +A + ++ + KL I L ++L GPYI TL + Sbjct: 315 GLFLAEDLIDSVSSTKILSAGESIKIEDVKKLELLSIGEISVLNIDNLSVGPYILNTLFL 374 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 D AL EIY+++RPGE P E E F NLFF+ + YDLS +GR+K N L + Sbjct: 375 DENMSYQDALYEIYKVLRPGEVPVLEIVEEFFHNLFFNPEYYDLSNIGRLKLNSYLGLDY 434 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 E +L+ +DII++++K++ +R+G+G VDDIDHLGNRR+RSVGE ENQFR GL+++ER Sbjct: 435 DEDLTVLTHEDIIEIVRKIVLLRDGQGSVDDIDHLGNRRVRSVGEFIENQFRAGLLKLER 494 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 AV + +S LD + D IN K ++ +++FF SSQLSQFMDQ NPLSEITHKRR+SAL Sbjct: 495 AVIDSMSTSSLDKVSSPDFINPKVLTNVLRDFFNSSQLSQFMDQTNPLSEITHKRRLSAL 554 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGLTR+RAGFEVRDVHPTHYGR+CPIETPEG NIGLINSL++YA+ N+YGF+E+PYRK Sbjct: 555 GPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARVNKYGFIESPYRK 614 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V + V TD+I YLSAI+EG Y IA A++ LD F++D++ CR G + S DQV Y+ Sbjct: 615 VINRVATDQIEYLSAIDEGLYYIADASAKLDNNNRFIDDMLYCRYAGNFVMVSSDQVSYI 674 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DVS +QV+SV ASLIPFLE+DDANRALMG+NMQRQAVP L+ PLVGTG+E VA SG Sbjct: 675 DVSPKQVISVAASLIPFLENDDANRALMGSNMQRQAVPLLKPTAPLVGTGIESFVASGSG 734 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 +AKR G+V D++ IVI+ ++E G+DIY+L K+ RSN NTCINQ P V + Sbjct: 735 AVVLAKRDGIVDSSDSNSIVIRAFDEERVNY-LGVDIYHLKKFQRSNHNTCINQKPLVRI 793 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 G+ V+ GDV+ADGP+ + GELALGQN+ VAFM W GYNFEDSI++S +V++D FT+IHI Sbjct: 794 GDYVKEGDVIADGPAINSGELALGQNLLVAFMSWQGYNFEDSIIISSEIVKKDLFTSIHI 853 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 +E CV DT LG E+IT IP V E L LD SGIV IG V G ILVGK+TPK Sbjct: 854 EEFECVVHDTPLGSEKITRAIPGVNEENLYHLDNSGIVKIGTRVGPGYILVGKITPKPSL 913 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 L PE KLL IFGEK+ D DSSL V GTVIDVQVFTR GVE+++RAL I++ ++ Sbjct: 914 LLPPETKLLMTIFGEKSFDCADSSLYTSPDVEGTVIDVQVFTRRGVEENERALLIKQKEM 973 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVL-VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 +K+ + + + ++ +L + + EKLD + R++W +GL + Q++ Sbjct: 974 NDLEKERDYIINVASEYFYDELKKLLVHSCSQDQEKLDAIEREQWWGIGLKNRSISEQVK 1033 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 L + +D+ + + K K+ +G DL GVL VKV++AVK +QPGDKMAGRHGN Sbjct: 1034 NLKKDFDKKVSNTIAQFKQKVEKLDEGYDLPQGVLMSVKVFIAVKHSLQPGDKMAGRHGN 1093 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KGVIS++ P+EDMPY E+GTPVDI+LNPLGVPSRMN+GQILETH+G A K +G+++ +L Sbjct: 1094 KGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQILETHVGWACKKLGERVGNIL 1153 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 E+ K+ + D + + D + + + G Sbjct: 1154 ---DEINKINSDFCKEIRSLDDNNFAKFAAVYFDNKKTEEVRDDEITDSLVNIPNKGLLN 1210 Query: 1193 AEIKELLKLG----------------DLPTSGQIRLYDG-----------------RTGE 1219 E+ L++ ++ + G R G Sbjct: 1211 DELNALVENYLNSCKSAYDNLRSFLIEVYSCGSDVSICNNIRDISNSNLIEFAHKLRNGI 1270 Query: 1220 QFERPVT---------------------------------------VGYMYMLKLNHLVD 1240 PV VGYMYMLKL+HLVD Sbjct: 1271 PVAAPVFEGPKDKNIIKLFTLAGLDPSGQTEAYDGRTGEKFDRKVTVGYMYMLKLHHLVD 1330 Query: 1241 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1300 DK+HARS G YSLVTQQPLGGK+ FGGQRFGEME WAL+AYGAAYTLQEMLTVKSDD+NG Sbjct: 1331 DKIHARSVGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDING 1390 Query: 1301 RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R K+Y++I+ G+ E G PESFNV++KE+RSL +N+ L+ Sbjct: 1391 RVKIYESIIKGDSNFECGTPESFNVMIKELRSLCLNVALKQN 1432 >UniRef50_B2UUV9 DNA-directed RNA polymerase subunit beta' n=5926 Tax=root RepID=RPOBC_HELPS Length = 2890 Score = 1123 bits (2904), Expect = 0.0, Method: Composition-based stats. Identities = 627/1379 (45%), Positives = 888/1379 (64%), Gaps = 48/1379 (3%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M K R+R DF K P L+VP LL +Q DS+ F+ + G+E F+S+FPIQ Sbjct: 1 MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQ 60 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA---PEGTVKDI 117 L+Y G+ + V+E RG+TYS PL++K+RL+++E++ + +KDI Sbjct: 61 DEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDI 120 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177 KEQ +++ EIPLMT+ +F+ING ERV+V+QLHRSPGV F ++ + S K++Y +II Sbjct: 121 KEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEES-STSLNKLIYTGQII 179 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 P RGSWL FE+D KD L+ RI++RRK+P TI+ RA++Y + I+ +F+ V ++K Sbjct: 180 PDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKY 239 Query: 238 QMELVPERLRGETASFDIE-ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 + + FD++ GKV + G+++T+R I++L+++ ++ +E P++ + + Sbjct: 240 LIPFA-SLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRH 298 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ + E++ +L + L K+ G + + L H I ++ D Sbjct: 299 LAEPVMVGK--EVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSE 356 Query: 357 NDR----------LSALVEI--YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 + + +AL I +++M+PG+P T E A+ + LFF +RYDL+ VGRMK Sbjct: 357 SLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMK 416 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 N L + L+ +DII +K L+ I+N +G++DD DHLGNRRIR+VGE+ N+ Sbjct: 417 MNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANEL 476 Query: 465 RVGLVRVERAVKERLSLGD--LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 GLV++++ +K++L+ D+LMP D++N+K I++ + EFF QLSQFMDQ NPLS Sbjct: 477 HSGLVKMQKTIKDKLTTMSGTFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLS 536 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 E+THKRR+SALG GGL ++R GFE RDVHPTHYGR+CPIETPEG NIGLIN+LS + + N Sbjct: 537 EVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVN 596 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 + GF+E PY+KV DG V E YL+AI+E +++IA A++ +DEEG+ + DL+ R +GE Sbjct: 597 DLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEI 656 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 L + +V MD+S+ +V V ASLIPFLEHDDANRALMG NMQRQAVP LR D P+VGT Sbjct: 657 VLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRNDAPIVGT 716 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 G+E+ +A DS A R GVV+ +D+ I I E ID Y+L K R+NQN Sbjct: 717 GIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAY----IDAYSLQKNLRTNQN 772 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 T NQ+P V +G+ VE G ++ADGPS D GELALG+N+RVAFMPWNGYNFED+I+VSER+ Sbjct: 773 TSFNQIPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERI 832 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 ++D FT+ HI E +R+ K G EE TADIP+V E AL+ LDESGIV +G V+ G I Sbjct: 833 TKDDIFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMI 892 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 LVGK +PKGE + TPEE+LLRAIFG+KA V + SL P + GTVIDV+VFT+ G EKD Sbjct: 893 LVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKD 952 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA---------GGVEAEKLDKLP 993 R L E + + + + L +L R+ ++L G + ++ D++P Sbjct: 953 ARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIP 1012 Query: 994 RDRWLEL---------GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 ++ + +E QN E + E K ++ E K + + D L Sbjct: 1013 KEEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPN 1072 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 GV+K VK+Y+A KR+++ GDKMAGRHGNKG++S I P+ DMPY +G PVDIVLNPLGVP Sbjct: 1073 GVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVP 1132 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQ----QEVAKLREFIQRAYDLGADVRQKVD 1160 SRMNIGQILE HLG+ K G +I +ML+ + + + + G D Sbjct: 1133 SRMNIGQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINGKDPLTIHV 1192 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 L + SDEE++ A++ KG+ +A PVF+G + + +L +L + G++ LYDGRTGE+ Sbjct: 1193 LESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEK 1252 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 V VGYMYM+KL+HLVD+K+HARSTG YSLVT QP+GGKA FGGQRFGEMEVWALEA Sbjct: 1253 MRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEA 1312 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 YGAA+TL+EMLT+KSDD+ GR Y+ I G E +PE+F VL KE++SL ++I + Sbjct: 1313 YGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINI 1371 >UniRef50_Q2S1Q5 DNA-directed RNA polymerase subunit beta n=53 Tax=Bacteroidetes RepID=RPOB_SALRD Length = 1287 Score = 1104 bits (2854), Expect = 0.0, Method: Composition-based stats. Identities = 598/1359 (44%), Positives = 830/1359 (61%), Gaps = 122/1359 (8%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 R+ F P+V D P L +QL +F F++ D GL+A F FPI+ Sbjct: 21 RESFADIPEVWDYPDFLDVQLKTFHDFVQDDVPPADREDVGLQAVFNEHFPIKDNRDRYT 80 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L++V+Y L P V+EC +G+TYS PL+ LRL + E + EQEVY+G + Sbjct: 81 LEFVNYELDAPKHTVEECIAQGLTYSIPLKATLRLTS-KEEEGGEEAIEAIEQEVYLGTL 139 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P MTD GTF++NG ERVIVSQLHRSPG FF+ + HS+G L++AR+IP+RGSW++F Sbjct: 140 PFMTDRGTFIVNGAERVIVSQLHRSPGAFFEKEI---HSNGTELFSARVIPFRGSWMEFS 196 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKVIFEIRDNKLQMELVPERL 246 D +D L+ +DR++K+P T +LRAL ++++ +I+ +F +I D E L Sbjct: 197 TDVRDVLWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDEDEF----EEHL 252 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 E A+ + I +++D ++ +E Sbjct: 253 GRELATSVT--------------IEKTIEIVDEDTGEV----------------VDEEME 282 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD---HGPYISETLRVDPTNDRLSAL 363 E++ A EL +L + R+ + + D + ETL+ D ++ AL Sbjct: 283 REVLLPAEHELEEGDWEELDEYDVSRLYLVREDVEDEALDKSTLVETLQKDSSHTEEEAL 342 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 IY +R E P ++A E LFF+EDRYDL VGR + N L + +L+K+ Sbjct: 343 EVIYEKLRGSEAPDLDSAREALERLFFNEDRYDLGDVGRHRMNARLDVDVDTDEKVLTKE 402 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 D++ ++++LI ++NG+ DDIDHL NRR++SVGE +QF +GL R+ R +KER++L D Sbjct: 403 DVVGIVRELIRLQNGESTADDIDHLSNRRVKSVGEQLGSQFSLGLARMARTIKERMNLRD 462 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERA 543 D P+D++NA+ I + + FFG++QLSQFMDQ N L+E+THKRR+SALGPGGLTRERA Sbjct: 463 ADKFTPKDLVNARTIESVINTFFGTNQLSQFMDQTNALAEMTHKRRMSALGPGGLTRERA 522 Query: 544 GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI 603 GFEVRDVH THYGR+CPIETPEGPNIGL+ SL V++ N++GFLETPYR V DG VTD + Sbjct: 523 GFEVRDVHHTHYGRLCPIETPEGPNIGLMLSLCVHSTINDFGFLETPYRVVEDGRVTDRV 582 Query: 604 HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 YLSA EE +AQAN+ + ++GHF D V CR +G+ + ++VDYMDV+ Q+VS Sbjct: 583 EYLSAEEEDQATVAQANAPIGDDGHFERDEVRCRHQGDFPIVEPEEVDYMDVAPNQIVSP 642 Query: 664 GASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGV 723 ASL+PFL H+DANRALMG+NMQRQ VP LR+D P+VGTG+E VA DS VA+ GV Sbjct: 643 SASLVPFLSHNDANRALMGSNMQRQGVPLLRSDSPIVGTGLEGRVAKDSRSCVVAEGEGV 702 Query: 724 VQYVDASRIVIKVNEDEMYPGEA---GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 V+YVDA R+V++ +E++ + Y LTK+ R+NQ TC+NQ P V G+ VE G Sbjct: 703 VEYVDAERLVVRYDEEQDKTDLTFGEPVQEYELTKFRRTNQGTCMNQKPIVQAGDRVEEG 762 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 +VL DG + + GELALG+N+ AFMPW+GYN+ED+I++SER+V +D +T++HI+E Sbjct: 763 EVLTDGFAMEKGELALGKNVLCAFMPWHGYNYEDAIVISERLVADDVYTSVHIEEFEHEV 822 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 RDTK G EE+T +IPNV E A LDE GIV +GAE+T GDI+VGK+TPKGET TPEEK Sbjct: 823 RDTKRGEEELTREIPNVSEEATKDLDERGIVRVGAEITPGDIIVGKITPKGETDPTPEEK 882 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVE--------------KDKRA 945 LLRAIFG+KA DVKD+SL+ G+ G VID ++F+R ++ + Sbjct: 883 LLRAIFGDKAGDVKDASLKAKPGMEGGVVIDTRLFSRRELDPASKKMEEKRLENIESDHE 942 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK---LDKLPRDRWLELGL 1002 ++ ++ + +K + AGL R VL+ G + E+ + P D Sbjct: 943 RKLADLNERFWEKFFALVEDATSAGLEDREGEVLLTEGADFEEDAFDEVDPSDLSTRAEF 1002 Query: 1003 T-DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 T DEE +Q+ L Y + + E + ++ ++ GD+L GV+++ KVY+A K++I+ Sbjct: 1003 TEDEELNDQISTLLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAKVYVARKKKIE 1062 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDKMAGRHGNKGVI+KI P+EDMP+ ++GTPVD+VLNPLGVPSRMN+GQI ET LG A Sbjct: 1063 VGDKMAGRHGNKGVIAKIAPVEDMPFLDDGTPVDLVLNPLGVPSRMNLGQIYETLLGWAG 1122 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G K + + + + +++A Q D T Sbjct: 1123 DRLGVKYATPIFDGASLEDVGDELEKAGLPRDGKVQLYDGRT------------------ 1164 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 FD TVG +YM+KL HLV+D Sbjct: 1165 --GEPFDE----------------------------------KTTVGQIYMMKLEHLVED 1188 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 KMHARS G YSL+TQQPLGGKAQFGGQR GEMEVWAL AYGA+ TLQEMLT KSDDV GR Sbjct: 1189 KMHARSIGPYSLITQQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLTFKSDDVEGR 1248 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ Y++IV G + PG+PESFNVL++E++ LG+ + L+ Sbjct: 1249 SEAYESIVKGENLPSPGVPESFNVLVRELQGLGLEVTLD 1287 >UniRef50_Q11QA5 DNA-directed RNA polymerase subunit beta n=6 Tax=Bacteroidetes RepID=RPOB_CYTH3 Length = 1291 Score = 1075 bits (2780), Expect = 0.0, Method: Composition-based stats. Identities = 598/1389 (43%), Positives = 830/1389 (59%), Gaps = 147/1389 (10%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSV 56 M + T + +RK F K ++ P L IQ+ SF+ F + D + GL F Sbjct: 1 MATNNT--QNLRKSFAKTRSTVEYPDFLDIQVRSFKDFFQIDTPAENRFKEGLYKVFAEN 58 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI N L ++ Y + P ++V EC RG+TY+ PL+ KLRL +++ + Sbjct: 59 FPISDSRDNFILDFIDYNIDTPKYNVDECIDRGLTYAVPLKAKLRLTCNDKDNEDFQT-- 116 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 EQEV++G IP MT+ G+FVING ERVIVSQLHRSPGVFF H++G LY+AR+ Sbjct: 117 -IEQEVFLGNIPYMTERGSFVINGAERVIVSQLHRSPGVFFAQS---KHTNGTKLYSARV 172 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDN 235 IP++GSW++F D + +F IDR++K P T +LRA+ Y + + ILDLF E Sbjct: 173 IPFKGSWIEFATDVNNVMFAYIDRKKKFPVTTLLRAIGYGSDKDILDLFGLSEEVEATKA 232 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ++ + GR++ AR +R +D V Sbjct: 233 NIKKAI------------------------GRKLAARVLRTWTEDFVDED---------- 258 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD-HGPYISETLRVD 354 + + E++ + + + + + +SG K I + I TL+ D Sbjct: 259 --TGEVVSIDRNEVLLERDSIIKEEDINIIVESGSKSIILHREDVNIADYTIIYNTLQKD 316 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 +N A+ +IYR +R + P + A + NLFFS+ RYDL VGR + N+ L Sbjct: 317 NSNSEKEAVEQIYRQLRNTDAPDEQTARDIIHNLFFSDKRYDLGEVGRYRINKKLGSGMG 376 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 +L+K+DII+++K LI + N + VDDIDHL NRR+R++GE +QF VGL R+ R Sbjct: 377 SEVKVLTKEDIINIVKYLIGLINSRAVVDDIDHLSNRRVRTMGEQLYSQFSVGLARMART 436 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 +KER+++ D + P D+INA+ +S+ + FFG++QLSQFMDQ NPL+EITHKRR+SALG Sbjct: 437 IKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRMSALG 496 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+RERAGFEVRDVH THYGR+C IETPEGPNIGLI+SL V+A+ N GF+ETPYRKV Sbjct: 497 PGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNSMGFIETPYRKV 556 Query: 595 TDGV--VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 DG+ V ++ +L+A EE IAQAN+ D+ G+F+ D + R +G+ + + D+VD Sbjct: 557 IDGIVDVKNQPVFLTAEEEDGAHIAQANAMYDDNGNFISDRIKARYEGDFPVIAPDKVDL 616 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 +D++T Q+VSV ASLIPFLEHDDANRALMG+NMQRQAVP LR + P+VGTG+ER VA+DS Sbjct: 617 IDIATNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPIVGTGLERRVAMDS 676 Query: 713 GVTAVAKRGGVVQYVDASRIVIKV---NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 +A+ GVV++VDA+ I ++ +ED + ++ I Y+L K+ R+NQ+TCIN P Sbjct: 677 RTLLIAEADGVVEFVDANEIKMRYDLTDEDRLVSFDSDIITYSLIKFRRTNQDTCINLKP 736 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 + GE V++G VL +G +TD GELALG+N+ VAFMPW GYNFED+I++SE+VV++D FT Sbjct: 737 VIQHGERVKKGQVLCEGYATDKGELALGRNLMVAFMPWQGYNFEDAIVISEKVVRDDIFT 796 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 +IHI+E RDTK G EE+T++IPNV E A+ LDE+GI+ GAE+ GDIL+GK+TP Sbjct: 797 SIHIEEFELEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRTGAEIKEGDILIGKITP 856 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE 949 KGE+ TPEEKLLRAIFG+KA DVKD+S++ P + G VID ++F+R +KD R + Sbjct: 857 KGESDPTPEEKLLRAIFGDKAGDVKDASMKAPPSLRGVVIDTKLFSRPKKDKDLRIKSKK 916 Query: 950 EMQLKQAK------------------------------KDLSEELQILEAGLFSRIRAVL 979 +++ + K K E + I A + Sbjct: 917 QVETIKGKYSKDLLALREQMIEKLAALLDGQTSQGVKHKFGDEVISKGVKFSRKNIEANV 976 Query: 980 VAGGVEAEKLDKLPR--------DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 D ++ +D++ + +L + Y ++E K + Sbjct: 977 FPDKNPYRDESNYNVQEEANLLGDLIIDNWTSDKKINENVLRLVKNYLTKRNETAGKFKR 1036 Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 +R + GD+L G++++ KVY+A KR+++ GDKMAGRHGNKGV+++I EDMP+ E+G Sbjct: 1037 ERFTLEVGDELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVVARIVRDEDMPFLEDG 1096 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 TPVDIVLNPLGVPSRMNIGQI ET LG+A K +G K + ++ ++ A Sbjct: 1097 TPVDIVLNPLGVPSRMNIGQIYETLLGLAGKKLGRKYATPIFDGASEEEVINELRDAGLP 1156 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 + VD ++ FD Sbjct: 1157 TIGRTKLVDG--------------------LSGNPFD----------------------- 1173 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 +PVTVG +YM+KL HLVDDKMHARS G YSL+TQQPLGGKAQFGGQRFG Sbjct: 1174 -----------QPVTVGVIYMMKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG 1222 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EMEVWALEA+GAA LQE+LTVKSDDV GR K Y+ IV G + P +PESFNVL+ E+R Sbjct: 1223 EMEVWALEAFGAANILQEILTVKSDDVVGRAKTYECIVKGENLPRPNIPESFNVLVHELR 1282 Query: 1332 SLGINIELE 1340 L + I L Sbjct: 1283 GLALEITLH 1291 >UniRef50_B3E163 DNA-directed RNA polymerase subunit beta n=11 Tax=Bacteria RepID=RPOB_METI4 Length = 1289 Score = 1072 bits (2773), Expect = 0.0, Method: Composition-based stats. Identities = 607/1367 (44%), Positives = 824/1367 (60%), Gaps = 138/1367 (10%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSY 62 +K R +FGK + L +P L+ Q S+ F++ Q GL F VFPI+SY Sbjct: 2 NEKIQRINFGKIREGLSLPNLIEHQTKSYADFLQLSVAPQERKAEGLHGVFLEVFPIESY 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 G +L+YV+Y +GE F +C G TY+APL V RL E +KE++V Sbjct: 62 DGKVKLEYVNYEIGESKFSPIDCLRDGKTYAAPLYVTFRLKDEEG---------VKEEKV 112 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 YMGE+P+MT G+F+ING ERVIV+QLHRSPG+ F+S HS+GK LY+ RIIP RGS Sbjct: 113 YMGELPMMTPQGSFIINGAERVIVNQLHRSPGICFESSF---HSNGKTLYSFRIIPDRGS 169 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 WL+ FD D L+V +DRR+K R TT Sbjct: 170 WLEVAFDTNDLLYVYLDRRKK------RRKFLITTLLRALAAALSGPSSPLG----SGGD 219 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 E +R ++ + + ++ + T + +++ Sbjct: 220 EEIIRLFYTVEELNLSEGI--DEDKVATKVLVSEVKDPH--------------------- 256 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + ++ A ++ ++ +L G + I + D+ + + + L+ DPT D + A Sbjct: 257 --NPDVVLARAYEPVTRSVVRQLLDVGIQSISVV---DVQYDDTLIKCLKKDPTKDPVEA 311 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L EIYR +RPG+PPT A+ L + L RYDL VGR K N+ L + IL+ Sbjct: 312 LKEIYRRLRPGDPPTESNAKLLLKRLLLDPKRYDLGRVGRYKLNQKLNIQVDPDIRILTW 371 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 +D++ + LI +R G+G DDIDHLG+RR+R+VGE+ NQ R+GL R ER VKER++L Sbjct: 372 EDLVAATRYLIKLRKGEGITDDIDHLGSRRVRTVGELVANQCRMGLARTERLVKERMTLF 431 Query: 483 DLDT--LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 D++T + PQ +IN K +SA +++FF SQLSQ MDQ NPLSE+THKRR+SALGPGGL+R Sbjct: 432 DVNTEGMTPQKLINPKALSATIRDFFARSQLSQLMDQINPLSELTHKRRLSALGPGGLSR 491 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 ERAGFEVRDVHP+HYGR+CPIETPEGPNIGLI +++ Y++ N+YG LETPYRKV +G VT Sbjct: 492 ERAGFEVRDVHPSHYGRICPIETPEGPNIGLIATMASYSRFNDYGILETPYRKVLNGKVT 551 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 +EI Y +A +E NYVIA AN+ + E+G ++ V R + E R++V+YMDVS +Q+ Sbjct: 552 NEIVYFTADQEENYVIAMANTAVSEDGTILDQRVAVRFRREFMEVEREKVEYMDVSPKQI 611 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 VSV A LIPFLEHDDANRALMG+NMQRQAVP ++ + P+VGTG+E VA D V++ Sbjct: 612 VSVAAGLIPFLEHDDANRALMGSNMQRQAVPLIQPEAPIVGTGIEERVARDIQAVIVSEV 671 Query: 721 GGVVQYVDASRIVIKVNEDEMYP--------GEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 G V V I++ + E +Y L K+ RSN TCINQ P V Sbjct: 672 DGTVSSVTGKEIIVTPTGSPVEQKKKKSKQGSEREGIVYKLNKFMRSNAGTCINQKPIVK 731 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 G+ V++GDVLADGPST GELALG+N+ VAFMPWNGYNFED+I+VSERVV+ED FT+I+ Sbjct: 732 KGQVVKKGDVLADGPSTQNGELALGRNLLVAFMPWNGYNFEDAIIVSERVVKEDLFTSIY 791 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892 I E V+RDTKLGPEEIT DIPNVG+ AL L GI+ +GAEV GDILVGK+TPK E Sbjct: 792 IDEFEIVARDTKLGPEEITRDIPNVGDEALKNLGPDGIIRVGAEVKPGDILVGKITPKSE 851 Query: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE-EM 951 T+L PEE+LLRAIFGEKA+DVKDSSLRVP+G G V+DV+V + + ++ E + Sbjct: 852 TELAPEERLLRAIFGEKAADVKDSSLRVPSGTYGIVMDVRVSSGTARVRKEKINASEAKQ 911 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE------KLDKLPRDRWLELGLTDE 1005 ++K+ ++ ++ + L L + +L+ + + +P +R + L + Sbjct: 912 KIKEIEERYDQKEEELREELTQALSNILLNEKIPLDVVNVETGEIIIPANRKITKVLLRK 971 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKR-------------RKITQGDDLAPGVLKIVKV 1052 Q + + FE + +I G+D PG++K VKV Sbjct: 972 MAQAYDKIEIDPSPIRSKIFEIIGNFEAKFEQLRNDRELELDQIESGEDTEPGIIKQVKV 1031 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 ++A KR++ GDKMAGRHGNKGV+SKI P+EDMPY +GTPVDIVLNPLGVPSRMN+GQ+ Sbjct: 1032 FIANKRKLSVGDKMAGRHGNKGVVSKIVPVEDMPYLPDGTPVDIVLNPLGVPSRMNVGQV 1091 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 LETHLG+AAK +G + + + K+REF+ +A D T Sbjct: 1092 LETHLGIAAKKLGFNVATPVFDGVKEEKIREFLVKAGMDEDGKSILYDGRTGE------- 1144 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 +++ + V VG +YM Sbjct: 1145 ---------------------------------------MFN--------QRVVVGMIYM 1157 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +KLNH+V DK+HAR+ G YSLVTQQPLGGKAQ+GGQRFGEMEVWA+EAYGAAY LQE+LT Sbjct: 1158 MKLNHMVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEVWAMEAYGAAYILQELLT 1217 Query: 1293 VKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 VKSDDV GRT++Y++IV G + +E PESFNVL+KE++ L + + + Sbjct: 1218 VKSDDVQGRTRIYESIVKGENYLETTTPESFNVLIKELQGLCLEVNI 1264 >UniRef50_B2KEN1 DNA-directed RNA polymerase n=14 Tax=Bacteria RepID=B2KEN1_ELUMP Length = 1270 Score = 1069 bits (2764), Expect = 0.0, Method: Composition-based stats. Identities = 597/1365 (43%), Positives = 824/1365 (60%), Gaps = 167/1365 (12%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSGNSELQ 69 +FG+ L +P LL +Q +SF F++ D GL+AAF VFPI++ G+ +L+ Sbjct: 5 NFGQISSKLSLPDLLDMQKESFVDFLQLDVAPTKRELKGLQAAFEDVFPIEAPDGSMKLE 64 Query: 70 YVSYRLGEPVF-DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 +V Y LG P + Q+ +R TYSAP++ +RL + +R+ G +K+ EQ+V + ++P Sbjct: 65 FVKYELGAPRYSTPQQAALRDGTYSAPMKAVMRLSVKKRD---GKLKEASEQDVTLCDLP 121 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDS-DKGKTHSSGKVLYNARIIPYRGSWLDFE 187 LMTD G FV NG ERV+VSQLHRSPG+ F+ ++ K + GK LY ARIIPYRG+W++F Sbjct: 122 LMTDAGCFVFNGAERVVVSQLHRSPGIIFEEDEEKKQSTLGKKLYVARIIPYRGAWIEFS 181 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 FD + L+VRIDR++K+ AT LRA T QI+ F++ E++ ++ Sbjct: 182 FDIMNALWVRIDRKKKVLATTFLRACGLETNAQIIQAFYDVEDVEVKPAEI--------- 232 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 + + G+ A D +D +T Sbjct: 233 -------------------------------------------DNVVGRYAADDIVDPAT 249 Query: 307 GELICAANMELSLD----LLAKLSQSGHKRIETLFTNDLDHGPYISETLR--VDPTNDRL 360 GE++ + + ++ + ++ + K+++ + N P I TL D Sbjct: 250 GEVLWNLDDKAAMPMDDKIFKEMVERKIKKVKIISGNPRQDDPGILATLENRKDQIRTSK 309 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSE-DRYDLSAVGRMKFNRSL---------- 409 A +IY+ MR + +E AE+ +NL F RYDLS VGR K N+ Sbjct: 310 EAQADIYKKMRGQDFVVKEQAEAFLDNLIFDNIRRYDLSYVGRYKINKKFASLFDIVENL 369 Query: 410 ----LREEIEGSGILSKDDIIDVMKKLIDIRNGK-----------GEVDDIDHLGNRRIR 454 + + LS +DII +K L+ + G+ + DDIDHLGNRR+R Sbjct: 370 KFKKFTKPTDKRRTLSAEDIIVTVKYLLALNAGEDAQKMYGEEIIFKTDDIDHLGNRRVR 429 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 +GE+ ENQ RVGL ++ + ++R++ +L + P+ ++NA+P+ A +K+FFG+SQLSQF Sbjct: 430 GIGELLENQIRVGLSQMAKTARDRMNK-ELASHTPRALVNAQPVQAIIKKFFGTSQLSQF 488 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 MDQ NPLSE+THKRR+SALGPGGL R+RAGFEVRDVH THYGRVCPIETPEGPNIGLI S Sbjct: 489 MDQINPLSELTHKRRLSALGPGGLNRKRAGFEVRDVHHTHYGRVCPIETPEGPNIGLITS 548 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV 634 L+ Y++ N+YG +ETPYRKV G VTD YL+A +E + ++AQ+N+ L + G D+V Sbjct: 549 LACYSKVNKYGLIETPYRKVNSGKVTDNFEYLTADQEDDLMVAQSNTPLTDSGKINTDMV 608 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 +CR + + + S +VDYMDVS QV+SV A+LIPFLEHDDANRALMG NMQRQ VP L Sbjct: 609 SCRVRSDYPIVSPSEVDYMDVSPLQVISVSAALIPFLEHDDANRALMGCNMQRQGVPLLL 668 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 + PLVGTG+E VA DSG T A + G V + A +I ++ E +IY+L Sbjct: 669 TEAPLVGTGIEHEVARDSGATISAAKPGRVVFAAADKIAVEPLEG------GAPEIYDLI 722 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 KY RSNQ+TCINQ P V G+ V++G VLADGP+ G LALG+N+ V FM W GYN+ED Sbjct: 723 KYKRSNQDTCINQRPLVKAGDIVKKGTVLADGPAMKDGFLALGKNLLVGFMSWEGYNYED 782 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 +ILVS ++V+ED FT++H+ E + +R+TKLG EEIT DIPN+G AL+ LD GIV Sbjct: 783 AILVSHKLVKEDVFTSVHLHEFSIDARNTKLGAEEITRDIPNIGAEALAHLDADGIVIPS 842 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 V GDILVGKVTPKGE QLTPEE+LL+ IFG+KA DV D+SLRVP G SG VI +VF Sbjct: 843 TVVEPGDILVGKVTPKGEQQLTPEERLLKVIFGKKADDVVDASLRVPPGTSGKVIGTRVF 902 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 R K+K E+ ++K + + + L+ L+ + + + +A+K + Sbjct: 903 VR----KEKLTKAEEKARIKALEDEKTTNLETLKEQRKLALTNIKDSNVKDAKKEE---- 954 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 E++ Y +L+ + E + QGD+LA V K VKV++ Sbjct: 955 -----------------ERINALYKKLEKRVLEDFEREMEFSKQGDELAVTVNKSVKVFI 997 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR++ GDK++GRHGNKGV++KI P EDMP+ +GTP+DIVL+PLG+PSRMN+GQ+ E Sbjct: 998 ASKRKLMVGDKLSGRHGNKGVVAKILPEEDMPFLPDGTPLDIVLSPLGIPSRMNVGQLFE 1057 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 T LG AAK +G + +RE I++A + Sbjct: 1058 TMLGWAAKNLGYNAATPVFDGPTEETVREEIKKAKKALIEKGVP---------------- 1101 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 + +I LYDGRTG+ FE VT+GYMY++K Sbjct: 1102 -------------------------EKHLPDDYCRITLYDGRTGQPFEEKVTIGYMYIMK 1136 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L HLV+DK+HARSTG YSL+T+QPLGGKAQFGGQRFGEMEVWA+E YGA YTLQE LTVK Sbjct: 1137 LIHLVEDKVHARSTGPYSLITRQPLGGKAQFGGQRFGEMEVWAIEGYGATYTLQEFLTVK 1196 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 SDD GRTKMY++IV G +PG+PESF VL+KE+++LG+++EL Sbjct: 1197 SDDFTGRTKMYESIVRGEAPQQPGVPESFKVLVKELQALGLSVEL 1241 >UniRef50_D1BP72 DNA-directed RNA polymerase n=8 Tax=Veillonella RepID=D1BP72_VEIPT Length = 1386 Score = 1069 bits (2763), Expect = 0.0, Method: Composition-based stats. Identities = 584/1404 (41%), Positives = 792/1404 (56%), Gaps = 154/1404 (10%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M KR R + K +V+ +P+LL IQ S++ F+E GL+ F + PI+ Sbjct: 1 MFKPEQVGKRTRYTYAKINEVIKMPHLLDIQRKSYEWFLES------GLQNIFNDISPIK 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 SGN L + + LGEP +D+ EC+ R TY+APLRV +RLV + E DIKEQ Sbjct: 55 DNSGNLVLSFEGFSLGEPKYDINECKNRDATYAAPLRVNIRLVNNDPENM-----DIKEQ 109 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMTD GTF+ING ERVIVSQL RSPGV+++ + + G LY++ +IP R Sbjct: 110 EVFMGDFPLMTDTGTFIINGAERVIVSQLVRSPGVYYNKEID---TMGNRLYDSTVIPNR 166 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEI------- 232 G+W++ E D + + VRIDR RKLPAT+++RAL + T E ILDLF+ E Sbjct: 167 GAWIELETDASEVVAVRIDRNRKLPATVLVRALGWDTNESILDLFWNGKTDEDGLPVYDE 226 Query: 233 ------------RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLE 278 ++ +E+ + GE + + N ++ + R AR R Sbjct: 227 RIVRTLEKDTTQSADEALVEIYKKLRPGEPPTVESARNLFDNLFFDARRYDLARVGRYKL 286 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 + + + G+ +A+ +D TGE+I A Q G ++++ + Sbjct: 287 NKKLGW----RQRMLGQTLAQPIVDPETGEIILDAG-----------VQVGEEQLDIVAN 331 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 + + G +E Y ++ Sbjct: 332 SHVFDGEGFAE--------------------------------------------FYIVN 347 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 G ++++D+I + L+++ +G G DDIDHLGNRR+R VGE Sbjct: 348 NDGVESKVICNNCNLPYDHRTVTREDMIANISYLLNLMDGAGHTDDIDHLGNRRLRCVGE 407 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + +NQFR+GL R+ER V+ER+++ + +++ PQ +IN +P+ AA+KEFFGSSQLSQFMDQ Sbjct: 408 LLQNQFRIGLTRMERVVRERMTIQETESITPQALINIRPVVAAIKEFFGSSQLSQFMDQT 467 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSLS Y Sbjct: 468 NPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSNY 527 Query: 579 AQTNEYGFLETPYRKVTDGVVT-------------DEIHYLSAIEEGNYVIAQANSNLDE 625 A+ NE+GF+E PYRKV D + Y++A EE IAQANS LD Sbjct: 528 AKVNEFGFIEAPYRKVEKVYGKGKDADKVVKVRVSDSVVYMTADEEEGMTIAQANSPLDA 587 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 EG+F + V CR + + D+VDYMDVS ++VVS+G ++IPFLE+DDANRALMGANM Sbjct: 588 EGYFTTEHVACRRGHDVLEVTPDKVDYMDVSPKEVVSIGTAMIPFLENDDANRALMGANM 647 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 QRQAVP LRA PLVGTGME A DSGV +A+ G V + I + + + Sbjct: 648 QRQAVPLLRAQAPLVGTGMEYTAATDSGVCVLAREAGKVVRCWGNEIHV------LRDSD 701 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 +D Y L K+ RSNQ+TC NQ P V+ G+ V +G VLADGP+TD GELALG N+ VAFM Sbjct: 702 GRVDTYRLNKFLRSNQSTCFNQKPIVNRGDHVVKGQVLADGPATDGGELALGYNVLVAFM 761 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 PW GYN+ED+IL+SE + +ED +T+IHI+E C +RDTKLG EEIT ++PN G+ L L Sbjct: 762 PWEGYNYEDAILLSEELCKEDIYTSIHIEEYECDARDTKLGAEEITRELPNTGDDTLKNL 821 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 DE GI+ IGAEV GDILVGK TPKGET+LTPEE+LLRAIFG+K +V+D+SLRVP+G S Sbjct: 822 DEDGIICIGAEVHPGDILVGKATPKGETELTPEERLLRAIFGDKEREVRDTSLRVPHGES 881 Query: 926 GTVIDVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G V+DV+VFTR +G E ++ + + Q +K + G + V+ + Sbjct: 882 GKVVDVKVFTRENGDELQPGVNKLVRVYIAQKRKIHEGDKMAGRHGNKGVVSRVMRKEDM 941 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE------------------------ 1020 D P L L + N + L Sbjct: 942 PF-LPDGTPVQIVLN-PLGVPSRMNIGQVLETHLGWAVQGLGMKIKATDLHIQNVLKEAR 999 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 + ++++A R Q + L V + V V + K +KI Sbjct: 1000 TDASYWEQIDAIRDLYAQIEALEAKVSEDVTVNHFEENEQIITLK-----------TKIL 1048 Query: 1081 PIED--MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 + + + L +E D + Sbjct: 1049 KHVEKAAQKKLDAMGGEARFQELKAIEAKYNALHVEFFDSEEEAPEMDPALVEELEAISK 1108 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 K + + +K S D + + + G+ IATPVFDGA E ++ E Sbjct: 1109 VKNTLNNIHSAEEKRVEIRKELESLGYDFDKYGMPKPDVAGIHIATPVFDGAHEKDVFET 1168 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 L + P G+ LYDGRTGE + VTVGY+YMLKL+HLVDDK+HARSTG YSLVTQQP Sbjct: 1169 LAIAGRPDDGKTVLYDGRTGEPMDNRVTVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQP 1228 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV G + EPG Sbjct: 1229 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKAYEKIVKGENIPEPG 1288 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +PESF VLLKE++S+G+++++ +E Sbjct: 1289 VPESFKVLLKELQSIGLDVKILNE 1312 >UniRef50_A1BD23 DNA-directed RNA polymerase subunit beta n=14 Tax=Bacteria RepID=RPOB_CHLPD Length = 1312 Score = 1059 bits (2737), Expect = 0.0, Method: Composition-based stats. Identities = 601/1398 (42%), Positives = 813/1398 (58%), Gaps = 180/1398 (12%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFPIQSYSGNSELQ 69 DF K V+D P LL +QLDSF FI+ GLE RS FPI G L+ Sbjct: 22 DFSKIQSVIDPPDLLKVQLDSFHNFIQDSVPLAKRRDQGLERVLRSAFPITDTRGLYLLE 81 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 Y+SY +P + V++C RG+TY L+VKL+L + E E K+ +QEVY+G IP Sbjct: 82 YISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLSYKD-EPDEADWKETIQQEVYLGRIPY 140 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 MT+ GTF++NG ERV+V+QLHRSPGV F H +GK +Y+A+I+P RGSW++F+ D Sbjct: 141 MTERGTFIVNGAERVVVAQLHRSPGVVFSEAI---HPNGKKMYSAKIVPTRGSWIEFQTD 197 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 + +FV ID+++ T +LRA+ + ++ + F+ + + E+L G+ Sbjct: 198 INNQIFVYIDQKKNFLVTALLRAIGFAKDEDILGLFD-----LVEEVKITSAKKEQLIGQ 252 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 +A D +D TGE+ Sbjct: 253 Y----------------------------------------------LASDIVDMQTGEV 266 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFT----NDLDHGPYISETLRVDPTNDRLSALVE 365 +A ++ D++ ++ +G+K + + + + I T+ D + AL Sbjct: 267 -VSARTAITEDIVDQIIAAGYKSVRVMKSFSGNDKGPDKSIIINTILNDNSATEEEALEI 325 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE---------- 415 +Y +R E P +AA S E FF++ +YDL VGR + + L +E E Sbjct: 326 VYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIRKKLSKEFEELHGYLDGQPE 385 Query: 416 --------------------------GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 +L+ DII V+ LI + NG+ EVDD+DHL Sbjct: 386 LKKLSDTIYEKILHTIQSFSDEPIGGDILVLTHYDIIAVIYYLIKLVNGQAEVDDVDHLA 445 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS 509 NRR+RSVGE QF +GL R+ + V+E+L+ D D + P D+INA+ +S+ V FF +S Sbjct: 446 NRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDSDKIAPSDLINARTVSSVVSSFFATS 505 Query: 510 QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 QLSQFMDQ NPL+E+T+KRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNI Sbjct: 506 QLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNI 565 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 GLI+SLSVYA+ N+ GF++TPYR VT+GVVTD + LSA +E N + + LDE Sbjct: 566 GLISSLSVYAEINDKGFIQTPYRVVTNGVVTDTVLMLSAEDEENKITVPVSIPLDENMKI 625 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 + V R+KG+ L + V+YMDVS Q+VS A+LIPFLEHDD NRALMGANMQRQA Sbjct: 626 AIESVQARTKGDYPLVPAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQRQA 685 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE-------MY 742 VP L A+ P+VGTGME VA DS +A+ G+V V A I ++ + D + Sbjct: 686 VPLLTAEAPIVGTGMESKVARDSRSVILAEGDGIVDDVTAEYIKVRYDIDADTDVRLSLL 745 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 + G+ Y L K+ RSNQ+TCI+Q P + +G+ V +GDVLAD ST+ GELALG+N+ V Sbjct: 746 DPDEGLKTYKLIKFKRSNQDTCISQKPLIHIGQRVSKGDVLADSSSTENGELALGKNVLV 805 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 AFMPW GYNFED+I++SER+V +D FT+IHI E RDTK G E+ T DI NV E AL Sbjct: 806 AFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSEDAL 865 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 LDE+GIV IGAEV DILVGK+TPKGE+ TPEEKLLRAIFG+K+SDVKD+S+ VP Sbjct: 866 RNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHVPA 925 Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILE-----------AGL 971 G+ G VI ++F+R +IE ++ K K+ + L+ G+ Sbjct: 926 GMKGIVIKTKLFSRKKKVGLDIKEKIEILEKKYDYKEYDLRKKFLKRLKQLLEGKTSTGI 985 Query: 972 FSRIRAVLVAGGVEAEK--------LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 +S +LVA + + L +++ E+ + L +++ Sbjct: 986 YSDKGKLLVAEDAVYDDSVLERFTAIPFLESIDFVKGVTQSEKVNENVMLLVKEFRLKLK 1045 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 + + + ++ K+ GD+L PG+ ++ KVY+A KR+IQ GDKMAGRHGNKGV+ KI PIE Sbjct: 1046 DLNDERDNEKYKLNVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVVGKILPIE 1105 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP+ ENG PVDIVLNPLGVPSRMNIGQ+ ET LG A K +G K + ++++ Sbjct: 1106 DMPFMENGKPVDIVLNPLGVPSRMNIGQLYETSLGWAGKELGVKFKTPIFNGATYQEVQQ 1165 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 +++A D G + + Sbjct: 1166 ELEKAGLPSHGKVSLYD----------------------------GRTGEQFDDE----- 1192 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 VT+GY+YMLKL+HLVDDK+HARSTG YSL+TQQPLGGKA Sbjct: 1193 ---------------------VTIGYIYMLKLSHLVDDKIHARSTGPYSLITQQPLGGKA 1231 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESF 1323 QFGGQRFGEMEVWALEAYGAA L+EMLTVKSDDV GR K Y+ IV G + EPG PESF Sbjct: 1232 QFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPEPGTPESF 1291 Query: 1324 NVLLKEIRSLGINIELED 1341 NVL++E++ LG+ I ++D Sbjct: 1292 NVLVRELQGLGLEIRIDD 1309 >UniRef50_Q6MDM1 DNA-directed RNA polymerase subunit beta n=21 Tax=Chlamydiae/Verrucomicrobia group RepID=RPOB_PARUW Length = 1254 Score = 1054 bits (2724), Expect = 0.0, Method: Composition-based stats. Identities = 601/1362 (44%), Positives = 825/1362 (60%), Gaps = 159/1362 (11%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSVFPIQSYSGNSE 67 R+ F + +++D+P L+ IQ+ S+ +F++ D GL+ F +FPI+SY + Sbjct: 8 RESFNDKEEIIDLPNLIEIQIKSYNQFLQADKFPDERENIGLQEVFTEIFPIKSYDEKTI 67 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++SY LG P ++ +EC RG+TY+ L+VK RL IKE+EVYMG I Sbjct: 68 LEFLSYNLGVPKYNPEECIRRGITYNVTLKVKFRLTDETG---------IKEEEVYMGTI 118 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF++NG ERV+VSQLHRSPG+ F+ ++ HS G V+Y+ RIIPYRGSWL+ Sbjct: 119 PVMTDKGTFIVNGAERVVVSQLHRSPGICFEQER---HSRGNVIYSFRIIPYRGSWLEGA 175 Query: 188 FDPKDNLFVRIDRRR---KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 FD D + + IDR++ K+ AT +RAL Y++ + E Sbjct: 176 FDTNDLIHIYIDRKKRRRKILATTFIRALGYSSNS---------------------DIIE 214 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 + GK++A+D +DE Sbjct: 215 EFFTTRKYKIKNEKE-----------------------------FAKLVGKILAQDVVDE 245 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 +G + A+ +L+ +L ++ +G I D D + + L DPT+ SAL Sbjct: 246 ESGLVFGKASEKLTTAMLKRIVDAGIDVIRI--AEDADETSPVIKMLAKDPTDSYESALK 303 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG---ILS 421 + YR +RPGEP T A S LFF RY+L VGR K N L E + L Sbjct: 304 DFYRKIRPGEPATLSNARSAIMRLFFDPKRYNLGRVGRYKLNSKLGCEINDEKLQTVTLD 363 Query: 422 KDDIIDVMKKLIDIRNG--KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 K+D+I +K LI +++G + +DDIDHLGNRR+RSVGE+ +NQ R+GL R+E+ ++ER+ Sbjct: 364 KEDVIGALKYLIMLKSGSEEASIDDIDHLGNRRVRSVGELIQNQCRIGLARMEKIIRERM 423 Query: 480 SLGDL--DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 +L D DTL P +++AK +S +K+FFG SQLSQFMDQ NP++E+THKRR+S+LGPGG Sbjct: 424 NLFDFSSDTLTPGKIVSAKGLSGVLKDFFGRSQLSQFMDQTNPIAELTHKRRLSSLGPGG 483 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 L R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI+SLS +A+ NE+GF+ETPYR V +G Sbjct: 484 LNRDRAGFEVRDVHTSHYGRICPIETPEGPNIGLISSLSSFAKINEFGFIETPYRIVREG 543 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VVTDEI Y++A +E VIAQA++ LDE F E + R KGE V +MDVS Sbjct: 544 VVTDEIEYMTADQEEQCVIAQASAPLDEYHMFAEPICWARYKGEQFETDTKNVTHMDVSP 603 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +Q+VS+ LIPFLEHDDANRALMG+NMQRQ VP L+ P+VGTG+E A DSG + Sbjct: 604 KQLVSIVTGLIPFLEHDDANRALMGSNMQRQGVPLLKPTAPIVGTGLEARAARDSGAVLI 663 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A GVV YVD +IVI +++ + Y L K+ RSN TCINQ P +G+ + Sbjct: 664 AHEDGVVDYVDGLKIVISPDDNRLEKR-----TYLLKKFIRSNAGTCINQRPLCHVGDKI 718 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 + GDV+ADGP+TD GE+ALG+N+ VAFMPW GYN+ED+I++SE++++ED +T+++I+E Sbjct: 719 KAGDVIADGPATDKGEVALGRNVLVAFMPWFGYNYEDAIIISEKLLREDYYTSLYIEEFE 778 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 +RDTKLG EEIT DIPNV E L L++ GI+ IGAEV GD LVGK+TPK ET+L P Sbjct: 779 LTARDTKLGKEEITRDIPNVSEETLRNLNDDGIIRIGAEVKPGDTLVGKITPKSETELAP 838 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG-VEKDKRALEIEEMQLKQA 956 EE+LLRAIFG+KASDVKD+SL P G G V+DV+VF+R + K L E +LK Sbjct: 839 EERLLRAIFGDKASDVKDASLIAPPGTEGVVMDVKVFSRRDRLSKTDDELVEEASKLKDI 898 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVE--------------------AEKLDKLPRDR 996 +++ L R+ A+L+ + ++ L ++ Sbjct: 899 QREYKSNQAQLRTEKHERVGALLLNETAPGNIVHRRTAEIIVDEGDLITQDLIEALEKES 958 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-DLAPGVLKIVKVYLA 1055 +L + + + L Q+ Y+ E + + + + +GD DL PGV++ VKVY+A Sbjct: 959 VEDLLMPENDIYTTLRQILHDYEIALQTVETQYKTQLEFMRKGDTDLDPGVIRQVKVYVA 1018 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 KR++Q GDKMAGRHGNKGV+SKI P DMP+ G ++I+LNPLGVPSRMN+GQ+ ET Sbjct: 1019 SKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLSTGQTIEIILNPLGVPSRMNMGQLFET 1078 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 HLG+AAK G + + + + K+ E +++A D Sbjct: 1079 HLGIAAKHTGITVKSPVFEGFPEEKIWEMMKKAGLPEDGKFFLYDG-------------- 1124 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + FD + V VGY+YMLKL Sbjct: 1125 ------CSGERFDNS----------------------------------VVVGYIYMLKL 1144 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 +HLV DK+HAR+ G YSLVTQQPLGGKAQ GGQRFGEMEVWA EAYGAA+ LQEMLTVKS Sbjct: 1145 SHLVADKIHARAVGPYSLVTQQPLGGKAQMGGQRFGEMEVWAAEAYGAAHLLQEMLTVKS 1204 Query: 1296 DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 DDV GRT++Y++IV G + ++ G PESFNVL+KE++ LG+N+ Sbjct: 1205 DDVAGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLNV 1246 >UniRef50_Q9X6Y1 DNA-directed RNA polymerase subunit beta n=10 Tax=Aquificales RepID=RPOB_AQUPY Length = 1469 Score = 1052 bits (2720), Expect = 0.0, Method: Composition-based stats. Identities = 646/1464 (44%), Positives = 876/1464 (59%), Gaps = 159/1464 (10%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNSE 67 RK FG+R ++L+ PYLLSI +SF+ F++ GLE FR+ FP + N Sbjct: 8 RKFFGRRTEILEPPYLLSIPKNSFENFVQLKVNPYKRKNVGLEHIFRTSFPFKDPDENFI 67 Query: 68 LQYVSYRLG--------------------------------EPVFDVQECQIRGVTYSAP 95 L+Y+ Y +G + F +EC+++G+TYSAP Sbjct: 68 LEYLGYEIGDWECNRCGYKPKDDLLGGWDVDCPECGAKLVYKEKFTPEECKLKGLTYSAP 127 Query: 96 LRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGV 155 LRV L+L + + ++VY GE+PLMTDNG+F+INGTER+I++QL RS GV Sbjct: 128 LRVMLQLKAKTKN----GYRTFPPRKVYFGEVPLMTDNGSFIINGTERIIINQLIRSSGV 183 Query: 156 FF--DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAL 213 FF +K K + ++LY A IIP +GS ++FE +L R+KL A +LRA Sbjct: 184 FFDEKEEKQKDATITRILYRASIIPDKGSRVEFELSGATDLISARIDRKKLSAISVLRAF 243 Query: 214 NYTTEQ-ILDLFFEKVIFEIRDNKLQM------ELVPERLRGETASFDIEANGKVYVEKG 266 T IL F+E V I +K E PE L ++ K Sbjct: 244 GLETAYDILKPFYEGVRKYIVKDKYLYDAETGEEFTPEDLEHHYIFAILKFKAK------ 297 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 I + I + + + DE L + ++ S Sbjct: 298 -------IAGFGTSKEREIIEERYIEEWEELVRILDDERIEVLSVTSVPRENV----IKS 346 Query: 327 QSGHKRIETLFTNDLDHGPYISETLRVDPTND-RLSALVEIYRMMRPGEPPT------RE 379 G ++TL T+ ++V R L+E+Y+ +R E T E Sbjct: 347 PYGKSLVDTLATDTSPRDADRRSPVKVPAEYTLRDYGLMEMYKKLRHIEALTMEIDSIIE 406 Query: 380 AAESLFENLFFSEDRYDLSAVGRMKFNRSLLR---------------------------- 411 A F F RYDLS VGR+K N + Sbjct: 407 RARVYFNVFFRDLKRYDLSRVGRVKINAKVHNIPKVLKPTDIDLLDNLPPLALAEDYGEY 466 Query: 412 -------------------------EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 + + L D+I+++K LID+R+G+ + DDI Sbjct: 467 KAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHGRVKKDDIA 526 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKE 504 HLGNRR+RSVGE+ ENQ R+G+ ++E+ ++R + + L PQD IN + ++ A+ + Sbjct: 527 HLGNRRVRSVGELLENQARLGIAKMEKVFRDRSATIHPEQPDLKPQDFINPRYVTNAIAD 586 Query: 505 FFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETP 564 F + QLSQ++D NPLSE+THKRR+SALGPGGLTRE A FE+RDVHP+HYGR+CPIETP Sbjct: 587 FLKTGQLSQYLDNTNPLSELTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIETP 646 Query: 565 EGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD 624 EG NIGL+ S +VYA+ NEYGFL TPYRKV +G VTD+I +L+A EE NYVIAQ ++ D Sbjct: 647 EGQNIGLVTSPTVYARVNEYGFLITPYRKVENGRVTDKIEWLAAYEEENYVIAQ-STPTD 705 Query: 625 EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 EEG + V R K + L +QVDY+DVS +QV+S +SLIPFLEHDDANRALMG+N Sbjct: 706 EEGRIKAEFVLARHKNDIRLVKPEQVDYIDVSPRQVISPSSSLIPFLEHDDANRALMGSN 765 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM--- 741 MQRQAVP + PLVGTGME+ +A DS VAKRGGVV+ VD S+I+++VN +E+ Sbjct: 766 MQRQAVPLIFTQAPLVGTGMEKKIARDSHAVVVAKRGGVVEEVDGSKIIVRVNPEEINLE 825 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 P + GIDIY L K+ R+NQ TC+NQ P V GE VE+G ++ADG STD GELALG+++ Sbjct: 826 DPLDIGIDIYELRKFERTNQKTCVNQRPIVKKGERVEKGQIIADGHSTDRGELALGKDVL 885 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 VAFMPW GYNFED+I++SER+V+ED +T+IHI+EL +R+TK+G EEIT IP V E A Sbjct: 886 VAFMPWRGYNFEDAIVISERLVKEDVYTSIHIEELEVEARETKVGDEEITRQIPGVPERA 945 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L+ LDE GIV +G V GDILVGKVTPKGET+LTPEEKLL+AIFGEK DVKD+SLR P Sbjct: 946 LAHLDEHGIVRVGTYVKPGDILVGKVTPKGETRLTPEEKLLQAIFGEKTKDVKDASLRCP 1005 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI--LEAGLFSRIRAVL 979 GV G VIDVQVFTR G + K L + + + + E + L +G+ ++ ++ Sbjct: 1006 PGVEGIVIDVQVFTRKGGKAAKDMLAQKVEREELEALERELEKKKNLLMSGVEKVLKGLI 1065 Query: 980 VAGGVEAEKLDKLPRDRW-------------------LELGLTDEEKQNQLEQLAEQYDE 1020 + + + + E TDEE ++ ++ + Sbjct: 1066 LGKKTDKDVKIGKKEIKKGTEITEEIFKEYSQYILARPENFFTDEELIKKIREIYTRSRT 1125 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 +K + K+ + + DL PGV+ +VKV++A KR+I+ GDKMAGRHGNKGVIS + Sbjct: 1126 QIDMLQKVYQEKKETLLKRRDLPPGVITLVKVFIANKRKIKVGDKMAGRHGNKGVISVVL 1185 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 P+EDMP+ +GTPVDIVLNPLGVPSRMN+GQILETHLG AAK +G KI M+++ ++ Sbjct: 1186 PVEDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKELGKKIGEMIEKGRDRKA 1245 Query: 1141 LREFIQRAYDLGADVRQK-----VDLSTFSDEEVMRLAEN-LRKGMPIATPVFDGAKEAE 1194 + E+++ Y +G + + L++ S+EE + + ++G+P+ATP F+GA E Sbjct: 1246 ITEYLKEIYAVGDENGENAKFIEEFLNSLSEEEFWSVVRDYAQRGIPMATPAFEGADEKA 1305 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 +KELLK LP SG+ LYDGRTGE F+ VTVGYM+MLKL H+VDDK+HAR+TG YSLV Sbjct: 1306 VKELLKKAGLPESGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDKIHARATGPYSLV 1365 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQ 1314 TQQPLGG+AQFGGQR GEMEVWALEA+GAAYTLQEMLTVKSDDV GR+K+Y+ IV G + Sbjct: 1366 TQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSDDVEGRSKVYEAIVKGKYT 1425 Query: 1315 MEPGMPESFNVLLKEIRSLGINIE 1338 PG+PESF VL++E++ L +N++ Sbjct: 1426 YTPGIPESFKVLVRELKGLSLNVK 1449 >UniRef50_B0VGC1 DNA-directed RNA polymerase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC1_9BACT Length = 1258 Score = 1029 bits (2661), Expect = 0.0, Method: Composition-based stats. Identities = 564/1371 (41%), Positives = 800/1371 (58%), Gaps = 153/1371 (11%) Query: 9 KRIRKDFGKRPQVL--------DVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSV 56 R K + + ++P LL++Q+DSF F+++D Q GL+A F ++ Sbjct: 1 MRKVKSYSRISGRFAELGIPEVEIPNLLAMQVDSFNDFLQKDIHPQRREKKGLQAVFENI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FP++ GN L+++ Y + + + ++EC+ R ++Y APL+ K+RL ++E KD Sbjct: 61 FPLEDTKGNFLLEFIEYNVLQEKYSLEECRERNLSYQAPLKAKMRLSVFENREGVREHKD 120 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 EQEV++GEIPL+T+ GTFVING ERVI+SQL RSPGVFF + H SGK LY+A++ Sbjct: 121 TLEQEVFLGEIPLITEQGTFVINGAERVIISQLQRSPGVFFSEE---KHPSGKTLYSAKV 177 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEKVIFEIR-- 233 IPY GSWLDF+ D D +FV ID+RRKLP T + RA+ + E + F++ ++ Sbjct: 178 IPYSGSWLDFDIDIHDVMFVHIDKRRKLPVTTLFRAIGISTNEDLRKTFYKSEKLNLKEA 237 Query: 234 DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 + + E + N + +IT I+ L + Sbjct: 238 KGRHLFADIYE-----------KGNPEPIAMANEQITDSLIKFLSERK------------ 274 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 ++E + N + T+ Sbjct: 275 ------------------------------------ITKVEVIDYNYEIARKVLENTMAK 298 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 DPT ++ AL +IY ++RPGE EAA+ L + +FF+E RY+L VGR K N L Sbjct: 299 DPTTNQEEALKKIYNLIRPGEDAPLEAAKQLVDRMFFNEKRYNLGEVGRYKINSRLGINV 358 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 L+ +D + + K LI+I + + EVDDID+L NRR+R+VGE+ + Q+ +G+ V R Sbjct: 359 DPKIMTLTVEDFVYIFKTLINIYHDEDEVDDIDNLANRRVRTVGELLQEQYTIGMAMVAR 418 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 ++ER+++ ++D + D++N+ + + V+ FF + QLSQFM+Q NPL+ + HKR +SAL Sbjct: 419 IIQERMAISNIDEVTVHDLVNSNALISVVQSFFLTGQLSQFMEQTNPLAALRHKRALSAL 478 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGL RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI S ++Y++ N +GFLETPYRK Sbjct: 479 GPGGLARERAGFEVRDVHSSHYGRICPIETPEGPNIGLIVSPAIYSRINHFGFLETPYRK 538 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V DG +TDE YL A +E Y+IAQ++ +LD+ ++++ R +GE S + V YM Sbjct: 539 VVDGCITDEYEYLDASQEEKYIIAQSDVHLDDNRRITDEMIFARDRGEFVQVSPNLVHYM 598 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DV+ QQ+VSV A+LIPFLEHDDANRALMG+NMQRQAVP + PLVGTGME+ ++D+ Sbjct: 599 DVAPQQMVSVSAALIPFLEHDDANRALMGSNMQRQAVPLINPQAPLVGTGMEKIASMDTS 658 Query: 714 VTAVAKRGGVVQYVDASRIVIKV-NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 AVA G+V V ++ I +K NE + + + +L K+ R+NQ+TCINQ P V Sbjct: 659 SIAVAPYDGIVTKVTSAFIDLKPLNEKDEAYYLSTGNRIHLKKFVRTNQDTCINQRPIVR 718 Query: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 +G+ V++G ++DG + LALG N+ VAFMPW GYN+ED++++SE+V +ED T+I+ Sbjct: 719 VGDTVKKGQPISDGACVEDNRLALGTNLMVAFMPWYGYNYEDAVILSEKVAREDTLTSIY 778 Query: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG- 891 I+EL + R+ K G EE+ DIPNV AL LD++GI+ +G+ + GDI+VGKVTPK Sbjct: 779 IEELEVLVRNVKNGREELAYDIPNVPAQALRNLDKTGIIRVGSVIHAGDIIVGKVTPKSV 838 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG------------- 938 E +PEE L+RA+FG++A D +SSL+ G+ G VIDV+VF+R Sbjct: 839 EIDPSPEENLMRALFGDRAGDFTNSSLKAKPGMEGVVIDVKVFSRLEEGSDLEEENEDKI 898 Query: 939 ----VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 E R +IEE + ++ L ++ + I + + + L ++ Sbjct: 899 EKLKEELALRRSKIEEFKEEKLSAVLVGQIAKNIWDEKTNIPFIAPGKKITKQDLKRINF 958 Query: 995 DRW---LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 + +EL E Q+ + + + + + R +I GD+L GV K+VK Sbjct: 959 KKLDLDVELVEDREVNDYIYSQIVLKIKQSLEQSDNIYKKSRERIKHGDELQYGVRKMVK 1018 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 VY+A KR+I+ GDKMAGRHGNKGVIS I PIEDMP+ E+GTPVDIVLNPLGVPSRMNIGQ Sbjct: 1019 VYVAKKRKIEVGDKMAGRHGNKGVISIIAPIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQ 1078 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 I+ETHLG AAK +G ++ + + +++A D Sbjct: 1079 IMETHLGWAAKTLGFEVETPIFDGASNEDIVSELRKAGLPEDGKTVLYDGK--------- 1129 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + F VTVG +Y Sbjct: 1130 -----------SGEPFKE----------------------------------RVTVGIIY 1144 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 M+KLNHLV DKMHARSTG YSL+TQQPLGGKAQ GGQR GEMEVWALEAYGAA L+EML Sbjct: 1145 MMKLNHLVADKMHARSTGPYSLITQQPLGGKAQHGGQRLGEMEVWALEAYGAASVLEEML 1204 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 T+KSDDV+GR +K I G++ PG+PESFNVL+ E++SLG +IE E Sbjct: 1205 TIKSDDVDGRNNAFKAITRGDNPPPPGVPESFNVLISELKSLGFDIEFIKE 1255 >UniRef50_Q7URW6 DNA-directed RNA polymerase subunit beta n=7 Tax=Planctomycetales RepID=RPOB_RHOBA Length = 1240 Score = 1010 bits (2612), Expect = 0.0, Method: Composition-based stats. Identities = 564/1366 (41%), Positives = 783/1366 (57%), Gaps = 156/1366 (11%) Query: 1 MVYSYT---EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAF 53 M + E IRK FG D+P L ++Q S+ F+++D GLE+ Sbjct: 1 MATTTQRRLEPTSIRK-FGTGLGQFDLPDLTALQTVSYAAFLQEDAASNARKDHGLESVL 59 Query: 54 RSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 R +FPI SY GN+ L+Y+ Y LG+P + +QEC+ +TY PLR+ LRL Sbjct: 60 REIFPIASYDGNTTLEYLYYELGKPRYTIQECRQLRLTYGRPLRIWLRL----------N 109 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 ++ E+EVY+G++P+M G F+ING ERV+VSQLHRSPGV F + ++ + L + Sbjct: 110 REEPIEEEVYLGDLPIMLGGGEFIINGAERVVVSQLHRSPGVDFV--LEQDTTTDRKLPS 167 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN---YTTEQILDLFFEKVIF 230 R+IP RGSW++ KD L VRID+ K AT++LRA++ T +L F+E Sbjct: 168 CRVIPERGSWIEVNVTKKDALTVRIDQSGKFAATMLLRAMDPKYSTDADLLSAFYETGTI 227 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 ++ K Sbjct: 228 KVNGG-----------------------------------------------KDATKIEN 240 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 IA V E GE+I A +++ +L + +G +E + DL P I T Sbjct: 241 KIAVDDVVYPSGHERAGEIIVEAGYKITTELSETICNAGVTSVEAM---DLPKVPLIFNT 297 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 L D T AL+ IY+ +RPG PP E A +LF+ F+ ++RY L VGR + NR L Sbjct: 298 LADDNTASHEEALLRIYQRLRPGNPPQLEKARTLFQEKFYDDNRYRLGKVGRFRLNRKLG 357 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKG--EVDDIDHLGNRRIRSVGEMAENQFRVGL 468 E L DD+I ++ LID+ + E+DDIDHLGNRR+R++ E+A + R G Sbjct: 358 LGVEETVMTLRPDDMIAAIRYLIDLFDADSGAEIDDIDHLGNRRLRTIDELASEELRKGF 417 Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 +++ R V+ER+S+ D + P+ +IN K +SAA+ FFG +LSQ +DQ NPLS++ H+R Sbjct: 418 LKLRRTVQERMSVKDAQDMTPRSLINPKSVSAAIDFFFGRGELSQVVDQTNPLSQLAHER 477 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+SALGPGGL R+RAGFEVRDVH +HYGR+CPIETPEG NIGLI+SL++YA ++YGFL Sbjct: 478 RLSALGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYAGVDDYGFLC 537 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 TP+RKV DG ++DE +L A EEG +A A++ + + + R + + + + Sbjct: 538 TPFRKVIDGKISDETVWLRADEEGESYVAPADTEVKDGALVPGPNMIARFRSDFEIVMPE 597 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 QV +MDV+ Q+V V A LIPFLEHDDANRALMG+NMQRQAVP L + P+VGTGMER V Sbjct: 598 QVSFMDVAPAQMVGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVTEPPIVGTGMEREV 657 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 A +S + A+R G V Y DA+RI E G D Y L KY N+ TC NQ Sbjct: 658 AKNSAMVVRARRAGKVTYADATRI------------EIGSDHYPLKKYQGLNERTCQNQK 705 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 P +++G+ VE+G ++ADG +T GELALG+N+ V FM ++G+N+ED+I++SE +V+ D + Sbjct: 706 PLITVGDKVEKGQIIADGAATQKGELALGRNVLVGFMSFDGFNYEDAIIISEELVRNDTY 765 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 T+IHI++ R+TKLG EE T DIPNV E AL LD++GIV G V GDILVGKV+ Sbjct: 766 TSIHIEDFDVEIRETKLGREEFTRDIPNVSEKALRNLDDTGIVQTGTYVKPGDILVGKVS 825 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD---GVEKDKRA 945 PK +T+LTPEEKLL AIFG DVK+ SL VP+G+ G VID Q F+R G ++ K Sbjct: 826 PKSKTELTPEEKLLHAIFGRAGEDVKNDSLEVPSGIEGIVIDTQKFSRRMSLGEDERKAF 885 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR----------- 994 + + ++++ + L + L + P+ Sbjct: 886 ERELKQHETEGNEEIASTFESLIRDMEEASGVKLKDSTGTPLADGQDPKFVAERATSFRL 945 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + LE +E+++ + Q+ ++ +++ + K + +GD+L GVL++VK+Y+ Sbjct: 946 ELVLEQIEDEEKRKAAEKVHQTQWQNVEQAIDER-DRKLNSMKRGDELRSGVLQMVKIYI 1004 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR I GDKMAGRHGNKGVI+KI PIEDMP+ +GTP+ I+LNPLGVPSRMN+GQILE Sbjct: 1005 ATKRTISVGDKMAGRHGNKGVIAKILPIEDMPFLPDGTPIQIMLNPLGVPSRMNVGQILE 1064 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 THLG A +G + + +++ + + A + D T E Sbjct: 1065 THLGWAGAKLGFQALTPIFDGASESEINDCLAEAGLPAHGKIRLTDGRTGEPMEQETTV- 1123 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 MLK Sbjct: 1124 ----------------------------GYIY-------------------------MLK 1130 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L+HLVDDK+HARSTG YSL+TQQPLGGKA+FGGQRFGEMEVWALEAYGAAY LQE+LTVK Sbjct: 1131 LHHLVDDKVHARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVK 1190 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SDDV GRTK+Y+++V G + +E G P SF+VL EIR L +N++LE Sbjct: 1191 SDDVEGRTKIYESMVKGENTLEAGTPASFDVLTNEIRGLALNMQLE 1236 >UniRef50_A1ALT4 DNA-directed RNA polymerase subunit beta n=208 Tax=cellular organisms RepID=RPOB_PELPD Length = 1499 Score = 996 bits (2575), Expect = 0.0, Method: Composition-based stats. Identities = 595/1160 (51%), Positives = 792/1160 (68%), Gaps = 39/1160 (3%) Query: 211 RALNYTTEQILDLFFEKVIFEIR--DNKLQMELVPERLRGETAS--FDIEANGKVYVEKG 266 R L I F + ++ + +++ +E+ G+ + + ++ Sbjct: 342 RLLFIDNLHITSSFRDTLLMDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNPE 401 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYI---AGKVVAKDY-IDESTGELICAANMELSLDLL 322 R + R + L P + A+D + L+ AA+ S +L Sbjct: 402 RYDLSAVGRLKLNFKLGLKVWPECTVLNAPCMFGAEDIASFDELFRLLLAADNRFSQYVL 461 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA- 381 A+L + ++ + E L + N + + G +++ Sbjct: 462 ARLPE-DFVKVLRKHEPSQPVAEKLREQLLKELNNLVKDPDFY-QKELFTGLALSQQTVA 519 Query: 382 -ESLFENLFFSEDRYDLSAVGRMK-FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 E F E+R + + R + L + S +DI+++++ LID++NG+ Sbjct: 520 LTEAIEGGVFEENRRVIEVLRRNRMIFEDLYAPVVLTSPK---NDILEIVRYLIDLKNGR 576 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPIS 499 G +DDIDHLGNRR+R+VGE+ ENQ+R+GLVR+ERA+KER+SL +++ LMP D+IN+KP+S Sbjct: 577 GAIDDIDHLGNRRVRAVGELLENQYRIGLVRMERAIKERMSLQEVENLMPHDLINSKPVS 636 Query: 500 AAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 A VKEFFGSSQLSQFMDQ NPLSE+THKRR+SALGPGGLTRERAGFEVRDVHPTHYGRVC Sbjct: 637 AVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRVC 696 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQA 619 PIETPEGPNIGLI SLS YA+ N++GF+ETPYR V DG +T+E+ + SA+EE + IAQA Sbjct: 697 PIETPEGPNIGLIASLSTYARINDHGFVETPYRIVLDGKLTNEVRFFSALEEEGHAIAQA 756 Query: 620 NSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA 679 N+ +D EG FV D V+ R GE L RD+++ MDV+ +Q+VSV A+LIPFLE+DDANRA Sbjct: 757 NAEVDAEGRFVNDYVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLENDDANRA 816 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 LMG+NMQRQAVP LRAD PLVGTGMER VA DSGV+ +A+ GVV+ VDASRIV+K++E Sbjct: 817 LMGSNMQRQAVPLLRADSPLVGTGMERIVAKDSGVSVIARHNGVVESVDASRIVVKIDES 876 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 E+ G+DIYNL K+ RSNQNTCIN P V +G+ V+R DV+ADGPSTD+GELALGQN Sbjct: 877 EVDETGTGVDIYNLIKFARSNQNTCINNKPVVKVGDVVKRHDVIADGPSTDMGELALGQN 936 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + VAFMPW GYNFEDSILVSE++V++DR+T+IHI+E CV+RDTKLG EEIT+DIPN+GE Sbjct: 937 IVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEYECVARDTKLGKEEITSDIPNLGE 996 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 AL LDESGI+ IGAEV GDILVGK+TPKGETQL+PEEKLLRAIFGEKA DV+D+SL Sbjct: 997 EALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVRDTSLT 1056 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 VP GV GTVI +VF+R G +KD R IE+ + ++ +KD +E++I+ ++ +L Sbjct: 1057 VPPGVEGTVIGAKVFSRKGADKDTRTELIEKAEEEKLRKDEQDEIRIIRQSAEGKLHRLL 1116 Query: 980 VAGGVEAEKLDKLPRDRWLE--------------------LGLTDEEKQNQLEQLAEQYD 1019 + + + D + D + + + ++ + + Sbjct: 1117 IGKSLSVKLEDGEGNLILAKGKEITAEALKSLSINDMGAISVSDDGQTDDNVSKVIDTLN 1176 Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 + E K +K+ +GDDL PGV+K+VKVY+A+KR++Q GDKMAGRHGNKGV+S+I Sbjct: 1177 RQIELIQSVFEDKIQKLRRGDDLPPGVIKMVKVYIAIKRKLQVGDKMAGRHGNKGVVSRI 1236 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 P EDMPY E+G PV+IVLNPLGVPSRMN+GQILETHLG AAKGIG +I ML++Q Sbjct: 1237 LPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAAKGIGWRIEEMLQKQTSAE 1296 Query: 1140 KLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL 1199 L+ +++ Y D + EE+M + L++G+ +A+PVF+GA E +IK +L Sbjct: 1297 SLKAYLKDVY---GDDEVGTFIDGMDQEELMLVCRRLQRGVSMASPVFEGASEDKIKSML 1353 Query: 1200 KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1259 +SGQ+ L+DGR+G+ F+ VTVG MY+LKL+HLVDDK+HARS G YSLVTQQPL Sbjct: 1354 GKAGFHSSGQVTLFDGRSGDPFKHKVTVGVMYVLKLHHLVDDKIHARSIGPYSLVTQQPL 1413 Query: 1260 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 GGKAQFGGQR GEMEVWA+EAYGAAY LQE LTVKSDDV+GRT+MY+ IV G H +EPG+ Sbjct: 1414 GGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDVSGRTRMYEAIVKGKHTLEPGL 1473 Query: 1320 PESFNVLLKEIRSLGINIEL 1339 PESFNVL+KE++SL +++EL Sbjct: 1474 PESFNVLIKELQSLCLDVEL 1493 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 285/1145 (24%), Positives = 493/1145 (43%), Gaps = 117/1145 (10%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56 M YS +RK F K ++D+P L+ IQ +S+++F++Q+ GLEA FRSV Sbjct: 1 MAYSIANNHLLRKTFTKIKNIIDIPNLIDIQKNSYRRFLQQEGVSESRNNTGLEAVFRSV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYE--REAPEGTV 114 FPI+ +S ++ L+YVSY L +P +DV EC RG+T++AP++VK+RLVI++ +E+ + Sbjct: 61 FPIKDFSESASLEYVSYSLSKPKYDVVECHQRGMTFAAPMKVKVRLVIWDTGKESGIRAI 120 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 KDIKEQEVY GEIPLMTDNGTF+INGTERVIVSQLHRSPGVF+D DKGKTHSSGKVLY+A Sbjct: 121 KDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA 180 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 R+IPYRGSWLDFEFD KD L+VRIDRRRK+PAT++L+AL Y+ EQ+L+ +++ + Sbjct: 181 RVIPYRGSWLDFEFDHKDILYVRIDRRRKMPATVLLKALGYSAEQLLNYYYKSEEIFLTG 240 Query: 235 NKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + E L + A D+ +G+V V+ R+ T IR++ + D+K + + + I Sbjct: 241 ETPSKSIDAELLTLQKALVDVVDPKSGEVIVKANRKFTKASIRKMVEHDIKAVPITFDSI 300 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 G+ + D ID +TGE++ N E++ + ++ G + LF ++L +TL Sbjct: 301 IGRYASSDVIDPATGEVLLECNEEVTAEKFDEIKAKGVESFRLLFIDNLHITSSFRDTLL 360 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 +D + AL+EIYR +RPG+PPT +++ +LFENLFF+ +RYDLSAVGR+K N L + Sbjct: 361 MDKISTNDEALIEIYRRLRPGDPPTLKSSLALFENLFFNPERYDLSAVGRLKLNFKLGLK 420 Query: 413 EIEGSGILSKDDI-----IDVMKKLIDIRNGKGEVDDI-----------DHLGNRRIRSV 456 +L+ + I +L + D+ D + R Sbjct: 421 VWPECTVLNAPCMFGAEDIASFDELFRLLL---AADNRFSQYVLARLPEDFVKVLRKHEP 477 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSS------Q 510 + + R ++ + + + D + + A+ E + Sbjct: 478 SQPVAEKLRE---QLLKELNNLVKDPDFYQKELFTGLALSQQTVALTEAIEGGVFEENRR 534 Query: 511 LSQFMDQNNPLSE---------------ITHKRRISAL--GPGGLT-----RERAGFEVR 548 + + + +N + E + R + L G G + R V Sbjct: 535 VIEVLRRNRMIFEDLYAPVVLTSPKNDILEIVRYLIDLKNGRGAIDDIDHLGNRRVRAVG 594 Query: 549 DVHPTHY--GRVCPIE-TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 ++ Y G V E ++ + +L + N ++ + Sbjct: 595 ELLENQYRIGLVRMERAIKERMSLQEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQ 654 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 + + E + + G + + +V ++ + + A Sbjct: 655 TNPLSEVTHKRRLSA---LGPGGLTRE-RAGFEVRDVHPTHYGRVCPIETPEGPNIGLIA 710 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG--V 723 SL + +D R + ++ + +E + A G V Sbjct: 711 SLSTYARINDHG---FVETPYRIVLDGKLTNEVRFFSALEEEGHAIAQANAEVDAEGRFV 767 Query: 724 VQYVDASR----IVIKVNEDEM----YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 YV A + I++ +E E+ + + + N + Sbjct: 768 NDYVSARKSGEFILVHRDEIELMDVAPKQLVSVAAALIPFLENDDANRALMGSNMQRQAV 827 Query: 776 PVERGDVLADGPSTDLG-ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 P+ + AD P G E + ++ V+ + +N VV+ + I ++ Sbjct: 828 PL----LRADSPLVGTGMERIVAKDSGVSVI--ARHN---------GVVESVDASRIVVK 872 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 +T G +I I + ++ +V +G V D+ + + Sbjct: 873 IDESEVDETGTG-VDIYNLIKFARSNQNTCINNKPVVKVGDVVKRHDV-IADGPSTDMGE 930 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 L + ++ A + +DS L VS ++ +T +E+ + ++ + Sbjct: 931 LALGQNIVVAFMPWGGYNFEDSIL-----VSEKLVKDDRYTSIHIEEYECVARDTKLGKE 985 Query: 955 QAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 + D+ +E I+ G + +LV + P ++ L + Sbjct: 986 EITSDIPNLGEEALKDLDESGIIRIGAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGE 1045 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY------LAVKR 1058 + + L K+ +++ + K+ + + R Sbjct: 1046 KAGDVRDTSLTVPPGVEGTVIGAKVFSRKGADKDTRTELIEKAEEEKLRKDEQDEIRIIR 1105 Query: 1059 RIQPG 1063 + G Sbjct: 1106 QSAEG 1110 >UniRef50_C1A6N7 DNA-directed RNA polymerase n=5 Tax=Bacteria RepID=C1A6N7_GEMAT Length = 1522 Score = 985 bits (2545), Expect = 0.0, Method: Composition-based stats. Identities = 560/1272 (44%), Positives = 772/1272 (60%), Gaps = 86/1272 (6%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSVFPIQSYSGNSELQ 69 F K +D+P+LL IQ +F+ ++ D GLE F+ +FPI N L+ Sbjct: 5 SFAKLETGMDMPHLLDIQTRAFESLLQLDAASQEREDVGLERVFKDLFPITDVHENFSLE 64 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 +V Y LGEP + V EC R +TYSAPL+ L+LVI+E ++I E+EVY+GE+PL Sbjct: 65 FVRYSLGEPKYTVAECIERDMTYSAPLKATLQLVIFEDTGDGKRPRNIIEKEVYLGELPL 124 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 +T+ GTFVING ERVIVSQLHRSPGV F+ TH +G+ L ++RIIP+RGSW++F D Sbjct: 125 LTELGTFVINGAERVIVSQLHRSPGVVFEES---THPNGQRLLSSRIIPFRGSWVEFTVD 181 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 D ++V ID+++K PAT +LRA Y + + F K + + G Sbjct: 182 IHDVIYVHIDKKKKFPATALLRAFGYGENRDILRLFFAERDLDLTKKRETRNDQREVLGA 241 Query: 250 TASFDIEANGKV------------------------YVEKGRRITARHIRQLEKDDVKLI 285 + DI G+V V +G +T + +L + +K + Sbjct: 242 IIAEDITLEGEVTAADAPKPKTKKAKAERERSEAELLVREGDELTEEVLNRLVRQGIKTV 301 Query: 286 EVPVEYIA-----------------GKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 ++ Y +++A+D ID+ TGE++ + L+ ++ ++ ++ Sbjct: 302 KMFASYTQIDLRDEQDAIDRGEREVRRMLARDVIDQDTGEVVAEKDTTLTDAVIKRIRKA 361 Query: 329 GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENL 388 ++ + I TL DPT AL +IY ++RPG+ P RE A+ E L Sbjct: 362 DIVKVFVFVASGRAESTLIKNTLAKDPTKAEEEALKQIYALLRPGDAPNRETAKQALERL 421 Query: 389 FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 FFS RYDL VGR K N+ L + +L+K+D +++M++L+++ G+G+VDDID L Sbjct: 422 FFSPKRYDLGRVGRYKINQRLRLNTPMRTTVLTKEDFVEIMRQLVELHEGRGDVDDIDQL 481 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-DLDTLMPQDMINAKPISAAVKEFFG 507 GNRRIRSVGE+ NQF VGL R+ R VKER+S+ D + + D++NA+ +SA ++ FFG Sbjct: 482 GNRRIRSVGELIANQFSVGLSRMARLVKERMSINTDPEKISLDDLVNARTVSAVIQAFFG 541 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 SSQLSQFMDQ NPL+E+THKRR+SALGPGGLTRERAGFEVRDVH + YGR+CPIETPEGP Sbjct: 542 SSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSQYGRMCPIETPEGP 601 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG 627 NIGLI SL+ +AQ N+ GF+ETPYR V +G VT EI +L A E + +IAQANS L+ +G Sbjct: 602 NIGLITSLACFAQVNDLGFIETPYRIVKEGRVTGEIVWLDANREEDAIIAQANSKLNPDG 661 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 FV+DLV R +G+ L +DYMDV+ +Q+VS+ A+LIPFLEHDDANRALMG+NMQR Sbjct: 662 TFVDDLVLSRKRGDLPLEPPMNIDYMDVAPEQLVSIAAALIPFLEHDDANRALMGSNMQR 721 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI-------KVNEDE 740 QAVP L P VGTG+E VAVDSG +A+R GVV V A I+I V++ Sbjct: 722 QAVPLLNPATPFVGTGLEATVAVDSGAVIIARRPGVVTNVTADEIIIDAGLNQEAVDDGR 781 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 +D Y L KY R+NQ+T INQ P V +G+ V +G+VLADG +T++G+LALG+N+ Sbjct: 782 PLTRLGQLDRYRLKKYWRTNQDTAINQRPLVRMGQTVAKGEVLADGAATEMGQLALGRNV 841 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 VAFMPW G+NFED+I++SER+V+ D F++IHIQEL RDTK G EEIT +IPNV E Sbjct: 842 TVAFMPWYGHNFEDAIVLSERLVKFDVFSSIHIQELELHVRDTKRGQEEITREIPNVAEE 901 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 +L LDE GIV IGA V GDILVGK+TPKGET+L+PEEKLL AIFGEKA DVKDSSL+V Sbjct: 902 SLVDLDERGIVRIGAAVKAGDILVGKITPKGETELSPEEKLLTAIFGEKAKDVKDSSLKV 961 Query: 921 PNGVSGTVIDVQVFTRDGV---EKDKRALEIEEMQLKQAKKDLSEELQ------------ 965 G+ G VIDV++F+R EKD+ E +L+ +K E++ Sbjct: 962 SPGMEGVVIDVKIFSRVEDQVVEKDRGERIGEVRRLEGEEKIRVNEVRDAELSRLLEGET 1021 Query: 966 -ILEAGLFSRIRAVLVAGGVEAEKLDKLPRD--RWLELGLTDEEKQNQLEQLAEQYDELK 1022 L + A+ + E LD L + +++ +++ + + E K Sbjct: 1022 VALALKAGTVEEAIGAGTTLTREILDGLRFATLDLKTFRVENKKANDRVRDILDAAAEEK 1081 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 E++ E + +I Q D+L PGV+++VKVYLA KR+I GDKMAGRHGNKG++++I P Sbjct: 1082 ARIEERAEDRIDRILQPDELPPGVIQLVKVYLAEKRKISVGDKMAGRHGNKGIVARIVPE 1141 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMP+ NG PVDIVLNPLGVPSRMN+GQILETHLG AAK + + + ++ Sbjct: 1142 EDMPFLPNGRPVDIVLNPLGVPSRMNVGQILETHLGWAAKLLNFYAKTPVFEGANEREIG 1201 Query: 1143 EFIQRAYDLGADVRQKV--DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 ++ A A + S + EV L +++ + V ELL Sbjct: 1202 LLMKLAGLRWARETLMLGGPASDTTTAEVKALLSDIKPDRRLPDKV----------ELLG 1251 Query: 1201 LGDLPTSGQIRL 1212 +L G + Sbjct: 1252 DANLNDLGGKAM 1263 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 141/438 (32%), Positives = 214/438 (48%), Gaps = 13/438 (2%) Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQIL 967 ++ D+ D++ + D E +++ ++ L + +K + Sbjct: 1068 DRVRDILDAAAEEKARIEERAEDRIDRILQPDELPPGVIQLVKVYLAEKRKISVGDKMAG 1127 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 G + ++ + + P D L L + N + L Sbjct: 1128 RHGNKGIVARIVPEEDMPF-LPNGRPVDIVLN-PLGVPSRMNVGQILETHLGWAAKLLNF 1185 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN--KGVISKINPIEDM 1085 + + ++ ++K+ + A + + G + K ++S I P + Sbjct: 1186 YAKTPVFEGANEREIGL-LMKLAGLRWARE-TLMLGGPASDTTTAEVKALLSDIKPDRRL 1243 Query: 1086 PYDENGTPVDIVLNPLG----VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 P D+ D LN LG P + + +A+ I D+ ++ + + Sbjct: 1244 P-DKVELLGDANLNDLGGKAMSPETKALFTRVREFATQSARAIADRELDAVRAAISIHRG 1302 Query: 1142 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 A + + S E + R+ + M + D +A EL++L Sbjct: 1303 EASEVPEGAPAALEVLEGFAALSSTETLQRIGQPALAAMLVGGK--DADVDAAASELIRL 1360 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 L +G++RL DGRTGE F PVTVG +YMLKL+HLVDDK+HARS G YSLVTQQPL G Sbjct: 1361 AGLTPTGKVRLRDGRTGETFTAPVTVGEIYMLKLSHLVDDKIHARSIGPYSLVTQQPLAG 1420 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE 1321 KAQFGGQRFGEMEVWALEAYGAA+TLQE+LTVKSDDVNGR+++Y+ IV G + EPG+PE Sbjct: 1421 KAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVNGRSRVYEAIVKGQNLPEPGIPE 1480 Query: 1322 SFNVLLKEIRSLGINIEL 1339 SFNVL+KE+++LGI + L Sbjct: 1481 SFNVLVKELQALGIKVTL 1498 >UniRef50_B0SSI4 DNA-directed RNA polymerase subunit beta n=53 Tax=Leptospira RepID=RPOB_LEPBP Length = 1228 Score = 951 bits (2459), Expect = 0.0, Method: Composition-based stats. Identities = 520/1355 (38%), Positives = 738/1355 (54%), Gaps = 187/1355 (13%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG-----QYGLEAAFRSVFPIQSYSG 64 R R +FGK + +P L+ +Q SF F++ + + GLEA FR FPI+S + Sbjct: 8 RNRVNFGKITDLNLLPNLIYVQKKSFDWFLQSEVKDPTKRLNQGLEAVFRESFPIESPNN 67 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 + ++Y Y LGEP D QEC+ +++ PL+ +RL+I + +I+EQ VYM Sbjct: 68 DMVMEYGHYVLGEPKRDPQECKDTDSSFAVPLKAVIRLIIKD-------TGEIREQVVYM 120 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 G++P+MTD+GTF+ING ERV+VSQLHRSPG+FF D+ + ++AR+IPYRGSWL Sbjct: 121 GDLPVMTDHGTFIINGAERVVVSQLHRSPGIFFSYDQVRD------TFSARVIPYRGSWL 174 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVP 243 +FE D K L +IDR++K PAT++++A+ T E++L LF+ +I P Sbjct: 175 EFEMDNKGILVAKIDRKKKFPATLLVKAMGMGTNEEVLRLFYGSSKMKIAG------ANP 228 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + L + + G+ D I+ Sbjct: 229 KDL-------------------------------------------KRLIGRRTIADIIN 245 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 TGE++ A +++ D ++ L + K ++ + P + L D ND A+ Sbjct: 246 METGEVMLDAGSKINEDNISILREMKVKEVDVIEFPKGKDNPVLINCLEKDGVNDYEDAV 305 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-----GSG 418 + + +MRPGEP T E AE+ + LFFS +DL VGR K N + Sbjct: 306 KKFHTIMRPGEPSTIENAEAELKRLFFSPKTFDLGIVGRYKINSKFEFNNPKEFSKADDR 365 Query: 419 ILSKDDIIDVMKKLIDI--RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 +L K DII+ ++ L+ + DDIDHLGNRRIRSVGE+ NQ ++G RVER +K Sbjct: 366 VLRKQDIIETVRYLVMLMSEAENYYPDDIDHLGNRRIRSVGELIANQLKLGFSRVERVIK 425 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+++ + + PQ +I+ KPI+A + EFFGSSQLSQFMDQ NPL+E+THKRR++ALGPG Sbjct: 426 ERMTVQEPEQQTPQLLISIKPITAVINEFFGSSQLSQFMDQTNPLAELTHKRRLNALGPG 485 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 GL+R+RAGFEVRDVH +HYGR+CPIETPEGPNIGLI S+S +A+ N+YGF+ETPYR V + Sbjct: 486 GLSRDRAGFEVRDVHYSHYGRMCPIETPEGPNIGLILSMSSFARVNDYGFIETPYRLVKN 545 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 G V ++ YL+A +E + +AQ+NS +DE+G F L++ R +G+ S ++ YMD++ Sbjct: 546 GKVQKQVEYLTADKEEYHYMAQSNSTVDEKGEFTSKLISTRHRGDFPFRSPAEIQYMDLA 605 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 QVVSV +LIPFLEHDDANRALMG+NMQRQAVP L + P VGTGME A D+GV Sbjct: 606 PLQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLTEEAPFVGTGMEARAAYDAGVCI 665 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 VAK+ GVV VDA+ + IK ++ + I Y L K+ ++NQ TC NQ P VS+ Sbjct: 666 VAKKDGVVSKVDATGVWIKEDQSK------EIVHYPLIKFKKTNQGTCFNQKPNVSMLHT 719 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 T G+++ RV NG +L+S E +F + + Sbjct: 720 ------------TTGGKVSKVSKERVEVTTPNGEKETHELLLS----DEVQFHAVVKEGQ 763 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 G GE G + G +L L Sbjct: 764 EVGIGAPVAGQII-------KGEKYGDF---------GQILQKGTVL-ANGPSTDAGYLA 806 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 +L A + + +D+ L +S +I VF+ +E+ + ++ +Q Sbjct: 807 LGRNVLVAFMPWEGYNFEDAIL-----ISERIIKDDVFSSIHIEEFEIQARETKLGQEQI 861 Query: 957 KKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 +D+ +E ++ G + +LV + D P + L ++ Sbjct: 862 TRDIPNLSDKAFRDLDESGVIRVGAEVKPGDILVGMVTPKGETDLTPEYKLLHSIFGEKA 921 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 K+ + L + K R GD+LA GV ++VKVY+A KR++ GDKM Sbjct: 922 KEVRDSSLRMPNGFEGTVIDIK----RYSRETGDELAAGVEEMVKVYVARKRKLLVGDKM 977 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKGV++++ EDMPY E+G+PVDIVLNPLGVPSRMN+GQI ET LG AAK +G Sbjct: 978 AGRHGNKGVVARVMAQEDMPYMEDGSPVDIVLNPLGVPSRMNLGQIFETQLGFAAKKLGI 1037 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + + +F ++A Q D Sbjct: 1038 NFETPVFDGASEGDVNDFCKKAGLPENSKFQLYDG------------------------- 1072 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 +G+ + V GY+YMLKL HLVDDK+HAR Sbjct: 1073 -------------------RTGEKFI----------NQVFCGYIYMLKLAHLVDDKIHAR 1103 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 STG YSLVTQQPLGGKAQFGGQR GEMEVWALEAYGA++TLQE+LT+KSDD+ GR ++Y+ Sbjct: 1104 STGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASHTLQELLTIKSDDMLGRARIYE 1163 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 IV G H ++PG+PESFNVL++E+R L ++I ++D Sbjct: 1164 AIVKGIHSIKPGIPESFNVLVQELRGLALDIIIKD 1198 >UniRef50_C6HVV1 DNA-directed RNA polymerase n=100 Tax=Bacteria RepID=C6HVV1_9BACT Length = 1729 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 526/1115 (47%), Positives = 710/1115 (63%), Gaps = 90/1115 (8%) Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE------YIAGKVVAKDYIDESTG 307 E V V ++ +++D +I + E + V + + G Sbjct: 667 ISEHKKLVLVRSKHEDLRVLVQSSQENDGNIITLTTEKPVTMQDLQSYVHMFELEEPKKG 726 Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS---ALV 364 + L +S + +++ + E L + R+ A+V Sbjct: 727 NPYKKEGELFEFEDLDVAKKSKKNNVSLVYSATNKSHDLLLELLDLAKNPHRIESDPAVV 786 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 EIY+ +RPGE P E A F+ FF+ RYDLS+VGR+K N L E + +L+K D Sbjct: 787 EIYKKIRPGEVPHVETARQFFDQSFFNSKRYDLSSVGRLKLNSKLGIRESLSNRLLTKSD 846 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL 484 I++V++ ++D+ KGE+DDIDHLGNRR+RSVGE+ ENQFR+GLVR+ERA+KERL+LGD Sbjct: 847 IVEVIRYMVDLLENKGEIDDIDHLGNRRVRSVGELLENQFRIGLVRMERAIKERLNLGDP 906 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 ++++ D IN KP++A +KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGLTRERAG Sbjct: 907 ESVISSDPINVKPVTAIIKEFFGSSQLSQFMDQTNPLAEVTHKRRLSALGPGGLTRERAG 966 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 FEVRDVH +HYGR+CPIETPEGPNIGLI SL+ +A+ N++GF+E+P R V +G+ EI Sbjct: 967 FEVRDVHASHYGRICPIETPEGPNIGLITSLATFARVNDFGFIESPVRVVENGIAKPEIV 1026 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 YLSA++ Y+IAQA++ LD+ G E V+ R KG+ S DQV Y+DV+ QQ+VSV Sbjct: 1027 YLSAMDGDKYIIAQASTKLDQNGALTEPQVSARFKGDFISVSPDQVQYIDVAPQQIVSVA 1086 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 +LIPFLEH+DANRALMG+NMQRQAVP LR PLVGTGME+ VA DSG A G V Sbjct: 1087 TALIPFLEHNDANRALMGSNMQRQAVPLLRPSAPLVGTGMEKVVARDSGYVIYATEDGEV 1146 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 +D + +K G+ Y L K+ RSNQNTC+NQ +S ++GDVL Sbjct: 1147 VKIDGTSFTVKY-------KNTGLKTYPLIKFRRSNQNTCLNQKVLLSPRTKFKKGDVLV 1199 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 DGPST+ G+LA+GQN+ VAFMPW GYNFED+IL+SER+V++D FT+IHI+E +R+TK Sbjct: 1200 DGPSTERGDLAMGQNVLVAFMPWGGYNFEDAILISERLVRDDMFTSIHIEEFELEARETK 1259 Query: 845 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 G EEIT DIPN+ + AL LDE GIV IGAEV GDILVGKVTPK ETQLTPEE+LLRA Sbjct: 1260 QGKEEITRDIPNLSDEALKNLDEGGIVRIGAEVKPGDILVGKVTPKAETQLTPEERLLRA 1319 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL 964 IFG+K+++ KD+SL VP G+ G V+DV++ +R G+EK++ + + + Sbjct: 1320 IFGDKSANWKDASLTVPAGIEGIVVDVKILSRKGIEKEEAVMAAPMHGQDIGSLTHAYQG 1379 Query: 965 QILEAG------------LFSRIRAVL--VAGGVEAEKLDKLPRDRW------LELGLTD 1004 ++ + +L G V +K +L D + L+D Sbjct: 1380 ELRKVEEEKKEKIKAFLLGKVIKEDILDAETGDVILKKKRRLTTDTLEKLADYSAITLSD 1439 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 +++Q++L+ + + E + + + + ++ +GD+LAPGVLK+VKVY+A+KR++ GD Sbjct: 1440 QKEQDELQAIESRTKEKIEAIQMRHDERIGRLKKGDELAPGVLKLVKVYVAMKRKLSVGD 1499 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 KMAGRHGNKGV+S+I P+EDMP+ +GTPVDI+LNPLGVPSRMN+GQILETHLGMAA+ + Sbjct: 1500 KMAGRHGNKGVVSRIVPVEDMPFLPDGTPVDIILNPLGVPSRMNVGQILETHLGMAARAL 1559 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G + + +++ +++ + VD + G Sbjct: 1560 GLHVATPVFDGATEEEIKAMLKKGGISETGQTRLVDG---------------KTGEVFER 1604 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 PV TVG MYM KL+HLVDDK+H Sbjct: 1605 PV---------------------------------------TVGVMYMFKLHHLVDDKIH 1625 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 ARS G YSLVTQQPLGGKAQFGGQR GEMEVWAL+AYGAA TLQE LTVKSDDV+GR++M Sbjct: 1626 ARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALQAYGAASTLQEFLTVKSDDVSGRSRM 1685 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Y+ IV G + ++PG+PESFNVL+KE++SL ++IEL Sbjct: 1686 YEAIVRGENYLDPGLPESFNVLIKELQSLALDIEL 1720 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 114/258 (44%), Positives = 167/258 (64%), Gaps = 15/258 (5%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGNS 66 +R +FG Q +DV L+ IQ S+++F++ D GL++AF SVFPI+ Y+GN Sbjct: 8 VRHNFGGSQQFIDVQDLIEIQKRSYERFLQLDVPPSLREDSGLQSAFLSVFPIEDYNGNY 67 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL-----------VIYEREAPEGTVK 115 + ++ Y LGEP ++ EC RG+TY+APL++K+R+ + P +VK Sbjct: 68 RIDFIEYSLGEPKYEEYECLERGMTYAAPLKIKIRIAALEQNKEIDKTSPLSKEPSFSVK 127 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +KE+E Y+G++PLMT GTF+INGTERV+VSQLHRSPGVFF DK KT +G L+ +R Sbjct: 128 YMKEEEKYLGDLPLMTTKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRLTGTPLFTSR 187 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 IIPYRGSW+DFE+D KDNL+VRIDR++K PATI+L+A+ T+ ++ ++ +I+ Sbjct: 188 IIPYRGSWIDFEYDQKDNLYVRIDRKKKFPATILLKAMGMTSADVVKEYYNIETLQIKPG 247 Query: 236 KLQMELVPERLRGETASF 253 ++ G T F Sbjct: 248 APELYAYFPIEPGSTLPF 265 Score = 68.7 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 17/177 (9%), Positives = 41/177 (23%), Gaps = 19/177 (10%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDL---------FFEKVIFEIRDNKLQMELV 242 D + + + + R + Y + + +K ++ ++ + Sbjct: 70 DFIEYSLGEPKYEEYECLERGMTYAAPLKIKIRIAALEQNKEIDKTSPLSKEPSFSVKYM 129 Query: 243 PE--------RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE--VPVEYI 292 E L +F I +V V + R + I Sbjct: 130 KEEEKYLGDLPLMTTKGTFIINGTERVVVSQLHRSPGVFFSHDKTKTRLTGTPLFTSRII 189 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 + D+ + L + + L G + + I Sbjct: 190 PYRGSWIDFEYDQKDNLYVRIDRKKKFPATILLKAMGMTSADVVKEYYNIETLQIKP 246 >UniRef50_A8Z5T3 DNA-directed RNA polymerase subunit beta n=35 Tax=Bacteria RepID=RPOB_SULMW Length = 1328 Score = 886 bits (2288), Expect = 0.0, Method: Composition-based stats. Identities = 516/1354 (38%), Positives = 765/1354 (56%), Gaps = 135/1354 (9%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI----EQDPEGQYGLEAAFRSVFP 58 + +T++K I +F + P L IQ+ SF F G F FP Sbjct: 12 FPFTKEKTI--NFASVRNKISYPDFLDIQIKSFTNFFCINYTYKNISNKGFYKVFIEYFP 69 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK--- 115 I + ++SY++ +P++ ++EC RG+TY+ +R + ++ + K Sbjct: 70 ISDSKNKFIIDFISYKIYDPLYSIEECIKRGLTYNVYIRARFKIYRTRKRKITIENKRTK 129 Query: 116 --DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 + Q+VY G P MT +G+F+ NG+ERVIVSQLHRSPGVFF + + Sbjct: 130 YFETIYQDVYFGTCPYMTPSGSFIFNGSERVIVSQLHRSPGVFFG---QYDIPNLPKISY 186 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEI 232 ARIIP +GSW++ D + +++ +D +++LP T +LRAL YT + IL++F I Sbjct: 187 ARIIPLKGSWIELSTDINNVMYIYLDIKKRLPITTLLRALGYTRDIDILNIFNLAEEVNI 246 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + L GR + AR + + + + I Sbjct: 247 NKVNYKKFL------------------------GRTLAARIFKTSYQKFEENDILLERNI 282 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 K D I ++I + + I TL+ Sbjct: 283 KLKKYHIDIILYYKIKVISLYKKNEKNE-------------------KNLYYSIIHNTLK 323 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 DPTN + A + IY+ ++ P + A+ FF E L VGR K N++L + Sbjct: 324 KDPTNSQKEANIYIYKELKDSFPKNDKKAKLFINKFFFDE--THLGEVGRYKLNKTLKLD 381 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 IL+ +DII +++ LI + N K EVDDID+L NRR+++VGE Q+ +G+ RV Sbjct: 382 FPLKDQILNIEDIISIIENLIALCNNKKEVDDIDNLANRRVKTVGEQLYTQYTIGIARVS 441 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 R +KER+++ D +TL P ++IN+K +++ + FFG+ +LSQFMDQ NPL+E+THKRRIS+ Sbjct: 442 RIIKERINVKDNETLTPLELINSKTLTSVINSFFGTDELSQFMDQTNPLAEMTHKRRISS 501 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 LGPGGL+RERAGFE+RDV+ +HYGR+CPIETPEGPNIGLI+SL V+A+ N GF+ETPY Sbjct: 502 LGPGGLSRERAGFEIRDVNYSHYGRLCPIETPEGPNIGLISSLCVFAKINSMGFIETPYF 561 Query: 593 KVTDGVVT--DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 KV G V + Y+S+ +E +I QAN+ L+ + +++ + R + + + ++ Sbjct: 562 KVKKGKVVINEAPIYISSDQEYGKLITQANAILNYKTGVLKNNIIVRVNADFPMVNYKKI 621 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +Y+DVST Q+ S+ ASLIPFLEHDDANRALMG+NM RQ+VP L P+VGTG+E+ +A Sbjct: 622 NYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGLEKHLAQ 681 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP---GEAGIDIYNLTKYTRSNQNTCINQ 767 A+ G+V+ VDA+ I +K E E I Y L K+ ++NQNTC+N Sbjct: 682 YVNALIYAEGDGIVESVDANNIKVKYFNSEKEKLLSFEKRIKTYKLIKFRKTNQNTCLNI 741 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V G V +G VL +G +T G+LALG+N++VAFMP+ GYNFED+I++SE+VV+ED Sbjct: 742 RPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDAIVISEKVVREDW 801 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI E + RDTKLG EE T DIPN E KLD+ GI+ IG+EV GD+L+G++ Sbjct: 802 FTSIHIDEYSLEVRDTKLGMEEFTFDIPNFNEENKKKLDKYGIIKIGSEVKPGDVLIGRI 861 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 TPK E + EE L+AIFG+K +K++SL+ + + G VID +++++ ++D++ Sbjct: 862 TPKKEGYPSSEENFLKAIFGKKVGTIKNTSLKADSSLFGVVIDTKIYSKFSSKEDEQKQF 921 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR------------- 994 + + K+L ++L L + + G + + + +P+ Sbjct: 922 QIKKLNNKFMKNLKLLRKLLINKLILVLEGSVSEGILNSSYKEIIPKGKILNKLNLKKLL 981 Query: 995 ---DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 + + + ++ K N + ++ + Y +E + KL+ K+ ++ GD++ G++KI K Sbjct: 982 KNQEIIYQNWVNNKYKNNLVFKIIKFYYLKINELKIKLKRKKNRLLIGDEITSGIIKIAK 1041 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V +A KR+++ GDKM+GRHGNKG++++I EDMPY E+GT VD+VLNPLGVPSRMN+GQ Sbjct: 1042 VLIAKKRKLKVGDKMSGRHGNKGIVARIVKEEDMPYLEDGTSVDLVLNPLGVPSRMNLGQ 1101 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 I ET LG A + +G + + + ++ ++ A Sbjct: 1102 IYETILGWAGEKLGINFSTPIFDGASIEEISKYTDIANLPSFGNTYL------------- 1148 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 FDG + F++PVTVG +Y Sbjct: 1149 ---------------FDGETGEK--------------------------FDQPVTVGVIY 1167 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 MLKLNH+VDDKMHARS G YSL+TQQPLGGK++FGGQR GEMEVWALEA+GAA L+E+L Sbjct: 1168 MLKLNHMVDDKMHARSIGPYSLITQQPLGGKSKFGGQRLGEMEVWALEAFGAANILREIL 1227 Query: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 TVKSDDV GRTK Y+ IV PG+PESF+V Sbjct: 1228 TVKSDDVKGRTKTYEAIVKRETIPNPGIPESFHV 1261 >UniRef50_D1B5Y3 DNA-directed RNA polymerase n=9 Tax=Bacteria RepID=D1B5Y3_THEAS Length = 1201 Score = 885 bits (2286), Expect = 0.0, Method: Composition-based stats. Identities = 457/1363 (33%), Positives = 674/1363 (49%), Gaps = 260/1363 (19%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSV 56 M R+ GK+ ++++P L+ +Q S++ F + D + GL+ F+ V Sbjct: 1 MAVEVPSLMAPRRYLGKQKDLIELPDLVEVQRHSYEWFFQADEDPNFRRLQGLQELFKEV 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI+SY GN L++V Y + P ++E + R +T+S P+R +RLV + + Sbjct: 61 FPIESYDGNFALEFVRYYVDPPTISIEEARERDLTWSRPIRATIRLVN-------RSNGE 113 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKE+EVY+G+ P+MTD GTF+INGTERV+VSQL RS GV+F +D S G+ Y A++ Sbjct: 114 IKEEEVYLGDFPVMTDRGTFIINGTERVVVSQLARSAGVYFSADLS---SPGQETYAAKL 170 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IP RG+WL+F+ P + L V+ID R+K+P T+ L+AL Sbjct: 171 IPDRGAWLEFDLTPSEFLSVKIDNRKKIPVTMFLKALG---------------------- 208 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 + E LR A+ V+ ++V E + G + Sbjct: 209 --VPTDDELLRLFGAT-----------------------------VEEVDVVEEDVRGML 237 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ + S G +I N ++ + L +L + G R+ + ++ETL DPT Sbjct: 238 LAEPIV-GSDGRVIFHKNDRITKEHLDELWKQGRTRVAVWRVDHS-----VAETLEKDPT 291 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 + A++EI+R ++P EPP E A +LFF RY+L VGR K NR L + + Sbjct: 292 SSTDEAMLEIFRRLKPNEPPRMENAREHMHSLFFDSRRYNLGRVGRYKLNRRLGLQVDDE 351 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 +L+ +D++ ++ L+ +R+G DDIDHLGNRR+R++GE+ +NQ R+GL+R+ER K Sbjct: 352 QRLLTVEDVVAIVNGLLKLRDGLEREDDIDHLGNRRVRAIGELLQNQVRIGLLRMERIAK 411 Query: 477 ERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGP 535 ER++ + DL + +D+IN +PISAA++EFFGS QLSQFMDQ NPL+E+TH+RR+SALGP Sbjct: 412 ERMTTIPDLSSATAKDLINVRPISAALREFFGSGQLSQFMDQTNPLAELTHRRRLSALGP 471 Query: 536 GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT 595 GGL+RERAGFE RDVH THYGR+CPIETPEG NIGL+ SL+ YA+ NEYGFL TP R+V Sbjct: 472 GGLSRERAGFEARDVHYTHYGRICPIETPEGSNIGLVTSLATYAKINEYGFLVTPRRRVV 531 Query: 596 DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 DG VT E+ YLSA +E Y + A++ + E+G + D V R +G+ Sbjct: 532 DGRVTGEVVYLSADDEDEYNVGMASTPVGEDGSILIDEVHVRHRGDI------------- 578 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 M Q + S Sbjct: 579 ------------------------RMVPKDQVDFLDV-------------------SPKQ 595 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGE 775 V+ G++ +++ + M + + P V G Sbjct: 596 IVSVSTGLIPFLEHDDANRALMGSNMQRQAVPLV---------------RAEAPLVGTGI 640 Query: 776 PVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 + D S ++ T + Sbjct: 641 EA---KIARDSGSC--------------------------------ILARRSGTVEFVDA 665 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 V R G + + + + +V G V GD++ +G +L Sbjct: 666 DRVVIRAED-GTLNQYRLVKFRRSNQGTVIHQRPLVRKGDPVKAGDVIADGQACQG-GEL 723 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQ 955 +L A + + +D+ L V+ +T +E+ + ++ ++ Sbjct: 724 ALGRNVLVAFVSWEGYNFEDAILLSQ-----RVVKEDYYTSIHIEEYEVEARDTKLGPEE 778 Query: 956 AKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 +D+ +E I+ G R +LV + D+ P +R L ++ Sbjct: 779 ITRDIPNVGDDALKNLDENGIVRIGAEVRAGDILVGKVTPKGESDQSPEERLLRAIFGEK 838 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 ++ + L + E K ++ +DL+PGV ++VKVY+A R+I GDK Sbjct: 839 AREVRDSSLRVPHGEGGKVVAIKRLSREH---NSEDLSPGVNEVVKVYVAQFRKITEGDK 895 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 MAGRHGNKGV+SKI P EDMP+ +GTPVD+VLNPLGVP + +G Sbjct: 896 MAGRHGNKGVVSKILPEEDMPFLSDGTPVDVVLNPLGVP---------------SRMNLG 940 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 ++ + G +ATP Sbjct: 941 QVFETVM---------------------------------------GFVAMHNGWKVATP 961 Query: 1186 VFDGAKEAEIKELLKL------GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 VF+GA + EI +L+ +L +I LYDGRTGE ++ VTVG MYMLKL HLV Sbjct: 962 VFEGADQEEIFQLVDKIRENKYPELTRDCKITLYDGRTGEPMDKKVTVGVMYMLKLIHLV 1021 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+HARSTG YSL+TQQPLGGK QFGGQRFGEMEVWALE YGAA+ LQE+LTVKSDD+ Sbjct: 1022 DDKIHARSTGPYSLITQQPLGGKTQFGGQRFGEMEVWALEGYGAAHMLQEILTVKSDDIR 1081 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 GR K Y+ IV G + +PG+PESF VL+KE++ LG+++E+ E Sbjct: 1082 GRLKTYERIVKGQNLAKPGVPESFRVLIKELQGLGVDVEIVYE 1124 >UniRef50_C0QWX6 DNA-directed RNA polymerase n=3 Tax=Brachyspira RepID=C0QWX6_BRAHW Length = 1173 Score = 881 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 466/1347 (34%), Positives = 663/1347 (49%), Gaps = 242/1347 (17%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE----GQYGLEAAFRSVFPIQSYSGNSE 67 R +F + V++ P LL+IQ +S++ F+++D GL+ S+FPI + + + Sbjct: 29 RVNFSRTASVIEPPDLLAIQKESYESFLQKDVPENKRKNEGLQEVLTSIFPIVASNEKMQ 88 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 ++++SY +GEP +E + R TY+ P ++K++L + + E I EQE+++G+I Sbjct: 89 IEFISYSIGEPKITEKEARRRDKTYAYPFKIKVQLTVRDPER-------IIEQEIFVGDI 141 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P MTD GTF++NG ERVIVSQ+HRSPGV F+ S ++ A+IIP RG+WL+FE Sbjct: 142 PAMTDRGTFIVNGAERVIVSQIHRSPGVVFNR------SDRDAMFVAKIIPDRGTWLEFE 195 Query: 188 FD-PKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPER 245 D KD ++VRIDR++KLP T+ LRA+ T E+IL LF+ + I KL E E Sbjct: 196 LDTKKDIMYVRIDRKKKLPVTVFLRAIGITTNEEILKLFY--EVDNISLEKLSDENSKEA 253 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 L G + + Y E+ Sbjct: 254 LIGRRSYSTV---------------------------------------------YDTEN 268 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 E+I ++ +L +L SG K I L + I TL D T ++ A + Sbjct: 269 PDEIILNPGELINPNLAERLLMSGIKEISVLNMEAIKDNVTIINTLDKDTTKNQEEACTK 328 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 IY ++RPGEP E +L F Y L VGR K N+ L E E +L DI Sbjct: 329 IYNVIRPGEPALIENVVRTCNDLVFDPKSYALGDVGRYKLNKRLNFPESEQDKVLRHKDI 388 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 I+ ++ LI + + ++DDIDHLGNRR+RSVGE+ Q + G R+ER KER+ + D++ Sbjct: 389 IETIRFLIKVFINEEQLDDIDHLGNRRVRSVGELLSIQIKAGFTRMERIAKERMQMQDME 448 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + PQ +++ K I A +KEFFG++QLSQFMDQNNPLSEITHKRR++ALG GGLTR+RAGF Sbjct: 449 AVTPQSLVSIKLIQAVIKEFFGTNQLSQFMDQNNPLSEITHKRRLNALGQGGLTRDRAGF 508 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 EVRDVH THYG++CPIETPEGPNIGLI SL+ YA+ N++GFLETPYRKV DG VTDEI Y Sbjct: 509 EVRDVHHTHYGKICPIETPEGPNIGLIVSLATYAKINKHGFLETPYRKVVDGKVTDEIEY 568 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 L+A +E Y IA AN+ L+E+G F ++L++ R + E S D Sbjct: 569 LTAHDEEKYHIADANAPLNEDGTFKDNLISTRFRSEFPYSSPD----------------- 611 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 Q Q + S V+ ++ Sbjct: 612 --------------------QVQYMDV-------------------SPQQIVSLSSSLIP 632 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 +++ + M + P V G + Sbjct: 633 FLEHDDANRALMGSNMQRQSVP---------------LLYPEAPIVGTGVEA---KICQP 674 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 G + G+ ++V +N I I+ S D Sbjct: 675 GTGIAVHAKRAGKVIKVV------HNE------------------IVIKPTKQNSDDDLD 710 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 E + + + +V +G V G L+ +L +L A Sbjct: 711 VYELVKYQ----RTNQDTNYHQRPVVNVGDVVKAG-GLLADGPATDHGELALGRNVLAAF 765 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS---- 961 + + +D+ L ++ VFT +E+ ++ + +D+ Sbjct: 766 MIFEGYNFEDAILLSR-----RLVQEDVFTSIHIEEFSVEARETKLDKENITRDIPNVSD 820 Query: 962 ------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 +E I+ G + +LV + + P R L ++ + + L Sbjct: 821 AAFKNLDERGIVRIGAKVKAGDILVGKVTPKGETEITPEYRLLHSIFGEKARDVKDTSLR 880 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 + + + ++ ++ GD+L PGV ++VKV+LA KR IQ GDKMAGRHGNKGV Sbjct: 881 VPHGKDGTVIDVRVYSR----ENGDELKPGVEEVVKVFLAKKRIIQEGDKMAGRHGNKGV 936 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 +++I PIEDMP+ E+GTPVDI LNPLGVPSRMNIGQ++E LG + +G K + + Sbjct: 937 VARIMPIEDMPFLEDGTPVDICLNPLGVPSRMNIGQVIEMLLGWSGHKMGLKYACPVFEG 996 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 + LRE + + D T F Sbjct: 997 PKEEALREAFVASGMNPNGKVRLYDGRT--------------------GEPFKN------ 1030 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 V VGYMYMLKLNHLV+DK+HARSTG YSLVT Sbjct: 1031 ----------------------------DVAVGYMYMLKLNHLVEDKVHARSTGPYSLVT 1062 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQM 1315 QQPLGGK+QFGGQR GEMEVWALEAYGAA LQE LTVKSDD+ GR ++Y++IV G+ Sbjct: 1063 QQPLGGKSQFGGQRLGEMEVWALEAYGAANMLQEFLTVKSDDMTGRARIYESIVKGDVIS 1122 Query: 1316 EPGMPESFNVLLKEIRSLGINIELEDE 1342 PG+PESFNVL++E+R LG+NI + DE Sbjct: 1123 SPGIPESFNVLVQELRGLGLNITIHDE 1149 >UniRef50_A3DIZ4 DNA-directed RNA polymerase subunit beta n=224 Tax=Bacteria RepID=RPOB_CLOTH Length = 1250 Score = 879 bits (2272), Expect = 0.0, Method: Composition-based stats. Identities = 476/1367 (34%), Positives = 677/1367 (49%), Gaps = 231/1367 (16%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ + +R + K +V+D+P L+ IQ +S+++F+++ G + F+ V PI Sbjct: 1 MVHPVKLGRNVRMSYSKIDEVIDMPNLIEIQKNSYEQFLKE------GFKEVFKDVNPIT 54 Query: 61 SYSGNSELQYVSYRL-GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 Y+GN L++V Y L P + V EC+ R TY+APL+VK+RL+ E ++KE Sbjct: 55 DYTGNLILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLINKE-------TGEVKE 107 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 QE++MG+ PLMT+ GTF+ING ERVIVSQL RSPG+++ K +GK L++ +IP Sbjct: 108 QEIFMGDFPLMTETGTFIINGAERVIVSQLVRSPGIYYAMKIDK---AGKQLFSNTVIPN 164 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKV--------IF 230 RG+WL++E D D L VRIDR RKLP T+++RAL Y T +I +LF E Sbjct: 165 RGAWLEYETDSNDVLSVRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDS 224 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVP 288 + + +E+ GE + + + + R A+ R + + Sbjct: 225 TKTEEEGLLEIYKRLRPGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSIAARI 284 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 +IAG ++ D TGE+I A +S + + +G + + D + I Sbjct: 285 HGFIAG----ENIKDPDTGEIIVAEGETISREKAETIQNAGVNTV--ILRVDGKNVKVIG 338 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 + Y P E E + E + + Sbjct: 339 NDMVDIKR----------YVDFDPKEIGINEKVKRDVLMEILEEYKGKGDDAIKKALQER 388 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 + + ++K+DII + +I + G G DDIDHLGNRR+RSVGE+ +NQFR+GL Sbjct: 389 IDDLIPKH---ITKEDIISSISYIIGLSYGIGSTDDIDHLGNRRLRSVGELLQNQFRIGL 445 Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKR 528 R+ER V+ER+++ DLD + PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPL+E+THKR Sbjct: 446 SRMERVVRERMTIQDLDVVTPQALINIRPVAAAIKEFFGSSQLSQFMDQTNPLAELTHKR 505 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ NEYGF+E Sbjct: 506 RLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARVNEYGFIE 565 Query: 589 TPYRKVTD---GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 TPYRKV+ G VT+EI YL+A EE Y+IAQAN LDEEG Sbjct: 566 TPYRKVSKEEPGKVTNEIVYLTADEEDEYIIAQANEPLDEEG------------------ 607 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 I + + + Sbjct: 608 --------------------RFISNKVVCRYKEEFIEVDPSKI----------------- 630 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 S V+ ++ +++ + M Sbjct: 631 -DFMDVSPKQIVSVATSMIPFLENDDANRALMGANMQRQAV------------------- 670 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 P + P+ G + + D G + L +N V V++ Sbjct: 671 ---PLIKTESPIV-GTGIEYRAARDSGVVILAKNPGV--------------------VEK 706 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 I I TK G + + + + +++ IV G EV GD+ + Sbjct: 707 VTANEIII--------RTKDGKRDTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDV-IA 757 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 ++ + +L + + +D+ L +S ++ VFT +E+ + Sbjct: 758 DGPSTDNGEIALGKNVLVGFMTWEGYNYEDAIL-----ISERLVKDDVFTSIHIEEYEAE 812 Query: 946 LEIEEMQLKQAKKDLSE----------ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 ++ + +++ I+ G R +LV + + + Sbjct: 813 ARDTKLGPEDITREIPNVSEDALKDLNSEGIIRIGAEVRAGDILVGKVTPKGETELTAEE 872 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 R L ++ ++ + L + E + K+ + GD+LAPGV K+V+VY+A Sbjct: 873 RLLRAIFGEKAREVRDTSLRVPHGESGIVVDVKIFTR----ENGDELAPGVNKLVRVYVA 928 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 KR+I GDKMAGRHGNKGVIS+I P+EDMP+ +GTP+DIVLNPLGV Sbjct: 929 QKRKISVGDKMAGRHGNKGVISRILPVEDMPFLPDGTPLDIVLNPLGV------------ 976 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 + IG + L + Sbjct: 977 ---PSRMNIGQVLEVHLGYAAKAL------------------------------------ 997 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 G +ATPVFDGA E +I + L+ L G+ LYDGRTGE FE VTVGYMYMLKL Sbjct: 998 ---GWKVATPVFDGATEEDIVQTLRKAGLAEDGKSILYDGRTGEPFENRVTVGYMYMLKL 1054 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKS Sbjct: 1055 AHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKS 1114 Query: 1296 DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 DDV GR K Y+ IV G + EPG+PE F VL+KE++SL +++++ E Sbjct: 1115 DDVVGRVKTYEAIVKGENVPEPGIPECFKVLIKELQSLCLDVKVYSE 1161 >UniRef50_B2TIG8 DNA-directed RNA polymerase subunit beta n=92 Tax=Bacteria RepID=RPOB_CLOBB Length = 1249 Score = 877 bits (2266), Expect = 0.0, Method: Composition-based stats. Identities = 467/1367 (34%), Positives = 669/1367 (48%), Gaps = 232/1367 (16%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MV+ KR R FGK V ++P L+ +QLDS+Q F+ + GL F + PI Sbjct: 1 MVHPVQVGKRTRMSFGKVKDVTEMPNLIEVQLDSYQWFLRE------GLHEVFEDINPIT 54 Query: 61 SYSGNSELQYVSYRLGEP--VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 +++GN L++V Y+L + V+EC+ R TY+APL+V +RL E +IK Sbjct: 55 NFTGNLVLEFVDYKLDMDNIKYSVEECKERDATYAAPLKVSVRLQNNE-------TGEIK 107 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 EQEV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+++ K +GK LY+A +IP Sbjct: 108 EQEVFMGDFPLMTEQGTFIINGAERVIVSQLVRSPGVYYNYSIDK---TGKKLYSATVIP 164 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIF------- 230 RG+WL++E D D ++VRID+ RKLP TI+ RA+ + + +++LD F E F Sbjct: 165 NRGAWLEYETDSNDIIYVRIDKTRKLPITILARAMGFGSDQELLDFFGEDERFRASIEKD 224 Query: 231 -EIRDNKLQMELVPERLRGETASFD--IEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 + +E+ GE + D I ++ + R +R R + L Sbjct: 225 NTKTREEGLLEIYKRLRPGEPPTVDSAISLIDSLFFDAKRYDLSRVGRYKFNKKLALNL- 283 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 IA ++ A D I+ STGE++ ++S L + +G K ++ L + L Sbjct: 284 ---RIANQIAAMDVINPSTGEIMVEKGQKISRLLAEDIQNAGIKSVDILVDDKLVR---- 336 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 + + D + ++ E + D Y + + + Sbjct: 337 ---VISNNFVDITKQVPFDVSDLQIKELVHYPTLREIL-------DNYSDETTIKEEIKK 386 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 +L R + + KDDI + + + G G VDDIDHLGNRR+RSVGE+ +NQFR+G Sbjct: 387 NLSRLIPKH---IIKDDIFATISYELGLPYGIGYVDDIDHLGNRRLRSVGELLQNQFRIG 443 Query: 468 LVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 L R+ER VKER+++ D +++ PQ +IN +P++AA+KEFFGSSQLSQFMDQ NPLSE+THK Sbjct: 444 LSRMERVVKERMTIQDQESITPQMLINIRPVAAAIKEFFGSSQLSQFMDQTNPLSELTHK 503 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLINSL+ +A+ NEYGF+ Sbjct: 504 RRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATFARVNEYGFI 563 Query: 588 ETPYRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 ETPYR V T+EI Y +A EE +IAQA LD E+ F Sbjct: 564 ETPYRIVDKENARATEEIRYFTADEEDQCLIAQAKEPLD----------------ENGYF 607 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 +V + LV + Sbjct: 608 VDKKVT----------------------------------------VRYLEDVLVVPATD 627 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 + S V+ ++ +++ + M Sbjct: 628 VDLMDVSARQIVSVATAMIPFLENDDASRALMGSNMQRQAVP---------------LLK 672 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 Q P V G + + D G L +N V Sbjct: 673 PQAPIVGTG--------IEFKAAVDSGVLPKARNAGVV---------------------- 702 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 + + G + + S +++ IV G V +L Sbjct: 703 -----TFVSANEIRVKRDSDGGTDNYRLLKFKRSNQSSCINQRPIVNKGEIVFKNQVL-A 756 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 ++ + + + + +D+ L +S ++ VFT +E+ + Sbjct: 757 DGPSTDLGEIALGKNIRMGFITWEGYNYEDAML-----ISEELVREDVFTSMHIEEYECE 811 Query: 946 LEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 ++ ++ +D+ ++ I+ G R +LV + + + Sbjct: 812 ARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSGDILVGKVTPKGETELTAEE 871 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 R L ++ ++ + L + E + K+ + GD+L PGV ++V+ Y+ Sbjct: 872 RLLRAIFGEKAREVRDTSLRVPHGEAGIIVDIKVFTRE----NGDELNPGVNELVRCYIV 927 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 KR+I GDKMAGRHGNKGVIS+I P EDMP+ +G P+ I LNPLGVPS Sbjct: 928 QKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPDGRPLQICLNPLGVPS---------- 977 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 IG + L Sbjct: 978 -----RMNIGQVLEVHLGWAASKL------------------------------------ 996 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 G I+TPVFDGA E EI+E L+ +G+ LYDGRTGE F+ VTVG MY+LKL Sbjct: 997 ---GWHISTPVFDGATENEIEECLEKAGYNANGKTVLYDGRTGEPFDNLVTVGIMYILKL 1053 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA+TLQE+LTVKS Sbjct: 1054 AHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKS 1113 Query: 1296 DDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 DDV GR K Y+ IV G + EPG+PESF VL+KE+++L +++++ +E Sbjct: 1114 DDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQALCLDVKVLNE 1160 >UniRef50_A8F976 DNA-directed RNA polymerase subunit beta n=177 Tax=Bacteria RepID=RPOB_BACP2 Length = 1196 Score = 874 bits (2258), Expect = 0.0, Method: Composition-based stats. Identities = 454/1356 (33%), Positives = 660/1356 (48%), Gaps = 245/1356 (18%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 13 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 66 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 67 LEFIDYSLGDPKYPVAESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 119 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F K +GK + A +IP RG+WL++E Sbjct: 120 PIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDK---NGKKGFTATVIPNRGAWLEYE 176 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFFEKV--------IFEIRDNKLQ 238 D KD ++VRIDR RKLP T++LRAL ++++ +ILDL E +K Sbjct: 177 TDAKDVVYVRIDRTRKLPVTVLLRALGFSSDQEILDLIGENEYLRNTLEKDNTENADKAL 236 Query: 239 MELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 +E+ GE + + + + + R A R + + + Sbjct: 237 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKL----HIKNRLFNQK 292 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ +D TGE++ L +L K L++G + Sbjct: 293 LAETLVDPETGEILAEKGQILDRRVLDK------------VLPYLENGIGFRKLYPNGGV 340 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 + L I ++ P + G N E Sbjct: 341 VEDEVELQSI-KIYAPSDQE------------------------GEQVINVIGNAYVEEA 375 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 ++ DII + ++ +G G+ DDIDHLGNRR+RSVGE+ +NQFR+GL R+ER V+ Sbjct: 376 VKNITPSDIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVR 435 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ER+S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPG Sbjct: 436 ERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPG 495 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT- 595 GLTRERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS +A+ N +GF+ETPYR+V Sbjct: 496 GLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRFGFIETPYRRVDP 555 Query: 596 -DGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 G VT I YL+A EE NYV+AQAN+ L ++G F Sbjct: 556 ETGKVTPRIDYLTADEEDNYVVAQANALLADDGSF------------------------- 590 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 DD A + S Sbjct: 591 ------------------IDDNIIARFRGENTVVPRNRV-------------DYMDVSPK 619 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 V+ + +++ + M + P V G Sbjct: 620 QVVSAATACIPFLENDDSNRALMGANMQRQAVP---------------LMQPESPIVGTG 664 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMP-WNGYNFEDSILVSERVVQEDRFTTIHI 833 E G++ A + + G VV+ I + Sbjct: 665 -----------------MEYVSGKDSGAAVICRYPG------------VVERVEAKNIWV 695 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 + V G + + + V + ++ IV +G EV G+IL + Sbjct: 696 RRYEDVDGQQVKGNLDKYSLLKFVRSNQGTCYNQRPIVSVGDEVVKGEIL-ADGPSMEKG 754 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL 953 +L ++ + +D+ + S ++ V+T +E+ + ++ Sbjct: 755 ELALGRNVMVGFMTWDGYNYEDAIIM-----SERLVKDDVYTSIHIEEYESEARDTKLGP 809 Query: 954 KQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 ++ +D+ +E I+ G + +LV + +R L Sbjct: 810 EEITRDIPNVGEDALRNLDERGIIRIGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFG 869 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 ++ ++ + L + + K+ + GD+L PGV ++V+VY+ KR+I G Sbjct: 870 EKAREVRDTSLRVPHGGGGIIHDVKVFNRED----GDELPPGVNQLVRVYIVQKRKISEG 925 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DKMAGRHGNKGVISKI P EDMPY +GTP+DI +L + Sbjct: 926 DKMAGRHGNKGVISKILPEEDMPYLPDGTPIDI---------------MLNPLGVPSRMN 970 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 IG + E+ G+ IA Sbjct: 971 IGQVL---------------------------------------ELHMGMAARYLGIHIA 991 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 +PVFDGA+E ++ E L+ + + LYDGRTGE F+ V+VG MYM+KL H+VDDK+ Sbjct: 992 SPVFDGAREEDVWETLEEAGMSRDAKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKL 1051 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Sbjct: 1052 HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVK 1111 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Y+ IV G++ EPG+PESF VL+KE++SLG+++++ Sbjct: 1112 TYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKI 1147 >UniRef50_P22703 DNA-directed RNA polymerase subunit beta n=901 Tax=cellular organisms RepID=RPOB_ANASP Length = 1131 Score = 862 bits (2227), Expect = 0.0, Method: Composition-based stats. Identities = 374/1183 (31%), Positives = 548/1183 (46%), Gaps = 154/1183 (13%) Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEK 227 + L + I L+ F + ++ + R Y + K Sbjct: 48 EELNSFSPITDYTGKLELHFLGHN---YKLKEPKYSVEEAKRRDSTYAVQMYVPTRLLNK 104 Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 +I++ ++ + +P L + +F I +V V + R + + + Sbjct: 105 ETGDIKEQEVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKSEIDKNG-RRTY 161 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 I + + + + + L L G E H Y Sbjct: 162 SASLIPNRGAWLKFETDRNDLVWVRIDKTRKLSAQVLLKALGLSDNEIFDALR--HPEYF 219 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 +T+ + AL+E+YR +RPGEPPT + L ++ FF RYDL VGR K N+ Sbjct: 220 QKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGGQQLLDSRFFDPKRYDLGRVGRYKLNK 279 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 L + +L+ DI+ + LI++ G +DDIDHLGNRR+RSVGE+ +NQ RVG Sbjct: 280 KLRLSVPDTVRVLTSGDILAAVDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQVRVG 339 Query: 468 LVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 L R+ER ++ER+++ D + L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THK Sbjct: 340 LNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHK 399 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RR+SALGPGGLTRERAGF VRD+HP+HYGR+CPIETPEGPN GLI SL+ +A+ N+YGFL Sbjct: 400 RRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNQYGFL 459 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 ETP+R V +G V R ++ + Sbjct: 460 ETPFRPVENGRV-------------------------------------RFDQPAAYMTA 482 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 D+ D + V+ + D N ++G VP + T + Sbjct: 483 DEEDDLRVAPGDI------------PVDENGYIIGPQ-----VPVRYRQEFSTTTPEQVD 525 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 S V V+ ++ +++ + M L K R T + Sbjct: 526 YVAVSPVQIVSVATSMIPFLEHDDANRALMGSNMQRQAV-----PLLKPERPLVGTGLEA 580 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 G + DG +RV S + + Sbjct: 581 QGARDSGMVIVS---RTDGDVV----YVDATEIRVRVS-------GQLPTASGKSTDNGQ 626 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 T+ + G E + L++ +V IG V G +L Sbjct: 627 LTS-------------QKGQEIRYTVSKYQRSNQDTCLNQKPLVRIGERVVAGQVLADGS 673 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 + +G +L + ++ A + + +D+ L +S ++ ++T +EK + Sbjct: 674 STEG-GELALGQNIVVAYMPWEGYNYEDAIL-----ISERLVQDDIYTSIHIEKYEIEAR 727 Query: 948 IEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 ++ ++ +++ +E I+ G + +LV + D+ P ++ Sbjct: 728 QTKLGPEEITREIPNVGEDALRQLDEQGIIRIGAWVEAGDILVGKVTPKGESDQPPEEKL 787 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 L ++ + + L E + +L + + GD+L PG +V+VY+A K Sbjct: 788 LRAIFGEKARDVRDNSLRVPNGEKGRVVDVRLFTREQ----GDELPPGANMVVRVYVAQK 843 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R+IQ GDKMAGRHGNKG+IS+I PIEDMPY +G+PVDIVLNPLGVPSRMN+GQ+ E L Sbjct: 844 RKIQVGDKMAGRHGNKGIISRILPIEDMPYLPDGSPVDIVLNPLGVPSRMNVGQVFECLL 903 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 G A +G + + + I A D Sbjct: 904 GWAGHTLGVRFKITPFDEMYGEESSRRIVHGKLQEARDETGKD----------------- 946 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 + + G+I +YDGRTGE F+RPVT+G YMLKL H Sbjct: 947 ----------------------WVYNPDDPGKIMVYDGRTGEAFDRPVTIGVAYMLKLVH 984 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 LVDDK+HARSTG YSLVTQQPLGGKAQ GGQRFGEMEVWALEA+GAAYTLQE+LTVKSDD Sbjct: 985 LVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDD 1044 Query: 1298 VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + GR + IV G PG PESF VL++E++SLG++I + Sbjct: 1045 MQGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSLGLDIAVH 1087 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 108/350 (30%), Positives = 165/350 (47%), Gaps = 32/350 (9%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRL 75 +P L+ IQ SF+ F+E+ GL S PI Y+G EL ++ +Y+L Sbjct: 21 IEPAFLLPDLIEIQRSSFRWFLEE------GLIEELNSFSPITDYTGKLELHFLGHNYKL 74 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 EP + V+E + R TY+ + V RL DIKEQEV++G++PLMTD GT Sbjct: 75 KEPKYSVEEAKRRDSTYAVQMYVPTRL-------LNKETGDIKEQEVFIGDLPLMTDRGT 127 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE D D ++ Sbjct: 128 FIINGAERVIVNQIVRSPGVYYKSEIDK---NGRRTYSASLIPNRGAWLKFETDRNDLVW 184 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPERLR 247 VRID+ RKL A ++L+AL + +I D F+ + + MEL + Sbjct: 185 VRIDKTRKLSAQVLLKALGLSDNEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRP 244 Query: 248 GETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 GE + + + R R R ++L +V+ I + Sbjct: 245 GEPPTVLGGQQLLDSRFFDPKRYDLGRVGRYKLNKKLRLSV----PDTVRVLTSGDILAA 300 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 LI S+D + L + + L N + G E + + Sbjct: 301 VDYLINLEYDIGSIDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRER 350 >UniRef50_Q2JJ19 DNA-directed RNA polymerase subunit beta n=48 Tax=cellular organisms RepID=RPOB_SYNJB Length = 1139 Score = 858 bits (2217), Expect = 0.0, Method: Composition-based stats. Identities = 375/1160 (32%), Positives = 544/1160 (46%), Gaps = 175/1160 (15%) Query: 196 VRIDRRRKLPATIILRALNYTTEQILD-LFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 +I+R R P R Y + + K EI+D + + +P L + +F Sbjct: 67 YKINRPRYDPEEAKRRDATYQAQIRVPTRLINKETGEIKDMDVFIGELP--LMTDRGTFI 124 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 I +V V + R + + + I + + + G + + Sbjct: 125 INGAERVIVNQIVRSPGVYYKSELDKNG-RRTYSASLIPNRGAWLKFETDKNGLVWVRID 183 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 L L G E ++L H + +T+ + AL+E+YR +RPGE Sbjct: 184 KTRKLSAAVLLKALGLSDSEIY--DNLRHPEFFQKTMEKEGPYTEEEALMELYRKLRPGE 241 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 PPT + L E+ FF RYDL VGR K N+ L E +L+ DI+ V+ LI+ Sbjct: 242 PPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLNLNVAESVRVLTVTDILAVIDYLIN 301 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 + G VDDIDHLGNRR+RSVGE+ +NQ RVGL R+ER ++ER+++ + + L P ++N Sbjct: 302 LEYDIGHVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESENLTPASLVN 361 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THKRR+SALGPGGL+RERAGF VRD+HP+H Sbjct: 362 PKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFAVRDIHPSH 421 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEG 612 YGR+CPIETPEGPN GLI SL+ +A+ N+YGF+E+PY +V +GVV ++ YL+A EE Sbjct: 422 YGRICPIETPEGPNAGLIGSLATHARVNQYGFIESPYYRVENGVVRKDLGMVYLTADEED 481 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 Y V+ V Sbjct: 482 EY---------------------------------------RVAPGDVPVDAEG------ 496 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 + A+ VP + E + V ++ ++ +++ Sbjct: 497 -------RITAD----LVPVRYRQEFTTAHPTEVHYVQVAPVQVISVATSLIPFLEHDDA 545 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + M L K R T + G V Sbjct: 546 NRALMGANMQRQAV-----PLLKPDRPYVGTGLEAQAARDSGMVVVSR------------ 588 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 N V ++ + V R G + Sbjct: 589 -----TNGVVTYVSAD----------------------------EIVVRPDDGGDPIVYR 615 Query: 853 DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 912 + L++ +VY G V G +L +L + +L A + + Sbjct: 616 LQKYQRSNQDTCLNQRPLVYTGDRVVAGQVL-ADGPATEGGELALGQNVLVAYMPWEGYN 674 Query: 913 VKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------E 962 +D+ L +S ++ VFT +EK + ++ ++ +++ + Sbjct: 675 YEDAIL-----ISERLVYDDVFTSVHIEKHEIEARQTKLGPEEITREIPNVGEDALRDLD 729 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK 1022 E I+ G + +LV + D+ P +R L ++ + + L E Sbjct: 730 ENGIVRIGAWVEAGDILVGKVTPKGESDQPPEERLLRAIFGEKARDVRDNSLRVPNGERG 789 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 + ++ + + GD+L PG +V+VY+A+KR+IQ GDK+AGRHGNKG+IS+I PI Sbjct: 790 RVVDVRIFTREQ----GDELPPGANMVVRVYIALKRKIQVGDKIAGRHGNKGIISRILPI 845 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMPY +GTPVD+VLNPLGVPSRMN+GQ+ E LG AA+ +G + M + + Sbjct: 846 EDMPYLADGTPVDVVLNPLGVPSRMNVGQVYECLLGWAAEHLGVRFKLMPFDEMHGLEAS 905 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 A A + D + Sbjct: 906 RLTVEAKLREAREKTGKD---------------------------------------WIF 926 Query: 1203 DL--PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 + G+I+++DGRTGE F++PVTVG YMLKL HLVDDK+HARSTG YSLVTQQPLG Sbjct: 927 NPEGKYCGKIQVFDGRTGEPFDQPVTVGRAYMLKLVHLVDDKIHARSTGPYSLVTQQPLG 986 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP 1320 GKAQ GGQRFGEMEVWALEA+GAAY LQE+LTVKSDD+ GR + IV G PG P Sbjct: 987 GKAQQGGQRFGEMEVWALEAFGAAYILQELLTVKSDDMVGRNEALNAIVKGKPIPRPGTP 1046 Query: 1321 ESFNVLLKEIRSLGINIELE 1340 ESF VL++E++SL +++ + Sbjct: 1047 ESFKVLVRELQSLCLDVSVH 1066 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 161/360 (44%), Gaps = 41/360 (11%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY----------VSYR 74 P L+ IQ +SF F+ + G E S PI Y+G EL + Y+ Sbjct: 15 PDLVEIQRESFLWFLRE------GFEEELLSFSPIIDYTGKLELHFLPEYRPGDPSKGYK 68 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 + P +D +E + R TY A +RV RL+ E +IK+ +V++GE+PLMTD G Sbjct: 69 INRPRYDPEEAKRRDATYQAQIRVPTRLINKE-------TGEIKDMDVFIGELPLMTDRG 121 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 TF+ING ERVIV+Q+ RSPGV++ S+ K +G+ Y+A +IP RG+WL FE D + Sbjct: 122 TFIINGAERVIVNQIVRSPGVYYKSELDK---NGRRTYSASLIPNRGAWLKFETDKNGLV 178 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPERL 246 +VRID+ RKL A ++L+AL + +I D F+ + + MEL + Sbjct: 179 WVRIDKTRKLSAAVLLKALGLSDSEIYDNLRHPEFFQKTMEKEGPYTEEEALMELYRKLR 238 Query: 247 RGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 GE + + + R R R + L + +V+ I Sbjct: 239 PGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLNLNVAE----SVRVLTVTDILA 294 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG-PYISETLRVDPTNDRLSAL 363 LI +D + L + + L N + G + +R T L Sbjct: 295 VIDYLINLEYDIGHVDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSESENL 354 >UniRef50_UPI00019270C2 PREDICTED: similar to DNA-directed RNA polymerase beta subunit n=1 Tax=Hydra magnipapillata RepID=UPI00019270C2 Length = 1140 Score = 858 bits (2215), Expect = 0.0, Method: Composition-based stats. Identities = 474/1198 (39%), Positives = 646/1198 (53%), Gaps = 150/1198 (12%) Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILD---LFFEKVIF 230 A I +++ ++ + D R R L Y + + +++ Sbjct: 60 AFPIVSHNGFVEMKYLEYNLAKPAFDVR-----ECQTRGLTYASAVRAKVQLIIYDRESS 114 Query: 231 EIRDNKLQMELVPERLRGE------TASFDIEANGKVYVEKGRRITARHIRQLEKDDVK- 283 ++ ++ E GE SF I +V V + R + Sbjct: 115 TGQNKVVKEVKEQEVYMGEVPLMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSS 174 Query: 284 -LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD 342 + I + D+ + L + + + L G L LD Sbjct: 175 GKLLFSARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFLD 234 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 G YIS+TLR D T D +A V IYRMMRPGEPPT +A ++LF+ LF++ D YDLS VGR Sbjct: 235 QGAYISQTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGR 294 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 MKFN + R E G +L+ +DI+ V+K L+D+RNG+G+VDDIDHLGNRR+R VGE+AEN Sbjct: 295 MKFNAKMGRSESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAEN 354 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 Q+R GL R+E+AVKERL + + LMP D+IN+KPISAA+KEFFG+SQLSQFM+Q NPL+ Sbjct: 355 QYRTGLARIEKAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMNQTNPLA 414 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 EITHKRR+SALGPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSL++YA+ N Sbjct: 415 EITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLN 474 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 EYGF+ETPYR+V D VT+EI YLSAIEEG YVIAQAN+ LD+EG DLV+ R Sbjct: 475 EYGFIETPYRRVVDSKVTNEIDYLSAIEEGKYVIAQANAALDKEGTLTGDLVSAR----- 529 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGT 702 + +++ + + Q + Sbjct: 530 --------------------------------EKGESILVSADRVQYMDV---------- 547 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 S V+ +V +++ + M + Sbjct: 548 ---------SPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPV-------------- 584 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 + P V G + + D G + + ++ D+ Sbjct: 585 -LRPEKPMVGTG--------IERVAAVDSGTVVTATRGGIV-------DYVDA------- 621 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 T + I+ ++ ++G +I I + + + IV G +++ GD+ Sbjct: 622 ------TRVVIRVNDAEAQAGEVG-VDIYNLIKYQRSNQNTNIHQRPIVKKGDKLSKGDV 674 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 + ++ + +L A + +DS L +S V+ +T +E+ Sbjct: 675 -IADGASTDLGEIAIGQNMLVAFMPWNGYNFEDSIL-----ISERVVAEDRYTSIHIEEL 728 Query: 943 KRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 ++ ++ +D+ +E I+ G LV + Sbjct: 729 VVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVLPGDTLVGKVTPKGETTLT 788 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 P ++ L ++ + L + ++ + GD+L GVLK+VKV Sbjct: 789 PEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTRE-----GDELPAGVLKMVKV 843 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 Y+AVKRR+QPGDKMAGRHGNKGV+SKI P+EDMPY +GTPVDIVLNPLGVPSRMNIGQ+ Sbjct: 844 YIAVKRRLQPGDKMAGRHGNKGVVSKITPVEDMPYLADGTPVDIVLNPLGVPSRMNIGQV 903 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 LE HLG A KG+G +I ML+++ ++R F+++ Y +K DL+ SD EV + Sbjct: 904 LEVHLGWAGKGLGQRIGDMLQREAASTEIRGFLEQVY---NSTGRKEDLAQLSDAEVQEM 960 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR----------LYDGRTGEQFE 1222 A+ L G+P A+PVFDGA E EI ++L+L + + LYDGR+G+ FE Sbjct: 961 AKELTSGVPFASPVFDGATEKEIGDMLQLAYPDDVAKAKGLTATRTQAQLYDGRSGDAFE 1020 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 R TVGYM+ LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG Sbjct: 1021 RTTTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1080 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 A+Y LQEMLTVKSDDV GRTK+Y+NIV G H +E GMPESFNVL+KEIRSLGI+IEL+ Sbjct: 1081 ASYVLQEMLTVKSDDVQGRTKVYENIVKGEHSIEAGMPESFNVLVKEIRSLGIDIELD 1138 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 153/358 (42%), Positives = 213/358 (59%), Gaps = 23/358 (6%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSV 56 M Y+YTE+KRIRK+FG R VL++PYLL +Q D++ F++ D GL+AAF + Sbjct: 1 MAYTYTERKRIRKNFGSRDSVLEIPYLLQMQKDAYTAFLQADVGPKKRTNEGLQAAFEAA 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAP---EGT 113 FPI S++G E++Y+ Y L +P FDV+ECQ RG+TY++ +R K++L+IY+RE+ Sbjct: 61 FPIVSHNGFVEMKYLEYNLAKPAFDVRECQTRGLTYASAVRAKVQLIIYDRESSTGQNKV 120 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 VK++KEQEVYMGE+PLMT G+F+INGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ Sbjct: 121 VKEVKEQEVYMGEVPLMTGKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS 180 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI- 232 ARIIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+ E IL FF I Sbjct: 181 ARIIPYRGSWLDFEFDPKDLLYFRVDRRRKMPVTILLKAIGLNNESILANFFLDQGAYIS 240 Query: 233 ---------RDNKLQMELVPERLRGETAS--FDIEANGKVYVEKGRRITARHIRQLEKDD 281 + ++ + GE + +++ +R R Sbjct: 241 QTLRTDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAK 300 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN 339 + E V+ + I L+ N +D + L + + L N Sbjct: 301 MGR----SESTGPMVLTNEDILAVVKILVDLRNGRGDVDDIDHLGNRRVRCVGELAEN 354 >UniRef50_B4WNB1 DNA-directed RNA polymerase n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WNB1_9SYNE Length = 1150 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 362/1183 (30%), Positives = 545/1183 (46%), Gaps = 173/1183 (14%) Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT-TEQILDLFFEK 227 + L + I L+ F KD R+ + + R Y+ + K Sbjct: 55 EELESFSPITDYTGKLELHFLGKD---YRLKAPKYMVDEAKRRDSTYSVQMYVPTRLINK 111 Query: 228 VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 +I++ ++ + +P L + +F I +V V + R + + Sbjct: 112 ETGDIKEQEVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKAETDKHG-RRTY 168 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 I + + + + + L L G E + L H Y Sbjct: 169 TANLIPNRGAWLKFETDKNDLVWVRIDKTRKLSAQVLLKALGLSDGEIF--DSLRHPEYF 226 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 +T+ + AL+E+YR +RPGEPPT + L E+ FF RYDL VGR K NR Sbjct: 227 QKTIEKEGQFSEEEALLELYRKLRPGEPPTVNGGQQLLESRFFDPKRYDLGKVGRHKLNR 286 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 L E + +L+ DI+ + LI++ G DDIDHLGNRR+RSVGE+ +NQ RVG Sbjct: 287 KLRLNIPESTRVLTPQDIVSAIDYLINLEFDIGNPDDIDHLGNRRVRSVGELLQNQVRVG 346 Query: 468 LVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 L R+ER ++ER+++ D D+L P ++N KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THK Sbjct: 347 LNRLERIIRERMTVSDADSLTPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHK 406 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RRISALGPGGLTRERAGF VRD+HP+H+GR+CPIETPEGPN GLI SL+ +A+ N++GF+ Sbjct: 407 RRISALGPGGLTRERAGFAVRDIHPSHHGRICPIETPEGPNAGLIGSLATHARVNDFGFI 466 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 ETP+ V +G + + + Sbjct: 467 ETPFFPVVNGQIVKDKPA-------------------------------------VYMTA 489 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 D+ D + V+ V + I ++VP V + E Sbjct: 490 DEEDDLRVAPGDVPIDSDNNILG-----------------ESVPVRYRQDFTVTSPKEVD 532 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 S V ++ ++ +++ + M Sbjct: 533 YVAVSPVQIISVATSLIPFLEHDDANRALMGSNMQRQAV--------------------- 571 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P + + + A + V+++ D+ + + E + Sbjct: 572 -PLLRPERALVGTGLEAQAARDSGMVTISRTDGVVSYV--------DANWI-KVTDLEGQ 621 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 + +Q+ + L++ V+ G +V G ++ Sbjct: 622 VHSYELQKY--------------------QRSNQDTCLNQRPFVFEGTKVVAGQVMADGS 661 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 +G ++ + +L + + +D+ L S ++ V+T +EK + Sbjct: 662 ATEG-GEIALGQNVLITYMPWEGYNYEDAILL-----SERLVYEDVYTSIHIEKFEIEAR 715 Query: 948 IEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 ++ ++ +++ +E I+ G + +LV + D+ P ++ Sbjct: 716 QTKLGPEEITREIPNVGEDALRQLDETGIIRVGAWVSSGDILVGKVTPKGESDQPPEEKL 775 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 L ++ + + L E + ++ + + GD+L PG +V+VY+A K Sbjct: 776 LRAIFGEKARDVRDNSLRVPNGEKGRVVDVRVFTREQ----GDELPPGANMVVRVYVAQK 831 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R+IQ GDKMAGRHGNKG+IS+I P+EDMPY +GTP+DIVLNPLGVPSRMN+GQ+ E L Sbjct: 832 RKIQVGDKMAGRHGNKGIISRILPVEDMPYLPDGTPIDIVLNPLGVPSRMNVGQVFEALL 891 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 G A + + + + + A + D Sbjct: 892 GWAGQNLDARFKVTPFDEMYGEEASLETTHGKLQEARNQTGKD----------------- 934 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 + + G+I+LYDGRTGE F++ VTVG YMLKL H Sbjct: 935 ----------------------WVFNPDNPGKIQLYDGRTGEPFDQEVTVGQSYMLKLVH 972 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 LVDDK+HARSTG YSLVTQQPLGGKAQ GGQRFGEMEVWALEA+GAAYTLQE+LTVKSDD Sbjct: 973 LVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDD 1032 Query: 1298 VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + GR + IV G PG PESF VL++E++SL ++I + Sbjct: 1033 MQGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSLCLDIAVH 1075 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 160/344 (46%), Gaps = 32/344 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVFD 81 +P L+ IQ SF+ F+ GL S PI Y+G EL + YRL P + Sbjct: 34 LPDLVEIQRASFRWFL------GEGLVEELESFSPITDYTGKLELHFLGKDYRLKAPKYM 87 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 V E + R TYS + V RL+ E DIKEQEV++G++PLMTD GTF+ING Sbjct: 88 VDEAKRRDSTYSVQMYVPTRLINKE-------TGDIKEQEVFIGDLPLMTDRGTFIINGA 140 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERVIV+Q+ RSPGV++ ++ K G+ Y A +IP RG+WL FE D D ++VRID+ Sbjct: 141 ERVIVNQIVRSPGVYYKAETDKH---GRRTYTANLIPNRGAWLKFETDKNDLVWVRIDKT 197 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEI--------RDNKLQMELVPERLRGETASF 253 RKL A ++L+AL + +I D F+ + + +EL + GE + Sbjct: 198 RKLSAQVLLKALGLSDGEIFDSLRHPEYFQKTIEKEGQFSEEEALLELYRKLRPGEPPTV 257 Query: 254 DIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + + R + R + + +P +V+ I + LI Sbjct: 258 NGGQQLLESRFFDPKRYDLGKVGRHKLNRKL-RLNIPEST---RVLTPQDIVSAIDYLIN 313 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 + D + L + + L N + G E + + Sbjct: 314 LEFDIGNPDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRER 357 >UniRef50_A5D5I2 DNA-directed RNA polymerase subunit beta n=16 Tax=Bacteria RepID=RPOB_PELTS Length = 1224 Score = 852 bits (2201), Expect = 0.0, Method: Composition-based stats. Identities = 410/1221 (33%), Positives = 595/1221 (48%), Gaps = 192/1221 (15%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILD-LFFEKVIFEIRDNKLQMELVPERLRGET 250 + L + + R + Y + K E+++ + M P L E Sbjct: 63 EFLDYTLGEPKYTVEECKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFP--LMTEK 120 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 +F I +V V + R + + K + I + ++ + + Sbjct: 121 GTFIINGAERVIVSQLVRSPGVYFDETIDPSGKKL-YTATIIPNRGAWLEFETDVNDHIF 179 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + + + G+ + + I ETL D T+ ALVEIY+ + Sbjct: 180 VRIDRTRKIPATVLVRALGYGTKAQVAEL-FNEDKNILETLARDNTDSEEEALVEIYKRL 238 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE----------------- 413 RPGEPPT ++A SL +LFF RYDL+ VGR K + L Sbjct: 239 RPGEPPTVDSARSLLTSLFFDPKRYDLANVGRYKIQKKLKHGVLYRYGPNPDGKTVFDPY 298 Query: 414 --------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 E L+K+DII+ ++ L+ + NG+G+VDDIDHLGNRR+RSVGE+ +NQFR Sbjct: 299 LKKEVPQKREFIRELTKEDIIETIRYLLKLMNGEGQVDDIDHLGNRRLRSVGELLQNQFR 358 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 +GL R+ER V+ER+++ D+D + PQ +IN +P+ AA+KEFFGSSQLSQFMDQ NPL+E+T Sbjct: 359 IGLSRMERVVRERMTIQDVDVITPQVLINIRPVVAAIKEFFGSSQLSQFMDQTNPLAELT 418 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 HKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ NE+G Sbjct: 419 HKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARINEFG 478 Query: 586 FLETPYRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 F+ETPYRKV VTDEI YL+A EE YVIAQAN+ LDEEG F+E Sbjct: 479 FIETPYRKVDKENRRVTDEIVYLTADEEEGYVIAQANAPLDEEGRFIE------------ 526 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 + + ++ + + Sbjct: 527 --------------------------PRVNARSPEIVVVPADRVDYMDV----------- 549 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 S + ++ +++ + M Sbjct: 550 --------SPKQVFSIATALIPFLEHDDANRALMGANMQRQAVP---------------L 586 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 Q P V G E ++ V +++++ Sbjct: 587 LKAQAPLVGTGI-----------------EYKAARDSGV-------------VVIAKESG 616 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 ++ T+ HI+ G + + + +++ IV G V G + Sbjct: 617 TVEKVTSTHIEI------RNDRGYLDRYKLLKFTRSNQGTCVNQKPIVKKGERVEAGQV- 669 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 + +L +L A + + +D+ L + FT +E+ + Sbjct: 670 IADGPSTDYGELALGRNVLVAFMPWEGYNYEDAILVSEKT-----VKEDYFTSIHIEEYE 724 Query: 944 RALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 ++ ++ +D+ ++ I+ G R +LV + + Sbjct: 725 CDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDILVGKVTPKGETELTA 784 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 +R L ++ ++ + L + E + K+ ++ GD+L PGV ++V+VY Sbjct: 785 EERLLRAIFGEKAREVRDTSLRVPHGESGKVVDVKVFSRD----NGDELPPGVNQLVRVY 840 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 +A KR+I GDKMAGRHGNKGVI++I P EDMP+ +GTP++IVLNPLGVPSRMNIGQ+L Sbjct: 841 IAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTPIEIVLNPLGVPSRMNIGQVL 900 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV---- 1169 E HLG AAK +G ++ + + E ++ A + +R ++ + ++EE+ Sbjct: 901 EAHLGWAAKVLGYYVSTPVFNGASEESIFEALKEAAFKESGLRSFMEKAGLNEEELIGAV 960 Query: 1170 --------------MRLAENLRKGMPIATPVFD--------------GAKEAEIKELLKL 1201 + G I + G + EI +K Sbjct: 961 ETAEKRAGSREALIKEVEGAESSGETIMAAIERTGLTAGMVNRLEEAGMTKKEILGAMKK 1020 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 SG++ LYDGRTGE F+ P+TVGY+YMLKL HLVDDK+HARSTG YSLVTQQPLGG Sbjct: 1021 LLFARSGKMTLYDGRTGEPFDSPITVGYVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGG 1080 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE 1321 KAQFGGQRFGEMEVWALEAYGAAYTLQE+LTVKSDDV GR K Y+ IV G + EPG+PE Sbjct: 1081 KAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPE 1140 Query: 1322 SFNVLLKEIRSLGINIELEDE 1342 SF VL+KE++SLG+++++ E Sbjct: 1141 SFKVLIKELQSLGLDVKVLSE 1161 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 129/372 (34%), Positives = 196/372 (52%), Gaps = 34/372 (9%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M Y R+R +FG+ +VLD+P L+ +Q +S++ F+E+ GL F+ + PIQ Sbjct: 1 MAYPEKVGARVRYNFGRLREVLDLPNLIEVQRNSYKWFLEE------GLREVFQDISPIQ 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 55 DFTGNLVLEFLDYTLGEPKYTVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 107 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +V+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+FD SGK LY A IIP R Sbjct: 108 DVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFDETID---PSGKKLYTATIIPNR 164 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEI------- 232 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y T Q+ +LF E Sbjct: 165 GAWLEFETDVNDHIFVRIDRTRKIPATVLVRALGYGTKAQVAELFNEDKNILETLARDNT 224 Query: 233 -RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + + +E+ GE + D + ++ + R A R + +K + Sbjct: 225 DSEEEALVEIYKRLRPGEPPTVDSARSLLTSLFFDPKRYDLANVGRYKIQKKLKHGVLYR 284 Query: 290 E--YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS-----GHKRIETLFTNDLD 342 GK V Y+ + + D++ + G +++ + Sbjct: 285 YGPNPDGKTVFDPYLKKEVPQKREFIRELTKEDIIETIRYLLKLMNGEGQVDDIDHLGNR 344 Query: 343 HGPYISETLRVD 354 + E L+ Sbjct: 345 RLRSVGELLQNQ 356 >UniRef50_Q2JFI5 DNA-directed RNA polymerase subunit beta n=66 Tax=Bacteria RepID=RPOB_FRASC Length = 1141 Score = 845 bits (2182), Expect = 0.0, Method: Composition-based stats. Identities = 396/1167 (33%), Positives = 574/1167 (49%), Gaps = 175/1167 (14%) Query: 197 RIDRRRKLPATIILRALNYTTEQIL-DLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 R + + + + ++ + F EI+ + M P L +F I Sbjct: 87 RFEPPKYSVEECKDKDMTFSAPLFVTAEFTNNNTGEIKSQTVFMGDFP--LMTPKGTFVI 144 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 +V V + R + + + I + ++ + + + Sbjct: 145 NGTERVVVSQLVRSPGVYFERSLDKASDKDLYSCKVIPSRGAWLEFEIDKRDTVGVRIDR 204 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + + L G L P + TL D T + AL++IYR +RPGEP Sbjct: 205 KRRQSVTVLLKALGWDEARILERFG--DFPSMRITLEKDHTAGQDDALLDIYRKLRPGEP 262 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 PTRE+A++L ENLFF+ RYDL+ VGR K N+ L G+L+++DI+ ++ ++ + Sbjct: 263 PTRESAQTLLENLFFNPKRYDLAKVGRYKVNKKLSLGVAHDVGVLTENDIVRTIEYVVKL 322 Query: 436 RNG----KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD 491 G + EVDDIDH GNRRIR+VGE+ +NQ R+GL R+ER V+ER++ D++ + PQ Sbjct: 323 HAGADPAEYEVDDIDHFGNRRIRTVGELIQNQVRLGLARMERVVRERMTTQDVEAITPQT 382 Query: 492 MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVH 551 +IN +P+ A++KEFFG+SQLSQFMDQ NPL+ +THKRR++ALGPGGL+RERAGFEVRDVH Sbjct: 383 LINIRPVVASIKEFFGTSQLSQFMDQTNPLAGLTHKRRLNALGPGGLSRERAGFEVRDVH 442 Query: 552 PTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE 611 P+HYGR+CPIETPEGPNIGLI SLS +A+ N +GF+ETPYRKV +G VT +I +L+A EE Sbjct: 443 PSHYGRMCPIETPEGPNIGLIGSLSTFARVNPFGFIETPYRKVENGRVTGQIDWLTADEE 502 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTC-RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 +V AQAN+ L +G F ED V R GE IP Sbjct: 503 DRHVKAQANTPLRPDGSFAEDRVLVRRKGGEV-----------------------EFIPP 539 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 E S V+ ++ +++ Sbjct: 540 D---------------------------------EVDYMDVSPRQMVSVATAMIPFLEHD 566 Query: 731 RIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTD 790 + M ++ P V G D Sbjct: 567 DANRALMGSNMQRQSVP---------------LLRSEAPLVGTGMEARAAKDAGD----- 606 Query: 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI 850 ++V + + + +I G Sbjct: 607 -------------------------VVVCAQAGVVEDLSADYITV------MHDDGTRRT 635 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 + +++ IV G V G + + ++ + LL A + Sbjct: 636 YRLAKFRRSNQGTCINQKPIVNEGDRVGAGQV-IADGPCTDNGEMALGKNLLVAFMPWEG 694 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS--------- 961 + +D+ + ++ V + +E+ + ++ ++ +D+ Sbjct: 695 HNYEDAIILSQ-----RLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVAEEVLAD 749 Query: 962 -EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 +E I+ G VLV + + P +R L ++ ++ + L + E Sbjct: 750 LDERGIIRIGAEVSPGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE 809 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 ++ ++ GD+L PGV ++V+VY+A KR+I GDK+AGRHGNKGVI+KI Sbjct: 810 SGKVIGVRVFSRED----GDELPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVIAKIL 865 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 P EDMP+ E+GTPVD+VLNP GVP RMNIGQILETHLG AK G ++++ + +E + Sbjct: 866 PAEDMPFLEDGTPVDVVLNPHGVPRRMNIGQILETHLGWVAKT-GWQVDSGTEDWKERLR 924 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 A+ G +ATPVFDGA+E EI LL Sbjct: 925 -----------------------------GIGADAASAGTNVATPVFDGAREEEITGLLD 955 Query: 1201 LGDLPT--------SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 SG+ +L+DGRTGE + PV VGY+Y+LKL HLVDDK+HARSTG YS Sbjct: 956 STLPNRDGIQLIGSSGKAKLFDGRTGEPYPYPVAVGYIYILKLLHLVDDKIHARSTGPYS 1015 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGN 1312 ++TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE+LT+KSDDV GR K+Y+ IV G Sbjct: 1016 MITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVVGRVKVYEAIVKGE 1075 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIEL 1339 + EPG+PESF VL+KE++SL +N+E+ Sbjct: 1076 NIPEPGIPESFKVLIKEMQSLCLNVEV 1102 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 108/375 (28%), Positives = 170/375 (45%), Gaps = 41/375 (10%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFI----------------EQDPEGQYGLEAAFRSVFP 58 F K + L+VP LL++Q SF I D GLE F+ + P Sbjct: 12 FAKIIEPLEVPDLLALQTQSFDWLIGSDAWAERVQEAIDSGRDDVPITSGLEEVFKEISP 71 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I+ +SG+ L + +R P + V+EC+ + +T+SAPL V +IK Sbjct: 72 IEDFSGSMSLSFRDHRFEPPKYSVEECKDKDMTFSAPLFVTAEFTNNN-------TGEIK 124 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 Q V+MG+ PLMT GTFVINGTERV+VSQL RSPGV+F+ K +S K LY+ ++IP Sbjct: 125 SQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERSLDK--ASDKDLYSCKVIP 182 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK-- 236 RG+WL+FE D +D + VRIDR+R+ T++L+AL + +IL+ F + I K Sbjct: 183 SRGAWLEFEIDKRDTVGVRIDRKRRQSVTVLLKALGWDEARILERFGDFPSMRITLEKDH 242 Query: 237 ------LQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 +++ + GE + + ++ R A+ R + L Sbjct: 243 TAGQDDALLDIYRKLRPGEPPTRESAQTLLENLFFNPKRYDLAKVGRYKVNKKLSLGVA- 301 Query: 289 VEYIAGKVVAKDYIDESTGELICAAN---MELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + G + D + + A E +D + + + L N + G Sbjct: 302 --HDVGVLTENDIVRTIEYVVKLHAGADPAEYEVDDIDHFGNRRIRTVGELIQNQVRLGL 359 Query: 346 YISETLRVDPTNDRL 360 E + + + Sbjct: 360 ARMERVVRERMTTQD 374 >UniRef50_C5NY37 DNA-directed RNA polymerase n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY37_9BACL Length = 1267 Score = 842 bits (2174), Expect = 0.0, Method: Composition-based stats. Identities = 441/1381 (31%), Positives = 664/1381 (48%), Gaps = 248/1381 (17%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M K R R+ + + +V+D+P L+ IQ S+ KF+E GL+ F+ V PI+ Sbjct: 1 MQKVKFGKHRQRRSYARISEVIDLPDLIEIQTLSYDKFLE------TGLKDVFKDVSPIE 54 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 + L+++ Y+LG P +DV E + R TYSAPLRV++RL+ ER+ +IKEQ Sbjct: 55 GNNDKLSLEFIDYKLGTPKYDVDESKERDATYSAPLRVRVRLINKERD-------EIKEQ 107 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MGE+PLMT+ GTF+ING ERVIVSQL RSP V+F D + Y +IP R Sbjct: 108 EVFMGELPLMTETGTFIINGAERVIVSQLVRSPSVYFTEDDKLKVKNIPNAYKTTVIPNR 167 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEK--------VIFE 231 G+WL+FE D K ++ RIDR RK+P T ++RAL + + E I+ LF E Sbjct: 168 GAWLEFEKDIKGLVYARIDRTRKIPLTTLIRALGFESDESIIKLFGEDTELLNTLEKDEN 227 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPV 289 + + + GE A+ + + + R A+ R + + Sbjct: 228 LDTGTALKVIYDKLRPGEPANVETAKATLHGRFFDPRRYDLAKVGRYKLNNKL----HVG 283 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 E + +++ + +D TGE++ +L+ +++ + + + + + Sbjct: 284 ERLENQILVEPIVDTETGEILVEKGTKLTREIIDGIYEELGTTANVVEFDMNESL----- 338 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 D ++ L +I ++ G YD+ + + + Sbjct: 339 ----DGSDSLKLQLFKIVNQVKVGND-------------------YDIDELTDDQVLHVI 375 Query: 410 LREEI-EGSGILSKDDIIDVMKKLIDIRNGKG-----------EVDDIDHLGNRRIRSVG 457 + L+ DI+ + + + + VDDIDHLGNRR+R +G Sbjct: 376 GNGAPNKDVLTLTIADIVASINYYLLLIRTRRNNDGFEFELIGRVDDIDHLGNRRLRCIG 435 Query: 458 EMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 E+ +NQ RVG+ R+ER V+ER+S+ D + + PQ +IN +P++A +KEFFGSSQLSQFMDQ Sbjct: 436 ELLQNQIRVGISRMERVVRERMSIQDTNEITPQQLINVRPVTAIIKEFFGSSQLSQFMDQ 495 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 NPLSE+THKRR+SALGPGGLTRERAG EVRDVH +HYGR+CPIETPEGPNIGLINSLS Sbjct: 496 VNPLSELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSS 555 Query: 578 YAQTNEYGFLETPYRKVTDG-----VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVED 632 +A+ NE+GF+ TPYRKV VT+ + YL+A +E YV+AQ+ +N+DE+G+FV++ Sbjct: 556 FARINEFGFIMTPYRKVEFDGEGRPYVTENVQYLTADQEDKYVVAQSTANVDEKGYFVDE 615 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 V CR +G++++ R +M Sbjct: 616 EVVCRFRGDNTVKP-------------------------------REMMN---------- 634 Query: 693 LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN 752 S V+ + +++ + M + I Sbjct: 635 ---------------FMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMITE 679 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP-WNGYN 811 P V G E ++ A + + G Sbjct: 680 ---------------APFVGTG-----------------MEHLAARDSGAAVIAKYPG-- 705 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 +V+ I ++ + + G + V + ++ IV Sbjct: 706 ----------IVEYVDGAKIKVRRIETLEGKEIKGDLDTYVIHKFVRSNHSTAYNQKPIV 755 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 +G V DIL + +L + L+ A + +D+ + S ++ Sbjct: 756 KVGDRVEPKDIL-ADGPSMDKGELALGKNLVVAFVNWDGYNYEDAVIM-----SERLVKD 809 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVA 981 V+T VE+ + ++ ++ +++ + I+ G + +LV Sbjct: 810 DVYTSIHVEEYETDARDTKLGPEEITREIPNVGENALRNLDARGIIRIGAEVKDGDILVG 869 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 ++ P ++ L + K+ + L + + K+ + G + Sbjct: 870 KVTPKGLTEQTPEEKLLYAIFGAKSKEVRDTSLRVPHGADGVVADVKIFKRED----GAE 925 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 L GV ++V+V++ KR+I+ GDKMAGRHGNKGVIS I P EDMPY +GTPVD++LNPL Sbjct: 926 LPNGVNELVRVFIVQKRKIRVGDKMAGRHGNKGVISNILPEEDMPYLPDGTPVDVMLNPL 985 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 GV + IG + Sbjct: 986 GV---------------PSRMNIGQVL--------------------------------- 997 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 E+ + G+ +ATPVFDGA + ++ + + + LYDGRTGE F Sbjct: 998 ------ELHLGMAAKQLGIHVATPVFDGATDEDVWSTVAEAGMAKDAKTVLYDGRTGEPF 1051 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + V+VG MYM+KL H+VDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAY Sbjct: 1052 DSRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1111 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 GAAYTLQE+LT KSDD NGR K Y+ IV G + PG+PESF VL+KE+++LG++ + D Sbjct: 1112 GAAYTLQEILTYKSDDTNGRVKTYEAIVKGENIPRPGVPESFRVLMKELQALGMDFRVMD 1171 Query: 1342 E 1342 Sbjct: 1172 N 1172 >UniRef50_A3FMP8 DNA-directed RNA polymerase (Fragment) n=16 Tax=Veillonella RepID=A3FMP8_9FIRM Length = 1124 Score = 834 bits (2155), Expect = 0.0, Method: Composition-based stats. Identities = 490/1176 (41%), Positives = 665/1176 (56%), Gaps = 84/1176 (7%) Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 D GTF+ING ERVIVSQL RSPGV++D + + G LY + +IP RG+W++ E D Sbjct: 1 DTGTFIINGAERVIVSQLVRSPGVYYDKEID---TMGNRLYASTVIPNRGAWIELETDAN 57 Query: 192 DNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRG-E 249 + + VRIDR RK+PATI++RAL + T E IL+LF+ + E + LR E Sbjct: 58 EVVSVRIDRNRKIPATILVRALGWDTNESILELFWNGQVDEDGNPIY----DERLLRTLE 113 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 + + V + K R + ++ + V + +++ G Sbjct: 114 KDTTESSEEALVEIYKKLRPGEPPTVESARNLFDNLFFDPRRYDFARVGRYKVNKKLGWK 173 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 L+ + + + G I A I Sbjct: 174 QRMFGQLLAQPIF-----------------NPETGEVIL------------DAGTHIGEE 204 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 + A F + D G ++++D+I + Sbjct: 205 EIEIVEKSGVFAGEGFAEFYIDID-------GVHAKVICNNCNLPYEFRTVTREDMIANI 257 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP 489 L+++ +G G DDIDHLGNRR+R VGE+ +NQFR+GL R+ER V+ER+++ + D + P Sbjct: 258 SYLLNLMDGVGHTDDIDHLGNRRLRCVGELLQNQFRIGLTRMERVVRERMTVQESDMITP 317 Query: 490 QDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 Q +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+THKRR+SALGPGGL+RERAGFEVRD Sbjct: 318 QALINIRPVVAAVKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLSRERAGFEVRD 377 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT--------- 600 VH +HYGR+CPIETPEGPNIGLINSLS YA+ NE+GF+E PYRKV T Sbjct: 378 VHHSHYGRMCPIETPEGPNIGLINSLSNYAKVNEFGFIEAPYRKVEKIYGTGDEADKIVK 437 Query: 601 ----DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 D + Y++A EE VIAQANS LDEEG FV D + CRS + + D+VDYMDVS Sbjct: 438 VRVTDTVAYMTADEEEGMVIAQANSVLDEEGCFVSDHIACRSGHDVLEVTPDKVDYMDVS 497 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 ++VVS+G ++IPFLE+DDANRALMGANMQRQAVP LRA PLVGTGME A DSGV Sbjct: 498 PKEVVSIGTAMIPFLENDDANRALMGANMQRQAVPLLRAQAPLVGTGMEYTAATDSGVCI 557 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 +AK G V +I + M +D+Y + K+ RSNQ+TC NQ P V G+ Sbjct: 558 LAKAAGTVVRCWGDQIHV------MRDDNGRVDVYKMNKFLRSNQSTCFNQKPIVHRGDH 611 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 V G VLADGP+TD GELALG N+ VAFMPW GYN+ED+IL+SE + +ED +T+IHI+E Sbjct: 612 VVAGQVLADGPATDGGELALGFNILVAFMPWEGYNYEDAILLSEDLCKEDIYTSIHIEEY 671 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 C +RDTKLG EEIT ++PN G+ +L LD GI+ IGAEV GDILVGK TPKGET+LT Sbjct: 672 ECDARDTKLGAEEITRELPNTGDDSLKNLDADGIICIGAEVKPGDILVGKATPKGETELT 731 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKRALEIEEMQLKQ 955 PEE+LLRAIFG+K +V+D+SLRVP+G SG ++DV+VFTR +G E ++ + + Q Sbjct: 732 PEERLLRAIFGDKEREVRDTSLRVPHGESGKIVDVKVFTRENGDELQPGVNKLVRVYIAQ 791 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 +K + G + V+ + D P L L + N + L Sbjct: 792 KRKIHEGDKMAGRHGNKGVVSRVMRREDMPF-LPDGTPVQIVLN-PLGVPSRMNIGQVLE 849 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDD-------LAPGVLKIVKVYLA-VKRRIQPGDKMA 1067 K++ +I Q + + ++ +Y + + Q + Sbjct: 850 THLGFAVQGLGMKIKDTDMQIKQVLERAKTDASYWDNIEELKGLYARLDELKAQIAQDVT 909 Query: 1068 GRH--GNKGVISKINPIEDMPYDENGTPVDIV-----LNPLGVPSRMNIGQILETH-LGM 1119 H ++ + N I D+ E + + L R ++ + +E Sbjct: 910 VAHLDVDEEITQLTNDIMDLVKVETERQLSALGGYTRYRELKDIERSHMAKQIECFDTDE 969 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 + + ++ L + Q ++ E I A + +++R+ ++ D E + + G Sbjct: 970 SVPDMDPELEKELGRLQSTVRILETIDEAREKRSEIRKSLEA-IGYDYEQYGMPKPDVAG 1028 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 + IATPVFDGA E ++ E L+L G+ LYDGRTGE + VTVGY+YMLKL+HLV Sbjct: 1029 IHIATPVFDGASEVDVFEALQLAGKSEDGKTVLYDGRTGEPMDNRVTVGYVYMLKLHHLV 1088 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 DDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEV Sbjct: 1089 DDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV 1124 >UniRef50_C7M2W5 DNA-directed RNA polymerase n=3 Tax=Actinobacteria (class) RepID=C7M2W5_ACIFD Length = 1181 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 395/1190 (33%), Positives = 574/1190 (48%), Gaps = 150/1190 (12%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILD-LFFEKVIFEIRDNKLQMELV 242 L+ E+DP D + + + + Y + F + +EI+ + M Sbjct: 60 LELEYDPSDPDLAPVPKFS--AEECREKDMTYAGPIFVRARFLNRQTYEIKQQIVFMGDF 117 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 P L + +F I +V V + R + V + ++ Sbjct: 118 P--LMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQHT---VVTATINPYRGEWLEFD 172 Query: 303 DESTGELICAAN----MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 E+ A + L L L +G L + + D + Sbjct: 173 VEARPGRDINAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQWAKEDHSQT 232 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI---- 414 R AL+E++R +RPGEP EAA FE FF RYDL+ VGR K ++ L E Sbjct: 233 RDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRLSAEIERVEE 292 Query: 415 ----------EGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGEMAEN 462 E +LS+ DII ++ + G+ DD DH NRR+RSVGE+ +N Sbjct: 293 ILGHPLDRTSESPLVLSRADIIATASYMLHLVAGEPGYRFDDQDHFSNRRVRSVGELIQN 352 Query: 463 QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS 522 Q ++GL R+ER V+ER++ D++ + PQ +IN +P+ AA+KEFF +SQLSQFMDQNNPLS Sbjct: 353 QLKIGLSRLERLVRERMTTQDVEAITPQSLINIRPVVAAIKEFFSTSQLSQFMDQNNPLS 412 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 + HKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ YA+ N Sbjct: 413 GLAHKRRLSALGPGGLSRERAGFEVRDVHSSHYGRMCPIETPEGPNIGLIGALASYARLN 472 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS--KG 640 YGF+ETPYR+V DG VTDE+ YL+A EE +YVIAQAN+ LD EG FVE V R +G Sbjct: 473 RYGFIETPYRRVVDGKVTDEVVYLTADEEEDYVIAQANAKLDAEGRFVEPKVLVRRGPQG 532 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 V Y S + + Sbjct: 533 AVVRVGAMAVSYGATSEVE----------------------------------------L 552 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 T E + S V+ ++ +V+ + M Sbjct: 553 ATPDEVDLMDVSPAQVVSVSTSLIPFVEHDDANRALMGANMQKQAVP------------- 599 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDL-GELALGQNMRVAFMPWNGYNFEDSILVS 819 + + P V G G D + G ++ +A ++DS+ Sbjct: 600 --LLVPEAPFVGTGVEARAGLDAGDVLVAEGPGVVSEVTGASIAVT------YDDSVT-- 649 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 + + ++ V G V Sbjct: 650 --------------------DDAGRPLGTRRYWLTKFQRSNQNTCWNQRPTVATGDRVEL 689 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 GD+L +L + LL A + + +D+ + +S ++ V + + Sbjct: 690 GDVLADGPATMH-GELALGKNLLVAFMPWEGYNFEDAII-----ISERLVRDDVLSSLHI 743 Query: 940 EKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKL 989 E+ + ++ ++ +D+ +E I+ G +LV + Sbjct: 744 EEFETDARDTKLGAEEITRDIPNLSEEALADLDERGIVRIGAEVGPGDILVGKVTPKGET 803 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 + P +R L ++ ++ + L + E + K+ + +L PGV ++ Sbjct: 804 ELTPEERLLRAIFGEKSREVRDTSLRVPHGEYGKVIDVKVFTREDAT----ELPPGVNEL 859 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V+VY+A R+IQ GDK+AGRHGNKGVIS+I PIEDMP E+GTPVDI+LNPLGVPSRMNI Sbjct: 860 VRVYVAQHRKIQVGDKLAGRHGNKGVISRILPIEDMPRLEDGTPVDIILNPLGVPSRMNI 919 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 GQ+LE HLG AA+ + I ++ ++ + D + + + E Sbjct: 920 GQVLEAHLGYAARWGWEPIGEGAREHRKTRPVTVP------ARWVASPAFDGAHWDESEE 973 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 +++ + P ++ E L + G+ LY+GRTGE+++ PV VGY Sbjct: 974 AGDLPTIKELLERLNP------QSRDGERL----VQPDGKAVLYNGRTGERYDNPVMVGY 1023 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 +YMLKL H+VDDK+HARSTG YS++TQQPLGGKAQFGGQRFGEMEVWALEAYGAAY LQE Sbjct: 1024 VYMLKLAHMVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQE 1083 Query: 1290 MLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 +LT+KSDDV GR K+Y+ IV G++ EPG+PESF VL+KE++SL +N+E+ Sbjct: 1084 LLTIKSDDVVGRVKVYEAIVKGDNIPEPGIPESFKVLIKEMQSLCLNVEV 1133 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 147/345 (42%), Gaps = 42/345 (12%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 + R F VL +P L+++Q DSF+ F+ GL AFR + PI+ YS Sbjct: 2 ITRHRPPERFSFASARNVLPLPDLIAVQRDSFRWFL------NEGLAEAFRDISPIEDYS 55 Query: 64 GNSELQYV----SYRLGE-PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 G L+ L P F +EC+ + +TY+ P+ V+ R +IK Sbjct: 56 GQLALELEYDPSDPDLAPVPKFSAEECREKDMTYAGPIFVRARF-------LNRQTYEIK 108 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 +Q V+MG+ PLMTD GTF+INGTERV+VSQL RSPGV F + + + A I P Sbjct: 109 QQIVFMGDFPLMTDRGTFIINGTERVVVSQLVRSPGVLFQPGRDQH-----TVVTATINP 163 Query: 179 YRGSWLDFEFDPKDNLFV----RIDRRRKLPATIILRALNYTTEQILDLF---------- 224 YRG WL+F+ + + + R+ R+R+L +LRA L+ Sbjct: 164 YRGEWLEFDVEARPGRDINAGGRVARKRRLSLFTVLRAAGLDDPADLERLVAHFDFLEPQ 223 Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDV 282 + K + ME+ GE + + + + R R R + Sbjct: 224 WAKEDHSQTRDDALMEVFRRVRPGEPINVEAARLYFETAFFQSRRYDLTRVGRYKIDKRL 283 Query: 283 KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 VE I G + + + ++ A++ + + L Sbjct: 284 SAEIERVEEILGHPLDRT---SESPLVLSRADIIATASYMLHLVA 325 >UniRef50_B1MVW8 DNA-directed RNA polymerase subunit beta n=42 Tax=Bacteria RepID=RPOB_LEUCK Length = 1204 Score = 830 bits (2143), Expect = 0.0, Method: Composition-based stats. Identities = 433/1364 (31%), Positives = 637/1364 (46%), Gaps = 257/1364 (18%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 K R R+ + +VLDVP L+ IQ S+Q F+++ G++ F + PI + G Sbjct: 10 KHRTRRSYASIKEVLDVPNLIEIQTASYQWFLDE------GIKEMFGDIMPIDDFQGTLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+YV Y+L EP +++ E + YSAPL V LRL +E +IK Q+V+ GE Sbjct: 64 LEYVDYQLMEPKYNIDEAREHDANYSAPLHVTLRLTNHE-------TGEIKSQDVFFGEF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT+ GTF+ING ERVIVSQL RSPG++++ + K +G+ Y +IP RG+WL++E Sbjct: 117 PLMTEQGTFIINGAERVIVSQLVRSPGIYYNQENDK---NGRPRYGTTVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLF---FEKVIFEIRD--------- 234 D K VRIDR RKL T ++RAL + + I+D+F ++ + + Sbjct: 174 TDAKGIANVRIDRTRKLLMTELVRALGFGSDSDIIDIFSDQYDALNMTLEKDVHKDMSDS 233 Query: 235 --NKLQMELVPERLRGETASFDIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPVE 290 + ++ GE + D V + + R A R + Sbjct: 234 RVEEALKDVYERLRPGEPKTADSSRALLVARFFDPKRYDLASVGRYKINKKLS----LKT 289 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 + + +A+ D +GE+I + +++KLS + T + E Sbjct: 290 RLLNQTLAETLADPDSGEVIAEKGTLVDKTVMSKLSPFLDREDFKTTTYTPSGDAVLEEP 349 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + + ++ P E L N Sbjct: 350 VT--------------LQKIKIESPENPEKTLLLIGNG---------------------- 373 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 E + DI+ M ++++ G G VDDIDHLGNRRIRSVGE+ +NQFR+GL R Sbjct: 374 -HIDENDRTVRPADILAGMNYFLNLQEGIGNVDDIDHLGNRRIRSVGELLQNQFRIGLTR 432 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRI 530 +ER V+ER+S+ D +T+ PQ +IN +P+ AAVKEFFGSSQLSQFMDQ NPL E+ HKRR+ Sbjct: 433 MERVVRERMSIQDANTVTPQQLINIRPVVAAVKEFFGSSQLSQFMDQTNPLGEMNHKRRL 492 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 SALGPGGLTR+RAG EVRDVH THYGR+ PIETPEGPNIGLINSL+ Y + N+YGF+ETP Sbjct: 493 SALGPGGLTRDRAGVEVRDVHYTHYGRIDPIETPEGPNIGLINSLATYGRINKYGFIETP 552 Query: 591 YRKVTDG--VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRD 648 YR+V +VTD+I YL+A EE NY++AQANS L+ Sbjct: 553 YRRVDWTTHMVTDKIDYLTADEEDNYIVAQANSPLN------------------------ 588 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 S + + + R Sbjct: 589 --------------DDGSFVHDTVMARFGEENIETPIDRI------------------DY 616 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 S V+ + +++ + M Sbjct: 617 MDVSPKQVVSVGTAAIPFLENDDSNRALMGANMQRQAVP---------------LLDPHA 661 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 P V G E + VA ++ Sbjct: 662 PLVGTGI-----------------EYKAAHDSGVA------------------MISRAAG 686 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 ++ R G + + ++ IV+ G V ++L Sbjct: 687 VVEYVDGRQIRVRRED-GQLDTYELMKFRRSNGGKNYNQKPIVHEGEHVEADEVL-ADGP 744 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 + +L + L A + + +D+ + + ++ V+T +E+ Sbjct: 745 SMEKGELALGQNPLIAFMTWQGYNFEDAIVL-----NERLVREDVYTSIHIEEYDSEARD 799 Query: 949 EEMQLKQAKKDLS----EELQILEAGLFSRIR------AVLVAGGVEAEKLDKLPRDRWL 998 ++ ++ +++ ++L+ L+A R+ +LV + +R L Sbjct: 800 TKLGPEEMTREIPNTGEDQLKDLDADGIIRVGAEVHDGDILVGKVTPKGVTELSAEERLL 859 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 ++ ++ + L + ++ GD+LAPGV +V+VY+A KR Sbjct: 860 HAIFGEKAREVRDTSLRVPHGGGGVVQNVRIYTPE----NGDELAPGVNMMVRVYIAQKR 915 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLG 1118 +IQ GDKMAGRHGNKG +S + P EDMPY +GTP+DI+L+P+GV Sbjct: 916 KIQVGDKMAGRHGNKGTVSVVVPEEDMPYMPDGTPIDILLSPMGV--------------- 960 Query: 1119 MAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 + IG + E+ + Sbjct: 961 PSRMNIGQVL---------------------------------------ELHLGFAAKKL 981 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 G+ +A+PVFDGA + EI+ L+ LP G+ +YDGRTGE F++ V VG M+ +KL H+ Sbjct: 982 GIHVASPVFDGASDDEIEAALREAGLPQDGKSVVYDGRTGEAFDKRVGVGVMHYMKLAHM 1041 Query: 1239 VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1298 VDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LT KSDDV Sbjct: 1042 VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDV 1101 Query: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 GR K+Y++I+ G PG+PESF VL+KE+++LG+++++ D Sbjct: 1102 AGRVKVYESIIKGEPIPRPGVPESFRVLVKELQALGLDMQVLDN 1145 >UniRef50_Q8KTP8 DNA-directed RNA polymerase n=1 Tax=Candidatus Tremblaya princeps RepID=Q8KTP8_TREPR Length = 1290 Score = 809 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 417/1332 (31%), Positives = 645/1332 (48%), Gaps = 85/1332 (6%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQ----YGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP 78 P LL +Q +F + + YGL+ S+FP+ S+ G + ++ V Y +G+P Sbjct: 20 PYPDLLGVQRSAFNRLTQHSTHPSARNPYGLQRLLFSMFPMMSHDGAALIELVKYTIGKP 79 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYEREAP-EGTVKDIKEQEVYMGEIPLMTDNGTFV 137 EC G+TYSAPL + L++ V+ + +VY+G++P+MT G+F+ Sbjct: 80 CSTDAECLRSGLTYSAPLSLTLKITSRTPSNDGTWHVRYSRSHQVYLGDMPMMTRKGSFI 139 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 + GTER ++ +R+ G+ F + + + RI+P+RG+WL+ + R Sbjct: 140 VRGTERTLLVLQNRAYGLGFVPYLTYSMYDTPTVCSLRIVPHRGTWLELSI-QDGAVLFR 198 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEA 257 + +PATI+L+ +T+ I + + I + + + + FD Sbjct: 199 FNAGVFMPATILLKGFGASTDAIAGMLTPRAGIAISPGGASIAIDLSDIAFDVQHFDT-- 256 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI--DESTGELICAANM 315 R AR R+L K L P+ VV K + D S G + Sbjct: 257 ---------RLGHARLTRRLAKSRGSLEGRPLHIEDADVVNKFELASDASLGGRTVGSGT 307 Query: 316 ELSLDLLAKLSQSGHKRIETLFT-NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 LS +++ + + + + YI+ TLR+D T D A I + Sbjct: 308 LLSQRVISMARADRESYLAVVNRCHHGAYLRYIARTLRMDRTVDPHDARACIAGHIGIMR 367 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 +A SLF+ + + Y L+ GR + N + R +G L DI +K LI+ Sbjct: 368 HLDPASAHSLFQGIMENARAYCLTPCGRSQLNARIGRHFSQGGDTLDARDIALSLKLLIN 427 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 DD+D + NR+ R + + R + ++R ++ + ++ Sbjct: 428 ATRRNVRPDDVDDMSNRKARDACDALCDALRPAFLGLKRRLRSH-TANSRPGEAIAILLG 486 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 ++ + +S+L+Q +DQ NPL+E+THKRR++ + RA RDVH TH Sbjct: 487 LHAVTHQAYDELTNSRLAQPLDQTNPLAEVTHKRRVAIIAGSDSGPRRAPLGARDVHATH 546 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 YGR+CP+ETPEG NIGLI SL+ A+ + G + PY Y+S EE Sbjct: 547 YGRLCPVETPEGQNIGLIASLAARARIDAQGTILAPYVVTRRNATRAAARYISPQEE--- 603 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 + ++ H + R ++ +V +D + + +S + IPFLEH+ Sbjct: 604 -VGAMSAPSAIVPHSRRRTIMARIGHGVAMVHPSEVILVDGANEMALSAATATIPFLEHN 662 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DA RALMG+NMQRQAVP KP V TGME+AVA + V A+ G V YVD I I Sbjct: 663 DACRALMGSNMQRQAVPCCYPRKPRVHTGMEQAVAQHAMVAIRARYAGRVAYVDPLHIAI 722 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + + Y L + R+NQ T + P V G V+ GDV+ADGP+++ G L Sbjct: 723 VP----ICENQGHACTYRLARNVRTNQGTQADHRPTVIPGSYVQAGDVIADGPASEGGVL 778 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 ALG+++ VAFMPW GYN+EDS+ VSE +++ +T++H+ E++ ++ + Sbjct: 779 ALGRDVLVAFMPWEGYNYEDSVAVSEALLRNGAYTSVHLDEVSVDMDGDDGCGTVLSRCV 838 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 P + ++ +LDE GIV +G+ V GDI+VG+++P+ LLR + Sbjct: 839 PGITQSQRDRLDERGIVRVGSMVYPGDIIVGRISPRHAGIAPKGNSLLRTALATSEQANR 898 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 DSS+R G++GTV+ ++ + + + ++ Sbjct: 899 DSSIRATQGMTGTVVYSRIEPCNQPDVHDDLPGQCAGEQSLLRRIQHGARATYCWASARD 958 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR 1034 + +EQ A Sbjct: 959 PYFWMPRN--------------------GLAAAPYAMEQHASPKA--------------- 983 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 G + +KV +A + +QPGDK++GRHGNKGV+SK+ PIEDMPY +NG V Sbjct: 984 ----GLHPYDKATRTLKVAIASRIDLQPGDKVSGRHGNKGVVSKVVPIEDMPYMKNGRSV 1039 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 D+++NPLGVPSRMN+GQ+LETH+G+A+ L+ + A+ +D Sbjct: 1040 DVIVNPLGVPSRMNVGQLLETHIGLAS--------IALEARSNTAEHLLCSSAYHDAMCH 1091 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK---------LGDLP 1205 D + + R + P FDG EAEI+ + + L Sbjct: 1092 GLMACDGRCYPACSAAGGSPGHRVTLCTLCPAFDGPSEAEIRSMARAAATQGVRFKHGLH 1151 Query: 1206 TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 Q LYDGRTG Q++RPVTVG+MY LKLNHL +K+H+RSTG YSLVT+QPLGGKA+ Sbjct: 1152 RRHQAILYDGRTGTQYDRPVTVGFMYYLKLNHLARNKVHSRSTGPYSLVTEQPLGGKARS 1211 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 GGQR GEMEVWALEA+GAA+TLQEMLT+KSDDV GR +++ +I + G PES + Sbjct: 1212 GGQRVGEMEVWALEAHGAAFTLQEMLTIKSDDVGGRRRVHDHIAQDVRPLSYGTPESIGL 1271 Query: 1326 LLKEIRSLGINI 1337 L++E+RSL +++ Sbjct: 1272 LVRELRSLCVDV 1283 >UniRef50_Q3A9Q7 DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridia RepID=RPOB_CARHZ Length = 1132 Score = 807 bits (2085), Expect = 0.0, Method: Composition-based stats. Identities = 402/1188 (33%), Positives = 581/1188 (48%), Gaps = 212/1188 (17%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILD-LFFEKVIFEIRDNKLQMELVPERLRGET 250 + L + + + R Y+ + K EI++ ++ + P L E Sbjct: 62 EFLDYYLGKPKYSVEECKERDFTYSAPLRVKVRLLNKETGEIKEQEVFLGDFP--LMTEK 119 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 +F +V + + R + + + K + I + ++ + + Sbjct: 120 GTFIFNGAERVVISQMVRSPGVYFSEQVDPNGKKM-YLATIIPNRGAWLEFETDVNDHIY 178 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + L + L G++ + DH I TL D T+ R AL+EIY+ + Sbjct: 179 VRIDRTRKLPVTVLLKALGYESKGRIAEL-FDHDDKIIATLERDNTDSREEALIEIYKKL 237 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE----------------- 413 RPGEPPT E+A++L +++FF RYDL VGR K + L Sbjct: 238 RPGEPPTVESAKTLLDSMFFDPKRYDLGNVGRYKLFKKLNHGVLYRYLEEDGEKEYDKYL 297 Query: 414 -------IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 E L+ +DII ++ L+ + G+G+VDDIDHLGNRR+RSVGE+ +NQFR+ Sbjct: 298 NDYVPVKREFIRELTNEDIIYTIRYLLGLMRGQGKVDDIDHLGNRRLRSVGELLQNQFRI 357 Query: 467 GLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITH 526 GL R+ER V+ER+++ D D+L PQ +IN +PI AA+KEFFGSSQLSQFMDQ NPL+E+TH Sbjct: 358 GLARMERVVRERMTIQDADSLTPQVLINTRPIVAAIKEFFGSSQLSQFMDQTNPLAELTH 417 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 KRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI +L+ YA+ NE+GF Sbjct: 418 KRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGNLTTYARVNEFGF 477 Query: 587 LETPYRKVTD--GVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSL 644 +ETPYRKV GVVT+EI YL+A EE Y+IAQAN L EG F++++V Sbjct: 478 IETPYRKVDKERGVVTNEIVYLTADEEEKYIIAQANVRLSPEGKFLDEMVNA-------- 529 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 +++ V S + F++ Sbjct: 530 ----------RHGSEILHVEPSKVDFVDV------------------------------- 548 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 S + ++ +++ + M Sbjct: 549 -------SPKQVFSVATSLIPFLEHDDANRALMGANMQRQAV------------------ 583 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 P + PV G + + D G + L +N V V+ Sbjct: 584 ----PLIRTEAPVV-GTGIEYKAAKDSGVVVLAKNPGV--------------------VE 618 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 I I+ G + I + +++ IV G V I + Sbjct: 619 RVTADEIVIRN--------DQGQIDRYKLIKFQRSNQGTCINQKPIVRKGERVEKDQI-I 669 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 +L + +L A + + +D+ L +S ++ VFT +E+ + Sbjct: 670 ADGPSTDHGELALGKNVLVAYMPWEGYNYEDAIL-----ISEKLVKEDVFTSIHIEEYEC 724 Query: 945 ALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 ++ ++ +D+ +E I+ G R +LV + + Sbjct: 725 DARDTKLGPEEITRDIPNVGEDALKDLDERGIIRIGAEVRPGDILVGKVTPKGETELTAE 784 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 +R L ++ ++ + L + E + K+ ++ GD+L+PGV +V+VY+ Sbjct: 785 ERLLRAIFGEKAREVRDTSLRVPHGESGKVVDVKVFSRE----NGDELSPGVNMLVRVYI 840 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR+I GDKMAGRHGNKGV+++I P EDMP+ +GTPV+IVLNPLGVPS Sbjct: 841 AQKRKISVGDKMAGRHGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPS--------- 891 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 IG + L + Sbjct: 892 ------RMNIGQILECHLGWAAKAL----------------------------------- 910 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 G+ +ATP+F+GA E +I E L+ LP G+I + DGRTGE F+ VTVGY+YMLK Sbjct: 911 ----GINVATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRTGEPFDSRVTVGYVYMLK 966 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE+LT+K Sbjct: 967 LAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIK 1026 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 SDDV GR K Y+ IV G + EPG+PESF VL+KE++SLG+++++ + Sbjct: 1027 SDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQSLGLDVKVLTD 1074 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 111/368 (30%), Positives = 182/368 (49%), Gaps = 33/368 (8%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 K+IR + K P++L++PYL+ IQ S+Q F+++ GL FR + PI ++ Sbjct: 3 PVQVGKKIRYSYAKFPEILELPYLIEIQKKSYQWFLDE------GLREVFREISPITDFT 56 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 GN L+++ Y LG+P + V+EC+ R TYSAPLRVK+RL +IKEQEV+ Sbjct: 57 GNLSLEFLDYYLGKPKYSVEECKERDFTYSAPLRVKVRL-------LNKETGEIKEQEVF 109 Query: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW 183 +G+ PLMT+ GTF+ NG ERV++SQ+ RSPGV+F +GK +Y A IIP RG+W Sbjct: 110 LGDFPLMTEKGTFIFNGAERVVISQMVRSPGVYFSEQVD---PNGKKMYLATIIPNRGAW 166 Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI---------RD 234 L+FE D D+++VRIDR RKLP T++L+AL Y ++ + F+ I Sbjct: 167 LEFETDVNDHIYVRIDRTRKLPVTVLLKALGYESKGRIAELFDHDDKIIATLERDNTDSR 226 Query: 235 NKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY- 291 + +E+ + GE + + ++ + R R + + Sbjct: 227 EEALIEIYKKLRPGEPPTVESAKTLLDSMFFDPKRYDLGNVGRYKLFKKLNHGVLYRYLE 286 Query: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS-----GHKRIETLFTNDLDHGPY 346 G+ Y+++ + D++ + G +++ + Sbjct: 287 EDGEKEYDKYLNDYVPVKREFIRELTNEDIIYTIRYLLGLMRGQGKVDDIDHLGNRRLRS 346 Query: 347 ISETLRVD 354 + E L+ Sbjct: 347 VGELLQNQ 354 >UniRef50_B8ZSC7 DNA-directed RNA polymerase subunit beta n=138 Tax=Bacteria RepID=RPOB_MYCLB Length = 1178 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 400/1214 (32%), Positives = 571/1214 (47%), Gaps = 189/1214 (15%) Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPAT-IILRALNYTTE 218 D +VLY I + F V K P + + Y Sbjct: 79 DLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEV------KAPVEECKDKDMTYAAP 132 Query: 219 QIL-DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL 277 + F EI+ + M P + E +F I +V V + R + + Sbjct: 133 LFVTAEFINNNTGEIKSQTVFMGDFP--MMTEKGTFIINGTERVVVSQLVRSPGVYFDET 190 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 + V+ I + ++ + + + + + L G + Sbjct: 191 IDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITE 250 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 + TL D T AL++IYR +RPGEPPT+E+A++L ENLFF E RYDL Sbjct: 251 RFGFS--EIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL 308 Query: 398 SAVGRMKFNRSLLREEIE--GSGILSKDDIIDVMKKLIDIRNGKG------------EVD 443 + VGR K N+ L E S L+++D++ ++ L+ + G+ E D Sbjct: 309 ARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGGVEVPVETD 368 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVK 503 DIDH GNRR+R+VGE+ +NQ RVG+ R+ER V+ER++ D++ + PQ +IN +P+ AA+K Sbjct: 369 DIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK 428 Query: 504 EFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 EFFG+SQLSQFMDQNNPLS +THKRR+SALGPGGL+RERAG EVRDVHP+HYGR+CPIET Sbjct: 429 EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIET 488 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 PEGPNIGLI SLSVYA+ N +GF+ETPYRKV DGVV+D Sbjct: 489 PEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSD---------------------- 526 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 E + D+ D V+ A FLE Sbjct: 527 -----------------EIEYLTADEEDRHVVAQANSPIDEAG--RFLEP---------- 557 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 R V + V + E S V+ ++ +++ + M Sbjct: 558 ---RVLVRRKAGEVEYVAS-SEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR 613 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 + ++ P V G + + D G ++ VA Sbjct: 614 QAVPLV---------------RSEAPLVGTGMELR--------AAIDAG------HVVVA 644 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS 863 E S ++ E V D G + Sbjct: 645 ---------EKSGVIEEVSAD-----------YITVMADD--GTRRTYRMRKFARSNHGT 682 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 ++S IV G V G + + ++ + LL AI + + +D+ + Sbjct: 683 CANQSPIVDAGDRVEAGQV-IADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSN-- 739 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFS 973 +++ V T +E+ + ++ ++ +D+ +E I+ G Sbjct: 740 ---RLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEV 796 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 R +LV + + P +R L ++ ++ + L + E ++ + Sbjct: 797 RDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSHE 856 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 D+L GV ++V+VY+A KR+I GDK+AGRHGNKGVI KI P EDMP+ +GTP Sbjct: 857 DD----DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTP 912 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VDI+LN GVP RMN+GQILETHLG AK G KI+ Sbjct: 913 VDIILNTHGVPRRMNVGQILETHLGWVAKS-GWKIDV----------------------- 948 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG----- 1208 + + ++TPVFDGAKE E++ LL G Sbjct: 949 -----AGGIPDWAVNLPEELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVG 1003 Query: 1209 ---QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 + L+DGR+GE F PVTVGYMY++KL+HLVDDK+HARSTG YS++TQQPLGGKAQF Sbjct: 1004 GDGKAVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQF 1063 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNV 1325 GGQRFGEME WA++AYGAAYTLQE+LT+KSDD GR K+Y+ IV G + EPG+PESF V Sbjct: 1064 GGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKV 1123 Query: 1326 LLKEIRSLGINIEL 1339 LLKE++SL +N+E+ Sbjct: 1124 LLKELQSLCLNVEV 1137 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 97/292 (33%), Positives = 154/292 (52%), Gaps = 30/292 (10%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFI-----------EQDPEGQYGLEAAFRSVFPIQ 60 R F K + L+VP LL +Q DSF+ I D + GLE + PI+ Sbjct: 38 RISFAKLREPLEVPGLLDVQTDSFEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIE 97 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +SG+ L + R E V+EC+ + +TY+APL V + +IK Q Sbjct: 98 DFSGSMSLSFSDPRFDEVKAPVEECKDKDMTYAAPLFVTAEFINNN-------TGEIKSQ 150 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 V+MG+ P+MT+ GTF+INGTERV+VSQL RSPGV+FD K+ + K L++ ++IP R Sbjct: 151 TVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKS--TEKTLHSVKVIPSR 208 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV--------IFEI 232 G+WL+F+ D +D + VRIDR+R+ P T++L+AL +T+EQI + F + Sbjct: 209 GAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQITERFGFSEIMRSTLEKDNTV 268 Query: 233 RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDV 282 ++ +++ + GE + + ++ ++ R AR R + Sbjct: 269 GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKL 320 >UniRef50_B3DTE2 DNA-directed RNA polymerase subunit beta n=146 Tax=Bacteria RepID=RPOB_BIFLD Length = 1187 Score = 797 bits (2059), Expect = 0.0, Method: Composition-based stats. Identities = 370/1177 (31%), Positives = 548/1177 (46%), Gaps = 178/1177 (15%) Query: 197 RIDRRRKLPATIILRALNYTTEQILDL-FFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 + R + Y+ ++ F EI+ + M P L+ +F I Sbjct: 107 YFEEPRHTVQECKEKDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFP--LQTPHGTFII 164 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 +V V + R + + + + I + ++ + + + Sbjct: 165 GGTERVIVSQLVRSPGVYFDRQQDRTSDKEVFGAKIIPSRGAWLEFEIDKKDQPQVRVDR 224 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + + L G + E P + + L + + ALV++YR +RP + Sbjct: 225 KRKQSAIVFLMAIGMTKSEIAQA--FKDYPLVLDALEKETLGTQDEALVDLYRKIRPADT 282 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 PT EA ++L ++ +F+ RYDL+ VGR K NR L E L ++DII +K L+ + Sbjct: 283 PTPEAGKNLLDSFYFNTKRYDLARVGRYKINRKLGVEADFNDRSLHQEDIIATIKYLVAL 342 Query: 436 RNGKGEVDDI---------------DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 +G DH GNRRIR VGE+ +NQ R GL R+ER V+ER++ Sbjct: 343 HDGAATFPGKRNGEDVDLRVDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMT 402 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540 D + + PQ +IN +P++A +KEFFG+SQLSQFMDQNNPLS +T+KRR+SALGPGGL+R Sbjct: 403 TQDAEAITPQSLINIRPVNATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSR 462 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 +RA EVRDVHP+H+GR+CPIE+PEGPNIGLI SL+ + + N +GF+ETPYRKV +G VT Sbjct: 463 DRASMEVRDVHPSHFGRMCPIESPEGPNIGLIGSLATFGRVNPFGFIETPYRKVVNGHVT 522 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 DE+ Y++A + ++VIAQAN LDE G+FV+ R E + + VS+ Sbjct: 523 DEVEYMTADRDLDHVIAQANQELDENGNFVQKSALARVGEE-------EAVDVPVSSVDY 575 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 + V V+ Sbjct: 576 MDVSPR------------------------------------------------QMVSLG 587 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 ++ +++ + M + P V G Sbjct: 588 ASLIPFLEHDEGHRALMGTNMQRQAVPLIESE---------------RPLVGTG---SEW 629 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 D E ++ T + + ++ Sbjct: 630 RAANDSGDVIKSE------------------------------KDGVVTYVSADLIRVMN 659 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 D G + ++ IV+ G V G ++ L + Sbjct: 660 DD---GTTSSYKLAKFQRSNQTTCYNQRPIVHDGERVEAGSVM-ADGPAIQNGDLALGKN 715 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960 LL A + +D+ + ++ + +E+ + ++ ++ +DL Sbjct: 716 LLIAFMPWNGYNYEDAVIISQ-----RLVQDDTLSSIHIEEYEIDARETKLGAEEITRDL 770 Query: 961 S----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 +E I+ G +LV + + P +R L ++ ++ + Sbjct: 771 PNVGEDAVANLDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVR 830 Query: 1011 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 L + E K + GD+L GV ++++VY+A R+I GDK++GRH Sbjct: 831 DTSLRVPHGETGTVIGVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRH 890 Query: 1071 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 1130 GNKG IS+I P EDMP+ +GTPVDI+LNPLGVPSRMN+GQ+LE HLG A Sbjct: 891 GNKGCISRILPEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAH-------- 942 Query: 1131 MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 G D+ +L + + AE P+ATPVFDG Sbjct: 943 --------------------SGWDISLDPNLEAEWKKLIPSGAEKAEPNTPVATPVFDGV 982 Query: 1191 KEAEIKELLKLGDLPTSG--------QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 K +K LL G + L+DGRTGE + +P++VGYMYMLKL+HLVDDK Sbjct: 983 KPEVLKGLLSTTLPNRDGDRLVGPDGKATLFDGRTGEPYTKPISVGYMYMLKLHHLVDDK 1042 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1302 +HARSTG YS++TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL EM+T KSDDV+GR Sbjct: 1043 IHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLHEMMTTKSDDVDGRV 1102 Query: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 ++Y IV G++ G+PESF VLLKE++SL +N+E+ Sbjct: 1103 RVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEV 1139 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 100/331 (30%), Positives = 148/331 (44%), Gaps = 38/331 (11%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI----------------EQDPEGQYGLEA 51 K R +FG + +DVPYLL +Q DSF I GL+ Sbjct: 25 KASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNERWKARVEEDEKNGTNTVAHTSGLDE 84 Query: 52 AFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 F + PI++++ L + EP VQEC+ + TYSAPL V + Sbjct: 85 VFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKEKDYTYSAPLYVNAEFENGD----- 139 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 +IK Q V+MG+ PL T +GTF+I GTERVIVSQL RSPGV+FD + + +S K + Sbjct: 140 --TGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGVYFDRQQDR--TSDKEV 195 Query: 172 YNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEK---- 227 + A+IIP RG+WL+FE D KD VR+DR+RK A + L A+ T +I F + Sbjct: 196 FGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMTKSEIAQAFKDYPLVL 255 Query: 228 ----VIFEIRDNKLQMELVPERLRGETASFD--IEANGKVYVEKGRRITARHIRQLEKDD 281 ++ ++L + +T + + Y R AR R Sbjct: 256 DALEKETLGTQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTKRYDLARVGRYKINRK 315 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + + + +D I + Sbjct: 316 LGVEADFNDRSLHQ---EDIIATIKYLVALH 343 >UniRef50_B2S092 DNA-directed RNA polymerase subunit beta n=4 Tax=Borrelia RepID=RPOB_BORHD Length = 1155 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 458/1354 (33%), Positives = 674/1354 (49%), Gaps = 239/1354 (17%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIE------QDPEGQYGLEAAFRSVFPIQSY 62 KR+ GK ++LD+P L+ IQL+S++KF++ P GLE+ FR VFP++S Sbjct: 3 KRVHLGQGKAEEILDLPNLIEIQLNSYEKFLQLERLKTNRPLLNEGLESVFRDVFPMKSS 62 Query: 63 SGNSELQYVSYRLGE--PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G L+Y Y + F +EC+ +G +Y A L+++L L T +I+++ Sbjct: 63 NGEVALEYEKYYIEYNSLSFTEKECKRKGQSYEAVLKIRLNLQF-------LTTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMTD GTF++NG ERVIVSQ+HRSPGV F +K LY ARIIPYR Sbjct: 116 DVYMGTIPLMTDRGTFIVNGAERVIVSQIHRSPGVVFYKEKD--------LYYARIIPYR 167 Query: 181 GSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTTEQ-ILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D KD L+V+IDR++++ T+ LRAL T + I++ F++ E+ ++ Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILVTLFLRALGLNTRERIIETFYKIRKIEVNEDT-- 225 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + G+ + +I + G +IT + I ++ VK I+ Sbjct: 226 ----KREITGQYLATNIIIKENMTYRAGDKITLQDIEDFLQNGVKEID------------ 269 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + + S+ + L + + + + + Sbjct: 270 -----------LIDFDGYDSVP-----GKHFISSDVILNCFEKEDAYFSLKDGFKE--LS 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 R S ++ +Y ++ PGEP + + AES N+FFSE RYDL VGR K ++ +++ S Sbjct: 312 RESVMLAVYSVLLPGEPISIDNAESDLRNVFFSEKRYDLGHVGRYKLSKKFGLDDLTTS- 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DI++ + L+ I +G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMTDIVNTISHLLRIYDGHDVLDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ YA+ N+YGFLETPYRKV DG Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYAKVNDYGFLETPYRKVVDGK 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VTDEI YLSAI+E IAQAN+ ++ EG++++DL++ R Sbjct: 551 VTDEIEYLSAIDEEKKCIAQANAAVNAEGNYIDDLISVRVS------------------- 591 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 ++IP S ++ Sbjct: 592 ---GDYTTMIP----------------------------------KNIDYMDVSPRQLIS 614 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 ++ +++ + + M Q P V G Sbjct: 615 VSSALIPFLEHNDANRALMGSNMQRQAVP---------------LLFPQPPIVGTG---- 655 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 E + ++ V ++ ++R T+ I Sbjct: 656 -------------MERIVAKDSGV-------------VVKAKRSGIVVLATSKKIVIRPE 689 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 + D E + + S +V G V G+I + ++ Sbjct: 690 DAADDHDLDE--YELAKYERTNQDTSFNHSVLVKEGQVVNKGEI-IADGPATRYGEVALG 746 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 LL + +D+ L +S +I ++T +++ + ++ ++ Sbjct: 747 NNLLVGFIPWNGFNYEDAIL-----ISERIIKEDLYTSIHIKEFSIEVRETKLGPEKVTA 801 Query: 959 DLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 D+ +E I+ G + + +L+ + D P + L ++ K Sbjct: 802 DIPNVSGKILNKLDENGIVRIGTYVKPGDILIGKVTPKSEGDITPEFKLLTSIFGEKAKD 861 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + L + + + K +L PGV +I+KVY+A KR+++ GDKMAG Sbjct: 862 VKNNSLKVPHGTEGTVIDVQRITKDDV----SNLPPGVDEILKVYIAKKRKLKEGDKMAG 917 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHGNKGV++KI P+EDMPY +GTP+DI LNPLGV + IG + Sbjct: 918 RHGNKGVVAKILPVEDMPYLADGTPLDICLNPLGV---------------PSRMNIGQLM 962 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 + G PVF+ Sbjct: 963 ES---------------------------------------QLGLAGKYLGEYYDVPVFE 983 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 A I+E LK + + LYDG TGE FE V VG +YMLKL+HLVDDKMHARST Sbjct: 984 SATNECIQEKLKKAGFNETSKAVLYDGYTGEPFENEVMVGIIYMLKLHHLVDDKMHARST 1043 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNI 1308 G YSLV+QQPLGGKAQFGGQR GEMEVWALEAYGAA+TLQE+LTVKSDD++GR K+Y+NI Sbjct: 1044 GPYSLVSQQPLGGKAQFGGQRLGEMEVWALEAYGAAHTLQELLTVKSDDMSGRVKIYENI 1103 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 V G G+PESFNVL++E+R LG ++ + D+ Sbjct: 1104 VKGIPTNVSGIPESFNVLMQELRGLGFDLSIYDD 1137 >UniRef50_Q85FR7 DNA-directed RNA polymerase subunit beta n=1 Tax=Cyanidioschyzon merolae RepID=RPOB_CYAME Length = 1036 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 345/1206 (28%), Positives = 525/1206 (43%), Gaps = 197/1206 (16%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 + + ++ S + I L+ + + Sbjct: 1 MRDLIAVQRNSYYTFLTK---SLKEEFDKISPIVDYTGQLELHLITSKM---ELKPPKIT 54 Query: 205 PATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 P + + Y+ + + ++R + +P L E A+F I +V V Sbjct: 55 PVQAKRQDITYSVGMYMPVQLWNHQTGDVRQQMIYFGEIP--LMTEDATFIINGAERVVV 112 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 + R + + L + ++A + Y + L + + L+ Sbjct: 113 NQIVRSPGVYFQALWDKQH-VRTFEATFMANRGAWIKYELDKQKLLWVRLDKNRKMPLVI 171 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 L G E L + + N+ +ALVE Y+ MRPGEP T +A+ Sbjct: 172 FLQALGLNLQEI--KPHLTNREVFERSWENHAVNNTEAALVEFYKKMRPGEPATVHSAKQ 229 Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVD 443 L FF +YDLS VGR K N+ L + IL+ D++ + LI + + VD Sbjct: 230 LLYARFFDPKKYDLSEVGRYKLNQKLHLDIPLSVHILTTSDLLAGLDYLIQLCLDRARVD 289 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVK 503 DIDHL NRR++ VGE+ +NQ R+GL R+E+ ++E++++ + L P ++N KP+++A++ Sbjct: 290 DIDHLANRRLKCVGELLQNQVRIGLSRLEKLLREKMTI--GEKLQPSSLLNPKPLTSAIR 347 Query: 504 EFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIET 563 EFF SSQLSQFMDQ NPL+E+THKRRISALG GGLTRERAGF VRD+HP+HYGR+CPIET Sbjct: 348 EFFASSQLSQFMDQINPLAELTHKRRISALGAGGLTRERAGFAVRDIHPSHYGRICPIET 407 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 PEGPN GLI SL+++A+ N YGF+ETPY V G V I YL+A E NY +A A+ Sbjct: 408 PEGPNAGLIGSLAIFARVNRYGFIETPYYPVKKGQVQKSIVYLTADVEDNYRLAPADVKY 467 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 D EG + + Sbjct: 468 DREGQI--------------------------------------CSPIVAVRYRQEWTTC 489 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 + S + ++ ++ +++ + M Sbjct: 490 DAS------------------HVDYMAISPIQFISAATCLIPFLEHDDANRALMGSNMQR 531 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 P VS G+ G + Sbjct: 532 QAVP---------------LIRASKPYVSTGQE----------KWMVQGVFSKA------ 560 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS 863 + ++ + + + N Sbjct: 561 ---------------------DGIVRSVQATSIRIQHARGPVDYALLKYQKSNQDT---- 595 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 +D +V++G V G L+ + +L + +L A + + +D+ + Sbjct: 596 CIDYRPLVWVGEHVVKGQ-LIAQSAAMDSGELALGQNVLIAYMPWEGYNFEDAFV----- 649 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFS 973 +S ++ V+T +EK + ++ +Q + + +E I+ G + Sbjct: 650 ISERLVYEDVYTSIHIEKYETDARQTKLGAEQITRQIPNVGEHALRQLDEHGIISVGSWV 709 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 ++LV + D+ P + L ++ + + L ++ ++ Sbjct: 710 EAGSILVGKITPKGESDQPPEGKLLRAIFGEKNQHVKDSSLRMPNGSRGRVIHVRILSRD 769 Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 + GD+L GV V+V +AVKR IQ GDKMAGRHGNKG++++I P DMPY +GTP Sbjct: 770 Q----GDELPAGVNISVRVSVAVKRVIQVGDKMAGRHGNKGIVARILPRCDMPYLPDGTP 825 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 VD++LNPLGVPSRMN+GQ+ E LG+AA + +I + + + Sbjct: 826 VDVILNPLGVPSRMNVGQLFEALLGLAAHRLRKRIKIVPFDEMYHKEASRI--------- 876 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + + LK L Q LY Sbjct: 877 ----------------------------------------FVHQQLKRAALSA--QTILY 894 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 DGR+GE+F+ VTVG YMLKL HLVD+K+HARSTG YSLVTQQPLGG+AQ GGQR GEM Sbjct: 895 DGRSGEKFDNAVTVGMAYMLKLVHLVDEKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEM 954 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 EVWALEAYGAAYTLQE+LT+KSDD+ GRT IV G PESF VL++E+++L Sbjct: 955 EVWALEAYGAAYTLQELLTLKSDDMEGRTATLNAIVKAQPIPRGGTPESFKVLMRELQAL 1014 Query: 1334 GINIEL 1339 G+++ + Sbjct: 1015 GLDVTV 1020 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 157/382 (41%), Gaps = 40/382 (10%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPVFD 81 + L+++Q +S+ F+ + L+ F + PI Y+G EL + L P Sbjct: 1 MRDLIAVQRNSYYTFLTKS------LKEEFDKISPIVDYTGQLELHLITSKMELKPPKIT 54 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 + + + +TYS + + ++L ++ D+++Q +Y GEIPLMT++ TF+ING Sbjct: 55 PVQAKRQDITYSVGMYMPVQLWNHQ-------TGDVRQQMIYFGEIPLMTEDATFIINGA 107 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 ERV+V+Q+ RSPGV+F + K H + A + RG+W+ +E D + L+VR+D+ Sbjct: 108 ERVVVNQIVRSPGVYFQALWDKQHV---RTFEATFMANRGAWIKYELDKQKLLWVRLDKN 164 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL--------QMELVPERLRGETASF 253 RK+P I L+AL ++I + +FE +E + GE A+ Sbjct: 165 RKMPLVIFLQALGLNLQEIKPHLTNREVFERSWENHAVNNTEAALVEFYKKMRPGEPATV 224 Query: 254 DIEANGKV--YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + + + R + ++ ++ + LI Sbjct: 225 HSAKQLLYARFFDPKKYDLSEVGRYKLNQKL----HLDIPLSVHILTTSDLLAGLDYLIQ 280 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 +D + L+ K + L N + G E L + I ++ Sbjct: 281 LCLDRARVDDIDHLANRRLKCVGELLQNQVRIGLSRLEKLLREKMT--------IGEKLQ 332 Query: 372 PGEPPTREAAESLFENLFFSED 393 P + S F S Sbjct: 333 PSSLLNPKPLTSAIREFFASSQ 354 >UniRef50_B1AIH5 DNA-directed RNA polymerase subunit beta n=22 Tax=Mycoplasmataceae RepID=RPOB_UREP2 Length = 1434 Score = 778 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 461/1464 (31%), Positives = 695/1464 (47%), Gaps = 220/1464 (15%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 + K +R+D+ K + P LL IQ++SF++F+E+D L+ S+FP++S Sbjct: 10 KFITDKVMRRDYSKIKSNFEGPNLLEIQVESFKRFMEKD------LKEVISSIFPLKSPQ 63 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK--EQE 121 G L + ++ +P D C+ G T+ P+ + L L + ++ K E Sbjct: 64 GKYTLAFKGLKIKQPTKDESACRDEGKTFETPIYIDLELTDNYTGEVKRAQRNTKTGEDG 123 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFD-SDKGKTHSSGKVLYNARIIPYR 180 +Y+G IP MT+ GTFVING E+ ++SQ+ RSPG++ K + S K L+ +I Sbjct: 124 IYLGAIPKMTEKGTFVINGIEKFVISQIVRSPGIYVLGKSSIKLNGSRKRLFEGKICEIY 183 Query: 181 GSW--LDFEFDPKDNLFVRI-------DRRRKLPATIILRALNYTTEQILDLFFEKVIFE 231 S L + PKD ++I D + T +L+A T+ +IL +F + Sbjct: 184 PSKGTLMLGYIPKDRHNIQIVARDSSGDNAQTFSVTTLLKAFGLTSAEILKIFNNEKEIR 243 Query: 232 IR--DNKLQMELVPERLRGETASFDIEANGKVYVEKGRR--ITARHIRQLEKDDVKLIEV 287 K E + E + F I ++ EK R + + + L+ Sbjct: 244 ESLEIEKYAPEYIFENSQENEIIFKIYSDAHDIHEKADRRESNNKLKEEYIEQGSPLLSK 303 Query: 288 PVEYIAGKVVAKDYID----------------------ESTGELICAANMELSLDLLAKL 325 + I V D ID + E+I E + + +L Sbjct: 304 LKQLIFNYVEKNDEIDALLHENKDVEDASFIKNNKKLYDEREEIINCIISEKAAKDIVEL 363 Query: 326 SQSGHKRIETLF----------------------TNDLDHGPYISETLRVDPTNDRLSAL 363 K IETL + + + L + ++ A Sbjct: 364 LGINIKNIETLRHLGKASYQIALQQHFFNKRLYDISSAGRYKFEKKLLLSERLYQKVIAN 423 Query: 364 VEIYRMMRPG------------EPPTREAAESLFENL-----------FFSEDRYDLSAV 400 I + E +E+ + + E + ++ Sbjct: 424 DIIDKKNNILIPKDTLITKEHIELIKKESRDKNIKWTKKINLLPTALESEIEQFLEYESI 483 Query: 401 GRMKFNR-------SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 K N + L+ D++ + ++ GE DDIDHLGN+R+ Sbjct: 484 AVYKDNDLRDETTEIVGLASGCKLQTLTVADLVATTSYIYNLNYEIGEFDDIDHLGNKRL 543 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD---------------------- 491 + + E+ + + R+E+ + E+L++ D + + Sbjct: 544 KLIHELLRARIATSMARIEKFINEKLAISDGSSNNITNVNDKGIDTELDREIEESDMSDE 603 Query: 492 ----------MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE 541 +IN K + VK+FF S QL QF+DQ NPL+E+T+KRRISA+GPGG++RE Sbjct: 604 EKKKAISVKSIINTKQFQSLVKDFFNSHQLIQFIDQQNPLAELTNKRRISAMGPGGISRE 663 Query: 542 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 ++RDVH +HY R+CPIETPEG NIGLI SL+ A+ +E GF+ PY V DGVV + Sbjct: 664 DPNLDIRDVHHSHYSRICPIETPEGMNIGLIMSLASLAKVDENGFIVAPYYVVEDGVVKE 723 Query: 602 EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 + YL+A E+ NY+IA+++ LDE +++ V R +G + LFS ++VD++D+ +QVV Sbjct: 724 DYKYLTAHEDDNYIIAESSVQLDENKRILDEQVVARYRGSTGLFSPNEVDFIDIVPKQVV 783 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 S+ AS IPF+E+DD RALMG+NMQRQA P ++ P+VGTG E +A DSG+ VAK Sbjct: 784 SIAASAIPFIENDDGARALMGSNMQRQATPLIKPYAPIVGTGTEFKIAHDSGMAVVAKND 843 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 GVV++VD+ +I+I+ + D++ D Y L KY +SNQ+TC NQ+P V +G+ V + + Sbjct: 844 GVVEFVDSQKIIIRNDNDKL-------DDYKLIKYRKSNQDTCNNQIPIVKVGQRVHKSE 896 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 + DGP+ GELALG+N+ V + W GYNFED+I++SER+V +D FT+IHI E Sbjct: 897 TIGDGPAMQNGELALGRNILVGYTTWRGYNFEDAIIISERLVDQDVFTSIHIDEHTIQCM 956 Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 TK G EEIT D+PNV + A LD GIV +GAEV GD+LVGK TP+G + PE++L Sbjct: 957 KTKNGDEEITRDMPNVSDTAKRFLDNQGIVLVGAEVHEGDVLVGKTTPRGNVETAPEDRL 1016 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR---DGVEKDKRALEIEEMQLKQAKK 958 L+ IFG+K+ VKDSSL+V +G G V V+ +G E +EI ++ + Q +K Sbjct: 1017 LQTIFGDKSKTVKDSSLKVKHGQEGIVAAVKRIKSSDENGSELPDDVIEIIKVYIVQKRK 1076 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 + G + V+ + K D P D L L + N + L Sbjct: 1077 IQVGDKMAGRHGNKGIVSKVVPIQDMPFLK-DGTPLDIMLN-PLGVPSRMNIGQILELHL 1134 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 E KK + G + + I K+ N Sbjct: 1135 GYAAAEIGKKQLIQIAIDQLGYEKYISLFGI---------NEIIAKKLYENISNL----I 1181 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 + D + V I+L LG++ IG KI+ + Sbjct: 1182 KHKQAKQAKDIDLIDVTIILKE----------------LGLSYDDIGIKISTPVFDGANH 1225 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKEL 1198 + + A + + K L Sbjct: 1226 DDIVSIMNEANIDIENNKGKQVL------------------------------------- 1248 Query: 1199 LKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP 1258 YDGRTGE F+ ++VG YMLKL+H+VDDK+H+RS G YS +TQQP Sbjct: 1249 --------------YDGRTGEPFDGLISVGLTYMLKLDHMVDDKIHSRSVGPYSKITQQP 1294 Query: 1259 LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG 1318 LGGK+Q GGQRFGEMEVWALEAYGAAY L E+LT+KSDDV GR + Y I+ G+ + G Sbjct: 1295 LGGKSQNGGQRFGEMEVWALEAYGAAYNLLEILTIKSDDVQGRNQAYNAIIKGHDVVADG 1354 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 MPESF +L K+++ LG+ I +E + Sbjct: 1355 MPESFKLLTKQMQGLGLCITVETK 1378 >UniRef50_C1E1U0 DNA-directed RNA polymerase n=426 Tax=Eukaryota RepID=C1E1U0_9CHLO Length = 1178 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 206/1379 (14%), Positives = 424/1379 (30%), Gaps = 264/1379 (19%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 + + L QLDSF +FI+ + I + ++ Sbjct: 16 QEDAWTVISSFFEEKGLARQQLDSFNEFIQHTMQ-------------EIVDEMSDFTIE- 61 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 +E + E + ++ +++Y+ + P++ Sbjct: 62 -----------PEE---------------QHMPGEEADGKGKKKYKVEFKQIYLSK-PMV 94 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 T+ +G + + R + + + + + I G +++ D Sbjct: 95 TEA-----DGMTSTLFPKEARLRNLTYSAPLYIDMAKSTITTTDEIDATTGKYIE-TIDT 148 Query: 191 KDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 ++ V K+P + + + +L + + L + Sbjct: 149 EEYPKVFF---GKVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFIINGSEKVLIAQ- 204 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + + VYV + R+ + + + ++ + G + Sbjct: 205 ---EKMSTNHVYVFEKRQPSKYMWVAECRSSPESGARAASSCMARLCHAPGTKDEAGVIS 261 Query: 311 CAANMELS-LDLLAKLSQSGHKRIETLFTNDLDHGP------YISETLRVDP-TNDRLSA 362 + + L G + + + + + ++ + A Sbjct: 262 VTIPYIRTEIPLFVVFRALGFVADKDILEHLVYDFEDHEMMQLLRNSIEEAQVIQSQDVA 321 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L I + + + L VG EG Sbjct: 322 LDFIGKR----GSAVGVTRPKRIQYAREILQKELLPHVG-----------VNEGCETKKA 366 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLS 480 + ++ +L+ G+ + DD DH GN+R+ G + FR +V + V+ + Sbjct: 367 YFLGYIVNRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQLFRKVTKDVRLYSQRC 426 Query: 481 LGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKR 528 + + + AK I++ +K + SQ +++ + S ++H R Sbjct: 427 IDSGKDIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIRAGVSQVLNRLSFSSTLSHLR 486 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R+++ + RE + R +H +H+G VCP ETPEG +GL+ +LS+ + G Sbjct: 487 RLNS----PIGREGKLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSV-GSPS 541 Query: 589 TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESSL 644 P + + + + +S N N V+ L R K + ++ Sbjct: 542 APLLEFLEEWSMENLEEISPSVIVNATKIFVNGVWVGVHREPAQLVQTLRNLRRKLDITI 601 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 V + + ++ + I L + N ++ + +K + G Sbjct: 602 EVGV-VHDIALRELRLYTDYGRCIRPLFIVEDNHLVIKKKDIQMLY-----EKEITG--- 652 Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 G ++YVD + + I L Sbjct: 653 --------YTWNDLVATGCIEYVDTEEEETTM---------IAMTIDEL----------- 684 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 + Q G PS LG + + +P+ +N + + Sbjct: 685 VGQRINAEPGGVKHMYTHCEIHPSMILG-------ICASIIPFPDHNQSPRNTYQSAMGK 737 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 + + R L P V A+ L + Sbjct: 738 QAMGMYV----TNFQIRMDTLAYVLFYPQKPLVTTRAMEHLHFRELPA------------ 781 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 ++ I + +DS + + + + +F R +++K+ Sbjct: 782 -------------GVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFR-SIFYRSFKDEEKK 827 Query: 945 ALEIEEMQLKQAKKD-----LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + +L++ +D L+ + + K LP D Sbjct: 828 QGSLTKEELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGEDIIIGKTSPLPEDDPSA 887 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 + ++ ++ + + + +T D L+ VK+ + R Sbjct: 888 VS----------KRFTKRDCSTGMKNSETGIIDQVLLTTND----QGLRFVKIRVRSCRT 933 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 Q GDK + RHG KG I EDMP+ G DI++NP +PSRM IGQ++E +G Sbjct: 934 PQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRMTIGQLVECLMGK 993 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 A +G + +A V + + + + G Sbjct: 994 VAAMMGKEGDATPFTPVTVESISDMLHMCGYQKRGNEVMYNG---------------HTG 1038 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 + +F +G Y +L H+V Sbjct: 1039 RKLEAKIF---------------------------------------LGPTYYQRLKHMV 1059 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+H+R G ++T+QP+ G+++ GG RFGEME + ++GAA L+E L +SD Sbjct: 1060 DDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYR 1119 Query: 1300 GRTKMYKN-------------IVDG----NHQMEPGMPESFNVLLKEIRSLGINIELED 1341 ++ MP + +L +E+ S+ + L Sbjct: 1120 IHVCETCGLIAVANLKNQTFECCKNPSERTKVVQVMMPYACKLLFQELMSMAVAPRLVT 1178 >UniRef50_C8W3X7 DNA-directed RNA polymerase n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W3X7_DESAS Length = 1227 Score = 767 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 375/1199 (31%), Positives = 543/1199 (45%), Gaps = 221/1199 (18%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILD-LFFEKVIFEIRDNKLQMELVPERLRGET 250 + L + + R + Y + K E+++ ++ M P L E Sbjct: 66 EFLDYTLGEPKYFVEECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFP--LMTEK 123 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 +F I +V V + R + + K + I + ++ + + Sbjct: 124 GTFIINGAERVIVSQLVRSPGVYFAEQIDPSGKKL-FSATIIPNRGAWLEFETDVNDHVF 182 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + + + G+ + + I ETL D T ALVEIY+ + Sbjct: 183 VRIDRTRKIPATVLIRALGYSSDA-MVMEEFGEDKNIQETLSRDNTGSEEDALVEIYKRL 241 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE----------------- 413 RPGEPPT E+A +L E LFF RYDL+ VGR K ++ L Sbjct: 242 RPGEPPTVESARTLLETLFFDPKRYDLANVGRYKLHKKLQHGVLYRYPEEQSGKIEYDEI 301 Query: 414 --------IEGSGILSKDDIIDVMKKLIDIRNGKGE------------VDDIDHLGNRRI 453 E L+ DI+D +K L+ + G E VDDIDHLGNRR+ Sbjct: 302 LKQELPVEREFIRELTPKDILDTIKYLLRLVQGITEEKDPLGRNIEYTVDDIDHLGNRRL 361 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 RSVGE+ +NQFR+GL R+ER V+ER+++ D+D + PQ +IN +P+ A++KEFFGSSQLSQ Sbjct: 362 RSVGELLQNQFRIGLSRMERVVRERMTIQDVDVITPQVLINIRPVVASIKEFFGSSQLSQ 421 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 FMDQ NPL+E+THKRR+SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI Sbjct: 422 FMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIG 481 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 SLS YA+ N++GF+ETPYR+V Sbjct: 482 SLSTYARINQFGFIETPYRRVDKEK----------------------------------- 506 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 ++++Y+ V I + N+ QAV Sbjct: 507 ----------RIVTNEIEYL------TADVEDRNIIAQANAPLNKEGFFTE---QAVNAR 547 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 + L G + S + ++ +++ + M + Sbjct: 548 HGHEILKVPGEKIDFMDVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAVPLV---- 603 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 Q P V G + + D G + L Sbjct: 604 -----------KAQAPVVGTGVEYK--------AARDSGVVPLA---------------- 628 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 + + R G + + + +++ IV Sbjct: 629 -----------RKSGIVEKVTANDIMIRSDD-GTSDYHKLLKFTRSNQGTCINQRPIVTK 676 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 G V GDI + +L +L A + +D+ L + Sbjct: 677 GQRVDEGDI-IADGPATDNGELALGRNILVAFMPWDGYNYEDAILISEKA-----VKEDF 730 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGG 983 FT +E+ + ++ ++ +D+ ++ I+ G R ++V Sbjct: 731 FTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDIMVGKV 790 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + + +R L ++ ++ + L + E + K+ ++ GD+L Sbjct: 791 TPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFSRD----NGDELP 846 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 PGV +V+VY+A KR+I GDKMAGRHGNKGV+++I P EDMP+ +GTP++IVLNPLGV Sbjct: 847 PGVNHLVRVYIAQKRKISVGDKMAGRHGNKGVVARIMPEEDMPFLPDGTPIEIVLNPLGV 906 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRMNIGQ+LETHLG AA+ +G ++ + + + EF+++A D T Sbjct: 907 PSRMNIGQVLETHLGWAARKLGCYVSTPVFNGATESDILEFLRKADLPDTAKTTLHDGRT 966 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 FD Sbjct: 967 --------------------GEPFDN---------------------------------- 972 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 P+TVGY+YMLKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG+ Sbjct: 973 PITVGYVYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGS 1032 Query: 1284 AYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 AYTLQE+LTVKSDDV GR K Y+ IV G + EPG+PESF VL+KE++SLG+++++ E Sbjct: 1033 AYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGLDVKVLSE 1091 Score = 746 bits (1925), Expect = 0.0, Method: Composition-based stats. Identities = 424/1056 (40%), Positives = 594/1056 (56%), Gaps = 129/1056 (12%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 MVY+ R R +FGK +VLD+P L+ +Q +S++ F++ GL F + PIQ Sbjct: 4 MVYAEKLGTRERLNFGKFKEVLDLPNLIEVQRNSYKWFLKN------GLREVFHDISPIQ 57 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 ++GN L+++ Y LGEP + V+EC+ R VTY+APLRVK+RL+ E ++KEQ Sbjct: 58 DFTGNLVLEFLDYTLGEPKYFVEECKERDVTYAAPLRVKVRLINKE-------TGEVKEQ 110 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 EV+MG+ PLMT+ GTF+ING ERVIVSQL RSPGV+F SGK L++A IIP R Sbjct: 111 EVFMGDFPLMTEKGTFIINGAERVIVSQLVRSPGVYFAEQID---PSGKKLFSATIIPNR 167 Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL-DLFFEKVIFEI------- 232 G+WL+FE D D++FVRIDR RK+PAT+++RAL Y+++ ++ + F E + Sbjct: 168 GAWLEFETDVNDHVFVRIDRTRKIPATVLIRALGYSSDAMVMEEFGEDKNIQETLSRDNT 227 Query: 233 -RDNKLQMELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + +E+ GE + + ++ + R A R ++ Sbjct: 228 GSEEDALVEIYKRLRPGEPPTVESARTLLETLFFDPKRYDLANVGRYKLHKKLQHG---- 283 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 ++ E + E L +I E Sbjct: 284 -------------------VLYRYPEE---------QSGKIEYDEILKQELPVEREFIRE 315 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 D + L + + +P R Y + + L Sbjct: 316 LTPKDILDTIKYLLRLVQGITEEKDPLGR-------------NIEYTVDDI------DHL 356 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 + G L ++ + ++ + + + D+D Sbjct: 357 GNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDVD----------------------- 393 Query: 470 RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRR 529 + PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+THKRR Sbjct: 394 ----------------VITPQVLINIRPVVASIKEFFGSSQLSQFMDQTNPLAELTHKRR 437 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +SALGPGGL+RERAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS YA+ N++GF+ET Sbjct: 438 LSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARINQFGFIET 497 Query: 590 PYRKVTDGV--VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 PYR+V VT+EI YL+A E +IAQAN+ L++EG F E V R E Sbjct: 498 PYRRVDKEKRIVTNEIEYLTADVEDRNIIAQANAPLNKEGFFTEQAVNARHGHEILKVPG 557 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 +++D+MDVS +QV S+ +LIPFLEHDDANRALMGANMQRQAVP ++A P+VGTG+E Sbjct: 558 EKIDFMDVSPKQVFSIATALIPFLEHDDANRALMGANMQRQAVPLVKAQAPVVGTGVEYK 617 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 A DSGV +A++ G+V+ V A+ I+I+ ++ D + L K+TRSNQ TCINQ Sbjct: 618 AARDSGVVPLARKSGIVEKVTANDIMIRSDD-------GTSDYHKLLKFTRSNQGTCINQ 670 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V+ G+ V+ GD++ADGP+TD GELALG+N+ VAFMPW+GYN+ED+IL+SE+ V+ED Sbjct: 671 RPIVTKGQRVDEGDIIADGPATDNGELALGRNILVAFMPWDGYNYEDAILISEKAVKEDF 730 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 FT+IHI+E C +RDTKLGPEEIT DIPNVGE L LD+ GI+ +GAEV GDI+VGKV Sbjct: 731 FTSIHIEEYECDARDTKLGPEEITRDIPNVGEEILKDLDDRGIIRVGAEVRPGDIMVGKV 790 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRAL 946 TPKGET+LT EE+LLRAIFGEKA +V+D+SLRVP+G +G ++DV+VF+RD G E Sbjct: 791 TPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFSRDNGDELPPGVN 850 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 + + + Q +K + G + ++ + D P + L L Sbjct: 851 HLVRVYIAQKRKISVGDKMAGRHGNKGVVARIMPEEDMPF-LPDGTPIEIVLN-PLGVPS 908 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + N + L + + D+ Sbjct: 909 RMNIGQVLETHLGWAARKLGCYVSTPVFNGATESDI 944 >UniRef50_A5USR7 DNA-directed RNA polymerase subunit beta n=8 Tax=Bacteria RepID=RPOB_ROSS1 Length = 1229 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 382/1219 (31%), Positives = 546/1219 (44%), Gaps = 179/1219 (14%) Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 L R R + Y+ +++ + L E + Sbjct: 84 FLDYHFGEPRYNEHECRERGITYSAPIRVNVQLRILSTGELKESEIFLGDF-PLMTENGT 142 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 F I +V V + R + ++ + + I + ++ + Sbjct: 143 FVINGAERVVVSQLIRSPGVYFKEEKDPTSGRSLHSAKLIPSRGAWLEFETNKRDVISVK 202 Query: 313 ANMELSLDLLAKLSQS-----------------------GHKRIETLFTN-DLDHGPYIS 348 + + + + L + I LF + + YI Sbjct: 203 VDRKRKIPVTILLRAVLGWRANPDGSGQWAPDNELDQRGRDEEILELFAHLETGDHQYIK 262 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 TL DP AL+E+Y+ +RPG+PPT + A +L E L F+ RYDLS VGR K N++ Sbjct: 263 ATLDKDPARHAKEALLELYKRLRPGDPPTLDNARNLIEALLFNPRRYDLSRVGRYKLNKN 322 Query: 409 LLRE----------EIEGSGILSKDDIIDVMKKLIDIRNGK--GEVDDIDHLGNRRIRSV 456 L + +L DDI +++++I + NG DDIDHLGNRR+R+V Sbjct: 323 LWEKDTRPEVRRQAPDVKVRVLLPDDIFKIVERMIQLNNGTPGLRADDIDHLGNRRVRTV 382 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD 516 GE+ + QFRVGL+R+ER +KER+SL D +T P ++N +P+ AA++EFFG +QLSQFMD Sbjct: 383 GELIQQQFRVGLLRMERVIKERMSLQDPETATPNALVNIRPVVAAMREFFGGAQLSQFMD 442 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 Q NPL+E+THKRR+SALGPGGL+R+RAGFEVRDVH +HYGR+CP+ETPEGPNIGLI ++S Sbjct: 443 QTNPLAELTHKRRLSALGPGGLSRDRAGFEVRDVHHSHYGRICPVETPEGPNIGLIGTMS 502 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 YA+ NE GFLETPYRKV S + +G + D+ Sbjct: 503 TYARVNEMGFLETPYRKVYRE-------------------VPNASEWERQGLLLRDVRDL 543 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV------ 690 R GE +VD V + ++ D ++ Q Sbjct: 544 R-TGELIAVRGTRVDAAVARRIAVALLRGQILREDVVDPTTGEVIAHAGQEVNRALAERI 602 Query: 691 -----------PTLRADKPLVGTGMERAVAVDSGVTAVAKRG----GVVQYVDASR---- 731 P + + + E + + + G V A Sbjct: 603 VETPLKIIKIRPVVSQEVDYLSADEEDRFVIVQANAPLDEHNRFLEGTVSVRYAGDFDDV 662 Query: 732 -IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTD 790 I D + + + N + P+ R D G + Sbjct: 663 PIERVDYMDVSPKQVVSVSTALIPFLEHDDANRALMGSNMQRQAVPLLRPDAPIVGTGME 722 Query: 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI 850 + VA D +++S + + G E Sbjct: 723 YVAARDSGQVVVA--------KADGVVLSATADE--------------IVILEDDGNERS 760 Query: 851 TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKA 910 + + +++ IV G V GDI + + +L + +L A + Sbjct: 761 YRLRKFMRSNQDTCINQRPIVSRGQRVRKGDI-IADSSSTDNGELALGQNVLVAFMPWEG 819 Query: 911 SDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS--------- 961 + +D+ L VS ++ +FT +EK + ++ ++ +D+ Sbjct: 820 GNFEDAIL-----VSERLVREDIFTSIHIEKYEVEARDTKLGPEEITRDIPNVGQDSLRN 874 Query: 962 -EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 ++ I+ G + +LV + D +R L ++ ++ + L Sbjct: 875 LDDRGIIYIGAEVQPNDILVGKITPKGETDLTAEERLLRAIFGEKAREVKDSSLRVPNGV 934 Query: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 + K+ + + +L GV + V V L KR+I GDKMAGRHGNKGV+S+I Sbjct: 935 RGKVIDVKVFTRDDDV----ELPVGVNQRVDVLLCQKRKISAGDKMAGRHGNKGVVSRIL 990 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 PIEDMP+ +GTPVDI IL + IG + Sbjct: 991 PIEDMPFLPDGTPVDI---------------ILNPIGVPSRMNIGQIL------------ 1023 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 E R G +ATPVFDGA E EIKE LK Sbjct: 1024 ---------------------------ETHLGWAAARLGYRVATPVFDGATETEIKEWLK 1056 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 DLP G+I LYDGRTGE F+RPVTVGY+YM+KL HLV+DK+HARSTG YSLVTQQPLG Sbjct: 1057 RADLPPDGKITLYDGRTGEAFDRPVTVGYIYMMKLAHLVEDKIHARSTGPYSLVTQQPLG 1116 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP 1320 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV GR K Y+ IV G E G+P Sbjct: 1117 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVVGRVKTYEAIVKGEPIQEAGVP 1176 Query: 1321 ESFNVLLKEIRSLGINIEL 1339 ESF VL+KE++SLG+++E+ Sbjct: 1177 ESFKVLIKELQSLGLSVEV 1195 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 103/312 (33%), Positives = 163/312 (52%), Gaps = 52/312 (16%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NS 66 K R F + +++P L+ QL+SF+ F + GL F + PI ++G N Sbjct: 27 GKIERYSFARISNAIELPKLIETQLNSFEWF------RKEGLRELFEEISPITDFTGKNM 80 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 EL+++ Y GEP ++ EC+ RG+TYSAP+RV ++L I + ++KE E+++G+ Sbjct: 81 ELRFLDYHFGEPRYNEHECRERGITYSAPIRVNVQLRI-------LSTGELKESEIFLGD 133 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 PLMT+NGTFVING ERV+VSQL RSPGV+F +K +SG+ L++A++IP RG+WL+F Sbjct: 134 FPLMTENGTFVINGAERVVVSQLIRSPGVYFKEEKDP--TSGRSLHSAKLIPSRGAWLEF 191 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRA-LNY--------------------TTEQILDLFF 225 E + +D + V++DR+RK+P TI+LRA L + E+IL+LF Sbjct: 192 ETNKRDVISVKVDRKRKIPVTILLRAVLGWRANPDGSGQWAPDNELDQRGRDEEILELFA 251 Query: 226 EKVIFE-------------IRDNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRIT 270 + + +EL G+ + D + R Sbjct: 252 HLETGDHQYIKATLDKDPARHAKEALLELYKRLRPGDPPTLDNARNLIEALLFNPRRYDL 311 Query: 271 ARHIRQLEKDDV 282 +R R ++ Sbjct: 312 SRVGRYKLNKNL 323 >UniRef50_D1CFB9 DNA-directed RNA polymerase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB9_THET1 Length = 1203 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 368/1241 (29%), Positives = 549/1241 (44%), Gaps = 201/1241 (16%) Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDL-FFEKVIFEI 232 ++ + G ++ FD D+ R R Y+ + K EI Sbjct: 62 NPVVDFTGRLMELRFDKPDSGQF-FGEPRYTEKECRERDFTYSAPLKVKATLLVKETGEI 120 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 ++ ++ + P L E +F I +V V + R + + + + + I Sbjct: 121 KEQEIFLGDFP--LMTEKGTFVINGAERVVVSQLVRSPGVYFKDVFDEASGKTLWTAKLI 178 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG--HKRIETLFTNDLD-------- 342 + ++ + L + + + + L + + Sbjct: 179 PNRGAWLEFETSNKDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVEAEGDMGPTTPGTDEW 238 Query: 343 ------------HGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFF 390 ++ T+ DPT + ALVE+YR +RPG+PP E A +L L F Sbjct: 239 LWALYGKVSRDGRYQNLAATIERDPTKNSQEALVELYRRLRPGDPPNPENARTLLRQLLF 298 Query: 391 SEDRYDLSAVGRMKFNRSL--------------------LREEIEGSGILSKDDIIDVMK 430 RYDL+ VGR K R R E ++ D+I+++ Sbjct: 299 DPRRYDLARVGRYKLTRKWEQLREVVARSNGPTFDFEIDSRVYGERLRTITGRDLINIVG 358 Query: 431 KLIDIRN----GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT 486 LI + N + E DDIDHLGNRR+R+VGE+ +NQFRVGL+R+ER +KER+S+ D ++ Sbjct: 359 NLIRLNNLPPGSEEEGDDIDHLGNRRVRAVGELIQNQFRVGLLRMERVIKERMSIQDAES 418 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 P ++IN +P+ AA++EFFG SQLSQFMDQ N LSEI HKRR+SALGPGGL+R+RAG + Sbjct: 419 ATPNNLINIRPVVAAMREFFGGSQLSQFMDQVNALSEINHKRRLSALGPGGLSRDRAGLD 478 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 VRDVHP+HYGR+CPIETPEGPNIGLI L+ YA+ NEYGF+ETPYRKV V D I + Sbjct: 479 VRDVHPSHYGRICPIETPEGPNIGLIGQLATYARINEYGFIETPYRKVVKSVPGDSIDAM 538 Query: 607 SAIEEGNYVIAQANSNLDEEG-----HFVEDLVTC---------RSKGESSLFSRDQVDY 652 ++ + G E +V R E S D+ D Sbjct: 539 VGHITREPIMDSNGQEVVPVGTEITREVAEKIVALGLDEIKVKPRVLNEVEYLSADREDL 598 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGAN-MQRQAVPTLRADKPLVGTGMERAVAVD 711 V+ FLE RA + + + + V Sbjct: 599 FTVAQANSPLDERGY--FLEDRVEARASIRLRRGGTEFMIVPVDEVDYVDA--------- 647 Query: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 S V+ ++ +++ + M + P V Sbjct: 648 SPKQVVSVASSLIPFLEHDDANRALMGANMQRQAVP---------------LLVPDSPVV 692 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 G + +++++ + ++ Sbjct: 693 GTGVEAQVARDSGQ------------------------------VVIAKA---DGIVRSV 719 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 + + D G V + L++ IV G + G I + Sbjct: 720 TAERIVVEEDD---GNLRTYELEKFVRTNQDTLLNQRPIVNKGDRIYAGQI-IADSASTS 775 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 ++ + +L A + + +D+ L +S ++ V+T +EK + ++ Sbjct: 776 NGEIALGQNVLVAFMPWEGGNFEDAVL-----ISERLVRDDVYTSIHIEKYEVEARDTKL 830 Query: 952 QLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 ++ +D+ +E I+ G + +LV + + +R L Sbjct: 831 GPEEITRDIPNVGEEALANLDERGIVYVGAEVKPNDILVGKVTPKGETEMTAEERLLRAI 890 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 +++ + + L + K+ + DDL GV ++V+V +A KR+I Sbjct: 891 FSEKARDVRDTSLRVPNGVHGQVIDVKVFTRVE----NDDLPAGVNQMVRVMIAQKRKIS 946 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK+AGRHGNKGVIS+I PIEDMP+ +G PVD++LNP+GVPSRMN+GQILE HLG AA Sbjct: 947 EGDKVAGRHGNKGVISRILPIEDMPFLPDGRPVDVILNPIGVPSRMNLGQILECHLGWAA 1006 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G K+ + ++E ++RA + D R G Sbjct: 1007 STLGFKVACPVFDGASEEMIKEELRRAGLPEDGKIELYDG---------------RTGEK 1051 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 +PV VG MY++KL HLV+D Sbjct: 1052 FD---------------------------------------QPVAVGVMYIMKLAHLVED 1072 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD GR Sbjct: 1073 KIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDTVGR 1132 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + Y+ IV G G+PESF VL+KE++SLG+++E+ +E Sbjct: 1133 VRTYEAIVKGEPISGAGVPESFKVLMKELQSLGLSVEVLNE 1173 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 405/1139 (35%), Positives = 574/1139 (50%), Gaps = 171/1139 (15%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 + K RK + + P +++P L+ IQLDSF F + GL+ F + P+ Sbjct: 13 AQTRPASKVQRKSYARIPDTIEMPNLIQIQLDSFNWF------KEEGLQELFDEINPVVD 66 Query: 62 YSGN-SELQYVSYR----LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 ++G EL++ GEP + +EC+ R TYSAPL+VK L++ E + Sbjct: 67 FTGRLMELRFDKPDSGQFFGEPRYTEKECRERDFTYSAPLKVKATLLVKE-------TGE 119 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKEQE+++G+ PLMT+ GTFVING ERV+VSQL RSPGV+F + +SGK L+ A++ Sbjct: 120 IKEQEIFLGDFPLMTEKGTFVINGAERVVVSQLVRSPGVYFKDVFDE--ASGKTLWTAKL 177 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IP RG+WL+FE KD L+V++DR+RK+P T++LRA+ ++++ + ++ Sbjct: 178 IPNRGAWLEFETSNKDVLYVKVDRKRKIPVTVLLRAVAAIDSEVVEAEGDMGPTTPGTDE 237 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 L + R + + + R+L D P + Sbjct: 238 WLWALYGKVSRDGRYQNLAATIERDPTKNSQEALVELYRRLRPGD------PPNPENART 291 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 + + + + + +L + +N I + + Sbjct: 292 LLRQLLFDPRRYDLARVGRYKLTRKWEQLREV------VARSNGPTFDFEIDSRVYGERL 345 Query: 357 NDR--LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 + + ++R P E + + + + + +F LL Sbjct: 346 RTITGRDLINIVGNLIRLNNLPPGSEEEGDDIDHLGNRRVRAVGELIQNQFRVGLL---- 401 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 ++ + + + D + + + Sbjct: 402 ----------------RMERVIKERMSIQDAESA------TPNNLINI------------ 427 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 +P+ AA++EFFG SQLSQFMDQ N LSEI HKRR+SALG Sbjct: 428 ---------------------RPVVAAMREFFGGSQLSQFMDQVNALSEINHKRRLSALG 466 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594 PGGL+R+RAG +VRDVHP+HYGR+CPIETPEGPNIGLI L+ YA+ NEYGF+ETPYRKV Sbjct: 467 PGGLSRDRAGLDVRDVHPSHYGRICPIETPEGPNIGLIGQLATYARINEYGFIETPYRKV 526 Query: 595 TDG-----------------------------------------------------VVTD 601 V + Sbjct: 527 VKSVPGDSIDAMVGHITREPIMDSNGQEVVPVGTEITREVAEKIVALGLDEIKVKPRVLN 586 Query: 602 EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR-----SKG--ESSLFSRDQVDYMD 654 E+ YLSA E + +AQANS LDE G+F+ED V R +G E + D+VDY+D Sbjct: 587 EVEYLSADREDLFTVAQANSPLDERGYFLEDRVEARASIRLRRGGTEFMIVPVDEVDYVD 646 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 S +QVVSV +SLIPFLEHDDANRALMGANMQRQAVP L D P+VGTG+E VA DSG Sbjct: 647 ASPKQVVSVASSLIPFLEHDDANRALMGANMQRQAVPLLVPDSPVVGTGVEAQVARDSGQ 706 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 +AK G+V+ V A RIV++ ++ + Y L K+ R+NQ+T +NQ P V+ G Sbjct: 707 VVIAKADGIVRSVTAERIVVEEDDGNLR-------TYELEKFVRTNQDTLLNQRPIVNKG 759 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + + G ++AD ST GE+ALGQN+ VAFMPW G NFED++L+SER+V++D +T+IHI+ Sbjct: 760 DRIYAGQIIADSASTSNGEIALGQNVLVAFMPWEGGNFEDAVLISERLVRDDVYTSIHIE 819 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 + +RDTKLGPEEIT DIPNVGE AL+ LDE GIVY+GAEV DILVGKVTPKGET+ Sbjct: 820 KYEVEARDTKLGPEEITRDIPNVGEEALANLDERGIVYVGAEVKPNDILVGKVTPKGETE 879 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK-RALEIEEMQL 953 +T EE+LLRAIF EKA DV+D+SLRVPNGV G VIDV+VFTR + ++ + + Sbjct: 880 MTAEERLLRAIFSEKARDVRDTSLRVPNGVHGQVIDVKVFTRVENDDLPAGVNQMVRVMI 939 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ 1013 Q +K + G I +L + D P D L + + N + Sbjct: 940 AQKRKISEGDKVAGRHGNKGVISRILPIEDMPF-LPDGRPVDVILN-PIGVPSRMNLGQI 997 Query: 1014 LAEQYDELKHEFEKKLEAKRRKITQGDDL-----APGVLKIVKVYLAVKRRIQPGDKMA 1067 L K+ + + G+ + K+ L R G+K Sbjct: 998 LECHLGWAASTLGFKVACPVFDGASEEMIKEELRRAGLPEDGKIELYDGRT---GEKFD 1053 >UniRef50_Q0SNB8 DNA-directed RNA polymerase subunit beta n=22 Tax=Spirochaetaceae RepID=RPOB_BORAP Length = 1155 Score = 752 bits (1942), Expect = 0.0, Method: Composition-based stats. Identities = 449/1051 (42%), Positives = 641/1051 (60%), Gaps = 68/1051 (6%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG------QYGLEAAFRSVFPIQSY 62 KR+ G+ ++LD+P L+ IQL+S++KF++ D GLE+ FR++FPI+S Sbjct: 3 KRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKNKKPLLNEGLESVFRNIFPIKSG 62 Query: 63 SGNSELQYVSYRLGEPV--FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120 +G+ L+Y Y + F +EC+ +G +Y A L+V+L L T +I+++ Sbjct: 63 NGDVALEYERYYIENDTLNFTEKECKRKGQSYEAVLKVRLNLQF-------LTTGEIRQK 115 Query: 121 EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180 +VYMG IPLMT+ GTF+ING ERVIVSQ+HRSPGV F +K LY+ARIIPYR Sbjct: 116 DVYMGTIPLMTERGTFIINGAERVIVSQIHRSPGVVFYKEKD--------LYSARIIPYR 167 Query: 181 GSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQ 238 GSWL+FE D KD L+V+IDR++++ T+ LRAL + T E+I++ F+ ++ + Sbjct: 168 GSWLEFEIDSKKDYLYVKIDRKKRILITLFLRALGFDTREKIIETFYNIKKIKVEEGT-- 225 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 L G+ + I +Y G +IT + + ++ V IE+ V Sbjct: 226 ----KRDLPGQYLAKSINIRENMYYRAGDKITLQDVEDFLQNGVNEIELVDFDGYNDVSG 281 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 K ++ + D L Sbjct: 282 KYFVSSNVILNCLE-----KEDAFFALKDGS-------------------------KELP 311 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + S ++ +Y + PGEP + + AE+ + +FFSE RYDL VGR K ++ + + Sbjct: 312 KESVMLAVYGALFPGEPISIDNAENDLKTIFFSERRYDLGRVGRYKLSKKFGSD-DLSTS 370 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 +L+ DDI++ + L+ I G +DDIDHLGNRR+RSVGE+ N ++ + RVE+ K+R Sbjct: 371 VLTMDDIVNTISHLLRIYEGHDILDDIDHLGNRRVRSVGELLTNIYKGAMSRVEKIAKDR 430 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 +S ++ L PQ++I+ KPI +AVKEFF +SQLSQFMDQ NPL+E+THKRR++ALGPGGL Sbjct: 431 MSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKRRLNALGPGGL 490 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 +R+RAGFEVRDVH THYGR+CPIETPEGPNIGLI SL+ Y++ N+YGFLETPYRKV +G Sbjct: 491 SRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYSRVNDYGFLETPYRKVVNGE 550 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQ 658 VT+E+ YLSAI+E IAQAN+ + +G ++EDLV+ R G+ + + +DYMDVS + Sbjct: 551 VTNELEYLSAIDEEKKCIAQANAAFNSDGKYLEDLVSVRISGDYTTTNPKNIDYMDVSPR 610 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++SV ++LIPFLEH+DANRALMG+NMQRQAVP L P+VGTGME VA DSGV A Sbjct: 611 QLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPKPPIVGTGMESVVAKDSGVVVKA 670 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 KR G V +++IV+K E E +D Y++ KY R+NQ+TC NQ V G+ VE Sbjct: 671 KRSGEVILATSNKIVVKPFESENVK---DLDEYHIVKYERTNQDTCFNQSVLVKEGQKVE 727 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 RG+++ADGP+T GELALG N+ + +PWNG+N+ED+IL+S+R+V+ED +T+IHI+E + Sbjct: 728 RGEIIADGPATRYGELALGNNLLLGVIPWNGFNYEDAILISDRIVKEDLYTSIHIKEFSI 787 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R+TKLGPE++T DIPNV E L+KLDE+GI+ IG V GDILVGKVTPK E +TPE Sbjct: 788 EVRETKLGPEKVTGDIPNVSEKILNKLDENGIIRIGTYVKPGDILVGKVTPKSEGDITPE 847 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG-VEKDKRALEIEEMQLKQAK 957 +LL +IFGEKA DVK++SL+VP+G GTVIDVQ T++ EI ++ + + + Sbjct: 848 FRLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKEDVGNLSPGVEEILKVYVAKKR 907 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 K + G + +L + D P D L L + N + + Q Sbjct: 908 KLKEGDKMAGRHGNKGVVAKILPVEDMPY-LADGTPLDICLN-PLGVPSRMNIGQLMESQ 965 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + + + + + K Sbjct: 966 LGLAGKYLSESYNVPVFESATNEQIQEKLKK 996 >UniRef50_Q9TL06 DNA-directed RNA polymerase subunit beta n=1 Tax=Nephroselmis olivacea RepID=RPOB_NEPOL Length = 1109 Score = 741 bits (1913), Expect = 0.0, Method: Composition-based stats. Identities = 306/1170 (26%), Positives = 507/1170 (43%), Gaps = 170/1170 (14%) Query: 200 RRRKLPA-TIILRALNYTTEQILDLFFEK---VIFEIRDNKLQMELVPERLRGETASFDI 255 +R K+ + +A +Y+ +++ + E + + M +P L F I Sbjct: 63 KRPKVSIQEAVYQATSYSAALYVNVETNQSNLGTQETQIQSVWMGDIP--LMTSRGHFII 120 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + +V V + R + +++ + + I+ + + G + + Sbjct: 121 NGSSRVVVNQIVRSPGIYFKEMIDQKHRRM-FQASIISNRGSWVRLETDVDGMIWVRMDK 179 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHG--PYISETLRVDPTNDRL---------SALV 364 + +L L G + + + + L D++ AL Sbjct: 180 AKKISILIVLEAMGLSKKTIFRSLKSPEFLFKALQQLLAKKRWQDKVYELIPQSTTDALF 239 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 +Y + P +P A + RYD+ VGR+K N+ L E L D Sbjct: 240 HLYTKLSPDKPGNTLTARRVLYEKLMDAKRYDVGLVGRVKLNKKLKLPVPEHVHTLRPVD 299 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL 484 + LI + G+G+VDDIDHL NRR+R GE+ ++Q R+GL R+ER ++ R+S Sbjct: 300 FLAATDYLIGLEYGRGQVDDIDHLKNRRVRCAGELIQSQLRIGLNRLERTMQGRISRP-G 358 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 + ++N KP+ AA++EFFGS+ LSQFMDQ NPL+E+THKRR+S+LGPGGL+++RAG Sbjct: 359 ELPGMSSLMNPKPVMAALREFFGSNPLSQFMDQTNPLAELTHKRRLSSLGPGGLSQDRAG 418 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI- 603 VR++HP+ YGR+CPIETPEGPN GLI S++ YA+ N+YG LE P+ +V +G V E Sbjct: 419 MAVREIHPSQYGRICPIETPEGPNAGLIGSMATYARLNQYGGLECPFYQVVEGKVLYEFG 478 Query: 604 -HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 +L+A +E + + ++ + V+ + Sbjct: 479 PIFLTAEQEDQVTVVAGD--------ILDQRKLM----------------VAVAEGRDPL 514 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 A + D + + G+ + + ++ Sbjct: 515 DPA--VRPTLPDRP-------------LILRSRQEFHTGSFRDVNYVGIAPTQMISVATS 559 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 ++ +++ + M P + P+ + Sbjct: 560 LIPFLEHDDANRALMGSNMQRQAV----------------------PLLKTEAPIIGTGL 597 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 A + G + V ++ D+ + + + + Sbjct: 598 EAQVAADAGGVVQSPFEGIVVYV--------DATRIVVSTSKSKLALSKKRKIHESNVFL 649 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 + + + I+ + V GD L+ + Q+ + LL Sbjct: 650 QVYQ-----------RSNQGTCIHQRPIIPLHTPVIRGD-LLADGSSTSGGQIALGKNLL 697 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS- 961 A + + +D+ L +S +I ++T +E+ + + ++ ++ K + Sbjct: 698 VAYMPWEGYNFEDAIL-----ISERLIYDDLYTSLHIERYEVETQHTKLGPEEITKSIVH 752 Query: 962 -----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 +E I+ G + VL+ E+ + P R + K + Sbjct: 753 ETDDKLPYRWLDERGIVMRGAWVEPGDVLIGKITPKEEKELTPELRLVYAIFGKRPKGFR 812 Query: 1011 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 L + ++ K+V VY+ +R+IQ GDKMAGRH Sbjct: 813 DTSLRVPQGVRGRVVDVRMIRDEDT------------KVVHVYVCQQRQIQVGDKMAGRH 860 Query: 1071 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 1130 GNKG++S+I P +DMPY ++GTPVD+VLNPLGVPSRMN+GQ+ E LG+A + +G ++ Sbjct: 861 GNKGIVSRIVPRQDMPYLQDGTPVDMVLNPLGVPSRMNVGQVFECLLGLAGQRLGQQLKV 920 Query: 1131 MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 + A+ + A Sbjct: 921 RAFDEMYGAEASRHLVYNKLHEAS------------------------------------ 944 Query: 1191 KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 E+ L D G+ RL DGRTG+ F++ VT+G YMLKL H VDDK+HAR+TG Sbjct: 945 ---EVTGHHWLFDPNHPGKSRLIDGRTGDMFDQAVTIGQAYMLKLIHQVDDKIHARATGP 1001 Query: 1251 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 YSL+TQQPLGG+++ GGQR GEMEVWA E +GAAYTLQE+LTVKSDD+ GR ++ +V Sbjct: 1002 YSLITQQPLGGRSKRGGQRLGEMEVWAFEGFGAAYTLQELLTVKSDDMQGRNEIMSAMVQ 1061 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 G E G PESF V+++E+++L ++I + Sbjct: 1062 GRQLPEMGTPESFKVMIRELQALCLDIGIY 1091 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 108/225 (48%), Gaps = 16/225 (7%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + RKD P +P L+SIQ DSF F+E+ GL V P+ Sbjct: 3 QNLQRKDSQWTP--FILPDLISIQRDSFLLFLER------GLATELSHVTPLTGSHFRIT 54 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L YRL P +QE + +YSA L V + ++ + Q V+MG+I Sbjct: 55 LCSHGYRLKRPKVSIQEAVYQATSYSAALYVNVE-----TNQSNLGTQETQIQSVWMGDI 109 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT G F+ING+ RV+V+Q+ RSPG++F + H + ++ A II RGSW+ E Sbjct: 110 PLMTSRGHFIINGSSRVVVNQIVRSPGIYFKEMIDQKH---RRMFQASIISNRGSWVRLE 166 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 D ++VR+D+ +K+ I+L A+ + + I Sbjct: 167 TDVDGMIWVRMDKAKKISILIVLEAMGLSKKTIFRSLKSPEFLFK 211 >UniRef50_P08518 DNA-directed RNA polymerase II subunit RPB2 n=4530 Tax=cellular organisms RepID=RPB2_YEAST Length = 1224 Score = 735 bits (1898), Expect = 0.0, Method: Composition-based stats. Identities = 216/1405 (15%), Positives = 424/1405 (30%), Gaps = 271/1405 (19%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 + + L+S QLDSF +F++ + I Sbjct: 20 DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQD-------------IICED 66 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 L+ +L + E+ ++ E+ Sbjct: 67 STLILE-------------------------------QLAQHTTESDNI----SRKYEIS 91 Query: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW 183 G+I +T +G + Q R + + S K Y A +P R Sbjct: 92 FGKI-YVTKPMVNESDGVTHALYPQEARLRNLTYSSGL--FVDVKKRTYEAIDVPGRELK 148 Query: 184 LDFEFDPK-DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 + + D+ +LP + + + DL+ K Sbjct: 149 YELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGG------- 201 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 F I + KV + + R + + V A + ++ Sbjct: 202 ---------YFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFIS 252 Query: 303 DESTGELICA-----------ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP-----Y 346 ++ + ++ G + + Sbjct: 253 TLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLE 312 Query: 347 ISETLRVDP--TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 + + D DR +AL I R E + + L + ++ Sbjct: 313 MLKPCVEDGFVIQDRETALDFIGRR----GTALGIKKEKRIQYAKDILQKEFLPHITQL- 367 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 EG + ++ +L+ + + DD DH G +R+ G + F Sbjct: 368 ----------EGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLF 417 Query: 465 RVGLVRVERAVKERLSLGDLD--TLMPQDMINAKPISAAVKEFFGSSQL----------- 511 + ++ + + + + + INAK I++ +K + Sbjct: 418 KTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRA 477 Query: 512 --SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 SQ +++ S ++H RR + + R+ + R +H TH+G VCP ETPEG Sbjct: 478 GVSQVLNRYTYSSTLSHLRRTNT----PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQAC 533 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH- 628 GL+ +LS+ + + G P + + + + N Sbjct: 534 GLVKNLSLMSCISV-GTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRN 592 Query: 629 ---FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 +E L T R KG+ + + + ++ + + L + + +L + Sbjct: 593 PARLMETLRTLRRKGDINPEVS-MIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKEL 651 Query: 686 ----QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR---IVIKVNE 738 A + + G G E V+ + G+V+Y+DA I+I + Sbjct: 652 KVRKGHIAKLMATEYQDIEG-GFE---DVEEYTWSSLLNEGLVEYIDAEEEESILIAMQP 707 Query: 739 DEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ 798 +++ P EA + + ++ + + PS LG Sbjct: 708 EDLEPAEANEE-----------NDLDVDPAKRIRVSHHATTFTHCEIHPSMILG------ 750 Query: 799 NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVG 858 + + +P+ +N + ++ + + R + P Sbjct: 751 -VAASIIPFPDHNQSPRNTYQSAMGKQ--AMGVFLTNYNV--RMDTMANILYYPQKPLGT 805 Query: 859 EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSL 918 A+ L + + + AI + +DS + Sbjct: 806 TRAMEYLKFRELPA-------------------------GQNAIVAIACYSGYNQEDSMI 840 Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKR----ALEIEEMQLKQAKKDLSEELQILEAGLFSR 974 + + + F ++ K E+ Q + L+ Sbjct: 841 MNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIA 900 Query: 975 IRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR 1034 + V K + D EE + +++ + + Sbjct: 901 PGVRVSGEDVIIGKTTPISPDE--------EELGQRTAYHSKRDASTPLRSTENGIVDQV 952 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPV 1094 +T D LK VKV + + Q GDK A RHG KG I EDMP+ G Sbjct: 953 LVTTNQD----GLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVP 1008 Query: 1095 DIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGAD 1154 D+++NP +PSRM + ++E L A G++ +A V + + ++ Sbjct: 1009 DLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRG 1068 Query: 1155 VRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYD 1214 + +G+ + Sbjct: 1069 FEVMYNG--------------------------------------------HTGKKLM-- 1082 Query: 1215 GRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 + G Y +L H+VDDK+HAR+ G ++T+QP+ G+++ GG RFGEME Sbjct: 1083 --------AQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEME 1134 Query: 1275 VWALEAYGAAYTLQEMLTVKSD----DVNGRTKM-------------YKNIVDGNHQMEP 1317 + A+GAA L+E L SD + G + K + + Sbjct: 1135 RDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQI 1194 Query: 1318 GMPESFNVLLKEIRSLGINIELEDE 1342 +P + +L +E+ ++ I L + Sbjct: 1195 HIPYAAKLLFQELMAMNITPRLYTD 1219 >UniRef50_Q1J0P6 DNA-directed RNA polymerase subunit beta n=3 Tax=Deinococcus RepID=RPOB_DEIGD Length = 1152 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 367/1186 (30%), Positives = 555/1186 (46%), Gaps = 158/1186 (13%) Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDL-FFEKVIFEIRDNKLQMELVPERLRGET 250 D L R+ P + L Y L K I+++++ + +P L + Sbjct: 75 DFLEYRLGEPPYTPEECREKDLTYQAPLYAKLQLIHKDSGLIKEDQVFLGDLP--LMTDD 132 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 SF I +V + + R + K K+ + + + E G ++ Sbjct: 133 GSFVINGADRVVISQIHRSPGVYFTSSYKGIKKMYTAAIIPMPKRGPW--IELEFNGGVL 190 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + + L G+ L + P + AL+ ++ ++ Sbjct: 191 EMKVNKRKFPVSLLLRVLGY-DDAQLKALFTEFDPAAELPEDKSAGMNPDEALLRLFTVL 249 Query: 371 RPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD------ 424 RPG+PP R+ A L RYDL GR K N L + +L+ +D Sbjct: 250 RPGDPPKRDKAIQYLYGLLADPKRYDLGEPGRFKMNTKLGTR-RQDRTLLTFEDGRFGDA 308 Query: 425 -IIDVMKKLIDIRNGKGEV-----------------DDIDHLGNRRIRSVGEMAENQFRV 466 ++D ++ L+ ++ G V DDIDHLGNRR+R+VGE+ +Q RV Sbjct: 309 GLVDTIRYLMALQQGLETVTMGADEDGVAIEVPVTEDDIDHLGNRRVRTVGELLADQLRV 368 Query: 467 GLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITH 526 G+ R+ R V+ER+ LG+ D P ++N +PI AA++EFFG SQLSQF DQ NPLS++ H Sbjct: 369 GMGRMARGVRERMLLGNPDAATPTKLVNNRPIVAAMREFFGRSQLSQFKDQTNPLSDLRH 428 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 KRRISALGPGGLTRERAGF+VRDVH THYGR+CPIETPEG NIGLI+SLS YA+ N+ GF Sbjct: 429 KRRISALGPGGLTRERAGFDVRDVHRTHYGRICPIETPEGANIGLISSLSSYAKVNDLGF 488 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 +E PYR+V DG VTD+ + +++++ + Sbjct: 489 IEAPYRRVVDGRVTDD-------------VVYMTADIEDRYVIAQA-------------- 521 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 S A V + P++ E Sbjct: 522 --------NSPLNPDGTFAEER---------------------VLARKKGDPMLYAPTEV 552 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 S V+ ++ +++ + M + R++ Sbjct: 553 DFMDVSPKQIVSINTSLIPFLEHDDANRALMGSNMQSQAVPL--------VRAD------ 598 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 P V G V+ D ++ + ++ G+ V D+ + + ++ Sbjct: 599 -SPAVGTG---VEERVVTDSGTSVISDV-TGRVTYV-----------DARAIQVTLTEDA 642 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 + G + + LD+ IV +G EV G + + Sbjct: 643 PQIGLV------------KGNVRTFELVRFTRSNQGTNLDQHPIVSVGDEVVPGQV-IAD 689 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL 946 + +L + + AI + +D+ +S ++ +T +EKD+ Sbjct: 690 GPASDQGRLALGQNITIAIMPFDGFNFEDAI-----CISEGLVRKDFYTSVHIEKDEIEA 744 Query: 947 EIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 ++ ++ +D+ +E I+ G + +LV + + P +R Sbjct: 745 RDTKLGPEKITRDIPGLSEAALRDLDEDGIVRVGAEVKPGDILVGKTSFKGESEPTPEER 804 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 L ++ ++ + L Q + + + R+ +G DL PGV ++V+VY+A Sbjct: 805 LLRSIFGEKAREVKDTSLRVQSGQGGIVVK---TVRFRRGDEGVDLKPGVREMVRVYVAQ 861 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 KR++Q GDK+A RHGNKGV+SKI P EDMPY E+GTPVD+V NPLGVPSRMN+GQILETH Sbjct: 862 KRQLQVGDKVANRHGNKGVVSKILPPEDMPYLEDGTPVDLVFNPLGVPSRMNLGQILETH 921 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 LG A+ G K + ++E ++ A ++++ D D+ + + Sbjct: 922 LGEVARLTGQKFVTPVFDSATEEAIKEMLEVAAAER--LQRRKDEGFELDKREQEVLDRA 979 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 K I+ P D A L +G+ LYDGRTGE PV VG MY++KL Sbjct: 980 GKLGVISPPNGDYAAAQ--------MQLARTGKSVLYDGRTGEPISGPVVVGTMYVMKLY 1031 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V+DK+HARSTG YSL+TQQPLGGKAQFGGQRFGEMEVWALEAYGAA+TLQEMLT+KSD Sbjct: 1032 HMVEDKLHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTIKSD 1091 Query: 1297 DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 D++GR Y++IV G +PESF VL+KE+ SLG+++E+ D Sbjct: 1092 DIDGRDAAYQSIVKGEEVSGSTIPESFKVLVKELHSLGLDVEVLDN 1137 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 141/234 (60%), Gaps = 25/234 (10%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV 56 M + + + R FG+ +V+ +P L +Q++SF+ F++ D GL++AFR V Sbjct: 1 MSLTDQKPRIER--FGEITEVIPLPNLTEVQVNSFKAFLQADKAPDERDDTGLQSAFREV 58 Query: 57 FPI-QSYSGN---SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 FPI ++ G L ++ YRLGEP + +EC+ + +TY APL KL+L+ + Sbjct: 59 FPIDETEKGRSTGLVLDFLEYRLGEPPYTPEECREKDLTYQAPLYAKLQLIHKD------ 112 Query: 113 TVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 IKE +V++G++PLMTD+G+FVING +RV++SQ+HRSPGV+F S K +Y Sbjct: 113 -SGLIKEDQVFLGDLPLMTDDGSFVINGADRVVISQIHRSPGVYFTSSYKGI----KKMY 167 Query: 173 NARIIPY--RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 A IIP RG W++ EF+ L ++++ +RK P +++LR L Y Q+ LF Sbjct: 168 TAAIIPMPKRGPWIELEFNG-GVLEMKVN-KRKFPVSLLLRVLGYDDAQLKALF 219 >UniRef50_Q8EWX1 DNA-directed RNA polymerase subunit beta n=1 Tax=Mycoplasma penetrans RepID=RPOB_MYCPE Length = 1375 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 460/1414 (32%), Positives = 695/1414 (49%), Gaps = 166/1414 (11%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 K +R+D+ K + + P LL++Q ++F KFI+ + LE +S+FPI+S G Sbjct: 12 SKYVLRRDYSKIEKNFNEPNLLNLQKNAFHKFIDTE------LEGTIKSIFPIKSIGGRY 65 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE-----QE 121 L+Y+ +L +P +E + G TY PL V L +V E + T K K Sbjct: 66 SLEYIGMKLEKPKRSEKEARNEGKTYDRPLYVDLAIVDNESGEVKKTTKSSKNKASNTDG 125 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL----YNARII 177 ++ IP++T+ GTF++NG E+ ++SQ+ RSPG + + S+ + Y I+ Sbjct: 126 IFFASIPMITEKGTFIVNGIEKFVISQIVRSPGAYILTKSQIKLSNSRKRIQEGYICEIL 185 Query: 178 PYRGSWLDFEFDPKDNLFVRIDRRR-------KLPATIILRALNYTTEQILDLFFEKVIF 230 P +G+ L F F ++ F+++ R +P T L+AL E+IL++F Sbjct: 186 PAKGT-LFFIFMAENKDFIQVMFRDAIGESTHTIPITAFLKALGLNKEEILNIFANHKSI 244 Query: 231 EIRDNKLQMELVP-------ERLRGETASFDIEANGKVYVEKGRRITARHIRQLE----- 278 + + LR S D + V + + + Sbjct: 245 KNSLDNEIYNEKDVFETDELINLRKNLNSSDSNRSYGVDTKLRELFKKYSSLKSQLEAEG 304 Query: 279 ---KDDVKLIEVPVEYIAGK-----VVAKDYIDESTGELICAANMELSLDLLAKLSQSGH 330 + +L EV I+ K V+ ++ +N E + + + Sbjct: 305 KNAEKQKELNEVINNIISEKAAKDLVINLSISTKNIDSKFRLSNKETTYQSIIYNHFFSN 364 Query: 331 KRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR------------MMRPGEPPTR 378 K + + + R+ + + + T+ Sbjct: 365 KSFDLSKAGRFKMARKMRLSERLYQRVLAEDLKDINGKVVIKKNTLIQKHELDTIKQLTK 424 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMK-------------FNRSLLREEIEGSGILSKDDI 425 E + N+ E ++ V + + F + + LS DI Sbjct: 425 EGKLGIVHNVNLDERISKMANVVKYEKINVYQDNDSQDEFIPIIGTDTSLDKPTLSISDI 484 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL- 484 + + +I++ G DDIDHLGN+R++ + E+ + + + GLVR+E+ + ++L++ D Sbjct: 485 LSITSYVINLDYDIGFYDDIDHLGNKRLKLIDELLKTRAQAGLVRIEKFINDKLAIADGA 544 Query: 485 -------------DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 +L + +IN KP + KEFF S QL+QF+DQ NPL+E+T+KRRIS Sbjct: 545 NKSQEQSEEQEPKKSLTVKSIINTKPFQISFKEFFNSHQLTQFLDQQNPLAELTNKRRIS 604 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 A+GPGG++RE ++RDVH +HYG++CPIETPEG NIGLI SL+ YA T+E GFL TPY Sbjct: 605 AMGPGGISREDPNLDIRDVHYSHYGKICPIETPEGMNIGLIMSLATYASTDENGFLITPY 664 Query: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 R V +GV+TDEI +L+A+ E Y+IA +N N+++ F ED V CR + F VD Sbjct: 665 RIVKNGVITDEIRWLTALSEDEYIIACSNLNVEKNK-FKEDKVLCRYRSSWEFFDVKDVD 723 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 ++D+S +QVVS+ AS IPFLE+DDANRALMGANMQRQA P + P+VGTG E +A D Sbjct: 724 FIDISPKQVVSIAASSIPFLENDDANRALMGANMQRQATPLISPIAPIVGTGNEYKIAHD 783 Query: 712 SG--VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 SG ++ G V YVD I IK +E +Y LTK+ +SNQNTC NQ+P Sbjct: 784 SGMAAVYDGEKDGTVSYVDGGTIKIKSGSEE--------KVYELTKFNKSNQNTCNNQVP 835 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 VS+GE V +G +ADGP+ GELALGQN+ VAF W+GYN+ED+I++S+R+ ED FT Sbjct: 836 IVSVGEKVTKGTTIADGPAMSNGELALGQNVLVAFTTWSGYNYEDAIILSKRLFMEDIFT 895 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 +IHI E + TK G EEIT DIPNV E++ LD+ GI+ +GAEV GD+LVGK++P Sbjct: 896 SIHIVEYSVDCLKTKNGDEEITRDIPNVSESSKKYLDDEGIIMVGAEVKEGDVLVGKISP 955 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT-RDGVEKDKRALEI 948 KG+ +LT EEKLL+AIFG+K+ + K++SL+VP+G GTV V+ F D E + +E Sbjct: 956 KGQVELTSEEKLLQAIFGDKSKNHKETSLKVPHGGEGTVAMVKRFKVEDDYELNADVIEQ 1015 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 ++ + Q +K + G I ++ + D D L L + Sbjct: 1016 IKVYVVQKRKIQIGDKMAGRHGNKGIISKIVPVEDMPH-LEDGTTIDIMLN-PLGVPSRM 1073 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 N + L + +K ++ A ++ R + K Sbjct: 1074 NIGQILELHLGLAMKKLT---LSKVLELYYDKKPASDFSLWFGIHEEASRNLI---KNLE 1127 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 + N+ I K + + + + SR G++ + + K Sbjct: 1128 KILNEKQI-KSLDQANKEFTDFDLSL--------ALSR----------SGISREKLIYKT 1168 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 + + L+E + A D E NL G FD Sbjct: 1169 ATPVFEGVNRTDLKEAMTEAGI---------DPINGKLGEGKSGKFNLIDGRT--GEYFD 1217 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 G I +LK L+H+VDDK+H+R+ Sbjct: 1218 GEVSVGIMYMLK----------------------------------LDHMVDDKIHSRAV 1243 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNI 1308 G YS +TQQPLGGK+Q GGQRFGEMEVWALEAYGAA+ L+E+LT+KSDDV GR Y I Sbjct: 1244 GPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAHNLRELLTIKSDDVKGRNNTYNAI 1303 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + G E G+PESF +L K+++ LG+ + + E Sbjct: 1304 IKGKPIPESGLPESFKLLTKQLQGLGLQVSITKE 1337 >UniRef50_P30876 DNA-directed RNA polymerase II subunit RPB2 n=128 Tax=Eukaryota RepID=RPB2_HUMAN Length = 1174 Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats. Identities = 202/1389 (14%), Positives = 386/1389 (27%), Gaps = 306/1389 (22%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + D L+ QLDSF +FI+ + Q SG E Sbjct: 27 WIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVE------- 79 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 P + ++ ++ L +G P+M Sbjct: 80 -EPPRYLLK-------------FEQIYLSKPTHWERDGAPS------------PMM---- 109 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 R + + + + + + + Sbjct: 110 ------------PNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFI-------- 149 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 K+P + DL + E F Sbjct: 150 -------GKIPIMLRSTYCLLNGLTDRDL----------------CELNECPLDPGGYFI 186 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDD-----------VKLIEVPVEYIAGKVVAKDYID 303 I + KV + + + T +KD ++ P I ++A+ Sbjct: 187 INGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQG 246 Query: 304 EST-----GELICAANMELSLDLLAKLSQSGHKRIETLFTN------DLDHGPYISETLR 352 + ++ + ++ G + + D + + +L Sbjct: 247 AKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLD 306 Query: 353 VDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 ++ AL I E + + L VG Sbjct: 307 EAFVIQEQNVALNFIGSR----GAKPGVTKEKRIKYAKEVLQKEMLPHVG---------- 352 Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 + + ++ +L+ G+ E+DD DH GN+R+ G + FR + Sbjct: 353 -VSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNL 411 Query: 472 ERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMD 516 + V+ + I + IS +K + SQ ++ Sbjct: 412 LKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLN 471 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + S ++H RR+++ + R+ + R +H T +G VCP ETPEG +GL+ +L+ Sbjct: 472 RLTFASTLSHLRRLNS----PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLA 527 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVED 632 + A + G +P + + + + +S + N + Sbjct: 528 LMAYISV-GSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNT 586 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 L R + + + + + ++ + + L + + L+ Q Sbjct: 587 LRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQL--- 643 Query: 693 LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYN 752 + ++ GVV+Y+D + M P + Sbjct: 644 -------------KEREYNNYSWQDLVASGVVEYIDTLEEETVM--LAMTPDDL------ 682 Query: 753 LTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF 812 PS LG + + +P+ +N Sbjct: 683 -----------------QEKEVAYCSTYTHCEIHPSMILG-------VCASIIPFPDHNQ 718 Query: 813 EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVY 872 + ++ ++I R L P V ++ L + Sbjct: 719 SPRNTYQSAMGKQ--AMGVYITNFHV--RMDTLAHVLYYPQKPLVTTRSMEYLRFRELPA 774 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 + AI + +DS + + V Sbjct: 775 -------------------------GINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSV 809 Query: 933 VFTRDGVEKDKR----ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 + ++ K+ E+ + + L+ + V K Sbjct: 810 FYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGK 869 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 LP +++LE +Y + + L K Sbjct: 870 TVTLPE------------NEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYK 917 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 K+ + R Q GDK A RHG KG EDMP+ G DI++NP +PSRM Sbjct: 918 FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMT 977 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQ-EVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 IG ++E G + G+ +A V K+ + + Sbjct: 978 IGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNG------ 1031 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 + GR + + + Sbjct: 1032 ---------------------------------------------FTGR---KITSQIFI 1043 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G Y +L H+VDDK+H+R+ G ++ +QP+ G+++ GG RFGEME A+GAA L Sbjct: 1044 GPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFL 1103 Query: 1288 QEMLTVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 +E L SD + + MP + +L +E+ Sbjct: 1104 RERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELM 1163 Query: 1332 SLGINIELE 1340 S+ I + Sbjct: 1164 SMSIAPRMM 1172 >UniRef50_P08266 DNA-directed RNA polymerase II subunit RPB2 n=26 Tax=Eukaryota RepID=RPB2_DROME Length = 1176 Score = 724 bits (1868), Expect = 0.0, Method: Composition-based stats. Identities = 198/1396 (14%), Positives = 389/1396 (27%), Gaps = 317/1396 (22%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPE------GQYGLEAAFRSVFPIQSYSGNSEL 68 + D L+ QLDSF +FI+ + L+A + L Sbjct: 28 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSL 87 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 ++ L +P + + S P Sbjct: 88 KFEQIYLSKPTHW-----EKDGSPS----------------------------------P 108 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 +M R + + + + K + + + Sbjct: 109 MM----------------PNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFI-- 150 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 K+P + + DL Sbjct: 151 -------------GKIPIMLRSTYCLLSQLTDRDLTELNE----------------CPLD 181 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDD-----------VKLIEVPVEYIAGKVV 297 F I + KV + + + T KD ++ P + ++ Sbjct: 182 PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMM 241 Query: 298 AKDYIDEST-----GELICAANMELSLDLLAKLSQSGHKRIETLFTN------DLDHGPY 346 A+ + + ++ + ++ G + + D + Sbjct: 242 ARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM 301 Query: 347 ISETLRVDPT-NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKF 405 + +L ++ AL I + + + L VG Sbjct: 302 VKPSLDEAFVVQEQNVALNFIGAR----GARPGVTKDKRIKYAKEILQKEMLPHVG---- 353 Query: 406 NRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 + + ++ +L+ G+ E+DD DH GN+R+ G + FR Sbjct: 354 -------VSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFR 406 Query: 466 VGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL------------ 511 + + V+ + I I+ ++ + Sbjct: 407 GLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466 Query: 512 -SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 SQ +++ S ++H RR+++ + R+ + R +H T +G +CP ETPEG +G Sbjct: 467 VSQVLNRLTFASTLSHLRRVNS----PIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVG 522 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH-- 628 L+ +L++ A + G +P + + + + ++ + N Sbjct: 523 LVKNLALMAYISV-GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 581 Query: 629 --FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 + L R + + + + + ++ + + L + L+ Sbjct: 582 EQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHV 641 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 + ++ V GVV+Y+D + Sbjct: 642 EML----------------KERDYNNYSWQVLVASGVVEYIDTLEEETVM---------I 676 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 + Y+L P+ LG + + +P Sbjct: 677 AMSPYDLK---------------QDKDYAYCTTYTHCEIHPAMILG-------VCASIIP 714 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 + +N + ++ ++I R L P V ++ L Sbjct: 715 FPDHNQSPRNTYQSAMGKQ--AMGVYITNFHV--RMDTLAHVLYYPMKPLVTTRSMEYLR 770 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 + + AI + +DS + + V Sbjct: 771 FRELPA-------------------------GINSIVAILCYTGYNQEDSVILNASAVER 805 Query: 927 TVIDVQVFTRDGVEKDKRAL----EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 + ++KR E+ + + L+ + Sbjct: 806 GFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGD 865 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 V K LP D+E + ++ +++ + + +T + Sbjct: 866 DVVIGKTITLPE--------NDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSE- 916 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 K K+ + R Q GDK A RHG KG EDM + G DI++NP Sbjct: 917 ---GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHA 973 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQ-EVAKLREFIQRAYDLGADVRQKVDL 1161 +PSRM IG ++E G G+ +A V K+ F+Q + Sbjct: 974 IPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNG 1033 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 G I VF Sbjct: 1034 ---------------HTGRKINAQVF---------------------------------- 1044 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 +G Y +L H+VDDK+H+R+ G ++ +QP+ G+A+ GG RFGEME ++ Sbjct: 1045 -----LGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISH 1099 Query: 1282 GAAYTLQEMLTVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNV 1325 GAA L+E L SD K + + +P + + Sbjct: 1100 GAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKL 1159 Query: 1326 LLKEIRSLGINIELED 1341 L +E+ S+ I L Sbjct: 1160 LFQELMSMNIAPRLMV 1175 >UniRef50_P78013 DNA-directed RNA polymerase subunit beta n=32 Tax=Bacteria RepID=RPOB_MYCPN Length = 1391 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 364/1462 (24%), Positives = 596/1462 (40%), Gaps = 242/1462 (16%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 R+ +GK P L IQ+ S+Q F++ D LE + FPI+S + Sbjct: 10 KKYSPTATRRYYGKIATDFVQPNLADIQIRSYQTFLDHD------LENLIAAYFPIKSPN 63 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLV------IYEREAPEGTVKDI 117 + + R P + + + TY + L L+ I + + Sbjct: 64 DRYTINFKGLRRTAPERNEAQSRSESKTYEIGIYADLELIDSATGTIKKPRKSKKNSATS 123 Query: 118 KEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL----YN 173 V++ +PL+T +G F++NG E+ +++Q+ RSPG++ + SS + Y Sbjct: 124 SVDGVFLTNLPLITRDGVFIVNGIEKFVIAQITRSPGIYMLTKSQLKLSSSRKRVQEGYV 183 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRR----------RKLPATIILRALNYTTEQILDL 223 ++P GS + K + + + P T +L+A + ++IL + Sbjct: 184 CEVLPANGSVMLIYISNKKKIEDAFVQILLRDAVREGAKIFPITTLLKAFGMSGKEILKV 243 Query: 224 FFEKVIFEIRDNKLQME----------LVPERLRGETASFDIEANGKVYVEKGRRITARH 273 F + LR + ++ R Sbjct: 244 FKNNEFITRSLEAEVYNAKDFLNNVDPEIKNLLREFRDGKTDLRRKGIASDQKIRSLVSD 303 Query: 274 IRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI 333 LEK+ L E + D + + A + +L L + Sbjct: 304 YVLLEKEHKALSEAKPNDPKVGQLEADMDELMDKIITERAAKHIVHELSISLRGLENTDE 363 Query: 334 -------ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM--------------MRP 372 L + Y + +L IY+ ++ Sbjct: 364 CPENSYHALLCSRFFRQRRYNLSAAGRYKVSRKLRITERIYQKTLACDLHLKNGELLLKK 423 Query: 373 GEPPTREAAESLFENLFFS--------------------EDRYDLSAVGRMKFNRSLLRE 412 G +E + + + + + ++ N + Sbjct: 424 GTLLVKEEIDKIKQAAQNNQIDFVQKIKLTTDGSAVNLSPESLLYESLDVYVNNDNFDVS 483 Query: 413 EI--------EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 + + ++ D I + +I+I + G+ DDIDHLGN+R++ + E+ ++ Sbjct: 484 VPVVGIHNDNDLNKAITLSDFIASISYVINIPSAIGKYDDIDHLGNKRVKLINELISSRL 543 Query: 465 RVGLVRVERAVKERLSLGDL-------------------DTLMPQDMINAKPISAAVKEF 505 G+ R+ER +KE+L++ D L + +IN+KPI +++F Sbjct: 544 ESGITRMERFLKEKLTIADGVNRGQQINEEGQVIEQAEKKELTIKSLINSKPIQIVIRDF 603 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 F + QL+QF+D NPLSE+++KRRISA+GPGG++RE ++RDVH + YGR+CPIETPE Sbjct: 604 FNTHQLTQFLDHQNPLSELSNKRRISAMGPGGISREDPNLDIRDVHYSQYGRICPIETPE 663 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 G NIGLI SL+ +A+ +E GFL PYRK+ +GV+TDE+ YL+A+ E ++IA Sbjct: 664 GMNIGLIMSLASFAKIDENGFLMAPYRKIKNGVITDEVEYLTALREDEHIIA-------- 715 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 V+ + + + +M Sbjct: 716 -------------------EISSLVNIDENNKILDKEIIGRYR---------------SM 741 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 Q P+ + + V+ ++ +++ + M Sbjct: 742 QGLYDPSKIDYIDV------------APHQVVSIGSSLIPFLENDDSARALMGTNMQRQA 789 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 Y L K P V G+ + D T Sbjct: 790 -----YPLIKP----------YAPVVGTGQE---YKIARDSGLT---------------- 815 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 +L T ++ G + I + Sbjct: 816 ----------MLAPCS------GTVKYVDNSKITIESDS-GEQHTLDLIKFERSNQNTCY 858 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 + +V G VT D ++ +++L+ + +L A + +D+ + V Sbjct: 859 NHVPLVEKGQRVTK-DEVIADGPAVNKSELSLGQNVLVAFTTWNGYNYEDAIVISERLVK 917 Query: 926 GTV-----IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 V I+ V + + + + A K +E I+ G + VLV Sbjct: 918 DDVLTSLTINEYVAQCLSTKNGDEQITRDIPNVSDANKRYLDENGIIMVGAEVKEGDVLV 977 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 +++ P ++ + + + + L + KR I G+ Sbjct: 978 GKVSPKGQVEVSPEEKLFKAIFPESVQNVRDSSLKLPHGGDGIVS----CVKRFSIANGN 1033 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 +L GV++++KVY+ KR+IQ GDK+AGRHGNKGVISK+ P+ DMP+ E+GTPVDI+LNP Sbjct: 1034 ELNDGVIEMIKVYVVQKRKIQIGDKLAGRHGNKGVISKVVPVADMPHLEDGTPVDILLNP 1093 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV---RQ 1157 LGVPSRMNIGQI E HLG AA + ++ + A+ D Sbjct: 1094 LGVPSRMNIGQIFEMHLGYAAHNLAKRMLISACFDDKKAQALSTEINQPQYKLDRLITGL 1153 Query: 1158 KVDLSTFSDEEVMRLAENLRKGM-----------------PIATPVFDGAKEAEIKELLK 1200 K ++ ++ L G +ATP+F G ++++++ Sbjct: 1154 KAQITNRGLKDEQAALAQLNNGDIALVLKEIGMSFDDLHFKVATPIFQGVNFQDLQDIMD 1213 Query: 1201 LGDLPT---SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L G+ +L DGRTG FE+P+++G MY++KLNH+VDDK+HAR+ G YS +TQQ Sbjct: 1214 EAGLKPAETHGKFKLIDGRTGLPFEKPISLGIMYIMKLNHMVDDKIHARAVGPYSKITQQ 1273 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGK+Q GGQRFGEMEVWALEAYGAAY LQE+LT+KSDDV GR K Y IV G EP Sbjct: 1274 PLGGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSDDVQGRNKAYAAIVKGAAFPEP 1333 Query: 1318 GMPESFNVLLKEIRSLGINIEL 1339 G+PESF +L KE++ L +++ Sbjct: 1334 GIPESFKLLTKELQGLALSVSF 1355 >UniRef50_A9BF33 DNA-directed RNA polymerase subunit beta n=4 Tax=Thermotogaceae RepID=RPOB_PETMO Length = 1187 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 370/1387 (26%), Positives = 602/1387 (43%), Gaps = 255/1387 (18%) Query: 1 MVYSYTE-KKRIRKDFGKRPQVLDVP-YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 M E +R RK FGK P+ ++ L+ IQ DSF+ F+++ + + + P Sbjct: 1 MNTVVREVGRRERKFFGKVPEKTEIYEDLVKIQKDSFRDFLDK------KIMESIKRYMP 54 Query: 59 IQSY-------SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 I+ + + +V + + F EC+ +G+TY+ +K+R+ Sbjct: 55 IKIPVKASGKKNKEFLIDFVDVKFEDSSFSENECRDKGLTYAGKAYLKVRIT------DS 108 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 T + I++ ++++ IP MT+ G F++NG ERVIV+QL RSPGV+F K + + K + Sbjct: 109 ATGEMIEKDDIFLCNIPYMTERGIFIVNGAERVIVNQLVRSPGVYF--IKEEETDTSKEM 166 Query: 172 YNARIIPYRGSWLDFEFD---PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV 228 + A +P +G+WL+ ++ K+ L VRIDR+RK + LRAL Y + + F K Sbjct: 167 FIAHFLPIKGAWLEILYNPNPGKEVLQVRIDRKRKFNFFLFLRALGYENDLDILRLFPKE 226 Query: 229 IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 I + VE + L ++ ++ P Sbjct: 227 IDLDDE----------------------------VELSNYNNCTVLSDLSFQELDDMDPP 258 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 + G + ++L L + K + + Sbjct: 259 RKSTYGMKL---------------------YEVLELLKKYEIKSVTVAHLVAEITLEKMK 297 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 + + L A EI+ ++P E P + A+ E+++F+ +++D S +GR K Sbjct: 298 KRYEKEERLTSLEAYKEIFSKLKPTEIPRAQKAKEEIEDMYFNPEKFDFSQIGRQKIQVK 357 Query: 409 L----------------------LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 L + + + K DII + L+ ++ +D D Sbjct: 358 LRKAYIDYLREVEKKDISEDMEDKIKYPIKTFAVDKLDIILSARYLLHVKENIEGLDTRD 417 Query: 447 HLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-LGDLDTLMPQDMINAKPISAAVKEF 505 HLGN+R+RSVGE+ + +F ++ + E+L+ + ++ + PQ +IN++ I A +F Sbjct: 418 HLGNKRVRSVGELMQIEFERAFSKMIQHAPEKLAGVQSINKISPQSLINSRSIMTAFHQF 477 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 F SSQLSQF+DQ NPL+E+THKRR+SA+GPGGL RE A FEVRDVH +HYGR+CPIETPE Sbjct: 478 FASSQLSQFLDQVNPLAELTHKRRLSAIGPGGLKREHAKFEVRDVHHSHYGRMCPIETPE 537 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 G NIGLI S+++ A+ +EYGFL+TPY +V + N Sbjct: 538 GANIGLITSMAILAKVDEYGFLKTPYYRV------------------KHAKVDLN----- 574 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 S D+ + ++ E + + Sbjct: 575 ---------------NIVYLSADEEELYRIAPASA-----------EIGEDGSLV----- 603 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 + + K + E + + ++ +++ + M Sbjct: 604 -EEYIEARYLGKVSLFHKDEIEYISVTPKQIASVSAALIPFLEHDDANRALMGSNMQRQA 662 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 Q P V G + D G L + ++ + Sbjct: 663 VP---------------LLRPQAPFVGTGV--------EWLAARDSGYLIMAKHKGIV-- 697 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 ++ D T +E + ++ + V + Sbjct: 698 -----DYVDG---------RKIVITRLDEENNVLKDSNDEPLKDEYTLLKYVRSNQDMCI 743 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 ++ IV +G VT G + +L + + + +D+ + + Sbjct: 744 NQVPIVNVGDVVTKGQA-IADGPSMDMGELALGRNIFIGFLPWEGYNFEDAIVVSQELLE 802 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRI 975 FT +E + ++ ++ D+ +E I++ G + Sbjct: 803 -----NDAFTSIHIEVFETKAMDTQLGPEEITADIPNVKKELLRNLDEEGIVKIGSYVSS 857 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 +LV + D P ++ ++ D+ + + L + + ++ ++ Sbjct: 858 GDILVGKVTPRGESDTTPEEKLIKSVFGDKGRDIKDSSLTVPHGIEGRVIDVQIFDRKDI 917 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 + L GV K VKV++A K+ +Q GDK+AGRHGNKGVIS I EDMP+ +GTP+ Sbjct: 918 PS----LEIGVNKYVKVFIATKKTLQVGDKLAGRHGNKGVISTILNKEDMPFLPDGTPLQ 973 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 ++L+PLGVPSRMNIGQ+LE HLG + D + +++ + + + Sbjct: 974 MLLSPLGVPSRMNIGQVLELHLGWLSMLTNDYYATPIFDGATESEIMDELSKV------- 1026 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 + E+ + + I L DG Sbjct: 1027 --------REEHELYLGDDPDQPNGKI----------------------------VLRDG 1050 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 RTGE F+ PV VG MYMLKL+H+ DK+HARSTG YSL+ QQPLGGKA FGGQRFGEMEV Sbjct: 1051 RTGEPFDFPVAVGSMYMLKLSHIAKDKIHARSTGPYSLIHQQPLGGKAHFGGQRFGEMEV 1110 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 WALEA+GAA+TL EMLT KSDD+ GR ++YK I+ G + EPG+PESF VL KE++ L + Sbjct: 1111 WALEAHGAAHTLNEMLTYKSDDIKGRNEVYKAILKGENLPEPGIPESFKVLTKELQGLML 1170 Query: 1336 NIELEDE 1342 +I+L DE Sbjct: 1171 DIKLYDE 1177 >UniRef50_Q0P3M6 DNA-directed RNA polymerase subunit beta n=1 Tax=Ostreococcus tauri RepID=RPOB_OSTTA Length = 1088 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 312/1208 (25%), Positives = 485/1208 (40%), Gaps = 157/1208 (12%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R + R FF G++ S R I DF F Sbjct: 22 RYFLETGIREELDFFSPIVGQSLGSSSKRPTDRFISVSFHSKDFYFKKPH---------- 71 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 P + + Y + I+ + + + L E +F + + +V Sbjct: 72 YTPQEAVQKLGTYKSSLIVP-VHVYSKYLNLNATFPVAFCDLPLMTEHGTFILNGSPRVI 130 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 V + R +++ V +++ + + G + + + + Sbjct: 131 VHQIVRCPGVYLKPQFDKQGNR-THLVSFLSAYGSWLRFETDKKGVVFAHIDNLRKVPVT 189 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRV-DPTNDRLSALVEIYRMMRPGEPPTREAA 381 L G + + + TL+ D A++ + + P P T Sbjct: 190 VFLQALGFSMDTIVGAL--KYPEALDPTLKEVDWKLTTDEAILLLMSRLFPNRPATVLRG 247 Query: 382 ESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE 441 N FF+ RY LS VGR + N+ L+ D + + L+ NG+ E Sbjct: 248 RKFLFNQFFNPRRYSLSDVGRKRVNQKFRMRSKTKHLTLTPQDALAALDYLLRCENGETE 307 Query: 442 V-DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP------QDMIN 494 DDIDHL NRR R GE+ + QFR+GL R+ER + R+S ++ P +I Sbjct: 308 FLDDIDHLKNRRARLAGELIQTQFRLGLNRLERVIYNRISDENILRKTPGALGSLNSLIR 367 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + +++ +EFFGS+QLSQFMDQ NPL+EITHKRR+S+LGPGGL R+RAG VR +HP++ Sbjct: 368 TQVLASVFQEFFGSNQLSQFMDQTNPLAEITHKRRLSSLGPGGLNRDRAGLIVRGIHPSY 427 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 YGR+CPIETPEG N GL+ S++ + Q N+ GFLE+PY K+ T + Sbjct: 428 YGRICPIETPEGKNAGLVGSIATFTQINKNGFLESPYYKLISESNTPD------------ 475 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 G L + + D + Q ++ + Sbjct: 476 -----------------------RNGFFLLSAFYEEDTV---VAQGDVDLSNFRIPTRNK 509 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 Q + +G + ++ ++ +++ Sbjct: 510 S------------QFTENTVQEINFLGLC---------PIQFMSIATSLIPFLEHDDANR 548 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + M + ++ P V G + Sbjct: 549 ALMGSNMQRQAV---------------SLLRSERPFVGTGLEAHVTRDIGATIVAKQNSY 593 Query: 795 ALGQNM--RVAFMPWNGYNFEDSILVSER-VVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 + F P G D+ L+ + + ED F + + Sbjct: 594 ISYVDAQRIDYFTPVIG----DTNLIDYQNLTAEDVFASNQFKHNTIWLTSY-------- 641 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 + L+ +V V GD L + +L +L + Sbjct: 642 -----QRSNQDTCLNHKPLVEANTWVEAGDCL-ADNAATAKGELALGRNILIGYMPWEGY 695 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGL 971 + +D+ L V V +R V + E + + +E +++ G Sbjct: 696 NFEDAVLVSERLVYDDVFTSIHISRYEVSTARLREGQEYFTNQVDRNQYLDEFGVVKIGT 755 Query: 972 FSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 + VLV D P R L + + + + E Sbjct: 756 WVEAGDVLVGKISPQPDSDNDPESRLLRAIFGGVARNTKTTSYCLSSGVSGRILDVRCEF 815 Query: 1032 KRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENG 1091 KR+ D+ V VYL KRR+Q GDK+AGRHGNKG++S I P DMPY ++G Sbjct: 816 KRQTKNIEDESIESTGS-VYVYLVEKRRLQVGDKVAGRHGNKGIVSNILPRVDMPYLQSG 874 Query: 1092 TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDL 1151 +D+VLNPLGVPSRMN+GQI E LG+AA + + + Sbjct: 875 KALDMVLNPLGVPSRMNVGQIFECLLGLAANTLKQNFKVLPFDEM--------------H 920 Query: 1152 GADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIR 1211 GA+V + ++ + L + G+ Sbjct: 921 GAEVSRGFVYHYLYKSRLLTQQK-------------------------WLFKPNSPGKSI 955 Query: 1212 LYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG 1271 ++DGRTG F++PVTVGY Y+LKL HLVDDK+HARSTG YSLVTQQPLGG+++ GGQR G Sbjct: 956 VFDGRTGLNFDQPVTVGYPYILKLVHLVDDKIHARSTGPYSLVTQQPLGGRSKKGGQRLG 1015 Query: 1272 EMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 EMEVWALE +GAAY LQE+LT+KSDD+ GR + + +++ G + G+PESF VL+ E+R Sbjct: 1016 EMEVWALEGFGAAYVLQELLTIKSDDMIGRNRAFMSMIRGTLLPKSGIPESFKVLVSELR 1075 Query: 1332 SLGINIEL 1339 L +++ + Sbjct: 1076 GLCLDMSI 1083 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 68/362 (18%), Positives = 125/362 (34%), Gaps = 51/362 (14%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ----------SYSGNSELQY--V 71 +P L Q DSF+ F+E G+ PI + + Sbjct: 10 LPNFLDSQRDSFRYFLE------TGIREELDFFSPIVGQSLGSSSKRPTDRFISVSFHSK 63 Query: 72 SYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 + +P + QE + TY + L V + + V ++PLMT Sbjct: 64 DFYFKKPHYTPQEAVQKLGTYKSSLIVPVHVYSKYLNLNATFP-------VAFCDLPLMT 116 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 ++GTF++NG+ RVIV Q+ R PGV+ K G + + GSWL FE D K Sbjct: 117 EHGTFILNGSPRVIVHQIVRCPGVYLKPQFDKQ---GNRTHLVSFLSAYGSWLRFETDKK 173 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV--IFEIRDNKLQMELVPERLRG- 248 +F ID RK+P T+ L+AL ++ + I+ +++ ++ L Sbjct: 174 GVVFAHIDNLRKVPVTVFLQALGFSMDTIVGALKYPEALDPTLKEVDWKLTTDEAILLLM 233 Query: 249 -----ETASFDIEANG---KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG------ 294 + + + R + R+ ++ Sbjct: 234 SRLFPNRPATVLRGRKFLFNQFFNPRRYSLSDVGRKRVNQKFRMRSKTKHLTLTPQDALA 293 Query: 295 ------KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 + + + + L+ +L+ + G R+E + N + + Sbjct: 294 ALDYLLRCENGETEFLDDIDHLKNRRARLAGELIQTQFRLGLNRLERVIYNRISDENILR 353 Query: 349 ET 350 +T Sbjct: 354 KT 355 >UniRef50_Q9NW08 DNA-directed RNA polymerase III subunit RPC2 n=281 Tax=cellular organisms RepID=RPC2_HUMAN Length = 1133 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 200/1255 (15%), Positives = 372/1255 (29%), Gaps = 219/1255 (17%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 + +V Q S F + + K + + + + + +L+ D R Sbjct: 37 KGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRP 96 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR--------------- 247 P LR + Y+ +D+ + + I N L + +P LR Sbjct: 97 VSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFA 156 Query: 248 -------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 F ++ KV + + + R I + ++ V K + Sbjct: 157 KLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVT-SSTHEKKSRTN 215 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRVD 354 + + + + ++ G + + + + E + Sbjct: 216 MAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKA 275 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 ++ AL I +R ++ E L+ V Sbjct: 276 QIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHV-----------PVK 324 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 E + +++++I + G +VDD D+ GN+R+ G++ F + Sbjct: 325 EFNFRAKCIYTAVMVRRVI-LAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSE 383 Query: 475 VKER----LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS---QFMDQNNPLSEITHK 527 +K+ + + I+ + + S MD+ ++ Sbjct: 384 MKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRL 443 Query: 528 RRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ISALG + R R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 444 SYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHIT 503 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI--AQANSNLDEE----GHFVEDLVTC 636 P K+ + ++++ L E + N N+ V Sbjct: 504 TDMED-GPIVKLASNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLM 562 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R G + F + D + S G L ++ Sbjct: 563 RRAGYINEFVSISTNLTDRC-VYISSDGGRLCRP-------------------YIIVKKQ 602 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 KP V +A +V+Y+D + + + E I+ Sbjct: 603 KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEEN----DCNIALYEHTIN------- 651 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 + L P T LG + +P+ +N Sbjct: 652 ---------------------KDTTHLEIEPFTLLG-------VCAGLIPYPHHNQSPRN 683 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 + ++ T +R L P V + ++ + Sbjct: 684 TYQCAMGKQAMGTI----GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPA---- 735 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 + A+ D++D+ + + V+ Sbjct: 736 ---------------------GQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKN 774 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 KR ++ D + I + VE +++ Sbjct: 775 AK-CTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMP 833 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 + + Q + + K + +D ++K+ L Sbjct: 834 TVTQIPLEGSNVPQ-QPQYKDVPITYKGATDSYIEKVMISSNAED-----AFLIKMLLRQ 887 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 RR + GDK + RHG KGV I P EDMP+ ++G DI++NP G PSRM +G+++E Sbjct: 888 TRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELL 947 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 G A G +V + E + R T E Sbjct: 948 AGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEA------- 1000 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 G +Y KL Sbjct: 1001 ---------------------------YIYFG--------------------PVYYQKLK 1013 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 H+V DKMHAR+ G +++T+QP G+++ GG R GEME L YGA+ L E L + SD Sbjct: 1014 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1073 Query: 1297 ----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 DV G+ H +P + +L +E++S+ I L+ Sbjct: 1074 AFEVDVCGQCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKL 1128 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 37/247 (14%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQ 69 + + + P L V L+ +DSF FI + + S L+ Sbjct: 22 TVEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTS-----DADPMWYLK 76 Query: 70 YVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKL-----------------RL 102 Y++ +G P EC++R +TYSAP+ V + R+ Sbjct: 77 YLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRM 136 Query: 103 VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKG 162 I R + + + E PL G F++ G E+VI+ Q S Sbjct: 137 PIMLRSSNCVLTGKTPAEFAKLNECPL-DPGGYFIVKGVEKVILIQEQLSKNRIIVEADR 195 Query: 163 KTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQIL 221 K V + R + +P II +A+ + ++I+ Sbjct: 196 KGAVGASVTSSTHEKKSR---TNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIV 252 Query: 222 DLFFEKV 228 + + Sbjct: 253 QMIGTEE 259 >UniRef50_B1VAM6 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Phytoplasma RepID=RPOB_PHYAS Length = 1240 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 375/1402 (26%), Positives = 615/1402 (43%), Gaps = 248/1402 (17%) Query: 1 MVYS--YTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 M Y KK R+++ K +D+P L+ IQ SF F++ G+E + P Sbjct: 1 MAYRNVKYGKKVERRNYSKIIYDVDLPNLIEIQNKSFNWFLKD------GIEELLQDFCP 54 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 I+SY+G+ ++ + P + V+E + + +Y L VK L + K Sbjct: 55 IESYNGDLKIYFGECYSTGPKYSVEESKTKDASYVIQLFVKATLENT-------LTGETK 107 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 + V + E+PL+TD GTF+ING ERV VSQ+ RS V K LY+ ++IP Sbjct: 108 KSSVLLTELPLITDTGTFIINGKERVAVSQIVRSSSV--YYSSTFDVKLNKNLYSGQVIP 165 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEK---------VI 229 RG+W+++E K+ L+V++DR +K+P + + AL + +I++ F K Sbjct: 166 ARGAWIEYEEGSKEILYVKLDRSKKIPLSNFIYALGFNNREIIEKVFGKSPLLNSSFVKE 225 Query: 230 FEIRDNKLQMELVPERLRGETASFDIEA--NGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 ++ +EL + +GE D K ++ + R + ++ Sbjct: 226 EDMDTGNALIELYSKIRQGEKVPVDTARDFIRKRLFDQKKYDLTTVGRYKFNKKLDVLAR 285 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 + + D+++ T E+I + L+ D + L ++ H ++ LF + Sbjct: 286 AEKT----YLVHDFVNLETKEIILPKHTFLTKDKIEILRKNRHFLLQELFDAQHNLENET 341 Query: 348 SETLRVDPTNDRLSAL-----------------------VEIYRMMRPGEPPTREAAESL 384 E + + + L E+ + +R Sbjct: 342 DEEILTYKKDPQSRELYIKTNILNFRTGEIIFPKDTLVTDEVIKRLRKSIQLLDGKVIEF 401 Query: 385 FENLFFSEDRY----------------DLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 F + + + + E ++ DII Sbjct: 402 FLRSKDVYQKDLERTGVFNEILEVYLSKDEHDNLQHKVQIVGNNQKETKKHITLSDIIAS 461 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM 488 + +++ G G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S+ + Sbjct: 462 ISYYLNLYEGIGNVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKHIKDMISVSKFSEVG 521 Query: 489 PQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 P +++N ++ +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVR Sbjct: 522 PGELVNFGFLNGVIKTFFANSRLSQFMDQINPLAELTQKRRVSALGVGGINRDRAGVEVR 581 Query: 549 DVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD----GVVTDEIH 604 DVH +HYGR+CPIETPEGP+IGLI SL++YA+ ++YGF++TP+ KV V+++I Sbjct: 582 DVHNSHYGRLCPIETPEGPSIGLIASLAIYAKVDDYGFIQTPFFKVFVQNGASYVSNQIE 641 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 YL+A +E + + S ++ S Sbjct: 642 YLTADQEKE-------------------------------------EIIASSGYELNSDA 664 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 Q+ V + + + + A S V+ + Sbjct: 665 T-------------------FQKDKVIARKNGEIGIYPKEQVTYADISPKQIVSIATASI 705 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 +++ + + M + + P V G + Sbjct: 706 PFLEHNDSSRALMGSNMQRQAVP---------------LLVTESPIVGTG--------IE 742 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 + D G L + + + + + K Sbjct: 743 YRAAKDSGSLIIASQP--GIVTYVD----------------------AKKIVTSDQEGNK 778 Query: 845 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 + T + N L K IV +G + GDILV + +L +L A Sbjct: 779 KEYQLTTFEKSNQDTLILQK----PIVSLGDNIQKGDILV-DGPSTNQGELALGRNILVA 833 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-----GVEKDKRALEIEEMQLKQAKKD 959 + + +D+ + V V + ++K EI Sbjct: 834 FMTWEGYNYEDAIIISEELVKNDVYTSVHINKYSVQTRELKKGSGKEEITREVPNVGADA 893 Query: 960 LS--EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 + +E I+ G + +LV +D P+++ +++ + ++ ++ + L Sbjct: 894 IKNLDERGIIIPGSEVKEGDILVGKITPQGNVDPTPQEKLIQIVIGEKAREYKDSSLRVP 953 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 Y E + +++ GD L PGV + ++V++A KR+I GDKMAGRHGNKGVIS Sbjct: 954 YGEGGIVQSVQYFSRK----NGDILPPGVNENIRVFIAKKRKISEGDKMAGRHGNKGVIS 1009 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 +I P ED+P+ E+GT +D++LNPLGVP + IG + L + Sbjct: 1010 RILPKEDLPFMEDGTTIDVMLNPLGVP---------------SRMNIGQILEIHLGMSAK 1054 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 + +ATPVFDG + ++KE Sbjct: 1055 NLNI---------------------------------------KVATPVFDGVNDQDLKE 1075 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 + + +L G+ LYDGRTGE +E ++VG MYM+KL+H+VDDK+HAR+ G Y+LVTQQ Sbjct: 1076 ISQEANLELDGKKVLYDGRTGEPYENRISVGVMYMIKLSHMVDDKLHARNVGPYTLVTQQ 1135 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 P+ GK + GGQR+GEME WA+ A+GAAYTLQE LT+KSDD+ GR + Y IV G +P Sbjct: 1136 PMRGKIREGGQRYGEMENWAVHAHGAAYTLQEFLTIKSDDIIGRNQTYSAIVQGKQLPKP 1195 Query: 1318 GMPESFNVLLKEIRSLGINIEL 1339 +PESF VL+KE+++LG+ +EL Sbjct: 1196 NIPESFRVLIKELQALGLYVEL 1217 >UniRef50_Q01GR3 DNA-directed RNA polymerase n=21 Tax=Viridiplantae RepID=Q01GR3_OSTTA Length = 999 Score = 707 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 190/1190 (15%), Positives = 355/1190 (29%), Gaps = 247/1190 (20%) Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 + + +L E F I + KV + + Sbjct: 1 MLRSDYCSLHGHTDKELTELGECPY----------------DEGGYFVINGSEKVLIAQE 44 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIA-------------GKVVAKDYIDESTGELICAA 313 R T +K K + ++ A D Sbjct: 45 RMSTNHVYVFEKKQPSKFMWQAECRSQPERGSRGASSCVMRQMHAVGTKDAPGPIRCTLP 104 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTN------DLDHGPYISETLRVDP-TNDRLSALVEI 366 + + + G + + + D + + ++ + AL I Sbjct: 105 YIRTDIPIFVVFRALGFVADKDILEHICYDLADNEMMEMLRPSIEEAFVIQSQEVALDFI 164 Query: 367 YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 + + E + + L VG E + Sbjct: 165 GKR----GSAVGVSREKRIKYAKEILQKELLPHVG-----------VREDCETKKAYFLG 209 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDL 484 ++ +L+ G+ DD DH GN+R+ G + FR ++ + V+ Sbjct: 210 YMIHRLLLCSLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSG 269 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRRISA 532 + Q I AK I+ +K + SQ +++ + S ++H RRI++ Sbjct: 270 KEIQLQLAIKAKTITQGLKYSLATGNWGSQGAQDIRAGVSQVLNRLSYSSTLSHLRRINS 329 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 + RE + R +H + +G +CP ETPEG +GL+ +L++ A + G P Sbjct: 330 ----PIGREGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMALVSV-GSPSEPIL 384 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRD 648 + D + + +S N V L R + + Sbjct: 385 EFLDEWTMENLEEISPSLIAESTKIFLNGVWVGVHRDPADLVRTLRKLRRQCDVDSSVSV 444 Query: 649 QVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV 708 V + + ++ + L D ++ L +Q + L E+ V Sbjct: 445 -VHDIRLKELRLYTDYGRCTRPLFIVDDDQKLRIK---KQHIELL----------TEKDV 490 Query: 709 AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 S G ++YVD + + A Q Sbjct: 491 TGYS--WNELVTSGFIEYVDTEEEETTMISMTIDDLAAA------------------RQS 530 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 G + R PS LG + + +P+ +N + ++ Sbjct: 531 ADRKTGVAI-RYTHCEIHPSMILG-------ICASIIPFPDHNQSPRNTYQSAMGKQAMG 582 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 + R LG P V A+ L + Sbjct: 583 MYV----TNYQIRMDTLGYVLFYPQKPLVTTRAMEYLHFRELPA---------------- 622 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 + AI + +DS L + + + + E +K+ + Sbjct: 623 ---------GCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDE-EKKQGSL 672 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQ 1008 + ++ +D ++ L D + Sbjct: 673 SREEFERPDRDTCLGMRHGTYDK--------------------LDDDGLI---------- 702 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 L++++ + K L+ VK+ + R Q GDK + Sbjct: 703 YDSAVLSKRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVGDKFSS 762 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KG + EDMP+ G DI++NP +PSRM IGQ++E +G A +G + Sbjct: 763 RHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGKEG 822 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 +A + + + + G + +F Sbjct: 823 DATPFTPVTAEDISTMLHKCGYQKRGNEVMYNG---------------HTGRMLDAQIF- 866 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 +G Y +L H+VDDK+H+R Sbjct: 867 --------------------------------------IGPTYYQRLKHMVDDKIHSRGR 888 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM 1304 G ++T+QP+ G+++ GG RFGEME + ++GAA L+E L +SD V + + Sbjct: 889 GPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSDAYRIHVCQKCGL 948 Query: 1305 -------------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 KN + ++ +P + +L +E+ S+ I L Sbjct: 949 IAVANLKNQTFECCKNPSERTSVVQVMVPYACKLLFQELMSMAIAPRLIT 998 Score = 57.6 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 23/226 (10%) Query: 105 YEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 R ++ +GE P + G FVING+E+V+++Q S + + K Sbjct: 1 MLRSDYCSLHGHTDKELTELGECPY-DEGGYFVINGSEKVLIAQERMSTNHVYVFE-KKQ 58 Query: 165 HSSGKVLYNARIIPYRGSWLDFEF-----------DPKDNLFVRIDRRR-KLPATIILRA 212 S R P RGS D + + R +P ++ RA Sbjct: 59 PSKFMWQAECRSQPERGSRGASSCVMRQMHAVGTKDAPGPIRCTLPYIRTDIPIFVVFRA 118 Query: 213 LNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITA 271 L + + IL+ + L+ + +F I++ G+R +A Sbjct: 119 LGFVADKDILEHICYDLADNEMMEMLRPSIEE--------AFVIQSQEVALDFIGKRGSA 170 Query: 272 RHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 + + ++ + E + V +D + L + L Sbjct: 171 VGVSREKRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLL 216 >UniRef50_C4Q1D7 DNA-directed RNA polymerase n=129 Tax=Eukaryota RepID=C4Q1D7_SCHMA Length = 1304 Score = 706 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 191/1392 (13%), Positives = 389/1392 (27%), Gaps = 309/1392 (22%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + D L+ QLDSF +FI+ + Q G E Sbjct: 153 WIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGGILE------- 205 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 + +++ ++ L +G+ + + + +T Sbjct: 206 ------TPVQYRLK--------FEQIYLSKATHWEKDGSSVPMTPND---ARLRNLTYAA 248 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 ++ +++I ++ + Sbjct: 249 PLYVDVMKKIIRDEIEEEKPL--------------------------------------- 269 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 K+P + + DL F Sbjct: 270 --EKKFIGKIPIMLRSTYCLLSVMSDRDLAELNE----------------CPLDPGGYFI 311 Query: 255 IEANGKVYVEKGRRITARHIRQLEK------DDVKLIEVPVEYIAGKVVAKDYI------ 302 I + KV + + + T +K + + + + Sbjct: 312 INGSEKVLIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMMARGGKD 371 Query: 303 -----DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN------DLDHGPYISETL 351 + ++ + +L G + + D + I +L Sbjct: 372 GSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSL 431 Query: 352 RVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 ++ AL I E + + L VG Sbjct: 432 DDAFVIQEQKVALNFIGSR----GARPGVTKEKRIKYAKEILQKETLPHVG--------- 478 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + + ++ +L+ + +VDD DH GN+R+ G + FR Sbjct: 479 --VSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRN 536 Query: 471 VERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFM 515 + + ++ + I ++ I+ +K + SQ + Sbjct: 537 LTKEIRLYAQKFIDKGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVL 596 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 ++ S ++H RR+++ + R+ R +H T +G +CP ETPEG +GL+ +L Sbjct: 597 NRLTFASTLSHLRRLNS----PIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNL 652 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG----HFVE 631 ++ A + G +P + + + + ++ G N H + Sbjct: 653 ALMAYISV-GSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMG 711 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 L R + + + + ++ + + L + + L+ + Sbjct: 712 TLRKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLKRSHIELL-- 769 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 + A + GVV+Y+D + M P E Sbjct: 770 --------------KDKAYNRYSWQDLVLSGVVEYIDTLEEETVM--IAMGPAEM----- 808 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 + + PS LG + + +P+ +N Sbjct: 809 -------------------QAAVNYCKTHTHCEIHPSMILG-------ICASIIPFPDHN 842 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 + ++ ++I R L P V ++ L + Sbjct: 843 QSPRNTYQSAMGKQ--AMGVYISNFHT--RMDTLANVLYYPQKPLVATRSMEYLRFRELP 898 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 + AI + +DS + + + Sbjct: 899 A-------------------------GINAIVAIATYTGYNQEDSVIINESAIQRGFFRS 933 Query: 932 QVFTRDGVEK----DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 + + ++ E+ + + L+ + V Sbjct: 934 EFYRTYKDQETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIG 993 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 K LP ++E + + ++ + + + +T ++ Sbjct: 994 KTITLPE--------NEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNE----GN 1041 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 K KV + + Q GDK A RHG KG EDMP+ G DI++NP +PSRM Sbjct: 1042 KFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRM 1101 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQ-EVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 IG ++E G + G+ +A V K+ +Q + Sbjct: 1102 TIGHLIECLQGKVSANKGEIGDATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNG----- 1156 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 + GR + + Sbjct: 1157 ----------------------------------------------FTGR---KLNSQIF 1167 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +G Y +L H+VDDK+H+RS G ++ +QP+ G+++ GG RFGEME A+GAA Sbjct: 1168 LGPTYYQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF 1227 Query: 1287 LQEMLTVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKEI 1330 L+E L SD ++ + +P + +L +E+ Sbjct: 1228 LRERLFFASDPYQVYVCNLCGLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQEL 1287 Query: 1331 RSLGINIELEDE 1342 S+ I + Sbjct: 1288 MSMSIAPRMMIN 1299 >UniRef50_Q2NJ15 DNA-directed RNA polymerase subunit beta n=24 Tax=Mollicutes RepID=RPOB_AYWBP Length = 1273 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 380/1161 (32%), Positives = 585/1161 (50%), Gaps = 115/1161 (9%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 KK R+++ K +D+P L+ IQ SF F++ G++ + PI+SY+G+ + Sbjct: 10 KKAQRRNYSKTIYDVDLPNLIEIQNQSFDWFLKH------GIKELLQDFCPIESYNGDLK 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 + + Y L P + ++E +I+ ++Y A L VK L + K+ + + E+ Sbjct: 64 IHFDDYFLTPPKYSIEETKIKDISYVAQLFVKTTL-------ENVLTGETKQSNILLTEL 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 PLMT GTF+INGTERV+VSQ+ RS V+F + + +Y+ ++IP RG+W+++E Sbjct: 117 PLMTSTGTFIINGTERVVVSQIVRSASVYFAGNFD--IKLNRTIYSGQVIPSRGAWIEYE 174 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQ----------ILDLFFEKVIFEIRDNKL 237 K+ L+ ++DR +K+P + + AL + +++ ILD F+K ++ + Sbjct: 175 EGSKEILYAKLDRSKKIPLSNFIYALGFDSKEAIENVFGKSAILDSVFDKET-DMDSDNA 233 Query: 238 QMELVPERLRGETASFDIEA--NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +EL + +GE D ++ + A+ R + ++ Sbjct: 234 LVELYSKIRQGEKVPVDTARDFIRTRLFDQKKYDLAKVGRYKFNKKLDVLTRAENT---- 289 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 +A D+++ E++ A + L+ + +A L Q+ H ++ +F + E + Sbjct: 290 YLACDFVNPENQEIMIAQDELLTKEKIAILKQNRHFLLQEIFDAKHNLENETDEEILAYK 349 Query: 356 TNDRLSAL-----------------------VEIYRMMRPGEPPTREAAESLF------- 385 + + L +I +R E F Sbjct: 350 KYPQKNELFTKTNIINSRTGEVLVAKDTLVNDDIINHLRHNIHTLDEKVSKFFLGTKDIY 409 Query: 386 ---------ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 N + + + ++ E ++ D+I + +++ Sbjct: 410 QKEADRQGVFNEILEVYTSKDESGKLYNKVKLIGNDQRETKKHITLSDVIASINYYLNLY 469 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM-PQDMINA 495 G VDDIDHLGNRR+R +GE+ +NQFR+GL R E+ +K+ +S + P D++N Sbjct: 470 ENVGTVDDIDHLGNRRLRLIGELLKNQFRIGLTRAEKNIKDMISTSKFGEVNGPGDLVNF 529 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 + + +K FF +S+LSQFMDQ NPL+E+T KRR+SALG GG+ R+RAG EVRDVH +HY Sbjct: 530 TFLMSVIKTFFTNSRLSQFMDQINPLAELTQKRRVSALGIGGINRDRAGIEVRDVHNSHY 589 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT----DEIHYLSAIEE 611 GR+CPIETPEGP+IGLI SLS YA+ N+YGF++TP+ KV +I YL+A +E Sbjct: 590 GRLCPIETPEGPSIGLITSLSTYAKVNKYGFIQTPFFKVLQQDGKTTLSRDIDYLTADQE 649 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 +IA A LD F + + RS GE+ +F R+Q+ Y DVS +Q+VSV S IPFL Sbjct: 650 KEEIIASAGFVLDANNSFQDKKIIARSNGETGIFERNQITYADVSPKQIVSVATSSIPFL 709 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 EH+DA+RALMGANMQRQAVP L + P+VGTG+E A DSG +A+ G V YVDA + Sbjct: 710 EHNDASRALMGANMQRQAVPLLIPESPIVGTGVEYRAAKDSGCLIIARESGFVTYVDAQK 769 Query: 732 IVIKVNEDEMYPGEAGI-------------------------DIYNLTKYTRSNQNTCIN 766 I+I ++ Y L + +SNQ+T + Sbjct: 770 IIITKKPNQTVSLNGKTLYDTTQEFTYTQAKVLYENNHKEYQAEYTLINFAKSNQDTLVL 829 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P V LGE + GD+L GPST GELALG+N+ VAFM W GYN+ED+I++SE +V+ D Sbjct: 830 QKPIVVLGEHINEGDILVSGPSTSQGELALGRNVTVAFMTWEGYNYEDAIIMSEELVKHD 889 Query: 827 RFTTIHIQELACVSRDTKL--GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 +T+IHI + +R+ K G EEIT ++PNVG A+ LDE GI+ G+EV GDILV Sbjct: 890 VYTSIHIDKYEVQTRELKKGSGQEEITREVPNVGADAIKNLDERGIIIPGSEVKEGDILV 949 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK- 943 GK+TP+G + +P EKL++ + GEKA + KDSSLRVP G G V V F+R + Sbjct: 950 GKITPQGNIEPSPSEKLIQIVIGEKAREYKDSSLRVPFGEGGIVQSVHYFSRKNGDVLPA 1009 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 E + + + +K + G I +L + D P D L L Sbjct: 1010 GVNENIRVFIAKKRKINEGDKMAGRHGNKGVISRILPKEDLPY-MADGTPIDIMLN-PLG 1067 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK-----IVKVYLAVKR 1058 + N + L + K+ DL + + K+ L R Sbjct: 1068 VPSRMNIGQILEIHLGMAAKKLGIKVATPVFDGVNDYDLKEIMKEANLEPDGKMVLYDGR 1127 Query: 1059 RIQPGDKMAGRHGNKGVISKI 1079 G+ R GV+ + Sbjct: 1128 T---GEPYDSRIS-VGVMYMV 1144 >UniRef50_B7FVD4 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVD4_PHATR Length = 1211 Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 206/1274 (16%), Positives = 384/1274 (30%), Gaps = 216/1274 (16%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTH--SSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 R ++ Q S F D + + S + + + + Sbjct: 78 RSLLRQHIDSFDHFVDVEMQQIVQSPSACEIRSEHDPKFYLRYEACWVGEPSVEEDSYSV 137 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR------------- 247 + P LR Y+ +++ + + + K+ + +P LR Sbjct: 138 KSATPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVMIGRMPIMLRSKKCLLRDRSEDD 197 Query: 248 ---------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 F I+ KV + + + R I + + I + + + Sbjct: 198 LAGMKECPYDPGGYFVIKGVEKVILIQEQLSKNRVILEEDNKG---IMASITSSTHERKS 254 Query: 299 KDYIDESTGELICAANME-LSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETL 351 K YI G + N + + L G + L P I E Sbjct: 255 KAYILIKNGRVYLKNNTLGDDIPVAVVLKAMGIESDLELVQLVGSESPIINALALSLEEP 314 Query: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 + + AL I +R P+ ++ E R L+ V Sbjct: 315 SRLGIHTQAQALRFIGAKIRGRSGPSGPSSSYRKNVSPEDEAREVLANVVLSH------V 368 Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 I ++++++ + GK +DD D+ GN+R+ G + F Sbjct: 369 PVTHFDFREKALYIGHIVRRVLLVHLGKMPLDDKDYYGNKRLELAGNLLSLLFEDLFKIF 428 Query: 472 ERAVKER----LSLGDL-DTLMPQDMINAKPISAAVKEFFGSSQLS---QFMDQNNPLSE 523 + +K + LS + I I+ + + MD+ Sbjct: 429 NKDLKRQADLVLSKPNRTQAFDVVKTIRPDTITNGMINAIATGNWVLKRFRMDRAGVTQV 488 Query: 524 ITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 ++ +SALG + R R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 489 LSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALL 548 Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNLDEEG----HFVED 632 P ++ + +++ ++ E ++ + N + V + Sbjct: 549 GHITTDEADTRPIERICRDLGVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPRELVRN 608 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 L R +G + + HD+ + + R P Sbjct: 609 LRKMRRRG----------------------LAGEFVSVYLHDEQCAVHIATDGGRVCRPL 646 Query: 693 LRADK----PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 L D+ P + ++A+ + R G+V+YVD + + E I Sbjct: 647 LIVDEETGLPKLQQIHMESLALGTMDITDLMRQGIVEYVDCNEENNTLIAVTERDLEVAI 706 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 L R L P T LG + +P+ Sbjct: 707 ---------------------LHGLETRKMRYTHLEVDPFTILG-------VVGGIIPFP 738 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 +N + + ++ ++ + + R L I P V L ++ Sbjct: 739 HHNQSPRNTYTVAMAKQAMG-SVSMNQYE---RMDGLIYTLIYPQKPMVKSRTLDLVNFD 794 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 I A+ D++D+ + V Sbjct: 795 NIP-------------------------GGHNACIAVMSYSGYDIEDAIILNKAAVDRGF 829 Query: 929 IDVQVFTRDGVEKDKRALEIEEM---------QLKQAKKDLSEELQILEAGLFSRIRAVL 979 V + + A + ++ R+ + Sbjct: 830 GRCMVLRKHQTSVRRYANGTMDRTCAPPDPGSFPDGEDDKRFARYMAIDKDGICRVGEKI 889 Query: 980 VAGGVEAEKLDKLPRDR-WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 G V K + + + K + Sbjct: 890 ENGSVMVNKESPADTTSNMAGVDFGFNSGMSMAHLNYKPSGVSYRGSASTYVDKVLITSN 949 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 ++ ++KV L RR + GDK A RHG KGV I P ED+P++E G D+++ Sbjct: 950 ENE-----QFLIKVMLRQVRRPEIGDKFASRHGQKGVCGLIVPEEDLPFNEFGHVPDLIM 1004 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP G PSRM +G++LE +G A G + + Sbjct: 1005 NPHGFPSRMTVGKLLELLVGKAGLYEGRQGYSSAF--------------------GEEFG 1044 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + S E + G + LY G G Sbjct: 1045 SADTAQSASEALLRNGLNYTG-----------------------------KDILYSGTNG 1075 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E + + G ++ KL H+V DK HAR+ G +++T+QP G+++ GG R GEME L Sbjct: 1076 EPLDAYIFSGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCL 1135 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTK----------MYKNIVDGNHQMEPGMPESFNVLLK 1328 AYG + + E L SD + + G + +P + +L + Sbjct: 1136 IAYGVSNLIMERLMHSSDAFSANVCLTCGLLQYEGWCQYCRSGEKVADIRLPYACKLLFQ 1195 Query: 1329 EIRSLGINIELEDE 1342 E++S+ + L + Sbjct: 1196 ELQSMNVLPRLRLQ 1209 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 83/258 (32%), Gaps = 49/258 (18%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQ 69 +R + P L + LL +DSF F++ + + +A + L+ Sbjct: 63 SLRDKWRLLPYFLRLRSLLRQHIDSFDHFVDVEMQQIVQSPSACEIRSE---HDPKFYLR 119 Query: 70 YVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 Y + +GEP +C++R TYSAP+ V +R + + + Sbjct: 120 YEACWVGEPSVEEDSYSVKSATPFQCRLRDCTYSAPIYVNVRYT--------RGRQIVVK 171 Query: 120 QEVYMGEIPLM------------------------TDNGTFVINGTERVIVSQLHRSPGV 155 ++V +G +P+M G FVI G E+VI+ Q S Sbjct: 172 RKVMIGRMPIMLRSKKCLLRDRSEDDLAGMKECPYDPGGYFVIKGVEKVILIQEQLSKNR 231 Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY 215 + K + R S +P ++L+A+ Sbjct: 232 VILEEDNKGIMASITSSTHE----RKSKAYILIKNGRVYLKNNTLGDDIPVAVVLKAMGI 287 Query: 216 TTEQILDLFFEKVIFEIR 233 ++ L I Sbjct: 288 ESDLELVQLVGSESPIIN 305 >UniRef50_B7FVG3 DNA-directed RNA polymerase n=5 Tax=Eukaryota RepID=B7FVG3_PHATR Length = 1212 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 218/1406 (15%), Positives = 396/1406 (28%), Gaps = 302/1406 (21%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQ 69 + + L+ QLDSF +FI+ + R IQ G Sbjct: 27 TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVG----- 81 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 E R E+E V +I +VY+ + P Sbjct: 82 -----------YDDEAYDR-----------------EQEKETKFVFEIHFGQVYLSK-PT 112 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKG-----KTHSSGKVLYNARIIPYRGSWL 184 + + N + R + + + + G+ + G + Sbjct: 113 TVEKDGTITN-----MFPHEARLRNMTYSAPLYVDVDLNQYQVGREVNVNDPSEDLGEPV 167 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 E K+ L +P + + + DL + E Sbjct: 168 ATEHAKKEFL-------GYVPIMLRSLFCVLSDKDDADL----------------SDLGE 204 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID- 303 + + F I + KV + + R +K K V + + Sbjct: 205 CVYDQGGYFVINGSEKVIIAQERLSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPVSTL 264 Query: 304 -------------ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN------DLDHG 344 E + + ++ G+ + + D + Sbjct: 265 YIQMYHKGGRGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMM 324 Query: 345 PYISETLRVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 +L + AL I R E + L VG Sbjct: 325 DLFRPSLEEAFVIQRQDVALDFIGRR----GSARDVTKEDRMRYAQAILQKEVLPHVG-- 378 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 E I + KL+ R G+ E DD DH G +R+ G + Sbjct: 379 ---------TEEHCETKKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGL 429 Query: 464 FRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL---------- 511 FRV ++ + V++ L + I + I+ +K + Sbjct: 430 FRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNWGDKGMATKAG 489 Query: 512 -SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 SQ +++ S ++H RR + L R + R +H TH+G VCP ETPEG +G Sbjct: 490 VSQVLNRLTYASSLSHLRRCNT----PLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVG 545 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL--SAIEEGNYVIAQANSNLDEEGH 628 L+ +L++ A G + P + + T+ + + S I E N N N Sbjct: 546 LVKNLALMAYITT-GTAQVPVLEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHR 604 Query: 629 ----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 E + R + V + ++ + + L + + + Sbjct: 605 DPKALEETFRSLRRMVDIDAEVSI-VRDIADKEVRIYTDAGRICRPLFVVQEQKLAIKKH 663 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 Q E+ + G+V+Y+D + M P Sbjct: 664 HIMQLQ---------GMDPNEKKL-----TWTDLLMEGLVEYIDTEEEETTMV--AMEPN 707 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 + D PS LG + + Sbjct: 708 DLDSDD------------------------SYSSTYTHCEIHPSMILG-------VCASI 736 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 +P+ +N + ++ I+ R + P A+ Sbjct: 737 IPFPDHNQSPRNTYQSAMGKQ--AMGIYASNYQV--RMDTMAHVLHYPQKPLCTTRAMEF 792 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 L + + I + +DS + + + Sbjct: 793 LHFRELP-------------------------SGVNCIVGILVYTGYNQEDSLILNQSAI 827 Query: 925 SGTVIDVQVF---------TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 + + + G + E+ + + E L+ Sbjct: 828 DRGLFRSSYYRCYIDQEKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDDDGLVAP 887 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 + V K + + +++ + + Sbjct: 888 GTRVSGDDVLIGKTAPID------ATAGMPSR------YSKRDCSTSMKANEHGIVDNVL 935 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 I+ + + KV + R Q GDK A RHG KG I EDMP+ G D Sbjct: 936 ISTTKE----GYRFTKVRIRNVRTPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGIVPD 991 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I++NP +PSRM I Q++E LG G + +A V + + Sbjct: 992 IIVNPHAIPSRMTIAQLIECLLGKVVVFQGCEGDATPFTDVTVEDISTRLHAMGYQRHGN 1051 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 G P+ VF Sbjct: 1052 EALYQG---------------HTGRPLNARVF---------------------------- 1068 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 +G + +L HLVDDK+H+R+ G +++T+QPL G+++ GG R GEME Sbjct: 1069 -----------IGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMER 1117 Query: 1276 WALEAYGAAYTLQEMLTVKSD----DVNGRTKM------------YKN--IVDG-NHQME 1316 L +G A +++ V SD + R + ++ V + Sbjct: 1118 DCLITHGCANFMRDRFFVNSDQYRIHICERCGLTAQANLKKMTYECRSPMCVGRPTQICQ 1177 Query: 1317 PGMPESFNVLLKEIRSLGINIELEDE 1342 +P + +LL+E+ S+ I + + Sbjct: 1178 VEIPYAAKLLLQELNSMCIQTRIYTK 1203 >UniRef50_C7BEK8 DNA-directed RNA polymerase n=1 Tax=Pedinomonas minor RepID=C7BEK8_PEDMN Length = 1157 Score = 699 bits (1803), Expect = 0.0, Method: Composition-based stats. Identities = 310/1262 (24%), Positives = 520/1262 (41%), Gaps = 184/1262 (14%) Query: 139 NGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRI 198 N +++ V F + N + + F + Sbjct: 4 NNISKLLTPDFLEIQRVSFVKFLESGIINEIKRRNPITSSAKEYQIFFYPEAYQLEAPEF 63 Query: 199 DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 P +L +Y + L + + + + L + F + Sbjct: 64 S-----PKDALLYGKSYASRLFLPVQLTNQVTGEIKFQWVLLGTL-PLLTKRGHFILNGC 117 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 +V + + R + ++ K ++I + +++ + Sbjct: 118 PRVVINQLIRSPGVYYQKRLDSQ-KRDIFYADFICERGAWLRIEMDTSQRIWARMKRTPK 176 Query: 319 LDLLAKLSQSGHKRIETL----------FTNDLDHGPYISETLRV------------DPT 356 + +L L G + ++TL Sbjct: 177 IPVLILLQSMGMSLQTIFSSTSQRTILAKSLLPYEQKGKTKTLPKLVKAQNPLLLVRRHP 236 Query: 357 NDRLSALV----EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 + +AL I + E + F + YDL +GR++ N+ Sbjct: 237 VSQDTALKVLSALIQARTKKEILVNSEMGKKFLMKKFRNPRSYDLGFIGRLRLNKRFGLS 296 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 L+ +DI + LI + G +DDIDHL NRR+RS+GE+ + Q + L+R+E Sbjct: 297 IATSYRQLTAEDIFHSVNLLISVSQGVASLDDIDHLENRRVRSIGELLQIQLGLALLRLE 356 Query: 473 RAVKERLSLGDLDTL-----MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 + +++R S + + + I+ K ++ A++EFFGSS LSQF+DQ NPL+E+THK Sbjct: 357 KMIRDRSSFLLENNVSSVAKDIRSFISTKALNGAMREFFGSSPLSQFLDQTNPLAELTHK 416 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RR+++LGP G++RE AG VR +HP+HYGR+CPIETPEG N GL+NSL+VY++ ++ GF+ Sbjct: 417 RRLTSLGPSGVSRETAGMAVRGIHPSHYGRICPIETPEGQNAGLVNSLTVYSRVDQNGFI 476 Query: 588 ETPYRKVTDGVVTD--EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 ++P+ + +G + + +LSA +E + I + + + G D + R E Sbjct: 477 QSPFYLLNNGQIQKEANLTFLSAKDEMSKTIIPGDIHFNSLGFIENDSLPSRKNQE---- 532 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 QR + + Sbjct: 533 ------------------------------------FVRQQRGNIDLIAT---------- 546 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 S + ++ ++ +++ + M T Sbjct: 547 ------SPLQMISVATSLIPFLEHDDANRALMGSNMQRQAVP---------------TLY 585 Query: 766 NQMPCVSLG---EPVERGDVLADGPSTDLGELALGQNMRV--------AFMPWNGYNFED 814 + P V G + V + + Q + + F+P F + Sbjct: 586 AERPRVGTGLESKIVTDIGHIVQTRWSGYVSYVDSQKIIIQSFVKHSETFLPTQSIRFLE 645 Query: 815 SILVSE---RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN---VGEAALSKLDES 868 ++ S+ ++ D + ++ + E T + G + + Sbjct: 646 TVSTSKKYSSSLKTDSIEKVFLKSKPGELKTKLEEYEFKTVEYLLENYSGSNQSTFFVQK 705 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV G V GDIL + + +L LL A + + +D+ L +S + Sbjct: 706 PIVSEGDWVEAGDIL-ADGSASEKGELALGHNLLVAYIPWEGFNFEDAIL-----ISERL 759 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI----------LEAGLFSRIRAV 978 + ++T +EK + + + L++ L + + ++ G + + + Sbjct: 760 VTQDLYTSLHIEKYEMEIRETKFGLEKITNKLPDVRKKDLKNLDAQGIVKPGTWVQEGDI 819 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 LV K P +R L + + L + ++ K Sbjct: 820 LVGKVTPIRKKPLSPHERLLYDIVGKINPTVRDSSLRVPRGTQARVLDIQIIYSDEKTKL 879 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 G++ V V++ LA +RRIQ GDKMAGRHGNKG+IS+I PI+DMPY +GTP+DIVL Sbjct: 880 GEEFVGKVPLKVQILLAQRRRIQVGDKMAGRHGNKGIISRILPIQDMPYLPDGTPLDIVL 939 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NPLGVPSRMN+GQ+ E L +A + +G+ + + G + + Sbjct: 940 NPLGVPSRMNVGQVYECLLSLAGRYLGENYRVVPFDE--------------LFGPHISRS 985 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + S + + + L + G+ +++DGRTG Sbjct: 986 LTYSKLYESSLK-------------------------NKQHWLFNPNCPGKTKIFDGRTG 1020 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 E F++PVTVG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWAL Sbjct: 1021 ECFDQPVTVGEAYVLKLVHLVDDKIHARSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWAL 1080 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 E +GAAY LQE+LTVKSDDV GR K+ +I+ G + G PE F VL+KE++SL +++ Sbjct: 1081 EGFGAAYILQELLTVKSDDVKGRHKIMYSILTGKNM-TMGTPECFKVLVKELQSLCLDVG 1139 Query: 1339 LE 1340 + Sbjct: 1140 VY 1141 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 19/209 (9%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS- 72 F ++L P L IQ SF KF+E G+ + PI S + ++ + Sbjct: 2 SFNNISKLLT-PDFLEIQRVSFVKFLES------GIINEIKRRNPITSSAKEYQIFFYPE 54 Query: 73 -YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 Y+L P F ++ + G +Y++ L + ++L +IK Q V +G +PL+T Sbjct: 55 AYQLEAPEFSPKDALLYGKSYASRLFLPVQLTN-------QVTGEIKFQWVLLGTLPLLT 107 Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 G F++NG RV+++QL RSPGV++ S + ++ A I RG+WL E D Sbjct: 108 KRGHFILNGCPRVVINQLIRSPGVYYQKRLD---SQKRDIFYADFICERGAWLRIEMDTS 164 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQI 220 ++ R+ R K+P I+L+++ + + I Sbjct: 165 QRIWARMKRTPKIPVLILLQSMGMSLQTI 193 >UniRef50_P47715 DNA-directed RNA polymerase subunit beta n=2 Tax=Mycoplasma gallisepticum RepID=RPOB_MYCGA Length = 1390 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 358/1458 (24%), Positives = 615/1458 (42%), Gaps = 245/1458 (16%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 K +R+D+ K + L IQ++++++F+E++ LE S FPI+S +G Sbjct: 12 YSPKVVRRDYSKVHNKYNPLNLPGIQVNAYKQFLEKE------LEEIIGSYFPIKSPNGK 65 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYERE---APEGTVKDIKEQEV 122 +++ ++ +P +E TY A L V L LV ++ K + + Sbjct: 66 YSVEFHGMKILDPQITKEEASAESKTYDASLYVNLSLVNHQTGTVKKISKKSAKSKAEGI 125 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL----YNARIIP 178 Y +IPLMT+NG F++NG E+ +V+Q+ RSPG + + S+ + Y + P Sbjct: 126 YFADIPLMTENGAFIVNGIEKFVVAQIVRSPGAYILNKSQVKLSNSRKRNQEGYICEVFP 185 Query: 179 YRGSWLDFEFDPKDNLFVRIDR------RRKLPATIILRALNYTTEQILDLFFEK----- 227 +G+ + F + + R + T +L+A + +I ++F Sbjct: 186 SKGTLMLFYIAENKDFVQAVVRDVGGESAKVFSITTLLKAFGLSEIKIKEIFNNNDYILR 245 Query: 228 --VIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLI 285 + ++ E +L + S I + +++ + +L ++ +L+ Sbjct: 246 SLESEFYNEKQILNEADIAQLIRDIESDRISKVKSLPIDQKWKNLVLDWYKLNQEKQELL 305 Query: 286 EVP-VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG-------HKRIETLF 337 + + + A + +L L Sbjct: 306 NSSNPNPTKIESLNTHIGVVLRKLICEKAAKHVIQELSISTRSLDNVSQKEEISYQSILL 365 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRM---------------------------- 369 + Y + +L +Y+ Sbjct: 366 QHFFQKKRYDLSSAGRHKFVRKLRVSERLYQRTIAQDIKDLDGNVVIKQGTLMLKEQLDL 425 Query: 370 ------------MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE-EIEG 416 ++ + E + + E + ++ R + + + + E Sbjct: 426 FKRLSKEKRLDIIKQIDFINPELNTQFTDVNTYEEVQIYVNNDLRNETTQIIGIDGSNES 485 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 L+ D+I ++ ++++ G DDIDHLGN+R++ + E+ +++ + G++R+E+ +K Sbjct: 486 IETLTLADLISIVSYIVNLPFNIGLYDDIDHLGNKRLKLINELLKSKVQTGMMRIEKYIK 545 Query: 477 ERLSLGDLDT----------------------LMPQDMINAKPISAAVKEFFGSSQLSQF 514 ++L D + L + +IN KP +K+FF + QL+QF Sbjct: 546 DKLQTADGNNKLADQDAENDPDSDLGTKSSNDLTVKSVINPKPFQIVIKDFFNTHQLTQF 605 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 +DQ NPLSE+T+KRRISA+GPGG++RE ++RDVH +HYGR+CPIETPEG NIGLI S Sbjct: 606 LDQQNPLSELTNKRRISAMGPGGISREDPNLDIRDVHYSHYGRICPIETPEGMNIGLIMS 665 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLV 634 L+ YA ++ GFL TPY KV +G +TD++ +L+A+ E Y+IA+A+S Sbjct: 666 LAFYATIDKNGFLMTPYLKVENGKITDKVEHLTALREDEYIIAEASS------------- 712 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLR 694 YMDV+ ++ + + D Sbjct: 713 -----------------YMDVAKDGTINNEKIIARYRSSQD------------------- 736 Query: 695 ADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLT 754 + + S V+ ++ +++ + M Sbjct: 737 -----LYDPKQVDYIDVSPKQVVSVAASLIPFLENDDSSRALMGANMQRQATP------- 784 Query: 755 KYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFED 814 P L + D + Sbjct: 785 -----------LLKPYSPLVGTGVEYKIAQDSGMLVTAKNP------------------- 814 Query: 815 SILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIG 874 T ++ + + + V + ++S IV +G Sbjct: 815 -------------GTVTYVDASKITVKGEDNKSTD-YNLLKFVKSNKNTCYNQSPIVAVG 860 Query: 875 AEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF 934 ++ L +L + +L + +D+ + +S + V+ Sbjct: 861 DKIETNQAL-ADGPSMKNGELALGQNVLVGFTTWSGYNYEDAVI-----ISDRLFKDDVY 914 Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRIRAVLVAGGV 984 + +++ + ++ +D+ +E ++ G + +LV Sbjct: 915 SSIHIDEYTIECLRTKNGDEEITRDIPNISESAKRYLDEEGVIMVGAEVKEGDILVGKTS 974 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 +++ P ++ ++ L D+ KQ + L K R I GD+L Sbjct: 975 PKGQVELTPEEKLIQAILGDKVKQVRESSLKVPNGGDGIVAGIK----RFSIANGDELED 1030 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 VL++VKVY+ KR+IQ GDK+AGRHGNKG+ISKI EDMP+ E+GTP+DI+LNPLGVP Sbjct: 1031 DVLELVKVYVVQKRKIQIGDKVAGRHGNKGIISKIVAQEDMPHLEDGTPLDILLNPLGVP 1090 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA--------DVR 1156 SRMNIGQI E HLG AA+ + +++A + + + Sbjct: 1091 SRMNIGQIFELHLGYAARELAKAKLIEACFDKKLADQLDTVFGLEKSKTQSLIKNLVEHM 1150 Query: 1157 QKVDLSTFSDEE------------VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 + + +++ + + IATPVF+G ++K ++ + Sbjct: 1151 KSIGVTSLAQTKNRVRTIDIDIVLKQLGLTYDDLAFKIATPVFEGVNMEDLKAIMSEAGI 1210 Query: 1205 PTS---GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 G+ +L DGRTGE FE+P++VG MYMLKL+H+VDDK+HAR+ G YS +TQQPLGG Sbjct: 1211 DPDKTEGKFKLIDGRTGEPFEKPISVGIMYMLKLDHMVDDKIHARAVGPYSKITQQPLGG 1270 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE 1321 K+Q GGQRFGEMEVWAL+AYGAA+ L+E+LT+KSDDV GR Y IV G EPG+PE Sbjct: 1271 KSQNGGQRFGEMEVWALQAYGAAHNLREILTIKSDDVRGRNMTYNAIVKGLSIPEPGVPE 1330 Query: 1322 SFNVLLKEIRSLGINIEL 1339 SF +L KE++ LG+ + + Sbjct: 1331 SFKLLTKELQGLGMTLNV 1348 >UniRef50_A5IJW3 DNA-directed RNA polymerase subunit beta n=8 Tax=Thermotogaceae RepID=RPOB_THEP1 Length = 1263 Score = 695 bits (1794), Expect = 0.0, Method: Composition-based stats. Identities = 383/1432 (26%), Positives = 593/1432 (41%), Gaps = 272/1432 (18%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS- 61 + +R R FGK + L +P L+ IQ S+++F+E+ GL + PI S Sbjct: 2 KEISCGRRTRVSFGKTQEPLPIPDLVEIQKISYRRFLEE------GLLEVLKKFSPIYSQ 55 Query: 62 --------YSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 L++VS R+GEPV D EC+ +G+TYS P+ RL + Sbjct: 56 ATRSDLKKSDRGFALEFVSTRIGEPVVDPLECKAKGLTYSVPIYATARLTDMK------- 108 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 ++KE+EV++G IP MTD GTF+ING ERV+V+Q+ SPG++F S+ + Y Sbjct: 109 SGEMKEEEVFLGYIPYMTDRGTFIINGAERVVVNQIVVSPGLYFSSEY-----IDREEYG 163 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 +P RG+WL+ DP D + +K+ + L+ + Y ++ + + + Sbjct: 164 GYFLPSRGAWLEVILDPYDGVLYAGLDGKKVNLFLFLKTIGYEKDEDILSLYPTYLDADD 223 Query: 234 DNKLQMELVPERLRG------------ETASFDIEANGKVYVEKGRRITARHI-RQLEKD 280 ++ L + + L + + D+ + + + I + + Sbjct: 224 EDSLLLHVGSILLEDIYDGDRKIAEKWDILTKDLAERILMIDDINQIKIVHPIAQNTFEK 283 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGEL---ICAANMELSLDLLAKLSQSG-------- 329 ++L+ E + + + L + L +++ + Sbjct: 284 MLELVSSSGEEGEEEEEKTKIYGLNEVTVVDAYLEIFRRLRPEELPRINAAKRYLHDLFF 343 Query: 330 ------HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 + N+ YI + V+ D A ++Y P S Sbjct: 344 NPERYDLSEVGRYKVNERLRNAYIRYLIEVEG-EDPEEARKKVYNENSLVLKPLDIVLAS 402 Query: 384 LFENLFFSEDRYDLSAVGRMKFNR--SLLREEIEGSGILSKDDI---------------- 425 +F + + + + +EE + D+ Sbjct: 403 RILFDYFERRYVNDFEIDSYELRNLIRIFKEEYLEKRKTASYDLRKLVSVFRRNYGVTSD 462 Query: 426 ---IDVMKKLIDIRNGK--GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480 + ++ + +I D DHLGN+R+R+VGE+ + +F R ++A++ERL+ Sbjct: 463 LSVLAAIRYISNINKELPSIPFDTKDHLGNKRVRTVGELVQREFERLFARAQKAIQERLT 522 Query: 481 -LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 + L + Q +IN K I + V +FF +QLSQFMDQ NPLSE+THKRR+SA+GPGGL Sbjct: 523 LINSLSKVSIQSLINIKSIISTVNQFFAMNQLSQFMDQVNPLSELTHKRRVSAVGPGGLR 582 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 RE FE R+VH + YGR+CPIETPEG NIG I SL++Y + +EYGFL TPYRKV +G V Sbjct: 583 RESKVFEARNVHYSQYGRLCPIETPEGANIGFITSLAIYTKIDEYGFLMTPYRKVVNGKV 642 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 TDE+ YL A EE ++ I A + +DEEG + + Sbjct: 643 TDEVVYLRANEEEDFKIVPATTPVDEEG-----------------------NIIPERVVA 679 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 V L+P E S + Sbjct: 680 RVGEDIRLVPR---------------------------------EEVDFMDVSTKQPFSV 706 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 ++ +++ + M + P V G E Sbjct: 707 SASLIPFLEHDDASRALMGSNMQRQAVP---------------LLKAEAPFVGTGMEWEA 751 Query: 780 GDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV 839 + + D+ + +H + Sbjct: 752 AKNSGYVTLAEHDGIV---------------KEVDAARI-----------VVHRTDENGN 785 Query: 840 SRDTKLGPEEI--TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 G + + V + +++ IV G V GD + +L Sbjct: 786 LMYDDKGNPVVDEYRLLKFVRSNQDTMINQKPIVNEGDFVKKGDP-IADGPATDMGELAL 844 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 +L A + + +D+ L + VFT +E + + ++ Sbjct: 845 GRNILVAFMPWEGYNYEDAILVSQELLEE-----DVFTSIHIEVYETQARETRLGPEEIT 899 Query: 958 KDLSEE----LQILEAGLFSRIRA------------VLVAGGVEAEKLDKLPRDRWLELG 1001 D+ L+ L+ R+ A +LV + D P ++ + Sbjct: 900 ADIPNVSKELLKNLDENGIIRVGAYVVSDYGVGSQAILVGKVTPKGEGDTTPEEKIIRSV 959 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 + + + L + + + +L GVLK+V+VY+A ++ + Sbjct: 960 FGERGRDVKDTSLRLPHGVEGRVIRVDVYDQNDIA----ELGAGVLKLVRVYVASRKTLD 1015 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK+AGRHGNKGV+S I P EDMP+ +GTPV +VLNPLG+PS Sbjct: 1016 IGDKLAGRHGNKGVVSNILPKEDMPFLPDGTPVQMVLNPLGIPS---------------R 1060 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +G + L + G Sbjct: 1061 MNVGQILETHLGWLAK---------------------------------------LTGKW 1081 Query: 1182 IATPVFDGAKEAEIKELL----KLGDL-------PTSGQIRLYDGRTGEQFERPVTVGYM 1230 ATPVF+GAKE EI L K L +G++ L DGRTGE F+ PV VGYM Sbjct: 1082 FATPVFEGAKEDEILRPLYEERKKRGLHLGDDENNPNGKVVLRDGRTGEPFDNPVVVGYM 1141 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 YMLKL H+ +K+HARSTG YSL+ QQPLGGK+ FGGQR GEMEVWALEAYGAA+TL EM Sbjct: 1142 YMLKLVHIAKEKIHARSTGPYSLIHQQPLGGKSHFGGQRLGEMEVWALEAYGAAHTLAEM 1201 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 LT+KSDD+ GR + YK I+ + EPG+PESF VL+KE+R L +++ L DE Sbjct: 1202 LTIKSDDIKGRNEAYKAILKNMNIPEPGVPESFRVLIKELRGLALDVRLYDE 1253 >UniRef50_C7BEC3 DNA-directed RNA polymerase n=1 Tax=Oocystis solitaria RepID=C7BEC3_9CHLO Length = 1115 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 302/1227 (24%), Positives = 517/1227 (42%), Gaps = 167/1227 (13%) Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPA------TII 209 + +S L +I + K+ +L T I Sbjct: 2 YLPDFIEIQRNSFNALLKKGLIKEIKNRSPITNIKKNIELFFYPELYQLNPPNFTNKTAI 61 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 L+A Y + + + + + L L + F I + ++ + + R Sbjct: 62 LKAKTYACKLYIPVQLVNNTSKKIK-TQWVLLTNFPLMTKRGHFIINGSPRIIINQIIRS 120 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 + +++ K + + I+ + + + + +L L G Sbjct: 121 PGIYYQEVFDKKKKR-KYYADLISFRGTWLRLEIDKKKAIWARMKKTPKISILIFLQAMG 179 Query: 330 HKRIETLFTNDLDHGPYISETLR-VDPTNDRLSALVEIYRMMRPGEPPTR---EAAESLF 385 + ++H ++ + + AL +Y + P + T + Sbjct: 180 LTNQLIF--HSIEHSDFLKNSFSDEENLTTTEEALKLLYSEINPKKEETSIKSSMGQKFL 237 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 F + YDLS +GR + N L + L+ DI+ + LI + +G G++DDI Sbjct: 238 FRKFMNPRTYDLSELGRSRLNEKLGLSISKSKTTLTPHDILYAINYLIKLEHGFGKIDDI 297 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEF 505 DHL NRR+R+ GE+ +NQ +GL+R+E+ ++E+L + ++ Q++I K I+ A++EF Sbjct: 298 DHLKNRRVRASGEILQNQISLGLIRLEKLIREKLKK-NRKNIILQNLITTKAINGALREF 356 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 FGSSQLSQFMDQ NPL+EITHKRR++++GP G++RE AG +R +HPTHYGR+CPIETPE Sbjct: 357 FGSSQLSQFMDQTNPLAEITHKRRLTSIGPNGVSRETAGMALRGIHPTHYGRICPIETPE 416 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNL 623 GPN GL+NS++ YA+ N GFLETP+ K G + ++ + SA EE ++ ++ N Sbjct: 417 GPNAGLVNSITSYAKINSKGFLETPFYKTFKGQIQKKLKPLFFSAEEEETKILISSDLNS 476 Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 + F Sbjct: 477 SK--------------------------------------------FYFLPKKKIPTRFG 492 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 +Q + S + ++ ++ +++ + + M Sbjct: 493 TETQQTKKDQVEYSAI------------SQIQMISIATSLIPFLEHNDANRSLMGSNMQR 540 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 L K R T + G + D T G+ + V Sbjct: 541 QAV-----PLIKPERPVVGTGL-------EGRIISDSDHALQTQFTGYISYVSGKKIIV- 587 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFT-----------TIHIQELACVSRDTKLGPEEITA 852 + ++ L ++ + F+ + + + + + L E I Sbjct: 588 ---YTIKKKKNLSLNLQKSTKNSFFSEYLFPKKLKKNSTNKIKKNPLIKRNTLFIEIIKN 644 Query: 853 DIP--------NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 I + L + G + D L+ + + ++ + +L A Sbjct: 645 SIKKNEILLHTFQRSNQETLLTHYASICEGNWIQKND-LLADSSCSLKGEIALGKNILIA 703 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS--- 961 + + +D+ L ++ ++ ++T +E+ + + + L++ L Sbjct: 704 YMPWEGYNFEDAVL-----INERLVYEDIYTSIHIERFELEIRDTKFGLEKITNKLPEVP 758 Query: 962 -------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL 1014 +E I + G + +L+ +K +P ++ L + + + L Sbjct: 759 FSQLLHLDERGIAKIGSWVEEGTILIGKITPIKKKSLIPHEKLLYDIIGKKTPTTRDSSL 818 Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 ++ + + V +Y+A KR+IQ GDK++GRHGNKG Sbjct: 819 RAPKGLTGRIIHVEILETKNLPP---ESLFEGPGRVHIYIAEKRKIQVGDKISGRHGNKG 875 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 +ISKI P +DMP+ +GTPVD+VLNPLGVPSRMN+GQILE LG+A + + Sbjct: 876 IISKILPRQDMPFLPDGTPVDMVLNPLGVPSRMNVGQILECLLGLAGIFLNQQYKITPFD 935 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 + G + + + S + + + Sbjct: 936 E--------------KYGPEASRSLVFSKLYEARLKTGQK-------------------- 961 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 L + G+I+L+DGR G+ F++ T+G Y+LKL HLVDDK+HARSTG YSLV Sbjct: 962 -----WLFNPNFPGKIQLFDGRNGKCFDQHTTIGQAYILKLVHLVDDKIHARSTGPYSLV 1016 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQ 1314 TQQPL G+++ GGQR GEMEVWALE +G+AY LQE++T+KSDD GR ++ I+ Sbjct: 1017 TQQPLRGRSKHGGQRLGEMEVWALEGFGSAYILQELITIKSDDTKGRHQVINAILKNKSI 1076 Query: 1315 MEPGMPESFNVLLKEIRSLGINIELED 1341 G PE+F VL+KE++SL ++I + Sbjct: 1077 S-LGTPEAFKVLIKELQSLCLDIIVYT 1102 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 73/371 (19%), Positives = 132/371 (35%), Gaps = 21/371 (5%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P + IQ +SF +++ GL ++ PI + N EL + Y+L P F Sbjct: 3 LPDFIEIQRNSFNALLKK------GLIKEIKNRSPITNIKKNIELFFYPELYQLNPPNFT 56 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 + ++ TY+ L + ++LV T K IK Q V + PLMT G F+ING+ Sbjct: 57 NKTAILKAKTYACKLYIPVQLVNN-------TSKKIKTQWVLLTNFPLMTKRGHFIINGS 109 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R+I++Q+ RSPG+++ K K Y A +I +RG+WL E D K ++ R+ + Sbjct: 110 PRIIINQIIRSPGIYYQEVFDKK---KKRKYYADLISFRGTWLRLEIDKKKAIWARMKKT 166 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIR-DNKLQMELVPERLRGETASFDIEANGK 260 K+ I L+A+ T + I + ++ + E L + +I + Sbjct: 167 PKISILIFLQAMGLTNQLIFHSIEHSDFLKNSFSDEENLTTTEEAL--KLLYSEINPKKE 224 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 K R+ + + + T ++ Sbjct: 225 ETSIKSSMGQKFLFRKFMNPRTYDLSELGRSRLNEKLGLSISKSKTTLTPHDILYAINYL 284 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 + + I+ L + I + + E + R Sbjct: 285 IKLEHGFGKIDDIDHLKNRRVRASGEILQNQISLGLIRLEKLIREKLKKNRKNIILQNLI 344 Query: 381 AESLFENLFFS 391 Sbjct: 345 TTKAINGALRE 355 >UniRef50_P56299 DNA-directed RNA polymerase subunit beta n=1 Tax=Chlorella vulgaris RepID=RPOB_CHLVU Length = 1301 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 322/1287 (25%), Positives = 540/1287 (41%), Gaps = 149/1287 (11%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 I + + F+ + + + + L+ F P+ F + D +K Sbjct: 42 IPNLIDVQRQSFYSFIEYGLKEAFQKPLRFSTTKHD---LEIRFFPEGIQFRKPDFTQKQ 98 Query: 205 PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVE 264 ++ + + I K R L + ++P + F + +V + Sbjct: 99 AV-VLGKIYG-SAVYIPVGIHSKKSSTFRIEWLFVGILP--IMTRQGHFVVNGVSRVVLH 154 Query: 265 KGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI-CAANMELSLDLLA 323 + R + + + + K + + ++ + LL Sbjct: 155 QMVRNPGIYTLPIHPRTKI---GTLRIVPEKGGWIHITVDKKHRVWFLTRSLRRKVSLLI 211 Query: 324 KLSQSGHKRIETLFTNDLD-----------------HGPYISETLRVDPTNDRLSALVEI 366 L G + + H + + A + Sbjct: 212 FLQAVGIPFHDIFLRLEHSKILQNSFVAELGEGSARHDDVLERAGLYAHPATQEEAWQYL 271 Query: 367 YRMMRPGEPP-------TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 Y + P + A F + +++D+ L +GR +F + E + Sbjct: 272 YSHFKEYSPYAHKNLAAKEQTAREFFYSTLWNKDKLILGHIGRQQFREKIGSIEPLENTS 331 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 L+++D+++ + L+ + + K VD+ID L +RIR E G+ E + ++ Sbjct: 332 LTREDLLEATQALLSLMHKKRVVDEIDSLTQKRIRGCDEFLLEHLATGMKEFELFFRRKV 391 Query: 480 SL-----------GDLDTLMPQD-MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 + +L Q+ + +K +S + K FF S L QFMDQ N L+E THK Sbjct: 392 TFLPATKSITGAENPFRSLWRQNKAVFSKTVSKSWKRFFTSGTLGQFMDQTNSLAETTHK 451 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG-- 585 RR++ LGPGG++ ++ ++R +HPT+YGR+CPIETPEG N GL+NS +V + ++YG Sbjct: 452 RRLTVLGPGGISGKQTTIQIRGIHPTYYGRLCPIETPEGKNAGLVNSFTVLSVLSKYGAR 511 Query: 586 FLETPYRKVTDGVVTDEIHYL--SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 L TP+ +V G V + L S +E + A A+ L + + R + Sbjct: 512 TLTTPFYQVYKGQVQKTLPPLRVSPRQEYKLIEAPADIQLTAWNVLPKTHLPVRKELNFH 571 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 ++ V Q +SV SLIPFLEH+DANRALMG+NMQRQAVP L+ PLVGTG Sbjct: 572 SDVATRITTQSVGILQNISVATSLIPFLEHNDANRALMGSNMQRQAVPLLKPQAPLVGTG 631 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVI----------------------------K 735 +E V D + A + G + V +++I + Sbjct: 632 LESRVIGDVNHSMQASKTGFITKVSSTKIQVLSPRKTKAQVSVFSHVLFSLNKKKKKSLL 691 Query: 736 VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELA 795 +E + + I L + + Q + + + Sbjct: 692 NSEKQSFSKNGIFFIKTLQQKSNLKNIFFSAQKALYQENSSFDLKFEAQNRLFIPKMTFS 751 Query: 796 LGQNM--RVAFMPWNGYNFEDSILVSERVVQ--EDRFTTIHIQELACVSRDTKLGPEEIT 851 L QN ++ F+ + ++ ++ + + H + + R K+ Sbjct: 752 LAQNFSRKIPFLSFFLKKKKERPRNPKKFFRSSDSFVNWKHKKLHSEDFRKNKVEITTTY 811 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 + I + E I+ V GD L+ + +L+ + +L A + Sbjct: 812 SLIQYQRTNQSTCFSERPILPENEWVEKGD-LLADGASSSQGKLSIGQNVLVAYLPWEGY 870 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS---------- 961 + +D+ L ++D ++FT ++ A++ + L++ + Sbjct: 871 NFEDAILISQ-----RLVDQEIFTSLHMDHYDIAVQNTQYGLERITNLIPLKISDSTRDI 925 Query: 962 EELQILEAGLFSRIRAVLVAGGVEAEKLDKL---------PRDRWLELGLTDEEKQNQLE 1012 ++ L++ I + + G K+ L P ++ + L E+ + Sbjct: 926 YKMGNLDSRGLVEIGSWVEPGDYLVGKMSPLDPKSPPLQSPHEKLYNVILQREKTSFRNT 985 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 L ++ + +L+ V+V L +R+IQ GDKMAGRHGN Sbjct: 986 SLRVPKGVQGFVLGVQILPSQEPDVAALAEKDEILR-VRVLLLQRRKIQVGDKMAGRHGN 1044 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KG++S I P +DMPY +GTPVDIVLNPLGVPSRMN+GQILE LG+A + ++ L Sbjct: 1045 KGIVSLILPRQDMPYLPDGTPVDIVLNPLGVPSRMNVGQILECLLGLAGHFLHERYTTYL 1104 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 +Q GA+ + + S + Sbjct: 1105 FDEQY--------------GAEASRSLVYSKLYQASLKTRNP------------------ 1132 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 + + G+IR++DGRTG F++P+T GY Y+LKL HLVDDK+HAR TG YS Sbjct: 1133 -------WVFEPHHPGKIRVFDGRTGLTFDQPITAGYAYILKLVHLVDDKIHARPTGPYS 1185 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGN 1312 +TQQP+ G+A+ GGQR GEMEVWAL+AYGAA+TL E TVKSDD++GR + NI Sbjct: 1186 AITQQPVKGRARNGGQRLGEMEVWALQAYGAAHTLHEFFTVKSDDLDGRQQAVLNIYANK 1245 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIEL 1339 G PESF ++L+E+++L N ++ Sbjct: 1246 PVTT-GNPESFKLILRELQALCFNFQV 1271 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 59/361 (16%), Positives = 132/361 (36%), Gaps = 29/361 (8%) Query: 22 LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPV 79 +++P L+ +Q SF FIE YGL+ AF+ + + E+++ + +P Sbjct: 40 MEIPNLIDVQRQSFYSFIE------YGLKEAFQKPLRFSTTKHDLEIRFFPEGIQFRKPD 93 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 F ++ + G Y + + + + + + + +++G +P+MT G FV+N Sbjct: 94 FTQKQAVVLGKIYGSAVYIPVGI-------HSKKSSTFRIEWLFVGILPIMTRQGHFVVN 146 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV-RI 198 G RV++ Q+ R+PG++ + RI+P +G W+ D K ++ Sbjct: 147 GVSRVVLHQMVRNPGIY-----TLPIHPRTKIGTLRIVPEKGGWIHITVDKKHRVWFLTR 201 Query: 199 DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 RRK+ I L+A+ D+F +I N EL R + + Sbjct: 202 SLRRKVSLLIFLQAVGI---PFHDIFLRLEHSKILQNSFVAELGEGSARHDDV-LERAGL 257 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 + + E + + + + ++ + Sbjct: 258 YAHPATQEEAWQYLYSHFKEYSPYAHKNLAAKEQTAREFFYSTLWNKDKLILGHIGRQQF 317 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 + + + + + + L+ + + D + +L + + +R + Sbjct: 318 REKIGSIEPLENTSLT--REDLLEATQALLSLMHKKRVVDEIDSLTQ--KRIRGCDEFLL 373 Query: 379 E 379 E Sbjct: 374 E 374 >UniRef50_Q5ZZS1 DNA-directed RNA polymerase subunit beta n=34 Tax=Mycoplasma RepID=RPOB_MYCH2 Length = 1220 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 373/1372 (27%), Positives = 576/1372 (41%), Gaps = 238/1372 (17%) Query: 1 MVYSYTEKK----RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV 56 M + Y K R+ +G + L+ P L +SF F+ G+ AF + Sbjct: 1 MNHIYKLKSYGIGTDRRFYGVANKTLETPDFLDPVRESFDWFLH------VGIPEAFDRI 54 Query: 57 FPIQSYSGNSELQY--VSYRLGEPV---FDVQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 FPI S +G E+ + S R+ +P ++E +I+G TYSA + V L V E Sbjct: 55 FPIVSANGKLEISFRRGSLRVEKPENEYLAIREAKIKGKTYSARVYVTLVKVHSED---- 110 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 +++EQE+ + E P MT GTF+ING E+V+VSQL RSPGV F + + + Sbjct: 111 ---GEMEEQEILLAEFPFMTQGGTFIINGFEKVVVSQLIRSPGVCFRENVRNQQADD-LF 166 Query: 172 YNARIIPYRGSWLDFEFDPK----DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEK 227 IIP GSW++ D + RID+ + +P LRA+ +T E + F Sbjct: 167 NKVEIIPQLGSWMEIFHKVTGNQVDTVKFRIDKHKNIPLLSFLRAIGFTNETVRKYFGNS 226 Query: 228 VIFEIRDNKLQME--------LVPERLRGETASFD--IEANGKVYVEKGRRITARHIRQL 277 + ++E + + + + + + + R A R + Sbjct: 227 PELLESIRRHKLESLEENLELIYRIVRKDDRITEEGLKNLIPSIIFNERRYNLASTGRFM 286 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 + L+ E I+ +A+D + + L L + ++ I Sbjct: 287 LNAKLNLV----ERISQTYLAEDLVSKKNKILFKKGTYITRQLALEIQEKFNNEEI---- 338 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 ++ + + A R E E F Sbjct: 339 -----------PLSEIEGVDSTIYA--------RQLEITRNENLWKRFYVAIVKVWPNKK 379 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 S + + + + L DII ++ ++ + G+ DD D L N+RI SVG Sbjct: 380 SMLQESEPVNVIATDPNLNEKTLVLSDIIAIVSYYFNLLSNLGKSDDPDSLVNKRIVSVG 439 Query: 458 EMAENQFRVGLVRVERAVKERLS-LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMD 516 E+ +NQF + L ++E+ KE++S DL L + +IN KPI K FF SS+LSQFMD Sbjct: 440 ELLQNQFLIALTKIEKNSKEKISTKSDLSQLTVKSIINNKPIYNQFKNFFNSSKLSQFMD 499 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 Q NPL E+ KR++++LGPGGL R+ A FEVRDVH THYGR+CP+ETPEG NIGLI + S Sbjct: 500 QINPLGEMASKRKVTSLGPGGLNRDTAQFEVRDVHTTHYGRICPVETPEGQNIGLILNFS 559 Query: 577 VYAQTNEYGFLETPYRKVTDGVVT-DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 V+++ N+YGF+ TPY +V + +V ++H+L+A EE + AQ+ +D+ + D +T Sbjct: 560 VFSRINQYGFIITPYYQVKNRIVDYSKVHWLAASEEFDKSFAQSGVEIDQNNRIIPDKLT 619 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 R N+ + + ++ + Sbjct: 620 VRK--------------------------------------NQTYLVLDAEQVNYIDV-- 639 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 S + + + +++ + + M Sbjct: 640 ----------------SSMQMTSISASAIPFLENNDANRALMGSNMQRQAVP-------- 675 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 ++ P V+ G A N+R A Sbjct: 676 -------LIKSEAPLVATGIEEAVARFSA-------------TNLRAAIS---------- 705 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 + T + +++ + + N L K V +G Sbjct: 706 ----------GKVTYVDAKKIIIDDGEKPEIHYLRYFEKSNQETLILQK----PTVKVGD 751 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV-----ID 930 +V G L+ +L + +L A + +D+ + V V I Sbjct: 752 KVKKGQ-LICDGPSTDNGELALGKNVLVAFSTWYGYNYEDAIIISEKLVKDDVFTSIHIQ 810 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 Q + L E + + I+ G +LV + + Sbjct: 811 EQTIKFRSTKAGNDILTAEIPNASAKSRLHLDANGIVIVGSEVDTGDILVGRTSPKGEDN 870 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 ++ + + + L + E + ++ ++ + GD+L GV ++ Sbjct: 871 PTAEEKLMAAIWGKKALAQKDTSLRVKNGEGGTVIDVQILSRDQ----GDNLEEGVGMLI 926 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 K+ +A KR+I+ GDKMAGRHGNKGV+S I P+EDMP+ E+GTPVDIVLNP GVPSRMNIG Sbjct: 927 KILIAQKRKIKVGDKMAGRHGNKGVVSVILPVEDMPFLEDGTPVDIVLNPQGVPSRMNIG 986 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 Q+LE HLGM AK + K + ++ +++ A + + D Sbjct: 987 QVLELHLGMVAKKLKTKFVTPVFDGIKIETIKKLFDEANIPESGKFKLFDG--------- 1037 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 I+ F+ PV+VGYM Sbjct: 1038 -----------ISGQAFEN----------------------------------PVSVGYM 1052 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 YMLKL H+VDDKMHARS G YSL TQQPLGGK+Q GGQRFGEME WALE++GA L E+ Sbjct: 1053 YMLKLLHMVDDKMHARSIGPYSLTTQQPLGGKSQNGGQRFGEMETWALESFGATSVLSEL 1112 Query: 1291 LTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 LT KSD++ GR +Y NI+ G PG PESFNVL E+R L I +E+ Sbjct: 1113 LTYKSDNIQGRNLLYNNIISGGKIPSPGTPESFNVLAYELRGLLIKLEVHKN 1164 >UniRef50_A5FRK5 DNA-directed RNA polymerase subunit beta n=63 Tax=Bacteria RepID=RPOB_DEHSB Length = 1273 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 367/917 (40%), Positives = 506/917 (55%), Gaps = 74/917 (8%) Query: 181 GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 G+ L+ EF + R+ R Y+ + + Sbjct: 62 GNRLELEFIGYEFREPRLSE-----YECTQRDQTYSVPLYVKARLIVKTTGEIKEPFDLF 116 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 L +F +V V + R + + I + + Sbjct: 117 FGDIPLMTALGTFITSGTERVVVSQLLRSPGVYFTISDDPATGRPLCHTNLIPSRGAWLE 176 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP-----YISETLRVDP 355 + + + + + + L G+ + YI ++ DP Sbjct: 177 FETSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDP 236 Query: 356 -TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 D +SAL++IY +RPG+PP + A L +FF YDL VGR K NR L Sbjct: 237 LIKDEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELPSR 296 Query: 415 E--GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 E + L+++DI+ +++++I + NG+ DDIDHLGNRRIR+VGE+ +NQFR+GLVR+E Sbjct: 297 EVGENRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLE 356 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532 R +ER+S+ +L+ + P ++N +P+ +AVKEFFG SQLSQFMDQ NPL+EIT+KRR+SA Sbjct: 357 RVARERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQFMDQTNPLAEITNKRRLSA 416 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 +GPGGL+RERAGF+VRDVH +HYGR+CPIETPEGPNIGLI SL+ Y++ N YGF+ETPYR Sbjct: 417 MGPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIGLIGSLATYSRINRYGFVETPYR 476 Query: 593 KVTDGV---------------------------------------------------VTD 601 KV + V+ Sbjct: 477 KVYSKLKNNDKKLVGLKLKTEISEKGKVLAAAGSTISEDSFKIISKLPECDISVMPFVSA 536 Query: 602 EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 E+ Y+ A EE Y+IAQAN+ LDE+G+F++D + RS + D++DYMDVS +Q+ Sbjct: 537 EVKYMPADEEDRYIIAQANTRLDEKGYFLDDRIEARSAERYVVEPPDKIDYMDVSPKQIF 596 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 SV ASLIPFLEHDDANRALMGANMQRQAVP LRA+ P+V TGMER A SG AK Sbjct: 597 SVAASLIPFLEHDDANRALMGANMQRQAVPLLRAEAPMVATGMEREAARYSGQVIFAKHA 656 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 GV V + +I+I+ E G D Y L K+ R+NQ TCINQ ++ G+ + G Sbjct: 657 GVASSVTSEKIIIRT-------AEGGHDEYLLKKFVRTNQGTCINQHAIINKGQKIAAGQ 709 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 VLAD +T+ GELALGQN VAFM W G+N+ED+I++SER+V+ED FT+IHI + +R Sbjct: 710 VLADSSATENGELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHELEAR 769 Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 DTKLG EEIT DIPNVGE +L +LDE GI+ IGAEV DILVGK+TPKGET+L+ EEKL Sbjct: 770 DTKLGVEEITRDIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKL 829 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD-GVEKDKRALEIEEMQLKQAKKDL 960 LRAIFGEKA +VKD+SLR+P+G G VI+V++F+RD G + R + ++ + Q +K Sbjct: 830 LRAIFGEKAREVKDTSLRMPHGEWGKVINVRIFSRDSGDDLPARVNKWVQVWVAQKRKVS 889 Query: 961 SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020 + G I + + D P D L + + N + L Sbjct: 890 VGDKLAGRHGNKGVISIIAPVEDMPY-LPDGTPVDVVLN-PIGVPSRMNLGQILETHLGW 947 Query: 1021 LKHEFEKKLEAKRRKIT 1037 H ++ Sbjct: 948 AGHLLGFRVATPVFDGA 964 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 101/365 (27%), Positives = 172/365 (47%), Gaps = 35/365 (9%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN-SEL 68 IRK + + P+V++VP L+ +QL SF F E+ GL + PI+ + GN EL Sbjct: 14 VIRKSYAQLPEVVNVPNLIEMQLQSFVWFQEE------GLRELIEEISPIKDFVGNRLEL 67 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 +++ Y EP EC R TYS PL VK RL++ + + +++ G+IP Sbjct: 68 EFIGYEFREPRLSEYECTQRDQTYSVPLYVKARLIVKTTGEIK------EPFDLFFGDIP 121 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 LMT GTF+ +GTERV+VSQL RSPGV+F ++G+ L + +IP RG+WL+FE Sbjct: 122 LMTALGTFITSGTERVVVSQLLRSPGVYFTISDDP--ATGRPLCHTNLIPSRGAWLEFET 179 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTE-QILDLFF---------------EKVIFEI 232 +D + V+ID RRK+P + +LRA+ Y+ + IL+LF ++ Sbjct: 180 SNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLIK 239 Query: 233 RDNKLQMELVPERLRGETASFDI--EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 + +++ G+ + D + +++ + + R ++L E Sbjct: 240 DEISALIDIYSRLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELP--SRE 297 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 + + ++ I +I N + + D + L + + L N G E Sbjct: 298 VGENRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRIGLVRLER 357 Query: 351 LRVDP 355 + + Sbjct: 358 VARER 362 >UniRef50_B3L0J5 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=B3L0J5_PLAKH Length = 1371 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 219/1462 (14%), Positives = 439/1462 (30%), Gaps = 278/1462 (19%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 + E+ + L++ Q++S+ FIE + I Sbjct: 65 DHDEEERITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQ-------------EIID 111 Query: 62 YSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 E++ + Q R E + + + +K + Sbjct: 112 EHPALEIR-------------PQAQYRS----------------EGDEQKNVMYALKFGQ 142 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 + + + P + N T + + Q R + + S + + Sbjct: 143 LSL-DRPFYDER-----NLTNKNLWPQEARLRNLTYSSAIYIDIEQSTYVVDESSGSQ-- 194 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 ++ RI+ ++P + + + Sbjct: 195 ------ILKDKFIYERIN-LGRIPLMLKSMFCWTKGLPESE----------------IAD 231 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV---- 297 + E + F + KV V + R +K K V + Sbjct: 232 MGECAFDQGGYFIVNGGEKVLVAQERMAHNFIYVFKKKQPSKFGWVAEIRSQMERSQATS 291 Query: 298 AKDYIDEST------------GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH-- 343 A ++ + + + + G + + Sbjct: 292 AFSVKMKTKTGSRGSSVRTGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFN 351 Query: 344 GPYISETL-----RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 + TL + L I + P + E + L Sbjct: 352 DKMMINTLRETLEECIDYPTQDICLDFIGKR----GPTVGASREKRILYAKELLRKEVLP 407 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 +G G I ++ +L+ G+ + DD DH G +R+ G Sbjct: 408 HMG-----------TGPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGP 456 Query: 459 MAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINA-KPISAAVKEFFGSSQL---- 511 + + F ++ + VK L + + + I+ ++ + Sbjct: 457 LMASSFSTYFRKMAKDVKRVLQRQIDNNKPFDVAGAVRSCSQITQGMQYQLATGNWGKDK 516 Query: 512 ---------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 562 +Q +++ S ++H RR++ L RE + R +H TH+G +CP E Sbjct: 517 DGKVIRTGVAQVLNRLTYSSCLSHLRRLNT----PLGREGKMAKPRQLHNTHWGMICPFE 572 Query: 563 TPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN 622 TPEG ++GL+ +LS+ + G + + + + V N Sbjct: 573 TPEGQSVGLVKNLSLMCDISV-GTSTNNIFEFLLEWGLESLDEVPPQLMKEKVKLFLNGK 631 Query: 623 LDE----EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 + +E L R + + S + V ++ ++ + + L + Sbjct: 632 WVGCFNQIDNLIETLYELRRRCDISPEASI-VRDVNSKEIKIFTDSGRAMRPLYVVKNVK 690 Query: 679 ALMGANMQR------QAVPTLRADKPLVGTGMERAVAVDS-------------------- 712 + + A P L+ G+ + + Sbjct: 691 GENKLKLTKEHVKNMMAYPETYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYH 750 Query: 713 ---------GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 + ++ + D ++ + M G IY R + Sbjct: 751 NNYTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMG--IYVTNFNIRLDTLA 808 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 + P L EL G N VA M + GYN EDS+++++ + Sbjct: 809 HLLYYPQRPLVCTKVM-------EYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSI 861 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEIT-----ADIPNVGEAALSKLDESGIVYIGAEVT 878 F ++ + + E + N+ +KLD G++ G V Sbjct: 862 DRGLFRSVFYRTYTSEEKQQGSLIIESFEKPSIRYVKNLKRGDYTKLDNDGLIAPGIRVL 921 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAI-FGEKASDVKDSSLRV--PNGVSGTVIDVQVFT 935 G DI++GKV+P E + + + I G + + + + G+V++ + Sbjct: 922 GDDIIIGKVSPNIEDEDDIVIQRMPNIQMGYNSGASTSNGFMIGKESSAGGSVLNGSASS 981 Query: 936 RDGVEKDKRALEIEE--MQLKQAKKDLSEELQILEAG-------LFSRIRAVLVAGGVEA 986 G + + D + +G + + + + Sbjct: 982 VCGSVSSSPYSPSTMGGSNMMDSMPDSPVSDRYSSSGPVGSATVGPASVSSSTPSNTTIF 1041 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD----- 1041 + + + G T + + K+ + + ++ Sbjct: 1042 RSGNTISSVNSPQYGTTIVSGSTKDDLEIPTLTISTSNILKQYKKDCSLSLRENENGVID 1101 Query: 1042 -----LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 K KV + R Q GDK A RHG KG I EDMP+ +GT DI Sbjct: 1102 TVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSDGTFPDI 1161 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 ++NP VPSRM IG ++E G A G + +A + V ++ + + Sbjct: 1162 IMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSKITVQEISQRLHNLGYEKYGND 1221 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 + +G+ Sbjct: 1222 VLYNG--------------------------------------------HNGK------- 1230 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 + + +G Y +L H+V+DK+HARS G +++T+QP G+++ GG RFGEME Sbjct: 1231 ---MLKSKIFIGPTYYQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERD 1287 Query: 1277 ALEAYGAAYTLQEMLTVKSD----DVNGRTKMYK------------NIVDGNHQMEPGMP 1320 + ++G+A L+E L +SD V + + + +P Sbjct: 1288 CMISHGSAKMLKERLFEESDAYRVHVCDNCGLCCIADINKNAYECTVCNSKTNISQIYIP 1347 Query: 1321 ESFNVLLKEIRSLGINIELEDE 1342 + +L +E+ ++ I +L E Sbjct: 1348 YACKLLFQELMTMAIYPKLVLE 1369 >UniRef50_Q5KIB7 DNA-directed RNA polymerase n=95 Tax=Eukaryota RepID=Q5KIB7_CRYNE Length = 1193 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 198/1390 (14%), Positives = 398/1390 (28%), Gaps = 293/1390 (21%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 E + + L+ QL+SF +FIE + I Sbjct: 44 DEDEPISQEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQ-------------EIVDDH 90 Query: 64 GNSEL-QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 L Q+ Y + + E+ Sbjct: 91 SRLTLDQFTQYT------------------------------------GVAGDETRRYEI 114 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 G+I + ++G ++ Q R + + + + + P Sbjct: 115 SFGQI-YLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPVEAD 173 Query: 183 WLDFEFDPKDNLFVRIDRR--RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 W D + ++ K+P + Sbjct: 174 WQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQC----------------H 217 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + E + F I + KV + + R T L K E + K Sbjct: 218 EIGECPYDQGGYFIISGSEKVLIAQERMATNHVFVFL-KAAPARFTYFAEINSQKEKGGR 276 Query: 301 YIDESTGELICAANMEL--SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + + + A+ + + ++ + + + + Sbjct: 277 VANHTEVRMYARASGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHIC---FGA 333 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 AL+E+ + E F +DR Sbjct: 334 EDEALLEMLQ--------------PSIEESFAVQDR------------------------ 355 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 + D I G+ + +R R+ ++ +F + E ++ Sbjct: 356 -DTALDFI-----------GRRGQHEK-APRAQRQRAAFDILHKEFLPHVSTAEGFESKK 402 Query: 479 ------LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL----------SQFMDQNNPLS 522 + + I I+ +K + SQ +++ S Sbjct: 403 AYFLGYMCVEQNKEFALNMAIRPNTITDGLKYALATGNWGKRDNTRAGVSQVLNRYTFAS 462 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++H RR + + R+ + R +H TH+G VCP ETPEG GL+ +L++ + + Sbjct: 463 TLSHLRRTNT----PIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYIS 518 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTCRS 638 G P + + +++ + N +L+ R Sbjct: 519 V-GSYSAPVMEFLEEWGLEDLSE--YQDAPTATKVFVNGVWMGIHRDAPTLHNNLLQMRR 575 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 G+ V + ++ + + L D + AD+ Sbjct: 576 GGQLKYEVSI-VRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEG 634 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR---IVIKVNEDEMYPGEAGIDIYNLTK 755 L+ SG G+V+YVDA+ I+I + +++ + L + Sbjct: 635 LL-----------SGAWDKLLSEGIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVR 683 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 ++ + + ++ + PS LG + + +P+ +N Sbjct: 684 DRAAHNLESFDPAARIKSTVWSQQYTHMEIHPSMILG-------VCASIVPFPDHNQSPR 736 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 + ++ + R + P ++ L S + Sbjct: 737 NTYQSAMGKQAMGVCL----TNYQLRMDTMVNVLYYPQKPLATTRSMEYLKFSELPA--- 789 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF- 934 + + AI + +DS + + + + F Sbjct: 790 ----------------------GQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLYFR 827 Query: 935 TRDGVEKDKRALEIEEMQLKQA------KKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 + EK K ++ E ++ K + L+ + + K Sbjct: 828 SYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDDILIGK 887 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 LP D EE + + ++ + ++ + ++ + Sbjct: 888 TAPLPED--------SEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGE----GNM 935 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 VK+ + R Q GDK A RHG KG I EDMP+ G DI++NP +PSRM Sbjct: 936 FVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMT 995 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEE 1168 IG ++E L + G + +A + V + + ++ Sbjct: 996 IGHLVECLLSKVSTLTGAEGDATPFTELTVEAVSKVLRAKGYQSRGFEVLYHG------- 1048 Query: 1169 VMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVG 1228 G + V G Sbjct: 1049 --------HTGRKLQAQV---------------------------------------YFG 1061 Query: 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ 1288 Y +L H+VDDK+HAR+ G ++T+QP+ G+++ GG RFGEME + ++G A L+ Sbjct: 1062 PTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLK 1121 Query: 1289 EMLTVKSD----DVNGRTK------------MYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 E + SD V + + +P + +L +E+++ Sbjct: 1122 ERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQA 1181 Query: 1333 LGINIELEDE 1342 + I + E Sbjct: 1182 MNIACRMYGE 1191 >UniRef50_A6BM50 DNA-directed RNA polymerase subunit beta n=96 Tax=Embryophyta RepID=RPOB_GNEPA Length = 1108 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 351/1184 (29%), Positives = 546/1184 (46%), Gaps = 150/1184 (12%) Query: 175 RIIPYRGSWLDFEFDPK-DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 I ++F FD + I + + + L ++++ + FF + Sbjct: 39 PKIANTQKEVEFLFDKNYKIIEPSIKEKD-----AVYQRLTFSSKLFVPAFFIYWNKIKK 93 Query: 234 DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 + + +P L +F I N +V V + R + K + + Sbjct: 94 KKIIYLGEIP--LMNNNGTFLINGNYRVVVNQLIRSPGIYYSLERKRTGNIYTSTLISDC 151 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE--TLFTNDLDHGPYISETL 351 G + + + + + +S+ + + I T + + I Sbjct: 152 GGRLKFEIDIKQNIWIRISRKKNVSILVFFFAMGLDIEEILKNTYYIKGFEGWGLICNEK 211 Query: 352 RVDPTNDRLSAL----VEIYRMMRPGEPPTREAAESLFENLF--FSEDRYDLSAVGRMKF 405 + + A+ E+ + E+ F F R L +GR Sbjct: 212 LKHKLSRKKGAIFTFYEELGSRGDNNDFVFSESLSESLYKKFTNFLSKRCKLGRIGRRNL 271 Query: 406 NRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 N+ L E + L D++ ++ LI + G G VD+IDHL NRR SV ++ + + Sbjct: 272 NKKLNLEIPDNEIFLLPQDVLAIIDYLIKVSYGVGTVDNIDHLQNRRFFSVADLLKKEVG 331 Query: 466 VGLVRVERAVKERLS-------LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQN 518 + L RV+ +++ + + ++P+ + + I+ +K FFG LSQF++Q Sbjct: 332 LALNRVKVLIQKTMQTIEMLRKKQNKRIMLPEIPLVSTQITKTLKHFFGLHPLSQFLEQT 391 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 N L+EI H R++S LGPGGLT A F RD+HP++YGR CPI TPEG N GLI SL++ Sbjct: 392 NSLAEILHARKVSFLGPGGLTERTANFRARDIHPSYYGRFCPINTPEGQNAGLIASLAIS 451 Query: 579 AQTNEYGFLETPYRKVTDG-VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 A+ N +GFLE+P+ V +I YLS E+ Y IA N ++ + + Sbjct: 452 ARIN-FGFLESPFYNVAKKYQKAKKIVYLSPSEDVYYRIALGNCLSVDQKIPEKKNTPTQ 510 Query: 638 SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK 697 E + +Q+ + Q S+G SLIPFLEH+DA RALMG+NMQRQAVP+++ +K Sbjct: 511 YHQEFLSIAWEQIHFRCFLPLQYFSIGVSLIPFLEHNDATRALMGSNMQRQAVPSVQPEK 570 Query: 698 PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYT 757 +VGTG+E VA+DSG A++ + G +QY DA+ IV + + L Y Sbjct: 571 CIVGTGLEGQVALDSGALAISTQEGRIQYSDAATIVSVL--------KGNTTQTELQIYQ 622 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 RSN NT ++Q S + V +G +LADG + GE+ LG+N+ VA+MPW GYNFED+IL Sbjct: 623 RSNSNTLMHQKTHASQAKYVRKGQILADGAAMLGGEICLGKNILVAYMPWQGYNFEDAIL 682 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 +SE ++ +D FT+ HI E++T +IP + +L LD++G+V +G+ V Sbjct: 683 ISECLIYKDIFTSFHITRYETTI--CTAECEKMTREIPRLATYSLRHLDKNGLVRVGSWV 740 Query: 878 TGGDILVGKVTPKGETQLT--PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 GD+LVGK+ P+ + PE +LL+ +F +K++ LR G VIDV Sbjct: 741 QPGDVLVGKLRPRSSEDFSRFPELRLLQDLFCTSP--IKETCLR--ANGKGRVIDVNWSK 796 Query: 936 RDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 K +E D D Sbjct: 797 LQAFCK----------------------------------------DDLEKGHQDDDTED 816 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 + E E+ ++ QL E ++RKI GD +A V + Sbjct: 817 IYDEA----EDALEKVYQLNNYNLSSDSEKVHVYLLEKRKIQVGDKVAGRHGNKGIVSIV 872 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 + R +DMP+ ++G +D+VLNPL VPSRMN+GQI E Sbjct: 873 LSR------------------------QDMPFLQSGISLDMVLNPLSVPSRMNVGQIFEC 908 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 LG+A + ++ + + A + Sbjct: 909 LLGLAG-TMNKHYRIPPFDERYEQEASRKLVFYELYKASEQTANP--------------- 952 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 + +L G+ +++DGRTGE FE+PVT G Y+LKL Sbjct: 953 ------------------------WIFELEHLGKTQIFDGRTGEIFEQPVTTGNAYILKL 988 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H V+DKMHARSTG+Y+ +TQQP+ GK++ GGQR GEMEVWALE++G AY L+EMLTVK+ Sbjct: 989 IHQVNDKMHARSTGNYARITQQPVQGKSKGGGQRLGEMEVWALESFGVAYVLREMLTVKA 1048 Query: 1296 DDVNGRTKMYKNIVDGNHQMEP-GMPESFNVLLKEIRSLGINIE 1338 D + R K+ ++I+DG+ + ESF VL KE+ SL + + Sbjct: 1049 DHIRARKKILRSILDGHSVPKADSATESFRVLSKELNSLALELN 1092 Score = 146 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 78/406 (19%), Positives = 153/406 (37%), Gaps = 32/406 (7%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY-VSY 73 F ++ ++ +P IQL+ F +FIE D L F I + E + +Y Sbjct: 3 FDEKKEMFTIPEFGQIQLEGFCRFIEYD------LLDKFVKFPKIANTQKEVEFLFDKNY 56 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 ++ EP ++ + +T+S+ L V + + + + + Y+GEIPLM +N Sbjct: 57 KIIEPSIKEKDAVYQRLTFSSKLFVPAFFIYWNKIKKKKII--------YLGEIPLMNNN 108 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GTF+ING RV+V+QL RSPG+++ ++ + +Y + +I G L FE D K N Sbjct: 109 GTFLINGNYRVVVNQLIRSPGIYYSLERKR----TGNIYTSTLISDCGGRLKFEIDIKQN 164 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +++RI R++ + + A+ E+IL + FE +L + R + A F Sbjct: 165 IWIRISRKKNVSILVFFFAMGLDIEEILKNTYYIKGFEGWGLICNEKLKHKLSRKKGAIF 224 Query: 254 D------IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 + +V + + + + + + K ++ Sbjct: 225 TFYEELGSRGDNNDFVFSESLSESLYKKFT--NFLSKRCKLGRIGRRNLNKKLNLEIPDN 282 Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 E+ L++ G ++ + +++ L+ + V I Sbjct: 283 EIFLLPQDVLAIIDYLIKVSYGVGTVDNIDHLQNRRFFSVADLLKKEVGLALNRVKVLIQ 342 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 + M+ T E + +S Sbjct: 343 KTMQ-----TIEMLRKKQNKRIMLPEIPLVSTQITKTLKHFFGLHP 383 >UniRef50_B5IGJ5 DNA-directed RNA polymerase n=3 Tax=Euryarchaeota RepID=B5IGJ5_9EURY Length = 1201 Score = 670 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 213/1367 (15%), Positives = 425/1367 (31%), Gaps = 216/1367 (15%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 +L +++ + S+ I ++ + + + + G Sbjct: 4 IVDILFKKSVVNHHIASYNDLIPTPDNPNSVMQEIVDTT-KVTDEDPPGVITLDRTKTGG 62 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 + + Y +R+ E + G I E + ++ + Sbjct: 63 KTIKIVFGRNND--YWDVNEPTIRIGRPEIKEATGATVQITPMEARLRDLSYLAP----- 115 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 I G + Sbjct: 116 ---LYLKIKVLECDDAGCYEREP------------------------------------E 136 Query: 198 IDRRRKLPATIILRALNYTTEQI---LDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + + P + + + I LD + K ++E V E F Sbjct: 137 MVKIGDFPVMVKSKICTLHEDNIDDYLDSISKDKDILNWPYKQKLEYVGEDPDDPGGYFI 196 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVV-AKDYIDESTGELICAA 313 I + +V V R + + + ++E + + A +++ + +I + Sbjct: 197 IGGSERVLVSLEDLAPNRVLVEKNERYNTVVETAKVFSQRRGYRALTIMEKKSDGIIVVS 256 Query: 314 NMEL--SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + ++ L+ + G ++ + ++ + L VE ++ Sbjct: 257 VPAVAGTIPLVILMKALGLEKDQDIYRAIVSDEKMSVIALANIEE-------VENDKLYP 309 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR---SLLREEIEGSGILSKDDIIDV 428 P T+ A E F + + + + I + + Sbjct: 310 PNGIRTQRDAIEYLEKRFAAGQAKEYREKKISQILDSSLLPHLGTSKEDRIKKAYYLGRM 369 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDT 486 ++++++ G + DD DHL N+R++ G++ E FR+ + + +K +L Sbjct: 370 ARRVLELHLGLRKEDDKDHLANKRLKLSGDLLEELFRMAFEALMKDLKYQLERTYNRKKG 429 Query: 487 LMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPGGLT 539 + + I ++ + + SQ +D+ + +S ++H RR+ LT Sbjct: 430 IRIRVSIRQDVLTQKIMHAMSTGNWVGGRTGVSQLLDRTSHMSTLSHLRRV----ISPLT 485 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV 599 R + FE RD+HPT +GR+CP ETPEG N GL+ + ++ +E G+ E K+ G+ Sbjct: 486 RSQPHFEARDLHPTQWGRLCPNETPEGQNCGLVKNAALIIDVSE-GYPEEDVLKILKGLG 544 Query: 600 TDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQ 659 +E Y + Y+ + ++ + R KG S + D + Sbjct: 545 VEERQYETGELARVYLNGNLVGYHKDGLALTNEIRSRRRKGLISHQINIRYDDT-TNEVM 603 Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA-VA 718 + S + L + + + + LV G+ + + A +A Sbjct: 604 INSDKGRIRRPLLVVENGNVKYTSRHRELLRRGKMDIEDLVREGVVEWIDAEEEENAYIA 663 Query: 719 KRGGVVQ--YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 V R++ + + + M PGE C + Sbjct: 664 VYAYDVPERCPHCGRVLGRNDVEWMNPGEGEKVTLRCKH--------CGAEFGVEKK--I 713 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 + L P LG +P+ +N I + ++++ + Sbjct: 714 TKEHTHLEIDPLLILG-------AVAGCVPYPHHNSSPRITMGAAMLKQSLG----LPAA 762 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 R G P V + ++ + Sbjct: 763 NYRRRPDTRGHLLHYPQAPIVRTKTMDFVNF-------------------------MRRP 797 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK----RALEIEEMQ 952 + + AI +++D+ + V F E+ + + + E Sbjct: 798 AGQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRYPGGQEDKFEIPS 857 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 + ++L+ + G V K Sbjct: 858 PDVRGAMTEDRYKLLDEDGLISPEVYVKGGDVLIGKTSPPRFLEE-------------ES 904 Query: 1013 QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 +L + + E + + ++ ++VKV + +R + GDK A RHG Sbjct: 905 ELLGPQKRRESSVTMRPEEEGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHGQ 964 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KGV+ I P EDMP+ E+G D+++NP +PSRM +G ILE G G ++ + Sbjct: 965 KGVVGAIIPQEDMPFTESGIIPDLIINPHAIPSRMTVGHILEMIGGKVGSLEGRFVDGTV 1024 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 + LRE + + D G I +F Sbjct: 1025 FSGEPEKALREALVKNGFKYNGKEIMYDGI---------------TGRKIEAEIF----- 1064 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 VG +Y KL+H+V K HARS G Sbjct: 1065 ----------------------------------VGVIYYQKLHHMVAGKFHARSRGPVQ 1090 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--------- 1303 ++T+QP G+++ GG RFGEME L +GAA +++ L SD Sbjct: 1091 ILTRQPTEGRSRLGGLRFGEMERDTLIGHGAAMVIKDRLLDNSDGTVLYVCGNPECGHIA 1150 Query: 1304 ---------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + + +F ++ E+ SLG+ + ++ Sbjct: 1151 MFDRKRGILRCPVCGNTTNIYPIETSYAFKLMHDELASLGVIMRMKV 1197 >UniRef50_Q06J17 DNA-directed RNA polymerase subunit beta n=1 Tax=Bigelowiella natans RepID=RPOB_BIGNA Length = 1099 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 323/1200 (26%), Positives = 542/1200 (45%), Gaps = 126/1200 (10%) Query: 157 FDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYT 216 F + K + + I LD + K L + LP + + Sbjct: 7 FFPNLLKLQRKSFLTFLKYGIKKEIKKLDITKNKKKLLVYPNLFQLNLPTYTCNECVITS 66 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 +L + +D + L + +F + +V + + R + + Sbjct: 67 KTYNCELVIPIRLISYKDEIEWITLTNIPIMTNKCNFITNGSPRVIMSQITRAPGIYYHK 126 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 ++ + IA + + + + L L G + + Sbjct: 127 ENEN-----TYYADIIAERGNWLRIEIDKKNNIWMKVKKVPKVPALMFLQALGVTKSNLI 181 Query: 337 FTNDLDHGPYISETLRVDPTNDRLSALV--EIYRMMR--PGEPPTREAAESLFENLFFSE 392 P ++ + + AL E+Y + + + + F + Sbjct: 182 KLLK---YPIPNQNHNLGNFKSQKEALEKIELYSQLESSINSRNLKNQNKITIFDRFMNP 238 Query: 393 DRYDLSAVGRMKFNRSLL-REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR 451 YDL GR++ N+ EE L+ D I + L+ I+ E DDID+L N+ Sbjct: 239 KYYDLGTRGRIQINKKFNNIEETIQHSTLTSKDFILAVHFLLKIKYKIEETDDIDNLKNK 298 Query: 452 RIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL 511 R++ GE+ ++QF +G++R+++ VK++L + L ++ ++ PI+ + EFFG + L Sbjct: 299 RVKIAGELIQSQFGIGILRLQKYVKDKLG-NIKNNLHLTNIFSSTPINTTLAEFFGVNPL 357 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 SQFMD+ NPL+ +THKRR+S+LG GG+ R+ A +R +HPT YGR+CPIETPEG N GL Sbjct: 358 SQFMDEVNPLATLTHKRRLSSLGIGGVNRDTATLTIRSIHPTLYGRICPIETPEGKNAGL 417 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHF 629 +NS +++A+ N G +ETP+ +V +G + E I+YLSA +E I + G Sbjct: 418 VNSFALFAEINSEGLIETPFFRVCNGRILYEMGINYLSANQEDKSNIVPFDIKKSRIGFL 477 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 ++ + R K + S+ +VD++ +S Q++SV SLIPF+EH+DANR LMG+NMQRQA Sbjct: 478 SKNKIAARIKQQFKEVSKKKVDFISISQLQMLSVATSLIPFMEHNDANRVLMGSNMQRQA 537 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 VP L+ + LVGTG+E + D + G + Y+ +I I +E Sbjct: 538 VPLLKTECCLVGTGLETKIFFDLQDNVKSPPNGFISYLSLKKITISNIRNE--------- 588 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 + + + T ++ Sbjct: 589 -HKSFNFKSNPLETITCIKSKSRNFNRLK------------------------------- 616 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YN +D + S+ ++ I R+ K+ + N G ++++L + Sbjct: 617 YNLKDLLTNSKESLK--------ITNYMSYVREQKIQYYIKQYNSSNQGTCSVNRLTLN- 667 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 G + + L+ ++ +L + L K + +D+ + ++ Sbjct: 668 ---EGQFIIKKNPLISGLSS-CRNELALGKNLFVGYISWKGYNFEDAIVLNEQ-----LV 718 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVE 985 ++T +EK + ++ + + +D+ + L+ +I + + + + Sbjct: 719 INNIYTSTHLEKFETEIKKNKENSEIITRDIKNISFLNKKNLDKNGIIKIGSRVFSDDIL 778 Query: 986 AEKLDKL------PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 KL + P + L L + + L + + KI + Sbjct: 779 VGKLLPIETRILSPYRKLLYEILQKQNDHYRNTSLRVPKYKRGRITFVDYIKDKGKIKKK 838 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 ++ LK +K++L R IQ GDK++GRHGNKGVISKI I++MPY +G P+DI+LN Sbjct: 839 TEILKD-LKTIKIHLMQNRLIQIGDKISGRHGNKGVISKILKIQEMPYLNDGIPLDILLN 897 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 PLGVPSRMNIGQ+LE LG++ + + + + G +V + Sbjct: 898 PLGVPSRMNIGQVLECLLGLSCFYLQRRFKVIPFDES--------------FGFEVSRNF 943 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 S + L G+ R++D +G Sbjct: 944 IYSNLYFSNIKTGNN-------------------------WLLHPYYPGKNRIFDSYSGL 978 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 F++P+T+G Y+LKL HLV++K+HARSTGSYSLVTQQPL GK++ GGQR GEMEVWALE Sbjct: 979 PFDQPITIGKAYILKLIHLVEEKVHARSTGSYSLVTQQPLKGKSKKGGQRVGEMEVWALE 1038 Query: 1280 AYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 YGAAYTL E+LTVKSDD+ R K+ +I++ + G E+F VL++E++SL +NI+ Sbjct: 1039 GYGAAYTLHEILTVKSDDIKSRQKVLTSILNSETI-KFGTTETFKVLIRELQSLCLNIQF 1097 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 28/351 (7%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 L P LL +Q SF F++ YG++ + + I + ++L P Sbjct: 4 TPLFFPNLLKLQRKSFLTFLK------YGIKKEIKKLD-ITKNKKKLLVYPNLFQLNLPT 56 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 + EC I TY+ L + +RL+ Y+ E + + + IP+MT+ F+ N Sbjct: 57 YTCNECVITSKTYNCELVIPIRLISYKDEI----------EWITLTNIPIMTNKCNFITN 106 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 G+ RVI+SQ+ R+PG+++ H + Y A II RG+WL E D K+N+++++ Sbjct: 107 GSPRVIMSQITRAPGIYY-------HKENENTYYADIIAERGNWLRIEIDKKNNIWMKVK 159 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG 259 + K+PA + L+AL T ++ L + I + + + Sbjct: 160 KVPKVPALMFLQALGVTKSNLIKLL----KYPIPNQNHNLGNFKSQKEALEKIELYSQLE 215 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 + + + + K ++ + I+E+ + + Sbjct: 216 SSINSRNLKNQNKITIFDRFMNPKYYDLGTRGRIQINKKFNNIEETIQHSTLTSKDFILA 275 Query: 320 DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 + + + + E ++ L + + Sbjct: 276 VHFLLKIKYKIEETDDIDNLKNKRVKIAGELIQSQFGIGILRLQKYVKDKL 326 >UniRef50_A0T0D7 DNA-directed RNA polymerase subunit beta n=82 Tax=cellular organisms RepID=RPOB_PHATR Length = 1389 Score = 666 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 334/1336 (25%), Positives = 545/1336 (40%), Gaps = 205/1336 (15%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF 80 + YL Q +S F++ L + +S +L +L F Sbjct: 198 YYSIKYLKQKQQNSTFYFLQSF-----KLYRVASKLLSSKSKQRVIQLFLKWLKLKNKSF 252 Query: 81 DVQECQIRGVTYSAPLRVKL--RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVI 138 E Q Y L L+ YE T K +++ + + + ++ Sbjct: 253 ---EFQDEKQIYLIKYFNFLLTSLMKYEILQSSLTTKFNEDKTILLSKF----TKSNAIL 305 Query: 139 NGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY--NARIIPYRGSWLDFEFDPKDNLFV 196 N +++ I++ + +S L+ + +F F K Sbjct: 306 NLSDKQIINLSMIYNKLIINSQTLAQMELNSNLFLITKEPREWLTEMSNFLFLKKQISKA 365 Query: 197 RIDRRRKLPATIILR-----ALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETA 251 + T + + + ++ L F K + ++ + + Sbjct: 366 TFTLKSFQELTQLQNLKPAIYFSISLKEQLKYVFGKNKLTYKSDRHKYLKTKTQFLLYRK 425 Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 +I+ N ++ TA I + + + + K + E+I Sbjct: 426 DHEIKTNYNKKYDEKDLYTATVIPEYGSWIRIGFQRNTKINSYKYP----LKSQEDEVII 481 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + +L L + G +E + Y ++ L ++ L E Sbjct: 482 QLDKINQKPVLYLLKEMGLTDLEIYQNLEYADFFYFNKPLLINS-----KRLSEPLSRFN 536 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 G + +E + F Y L VGR+K N L + E ++ +DI + K Sbjct: 537 LGLSYFKNISE---FSRIFDPTYYRLGRVGRLKINSRLNLKMSERLQTITYEDIFAITDK 593 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD 491 LI++ K DDIDHL NRR+RSVGE+ +N FR+G R+ R ++ + + D L+ + Sbjct: 594 LINLTISKTVQDDIDHLKNRRVRSVGELLQNLFRIGFQRLGRKLRNQTNKIDSGQLLSFN 653 Query: 492 MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVH 551 ++NA ++EFFGSSQLSQ++DQ NPLS +TH+RR+S LGPGG R+R F VRD+H Sbjct: 654 IVNAS-----IREFFGSSQLSQYLDQTNPLSSLTHRRRVSGLGPGGFDRDRISFAVRDIH 708 Query: 552 PTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE 611 P+HYGR+CPIETPEG N+GLI SL+ A+ N+ GFLETP+ +V +G V Sbjct: 709 PSHYGRICPIETPEGQNVGLIASLTTCARVNKSGFLETPFWRVINGKVV----------- 757 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 G+ + D D+ ++ + + + Sbjct: 758 --------------------------KTGQPVYLTADIEDFYKIAPADIATNKDNY---- 787 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 + + +P + T E S + V+ ++ + + Sbjct: 788 -------------LTKNVIPVRYKQDFVNVTPSEVDFIAISTIQVVSVAASLIPFFEHDD 834 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 + M + Q P V G + +A L Sbjct: 835 ANRALMGSNMQRQSVP---------------LLLPQKPIVGTGLE----NQIAIDSGMTL 875 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 + G +++ ++ K G Sbjct: 876 NSYSNG-----------------------------VVSSVTANKIVVN---DKTGKRLTY 903 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 + + ++ IV+ G +V G IL ++L+ + +L + Sbjct: 904 KLQKYLRSNQQTCINHRPIVWKGEQVKSGQIL-TDGPAITSSELSLGQNVLIGYMPWQGY 962 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE--------- 962 + +D+ L ++ ++ VFT +E+ K ++ L++ K++ Sbjct: 963 NFEDAIL-----INERLVYDDVFTSIHIERYKIEIDRNSDTLERTTKNIPNLNPREIRHL 1017 Query: 963 -ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL 1021 + I+ G F R +LV + ++LP + L + K + E Sbjct: 1018 NDDGIVTVGTFVRPGDILVGKVISNNTSEQLPESKLLRAIFGAKAKGVKDNSYRMSDGEY 1077 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 E +R K+T + + V++A R+IQ GDK+AGRHGNKG+IS+I Sbjct: 1078 GRVIETVTFNRRTKLTY-------KFEKIYVFIAQIRKIQVGDKIAGRHGNKGIISRILS 1130 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 +DMP+ +GTP+DI+LNPLGVPSRMN+GQ+ E LG+A + + + + ++ Sbjct: 1131 RQDMPFLPDGTPLDILLNPLGVPSRMNVGQLYECLLGLAGDKLNARFKILPFDEMYGLEI 1190 Query: 1142 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 + A + + L Sbjct: 1191 SRILINKKLRQASIAKNES---------------------------------------WL 1211 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 + G++ L DGRTG++FE PVTVG YMLKL HLVDDKMHAR+TG YSL+TQQPL G Sbjct: 1212 FNPYAPGKMVLIDGRTGKEFENPVTVGNAYMLKLIHLVDDKMHARATGPYSLITQQPLRG 1271 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE 1321 KAQ GGQRFGEMEVWALE +GAA+TL+E+LT+KSDD+ GR + IV G + G+PE Sbjct: 1272 KAQHGGQRFGEMEVWALEGFGAAFTLKELLTIKSDDMQGRNETLNAIVKGQQIPKFGIPE 1331 Query: 1322 SFNVLLKEIRSLGINI 1337 SF VLL E+RS+G+++ Sbjct: 1332 SFKVLLHELRSIGLDM 1347 >UniRef50_C8VU19 DNA-directed RNA polymerase n=21 Tax=Eukaryota RepID=C8VU19_EMENI Length = 1225 Score = 666 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 186/1268 (14%), Positives = 374/1268 (29%), Gaps = 233/1268 (18%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF------DPKDNLFV 196 + +V Q S + K S + + + + D D ++ Sbjct: 114 KGLVKQHIDSYNYLVEVQLKKIVESSNTIRSDVDHNFYIKFTDIYLGFPRRADEPQDVRT 173 Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR--------- 247 + P LR Y +D + + +R + + +P LR Sbjct: 174 EFEESTVTPHECRLRDTTYAAPIQVDFEYIRGRQRVRRKGVSIGRMPVMLRSSKCVLGNK 233 Query: 248 -------------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 F + KV + + + R I + + + Sbjct: 234 TPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNE 293 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN-------DLDHGPYI 347 + I + + + + ++ L G + + + Sbjct: 294 RKSKSYIILKKDRLYVKHNVLSEDIPIVILLKAMGIHTDKEMMLLVAGVDKVYQEDFAIN 353 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 E + AL I ++ + AV + Sbjct: 354 FEEAIKVGVFTQQQALDWIGSRIKINR------------KQMSYRRTHVQEAVEAIASVI 401 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 E + + + ++ ++++ +N VDD D+LGN+R+ G++ F Sbjct: 402 ISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLLALLFEDL 461 Query: 468 LVRVERAVKERL-----SLGDLDTLMPQDMI--NAKPISAAVKEFFGSSQLS---QFMDQ 517 + +K + ++ +I ++ I+ + + S M++ Sbjct: 462 FKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQGMNRAISTGNWSLKRFRMER 521 Query: 518 NNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 ++ I+ALG + R R + P+ +G +C +TPEG GL+ Sbjct: 522 AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMICLADTPEGEACGLV 581 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE---GNYVIAQANSNL---DEE 626 +L++ E P + + + ++I + E G+Y I+ + + Sbjct: 582 KNLALMTHITTN-DEEGPIKNLIFMLGAEDIQTVGGKEIYAPGSYTISINGTPMALTRRP 640 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 +F+ R G S F +++ + V + + L + ++ + + Sbjct: 641 KYFLNAFRRLRRMGRISEFVSIYINHHQRA-VHVATDDGRICRPLIIVEDGKSRVKKHHL 699 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 R+ + G+ V V+ + +I + E ++ Sbjct: 700 RKLRDGTMQFDDFLAQGLVEYVDVNEE----------------NDSLIAIYEKDITD--- 740 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 + P T LG +P Sbjct: 741 --------------------------------TTTHMEIEPFTILG-------AVAGLIP 761 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 + +N + ++ R + + P V + Sbjct: 762 YPHHNQSPRNTYQCAMGKQAIG----AIASNQFLRIDSILYLMVYPQKPMVKSRTIELTK 817 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 + + A+ D++D+ + V Sbjct: 818 YDQLPA-------------------------GQNATVAVMSYSGYDIEDALVLNKGSVDR 852 Query: 927 TVIDVQVFTRD--GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 QVF + ++ + + +LE+ + + + AG V Sbjct: 853 GFGRCQVFRKYVTNMKSYSNGTKDILSPPTYENDAPIRKHALLESDGLAAVGEQVNAGEV 912 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 K D+ + G+ + + + K ++ Sbjct: 913 YINKSTP---DQSMSSGMPGSDAGRPISY--NPTPMTYKLPDPAYIDKVMISATENE--- 964 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 +I+KV RR + GDK + RHG KGV I DMP+ + G DI++NP G P Sbjct: 965 --NQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFP 1022 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 SRM +G++LE G A G V ++ + + Sbjct: 1023 SRMTVGKMLELVAGKAGVLSGQHGYGTCFSGTPVEQMTQTLIDKGFSYGGKDYLT----- 1077 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 G+ F Sbjct: 1078 -------------SGITGEALPF------------------------------------Y 1088 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 V G +Y KL H+V DKMH+R+ G + +T+QP G+++ GG R GEME L AYG + Sbjct: 1089 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1148 Query: 1285 YTLQEMLTVKSD----DVNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 L E L + SD DV + + ++ +P + +L++E+ S+ Sbjct: 1149 QLLLERLMISSDRHEVDVCEQCGFMGYLNWCQRCKSSRSVVKMVIPYAAKLLIQELMSMN 1208 Query: 1335 INIELEDE 1342 + L+ E Sbjct: 1209 VTARLKLE 1216 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 133/1034 (12%), Positives = 282/1034 (27%), Gaps = 172/1034 (16%) Query: 5 YTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI-QSYS 63 + + P L V L+ +DS+ +E L+ S I Sbjct: 94 TDPISTAKDKWNLLPAFLKVKGLVKQHIDSYNYLVE------VQLKKIVESSNTIRSDVD 147 Query: 64 GNSELQYVSYRLGEPV----------------FDVQECQIRGVTYSAPLRVKLRLVIYER 107 N +++ LG P EC++R TY+AP++V + Sbjct: 148 HNFYIKFTDIYLGFPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFEYI---- 203 Query: 108 EAPEGTVKDIKEQEVYMGEIPLM------------------------TDNGTFVINGTER 143 + ++ + V +G +P+M G F++NGTE+ Sbjct: 204 ----RGRQRVRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEK 259 Query: 144 VIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RR 202 VI+ Q S K + ++ + KD L+V+ + Sbjct: 260 VILVQEQLSKNRIIVETDPKKEIVQASVTSS---SNERKSKSYIILKKDRLYVKHNVLSE 316 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 +P I+L+A+ T++ + + + ++ + G + + Sbjct: 317 DIPIVILLKAMGIHTDKEM-MLLVAGVDKVYQEDFAINFEEAIKVG----VFTQQQALDW 371 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 + +I + + + +E I + KD + +L Sbjct: 372 IGSRIKINRKQMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMAR----RVL 427 Query: 323 AKLSQSGHKRIETL-----FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 + + + E L + I +++ Sbjct: 428 MAKNDAALVDDRDYLGNKRLELAGQLLALLFEDLFKKFCF---DIKMNIDKVLNKRNRVE 484 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL-IDIR 436 A S+ + + + + + + V+ +L Sbjct: 485 AFDAWSVIGMHS--------NHITQGMNRAISTGNWSLKRFRMERAGVTHVLSRLSYIAA 536 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRV------------GLVRVERAVKERLSLGDL 484 G R++ + +QF + GLV+ + ++ D Sbjct: 537 LGMMTRISSQFEKTRKVSGPRALQPSQFGMICLADTPEGEACGLVKNLALM-THITTNDE 595 Query: 485 D---TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLS-------EITHKRRISALG 534 + + + + KE + + ++ P++ + RR+ +G Sbjct: 596 EGPIKNLIFMLGAEDIQTVGGKEIYAPGSYTISINGT-PMALTRRPKYFLNAFRRLRRMG 654 Query: 535 P-GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 R VH + T +G P Sbjct: 655 RISEFVSIYINHHQRAVH---------VATDDGRIC-------------------RPLII 686 Query: 594 VTDGVVTDEIHYLSAIEEGNY----VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQ 649 V DG + H+L + +G +AQ + + L+ D Sbjct: 687 VEDGKSRVKKHHLRKLRDGTMQFDDFLAQGLVEYVDVNEENDSLIAI-----YEKDITDT 741 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA 709 +M++ ++ A LIP+ H+ + R M +QA+ + +++ L Sbjct: 742 TTHMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRID------- 794 Query: 710 VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 V + I + + A + + + + Y + Sbjct: 795 ----SILYLMVYPQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSV 850 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 G + + S + G ++ + D+ + +++ D Sbjct: 851 DRGFGRCQVFRKYVTNMKS-----YSNGTKDILSPPTYEN----DAPIRKHALLESDGLA 901 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 + Q A K P++ G A + + + KV Sbjct: 902 AVGEQVNAGEVYINKSTPDQS-MSSGMPGSDAGRPISYNPTP--MTYKLPDPAYIDKVMI 958 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID--VQVFTRDGVEKDKRALE 947 K+L K SS GV+G ++D FT G+ D Sbjct: 959 SATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNP 1018 Query: 948 IEEMQLKQAKKDLS 961 K L Sbjct: 1019 HGFPSRMTVGKMLE 1032 >UniRef50_C7BEV5 DNA-directed RNA polymerase n=1 Tax=Parachlorella kessleri RepID=C7BEV5_CHLKE Length = 1312 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 338/1333 (25%), Positives = 522/1333 (39%), Gaps = 189/1333 (14%) Query: 135 TFVINGTERVIVSQLHRSPGVF--------FDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 F N +I + F F S K K + + I W+ F Sbjct: 22 RFYYNDLYVLIPDLIDIQRNSFQNFLQCGLFRSLKKKKSFIFRKSIHKLEIVLFPEWIQF 81 Query: 187 ---EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 E D K L + ++++ + ++ + + +P Sbjct: 82 KKPELDSKKALHFGKTYGSYIYIPVLVKFSGWKKNKL--------------EWILLGFLP 127 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 L + F I +V + + R +I D K + + + + Sbjct: 128 --LLTKQGHFIINGIPRVVLHQMIRNPGIYI---LSKDSKTRVATIRIVPEQGSWINITI 182 Query: 304 ESTGELICA-ANMELSLDLLAKLSQSGHKRIETLFTND------------------LDHG 344 + + + + +L L G E + Sbjct: 183 DKKYRIWITTRFLRKKISVLIFLQALGFSLSEIYKNLGYSELLQVSFVKELQPDEKTRND 242 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRPGEPPTRE------AAESLFENLFFSEDRYDLS 398 + + A +Y TRE A+ F ++ ++ Sbjct: 243 RILIRANLWRHPVTQKQAQRYLYAHYLEYSSQTREQVVTDQTAQEFFLKNVWNYKNRNIG 302 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 +GR +F L L+ DDI K + + + DDID+L N+R+R GE Sbjct: 303 YLGRKQFREKLGSTLSITETWLTADDISLATKASLKLLCNEQVADDIDNLDNKRVRGCGE 362 Query: 459 MAENQFRVGLVRVERAVKERLSL-----------GDLDTLMPQD-MINAKPISAAVKEFF 506 ++ GL E + + S + T + + +K IS + K FF Sbjct: 363 FLYDELNSGLQEFEHVLNRKFSNISISSKNSIFGNECATFWRFNRSLLSKYISKSWKNFF 422 Query: 507 GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG 566 LSQFMD+ NPL+E THKRR++ LGPGG++ ++ ++R +HPT+YGR+CPIETPEG Sbjct: 423 TGGTLSQFMDETNPLAETTHKRRLTVLGPGGVSGKQTTIQIRGIHPTYYGRLCPIETPEG 482 Query: 567 PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI--HYLSAIEEGNYVIAQANSNLD 624 N GL+NS +VY Q N G LETP+ +V G + E+ HYLS E V+A A+ L Sbjct: 483 QNAGLVNSFTVYTQRNSQGILETPFFEVYKGQIQKELKAHYLSPQTESYLVLAPADICLS 542 Query: 625 EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 + + R + +Q+ + Q++SV SLIPFLEHDDANRALMG+N Sbjct: 543 PWNQLPKTDLPVRKNWKFEYTIWNQISKQSIGLLQMISVATSLIPFLEHDDANRALMGSN 602 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPG 744 MQRQAVP LR + LV TG+E V D + + G + V +++I + + Sbjct: 603 MQRQAVPLLRPENALVSTGLETRVISDVNHGIRSSKTGYITAVSSTKIQ--LYKGNYVKD 660 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 + + +K N + + F Sbjct: 661 KQNGNTNKNSKIRSFFNNASVFNKFSLLKKYKAVNQKQKQQKKFFTHLTFFSKTQTFNYF 720 Query: 805 MPWNGYNFEDS-ILVSERVVQEDRFTTIH-----IQELACVSRDTKLGPEEITADIPNVG 858 + ++ + + DS + IH + + K ++ Sbjct: 721 LHYHNHKYFDSKKIYQVTGFHFPVVIPIHLLFSFYVLFYSILENYKNEKQQELELEFLFL 780 Query: 859 EAALSKLD-------ESGIVYIGAEVTGGDILVG-------KVTPKGETQLTP------- 897 D ++ + +I++ K + K E + Sbjct: 781 FQKFYFWDQQSFWKNKNWNLKKQENKNLKNIILSLSQTKKQKSSIKKEYSYSLDNYQRTN 840 Query: 898 ------------------------------------EEKLLRAIFGEKASDVKDSSLRVP 921 + +L A + + +D+ L Sbjct: 841 QSTCITQRPNLKEGDWVQITDIIADGSASAGGKLALGKNVLIAYVPWEGYNFEDAILISD 900 Query: 922 NGVSGTVIDVQVFTRDGVEKDK-----RALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + V VE + + A +LQ L + I Sbjct: 901 KLLEKDVFTSLHIDYYEVEVKNTQYGLETITNKVPLEIDASSKDILQLQRLNSNGLIEIG 960 Query: 977 AVLVAGGVEAEKLDKLP---------RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 + + G K+ L ++ + + + L + Sbjct: 961 SWVEEGDYLVGKISPLSPKGPSIYKQYEKLYNVIWQRDNPTFKNTSLRVPKGVEGFVLDV 1020 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 ++ + + V++ L KR IQ GDKMAGRHGNKG+ISKI P +DMPY Sbjct: 1021 QILPPKETDVLPL-APKNAILRVRIALLQKRNIQVGDKMAGRHGNKGIISKILPCQDMPY 1079 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 +G P+DIVLNPLGVPSRMN+GQILE+ LG A K + + L + Sbjct: 1080 LPDGNPIDIVLNPLGVPSRMNVGQILESLLGFAGKYLHESYKIELFDE------------ 1127 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 GA+ + + S + + L + Sbjct: 1128 --KFGAEASRSLVYSKLYEASLKTANP-------------------------WLFEPQHP 1160 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G+I+L+DGRTGE F++PVTVGY YMLKL HLVDDK+HAR+TG YS VTQQP+ G+A+ GG Sbjct: 1161 GKIKLFDGRTGESFDQPVTVGYAYMLKLIHLVDDKIHARATGPYSAVTQQPVRGRARNGG 1220 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLL 1327 QR GEMEVWAL+AYGAAYTLQE+LT+KSDD++GR + I + G PESF VLL Sbjct: 1221 QRLGEMEVWALQAYGAAYTLQELLTIKSDDIDGRKEAVFRIYTNRSL-KFGQPESFKVLL 1279 Query: 1328 KEIRSLGINIELE 1340 +E++SL N+++ Sbjct: 1280 RELQSLCFNLQIY 1292 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 69/389 (17%), Positives = 143/389 (36%), Gaps = 24/389 (6%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 + + R+ + + +P L+ IQ +SFQ F++ + +F +F + Sbjct: 16 KDQFNRRFYY-NDLYVLIPDLIDIQRNSFQNFLQCGLFRSLKKKKSF--IFRKSIHKLEI 72 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 L + +P D ++ G TY + + + + + K K + + +G Sbjct: 73 VLFPEWIQFKKPELDSKKALHFGKTYGSYIYIPVLVKF-------SGWKKNKLEWILLGF 125 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 +PL+T G F+ING RV++ Q+ R+PG++ S KT + RI+P +GSW++ Sbjct: 126 LPLLTKQGHFIINGIPRVVLHQMIRNPGIYILSKDSKT-----RVATIRIVPEQGSWINI 180 Query: 187 EFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 D K +++ R+K+ I L+AL ++ +I + ++ EL P+ Sbjct: 181 TIDKKYRIWITTRFLRKKISVLIFLQALGFSLSEIYKNLGYSELLQV---SFVKELQPDE 237 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 + V + + + LE +V + A + K+ + Sbjct: 238 KTRNDRILIRANLWRHPVTQKQAQRYLYAHYLEYSSQTREQVVTDQTAQEFFLKNVWNYK 297 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 + + L + L + + L + D + L Sbjct: 298 NRNIGYLGRKQFREKLGSTL---SITETWLTADDISLATKASLKLLCNEQVADDIDNLDN 354 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDR 394 + +R + S + +R Sbjct: 355 --KRVRGCGEFLYDELNSGLQEFEHVLNR 381 >UniRef50_Q05FH8 DNA-directed RNA polymerase subunit beta n=2 Tax=Candidatus Carsonella ruddii RepID=RPOB_CARRP Length = 1267 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 400/1342 (29%), Positives = 689/1342 (51%), Gaps = 90/1342 (6%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY 62 + +++KK K ++PYLL Q+ S+ F+ + ++ + FP+ Sbjct: 10 FCFSKKKFFHK--------CNLPYLLHNQIGSYNSFLSSKYNSLFSIKKVLKQYFPLICN 61 Query: 63 SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 + N ++ L EP + +IR + + L + + + + + +++ Sbjct: 62 NKNIFIKLKKIELLEPCNTEKYTKIRNLHLFSTLYMYISIYVINKNLN-------VYKKI 114 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 ++G IP MT G F+ING +R+++SQ +S G++F ++K K IIP +GS Sbjct: 115 FLGNIPSMTKKGNFIINGIDRILISQFTKSYGIYFYTEKKKKK--------CIIIPLKGS 166 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 WL+F + D++ + L L Y + + FF K+ +I K ++ Sbjct: 167 WLEFIITNNFLIV--FDKKINFEINVFLICLGYNKKYFFNFFFFKIKIKIIRGKKRIFF- 223 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI 302 L + F K K I + ++ I GK+ K+Y Sbjct: 224 ---LLNKKKYF------------------------YKIYNKYICISIKKILGKLFGKNYF 256 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + L + ++ + + +F + + Y+ + Sbjct: 257 LKKNTFL---KFNIIDINKVNLILNYPIYFFFIIFLKKIINLNYLIYIYKNFKLKINKEL 313 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 L ++ F F + +Y S +G + + L + Sbjct: 314 LQY------------KKGYIINFFRNLFYKKKYFYSLIGAKRIFKRLFLK-----KNNKL 356 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 ++++KK++ + D+ D+L N+ I + G++ +F +V + + +++ Sbjct: 357 TIYLEIIKKILKFIKFNIQNDNFDNLENKLILNCGKLLSIKFDFLFKKVIKFINYKMNNF 416 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 ++N+ I+ +K++F +++LSQF+DQNNPL+EI+H R+IS + G+ +E Sbjct: 417 K-KYKDLDFIVNSDIITIGLKDYFCNNELSQFLDQNNPLAEISHNRKISLISGIGIEKEN 475 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 GF++RD+H +HY +VCPI+TPEG NIGLINSL+ ++ N+Y F+ T Y+ G + Sbjct: 476 CGFDIRDIHYSHYCKVCPIDTPEGHNIGLINSLAYLSKVNKYNFISTIYKISILGKILGI 535 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGH-FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVV 661 + ++ +++ ++ G F R +D +++ Q++ Sbjct: 536 TFLDNKFDKHKFIVNFNSTIETIYGEIFRSPYFEARKTNYYYYKKFLNIDLIEICGDQII 595 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 SVGASLIPFL H+DANR LMG+NMQRQAVP + ++ P+VGTG E + ++S ++ Sbjct: 596 SVGASLIPFLSHNDANRCLMGSNMQRQAVPLIDSENPIVGTGNELEIGLNSNYNILSDLN 655 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 G V Y D +I+IK N I Y L KYTR+NQNT +NQ V G+ V+ G+ Sbjct: 656 GYVLYSDNYKIIIKNNNF--------IKTYFLEKYTRTNQNTILNQYTKVLKGDFVKVGN 707 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 ++AD ST GE++LG+N+RVAFM W GYNFEDSIL+S ++ ++ F +IHI E V + Sbjct: 708 IIADSNSTKNGEISLGKNLRVAFMSWYGYNFEDSILLSSSILNKNNFNSIHIYEFITVLK 767 Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 + G E ++ + E +K+ ++GI+ IG V D++VGK+ PK + + +PEEKL Sbjct: 768 YNENGFEIVSNECFGSNEKIKNKV-KNGIIKIGEFVFSKDVIVGKMIPKKKRKFSPEEKL 826 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS 961 + +F E + + L VP + GT+I V F K+K ++ QL K+++ Sbjct: 827 FKIVFSESNFNYYEQPLTVPKNIKGTIIAVNDFKIF-YFKNKIFKLLKFEQLNYTCKNIN 885 Query: 962 EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT----DEEKQNQLEQLAEQ 1017 ++I+ +L + +K + + +++ +L Sbjct: 886 NFFYETFNYYLTKIKKLLFNNKITIKKKRINSYNININNIFKIKCFNKKINFKLNIFKNI 945 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + + K+ + DD +++I+K+ +AVK++I GDKM+GRHGNKGV+S Sbjct: 946 ISNELLKKKNIFVYKKINFIKHDDFENSIIRIIKIKIAVKKQIAIGDKMSGRHGNKGVVS 1005 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 I E+MPYD+ G +D++LNPLGVPSRMN+GQ+LE L + + +K + Sbjct: 1006 NIIDYENMPYDKFGNKIDLILNPLGVPSRMNVGQLLEVFLA-GSLNLIKSFFLKIKNLNK 1064 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 ++ + + + ++L+ F++ V+++ +N++ + + F ++ Sbjct: 1065 ISYFKMKLFIKIIFKCIYDKNINLNIFNNSLVLKIFKNIKNQLNVCVHNFYNFNVNKVNN 1124 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 ++K + + ++ L+DG TG+++ + V VGY+Y +KLNHLV DK+++RS G YS+VTQQ Sbjct: 1125 IIKTIGINKNCELLLFDGITGKRYLQLVNVGYIYFMKLNHLVIDKIYSRSIGPYSIVTQQ 1184 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PLGGK+ GGQR GEMEVWALEAYGAA+ L+EMLT+KSDD+ GR ++YKNI+ G + Sbjct: 1185 PLGGKSNLGGQRLGEMEVWALEAYGAAFLLKEMLTIKSDDILGRIELYKNIIKGINDANS 1244 Query: 1318 GMPESFNVLLKEIRSLGINIEL 1339 G+PESF VL+KEI+SL +I++ Sbjct: 1245 GIPESFQVLMKEIQSLCFDIKI 1266 >UniRef50_A8WJV6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae AF16 RepID=A8WJV6_CAEBR Length = 1160 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 189/1282 (14%), Positives = 366/1282 (28%), Gaps = 248/1282 (19%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F + + S + + + + ++LD Sbjct: 39 RGLVKQHLVSFDHFVNVEIRNIMLSNQKITSDANPNFHLTYLDIRVGK------------ 86 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR--------------- 247 P+ LR + Y+ +D+ + + + L + +P LR Sbjct: 87 --PSKCRLRDMTYSAPISVDIEYTRGHQRVYKKDLVIGRMPIMLRSSKCILRDLAEEELA 144 Query: 248 -------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 F ++ + KV + + + R + +L + + + Sbjct: 145 RVQECPHDPGGYFVVKGSEKVILIQEQLSKNRIMVG-RNSSKELQCEVLSSTSERKSKTY 203 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRVD 354 + + + + + G + + + Y+ E Sbjct: 204 VTVKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSAFAQTLEECINA 263 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 + AL + ++ + + ++ + AV + + Sbjct: 264 GVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTAPKE--HEAVDFLSNSMITHIACP 321 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 +G+ + + + ++LI G+ E+DD D GN+R+ G + F R Sbjct: 322 DGNFKMKAIYLGQMTRRLIQTEMGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSE 381 Query: 475 VKERLSLGDLDTL----MPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEITHK 527 +K + T+ + I+ + + M++ ++ Sbjct: 382 LKRIADNALMKTMAAPLDIVKHMRQDMITNTIVNAMSTGNWIIKRFRMERLGVTQVLSRL 441 Query: 528 RRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ISALG + R R + P+ +G +CP +TPEG GL+ +L++ + Sbjct: 442 SYISALGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHIT 501 Query: 583 EYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNLD----EEGHFVEDLVTC 636 E P ++ +++H + S + + + N L + V+ + Sbjct: 502 TD-SDEKPVLRLLLNSGVEDLHNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDL 560 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R G S F + S + S G L + ++ ++ R Sbjct: 561 RRSGLLSEFVSVSRSMTNRSVF-ISSDGGRLCRPYIIVRHGKPMLTETHVQELKEGKRIF 619 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 + V G+V+Y+ + +EM Sbjct: 620 EDFV-------------------DDGIVEYL---------DVNEMNDALIA--------- 642 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 V E L P T LG + +P+ +N Sbjct: 643 --------------VYENEIGAETTHLEIEPFTLLG-------VCAGLIPYPHHNQSPRN 681 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 + ++ T R + P V + + + Sbjct: 682 TYQCAMGKQAMGTI----AYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPA---- 733 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 + A+ D++D+ + + V+ Sbjct: 734 ---------------------GANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKH 772 Query: 937 DGVEKDKRALEIEEM----QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 K + + + + + L+ A ++ K + Sbjct: 773 VKGTAKKYPNQTYDRLLGPAVDSVTLKPIFKHKNLDQEGIVFTGARILPKQTIINKYMPV 832 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKV 1052 + + + + D+ + KV Sbjct: 833 VSAESGSAASANTIGIAGRDVAYKDVSITYKTPTPSYAERVLLTYNEDE-----AHLFKV 887 Query: 1053 YLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI 1112 L RR + GDK + RHG KGV I EDMP+++ G D+++NP G PSRM +G++ Sbjct: 888 LLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKL 947 Query: 1113 LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRL 1172 +E G A G +V + E + T Sbjct: 948 MELLSGKAGVMNGTYHYGTAFGGDQVKDVCEELAARGYNYMGKDMLTSGITGQPLSA--- 1004 Query: 1173 AENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 G +Y Sbjct: 1005 -------------------------------YIYFG--------------------PIYY 1013 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 KL H+V DKMHAR+ G + +T+QP G+++ GG R GEME L AYGA+ L E L Sbjct: 1014 QKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLM 1073 Query: 1293 VKSD---------------------------DVN------GRTKMYKNIVDGNHQMEPGM 1319 V SD DV G + + Sbjct: 1074 VSSDEFKVLFRSFVPLIPIEVFFVRRCFQCVDVCTGCGVIGSKGWCQKCRSSKSMANIKI 1133 Query: 1320 PESFNVLLKEIRSLGINIELED 1341 P + +L +E++S+ I L+ Sbjct: 1134 PYACKLLFQELQSMNIVPRLDL 1155 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 84/246 (34%), Gaps = 47/246 (19%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQ 69 ++ + P L V L+ L SF F+ + S I + N L Sbjct: 25 LKDKWLLVPAFLKVRGLVKQHLVSFDHFV------NVEIRNIMLSNQKITSDANPNFHLT 78 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 Y+ R+G+P +C++R +TYSAP+ V + + + ++++ +G +P+ Sbjct: 79 YLDIRVGKPS----KCRLRDMTYSAPISVDIEYT--------RGHQRVYKKDLVIGRMPI 126 Query: 130 M------------------------TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTH 165 M G FV+ G+E+VI+ Q S Sbjct: 127 MLRSSKCILRDLAEEELARVQECPHDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKE 186 Query: 166 SSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLF 224 +VL + R S +P +II +A+ + I+ Sbjct: 187 LQCEVLSS---TSERKSKTYVTVKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIVSTI 243 Query: 225 FEKVIF 230 + + Sbjct: 244 GHEEKY 249 >UniRef50_A2E7H8 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E7H8_TRIVA Length = 1177 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 214/1403 (15%), Positives = 409/1403 (29%), Gaps = 316/1403 (22%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQ 69 + + + L+ QL S+ FI + G+ LQ Sbjct: 17 SQNDMWMVISKFFENRGLVKQQLKSYNSFINNCVDSVL-------------DDKGHITLQ 63 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 + +K+ + + +G I Sbjct: 64 SDQLLANK--------------------IKMDFNSNDDDEDQGKTIHISF---------- 93 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 GT V+ + + Y+ + + Sbjct: 94 ----------GTSTVLRPTTPEGKQLTPM-----ISRLRSLSYSLILRSDIRVVVMDSNK 138 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 L V K+P I + + RD++ + + E Sbjct: 139 NMKQLDVDGVEIAKVPVMIRSEYCHLSNH--------------RDDRAINDNLNECDYDP 184 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI------- 302 F + + KV + + + + I +K VK KV + Sbjct: 185 GGYFIVNGSEKVIIGQEHMVINKPICYAQKSMVKYDLATEIRSQPKVFGRLSQPFNLFLL 244 Query: 303 --DESTGELICAAN---MELSLDLLAKLSQS---GHKRIETLFTNDLDHGPYI---SETL 351 E A E ++ L G K I L D + +I ++ Sbjct: 245 APTAKQPERPIHAKLSKTEKTIPLFILFRALKFKGDKEILDLICYDPEDSEFIDVLRPSI 304 Query: 352 RVDPTNDRLSA-LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + A L + + E + Y L +G Sbjct: 305 EESSSFLDDRACLDFVGKRCSI----AAEEKSQRLRKAQRLLNEYLLPHLGE-------- 352 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 E I + LI++ G+ + DD DH N+R+ G + F + + Sbjct: 353 ---KESDTTSKAFFIGYMAHNLINVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFALLFEK 409 Query: 471 VERAVKERLSL-----------GDLDTLMPQDMINAKPISAAVKEFFGSSQLS------- 512 + +++ + L L Q ++N K I++ ++ G+ S Sbjct: 410 MIKSLTQHLEKRLKDGNIDQMAKSAADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQAGS 469 Query: 513 -----QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 Q +++ LS +++ RR + + R+ R +H TH+G +CP+ETPEG Sbjct: 470 KAGVSQMLNRLTFLSTLSNLRRTNT----PIGRDGKLTGPRHLHNTHWGYICPVETPEGQ 525 Query: 568 NIGLINSLSVYAQTNEYGFLET--PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 + GLI +L++ + LE ++ + T I ++ + + N Sbjct: 526 SCGLIKNLALMSIVTVNRELEAGDAITRILEDTGTIPIQQITPDQIKDSTKIFLNGAWYG 585 Query: 626 EGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 +E L++ R + V ++ + + G + + Sbjct: 586 IHTDAYDLMETLLSERRSLKIPSDVS-FVHHIRDQEIFIWTDGGRITRPVLIV------- 637 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741 + T + + ++ V + G+V+Y+D K+ Sbjct: 638 ---------------NDMHLTLKKSVLYDENTNWKVLRYKGMVEYLDIDEEETKL----- 677 Query: 742 YPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR 801 + +L + S V+ PS G + Sbjct: 678 ----IALSPADLEENRNSPTG--------------VKTYTHCEIHPSLIFG-------VC 712 Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 +P+ +N + ++ ++ R P V Sbjct: 713 GTIIPFPDHNQSPRNTYQCAMGKQAIG--LYTTNYMI--RMDSSSHVLWYPQKPLVATRN 768 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 + L+ + + + AI + +DS + Sbjct: 769 MRYLNFNKLPA-------------------------GINVTVAICCYTGYNQEDSLMLNA 803 Query: 922 NGVSGTVIDVQVF-----TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + + + F T +G + + + K + ++A + Sbjct: 804 SAIDRGLFRSYFFRTYKETAEGDGTEGASEVFTFPDPQTVKGIKLHDSSKIDADGLAIPG 863 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 AV+ A V K+ + + +Q + + E Sbjct: 864 AVVSAQDVIIGKISP-------DSPTELDHRQYKDTSCVVRPMETG-----------VVD 905 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + L++ +V RR + GDK RHG KGV EDMP+ +G DI Sbjct: 906 LVLRTITKKNLQLARVRTRQMRRPEIGDKFCSRHGQKGVCGMTYRQEDMPFTRDGMVPDI 965 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGD---KINAMLKQQQEVAKLREFIQRAYDLGA 1153 ++NP +PSRM IG ++E LG + +A V + + +Q A Sbjct: 966 IMNPHALPSRMTIGHLIECLLGKCTAIDPQNADEGDATPFCGVTVDAIAKRLQDAGFEKY 1025 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + SG+ Sbjct: 1026 GNETLYNG--------------------------------------------RSGK---- 1037 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 + + + G Y +L H+V DK HAR+ G SL+ +QP+ G+A+ GG RFGEM Sbjct: 1038 ------RLKAKIYFGPTYYQRLKHMVGDKAHARALGRKSLILRQPVDGRARNGGLRFGEM 1091 Query: 1274 EVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM-----------YKNIVDGNHQMEPG 1318 E L A+G + +++ L SD V + D + Sbjct: 1092 ERDCLIAHGVSAMMRDRLLENSDRYFVPVCKTCGLIAIEKTDGTMECPACQDEGRLAKVE 1151 Query: 1319 MPESFNVLLKEIRSLGINIELED 1341 MP +F ++++E+ S+ I L Sbjct: 1152 MPYAFKLVIQELMSMCIAPRLNL 1174 >UniRef50_A7BQQ8 DNA-directed RNA polymerase n=3 Tax=Proteobacteria RepID=A7BQQ8_9GAMM Length = 1118 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 479/720 (66%), Positives = 571/720 (79%), Gaps = 18/720 (2%) Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 D T L A +EIYRMMRPGEPPT EAAESLF NLFFSE+RYDLSAVGRMKFNR + R+E Sbjct: 4 DSTTTTLEAQIEIYRMMRPGEPPTPEAAESLFNNLFFSEERYDLSAVGRMKFNRRIGRDE 63 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 I G GIL+ DDI+DV++ LI+I NG G VDDIDHLGNRRIRSVGEM ENQFR+GLVRVER Sbjct: 64 ITGPGILTVDDILDVLRTLINIPNGIGGVDDIDHLGNRRIRSVGEMTENQFRIGLVRVER 123 Query: 474 AVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISAL 533 AVKERLS+ +++ ++PQ++INAKP+SA+++EFFGSSQLSQFMDQNNPLSE+THKRRISAL Sbjct: 124 AVKERLSVAEIENVVPQELINAKPVSASIREFFGSSQLSQFMDQNNPLSEVTHKRRISAL 183 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL+VYA+TN+YGFLETP R+ Sbjct: 184 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNDYGFLETPCRR 243 Query: 594 VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYM 653 V DG VTD++ YLSAIEEG +VIAQAN+NLDE G+F +D+V R + E ++ S+D+V+YM Sbjct: 244 VEDGRVTDKVEYLSAIEEGGFVIAQANANLDENGYFKDDMVAARHENEFTVISKDKVNYM 303 Query: 654 DVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSG 713 DVS +Q+VSV ASLIPFLEHDDANRALMG+NMQRQAVPTLRA KPLVGTGMER VA+DSG Sbjct: 304 DVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAQKPLVGTGMERIVAIDSG 363 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPG--------------EAGIDIYNLTKYTRS 759 VT VA+RGG++ VDA+RIV+++N+DE+ +G+DIYNLTKY RS Sbjct: 364 VTVVAERGGIIDSVDAARIVVRINDDEVLKEGEDNSITPKFGTLLSSGVDIYNLTKYVRS 423 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 NQNTCINQ P V + ++RGDVLADGPSTDLGELALGQN+ VAFMPWNGYNFEDSIL+S Sbjct: 424 NQNTCINQKPLVKPDDLIKRGDVLADGPSTDLGELALGQNLFVAFMPWNGYNFEDSILIS 483 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 ERVV+E+RFT+IHI EL+C++RDTKLG EEITADIPNV E+AL LDE+GI+ IGA+V Sbjct: 484 ERVVEEERFTSIHIVELSCLARDTKLGAEEITADIPNVSESALKNLDEAGIISIGAQVMP 543 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+SLRVP+G GTVIDVQVFTRDGV Sbjct: 544 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGTMGTVIDVQVFTRDGV 603 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 +K RA IE+ +L + KKDL + L+ILE ++ R+ +LV V + + Sbjct: 604 DKGARAGRIEQAELNRVKKDLQDTLRILEHDVYLRVEKLLVGNKVTNSSNGWEGWEGVKK 663 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA-KRRKITQGDDLAPGVLKIVKVYLAVKR 1058 L + ++ E E + + + I + L K K L K+ Sbjct: 664 LLVGNKVTN---SSKDEDGIETNTIITSRSDDIETNTIITSEILGEPSDKWFKFSLEDKK 720 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 234/353 (66%), Positives = 281/353 (79%), Gaps = 4/353 (1%) Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 LPR + EL + DE+ Q Q+E A+Q + + + E KR+K+ GD+LAPGVLK+VK Sbjct: 763 LPRTKLFELRVEDEKIQAQIESFAQQLKDQRQRADALYEEKRQKLISGDELAPGVLKMVK 822 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 VYLA+KR IQPGDKMAGRHGNKGV+S I P+EDMPY ++G PVD+VLNPLGVPSRMNIGQ Sbjct: 823 VYLAIKRTIQPGDKMAGRHGNKGVVSMIVPVEDMPYTKDGRPVDLVLNPLGVPSRMNIGQ 882 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY----DLGADVRQKVDLSTFSDE 1167 +LETHLG AAK +G++I LK + + + I+ + + DL+ ++ Sbjct: 883 VLETHLGWAAKALGEQIEQKLKIINKSKIIAQSIEELRSYLTKIYNVSGKPEDLTVLNNA 942 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 E++ LA+NL G+P+AT VFDGA E+EIK +L+L LPT+GQ LYDGRTGE F R +TV Sbjct: 943 EILELAKNLSDGVPMATQVFDGASESEIKMMLELAGLPTNGQTTLYDGRTGEAFSRQITV 1002 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 GYMYMLKLNHLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+YTL Sbjct: 1003 GYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTL 1062 Query: 1288 QEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 QEMLTVKSDDVNGRT+MYKNIVDG+H+ME GMPESFNVL+KEIRSLGI+IELE Sbjct: 1063 QEMLTVKSDDVNGRTQMYKNIVDGDHRMEAGMPESFNVLVKEIRSLGIDIELE 1115 >UniRef50_B2IM40 DNA-directed RNA polymerase n=382 Tax=cellular organisms RepID=B2IM40_STRPS Length = 824 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 326/935 (34%), Positives = 461/935 (49%), Gaps = 183/935 (19%) Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 ++ DI+ M +++ G G VDDIDHLGNRRIR+VGE+ NQ R+GL R+ER V+ER+ Sbjct: 1 MTPADILAEMSYFLNLAEGLGRVDDIDHLGNRRIRAVGELLANQVRLGLSRMERNVRERM 60 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 S+ D + L PQ +IN +P++AAVKEFFGSSQLSQFMDQ+NPLSE++HKRR+SALGPGGLT Sbjct: 61 SVQDNEVLTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRRLSALGPGGLT 120 Query: 540 RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD--G 597 R+RAG+EVRDVH THYGR+CPIETPEGPNIGLIN+LS Y N+YGF++TPYRKV G Sbjct: 121 RDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGHLNKYGFVQTPYRKVDRETG 180 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VVT+EI +L+A EE Y +AQANS E F+ V M Sbjct: 181 VVTNEIVWLTADEEDEYTVAQANS----------------RLNEDGTFAEKIV--MGRHQ 222 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 A+++ +++ S V Sbjct: 223 GVNQEYPANIVDYMDV--------------------------------------SPKQVV 244 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 A + +++ + M + Q P V G Sbjct: 245 AVATACIPFLENDDSNRALMGANMQRQAVPLIN---------------PQAPYVGTG--- 286 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 E + A + Y+ + Sbjct: 287 --------------MEYQAAHDSGAAVI--AQYD----------------GKVTYADADK 314 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 R G ++ + + ++ +V +G V GD + ++ Sbjct: 315 VEVRRED-GSLDVYHIQKFRRSNSGTAYNQRTLVKVGDVVEKGD-FIADGPSMENGEMAL 372 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 + + A + + +D+ + S ++ V+T +E+ + ++ ++ Sbjct: 373 GQNPIVAYMTWEGYNFEDAVIM-----SERLVKDDVYTSVHLEEYESETRDTKLGPEEIT 427 Query: 958 KDLS----------EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 +++ +E+ I+ G + +LV + D +R L D+ + Sbjct: 428 REIPNVGEDALKDLDEMGIIRIGAEVKEGDILVGKVTPKGEKDLSAEERLLHAIFGDKSR 487 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 + + L + + K+ + GD+L GV +V+VY+A KR+I+ GDKMA Sbjct: 488 EVRDTSLRVPHGADGVVRDVKIFTRV----NGDELQSGVNMLVRVYIAQKRKIKVGDKMA 543 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 GRHGNKGV+S+I P+EDMPY +GTPVDI+LNPLGVPS IG Sbjct: 544 GRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS---------------RMNIGQV 588 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 + E+ G+ IATPVF Sbjct: 589 M---------------------------------------ELHLGMAARTLGIHIATPVF 609 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 DGA ++ +K + + + LYDGRTGE F+ V+VG MYM+KL+H+VDDK+HARS Sbjct: 610 DGASSEDLWSTVKEAGMDSDAKTILYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARS 669 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 G YS VTQQPLGGKAQFGGQRFGEMEVWALEAYGA+ LQE+LT KSDD+NGR K Y+ Sbjct: 670 VGPYSTVTQQPLGGKAQFGGQRFGEMEVWALEAYGASNVLQEILTYKSDDINGRLKAYEA 729 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 I G +PG+PESF VL+KE++SLG+++ + DE Sbjct: 730 ITKGKPIPKPGVPESFRVLVKELQSLGLDMRVLDE 764 >UniRef50_A9CSV4 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CSV4_ENTBH Length = 1138 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 207/1371 (15%), Positives = 408/1371 (29%), Gaps = 288/1371 (21%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQ 69 ++ D L+ QLDSF +F++ ++ I Sbjct: 17 NEENNWAIITSFFDQKGLVRQQLDSFNQFVK------IKMQEIIDENSIISV-------- 62 Query: 70 YVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL 129 + P +E ++Y G+I + Sbjct: 63 -------------------------------------KSIPTAGNSIEREIKLYFGQISI 85 Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 + I+GT I+ R + + K Y I E D Sbjct: 86 LGPPINTEIDGTSSKILPNEARLRDLTY---WVNMFIDVKKAYYENGI---------EVD 133 Query: 190 PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 + V LP + D + + + + + Sbjct: 134 VSKTIRVPF---GSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFIITGGEKVIVAQ 190 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 I N +K + + ++ ++P + V I S + Sbjct: 191 ER---IATNMVHIFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKVVKNLRVIRASINLV 247 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETL-----FTNDLDHGPYISETLRVDP-TNDRLSAL 363 + + +L G + + + ND + Y+ +L D+LSAL Sbjct: 248 ------KQDIPVLIIFRALGFNSDKEILSYIQYDNDKELNEYLLNSLEEASCIQDQLSAL 301 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 I + P + + L +G+ +F Sbjct: 302 DFIGKR----SAPIGSPKSKRIDFAKQILIKEFLPHIGQQEF-----------CETKKAY 346 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL-- 481 + ++ K++ + GK +VDD DH G +R+ G + N F+V ++ + L Sbjct: 347 FLGYMINKILLVITGKRDVDDRDHYGKKRMDLSGPLLANLFKVLFKKLLTETTKYLQKCV 406 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHKR 528 + + + I+ K + +Q + + N LS ++H R Sbjct: 407 ENNREFNLTIGLKSSIITQGFKYALATGNWGHQEKAMSTRAGVAQVLSRYNFLSTLSHLR 466 Query: 529 RISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE 588 R++ + +E R +H TH+G +CPIETPEG GL+ +LS+ A + G Sbjct: 467 RVNT----PIEKEGKLAAPRQLHNTHWGMICPIETPEGHACGLVKNLSLMAYISV-GKSS 521 Query: 589 TPYRKVTDGVVTDEIHYLSAIE-EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 ++ + + + + + I V + V+ L R GE Sbjct: 522 NQIIEILEELGVERLEEIEYIYGTKILVNGAWIGVTSDPVRIVQILKKFRRHGEIDSEIS 581 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 + + + ++ S L + N L+ L+ G Sbjct: 582 I-IFDIKENEIKINSDAGRPCRPLFIVENNELLVNKQDIEDLKNIKIKWDDLIKNGKIEL 640 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 + ++ + Sbjct: 641 LDIEEEEV------------------------------------------------SLIA 652 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 M L + ++ P+ LG + + +P+ +N + ++ Sbjct: 653 MGLNDLKDTNKQYTHCEIHPAIILG-------ITASVIPFPTHNPSPRNTYQSAMGKQAM 705 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 I R L P V ++ + Sbjct: 706 G----IYSTNFFKRMDTLSNILCYPQKPLVSTKSMEYIKF-------------------- 741 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL- 946 +L + + AI + +DS + + + +F ++ + Sbjct: 742 -----KELPSGQNCIVAIACYSGYNQEDSIIMNQASIDRGLFRSFLFRTYSDQEKMKYTG 796 Query: 947 ---EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 +I +++ + IL + V K+ P + Sbjct: 797 VNEKICKIERSVIFRPKKNNYDILGNDGIVCPGTQVYGDDVIIGKM--TPILDVEKSTPG 854 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 + + + E + + + K K KV + R Q G Sbjct: 855 NPFYLFKDTSTLIRKTEQGNIDKVIVTTK------------DGYKFTKVKVRSMRIPQMG 902 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DK A RH KGV+ EDMP+ +G D+++NP +PSRM IG + E LG Sbjct: 903 DKFASRHAQKGVVGITLKQEDMPFTSDGLIPDVIINPHAIPSRMTIGHLFEALLGKLTTL 962 Query: 1124 IGDKINAMLKQQ--QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G + +A Q + ++ + + + + G Sbjct: 963 NGIEGDATPFANKPQTIDEISKELAKYGYQKRGFEIMHSGA---------------TGYK 1007 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 + + +F +G Y +L H+VDD Sbjct: 1008 LKSQIF---------------------------------------IGPTYYQRLKHMVDD 1028 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K+HAR+ G ++T+QP+ G+++ GG RFGEME + ++GA+ L+E L SD Sbjct: 1029 KLHARARGPLQIMTRQPVEGRSREGGLRFGEMERDCIISHGASAFLKERLMDVSDVYT-- 1086 Query: 1302 TKMYKNI----------VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + N + + +P +F +L++E++ + I + ++ + Sbjct: 1087 CGVCDNCGLICNNNCTGCNNSTISNINIPYAFKLLIQELQGMNIFMRIQTQ 1137 >UniRef50_Q4MYU5 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4MYU5_THEPA Length = 1244 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 206/1440 (14%), Positives = 426/1440 (29%), Gaps = 322/1440 (22%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 Y K I+ + P + + + ++S+ F + I + Sbjct: 24 IYEPVKEIKDKWKILPCYMGMRGIARQHINSYNNF-------------VLHEIKDIINAP 70 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 N L+ Y P ++ ++ Sbjct: 71 SNKVLRTDLY----PSLS-----------------------------------LEFVDIK 91 Query: 124 MGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW 183 +G+ P TD+ V + QL R Y+A I+ + Sbjct: 92 IGK-PFFTDHSKHVFK-----LTPQLCRIRDF---------------TYSAPILVTIDYF 130 Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDL-------------------- 223 D+ F K+NL + ++P + +++ + Sbjct: 131 RDYTFTRKENLEI-----GRIPVMLRSCICFLSSDSESNSDHDSSGLPEYNSSKKSMKNN 185 Query: 224 --FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 + + E R++ + ++ E F I+ KV + + + +R I +++ Sbjct: 186 FDIPDGLSKEDRESFYKSYMLDECPYDPGGYFIIKGVEKVILMQEQLSKSRIIVEMDVKK 245 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 V K + +++ + + + L L G + + Sbjct: 246 NICATVTSATAESK-SRTAVVYKNSQLYLRINSFTDDVPLCIVLKAMGIETDHEIIQLIS 304 Query: 342 D----------------------HGPYISETLRVDPTNDRLSALVEIYRMMRPG----EP 375 + L + N RL AL+ I + +RP Sbjct: 305 NSPTTFKNSNNLTTPSSNLPNGLDYITFLNDLYNEDINSRLDALMYIGKKIRPRVLGKGF 364 Query: 376 PTREAAESLFENLFFSEDRYD-LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 + + ED +D LS V R+ LS + ++++ Sbjct: 365 FSSNKDRAPKSKQMILEDTHDILSRVLLSHIPMKDCRDFSGKIKTLS-----LMAHRVLN 419 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL------------- 481 + N +DD DH GN+R+ G+M F + +K+ + Sbjct: 420 VVNNVEPLDDKDHYGNKRLELAGQMISILFEDFYKKFLSNMKKSIESILVKYLEANPNPA 479 Query: 482 --GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEITHKRRISALGP- 535 + + ++ I+ ++ + + M+++ ++ IS++G Sbjct: 480 KGENSNFPDIFGLMPTDIITNGMQNAIATGNWNIKRFRMEKSGVSQVLSRLSYISSIGMM 539 Query: 536 ----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 + R R + P+ +G +CP +TPEG + GL+ +LS+ Sbjct: 540 TKTDSQFEKGRKVSGPRALQPSQFGILCPCDTPEGESCGLVKNLSLMTHVTSD-VPTPVL 598 Query: 592 RKVTDGVVTDEIHYLSAIEEGNYVI--------------AQANSNLDEEGH----FVEDL 633 + + + I LS+ + N N L V + Sbjct: 599 ETLLFTLGVEPIDTLSSHDMFNPWKGTSEKCDNLLNARLVLLNGILLGIHRNAKFLVNSI 658 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 + R +G ++F + + S G L L + + + +Q V Sbjct: 659 IKLRRRGLINMFVSVYENSQQN-QVHISSDGGRLCRPLIVVQNSVPRLTDELVQQLVENK 717 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 + L G+ + V+ + Sbjct: 718 IKMEYLFNNGILEWIDVNEENNLLIVM--------------------------------- 744 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 + L P + LG + +P+ +N Sbjct: 745 ------------------REKDITNLTTHLEISPMSILG-------VVAGLIPFPNHNQS 779 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 + ++ +I + R + P V + ++ + Sbjct: 780 PRNTYQCAMGKQSIG-SIGYNQFQ---RCDTVVHLMNYTQQPLVTTKTIQLVNFDKLPA- 834 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 + + A+ + +++D+ + + Sbjct: 835 ------------------------GQNAIVAVMSYQGYEIEDAIILNKASIDRGFARC-- 868 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 +T + + + + K +++ + V + + K Sbjct: 869 YTLRRLTCEITSGNATSLNGFNPSKSQNKDSDSNNEFVIGVGEQVSPGQVLISTKAPPTD 928 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRR--KITQGDDLAPGVLKIVK 1051 T+ + ++ K K+ K Sbjct: 929 FT-------TNGSMNGKGTDKNQKTGNDDKYIVNKYNLNTGGCIDRVILTENYNGNKMYK 981 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 + + R + GDK + RHG KGV+ I EDMP+ E+G D+++NP G PSRM +G+ Sbjct: 982 IMVRQSRPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTESGIVPDLIMNPHGFPSRMTVGK 1041 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 +LE ++ G+ +++ L + + Sbjct: 1042 LLELVASKSSVFSGNFVDSTPFSNSYSDNLCNDLNNSG---------------------- 1079 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 K ++I ++L G+ LY G +G + +G +Y Sbjct: 1080 -----------------SNKMSDICDILIKNGFHPKGKEILYSGISGNPINTLIFIGPIY 1122 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 +L H+V DK+HAR G +T+QP G+++ GG R GEME L AYG++ L E L Sbjct: 1123 YQRLKHMVTDKIHARGRGPRQPITRQPTEGRSRDGGLRLGEMERDCLIAYGSSNLLVERL 1182 Query: 1292 TVKSD----DVNGRTKMY-----KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + SD +V N + +P + +L +E++++ I L + Sbjct: 1183 MLSSDVFNIEVCSSCGFMGYNNFCKFCQNNSLAQVSLPYACKLLFQELQAMNIRPSLIVK 1242 >UniRef50_B9SHS2 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9SHS2_RICCO Length = 1139 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 178/1275 (13%), Positives = 372/1275 (29%), Gaps = 262/1275 (20%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F + K + + + + D ++ + + Sbjct: 48 RGLVKQHLDSFNYFVNIGIKKIVRANDRIVSTVDPGIYLRFKDVRIGTPSDIMDGVSEQ- 106 Query: 203 KLPATIILRALNYTTEQILDLFF----EKVIFEIRDNKLQMELVPERLR----------- 247 P L Y ++++ + + N + + +P LR Sbjct: 107 LSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGKDE 166 Query: 248 -----------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 F I+ KV + + + R I +K V A K Sbjct: 167 AELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKS 226 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY---ISETLRV 353 +++ L ++ + ++ + G + + + Y + ++ Sbjct: 227 KTIIQMEKEKMYLCLNQFVK-KIPIMVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEE 285 Query: 354 D---PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + AL + R+ + Sbjct: 286 CAGLSIYTQQKALEYLDGKENRALTILRDVFLA--------------------------N 319 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + + + +++++++ K +DD D++GN+R+ G++ F Sbjct: 320 VPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKT 379 Query: 471 VERAVKERL-----SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQ 513 + V+ + I I+ ++ + +Q Sbjct: 380 MITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERTLSTGNFDVKRFKMHRKGMTQ 439 Query: 514 FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN 573 + + + ++ + R+S + R R + P+ +G +CP +TPEG GL+ Sbjct: 440 VLVRLSYIASLGMMTRVS----PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVK 495 Query: 574 SLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE---GNYVIAQAN---SNLDEEG 627 +L++ E P + + +++ LS E ++++ Sbjct: 496 NLALMTHVTTD-DEEGPLISLCYCLGVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQ 554 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 +FV + R G+ F V+ + + S G + L D + + + + Sbjct: 555 YFVNSMRKLRRAGKIGEFVSVFVNEKQRA-VYLASDGGRVCRPLVIADRGVSRIKEHHMK 613 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 + +R + G+ + V+ A+ Sbjct: 614 ELRDGVRTFDDFLRDGLIEYLDVNEENNALVA---------------------------- 645 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 + GE + P T LG + +P+ Sbjct: 646 -----------------------LYEGEATPETTHIEIEPFTILG-------VCAGLIPF 675 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 +N + ++ + R L + P + + + Sbjct: 676 PHHNQSPRNTYQCAMGKQAMGNI----AYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGY 731 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 + + A+ D++D+ + + Sbjct: 732 DKL-------------------------GAGQNATVAVMSYSGYDIEDAIVMNKASLDRG 766 Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 V + + K + L+ E ++L+ + ++ + + Sbjct: 767 FGRCIVMKKYPAIRQKYENGASDRILR--PDRTVERERVLDYDGLAAPGEIIKPSDIYVK 824 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 K + ++ E + + L+ + E Sbjct: 825 KECPIDTMGPVKSSAALENIKYRPSPLSYKGPE---------GESPVIDRVALSSDRNNN 875 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 +KV + RR + GDK + RHG KGV I ED P+ E G D+++NP G PSRM Sbjct: 876 LCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRM 935 Query: 1108 NIGQILETHLGMAAKGIGDK-----INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 +G+++E G A G V + E + Sbjct: 936 TVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVEAISETLVNRGFSYNGKDIIYSGI 995 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 G P+ +F Sbjct: 996 ---------------TGCPLQAYIF----------------------------------- 1005 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 +G +Y KL H+V DKMHAR G ++T+QP G+A+ GG R GEME L AYG Sbjct: 1006 ----MGPIYYQKLKHMVLDKMHARGNGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYG 1061 Query: 1283 AAYTLQEMLTVKSDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNVL 1326 A+ + E L + SD + + +G++ +P + +L Sbjct: 1062 ASMLIFERLMISSDPFEVQVCRVCGLLGYFNQKLRAGICSTCKNGDNISTMKLPYACKLL 1121 Query: 1327 LKEIRSLGINIELED 1341 ++E++S+ I L+ Sbjct: 1122 IQELQSMNIVPRLKL 1136 Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 47/251 (18%) Query: 5 YTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY-S 63 K F P+ L V L+ LDSF F+ G++ R+ I S Sbjct: 28 TAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV------NIGIKKIVRANDRIVSTVD 81 Query: 64 GNSELQYVSYRLGEPV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV 114 L++ R+G P C++ TY+AP+ V + + + Sbjct: 82 PGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTR-- 139 Query: 115 KDIKEQEVYMGEIPLM------------------------TDNGTFVINGTERVIVSQLH 150 +++ +V +G +P+M G FVI GTE+VI+ Q Sbjct: 140 --VEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQ 197 Query: 151 RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIIL 210 S K + + V + + + + + +K+P +++ Sbjct: 198 LSKNRIIIDTDKKGNINASVTSSTEATKSKTI---IQMEKEKMYLCLNQFVKKIPIMVVI 254 Query: 211 RALNYTTEQIL 221 +A+ ++Q + Sbjct: 255 KAMGMESDQEV 265 >UniRef50_Q2ST48 DNA-directed RNA polymerase subunit beta n=161 Tax=Bacteria RepID=RPOB_MYCCT Length = 1287 Score = 637 bits (1642), Expect = e-180, Method: Composition-based stats. Identities = 380/979 (38%), Positives = 571/979 (58%), Gaps = 86/979 (8%) Query: 95 PLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPG 154 P +++ ++ ++ + V K EV++G+ PLMT+ GTF+ING+++VIVSQL RSPG Sbjct: 157 PDLIQIDIIEDKKTSLICNVSIYKSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPG 216 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN-------LFVRIDRRRKLPAT 207 +F+ + + +G+++Y A IIP RG+WL++E D K L+V+ID+ RK AT Sbjct: 217 AYFNKELNRK--TGEMIYFADIIPSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTAT 274 Query: 208 IILRALNYTTEQILDLFFEKV-------------IFEIRDNKLQMELVPERLRGETASFD 254 +L A + + IL++F F+I + E+ + +GETA+ + Sbjct: 275 SLLLAFGISKDDILNIFDNDEVLVETLQQDSIIGDFKIDWSNQVQEIYKKIRQGETATSE 334 Query: 255 --IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + +K + + R K + + I KV+A+D +D + ++ A Sbjct: 335 GASKFINSILFDKRKYDLTKAGRFKLKQKLSI----KNRILNKVIAEDILDANNN-VLIA 389 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 + E++ + + ++S+ + + ++ L P + + R+ + Sbjct: 390 KDTEVTKNNIQEISKILDQDVMSIDLKYLSDIPGNRKVQK--------------IRVYKD 435 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 E T + ++ DI+ + L Sbjct: 436 SELKTDTTCL--------------------------IGLTNSSNEEFITVADILSTVSYL 469 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM 492 ++++ GE+DDID+LGNRR+R+VGE+ +NQFR+GL R+++ VKE+L+ DL + + Sbjct: 470 LNLKYNIGEIDDIDNLGNRRVRTVGELLQNQFRMGLNRIDKNVKEKLATSDLYKVKTSTI 529 Query: 493 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 INAKP++A + EFF SQLSQFMDQ NPLSE+T+KRR++ALGPGGL+R+RAG EVRDVHP Sbjct: 530 INAKPLTAIIGEFFNLSQLSQFMDQINPLSELTNKRRLTALGPGGLSRDRAGLEVRDVHP 589 Query: 553 THYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE-IHYLSAIEE 611 +HYGR+CPIETPEGPNIGLIN+LS YA+ NEYGF+ TPYRKV +G++ ++ + YL+A +E Sbjct: 590 SHYGRICPIETPEGPNIGLINNLSTYARVNEYGFITTPYRKVINGIIQNDQVEYLTADQE 649 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 N++IAQ+N N DE G +++++ R G+ + +++ Y+DVS +Q+VSV S IPFL Sbjct: 650 KNFIIAQSNVNQDENGKILDEIIVSRFNGDDYMAKVEEIHYIDVSPKQIVSVATSGIPFL 709 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 E+DDANRALMGANMQRQAVP ++ + P+V TG+E A DSG VAK +V+YVD+ Sbjct: 710 ENDDANRALMGANMQRQAVPLIKPESPIVATGIEFEAARDSGEAIVAKEDAIVKYVDSKT 769 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 I + GE+GI Y L+ Y RSN T + Q P V +G+ V++G+++ADGPS D Sbjct: 770 I--------ITDGESGIRTYILSDYERSNNGTSLTQSPIVKVGDVVKKGEIIADGPSMDQ 821 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 GELA+GQN+ VAF +NGYNFED+I++SER+V +DRFT+IHI E R+TK G EE+T Sbjct: 822 GELAIGQNVVVAFSTYNGYNFEDAIVMSERIVIDDRFTSIHIDEYTLEVRNTKQGQEEVT 881 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 +IPN+ E A LD GIV IG EV GD+LVGKVTPKG+ QL+PE+KLL AIFGEK+ Sbjct: 882 REIPNMSEQAKRHLDAEGIVAIGTEVKVGDVLVGKVTPKGQVQLSPEDKLLHAIFGEKSR 941 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTR------DGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 +VKD+SLRVPNG G V ++ F DG+E +E+ ++ + Q +K + Sbjct: 942 NVKDNSLRVPNGGEGIVQSIKRFKAKSALNPDGIELPADIIEVIKVYVVQKRKIQEGDKM 1001 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 G I +L + D P D L + N + L + Sbjct: 1002 SGRHGNKGIISRILPIEDMPH-LEDGTPVDIILN-PQGVPSRMNIGQILEIHLGMAAKKL 1059 Query: 1026 EKKLEAKRRKITQGDDLAP 1044 +K+ + +L Sbjct: 1060 NQKVITPVFEGLNEKELEE 1078 >UniRef50_A9A459 DNA-directed RNA polymerase n=5 Tax=Thaumarchaeota RepID=A9A459_NITMS Length = 1115 Score = 631 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 229/1374 (16%), Positives = 415/1374 (30%), Gaps = 312/1374 (22%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 K + +L + L+SF +F+E+ GL++ + G +++ Sbjct: 7 KRWPVIQDILKREGIARQHLNSFDEFLER------GLQSII-------NEVGQIDIENAE 53 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 Y P +++L +K Q+ P M Sbjct: 54 Y---------------------PYKIQL--------------GKVKLQQ------PRM-- 70 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 ++G+ I R V Y+A ++ D Sbjct: 71 ---MELDGSITHITPAEARLRNV---------------SYSAPVMMEASVVED-----GK 107 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 L R +P A L Sbjct: 108 ILESRFVHIGDVPVMAKSNACILHNFSTQKLVEHGEDPN----------------DPGGY 151 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV--EYIAGKVVAKDYIDESTGELI 310 F I + +V V + I E ++ I G + + ++ G ++ Sbjct: 152 FIINGSERVIVGLEDLSYNKIIVDRETVGGNIVHKAKVYSSIVGYRAKLELVMKNDGLIV 211 Query: 311 CAA-NMELSLDLLAKLSQSGHKRIETL---FTNDLDHGPYISETLRVDPTN-DRLSALVE 365 + + ++ + G + + + + + + A+V Sbjct: 212 ARIPGSPVDIPVVTLMRALGLESDREIAAAVSLVDELQDELEASFEKAGDVPTAKDAIVY 271 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 I + + PG E + D L +G+ + + Sbjct: 272 ISKRIAPGMLE-----EFQIKRAETLLDWGLLPHLGKH-----------PENRKEKAQFL 315 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 + KL++++ DD DH GN+ I+ G+M + FR + R +K +L Sbjct: 316 GEAACKLLELKLDWIRPDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERSGQK 375 Query: 486 T--LMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPG 536 I I+ + + +Q +D+ N LS I+H RRI + Sbjct: 376 RGINAVAAAIRPGIITDKLNNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQS---- 431 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 L+R + FE RD+H TH+GR+CP ETPEG N GL+ +L++ + E K+ D Sbjct: 432 PLSRTQPNFEARDLHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYD 491 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEE----GHFVEDLVTCRSKGESSLFSRDQVDY 652 + T + + + L E L R + Sbjct: 492 -LGTVHFFDAKEDLKKDGTRIFVDGRLIGYYKDGEQLAESLRDLRRNSKI---------- 540 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL--RADKPLVGTGMERAVAV 710 VG S R + N R P + + +KPL+ + ++ Sbjct: 541 -------HPHVGVSFHKSEIEGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISK 593 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 R GV++ +DA+ + + Sbjct: 594 KLISWTDLLRMGVLEMIDANEEENCYVTLDEKDTK------------------------- 628 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 + L P LG + +P+ +N + ++ + Sbjct: 629 --------KHTHLEVFPPAILG-------AGASIIPYPEHNQSPRNTYESAMAKQSLGFS 673 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + + R + +P V A+ L Sbjct: 674 TPMMNTSTYVR----QHFMLYPQVPIVNTKAMKLL------------------------- 704 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 G + + A+ +++D+ + V + F E + + + Sbjct: 705 GLEDRPAGQNCVVAVLPFDGYNIEDAIVLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRD 764 Query: 951 MQL------KQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 ++LE A + G + K PR Sbjct: 765 AFEIPNAEDNIRGYKGERAYRLLEEDGVVATEAPVKGGDILIGKTSP-PRFMEEYREFES 823 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + + + E T + K+ K+ R + GD Sbjct: 824 SGPYRRDTSIGVRPSETG-----------VVDTVVMTQSNEGGKMYKIRARDMRIPEIGD 872 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 K A RHG KGV+ + ED+PY +G M+ ++ H + + Sbjct: 873 KFASRHGQKGVLGILAKAEDLPYTASG---------------MSPDVLINPHAFPSRMTV 917 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G + E + +G Sbjct: 918 GMMM---------------------------------------ESICGKSAALRGKRFDG 938 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 F G K E++E++ SG+ +YDGRTG+ F V +G +Y KL+H+V DK+H Sbjct: 939 SAFVGEKMDEVREVMDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIH 998 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNG 1300 AR+ G ++T+QP G+A+ GG RFGEME L AYGA+ L++ L +SD V Sbjct: 999 ARARGQVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCE 1058 Query: 1301 RTK------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 R + + D + +F +LL+E++SL + L + Sbjct: 1059 RCGLVAYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRLLIK 1112 >UniRef50_Q5CSG7 DNA-directed RNA polymerase n=92 Tax=Eukaryota RepID=Q5CSG7_CRYPV Length = 1281 Score = 629 bits (1623), Expect = e-178, Method: Composition-based stats. Identities = 201/1446 (13%), Positives = 401/1446 (27%), Gaps = 316/1446 (21%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQI 87 + ++SF F+ GL+ +++ I SG + +C Sbjct: 13 VWPHIESFNTFL------SVGLKNIVKNLPKIYVDSGFIQ---------------DDC-E 50 Query: 88 RGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVS 147 YS +++ + + P + +GT+ + Sbjct: 51 LNAAYSPAEYLRIGVTSAKIGKPIFGNSES---------------------SGTK--LTP 87 Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID--RRRKLP 205 Q R+ + + + WL+FE V +P Sbjct: 88 QHARNGHISYSAPL---------------------WLEFEGYNSSLDTVSKHSIYAGTIP 126 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 + + + +L + F I N +V Sbjct: 127 IMVKSSSCHLFGLGTKELVEKGEDPNEVGG----------------YFIINGNERVIRYV 170 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 ++ I EY +D + L ++ + +L Sbjct: 171 IQQRCNYPIGLKRPRFATFDSFGSEYAVLMRSLRDDGTSTANYLYGTSDHQCIYRVLLNR 230 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR-------------- 371 + L + + + + N + L M+ Sbjct: 231 QEWLIPFWPLLMAVGSIYDSNVLRSKILQYCNPKDENLFNTINMLTLEWGLDNSVGVDAE 290 Query: 372 ----------PGEPPTREAAESLF-------ENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 PG+ E F L GR + +L Sbjct: 291 FNSVSFGNKGPGDTDILENRYLHQIGRLVWEGVAFHLPPGSLLQEAGRFLIDNYVLVHLE 350 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 E + + +I + KLI ++ + + ID + + S G + F+ + + Sbjct: 351 EWN--AKLECLILMFIKLIKLQLNEIREESIDSFAYQELLSPGNLYSALFKDAIFSFLQK 408 Query: 475 VK-------------ERLSLGDLDTLMPQDM-------INAKPISAAVKEFFGSSQ---- 510 ++ + + L+ N I ++ F + Sbjct: 409 IRSTYLIEIRSKSGEKNKESKNGVNLLRDTAYFKSVLSKNISMIPKRLQYFMATGNVKTT 468 Query: 511 ---------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 + D+ N ++H R A+ G +VR + +G +CP+ Sbjct: 469 QLDLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMKTTDVRKLTGETWGFLCPV 525 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEI------------------ 603 TP+G GL+ LS + R++ + +++ I Sbjct: 526 HTPDGEPCGLLLHLSQDCIPVTQWDSQETLRRLRNYLISHGISCDDGLGSLSSTWGIESS 585 Query: 604 --HYLSAIEEGNYVIAQANSNL------DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 L + + + + + ++ + L T + + + V Sbjct: 586 SRDDLYSPDLTKSIPVMLDGRVLFHIPREDFMVWENKLRTLK-WQTNPSVLPVHAEIACV 644 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAVDSG 713 + + + F R +M + P + + T E + Sbjct: 645 PP--DSGMFSGIYIFTAPGRLVRPIMHLETAQVDWIGPLGQPWMNIGVTEEETRKSTKLL 702 Query: 714 VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL 773 I I E E + L K + + ++ +P Sbjct: 703 EIQKRL------------IGISDTESEEQLKNDLKALKKLIK----DNDRVLSSVPVNYT 746 Query: 774 GEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHI 833 + +L+ + + +P+ +N + +++++ T Sbjct: 747 HMELHPSTILS---------------VTASLIPYAHHNQSPRNMYQCQMLKQTMGTPCLN 791 Query: 834 QELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET 893 ++ + +T P I+ + G + Sbjct: 792 HPYRTDNKMYR----LLTPQEP-------------------------TIITKGYSSFGFS 822 Query: 894 QLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK----RALEIE 949 + + A+ D++D+ + + + V+ + + + E Sbjct: 823 EYPTGTNAIVAVMSYSGYDMEDAMILNKSSYDRGMFHACVYKTKIISAAPPSATKKSDAE 882 Query: 950 EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN 1009 D ++ L A I L G + Sbjct: 883 SYFFHNIGPDGELVVKELSADGLPNIGQRLTKGSPICRVERIGSGGGPSNATIQTYHDDE 942 Query: 1010 QLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 E + ++ G + G + V + L + R GDK A R Sbjct: 943 VAFVEKINRIASGISIELQQDSLSGGGGDGASSSSGYGEKVSIKLRIVRNPMVGDKFASR 1002 Query: 1070 HGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK-I 1128 HG KG++S + P E+MP+ E+G DI+ NP G PSRM IG +LE+ G AA G + + Sbjct: 1003 HGQKGILSMLWPQENMPFSESGMVPDILFNPHGFPSRMTIGMLLESMGGKAACIHGARSL 1062 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 +A L + D A Sbjct: 1063 DATPFNINISDDLSRSEENCEDDKAGE--------------------------------- 1089 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 + L+ G LY+G TG + + +G +Y +L H+V DK R+T Sbjct: 1090 KTTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQRLRHMVADKAQVRAT 1149 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----- 1303 G +T+QP+ G+ + GG RFGEME +L +YG + L + L + SD+ Sbjct: 1150 GPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSILVDRLLICSDEHRAYVCPKCGL 1209 Query: 1304 ---------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 + + +P F L E+ ++ I Sbjct: 1210 IISSISKRAMAQSMSSSKLSNCIPPIAVCRVCKSPCRI--ITLPYIFRYLSNELAAMNIV 1267 Query: 1337 IELEDE 1342 I L + Sbjct: 1268 IRLHLQ 1273 >UniRef50_Q9P7X8 Probable DNA-directed RNA polymerase I subunit RPA2 n=10 Tax=Ascomycota RepID=RPA2_SCHPO Length = 1174 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 194/1424 (13%), Positives = 387/1424 (27%), Gaps = 332/1424 (23%) Query: 1 MVYSYTEKKRIRKDFGKRPQVL-DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI 59 M + E++R K+ K D+ + +DSF L A + + Sbjct: 1 MSFQTLERERTFKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGL-----LNYAVKEIGEK 55 Query: 60 QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 ++ + E A + K Sbjct: 56 CAFD-------------------------------------SITQEEGGALKFGNKISFR 78 Query: 120 -QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 EV + + P+++ IN V+ + + + L Sbjct: 79 VDEVQIAK-PMLSSRERSSIN-------------RKVYPAEARERLTTYKSRLVLKFSWS 124 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 G E + +P + + +L K E Sbjct: 125 VNGGPRQSE----------MREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFI 174 Query: 239 MELVPERLRG---ETASFDIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIA 293 + + + +R + + +G + IR + D L Sbjct: 175 VNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNN 234 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G + + + ++ + ++ L+ K G + T D + + Sbjct: 235 GVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKS 294 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 + L + R + + VGR + +L Sbjct: 295 YGLYSQTETLQYLGSKFR---------------VVLGVAEDLTDVEVGRFLLQKVVLVHL 339 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 E ++ +++KL + G+ D+ D ++ I G + + + Sbjct: 340 REAK--DKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLN 397 Query: 474 AVKERLSLG-----------DLDTLMPQDMINAKPISAAVKEFFGSSQL----------- 511 +++ +++L D L I ++ F + L Sbjct: 398 SIRAQINLDVRRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQA 457 Query: 512 ---SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 + ++ N ++H R + G E VR + P +G +CP+ TP+G Sbjct: 458 TGYTVVAEKLNFYRFLSHFRMV---HRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSP 514 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG- 627 GL+N L+ + + + + + D + E + Q + + Sbjct: 515 CGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVVGH--ESGWGCVQLDGKIVGWCT 572 Query: 628 -HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 + + + + + + + + +P + + +N Sbjct: 573 YKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPA 632 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 R P + TG + V I E+ Sbjct: 633 RMVRPVK-----HISTGELDMLGPFEQVYMD----------------IACFPKEIV---- 667 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 P VS +VL+ + P Sbjct: 668 ----------------------PKVSTHVEYSPTNVLSIVANM---------------TP 690 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 ++ +N + ++ ++ T ++ +L T P V + Sbjct: 691 FSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDNKLYRLQ----TGQTPVVRPKLHNTYG 746 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 + A+ D++D+ + + Sbjct: 747 LD-------------------------HYPNGTNAVVAVISYTGYDMEDAMILNKSAHER 781 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 V+ + + ++ E + Sbjct: 782 GFGYGTVYKGESFDLSQKRRRGEPVVHHFG---------------------FAPGSTPRR 820 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAP 1044 E L KL D +G+ E+ + E + + G+D+ Sbjct: 821 EWLQKLDADGLPFIGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGD 880 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 + + V L + R GDK + RHG KG+ S+ P DMP+ E+G DI++NP Sbjct: 881 SECQQIHVKLRITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAF- 939 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 + IG I ++ A GA D + F Sbjct: 940 --------------PSRMTIGMFIESL----------------AGKAGACHGLAQDSTPF 969 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E A E L G +Y G TG++ + Sbjct: 970 IYSEQQTAA-------------------DYFGEQLVKAGYNYHGNEPMYSGITGQEMKAD 1010 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + +G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME A+ +G + Sbjct: 1011 IYIGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTS 1070 Query: 1285 YTLQEMLTVKSDD----VNGRTK--------------------MYKNI------------ 1308 + +Q+ L SD V ++ Sbjct: 1071 FLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCAKPALGLEDTSD 1130 Query: 1309 ----------VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 V G + +P FN L E+ ++ I + LE + Sbjct: 1131 IWQDGSGKKFVGGTNTTLIALPSVFNYLTAELTAMNIKMMLEVK 1174 >UniRef50_C6LZ34 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=C6LZ34_GIALA Length = 1239 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 204/1408 (14%), Positives = 425/1408 (30%), Gaps = 269/1408 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 + L + LDSF ++ + + + L+ Sbjct: 20 DRWRLIHSYLMTESITKHHLDSFNHLLDVTIPAIIKENPLL-----VVAKHPHFYLRIEK 74 Query: 73 YRL----------------GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 + G EC+ R +TY+AP+ + +R + + + Sbjct: 75 VDVKQVSHGSSKSPGSSTGGNVGLTPHECRQRNMTYAAPITIDVRCRASNKSSVQ----- 129 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKVLY 172 +++ +G IP+M + ++ R + P G F K+ + + Sbjct: 130 -YYKDICIGYIPIMLRSNRCILANKSRKQQAFFQECPDDPGGYFIVRGAEKSILLAEQIT 188 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 RI+ R + + E N R R + ++ F + Sbjct: 189 MNRIVLGRNTDGNIEVTVASNTTERKSRC--------------------AVLYKNKKFYL 228 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH---IRQLEKDDVKLIEVPV 289 NK + +P + F + + + +++ D + E + Sbjct: 229 IHNKFNKKPIPIVTIFKAMGFVNDVTVLSLIGTDQLFLDYMSLSVQECSNDKIYTQEQAL 288 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 +Y+A ++V + Y + + M + +S + + + ++ Sbjct: 289 KYLADRIVVRTYANTNVNFPTSPVAMTAKASI-----ESARDCLAHFVLSHIPVVERLNL 343 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 + SA + T + ++ S + N Sbjct: 344 QQVAQNIQPQTSASTASNTSVSTHTGTTATSVGGKSGSVSAMAKPAIGSGASVVASNTGS 403 Query: 410 LREEIEGSGIL---SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + + + ++++ I G + D D +GN++I + G++ E F Sbjct: 404 TAPPVNMARFNWLPKAVYLATMVRRAILFDFGVIKGDSKDFVGNKKIETAGDLLELIFDD 463 Query: 467 GLVRVERAVKERLSL---------GDLDTLMPQDMINAKPISAAVKEFFGSSQL------ 511 + + ++ + DL +++ I+ A + Sbjct: 464 AFKTLLAHMARKVDVILRSDKNRGTDLTNYDVVSLVDPSIITRAFNSAISTGNWKIERIG 523 Query: 512 ------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 SQ + + + +S + R+S+ + R ++ + G CP +TPE Sbjct: 524 VDRVGVSQVLSRLSYISTLGQVTRLSS----TFDKAMKSSGPRMLNFSQMGIFCPSDTPE 579 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL---SAIEEGNYVIAQANSN 622 G ++G++ +LS+ A+ ++ ++ K+ + +++ G + N Sbjct: 580 GESVGIVKNLSIMARISKDENADS-ISKLLMSIGVEDLASCWSGDTFSLGYGYMVFLNGT 638 Query: 623 LDEE------GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 + F+ L T R KG S L F +D+ Sbjct: 639 IKGVIAKDMLKGFIITLRTFRRKGYISY----------------------LTSFHFNDEH 676 Query: 677 NRALMGANMQRQAVPTLRADKPLVGTGM--ERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 + + R P L + + + + + G V+Y+D + Sbjct: 677 QAVYINCDSGRACRPLLIVENGKLKLTLNDIELLVNNQKCFVDFIYEGKVEYLDVNEAKN 736 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 +D +LT T LG Sbjct: 737 AY---------IAMDTKDLTPQH-----------------------THCEIESYTLLGY- 763 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 V +P+ +N + ++ R Sbjct: 764 ------VVGLIPYPHHNQSPRNCYQCSMGKQASG----AIAFNQFERFETAMFLLDYPQR 813 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 P L G +L + + + D++ Sbjct: 814 PLTSTKILKL-------------------------TGYERLPAGQNATVCVMSYSSFDIE 848 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVE------KDKRALEIEEMQLKQAKKDLSEELQILE 968 D+ + + + ++ E K + + + E +E Sbjct: 849 DALILNRSAIDRGFGRCSIYRSVSAELNSTGSKSVDGTKDVLLGPPKDHLKQYESYHAVE 908 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKK 1028 + A L G + K R + + E L + + LK E Sbjct: 909 DDGLCAVGAHLKTGDIVINK------GRHVTNIPGLSDGPEAAETLIKSPESLKSPLETI 962 Query: 1029 LEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD 1088 + +T +D ++KV RR + GDK + RHG KGV I D+P+ Sbjct: 963 TYIDKVLVTTNND----GNLLIKVLTREPRRPEVGDKFSSRHGQKGVCGLIVSQSDLPFT 1018 Query: 1089 ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 G D+++NP G PSRM + ++LE ++ G++ + + + + + Sbjct: 1019 SQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSSCFRGEQTDGTCFRTKTDEEFIAELY-- 1076 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 + L+ SG Sbjct: 1077 ------------------------------------------------DSLRAAGFSYSG 1088 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 + LY G TG+ + G +Y KL H+V DK+H+R TG +++T+QP G+ GG Sbjct: 1089 KDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVKDKIHSRGTGPITMLTRQPTEGRRVHGGL 1148 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--------------MYKNIVDGNHQ 1314 R GEME +YGA+ L E + SD+ G Sbjct: 1149 RMGEMERDCAISYGASALLLERFMLSSDEFLAYVCEACGLFSYERNGALWCPTCQSGKDV 1208 Query: 1315 MEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ +P + ++++E+ S+G+ + ++ E Sbjct: 1209 VKIRIPYAAKLMIQELISMGVLVRMQLE 1236 >UniRef50_B0EG45 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0EG45_ENTDI Length = 1170 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 194/1199 (16%), Positives = 370/1199 (30%), Gaps = 228/1199 (19%) Query: 204 LPATIILRALNYT-TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 +P+ + + + + F I+ + KV Sbjct: 139 IPSMLKSDVCRLKRCVTQPSMISKDECSFEQGG----------------YFIIKGSEKVV 182 Query: 263 VEKGRRITARHIRQLEKDDVKL-----IEVPVEYIAGKVVAKDYIDES--------TGEL 309 + + + + D +K I + + Sbjct: 183 IAQEKMAPNTVLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDYPKLDKSRLKIKVPV 242 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFT------NDLDHGPYISETLRVDPTNDRLSAL 363 + + M+ + ++ G++ + + ND + ++ ++ + A Sbjct: 243 LTLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTEDAR 302 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 + GE + E + E + + + L G K + LL + Sbjct: 303 RWL------GEHSKKTNKEGVIEIVSENIQK--LQRDGTEKLKKDLLPHIGTDNFESKAQ 354 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 + + + + GK DD DHL +R+ G + F+ L R+ + + +L Sbjct: 355 FLGYMTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQL 414 Query: 484 LDTLMPQDM--INAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRR 529 + ++ I++ + G+ +Q + + S + + R+ Sbjct: 415 SSNKTLEYAKPLSFPTITSDFTKALGTGNWPQPGGKESRHGVAQVLSRLTFTSALAYLRK 474 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 IS+ G +R + R +H T +G +CP ETPEG + GL+ LS+ AQ E Sbjct: 475 ISSPVEG----KRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQ 530 Query: 590 P--YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE----EGHFVEDLVTCRS---KG 640 ++ D I+ + + N N + +E+L R KG Sbjct: 531 VDEIKEALDCQYVCNINDCTGEKMNNITKVFLNGVWLKCSEQPQKLLEELKNYRKNSTKG 590 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 + V ++ + L N N+++ + L + Sbjct: 591 KVKKVMS-MVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQITELCSRLDNE 649 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 G E+ G+++YVDA + + M+P + Sbjct: 650 SNGTEKTKF-----WNNFLSKGIIEYVDADEEEMSM--IAMFPSDLDNT----------- 691 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 G + P+ +G L + +P+ +N Sbjct: 692 ------------EGGSSKNYTHCEIHPALVMGVLG-------SIIPFPDHNQSPRNTYQC 732 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + ++ ++ R LG P V A V G Sbjct: 733 AMGKQAIG--VYASNY--QLRLDSLGHVLFYPQKPLVSTRAAEY------------VKFG 776 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 I + A+ + +DS + + + F + Sbjct: 777 HI-------------PAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRSMAFKTFSED 823 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 A + E +L K + + + ++ G+ A P D + Sbjct: 824 ----AKKSETTELMFFKPSENNSEITEDISKYEKVD----VDGILAPGTKVKPDDILVAG 875 Query: 1001 GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRI 1060 ++ K + L + E A K ++V + R Sbjct: 876 FYENKNKTLKDCSLRYKPRENG-----------VVDQVVVTNAQSGTKYIRVKMRSIRIP 924 Query: 1061 QPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 Q GDK + RHG KG + EDMP+ G DI++NP +PSRM +GQ++E LG Sbjct: 925 QIGDKFSSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGKV 984 Query: 1121 AKGIGDKINAMLKQ-QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 +GD + Q V K+ E + + Sbjct: 985 GALVGDVQSGTPFQKDITVDKIGERLHKLKYQRRGYEAL--------------------- 1023 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 F G ++ + V +G Y +L HLV Sbjct: 1024 -------FSGHTGRKL--------------------------DSLVYIGPTYYQRLKHLV 1050 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DDK+H R+TG Y+ +T+QPL G+++ GG R GEME + ++G + L+E L + SD Sbjct: 1051 DDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKERLFLASDKYQ 1110 Query: 1300 GRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 D H + +P + +L +E+ S+ + + E Sbjct: 1111 IYVCDKCHMPAVANHKACTFQCSCCKDKTHISKVDIPYACKLLFQELMSMAVCPRIYTE 1169 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 56/390 (14%), Positives = 113/390 (28%), Gaps = 59/390 (15%) Query: 1 MVYSYTEKKRIRK-DFGKRPQVLDVPYLLSIQLDSFQKFI----EQDPEGQYGLEAAFRS 55 M + ++ + L+ QL S+ FI + +E + Sbjct: 1 MQANLPSQQIQPDQFWYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEISNAE 60 Query: 56 VFPIQSYS-GNSELQYVSYRLGEPVFD----------VQECQIRGVTYSAPLRVKLRLVI 104 V I + + P E ++R +TY+ L VK + I Sbjct: 61 VLGISANDEEEHTIVLTDPIFHFPKVSTGSKASASLFPHEARLRSLTYACQLEVKAKDTI 120 Query: 105 YEREAPEGTVKDIKEQEVYMGEIPLMTDN-------------------------GTFVIN 139 + E T ++ + IP M + G F+I Sbjct: 121 RKNGTEEITT----VPKIDIASIPSMLKSDVCRLKRCVTQPSMISKDECSFEQGGYFIIK 176 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 G+E+V+++Q +P + K Y I + + + ++D Sbjct: 177 GSEKVVIAQEKMAPNTVLVFEGSDQL---KYPYEGNINSLASN-DEVRTHKIRMDYPKLD 232 Query: 200 RRR---KLPATIILR-ALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 + R K+P + R + + + +I + E E + I Sbjct: 233 KSRLKIKVPVLTLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMY--NIVTTAI 290 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 +AN E RR H ++ K+ V I + + +D ++ +L+ Sbjct: 291 QANECTTTEDARRWLGEHSKKTNKEGVIEIV----SENIQKLQRDGTEKLKKDLLPHIGT 346 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 + L + + Sbjct: 347 DNFESKAQFLGYMTNHFLSVYTGKRNGDDR 376 >UniRef50_B9WJL4 DNA-directed RNA polymerase n=11 Tax=Saccharomyceta RepID=B9WJL4_CANDC Length = 1166 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 186/1286 (14%), Positives = 356/1286 (27%), Gaps = 287/1286 (22%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS-WLDFEFDPKDNLFV-RIDR 200 RV QL P V + + R++ YR L+ + D V + Sbjct: 80 RVDSVQLA-KPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDGEEVSEVRE 138 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDIEA 257 ++P + + L K + + + + +R + + + Sbjct: 139 AGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAI 198 Query: 258 NGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + +G T IR + D V G V + ++ + + Sbjct: 199 IRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMIL 258 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + ++ + G +T + D + T + + L + R Sbjct: 259 KALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFG 318 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 + + ++ VG+ R +L + ++ +++KL + Sbjct: 319 ASPDMSDI---------------EVGKEVLKRIVLVHLP--NNTDKFRMLLFMIRKLYSL 361 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG----------DLD 485 G D+ D ++ + G + + + + +K ++ D Sbjct: 362 VAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRK 421 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRIS 531 + + I ++ F + L + ++ N I+H R + Sbjct: 422 YMTRVFSRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMV- 480 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 G E VR + P +G +CP+ TP+G GL+N LS + + Sbjct: 481 --HRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQV 538 Query: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE-----GHFV-EDLVTCRSKGESSLF 645 K + +A N Q + + G V + L + G L Sbjct: 539 PKALTQLGVLPADSFAAG--PNLCCVQLDGRIVGWTTHEQGRIVADTLRYWKVNGGHGLP 596 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 ++ Y +P + R P + E Sbjct: 597 LDLEIGY---------------VPPSNKGQYPGLYIFGGRSRMMRPV-----RYLPLDKE 636 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 V V + P E +I++ ++T +N + Sbjct: 637 DIVGPFEQV---------------------YMNVAVTPEEIENNIHSHVEFTPTNILS-- 673 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 + P++ +N + ++ ++ Sbjct: 674 ----------------------------------ILANLTPFSDFNQSPRNMYQCQMGKQ 699 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 T ++ +L T P V Sbjct: 700 TMGTPGTALVHRSDNKLYRLQ----TGQTPIVKANLYDDYGMDNFP-------------- 741 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 + A+ D+ D+ + + E+ Sbjct: 742 -----------NGMNAIVAVISYTGYDMDDA---------------MIINKSADERGFGY 775 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + + + + I + F +KL D +G+ E Sbjct: 776 GTVYKTEKVDLSQSRRRGDPITQHFGFG-------TDEWPEAWKEKLDADGLPLIGVKVE 828 Query: 1006 EKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 E + + + K + GDD + + + + R+ G Sbjct: 829 EGDPIVAYYDDTLGKTKVKTYHSSEPGYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIG 888 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DK + RHG KGV S+ P DMP+ E+G D+++NP PS Sbjct: 889 DKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPS---------------RMT 933 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 IG + ++ A GA D + + E A Sbjct: 934 IGMFVESL----------------AGKAGALHGIAQDSTPWKFNEQDTPA---------- 967 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 E L G +Y G TGE+ + +G +Y +L H+V+DK Sbjct: 968 ---------DYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKF 1018 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VN 1299 RSTG + +T QP+ G+ + GG R GEME AL +G ++ LQ+ L SD V Sbjct: 1019 QVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVC 1078 Query: 1300 GRTKM------------------YKNI-------------------------VDGNHQME 1316 + V G+ Sbjct: 1079 RSCGSILTTQTSVPRIGSMASIRCRRCAVSLDKYEGYAADSDIWEDGHGKKFVGGDDTTT 1138 Query: 1317 PGMPESFNVLLKEIRSLGINIELEDE 1342 +P L E+ ++GI + E Sbjct: 1139 VAIPFVLKYLDSELSAMGIKMRYNVE 1164 Score = 96.1 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 94/305 (30%), Gaps = 68/305 (22%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIE-------QDPEGQYGLEAAF 53 + +R ++ + P L ++ + SF ++ G + F Sbjct: 5 KFRTLEREKRFQNPPKDMNSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGTKTIF 64 Query: 54 RSVFPIQSYSGNSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLRVKLR 101 + +++ S +L +P EC+ R VTY + L + + Sbjct: 65 DTPETSGRLGNKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVT 124 Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN------------------------GTFV 137 + + E + G+IP+M + G F+ Sbjct: 125 WSVNDGEEVSEVREA--------GQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFI 176 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDP 190 +NG E++I + + + + + Y I R D + Sbjct: 177 VNGIEKLIRMLIVQRRNH-PMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLN 235 Query: 191 KDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 N+ R R+ +P +IL+AL T + F+ ++ +N + + LR Sbjct: 236 DGNVTFRFSWRKNEFLVPVVMILKALIETND---REIFDGIVGNDTENSFLTDRLELLLR 292 Query: 248 GETAS 252 Sbjct: 293 TYKTY 297 >UniRef50_C9RQN5 DNA-directed RNA polymerase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQN5_FIBSS Length = 1429 Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 367/796 (46%), Positives = 502/796 (63%), Gaps = 91/796 (11%) Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL---VTCRSKGESSL----- 644 V + +V+D I YL+A EE ++ +A A++ LDE F D+ V R K E Sbjct: 670 DVVEQIVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYVIVRDKSEYPHLMKQD 729 Query: 645 ------FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 +++D MDV+ Q+VSV A LIPFLEHDDANRALMG+NMQRQAVP LRA+ P Sbjct: 730 SIAIGDTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLLRAEAP 789 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK--------------VNEDEMYPG 744 +VGTG+ER A+DSG AK G V +VDA I ++ + E+ + G Sbjct: 790 VVGTGLERRAALDSGTVVRAKHDGKVTFVDARNITVQRGKMVNGVFEPLTGLGENYEFLG 849 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 + ID Y L K+ RSNQ++CINQ P V++G+ VE GDVLADG STD GELALG+N+ + F Sbjct: 850 KDPIDEYTLRKFERSNQDSCINQKPIVNVGDFVEVGDVLADGVSTDHGELALGKNILIGF 909 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 +PWNGYN+ED++++SE + +D FT+IHI+E RDTK GPEE+T +IPNVGE AL Sbjct: 910 LPWNGYNYEDAVIISEELAIKDTFTSIHIEEYEMEVRDTKRGPEELTREIPNVGEDALRN 969 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 LDE+G++ +GAEV DILVGKVTPKGET+LTPEE+LLRAIFGEKA DV+DSSL+ P G+ Sbjct: 970 LDENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEKAGDVRDSSLKAPPGM 1029 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 G V++ ++F++ + DK++ E ++ +++ +++ ++ ++ + +L Sbjct: 1030 KGVVLETRIFSKK-DKADKKSKEKDQETIEEIRQNFQSQIDRIKDACREHLFDLLAGKSA 1088 Query: 985 ----------------------EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK 1022 +D + D++ Q+++ L + Sbjct: 1089 GKVMDNETHELLIREGQTYNEQNLRLIDVTKVSPLSTFVVDDDDLQDKVLSLVLVARDNL 1148 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 + +E + K+T+GD+L PGVLK VKVY+A KR + GDKMAGRHGNKGV+S+I P+ Sbjct: 1149 DTLTRTMEKEIDKVTKGDELKPGVLKSVKVYIAKKRCLSIGDKMAGRHGNKGVVSRIVPV 1208 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMP+ E+G P+ I+LNPLGVPSRMNIGQ+LE HLG AAK +G K+ + + + Sbjct: 1209 EDMPFTEDGRPLQILLNPLGVPSRMNIGQVLEVHLGWAAKTLGFKVTTPVFDGAKFEDIC 1268 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 + +++AY V ++D Sbjct: 1269 KELEKAYQKNPIVNYEMDPDNNKII----------------------------------- 1293 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 G+ +LYDG+TGE PVT+GYMY LKL HLVDDK+HARS GSY+LVTQQPLGGK Sbjct: 1294 -----GKAKLYDGKTGEALLNPVTIGYMYYLKLGHLVDDKIHARSIGSYALVTQQPLGGK 1348 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPES 1322 +QFGGQRFGEMEVWA+EAYGAAYTLQE+LTVKSDDV GR+K+Y IV G + +PG+PES Sbjct: 1349 SQFGGQRFGEMEVWAMEAYGAAYTLQELLTVKSDDVQGRSKVYDAIVKGQNTPKPGIPES 1408 Query: 1323 FNVLLKEIRSLGINIE 1338 FNV+++E+ SLG++IE Sbjct: 1409 FNVMIREVHSLGLDIE 1424 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 295/1094 (26%), Positives = 476/1094 (43%), Gaps = 128/1094 (11%) Query: 10 RIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG----QYGLEAAFRSVFPIQSYSGN 65 RK + L++PYL+ +Q S+++F+++D GLE FR +FPI Sbjct: 3 TERKSYSSNKFHLELPYLIEVQKASYEQFLQKDIPQEKRMNVGLERVFRDIFPITDDKDL 62 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 L+Y Y G P + + EC+ RG+TYS L L L ++E++ E +K+ + +V + Sbjct: 63 YSLKYEGYYFGIPKYSIPECRERGLTYSMELFATLSLQVFEKDGEESKLKEEIKNDVLVC 122 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 ++P+MT+NGTF+ING ERV+VSQLHRSPGV FD + +G+ Y +RIIP+RG+W++ Sbjct: 123 DLPIMTENGTFIINGAERVVVSQLHRSPGVSFDEEMQ---PNGRSDYKSRIIPHRGAWVE 179 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPE 244 F + D L++ IDR++K+ AT +LR + + TT+ IL+LF++K + D+ + E Sbjct: 180 FNTEG-DILYLIIDRKKKIAATAMLRCIGFETTQDILNLFYKKTDEIVLDDAAFNDFDKE 238 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 + + +++ D +DE Sbjct: 239 GVCT-------------------------------------------LINRIIFNDVVDE 255 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 TGE+I AN + L +L +S ++I L + + I TL D T R AL Sbjct: 256 ETGEIILEANTVIDDKKLERLRESSVEKITVL--SKEEDNLLIHYTLAADKTKSREDALK 313 Query: 365 EIYR--MMRPGEPPTREAAESLFENLFFS-EDRYDLSAVGRMKFNRSLLR---------- 411 +Y + E P + AE F+ LF + +YDL VGR + N + Sbjct: 314 AVYSVTHQQQEEAPNLQTAERYFDELFLNDPHKYDLGEVGRYRLNAKVYTAAILAKVKEV 373 Query: 412 -----------EEIEGSGILSKDDIIDVMKKLIDIRNGKG--EVDDIDHLGNRRIRSVGE 458 +SK D + +++ ++ + NG +DDIDHLGNRR RSVGE Sbjct: 374 AERFDRVNEFKMPSVTQMTMSKTDFLAIIEYMVGLFNGDEGYTLDDIDHLGNRRTRSVGE 433 Query: 459 MAENQFRVGLVRVERAVKERLSLGDLDTL-MPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 + Q VGL R+ R ++E LSL + P++++N + +S V+ FFG SQLSQFMDQ Sbjct: 434 LLAGQISVGLSRMSRVIRENLSLHSEEEQTTPRELVNTRMVSTVVQAFFGQSQLSQFMDQ 493 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 NPLSE+THKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ Sbjct: 494 MNPLSELTHKRRLSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLINSLAS 553 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 YA N +GF+ETPYR V D E + + + FVE +T + Sbjct: 554 YAVVNHFGFIETPYRIVGLVEFKDAQGNKCYFPEEKWHFGIFKGFVHDPHLFVELELTQK 613 Query: 638 SKGESSLFSRD---QVDYMDVSTQQVVSVGASLIPFLEH----DDANRALMGANMQRQAV 690 L + ++ V+ + + + ++ DD + + Sbjct: 614 EIDTVRLNLDNRQRELFEGFVNKVFQLKDADGNVSYSKNGFALDDFDGTPDYVQVGDVVE 673 Query: 691 PTLRADKPLVGTGMERAVAV-------DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 + + E + V D G V D S + +D + Sbjct: 674 QIVSDYISYLTADEEDSFKVAPASTELDENNRFKGDMDGYVIVRDKSEYPHLMKQDSIAI 733 Query: 744 GEAGIDIYNL----------------TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 G+ + +L + N + P+ R + G Sbjct: 734 GDTETERIDLMDVAPMQIVSVAAGLIPFLEHDDANRALMGSNMQRQAVPLLRAEAPVVGT 793 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 + AL V F D+ ++ + + + L P Sbjct: 794 GLER-RAALDSGTVVRAKHDGKVTFVDARNITVQRGKMVNGVFEPLTGLGENYEFLGKDP 852 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 + S +++ IV +G V GD+L V+ +L + +L Sbjct: 853 IDEYTLRKFERSNQDSCINQKPIVNVGDFVEVGDVLADGVS-TDHGELALGKNILIGFLP 911 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----EE 963 + +D+ + +S + FT +E+ + + + ++ +++ + Sbjct: 912 WNGYNYEDAVI-----ISEELAIKDTFTSIHIEEYEMEVRDTKRGPEELTREIPNVGEDA 966 Query: 964 LQILEAGLFSRIR------AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 L+ L+ R+ +LV + + P +R L ++ + L Sbjct: 967 LRNLDENGVIRVGAEVGPDDILVGKVTPKGETELTPEERLLRAIFGEKAGDVRDSSLKAP 1026 Query: 1018 YDELKHEFEKKLEA 1031 E ++ + Sbjct: 1027 PGMKGVVLETRIFS 1040 >UniRef50_C4Y3J9 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y3J9_CLAL4 Length = 1232 Score = 621 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 194/1288 (15%), Positives = 363/1288 (28%), Gaps = 290/1288 (22%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL-DFEFDPKDNLFVRIDR- 200 RV QL R P V + R+ YRG L + D V R Sbjct: 143 RVDSVQLAR-PSVPPTDKLSVNRKTFPSECRERMSTYRGKLLMKVVWSVNDGEEVSEVRD 201 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDIEA 257 ++P + + +L +K + + + + +R + + + Sbjct: 202 GGQVPIMLKSNRCHLEKLSPDELVAQKEESDELGGYFIVNGIEKLVRMLIVQRRNHPMAL 261 Query: 258 NGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + +G T IR + D V G V + ++ + + Sbjct: 262 IRPSFGNRGASYTKFGVQIRCVRPDQTSQTNVLHYLKDGNVTFRFSWRKNEYLVPVVMVL 321 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + ++ + G +T + D + T + + + S L + R Sbjct: 322 KALVETNDREIFDGIVAADTSNSFLTDRLELLLRTYKQYNLHSQKSTLAYLGDKFRVAFG 381 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 T + ++ VGR R +L ++ ++KL + Sbjct: 382 ATPDVSDI---------------DVGREVLKRIVLVHLP--DNADKFRLLLFSIRKLYTL 424 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL----------GDLD 485 G D+ D ++ + G + + + + +K ++S D Sbjct: 425 VAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKMQISSDIGRGVRVNFNDRK 484 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRIS 531 + M + I ++ F + L + ++ N I+H R + Sbjct: 485 YMSRVFMRTNENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMV- 543 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 G E VR + P +G +CP+ TP+G GL+N L+ Q + Sbjct: 544 --HRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCQIATKASDVSAV 601 Query: 592 RKVTDGVVTDEIHY------LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 + H L + ++ ++ ++ + L + +G +L Sbjct: 602 PAALARLGVSPAHTFAAGPGLCCVHLDGKIVGW--TSHEQGRIVADSLRLWKVQGLHNLP 659 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 ++ Y+ L F H M R A + ++G Sbjct: 660 KDLEIGYV---PPSSKGQYPGLYLFGGHSR---------MMRPAKYLPLDKEDILG---- 703 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 + + P E +++ ++ +N + Sbjct: 704 -------------------PF------EQVYMNIAVTPAEIEENVHTHVEFAPTNILS-- 736 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 + P++ +N + ++ ++ Sbjct: 737 ----------------------------------ILANLTPFSDFNQSPRNMYQCQMGKQ 762 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 T ++ +L T P V Sbjct: 763 TMGTPGVALVHRSDNKLYRLQ----TGQTPIVKANLYDDYGMDNFP-------------- 804 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 + A+ D+ D+ + + E+ Sbjct: 805 -----------NGMNAVVAVISYTGYDMDDA---------------MIINKSADERGFGY 838 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + +++ I + F + +KL D +G+ E Sbjct: 839 GTVYKVEKVDLSLSRRRGDPITQHFGFG-------SDEWPETWKEKLDDDGLPLIGVKVE 891 Query: 1006 EKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 E + E + K + DD + + + V R G Sbjct: 892 EGDPIVAYFDETLGKTKIKTYHSSEPAYIEEVKLLADDTGDSECQQITIKYRVTRAPLIG 951 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DK + RHG KGV S+ P DMPY E+G D+++NP PSR Sbjct: 952 DKFSSRHGQKGVCSRKWPTVDMPYSESGIQPDVIINPHAFPSR---------------MT 996 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 IG + ++ A GA D + + E Sbjct: 997 IGMFVESL----------------AGKAGALHGIAQDSTPWKFSE--------------- 1025 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 D E LKL G +Y G TGE+ + +G +Y +L H+V+DK Sbjct: 1026 ----DDTPADFFGEQLKLAGYNYHGNEPMYSGVTGEELRADIYIGVVYYQRLRHMVNDKF 1081 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VN 1299 RSTG + +T QP+ G+ + GG R GEME AL +G AY LQ+ L SD + Sbjct: 1082 QVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTAYLLQDRLLNSSDYAQTPIC 1141 Query: 1300 GRTKM------------------YKNI----------------------------VDGNH 1313 ++ V G Sbjct: 1142 RSCGSLLNTQMSVPRIGSLASVKCRSCADKLETYIKKGEYVNEADIWEDGSGTKFVGGAD 1201 Query: 1314 QMEPGMPESFNVLLKEIRSLGINIELED 1341 +P L E+ ++GI + Sbjct: 1202 TTTVAIPFVLKYLDSELTAMGIKMRYNV 1229 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 43/308 (13%), Positives = 91/308 (29%), Gaps = 69/308 (22%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKF-------IEQDPEGQYGLE 50 M + +R ++ P L ++ + SF + G + Sbjct: 66 MGAQFRTLEREKRFQNPPKDKSAYPLLADAVAPHVGSFNALTEGADGGLLNLAVKDIGTK 125 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLRV 98 F S + + +++ S +L P EC+ R TY L + Sbjct: 126 TIFDSNDETRLGNK-LKIRVDSVQLARPSVPPTDKLSVNRKTFPSECRERMSTYRGKLLM 184 Query: 99 KLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN------------------------G 134 K+ + + E G++P+M + G Sbjct: 185 KVVWSVNDGEEVSEVRDG--------GQVPIMLKSNRCHLEKLSPDELVAQKEESDELGG 236 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FE 187 F++NG E+++ + + + + + Y + R D Sbjct: 237 YFIVNGIEKLVRMLIVQRRNH-PMALIRPSFGNRGASYTKFGVQIRCVRPDQTSQTNVLH 295 Query: 188 FDPKDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + N+ R R+ +P ++L+AL T + F+ ++ N + + Sbjct: 296 YLKDGNVTFRFSWRKNEYLVPVVMVLKALVETND---REIFDGIVAADTSNSFLTDRLEL 352 Query: 245 RLRGETAS 252 LR Sbjct: 353 LLRTYKQY 360 >UniRef50_A8P4S3 DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide, putative n=3 Tax=Fungi/Metazoa group RepID=A8P4S3_BRUMA Length = 1104 Score = 621 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 184/1260 (14%), Positives = 366/1260 (29%), Gaps = 247/1260 (19%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F ++ K + + + + +LD + Sbjct: 26 RGLVKQHIASYDYFVSTEIKKILRANDKITSDANPSFYLKYLDIHVGMPSSEEGFNQIND 85 Query: 203 KL-PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR-------------- 247 K+ P LR + Y+ +D+ + + + N L + +P LR Sbjct: 86 KISPHECRLRDMTYSAPISVDIEYTRGSQRVLRNGLIIGKMPVMLRSSKCVLKNMNESEL 145 Query: 248 --------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 F I + KV + + + R + +L + + Sbjct: 146 ARVQECPYDPGGYFIIRGSEKVVLIQEQLSKNRIMIG-RNSKKELQCEILSSTQERKSKT 204 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRV 353 + + + + + G + + + ++ E Sbjct: 205 YIASKKQRYYVRHNQLSDDVPIAIIFKAMGFESDHDIVSAVGLEEKFVAAMAPSIEECAS 264 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 + AL I ++ + + S + A+ + Sbjct: 265 HQIVTQEGALQYIASKVKIRKFGPATSGTSTLPR--------EHEAIDFLSNLMIAHVPC 316 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 +G+ + + ++++L+ G E DD D GN+R+ G + F R Sbjct: 317 PDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFYGNKRLELAGSLLALLFEDVFKRFNS 376 Query: 474 AVKE----RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEITH 526 +K L L + I+ A+ + + + M++ ++ Sbjct: 377 ELKRIADNSLGKTLAAPLDIVKHVRQDLITNALVDALATGNWTIKRFKMERQGVTQVLSR 436 Query: 527 KRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 IS LG + R R + P+ +G +CP +TPEG + GL+ +L++ + Sbjct: 437 LSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALLSHI 496 Query: 582 NEYGFLETPYRKVTDGVVTDEIH--YLSAIEEGNYVIAQANSNL----DEEGHFVEDLVT 635 E P ++ +++ + SAI Y I N + + V + Sbjct: 497 TTD-SDEKPVIRLLYNAGVEDVKSLHFSAIHNPAYHIVFLNGVIVGLTIDPQRIVSTIRA 555 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 R G + F + S + S G L + + + R Sbjct: 556 VRRHGLLNEFVSVSTNAAQRS-VYIASDGGRLCRPYIIVKNSIPQVTQEHIEELKKGYRI 614 Query: 696 DKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 + V G+ + V+ + I V E+++ P Sbjct: 615 FEDFVDDGLIEYLDVNEM----------------NDASIAVYENQIKP------------ 646 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 L P T LG + +P+ +N Sbjct: 647 -----------------------TTTHLEIEPFTLLG-------VCAGLIPYPHHNQSPR 676 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGA 875 + ++ T R L + P V + + + Sbjct: 677 NTYQCAMGKQAMGTI----GYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCNFEKLPA--- 729 Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 935 + + A+ D++D+ + + V+ Sbjct: 730 ----------------------GQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYK 767 Query: 936 RDGVEKDKRALEI----EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 K + ++ A + + Q+L+ + A + + V K Sbjct: 768 HAKATARKYPNQTFDRLMGPTIEAATRKPIYKHQVLDQEGIVYVGACIRSKQVMINKHMP 827 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 + +++ + N +Y ++ + + + ++ +VK Sbjct: 828 V-VSMEAGATVSNNDGTNIGGSHEVEYKDVSVVYRNPVPSYAERVL--LTYNEDDAHLVK 884 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 EDMP+++ G D+++NP G PSRM +G+ Sbjct: 885 -------------------------------EDMPFNDLGMCPDMIMNPHGYPSRMTVGK 913 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 ++E G A G +V + E + T Sbjct: 914 LMELLSGKNAVLSGKFHYGTAFGGDQVDIVCEELAARGFNYLGKDMLTSGIT-------- 965 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + L G +Y Sbjct: 966 ------------------------GQQLSAYIY----------------------FGPIY 979 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 KL H+V DKMHAR+ G +++T+QP G+A+ GG R GEME L AYGA+ L E L Sbjct: 980 YQKLKHMVLDKMHARARGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGASMLLMERL 1039 Query: 1292 TVKSD----DVNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 V SD DV + + +P + +L +E++S+ I ++ Sbjct: 1040 MVSSDEFKVDVCSQCGLIGYKSWCQMCRSSRTMATIKIPYACKLLFQELQSMNIVPKISL 1099 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 95/268 (35%), Gaps = 56/268 (20%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M E + I+ + P L V L+ + S+ F+ + ++ R+ I Sbjct: 2 MEKITGEVQTIKDKWTLVPAFLQVRGLVKQHIASYDYFVSTE------IKKILRANDKIT 55 Query: 61 -SYSGNSELQYVSYRLGEP-----------VFDVQECQIRGVTYSAPLRVKLRLVIYERE 108 + + L+Y+ +G P EC++R +TYSAP+ V + Sbjct: 56 SDANPSFYLKYLDIHVGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYT----- 110 Query: 109 APEGTVKDIKEQEVYMGEIPLM------------------------TDNGTFVINGTERV 144 + + + +G++P+M G F+I G+E+V Sbjct: 111 ---RGSQRVLRNGLIIGKMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKV 167 Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR-K 203 ++ Q S K ++L + + + + K +VR ++ Sbjct: 168 VLIQEQLSKNRIMIGRNSKKELQCEILSSTQERKSK----TYIASKKQRYYVRHNQLSDD 223 Query: 204 LPATIILRALNY-TTEQILDLFFEKVIF 230 +P II +A+ + + I+ + F Sbjct: 224 VPIAIIFKAMGFESDHDIVSAVGLEEKF 251 >UniRef50_B2W234 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W234_PYRTR Length = 1167 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 188/1257 (14%), Positives = 370/1257 (29%), Gaps = 260/1257 (20%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF---VR 197 + +V Q S F D + K + + + + + D + + Sbjct: 109 KTKGLVKQHVDSYNHFVDVELKKIIKVNRFVRSDFDPKFLLEYTDIRVLAPNRQEEDDLD 168 Query: 198 IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR---------- 247 + P LR + Y ++D+ + + +++ +++ +P L+ Sbjct: 169 HHKSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKRTGIKIGRMPIMLKSNKCVLAGKN 228 Query: 248 ------------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 F KV + + + R I + K +++ V + Sbjct: 229 DNDMAVMGECPLDPGGYFITRGQEKVILVQEQLNKNRVIVESAK---GIMQASVTSSTHE 285 Query: 296 VVAKDYIDESTGELICAANME-LSLDLLAKLSQSGHKRIETLFT-------NDLDHGPYI 347 K Y+ + G + N + ++ + G + + T D+ Sbjct: 286 RRTKTYVIQKKGLMYLRHNTLSEEIPIVFVMKALGVASDKEILTMVAGEDSAYQDNFSIN 345 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 E + + AL I +R + P + Y L A+ + Sbjct: 346 FEACAKEEIFTQERALEYIGHRVRLVKKPLGTSR----------NRNYHLEAIECLSNVV 395 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 + + + ++++ VDD D++GN+R+ G+M F Sbjct: 396 LPHVPVEGTNYRPKALYVALMARRVLMAMQNPKLVDDRDYVGNKRLELSGQMLSLLFEDH 455 Query: 468 LVRVE--------RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS---QFMD 516 R + +K+ + + D ++ I+ V+ + S MD Sbjct: 456 FKRFNHDFKLSIDKVLKKPVRAQEFDAFSHFS-VHKNHITMGVERAIATGNWSLKRFKMD 514 Query: 517 QNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 + ++ I+ALG + R R + P+ +G +C +TPEG GL Sbjct: 515 RAGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGL 574 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE------GNYVIAQANSNLDE 625 + +L++ + P RK+ + +I L+ + + + D Sbjct: 575 VKNLALMTHITTEDDDD-PVRKIVFMLGAQDICSLTGEDIHAEGVYSLCLNGTPIAVTDR 633 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 HF+ R G S F+ +D+ D + + + + + R+ + + Sbjct: 634 PKHFLNSFRGLRRMGRVSEFTSIHIDH-DHCEVHIATDEGRICRPMIIVENQRSKVTSRY 692 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 + + + G+V+Y+D + + + E Sbjct: 693 LKALRKGTLDFEDFLTR-------------------GLVEYLDTNEEN----DTNIALKE 729 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 I+ + L P T LG + Sbjct: 730 TDINQHT----------------------------THLEIEPFTILG-------AVAGLI 754 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 P+ +N + L + P V + Sbjct: 755 PYPHHNQSPRNTYQCAM--------------------DTLLYLMVYPQQPMVKTRTIELT 794 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 + + A+ D++D+ + Sbjct: 795 KYDKLPA-------------------------GQNATVAVMSYSGYDIEDALILNKASCD 829 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 QV + + A + A ++ Q + +++ A + AG Sbjct: 830 RGFGRCQVMKKHVTQLKTYANGTSDRINAGALDPDNKNHQAIGKDGIAQVGARIEAGDAY 889 Query: 986 AEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPG 1045 K + D+ E + K Sbjct: 890 LLKSIPVDTAGPPSNTYKDKP-------------EKYKNPDYSYIDKTCV-----TENEA 931 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 + ++K+ RR + GDK + RHG KG I EDMP+++ G DI++NP G PS Sbjct: 932 GVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPFNDQGICPDIIMNPHGFPS 991 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 RM +G+++E G A G V + + + Sbjct: 992 RMTVGKMMELLSGKAGVLNGTLEYGTAFGGSTVEDMSKILVDKGFSYTGKDYLT------ 1045 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 G+ F Sbjct: 1046 ------------SGITGEAHQF------------------------------------YT 1057 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 G +Y KL H+V DKMH+R+ G +++T+QP G+A+ GG R GEME L AYG Sbjct: 1058 FFGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGGQM 1117 Query: 1286 TLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G + K + MP + +L++E+ S+ I + + E Sbjct: 1118 --------------GYSGYCKLCESEKAVRKITMPYAAKLLIQELGSMNIKVTIGLE 1160 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 96/304 (31%), Gaps = 45/304 (14%) Query: 5 YTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG 64 R + P L L+ +DS+ F++ + + + RS + Sbjct: 91 TDPINTARDKWNLLPAFLKTKGLVKQHVDSYNHFVDVELKKIIKVNRFVRS-----DFDP 145 Query: 65 NSELQYVSYRLGEP-------------VFDVQECQIRGVTYSAPLRVKL----------- 100 L+Y R+ P EC++R +TY+AP+ V + Sbjct: 146 KFLLEYTDIRVLAPNRQEEDDLDHHKSTVTPNECRLRDMTYAAPIVVDIIYTRGNAKVKR 205 Query: 101 ------RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPG 154 R+ I + MGE PL G F+ G E+VI+ Q + Sbjct: 206 TGIKIGRMPIMLKSNKCVLAGKNDNDMAVMGECPL-DPGGYFITRGQEKVILVQEQLNKN 264 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRAL 213 + + + + K +++R + ++P +++AL Sbjct: 265 RVIVESAKGIMQA-----SVTSSTHERRTKTYVIQKKGLMYLRHNTLSEEIPIVFVMKAL 319 Query: 214 NY-TTEQILDLFFEKVIFEIRDNKLQMELV--PERLRGETASFDIEANGKVYVEKGRRIT 270 + ++IL + + + + E E E A I ++ + Sbjct: 320 GVASDKEILTMVAGEDSAYQDNFSINFEACAKEEIFTQERALEYIGHRVRLVKKPLGTSR 379 Query: 271 ARHI 274 R+ Sbjct: 380 NRNY 383 >UniRef50_Q5CPZ8 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium RepID=Q5CPZ8_CRYPV Length = 1287 Score = 619 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 186/1310 (14%), Positives = 370/1310 (28%), Gaps = 281/1310 (21%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 R+I S + S + F + + + + P D + + V R Sbjct: 147 ANRMIRSDVDPSFFIEFLDARVGMPKLEENMITVDLTPMMCRMRDITYAAPIFVDVDYVR 206 Query: 201 R-----------RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGE 249 ++P + + + ++ Sbjct: 207 GNTVVRKKNVEIGRIPVMLRSKVCILHGKTAAEMVKLNE----------------CPHDP 250 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 F ++ K + + + R I +L+ V + ++ + G+L Sbjct: 251 GGYFVVKGTEKAILMQEQLSKNRIIVELDNKHN--YCATVTSTTAESKSRTLVVFKNGKL 308 Query: 310 ICAANMELS-LDLLAKLSQSGHKRIETLFTNDLD---HGPYISETLRV---DPTNDRLSA 362 N + L L G + + +F + H I +L+ + + A Sbjct: 309 YLRHNSFSDEIPLCIVLKAMGIETEQEIFFMIGNEPHHQEGIINSLQEVHQEGIFTQRQA 368 Query: 363 LVEIYRMMRPGEPPTREAAESL-FENLFFSEDRYDLSAVGRMK--------------FNR 407 L+ + + + T ++ N S + + G K NR Sbjct: 369 LLFMSKKAKSKFKSTFGSSRGFDKSNAEESAENSGFTEFGGSKSSLCGTSIDDVLETLNR 428 Query: 408 SLLREEIE--GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFR 465 LL + + K+++D +DD D+ GN+RI G++ F Sbjct: 429 VLLSHIGTIYTDLHPKALFLCLMAKRVLDASEDNSLLDDKDYYGNKRIELAGQLISILFE 488 Query: 466 VGLVRVERAVKERLSLGDLDTLMPQDMIN--------------------AKPISAAVKEF 505 R K+++ + +D I+ ++ Sbjct: 489 DLFKRFSVLTKKQIDQTLIRYFQTRDASKAGTGRDDSNSTYPDCFRNLPTDIITRGMQTA 548 Query: 506 FGSSQLSQF---MDQNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGR 557 + S M+++ +T I++LG + R R + P+ +G Sbjct: 549 LSTGNWSIKRFRMERSGMTQVLTRFSYIASLGIMTRVDSQFEKARKVSGPRALQPSQWGI 608 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG----- 612 +CP +TPEG + GL+ +L++ + + + +I S ++ Sbjct: 609 LCPCDTPEGESCGLVKNLALTTHITTDHCPQ-YLTSLLFTLGVQDISSCSYLDFNTKQSE 667 Query: 613 ------------------NYVIAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQV 650 + N +L L R KG F Sbjct: 668 KLSNEDLKNESSGKNNVKKHYYVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVSIFC 727 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +++ S+ Q+ + G L L D + Q + G+ + V Sbjct: 728 NHIH-SSVQIATDGGRLCRPLIIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDV 786 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 + + L +N+ T + P Sbjct: 787 NEENNLL---------------------------------IALRDENLTNETTHLEIDPL 813 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 LG + +P+ +N + ++ + Sbjct: 814 SILG-------------------------VVSGLIPYPNHNQSPRNTYQCAMGKQVMGSV 848 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 R + + P + ++ + Sbjct: 849 ----GFNQFLRCDSVLYLLVYPQKPLCKTRTIEMINFEQLPA------------------ 886 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 + A+ D++D+ + V V R +E K + E Sbjct: 887 -------GQNSSVAVMSFAGYDIEDAIVMNKASVDRGFARCFVMKRQTIELQKLPNGLSE 939 Query: 951 MQLK---------QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 ++ ++ + IL+ + + + K+ + + Sbjct: 940 RVVRPISVGSGNTGNRRFSFKNDSILDNDGVCNVGVQVSEDDIIVNKMSPINTREY---- 995 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 + + + D +I KV RR + Sbjct: 996 --VGDPSQFDLSEYKPSPVKYKGPTSSYIDRVILTENAD-----GNQIYKVITRQTRRPE 1048 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK + RHG KGV+ I ED+P+ E G D+++NP G PSRM +G++LE A+ Sbjct: 1049 LGDKFSSRHGQKGVVGLIISQEDLPFSETGWCPDLIMNPHGFPSRMTVGKLLELISSKAS 1108 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G+ + + + + + + G Sbjct: 1109 VLDGNYRYGTAFGGTPLEESAKCLVEHGFHYSGKEYLTSGT---------------TGEA 1153 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 I +F G +Y KL H+V D Sbjct: 1154 IEAYIFVG---------------------------------------PIYYQKLKHMVLD 1174 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----D 1297 KMHAR G ++T+QP G+++ GG R GEME L AYGA+ L E L + SD + Sbjct: 1175 KMHARGRGPRQILTRQPTEGRSKDGGLRLGEMERDCLVAYGASNLLIERLMLNSDVFETN 1234 Query: 1298 VNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 V + +P + +L +E++++ + + Sbjct: 1235 VCNQCGLFGYNNYCHYCKSSQDVSIIRLPYACKLLFQELQAMNVCPRIRT 1284 Score = 336 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 145/1093 (13%), Positives = 318/1093 (29%), Gaps = 190/1093 (17%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYG--LEAAFRSVFPIQSYS 63 ++ + P L L+ +DS+ F+ + + RS Sbjct: 102 KPVNTMKDKWRLLPYFLKTEGLVKHHIDSYNYFVTTEIQSIVRANANRMIRS-----DVD 156 Query: 64 GNSELQYVSYRLGEPV---------FDVQECQIRGVTYSAPLRVKL-------------- 100 + ++++ R+G P C++R +TY+AP+ V + Sbjct: 157 PSFFIEFLDARVGMPKLEENMITVDLTPMMCRMRDITYAAPIFVDVDYVRGNTVVRKKNV 216 Query: 101 ---RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF 157 R+ + R + V + E P G FV+ GTE+ I+ Q S Sbjct: 217 EIGRIPVMLRSKVCILHGKTAAEMVKLNECPH-DPGGYFVVKGTEKAILMQEQLSKNRII 275 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR-IDRRRKLPATIILRALNYT 216 K + V L++R ++P I+L+A+ Sbjct: 276 VELDNKHNYCATVTST----TAESKSRTLVVFKNGKLYLRHNSFSDEIPLCIVLKAMGIE 331 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ 276 TEQ + F ++ + + E ++ ++ + + Sbjct: 332 TEQEI-FFMIGNEPHHQEG--IINSLQEV-----------HQEGIFTQRQALLFMSKKAK 377 Query: 277 LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL 336 + + + A++ G + D+L L++ I T+ Sbjct: 378 SKFKSTFGSSRGFDKSNAEESAENSGFTEFGGSKSSLCGTSIDDVLETLNRVLLSHIGTI 437 Query: 337 FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYD 396 +T+ ++ + ++L++ + ++ R + Sbjct: 438 YTDLHPKALFLCLMAKRVLDASEDNSLLD--------------------DKDYYGNKRIE 477 Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD----IDHLGNRR 452 L+ L + + +I + + G G D D N Sbjct: 478 LAGQLISILFEDLFKRFSVLTKKQIDQTLIRYFQTRDASKAGTGRDDSNSTYPDCFRN-- 535 Query: 453 IRSVGEMAENQFRVGLVRVERAVKE-RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL 511 ++ + L ++K R+ ++ + F Sbjct: 536 --LPTDIITRGMQTALSTGNWSIKRFRMER--------------SGMTQVLTRF------ 573 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 + ++ + R+ + + R R + P+ +G +CP +TPEG + GL Sbjct: 574 -------SYIASLGIMTRVDS----QFEKARKVSGPRALQPSQWGILCPCDTPEGESCGL 622 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG------------------- 612 + +L++ + + + +I S ++ Sbjct: 623 VKNLALTTHITTDHCPQ-YLTSLLFTLGVQDISSCSYLDFNTKQSEKLSNEDLKNESSGK 681 Query: 613 ----NYVIAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 + N +L L R KG F +++ S+ Q+ + G Sbjct: 682 NNVKKHYYVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVSIFCNHIH-SSVQIATDG 740 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT--------- 715 L L D + Q + G+ + V+ Sbjct: 741 GRLCRPLIIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDVNEENNLLIALRDEN 800 Query: 716 --------------AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 + G++ Y + ++ + M G ++ R + Sbjct: 801 LTNETTHLEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGSVG--FNQFLRCDS 858 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 + P +P+ + + + +L GQN VA M + GY+ ED+I++++ Sbjct: 859 VLYLLVYPQ----KPLCKTRTIE---MINFEQLPAGQNSSVAVMSFAGYDIEDAIVMNKA 911 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK----------LDESGIV 871 V ++ + G E +VG LD G+ Sbjct: 912 SVDRGFARCFVMKRQTIELQKLPNGLSERVVRPISVGSGNTGNRRFSFKNDSILDNDGVC 971 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 +G +V+ DI+V K++P + + S+ K S ++ S + V Sbjct: 972 NVGVQVSEDDIIVNKMSPINTREYVGDPS------QFDLSEYKPSPVKYKGPTSSYIDRV 1025 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 + + + + + + + K S Q GL + + L Sbjct: 1026 ILTENADGNQIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSETGWCPDLIM 1085 Query: 992 LPRDRWLELGLTD 1004 P + + Sbjct: 1086 NPHGFPSRMTVGK 1098 >UniRef50_B6KTL0 DNA-directed RNA polymerase n=4 Tax=Eukaryota RepID=B6KTL0_TOXGO Length = 1388 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 206/1431 (14%), Positives = 400/1431 (27%), Gaps = 250/1431 (17%) Query: 30 IQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRG 89 + SF F+E L+ + + +P +D + Sbjct: 62 PHVRSFDSFLE------VYLQEMVKDLP---------------VVYVDPSYDPDK-HEAN 99 Query: 90 VTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQL 149 YS +KL + ++ + + G +++++ + Sbjct: 100 PFYSPTDYIKLAI-------SSVSIGAPVRFDAAGARLQPGVGGS-----GDDQLLLPKH 147 Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATII 209 R + + + + R D K+ + P + Sbjct: 148 CREAHITYGAPLKVSF-------------VRSDRRDGAALKKEVVV------GMAPLMVR 188 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDIEANGKVYVEKG 266 + + +L + + +R + +F I + + Sbjct: 189 SKLCSTRGMSPAELQRAGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALKRPAFANRD 248 Query: 267 RRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL--ICAANMELSLDLL 322 T A +R D + ++ G+ + ++ L Sbjct: 249 AFCTPYAVLLRSQRYDGTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLRCLAGNLSL 308 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAE 382 A+L + + + E + T L P + Sbjct: 309 AQLKAKLLEGCWDDAADATARSQLVEELWGQEATFADSDVLE--------NRPLHQLGLL 360 Query: 383 SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 + A G +L S D + + KKL ++ GK Sbjct: 361 FWKAVHWLLRPGSSYEAAGTYVIRHFVLPHLSSWSE--KFDMALLMYKKLRLLKQGKISA 418 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK----ERLSLGDLDTLMPQDMINAKP- 497 + +D + + G++ + + L ++ + + + P I + Sbjct: 419 ESLDSFAYQEVVLPGQILASVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKF 478 Query: 498 -----------ISAAVKEFFGSSQ-------------LSQFMDQNNPLSEITHKRRISAL 533 I+ + F + + D+ N ++H R A+ Sbjct: 479 FDLATDRCCPEIAQKLSYFMATGNIRTTQLDLQQLSGWTVTADRLNVHRFLSHFR---AV 535 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLE---TP 590 G VR + +G +CP+ TP+G GL+ L+ A Sbjct: 536 HRGQFFTTMKTTSVRKLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARAS 595 Query: 591 YRKVTDGVVT----DEIHYLSAIE----------------------------EGNYVIAQ 618 R + L + V Sbjct: 596 IRLFLHKHGVCVDLEGTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFPLVVDGA 655 Query: 619 ANSNLD--EEGHFVEDLVTCR-SKGESSLFSRDQVDYMDVST----QQVVSVGASLIPFL 671 LD + ++E + + E + V + + + L+ + Sbjct: 656 VVCRLDRKDFAFWLETFRDLKSREAEDFKQHWEVVGFPHNGGNLESIFIFTFPGRLVRPV 715 Query: 672 EHDDANRALMGANMQRQ-------AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 H ++ R + + R+D+ L G + V S V+ + Sbjct: 716 RHIESGRIEYIGPLMQPWAAIACRPSDVKRSDRLLRLHGPVVSEIVSSSVSTDSLASRFQ 775 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 S + +E+ GE G + ++ P ++ E + + Sbjct: 776 ALSVDSASQERHSEETGETGETGETGESGKRF------------PLIAANEASGTDALFS 823 Query: 785 DGPSTDLGELALGQNMRVAF----MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 + L + ++ P++ +N + +++++ T H + Sbjct: 824 FSAPVKYEYVELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFH----SIPF 879 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 R IT P V + D Sbjct: 880 RHDNKAYRLITPQRPLVRTEDYRRFDFD-------------------------DYPSGVN 914 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK-- 958 + A+ D++D+ + + V+ ++ + Sbjct: 915 AVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVIDAAPASARAGAASQYTFGNVN 974 Query: 959 -DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 + + L+ F I A + G + G+ Q A + Sbjct: 975 EFGRKHIATLDGDGFPAIGAKIEKGNTYCRVQTSSSSSSFASNGI----------QHAYK 1024 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLK--IVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 E + + + LA LK + L R+ GDK A RHG KG+ Sbjct: 1025 DGETAYVDGVTFISPP--DAAHERLAKSGLKGCRASLRLRCVRKPVIGDKFASRHGQKGI 1082 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 +S + P EDMP+ E+G DI+ NP G PSRM IG ++E+ G AA G +A ++ Sbjct: 1083 LSMLWPHEDMPFTESGLVPDILFNPHGFPSRMTIGMLIESMAGKAAAVHGAYQDATPFRE 1142 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 + G K + EE + + Sbjct: 1143 FPPQSADGKNKWVDQGGYHGWVKRGERYRTPEEERQAQDEP------------ETPVDYF 1190 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 + L G LY G G + G +Y +L H+V DK R+TG +T Sbjct: 1191 GKALMRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVRATGPVDALT 1250 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK-MYKNIVDGNHQ 1314 QP+ G+ + GG RFGEME AL ++GAA LQ+ L SD +I+ + Sbjct: 1251 HQPVKGRKRHGGVRFGEMERDALISHGAAALLQDRLLHCSDAHKTFCCPSCGSILTPSAV 1310 Query: 1315 ME------------------------PGMPESFNVLLKEIRSLGINIELED 1341 +P F L E+ ++ + I L+ Sbjct: 1311 PNLRGRTAGGKRAVPFCRVCQVPCRLIMVPYVFRYLANELAAMNVTIRLKL 1361 >UniRef50_Q8SQY8 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi RepID=Q8SQY8_ENCCU Length = 1110 Score = 618 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 189/1279 (14%), Positives = 380/1279 (29%), Gaps = 260/1279 (20%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 E+ +V Q S F D + + +++ + + +LD + Sbjct: 15 NEKGLVRQHIESYDYFVDHEIKALVRANQIVDSDIDHTFYLKYLDIRVAMPSVEE-NMVN 73 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET---------- 250 P LR + Y+ +D+ + + I + + +P LR Sbjct: 74 YNVFPIECRLRDITYSANIYVDIEYVRNRQIIVKRDVCIGKMPVMLRSSRCHLRRETKGP 133 Query: 251 ----------------------ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 F + +V + + + R I + + Sbjct: 134 MEGRKTKDRRIRESQECPLDVGGYFIVRGIERVVLIQEQLSKNRIIIESGPKGL--FASV 191 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI- 347 + + + ++ + G + + I Sbjct: 192 TSSTDEHKSKTSVTTRDDCYYLKNSMFSEEVPVVIMMKALGLVQDREVAECVGKEYFEIM 251 Query: 348 ---SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 R AL+ I ++ ED + + Sbjct: 252 VPSFGECMSKGIFTREQALLYISSYIK-----------------LKPEDNRIEEVLTVLS 294 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 + I ++++L + DD D +GN+R G++ F Sbjct: 295 EKVLPNVQIEGCDLRKKGIYIALMVRRLAQTKLNILREDDKDFVGNKRFELAGQLLSILF 354 Query: 465 RVGLVRVERAVKERL-------SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL---SQF 514 R +K+ + S + + A I++ + + Sbjct: 355 EDTFKRFNFELKKSIDKILSKRSRAQEFDALTFLNLQANMITSTLARAISTGNWNLKRFR 414 Query: 515 MDQNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 M+++ ++ ISALG + R R +H + +G +CP++TPEG + Sbjct: 415 MERSGVTHVLSRHSYISALGMMTKINSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESC 474 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI--AQANSNLDEEG 627 GL+ +L++ A+ P + +I+ + E + N ++ Sbjct: 475 GLVKNLALLAEITTN-SDTKPILDTVYKLGVVDINSVYTREIHQKDMFSVFLNGDIIGIT 533 Query: 628 H----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 + VE R KG F ++ + S + L D NR Sbjct: 534 NRADFLVEQFKLHRRKGLVGKFVSIYKVTVER-VIHIASDNGRVCRPLIIIDKNRI---- 588 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSG-----------VTAVAKRGGVVQYVDASRI 732 Q + + + D+ L + VA++SG G ++Y+D + Sbjct: 589 ---NQTIISNQMDECLKALNISEKVAIESGKSLFDCYLKYKSFTDLLEEGFIEYLDVNEE 645 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + + P + G + L LG Sbjct: 646 NDCLV--ALKPEDIGEET------------------------------THLEISEFAILG 673 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITA 852 +P+ +N + ++ L R + + Sbjct: 674 Y-------VAGLVPFPHHNQSPRNTYQCAMGKQAIGHI----SLNVKKRFDSVILQLTYT 722 Query: 853 DIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD 912 P V L ++ + I + + A+ D Sbjct: 723 HRPMVSTKILDLINYNEIPA-------------------------GQNAMVAVMSYSGYD 757 Query: 913 VKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF 972 ++D+ + V + V+V+ K + + ++ K+ +L+ Sbjct: 758 IEDALVLNKTSVERGLFRVEVYKTTTTLLKKHSNGMSDVLWPNPKES------VLDEDGL 811 Query: 973 SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAK 1032 + ++ G V K+ + + + + L + + Sbjct: 812 GKPGKMVRDGTVYVNKMSPVDGTYKFTGKVHRGDPAYIDKILITKSQDQV---------- 861 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 ++K L R + GDK + RHG KGV+ + EDMP+++ G Sbjct: 862 ----------------LIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGI 905 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLG 1152 DI++NP G PSRM +G+I+E G A G +++ ++ V + E + + Sbjct: 906 VPDIIMNPHGFPSRMTVGKIVELISGKAGVLEGQILDSTAFKENSVEQTCELLIKHGFSY 965 Query: 1153 ADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRL 1212 + + G P+A +F Sbjct: 966 SGKDCFTSGT---------------TGAPLAAYIF------------------------- 985 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 G ++ +L H+V DK+H R+ G +++T+QP G+++ GG + GE Sbjct: 986 --------------FGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGLKLGE 1031 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM---------YKNIVDGNHQMEPGMPESF 1323 ME L YGA+ + E L SD G ++ MP + Sbjct: 1032 MERDCLIGYGASSLITERLMTSSDVFEAYVCRSCGVLAFKGCCVACKGTKPVKVKMPYAC 1091 Query: 1324 NVLLKEIRSLGINIELEDE 1342 +L +E+ S+ I L E Sbjct: 1092 KLLFQELMSMNILPRLHIE 1110 Score = 101 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 50/404 (12%), Positives = 107/404 (26%), Gaps = 78/404 (19%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLG 76 + L+ ++S+ F++ + + S L+Y+ R+ Sbjct: 9 LIKLFFNEKGLVRQHIESYDYFVDHEIKALVRANQIVDS-----DIDHTFYLKYLDIRVA 63 Query: 77 EPV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 P EC++R +TYSA + V + V + I +++V +G++ Sbjct: 64 MPSVEENMVNYNVFPIECRLRDITYSANIYVDIEYV--------RNRQIIVKRDVCIGKM 115 Query: 128 PLMTDN----------------------------------GTFVINGTERVIVSQLHRSP 153 P+M + G F++ G ERV++ Q S Sbjct: 116 PVMLRSSRCHLRRETKGPMEGRKTKDRRIRESQECPLDVGGYFIVRGIERVVLIQEQLSK 175 Query: 154 GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAL 213 K + + ++P I+++AL Sbjct: 176 NRIIIESGPKGLFASVTSSTDEHKSKTSVTTRDDC----YYLKNSMFSEEVPVVIMMKAL 231 Query: 214 NYTTEQILDLFFEKVIFEIR----DNKLQMELVPERLRGETASFDI------EANGKVY- 262 ++ + K FEI + + S I +V Sbjct: 232 GLVQDREVAECVGKEYFEIMVPSFGECMSKGIFTREQALLYISSYIKLKPEDNRIEEVLT 291 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 V + + I + + + + ++ + L Sbjct: 292 VLSEKVLPNVQIEGCDLRKKGIYIALMVRRLAQTKLNILREDDKDFVGNKRFELAGQLLS 351 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 +T + + I + L AL + Sbjct: 352 ILF-------EDTFKRFNFELKKSIDKILSKRSRAQEFDALTFL 388 >UniRef50_A7AM79 DNA-directed RNA polymerase, beta subunit, putative n=1 Tax=Babesia bovis RepID=A7AM79_BABBO Length = 1171 Score = 618 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 199/1391 (14%), Positives = 408/1391 (29%), Gaps = 319/1391 (22%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 I+ + P + + + ++S+ F R + I + N L+ Sbjct: 36 IKDKWKILPCYMGMRGIARQHINSYNNF-------------VLREIKEIVNAPSNKMLK- 81 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLM 130 + I+ ++ +GE P M Sbjct: 82 --------------------------------------SDACKKFYIEFIDINVGE-PTM 102 Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 ++N N ++ QL R + + + ++D E+ Sbjct: 103 SEN-----NNKPILLTPQLCRMRDITYSAPM---------------------YVDVEYYN 136 Query: 191 KDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 + + + +LP + + + DN + E Sbjct: 137 GEGVASKRVEIGRLPVMLRSCVCALSGGMRANG--------NVDNFELSSRLGECPYDPG 188 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 F I+ KV + + + R I + + V K + ++ + Sbjct: 189 GYFIIKGVEKVILMQEQLSKCRVIVETDVKKNICATVTSATAESK-SRTAVVYKNQKLYV 247 Query: 311 CAANMELSLDLLAKLSQSGHKRIETLFTNDLD-----------HGPYISETLRVDPTNDR 359 + + L L G E + E L + N R Sbjct: 248 RHNSFTDDVPLCIILKAMGVTTDEEIAQLIGTAGAREYLPTGGDYILSIEDLYNEGINTR 307 Query: 360 LSALVEIYRMMRPGEPPT--REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 + AL+ + R +RP +++ + + R+ + +R + S Sbjct: 308 MDALLYVGRKVRPRPLAKGFFTSSKERLPKTNQNLIEDTHDILTRVLLSHIPMRNCRDFS 367 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 G + + + ++++ + +GK +DD DH GN+R+ G++ F +K+ Sbjct: 368 GKIKS--LCLMARRVLSVASGKEPMDDKDHYGNKRLELAGQLISILFEDLFKAFLGQLKK 425 Query: 478 RLSLGDLDTLMPQDM---------------INAKPISAAVKEFFGSSQL----------- 511 ++ + I+ ++ + Sbjct: 426 QIDATLTRHYEIVSNCHGGEQAKYPDCLVSLPTDIITRGMQATISTGNWNIKRFRIERSG 485 Query: 512 -SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 SQ + + + +S + + ++ + R + R + P+ G +CP +TPEG + G Sbjct: 486 VSQILSRLSYISCLGMMTKTNS----QFEKGRKVSKPRALQPSQLGLICPCDTPEGESCG 541 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS---AIEEGNYVIAQANSNLDEEG 627 L+ +LS+ G +E ++ + + LS ++ V N + Sbjct: 542 LVKNLSLMNHVTTDGDIER-LVELLYWLGVESADALSARDCFDDDRNVTVFLNGIIIGVH 600 Query: 628 H----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 ++D+V R +G+ S F +Y + S G L L + + L+ Sbjct: 601 QNGKQLIKDVVALRRRGKISAFVSVFENYQQR-EVHISSDGGRLCRPLIVVENGKPLLTP 659 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 + Q V L +G+ + V+ + I + E ++ P Sbjct: 660 KVLSQLVEGQIPLSKLFASGVLEWIDVNEENNTL----------------IVMRESDITP 703 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 + L P + LG + Sbjct: 704 -----------------------------------KTTHLEISPMSMLG-------VVAG 721 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS 863 +P+ +N + ++ +I ++R + + P V A+ Sbjct: 722 LIPFPNHNQSPRNTYQCAMGKQ----SIGSIGYNQLNRCDTILHLMVYPQRPLVTTKAIQ 777 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 ++ + + ++ A+ + +++D+ + Sbjct: 778 LVNFDKLPA-------------------------GQNVIVAVMSYQGYEIEDAVVINKAS 812 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 R VE +K E +I V Sbjct: 813 SERGFSRCYSLRRVTVEIEKLNHAAERP---------------GGLNNRPQITNVTPVDD 857 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 + D + +G ++ L++L + + K + + Sbjct: 858 LT--------GDSVIGVGQKVKKDDTLLKKLTQTSTGQIKVTDIKYQFNQPAYVDRVMCI 909 Query: 1044 PGVLKIV--KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 + + V K+ L R + GDK + Sbjct: 910 TTIAESVMYKIMLRQVRLPEIGDKYS---------------------------------- 935 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 SR G K L + QE E + + Sbjct: 936 ---SR-----------------HGQKGVVGLIESQENLPFSEHGWVPDLIMNPHGFPSRM 975 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 + E++ + G+ F+ I+ L +G+ LY G TGE Sbjct: 976 TVGKMLELVAAKAAVLNGIFEDGTPFEADSLPAIERSLIKKGFHPAGKEILYSGITGEPL 1035 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 E + G MY KL H+V DK+HAR+ G +T+QP G+++ GG R GEME L AY Sbjct: 1036 ETLIFTGPMYYQKLKHMVSDKIHARAVGPRQSLTRQPTEGRSKDGGLRLGEMERDCLIAY 1095 Query: 1282 GAAYTLQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 GA+ L E L + SD DV + +P + +L +E++ Sbjct: 1096 GASGLLVERLMLSSDVFQMDVCHQCGFIGYDGWCAYCKQRGQTATVAIPYACKLLFQELQ 1155 Query: 1332 SLGINIELEDE 1342 ++ I + + Sbjct: 1156 AMNIRPNVILK 1166 >UniRef50_P36440 DNA-directed RNA polymerase subunit beta n=3 Tax=Heterosigma RepID=RPOB_HETCA Length = 1116 Score = 617 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 300/1143 (26%), Positives = 476/1143 (41%), Gaps = 192/1143 (16%) Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 I L A + +K E K+ + +P L T SF + Y + Sbjct: 77 VRIFLPAEVIYCDTESKYPTKKNRLEDIKEKVFIGQIP--LMTSTGSFIVNGCEG-YRNQ 133 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 R + + ++ + V IA + + + G + E + + L Sbjct: 134 IIRCPGLYYKAEFLNNNIVSTVT--IIAQRGSWLKFEFDKNGY-WVRIDKEKKISIFDFL 190 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 E L I+ L+ T EI + + Sbjct: 191 EGLNINDEEILSGL-----KSIAPLLKYKKTQ-------EILKR-------NNDPDLKNL 231 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 + Y L +GR+ NR L L+ DI ++ + R+ DDI Sbjct: 232 IEKITDPNSYSLGIIGRLNLNRRLGLNISTRVHTLTIHDIFGIIDFFLSARS--FVPDDI 289 Query: 446 DHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEF 505 D L NRRIR+VGE+ +Q +GL R+ER + ER + ++P+ ++NA+PI +A++EF Sbjct: 290 DDLRNRRIRAVGELITSQCEIGLNRLERNILERTNFSGSVRILPKTLVNARPIMSAIQEF 349 Query: 506 FGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 F SSQLS +MDQ N LSE +KRRISALGPGGL +R RD+HPT YGR+CPIETPE Sbjct: 350 FNSSQLSHYMDQTNLLSETANKRRISALGPGGLNADRVTVAARDIHPTQYGRLCPIETPE 409 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 G N+GL+++L+ YA+ N GF++TPY +V E ++ Q Sbjct: 410 GQNVGLVSTLASYARINRNGFIQTPYFRV----------------ENGKILTQ------- 446 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 + L+ + + + ++ V + Sbjct: 447 -----QPLIYL----------TAEQENLKIAPADVKRDQDGYLVDDFIVTR--------- 482 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 ++ ++ S + ++ ++ +++ + M Sbjct: 483 -------FQSKNFIITPSKLVDFISVSEIQIISVAASLIPFLEHDDANRALMGANMQRQA 535 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 + P V G + VAF Sbjct: 536 VP---------------LLYPRKPIVGTGIESQ-----------------------VAF- 556 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 DS LV+ + ++ + G + I + L Sbjct: 557 --------DSRLVN---IATKPGIVKYVSSQQIDIK-NIEGEKIAYKLIKYRPSNQDTCL 604 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 ++ +V++G + G + + +L + L A + + +D+ L VS Sbjct: 605 NQRPLVWVGQSIKTGQV-IADGPGTQSGELALGQNLTVAYMPWQGYNYEDAIL-----VS 658 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----------EELQILEAGLFSRI 975 + +FT +E+ + ++ + + D+ +E I++ G + Sbjct: 659 DKLDIQNLFTSIHIEECETEVQQTKTGEQVITSDIPLVSEKNCKNLDENGIIKVGKYVYP 718 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 +LV ++D+LP + L+ + + L + K+ K + Sbjct: 719 GDILVGKITPKGEIDQLPEAKLLKAIFGFKTPDMRDSSLRVPGGLSGRVLDIKIFKKPKP 778 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 GV ++V++A ++Q GDK+AGRHGNKGVIS+I P +DMP+ +GT VD Sbjct: 779 GKV-----FGVGSKIRVFIAQISKLQVGDKIAGRHGNKGVISRILPHQDMPFLPDGTSVD 833 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 I+LNPLGVPSRMN+GQI E LG+A + + + + + + A Sbjct: 834 IILNPLGVPSRMNVGQIFECLLGLAGDQLNKRFKILPFDEMYQNEASRILINQKLKDAAK 893 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 +Q L + G+I L DG Sbjct: 894 KQNKP---------------------------------------WLFSAYSPGKILLSDG 914 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 RTGE+F+ PV VG Y+LKL HLV+DK+HARSTG YSL+TQQP+GGK+Q GGQRFGEMEV Sbjct: 915 RTGEKFDNPVLVGRSYILKLAHLVEDKIHARSTGPYSLITQQPVGGKSQNGGQRFGEMEV 974 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 WALEA+GAAYTLQE+LT+KSDD+ GR + +IV G + +PESF VL++E+ +LG+ Sbjct: 975 WALEAFGAAYTLQELLTIKSDDMQGRDDVLNSIVCGQEIPKSSIPESFKVLMRELNALGL 1034 Query: 1336 NIE 1338 +I Sbjct: 1035 DIT 1037 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 77/413 (18%), Positives = 140/413 (33%), Gaps = 33/413 (7%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS-GNSELQYV--SYRLGE 77 + +P L IQ SF F+ GL S+ PI + +L+ + L Sbjct: 7 ITKLPDFLEIQRSSFCWFL------LKGLSYELNSLSPIIDVNVKRVKLKLYPQEFVLKP 60 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK---DIKEQEVYMGEIPLMTDNG 134 + TY + + ++ + E+ T K + +++V++G+IPLMT G Sbjct: 61 GRTTPICAKQNDSTYGVRIFLPAEVIYCDTESKYPTKKNRLEDIKEKVFIGQIPLMTSTG 120 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 +F++NG E +Q+ R PG+++ ++ + ++ II RGSWL FEFD Sbjct: 121 SFIVNGCE-GYRNQIIRCPGLYYKAE----FLNNNIVSTVTIIAQRGSWLKFEFDKNGY- 174 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 +VRID+ +K+ L LN E+IL E L+ Sbjct: 175 WVRIDKEKKISIFDFLEGLNINDEEILSGLKSIAPLLKYKKT------QEILKRNNDPDL 228 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 K + R + L I+ +V D + Sbjct: 229 KNLIEK-ITDPNSYSLGIIGRLNLNRRLGLN------ISTRVHTLTIHDIFGIIDFFLSA 281 Query: 315 MELSLDLLAKLSQSGHKRIETLFT--NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 D + L + + L T ++ L + + L + RP Sbjct: 282 RSFVPDDIDDLRNRRIRAVGELITSQCEIGLNRLERNILERTNFSGSVRILPKTLVNARP 341 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 +E S + + + + + + ++ DI Sbjct: 342 IMSAIQEFFNSSQLSHYMDQTNLLSETANKRRISALGPGGLNADRVTVAARDI 394 >UniRef50_B6KDI3 DNA-directed RNA polymerase n=4 Tax=Alveolata RepID=B6KDI3_TOXGO Length = 1332 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 189/1317 (14%), Positives = 350/1317 (26%), Gaps = 277/1317 (21%) Query: 143 RVIVSQLHRSPGVFFDSDKGKT--HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 + +V Q S F D++ S +++ + + +L+ I + Sbjct: 174 KGLVHQHIESYNFFVDTELQNILRAPSNRLVKSDVDPSFFIEFLNISVGTPRYEEGMILQ 233 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR------------- 247 R P R + Y +D + K IR +++ +P LR Sbjct: 234 -RLTPRICRTREITYAAPVFVDAEYSKGDEIIRRKHVEIGSIPVMLRSRVCVLHGKDPQT 292 Query: 248 ---------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 F ++ KV + + + R I + + V K Sbjct: 293 LQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIVETDMKHNVCATVTSATAESK-SR 351 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL--------------DHG 344 + ++ + + L L G + + + + Sbjct: 352 TAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQEIMQMIGAGGALADVTGNTAQEAV 411 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRP-------GEPPTREAAESLFENLFFSEDRYDL 397 + + + AL+ + +RP P R A S S Sbjct: 412 SLSLQDCHTENVLTQQQALLWVGSRIRPKMQAKGFFTPVARGALLSERGGAGRSAKSVVD 471 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 AV + E + ++++++D + +DD D+ GN+R+ G Sbjct: 472 EAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAASDPSLMDDKDYYGNKRLELAG 531 Query: 458 EMAENQFRVGLVRVERAVKERL-------------------SLGDLDTLMPQDMINAKPI 498 ++ F R VK++ ++ + I Sbjct: 532 QLLSLLFEDLFKRFCTHVKKQADYALSRYHQARGGAGGLGSRKDEVPYPDCFRNLPTDII 591 Query: 499 SAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 + ++ + SQ + + + ++ + RI++ + R Sbjct: 592 TRGMQTALSTGNWTIKRFRMERSGVSQVLSRLSYIATLGMMTRINS----QFEKGRKVSG 647 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL 606 R + P+ +G +CP +TPEG + GL+ +L++ TP + + ++ + Sbjct: 648 PRALQPSQWGMLCPCDTPEGESCGLVKNLALVTHVTTDEDP-TPISSLAFCLGVEDADAI 706 Query: 607 SAIEEG--NYVIAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 S E + N L ++++ R GE F V+ T + Sbjct: 707 SGEELHDRGTYLVMLNGALLGVHRRPRQLMKNIRLLRRHGEVGEFVSVHVNEAH-KTVYI 765 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 S G L L D+ R + Q L+ + + + V+ + Sbjct: 766 ASDGGRLCRPLIVVDSGRPRLLPTHMAQLENGEMCFMDLLRSSILEWIDVNEENNLLIA- 824 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 + + Sbjct: 825 --------------------------------------------------LREEDITAET 834 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 L P T LG + + + +N + ++ + Sbjct: 835 THLEIDPLTLLG-------VVAGLIAFPNHNQSPRNTYQCAMGKQAMG----AIAYNQFN 883 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 R L + P L + + + Sbjct: 884 RCDTLLYLLVYPQKPLCKSRTLDLVHFEQLPA-------------------------GQN 918 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE----------- 949 AI D++D+ + V R VE K Sbjct: 919 ASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSVELKKYFNGSTDRTFPPPVAQA 978 Query: 950 --------------EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 + + +S + LE R+ +L V K Sbjct: 979 SGPGSGKAASGLHRKSFFPGGRGAVSRRFEALEDDGVVRVGELLEEDQVYVHKFSPTNTR 1038 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 + L L + D + KV + Sbjct: 1039 EHVSDPLQL------DNSLYAPSFARYKTVVPSYVERVVCTDNSD-----GCRTYKVMMR 1087 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 +P + SR Sbjct: 1088 --------------------------QTRLPELGD-----------KFSSR--------- 1101 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 G K L E E + ++ E++ Sbjct: 1102 --------HGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHGFPSRMTVGKMMELIAGKSA 1153 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 L+ G F G + E+L SG+ L G TGE + V G +Y KL Sbjct: 1154 LQVGACQYGTAFGGVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKL 1213 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKS 1295 H+V DK+HAR G L+T+QP G+A+ GG R GEME L AYG++ L E L + S Sbjct: 1214 KHMVQDKIHARGRGPRQLLTRQPTEGRAKEGGLRLGEMERDCLVAYGSSALLMERLMLSS 1273 Query: 1296 D----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 D V G H MP + +L +E+ S+ + L + Sbjct: 1274 DVFEASVCSTCGLMGYEGWCPYCKSGKHVAPIRMPYACKLLFQELMSMNVCPRLHIK 1330 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 144/1092 (13%), Positives = 300/1092 (27%), Gaps = 210/1092 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 + P L+ ++S+ F++ + + A + + +++++ Sbjct: 162 DKWRLLPAFFAAKGLVHQHIESYNFFVDTELQNIL---RAPSNRLVKSDVDPSFFIEFLN 218 Query: 73 YRLGEPVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +G P + + C+ R +TY+AP+ V + + I+ + V Sbjct: 219 ISVGTPRYEEGMILQRLTPRICRTREITYAAPVFVDAEYSKGD--------EIIRRKHVE 270 Query: 124 MGEIPLM------------------------TDNGTFVINGTERVIVSQLHRSPGVFFDS 159 +G IP+M G F++ GTE+V++ Q S Sbjct: 271 IGSIPVMLRSRVCVLHGKDPQTLQRLGECPFDPGGYFIVKGTEKVLLMQEQLSKNRIIV- 329 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTE 218 + H+ + +A S LPA I+LRA+ T + Sbjct: 330 ETDMKHNVCATVTSATAESK--SRTAVVLKNNKLYLRHNSFLDDLPACIVLRAMGTETDQ 387 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRIT-ARHIRQL 277 +I+ + E V L+ V ++ + IR Sbjct: 388 EIMQMIGAGGALADVTGNTAQEAVSLSLQDCH-------TENVLTQQQALLWVGSRIRPK 440 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 + V + + +G + Sbjct: 441 MQAKGFFTPVARGALLSER-----------------------------GGAGRSAKSVVD 471 Query: 338 TNDLDHGPYISETLRVDPTNDRLSA--LVEIYRMMRPGEPPTREAAESLFENLFFSEDRY 395 + + ++ R L + R + + + E Sbjct: 472 EAVDVLHRVVLSHIETTGSDFRAKTRFLCLMIRRVLDAASDPSLMDDKDYYGNKRLELAG 531 Query: 396 DLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI-------DHL 448 L ++ + + D + + R G G + D Sbjct: 532 QLLSLLFEDLFKRFCTHV------KKQAD--YALSRYHQARGGAGGLGSRKDEVPYPDCF 583 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKE-RLSLGDLDTLMPQDMINAKPISAAVKEFFG 507 N ++ + L +K R+ + ++ + + Sbjct: 584 RN----LPTDIITRGMQTALSTGNWTIKRFRMERSGVSQVLSRL------------SYIA 627 Query: 508 SSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 + M + N S+ R++S R + P+ +G +CP +TPEG Sbjct: 628 TLG---MMTRIN--SQFEKGRKVS--------------GPRALQPSQWGMLCPCDTPEGE 668 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG--NYVIAQANSNLDE 625 + GL+ +L++ TP + + ++ +S E + N L Sbjct: 669 SCGLVKNLALVTHVTTDEDP-TPISSLAFCLGVEDADAISGEELHDRGTYLVMLNGALLG 727 Query: 626 EGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM 681 ++++ R GE F V+ T + S G L L D+ R + Sbjct: 728 VHRRPRQLMKNIRLLRRHGEVGEFVSVHVNEAH-KTVYIASDGGRLCRPLIVVDSGRPRL 786 Query: 682 GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT-----------------------AVA 718 Q L+ + + + V+ + Sbjct: 787 LPTHMAQLENGEMCFMDLLRSSILEWIDVNEENNLLIALREEDITAETTHLEIDPLTLLG 846 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 G++ + + ++ + M G Y ++ R + + P L + Sbjct: 847 VVAGLIAFPNHNQSPRNTYQCAMGKQAMGAIAY--NQFNRCDTLLYLLVYPQKPLCKSRT 904 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 +L GQN VA M ++GY+ ED+I+++ V ++ + Sbjct: 905 LD-------LVHFEQLPAGQNASVAIMSFSGYDIEDAIVLNRGAVDRGFGRCFALRRYSV 957 Query: 839 VSRDTKLGPEEITADIPNVG--------------------------EAALSKLDESGIVY 872 + G + T P L++ G+V Sbjct: 958 ELKKYFNGSTDRTFPPPVAQASGPGSGKAASGLHRKSFFPGGRGAVSRRFEALEDDGVVR 1017 Query: 873 IGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQ 932 +G + + V K +P + + S S R V V V Sbjct: 1018 VGELLEEDQVYVHKFSPTNTREHVSDP------LQLDNSLYAPSFARYKTVVPSYVERVV 1071 Query: 933 VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + + + + + K S Q GL + + A L Sbjct: 1072 CTDNSDGCRTYKVMMRQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMN 1131 Query: 993 PRDRWLELGLTD 1004 P + + Sbjct: 1132 PHGFPSRMTVGK 1143 >UniRef50_Q9LK40 DNA-directed RNA polymerase n=26 Tax=Spermatophyta RepID=Q9LK40_ARATH Length = 1172 Score = 613 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 222/1382 (16%), Positives = 412/1382 (29%), Gaps = 311/1382 (22%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 D L+S QL+S+ FIE GL+ F+S + L EP Sbjct: 41 SFFDKYGLISHQLNSYNYFIEH------GLQNVFQSFGEM---------------LVEPS 79 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 FDV + + Y+ ++ + + + ++ + + MT + +N Sbjct: 80 FDVVKKKDNDWRYATVKFGEVTVEKPTFFSDDKELEFLPWH----ARLQNMTYSARIKVN 135 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 V + + +S +G+ Y + I + +D L Sbjct: 136 VQVEVFKNTVVKS----------DKFKTGQDNYVEKKI--------LDVKKQDILI---- 173 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG 259 +P + E + + + F I+ Sbjct: 174 --GSIPVMVKSILC--------------KTSEKGKENCKKG---DCAFDQGGYFVIKGAE 214 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLI-----EVPVEYIAGKVVAKDYIDESTGELICAAN 314 KV++ + + T R V + ++ A+DY + + Sbjct: 215 KVFIAQEQMCTKRLWISNSPWTVSFRSENKRNRFIVRLSENEKAEDYKRREKVLTVYFLS 274 Query: 315 MELSLDLLAKLSQSGHKRIET---LFTNDLDHGPYISETLRVDPTNDRL--------SAL 363 E + + G + L D D + + D + +AL Sbjct: 275 TE--IPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHVADAVCEAFRCGNNAL 332 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 + + ++ + P E+ + F S Sbjct: 333 TYVEQQIKSTKFPPAESVDECLHLYLFP----------------------GLQSLKKKAR 370 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG- 482 + ++K L++ GK + ++ D N+RI GE+ E + RV L R + + Sbjct: 371 FLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHL 430 Query: 483 --DLDTLMPQDMINAKPISAAVKEFFGSSQLSQF-------------MDQNNPLSEITHK 527 D D + ++A I+ + F + S + + NPL + Sbjct: 431 SGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDL 490 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RR + + R HP+H+GRVC + TP+G N GL+ ++S+ + L Sbjct: 491 RR----TRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQ-SL 545 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD----EEGHFVEDLVTCRSKGESS 643 E+ K+ +E+ + N + + FV +L + R + E Sbjct: 546 ESVVEKLFA-CGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELP 604 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 + D D N + + R P L + Sbjct: 605 REMEIKRD----------------------KDDNEVRIFTDAGRLLRPLLVVEN------ 636 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 + + + YP + +D L + Sbjct: 637 -LQKLKQEKPSQ--------------------------YPFDHLLDHGILELIGIEEEED 669 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 C L + + S LG A +P+ ++ +L + Sbjct: 670 CNTAWGIKQLLKEPKIYTHCELDLSFLLGVSC-------AVVPFANHDHGRRVLYQSQKH 722 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 + I R L + P A L + Sbjct: 723 CQQ---AIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKK---------------- 763 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 L + + A+ + +DS + + + + E D Sbjct: 764 ---------EVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDA 814 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + E + ++ + + +I K+D L D + +G Sbjct: 815 KDSE-KRKKMDELVQFGKTHSKI--------------------GKVDSLEDDGFPFIGAN 853 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063 + + E + H + K + V L R G Sbjct: 854 MSTGDIVIGRCTESGAD--HSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLG 911 Query: 1064 DKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKG 1123 DK + HG KGV+ + ++ P+ G DIV+NP PSR GQ+LE L Sbjct: 912 DKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKG--- 968 Query: 1124 IGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIA 1183 I ++++ A + + A Sbjct: 969 ----IACPIQKEGSSAAYTKLTRHA----------------------------------- 989 Query: 1184 TPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 F EI E L G R+Y+GR+GE + +G + +L H+ +DK+ Sbjct: 990 -TPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKV 1048 Query: 1244 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1303 R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E L SD Sbjct: 1049 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHIC 1108 Query: 1304 -----------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 + V +H + +P +L +E+ S+GI + + Sbjct: 1109 RKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNFD 1168 Query: 1341 DE 1342 + Sbjct: 1169 TK 1170 >UniRef50_B9RNV9 DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RNV9_RICCO Length = 1203 Score = 609 bits (1571), Expect = e-172, Method: Composition-based stats. Identities = 202/1362 (14%), Positives = 399/1362 (29%), Gaps = 272/1362 (19%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF 80 + L+S Q++S+ FI G++ AF S + + EP + Sbjct: 70 FFNEYGLISHQINSYNDFINN------GIQKAFDSFGEL---------------VVEPGY 108 Query: 81 DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVING 140 D + Y++ K+ L + K + + MT + +N Sbjct: 109 DPSKKGENEWRYASVKFGKVALEKPTFWSGADEHKMLPRH----ARLQNMTYSSKMKVNV 164 Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 + V ++ RS + + ++D E DN + I Sbjct: 165 SVEVYTRKVVRS---------------------DKFKTGKDQYVDKEVLNTDNRNITI-- 201 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGK 260 LP + T + D F+ + + ++ + E++ + Sbjct: 202 -GSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWT 260 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 V + + +R + ++ ++ + + ++ + L A + + Sbjct: 261 VSYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEI---PLWILFFALGVTSDKE 317 Query: 321 LLAKLSQSGHKR--IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 ++ + + + F + D + + AL + R +R P Sbjct: 318 VIDLIGYGSNDARIVNIFFASIHDADE------KTEGFRRGKEALEYVVRQIRGTRFPPG 371 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 E + LF S + ++K L+ NG Sbjct: 372 ENEDFFLLYLF-----------------------PTLHSLRQKARFLGYMVKCLLQAYNG 408 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG---DLDTLMPQDMINA 495 + + ++ D N+R E+ E + +V + R + + L D D + ++A Sbjct: 409 QRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDA 468 Query: 496 KPISAAVKEFFGSSQLSQF---MDQN----------NPLSEITHKRRISALGPGGLTRER 542 ++ + F + S M++ NPL + R+ + Sbjct: 469 SIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTMVDLRK----TRYHVQYTG 524 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 + R HP+H+GRVC + TP+G N GL+ +L+ + + P ++ Sbjct: 525 KVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVN--ILEPLIDKLIARGMEK 582 Query: 603 IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 + S + N V + QV+ QQ Sbjct: 583 VPEDSHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQ--- 639 Query: 663 VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGG 722 + ++ R P L A + G Sbjct: 640 ---------------EVRIFSDAGRILRPLLVVQN----LHKIEAFKGGNCTFQSLLDKG 680 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 ++++V + +G+D G+ + Sbjct: 681 IIEFVGTEEEEDCSTAWGIKFLLSGVD------------------------GKQSLKYTH 716 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 S LG +P+ ++ +L + + I R Sbjct: 717 CELDMSFLLGLSC-------GIIPFANHDHARRVLYQAQKHSQQ---AIGFPTTNPNIRV 766 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 L + P L GD G + +L + + Sbjct: 767 DTLSHQLYYPQRPLFRTVTSDCLG-----------KPGDT-RGHNGIVPKPELYNGQNAI 814 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE 962 A+ + +DS + + + + + D + L + Sbjct: 815 VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRR----------- 863 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK 1022 + + ++D L D + +G + + + AE + Sbjct: 864 -----KYDDNVNFGKIPSK----IGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPD-- 912 Query: 1023 HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 H + K + V L R GDK + HG KGV+ + Sbjct: 913 HSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 972 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 E+ P+ G DIV+NP PSR GQ+LE LG G A V + Sbjct: 973 ENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYATPFSTLSVEAIT 1032 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 + RA + + R G + + +F Sbjct: 1033 NQLHRAGFSRWGNERVYNG---------------RTGEMVRSLIF--------------- 1062 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 +G + +L H+ +DK+ R+TG +T+QP+ + Sbjct: 1063 ------------------------MGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADR 1098 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK--------------- 1303 +FGG +FGEME L A+GA+ L E L SD + + K Sbjct: 1099 KRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRK 1158 Query: 1304 ----MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + + ++ +P +L +E+ S+GI+++ E Sbjct: 1159 IRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLKFET 1200 >UniRef50_B6AI41 DNA-directed RNA polymerase n=2 Tax=Alveolata RepID=B6AI41_9CRYT Length = 1341 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 211/1443 (14%), Positives = 414/1443 (28%), Gaps = 296/1443 (20%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQI 87 + ++SF F+ GL ++ I + + +G + +E Sbjct: 51 VWPHIESFNCFL------LTGLSNIVINLPSIY-IDSDYVIDDCELNVG---YIPRE--- 97 Query: 88 RGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVS 147 +++++ + P + ++Y Sbjct: 98 ---------YLRIKVTCIKVGKPIFGSTESSNTKMY------------------------ 124 Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF--DPKDNLFVRIDRRRKLP 205 + +G + Y+A + W++FE + +P Sbjct: 125 --------------PCSARNGHLSYSAPL------WIEFECYNSSSKSSVRHNLFAGSIP 164 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDIEANGKVY 262 + A + + +L + +R + ++ + + Sbjct: 165 IMVRSLACHLYSLSPNELVANGEDPNEVGGYFIINGNERVIRYVIQQRCNYPVGLKRSRF 224 Query: 263 VEKGRRITARHI--RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 + T I R L D + V + ++ L L Sbjct: 225 TSRDIFGTEYAILLRSLRNDGTSTANYLYGTTDNQCVYRILLNRQEWLLPFWN----VLL 280 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 + + + R + L Y V L + PP+ + Sbjct: 281 AVGSIYDAKTLRNKILQYCCNTRDEY-DPLYGVINMLTIEWGLDNSSGVENSVIPPSYDG 339 Query: 381 AESLFE-----------------NLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 A E +F+ GR + +L E + + Sbjct: 340 AFGDIEIIENRHLHNLGKLVWEGVVFYLPPGSLYQDAGRFIIDNHILVHLPEWN--AKLE 397 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD 483 +I + KL+ ++ G+ + ID + I S G + + + + + ++ Sbjct: 398 CLILMFIKLLKLQYGQIREESIDSFAYQEILSSGNLYASVLKDAIFSFLQKIRMIYITEI 457 Query: 484 LDT------------------------------LMPQDMINAKPISAAVKEFFGSSQ--- 510 + + N I ++ F + Sbjct: 458 RNRNSSKSEKEASDELPLPYSSAALDLLRDDSFFKTSLIRNISMIPKRIQYFMATGNIKT 517 Query: 511 ----------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 + D+ N ++H R A+ G +VR + +G +CP Sbjct: 518 TQLDLQQLSGWTVVADRLNFNRFLSHFR---AVHRGQFFTTMKTTDVRKLMGETWGFLCP 574 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV-----------TDGVVTDEIHYLSAI 609 + TP+G GL+ LS +++ + + DG+ T I + S Sbjct: 575 VHTPDGEPCGLLLHLSQDTIPVTQFEIQSTLKNLRDYLVGQNIPCDDGLGTLSIQWGSLN 634 Query: 610 EEGNYVI-------------AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS 656 + YV + + + E L + ++ + + Sbjct: 635 LDDIYVPDLSKSVPVMLDGRVMFHIPKLKFTFWQEKLRNLK-WSKTPSILPVHTEIACIP 693 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAV--PTLRADKPLVGTGMERAVAVDSGV 714 V + + F R ++ + P + + T E ++ Sbjct: 694 P--DCGVFSGIFMFTAPGRLVRPVLHLKSNKIDWIGPLAQPWMDIGVTEEETQKSIKLYN 751 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 + G S I N D+ E Y L N +Q Sbjct: 752 LQMKLFGLYRNDNITSDIETTDNMDKNQIEEMIKKDYTLG----CNPVMYTHQ------- 800 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 PST L + + +P+ +N + +++++ T + Sbjct: 801 ---------ELHPSTILS-------ITASLIPYAHHNQSPRNMYQCQMLKQTMGTPCYSY 844 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 +R + IT P V G ++ Sbjct: 845 PYRTDNRMYR----IITPQNPLVITKGY-------------------------ASYGFSE 875 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD----GVEKDKRALEIEE 950 + A+ D++D+ + + V+ + + E Sbjct: 876 YPTGTNAIVAVISHSGYDMEDAMVLNKASYERGIFHACVYKTKILFAAPNSVIKKSDAES 935 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD--EEKQ 1008 + D ++ L A I LV G + ++++ Sbjct: 936 YRFHNIGPDGKLVIKELGADGLPMIGQKLVKGSPMCRVEKLGSGGVISNAIVQTYHDDEE 995 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 +E++ L E G + + G + + + L + R GDK A Sbjct: 996 AYVEKINRVGSGLSTESHSDSTLGGSGGPGGSEYSSGYGEKISLKLRIVRNPMVGDKFAS 1055 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK- 1127 RHG KG++S + P E+MP+ E+G DI+ NP G PSRM +G ++E G AA G Sbjct: 1056 RHGQKGILSMLWPHENMPFGESGIVPDILFNPHGFPSRMTVGMLIECMAGKAACLHGASA 1115 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 ++A + K + D +DLS Sbjct: 1116 LDATPFHRNITDKQT--------ILEDKEMGIDLS------------------------- 1142 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 + + L G L++G TG + + +G +Y +L H+V DK RS Sbjct: 1143 KQSTVDYFGKALLKTGFQYFGCEPLFNGMTGTEMPCHIFMGVIYYQRLRHMVADKAQVRS 1202 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 TG +T+QP+ G+ + GG RFGEME +L +YG + + + L SD+ Y Sbjct: 1203 TGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSIIADRLLKCSDEHKAYVCPYCG 1262 Query: 1308 IV----------------------------DGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 ++ +P F L E+ ++ I I L Sbjct: 1263 LIFSAILPRKTTNFQNRLATTLPHVAICKVCKTPCRLITLPYVFRYLCNELATMNIVIRL 1322 Query: 1340 EDE 1342 E E Sbjct: 1323 ELE 1325 >UniRef50_P22138 DNA-directed RNA polymerase I subunit RPA2 n=43 Tax=Fungi/Metazoa group RepID=RPA2_YEAST Length = 1203 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 199/1440 (13%), Positives = 393/1440 (27%), Gaps = 352/1440 (24%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDV-PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 + E++ + K + + + SF E G L + + Sbjct: 15 DFRTLERESRFINPPKDKSAFPLLQEAVQPHIGSFNALTEGPDGGLLNLG--VKDIGEKV 72 Query: 61 SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSA-PLRVKLRLVIYEREAPEGTVKDIKE 119 + G +P+ E I Y L V + V + V E Sbjct: 73 IFDG------------KPLNSEDE--ISNSGYLGNKLSVSVEQVSIAKPMSNDGVSSAVE 118 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 ++V + + + S L Sbjct: 119 RKV---------------------------------YPSESRQRLTSYRGKL-------- 137 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM 239 L + + + + LP + + +L K + + Sbjct: 138 -LLKLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIV 196 Query: 240 ELVPERLRG---ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 + + +R + + + + +G + I+ + V + + Sbjct: 197 NGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQ--------IRSVRPDQTSQTN 248 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 V D E + ++ L H +F D G + ++ D Sbjct: 249 VLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIF--DGIIGNDVKDSFLTDRL 306 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 L + Y ++ + + S D+ DL VG+ +R +L + Sbjct: 307 ELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLE-VGQEVLDRIVLVHLGKD 365 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 ++ +++KL + G+ D+ D ++ + G + + + + + Sbjct: 366 GSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNII 425 Query: 477 ER----------LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL--------------S 512 + ++ D + M + I + ++ F + L + Sbjct: 426 AQVRMDINRGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYT 485 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 ++ N I+H R + G + VR + P +G +CP+ TP+G GL+ Sbjct: 486 VVAEKINFYRFISHFRMV---HRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLL 542 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY-------LSAIEEGNYVIAQANSNLDE 625 N + + + + + + + L ++ +I + ++ Sbjct: 543 NHFAHKCRISTQQSDVSRIPSILYSLGVAPASHTFAAGPSLCCVQIDGKIIGWVS--HEQ 600 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 + L + +G++ D + +P + Sbjct: 601 GKIIADTLRYWKVEGKTPGLPID--------------LEIGYVPPSTRGQYPGLYLFGGH 646 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 R P + E V V + P E Sbjct: 647 SRMLRPV-----RYLPLDKEDIVGPFEQV---------------------YMNIAVTPQE 680 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 +++ ++T +N + + Sbjct: 681 IQNNVHTHVEFTPTNILS------------------------------------ILANLT 704 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 P++ +N + ++ ++ T ++ +L T P V Sbjct: 705 PFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQ----TGQTPIVKANLYDDY 760 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 + A+ D+ D+ Sbjct: 761 GMDNFP-------------------------NGFNAVVAVISYTGYDMDDA--------- 786 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 + + E+ + + + + + I + F Sbjct: 787 ------MIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGN-------DEWP 833 Query: 986 AEKLDKLPRDRWLELGLTDEEKQ----NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 E L+KL D +G EE + L + + H E + I GD+ Sbjct: 834 KEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLI--GDE 891 Query: 1042 LAP-GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 L+ V + ++R Q GDK + RHG KGV S+ P DMP+ E G DI++NP Sbjct: 892 SNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINP 951 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 P + IG + ++ A GA D Sbjct: 952 HAFP---------------SRMTIGMFVESL----------------AGKAGALHGIAQD 980 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQ 1220 + + E D E L G +Y G TGE+ Sbjct: 981 STPWIFNE-------------------DDTPADYFGEQLAKAGYNYHGNEPMYSGATGEE 1021 Query: 1221 FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 + VG +Y +L H+V+DK RSTG + +T QP+ G+ + GG R GEME AL Sbjct: 1022 LRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIG 1081 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKM----------------------YKNI---------- 1308 +G ++ LQ+ L SD + Sbjct: 1082 HGTSFLLQDRLLNSSDYTQASVCRECGSILTTQQSVPRIGSISTVCCRRCSMRFEDAKKL 1141 Query: 1309 --------------------------VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 V GN +P L E+ ++GI + E Sbjct: 1142 LTKSEDGEKIFIDDSQIWEDGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRLRYNVE 1201 >UniRef50_Q7Q416 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bilateria RepID=Q7Q416_ANOGA Length = 1089 Score = 607 bits (1564), Expect = e-171, Method: Composition-based stats. Identities = 179/1251 (14%), Positives = 349/1251 (27%), Gaps = 255/1251 (20%) Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPAT 207 Q S F + D K + + + + + +L+ D + + P Sbjct: 36 QHIDSFNYFINVDIKKIVQANQEVKSDADPCFYLKYLNVHVGKPDVEEGFNNTKSTTPHE 95 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR-------------------- 247 LR + Y+ +D+ + + + N L + +P LR Sbjct: 96 CRLRDMTYSAPITVDIEYTRGTQRVVRNGLLIGRMPIMLRSSNCVLTGKSDYQLSKVNEC 155 Query: 248 --GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 F I KV + + + + I + + + K + + Sbjct: 156 PMDPGGYFIIRGTEKVILIQEQLSWNKMITE--DYNGVIQCQVTSSTHEKKSRTILLTKH 213 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTN---DLDHGPYISETLR---VDPTNDR 359 + +M + + L G + + D + + +L + Sbjct: 214 GRYYLKHNSMTEEIPVAIILKAMGIASDQEIMQLVGIDPETQKRFAPSLLEAANHKVFTQ 273 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL + + F A + + Sbjct: 274 QRALEYMGSKL----------IAKRFTTAATKYKTTADEARDLLATTILAHVPVPSFNFQ 323 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--- 476 + + ++++++ + VDD D+ GN+R+ G + F R +K Sbjct: 324 VKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKMIA 383 Query: 477 -ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEITHKRRISA 532 + + + I+A ++ + + M++ ++ ISA Sbjct: 384 DKNIPKIKAAQFDVGKHMREALITAGLETAISTGNWTIKRFKMERAGVTQVLSRLSYISA 443 Query: 533 LGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 LG + R R + P+ +G +CP +TPEG GL+ +L++ Sbjct: 444 LGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTE-VD 502 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVI--AQANSNLDEEG----HFVEDLVTCRSKGE 641 E P ++ ++I L N + N N+ VE R +G Sbjct: 503 EEPVIRLAYNAGVEDIRLLGGETINNPKVFMVFINGNILGVTIAYRRLVEVFRMMRRRGL 562 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 F + + + R P + Sbjct: 563 IGAFVSIHTSFTQRC----------------------VYIHTDGGRLCRPYIIVQ----- 595 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 G Y+D + + + E ID Sbjct: 596 -------------------AGRPLYLDVNEEN----DSFIAYQERDIDP----------- 621 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 E+ L P T LG + +P+ +N Sbjct: 622 ----------------EKTTHLEIEPFTLLG-------VCAGLVPYPHHNQSPRNTYQCA 658 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 + ++ I +R L + P V + + + Sbjct: 659 MGKQAMG----IIGYNQKNRIDTLMYNIVYPQSPMVRSRTIELTNFDKLPA--------- 705 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 + A+ D++D+ + + V+ Sbjct: 706 ----------------GQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSK--- 746 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 + Q + ++ G L G+ + + + Sbjct: 747 -----CTIKRYSNQTFDRIMGPMKDGVTGKIIAKHECLDTDGIVSPGERLTCKQTMVNKE 801 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 + + N +EQ A+ T ++ +VK+ L RR + Sbjct: 802 MPAVKSNNPIEQKESGQQP------IAYSARVLVSTNNEEEF-----LVKILLRQTRRPE 850 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GD SR Sbjct: 851 IGD-------------------------------------KFSSR--------------- 858 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 G K L +QE ++ + ++ E++ + +G Sbjct: 859 --HGQKGVTGLIVEQEDLPFNDYGMSPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKF 916 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 F G+K +++++ L G+ Y G TGE E + G +Y KL H+V D Sbjct: 917 HYGTAFGGSKCSDLQDELFNHGFNYLGKDVFYSGITGEPLEVYIYSGPVYYQKLKHMVQD 976 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----D 1297 KMHAR+ G +++T+QP G+++ GG R GEME L +YGA+ + E L + SD D Sbjct: 977 KMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFDVD 1036 Query: 1298 VNGRTK------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 V N MP + +L +E+ S+ I L+ + Sbjct: 1037 VCNVCGRLAYSSWCHNCRSSASVSTISMPYACKLLFQELTSMNIVPRLKLQ 1087 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 88/247 (35%), Gaps = 40/247 (16%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLS-IQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY 62 ++ + DFG ++ + ++ +DSF FI D + +S Sbjct: 9 DAPPVEKQKPDFGLSGKLTEETNKVNGQHIDSFNYFINVDIKKIVQANQEVKS-----DA 63 Query: 63 SGNSELQYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKL------------ 100 L+Y++ +G+P EC++R +TYSAP+ V + Sbjct: 64 DPCFYLKYLNVHVGKPDVEEGFNNTKSTTPHECRLRDMTYSAPITVDIEYTRGTQRVVRN 123 Query: 101 -----RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGV 155 R+ I R + Q + E P M G F+I GTE+VI+ Q S Sbjct: 124 GLLIGRMPIMLRSSNCVLTGKSDYQLSKVNECP-MDPGGYFIIRGTEKVILIQEQLSWNK 182 Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR-IDRRRKLPATIILRALN 214 D +G + + +++ ++P IIL+A+ Sbjct: 183 MITEDY-----NGVIQCQVTSSTHEKKSRTILLTKHGRYYLKHNSMTEEIPVAIILKAMG 237 Query: 215 YTTEQIL 221 ++Q + Sbjct: 238 IASDQEI 244 >UniRef50_Q9FXG4 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=Q9FXG4_ARATH Length = 1233 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 204/1409 (14%), Positives = 378/1409 (26%), Gaps = 283/1409 (20%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP 78 ++ L++ ++SF GL+ F + P+ Y N+E + + Sbjct: 14 EDFKELHNLVTHHIESFDYM------TLKGLDVMFNRIKPVSVYDPNTENELSNILF--- 64 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVI 138 Q +++ +I Sbjct: 65 ----------------------------FFVLNLLYGSCNVQFLFV----------LCLI 86 Query: 139 NGTERVIV--SQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 + T ++ + L +P + I Y G+++ ++ V Sbjct: 87 SLTSMILWLENPLVFAPQKESFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVV 146 Query: 197 RIDRR--RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 D+ + P ++ + + L K F Sbjct: 147 VRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGG----------------YFI 190 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + +V+ + E +D T +L N Sbjct: 191 LNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRN 250 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV------------DPTNDRLSA 362 + + L I E+L T Sbjct: 251 GSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGDGAIGTQLVRER 310 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSE----DRYDLSAVGRMKFNRSLLREEIEGSG 418 I +R TRE F + LS V L Sbjct: 311 AKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVKKESLSIVAEAVLRDYLFVHLDNDH- 369 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 + +I +++KL + + D+ D L N+ I G + + L R K Sbjct: 370 -DKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSL 428 Query: 479 LSLGDLDTLMPQD-------MINAKPISAAVKEFFGSS--------------QLSQFMDQ 517 L +T +I I +++ + + ++ Sbjct: 429 LKDELDNTNSKFSFESRKSLLILFSLIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAER 488 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 N L ++ R A+ G VR + P +G +CP+ TP+G GL+N ++ Sbjct: 489 LNFLRFLSFFR---AVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTR 545 Query: 578 YAQTNEYGFLETPYRKVTD---GVVTDEIHYLSAIEEGNYVIA--QANSNLDEEGHFVED 632 ++ + R VV V A ++ +G V Sbjct: 546 TSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGT 605 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 L + S R +V+ V + + +P + + R P Sbjct: 606 LSSNLVTKVVSYIRRLKVEAPSVIPEDLEV---GYVPTSMGGSYPGLYLASCPARFIRPV 662 Query: 693 LRADKP---LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 P + G VA + ++ G +Q + +I+ E+ + G Sbjct: 663 KNISIPSDNIELIGPFEQVANPINIIFISTFPG-IQSNEKKKILPNQVFMEISCPDGGNG 721 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA-FMPWN 808 N + +T G VA PW+ Sbjct: 722 GRNNS-------------------------------SLATHEEIHPTGMISVVANLTPWS 750 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 +N + ++ ++ + + + L T P V + Sbjct: 751 DHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQ----TPQSPVVRTKTYTTYSID 806 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 + A+ D++D+ + + V + Sbjct: 807 ENP-------------------------TGTNAIVAVLAHTGFDMEDAMILNKSSVERGM 841 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 Q++ + ++ + + + Sbjct: 842 CHGQIYQTENIDLSDQNSRF-------------------------DSGSKSFRRSTNKAE 876 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 ++ D +G + E ++ +H K + D + + Sbjct: 877 HFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKHPQ 936 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD-ENGTPVDIVLNPLGVPSRM 1107 + R GDK + RHG KGV S++ P DMP++ G D+++NP PSRM Sbjct: 937 RANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRM 996 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 I +LE+ + VD + F D Sbjct: 997 TIAMLLESIAAKGGSL-------------------------------HGKFVDATPFRDA 1025 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 E K ++ +LK G LY G G + + + + Sbjct: 1026 VKKTNGEEESK---------SSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFM 1076 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G +Y +L H+V DK RSTG +T QP+ G+ + GG RFGEME +L A+GA+Y L Sbjct: 1077 GPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLL 1136 Query: 1288 QEMLTVKSDDVNGRTK-----------------------------------MYKNIVDGN 1312 + L SD + Sbjct: 1137 HDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSK 1196 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIELED 1341 MP F L E+ S+ I + L+ Sbjct: 1197 GMETVAMPYVFRYLAAELASMNIKMTLQL 1225 >UniRef50_A2T324 DNA-directed RNA polymerase subunit beta n=4 Tax=Embryophyta RepID=RPOB_ANGEV Length = 1070 Score = 606 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 280/1139 (24%), Positives = 469/1139 (41%), Gaps = 182/1139 (15%) Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI- 274 + + + I+ + +P L +F I +V + + R + Sbjct: 78 SDLYVPAQLMRRRNGRIQRQTVHFGSIP--LMNSQGTFVINGIARVVINQILRSPGIYYD 135 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE 334 +L+ + + + G + + + + + ++ L G + Sbjct: 136 SELDHNGNSIYTGTIISDWGGRFKSEIDGKKR--IWVRLSKNRKVSIIILLLAMGLNMND 193 Query: 335 TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSE 392 L + + + A+VE+Y+ + G ++ + FF + Sbjct: 194 ILKNVRYPNIFLRLFQRQAENIQSYEDAIVELYKNLYSAGGNLVFSDSICKELQTKFF-Q 252 Query: 393 DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR 452 +++L GR N+ L + +L D++ + LI + G G +DDID L NRR Sbjct: 253 QKFELGQFGRRNLNKKLNLDVPGNEHLLLPQDLLAAVDYLIGVNYGIGTLDDIDDLKNRR 312 Query: 453 IRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 +RSV ++ Q + L R+E +++ + + P+ +I + P++ ++FFGS Sbjct: 313 VRSVADLLREQLGLALDRLEILIRQTIHTVARRKRLVTPKGLITSAPLTTIFQDFFGSHS 372 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 LSQF+DQ NPL+E+THKRR+S+LGPGGLTR A F+VRD++P+HYGR+CPIET EG N G Sbjct: 373 LSQFLDQTNPLAELTHKRRLSSLGPGGLTRRTASFQVRDINPSHYGRICPIETSEGMNAG 432 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV 630 LI SL+++A+ N+ G L +P+ K++ + + I YLS+ E+ Y IA N+ Sbjct: 433 LIASLAIHAKVNDRGSLLSPFYKISKTLGEEHIVYLSSEEDEYYRIATGNTL-----SLD 487 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 ++ R A Sbjct: 488 REIREER---------------------------------------------------AT 496 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 P + L + + ++ +++ + + M Sbjct: 497 PARYRQEFLTIAWKQIHFRSIFPFQYFSIGTSLIPFLEHNDANRALMGSNMQRQAV---- 552 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 L++ + T + + G V L QN Sbjct: 553 -PLSQPEKCIVGTGLESQIALDSGSVVVSNQDGQIAYLDGETISILLQN----------- 600 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 + E + + + + Sbjct: 601 --------------------------EKTVDIKSIIYE---------RSNNNTCIHQRPV 625 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 V G + G L+ T +L +L A + + +D+ L +S +I Sbjct: 626 VSQGERLRKGQ-LLADGTATVGGELALGRNILVAYMPWEGYNFEDAVL-----ISERLIY 679 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----EELQILEAGLFSRIRAVLVAGGVEA 986 ++T +E+ + + ++ K++ L+ L+ + + G V Sbjct: 680 EDIYTSFHIERYEINIYTTSQGPEKITKEIPHLDSYVLRHLDNNGLVVPGSWVETGDVLV 739 Query: 987 EKLDK--------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 KL +P + L+ + + L + + Sbjct: 740 GKLTPQEAENSLRVPEGKLLQAISGIQLANTRESCLKVPIGGRGRVIDVRWIYD------ 793 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 +D P + +V VY+ KR+IQ GDK+AGRHGNKG++SKI P +DMPY ++GTPVD++L Sbjct: 794 -EDTLPNIANMVHVYILQKRKIQVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMIL 852 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 +PLGVPSRMN+GQI E LG+A + ++ + + + A Sbjct: 853 SPLGVPSRMNVGQIFECLLGLAGDILKKHYRITPFDERYEREASRKLVFSELHEASQEAA 912 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + L + G+ RL DGRTG Sbjct: 913 IP---------------------------------------WLFEPDHPGKSRLIDGRTG 933 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 + FE+PVT+G YM+KL H VDDK+HARS+G Y+LVTQQPL G+++ GGQR GEMEVWAL Sbjct: 934 DIFEQPVTIGKAYMMKLIHQVDDKIHARSSGPYALVTQQPLRGRSRGGGQRVGEMEVWAL 993 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 E +G +Y LQEMLT+KSD + R+K+ +IV G +P +PESF +L++E+RSL +N Sbjct: 994 EGFGVSYILQEMLTIKSDHIPARSKLLGSIVTGKSIPKPNTVPESFRLLVRELRSLAVN 1052 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 75/343 (21%), Positives = 133/343 (38%), Gaps = 27/343 (7%) Query: 16 GKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSY 73 + ++ +P IQ + FQ+FI QD L + I+ E + Y Sbjct: 4 KENKKMFVLPEFGRIQFEGFQRFIHQD------LVEELTNFPKIEDIDQEVEFRLFGERY 57 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 RL EP ++ + TYS+ L V +L+ I+ Q V+ G IPLM Sbjct: 58 RLTEPCIKERDAVYQSFTYSSDLYVPAQLMR-------RRNGRIQRQTVHFGSIPLMNSQ 110 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GTFVING RV+++Q+ RSPG+++DS+ +G +Y II G E D K Sbjct: 111 GTFVINGIARVVINQILRSPGIYYDSELD---HNGNSIYTGTIISDWGGRFKSEIDGKKR 167 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI--RDNKLQMELVPERLRGETA 251 ++VR+ + RK+ I+L A+ IL IF + ++ + + Sbjct: 168 IWVRLSKNRKVSIIILLLAMGLNMNDILKNVRYPNIFLRLFQRQAENIQSYEDAIVELYK 227 Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + V+ + + +L+ + ++ + K +D E + Sbjct: 228 NLYSAGGNLVFSDSICK-------ELQTKFFQQKFELGQFGRRNLNKKLNLDVPGNEHLL 280 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 L+ G ++ + +++ LR Sbjct: 281 LPQDLLAAVDYLIGVNYGIGTLDDIDDLKNRRVRSVADLLREQ 323 >UniRef50_B7XI25 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=B7XI25_ENTBH Length = 1107 Score = 603 bits (1554), Expect = e-170, Method: Composition-based stats. Identities = 197/1273 (15%), Positives = 401/1273 (31%), Gaps = 226/1273 (17%) Query: 100 LRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDS 159 + I E + ++ Y+ + + + T + N E++I Q R + + Sbjct: 29 IEKEIKEIVQANDIIDSDIDRNFYLRYLNIRVEKPTMIENMVEQIIYPQECRIRDITYAG 88 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTE 218 + ++D E+ + ++ + K+P I + TT Sbjct: 89 NI---------------------YVDIEYIKNKEVIIKKNISMGKMPIMIRSSKCHLTTH 127 Query: 219 QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 + R L E + F I+ KV + ++ R I ++ Sbjct: 128 MLNSKII----MNERQKNLINYKTQECIYDNGGYFIIKGVEKVIHIQEQQSKNRIIIEMG 183 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFT 338 K+ + + I K + +E + ++ L G E + + Sbjct: 184 KNGL-YTSMTSSSIKHKNKTNVIYKNDKFYIQNTIFIE-DVPIVLVLKTLGLNTDEEIVS 241 Query: 339 NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLS 398 + + E+Y E + + Sbjct: 242 YIG-----------KEGVELMELSFGEVYEKDIYTETDALIELSKFIKLKSDDNKEIKVK 290 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGE 458 ++ K ++ ++ + + +++KLI + + DD D+LGN+R G+ Sbjct: 291 SILAEKLFPNIKIDDDLKN---KGICLCLMIRKLILAKQNLLKPDDKDYLGNKRFELAGQ 347 Query: 459 MAENQFRVGLVRVERAVKERLSL-------GDLDTLMPQDMINAKPISAAVKEFFGSSQL 511 + F + +K+ + + + + I+ + S Sbjct: 348 LLSILFEDTFKKFNFELKKSIDKILSKRIRTNEFDALTFFNLQTGSITTTLSRAISSGNW 407 Query: 512 ---SQFMDQNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIET 563 M+++ +T I+ALG + R R +HP+ +G CP +T Sbjct: 408 NLKRFKMERSGVTHVLTRYSYITALGMMTKINSHFEKTRKVSGPRSLHPSSWGMFCPADT 467 Query: 564 PEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYL--SAIEEGNYVIAQANS 621 PEG + GL+ +L++ + + + + + + ++ + S N + N Sbjct: 468 PEGESCGLVKNLALLTEISTESDSDI-IKNILQTLGVIKLKFCQESEFYAKNKFMVFING 526 Query: 622 NL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 L + + R +G+ + F + ++ + + + + L N Sbjct: 527 ELFGLTSNIEYLCCAIRKIRREGKINKFVSIFHNKLENA-IYISTDNGRICRPLIIIKKN 585 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN 737 + ++ L G+++YVD + Sbjct: 586 SNFFTNYQFQCNKIKYKSFNDL-------------------LLEGLIEYVDVNEENDC-- 624 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 L +SN N +E L + L Sbjct: 625 ---------------LIALHKSNIN-----------NLNIENYTHLEIADYSILS----- 653 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV 857 + +P+ +N + ++ R L + P Sbjct: 654 --LIAGLIPFPHHNQSPRNTYQCAMGKQAIGHI----GTNIKKRFDLLMLQLNYTQRPLS 707 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 L + I + A+ D++D+ Sbjct: 708 CSKILDINKYNKIPA-------------------------GINAMVAVMSYSGYDIEDAI 742 Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 + + + + V+V+ +E ++ E ++ + QI+E G Sbjct: 743 IVNKDSIERGFMRVEVYKTIKIEFERFTNGKTEEI-----YIVNGKEQIIEVGTHVMDGD 797 Query: 978 VLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 +L+ +K + ++ Sbjct: 798 ILITKVSPIDK-----------------------------KLKTVKYKGHPGYIDTIILS 828 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 +GDD KI+K+ + R ++ GDK + RHG KGV+ I P D+P++E G DI+ Sbjct: 829 KGDD-----DKILKIKVRETRCVEIGDKFSSRHGQKGVVGLIVPQVDLPFNEYGVCPDII 883 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 +NP G PSRM +G+ILE G+ +A + + I + + Sbjct: 884 MNPHGFPSRMTVGKILELIGSKVTCLTGEYTDATPFENNTADNDLKTIFNTTNQEPLHK- 942 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 + + + ++L SG+ G T Sbjct: 943 ------------------------------EHRQTELLCQILIDHGYSYSGKDVFTSGIT 972 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 GEQFE + G ++ +L H+V DK+H RS G +++T+QP G+++ GG R GEME Sbjct: 973 GEQFEAYIFFGPIFYQRLKHMVADKIHCRSRGPRAVLTRQPTEGRSKDGGLRLGEMERDC 1032 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV--------DGNHQMEPGMPESFNVLLKE 1329 L YGA L E L SD+ + I+ + MP + +L +E Sbjct: 1033 LIGYGANSLLNERLMHCSDEFDAFICETCGIICYKERCYWCSKKPIIVKMPYACKLLFQE 1092 Query: 1330 IRSLGINIELEDE 1342 + ++ I ++ E Sbjct: 1093 MMAMNILPKIILE 1105 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 57/405 (14%), Positives = 123/405 (30%), Gaps = 67/405 (16%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 +RKD L+ ++SF FIE++ + S N L+Y Sbjct: 1 MRKDGDLVDLFFADKNLVRQHIESFNYFIEKEIKEIVQANDIIDS-----DIDRNFYLRY 55 Query: 71 VSYRLGEPV---------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++ R+ +P QEC+IR +TY+ + V + + + I ++ Sbjct: 56 LNIRVEKPTMIENMVEQIIYPQECRIRDITYAGNIYVDIEYIKNKEV--------IIKKN 107 Query: 122 VYMGEIPLMTDN------------------------------------GTFVINGTERVI 145 + MG++P+M + G F+I G E+VI Sbjct: 108 ISMGKMPIMIRSSKCHLTTHMLNSKIIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVI 167 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP 205 Q +S + + + + + +P Sbjct: 168 HIQEQQSKNRIIIEMGKNGLYTSMTSSSI----KHKNKTNVIYKNDKFYIQNTIFIEDVP 223 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD---IEANGKVY 262 ++L+ L T++ + + K E+ + E+ + + ET + K Sbjct: 224 IVLVLKTLGLNTDEEIVSYIGKEGVELMELSFG-EVYEKDIYTETDALIELSKFIKLKSD 282 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL-ICAANMELSLDL 321 K ++ + +L + ++ + I ++ + I L + + Sbjct: 283 DNKEIKVKSILAEKLFPNIKIDDDLKNKGICLCLMIRKLILAKQNLLKPDDKDYLGNKRF 342 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 +T + + I + L + AL Sbjct: 343 ELAGQLLSILFEDTFKKFNFELKKSIDKILSKRIRTNEFDALTFF 387 >UniRef50_A7AT93 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AT93_BABBO Length = 1283 Score = 600 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 187/1421 (13%), Positives = 412/1421 (28%), Gaps = 260/1421 (18%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQEC 85 + +DSF FI+ R + P+ + + L+++ +P C Sbjct: 9 GAIHAHIDSFNAFIDHYST------RMVRRIPPVYISADSDHLKHLLNSKEKP-----HC 57 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVI 145 ++ V Y + +++ + T + +G Sbjct: 58 KLTAV-YHNITNLDVQVSVLSLRIGNPTRPGSE----CLG-------------------- 92 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP 205 S F + Y + +I G + + + +P Sbjct: 93 ------SDNRMF----PRHAKIAHTTYESSLIVKFG----LKIPGTSKVLTKELTVGYIP 138 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER------LRGETASFDIEANG 259 + + N ++ + + + LR N Sbjct: 139 IMVKSKRCNLDGISPEEMVEQGEDIDEPGGYFVVRGNERIVRQLIVLRSNYPLAIKSGNN 198 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 + + Q D + V + + + + + S + + ++ Sbjct: 199 RTKHVLFTDYSIMMRSQCHDDGCSVNNVLYLTVNKRCMFRTIVKGSVQLIPFGVLLRATM 258 Query: 320 DLL--AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 L+ +L Q + + + + + + +P + +I Sbjct: 259 PLMSDEELKQKLLQDTLGDEALTVYYQRFFLDLVEREPD------ICDIDLKENRHLYRL 312 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 A S Y G +L + + + ++ + KKLI + Sbjct: 313 GSACWSQVNQYLHPGATY--EECGAYFLRHYVLLQAKTNAE--KFETLLYMFKKLIKVSR 368 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV---------------RVERAVKERLSLG 482 G+ + ++ D + + G++ + L + + + + Sbjct: 369 GEIQTENYDSFAFQELLLPGQIYSCILKESLYVALLKIRSIYHAELLELCKNISGDATRH 428 Query: 483 DLDTLMPQDMIN------------------------AKPISAAVKEFFGSSQ-------- 510 L+ D+ + A I + F + Sbjct: 429 SKRRLIDVDLQSHEQKELLEKLLEKPELFSYAVEKVASDIPKKLHSFLATGNATNMHFEL 488 Query: 511 -----LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 L+ ++ N ++H R +L G L + EVR + +G +CP+ TP+ Sbjct: 489 TQSSGLTVVAERINYHRFMSHFR---SLHRGSLFAKMRSTEVRKLLGETWGFICPVHTPD 545 Query: 566 GPNIGLINSLSVYAQTNEYGFLET--------------PYRKVTDGVVTDEIHYLSAIEE 611 G GL+ L+ YA E VTD + + + + Sbjct: 546 GAPCGLLLHLAQYAVPVTATDCEGAAEAVKSLLRTHGYSVDFTGHETVTDFVTHDAQHIK 605 Query: 612 GNYVIA----QANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 +VI ++E +++ + G+ L ++ Sbjct: 606 RIHVIVDGVPMCTLPINEAPKLYDEIKLAKRYGKFGLKEHYEIVAS-------------- 651 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYV 727 + ++ R P + + +G + + + + Sbjct: 652 --PDVKGEYTSIMILTYPGRVIRPVIC-----LTSGEIEWIGPITQLWSTIAVS------ 698 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV-ERGDVLADG 786 ++ E ++ + + ++ P + + V + D + Sbjct: 699 --EEEARISHQMVASNAEGKCKTLSIDEALMHDNSSDHAVSPVKKVIDNVPVKYDYMEVS 756 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 PS L + A P++ +N + +++++ H ++ + + Sbjct: 757 PSAILS-------VTAALTPFSNHNQSPRNMYQCQMLKQSMGVPYHCEQFRSDVKAYR-- 807 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 + P V + + A+ Sbjct: 808 --LLFPQKPLVTTTEFRQ-------------------------MNYEDYPTGMNAVVAVI 840 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI 966 D++D+ + + + ++ ++ + ++ Sbjct: 841 AHTGFDMEDAMIINKSSLDRGAFHGCIYKSKVIDAM----------PANGRSRGNQHYFA 890 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ-LEQLAEQYDELKHEF 1025 L S+I A L G+ + ++ ++ + E+Y + Sbjct: 891 NTNHLGSKIIASLDKDGLPNVGARVKKGTPICRIESHEKVGGSKQISDRVEKYHDEDAIV 950 Query: 1026 EKKLEAKRRKITQGDDLAPGVLK--IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 ++ + + +K + + R GDK A RHG KG++S P E Sbjct: 951 DQVTIIGCNDASVAEMPNASNIKGTRATIKFRIVRNPIVGDKFASRHGQKGILSMAWPAE 1010 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR- 1142 +MP+ E+G DI+ NP G+PSRM IG+++E G +A G +A ++ Sbjct: 1011 NMPFLESGIIPDIIFNPHGLPSRMTIGKLIECMAGKSAAIHGAFQDATCFRKYPKQMATG 1070 Query: 1143 -EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 ++I G + R +S + + + L Sbjct: 1071 NKWIDHGGLKGWEERGFRYMSKEEELSKT-----------------EDDVIDYFGKTLLQ 1113 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 G +Y G G + + +G ++ +L H+V DK R+TG +T+QP+ G Sbjct: 1114 AGYDYYGTESMYCGSLGTEIRTHIFIGCIFYQRLRHMVSDKAQVRATGPVDAITKQPVKG 1173 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG--- 1318 + GG RFGEME +L A+GA+ LQ+ L SD + G Sbjct: 1174 RKNRGGIRFGEMERDSLIAHGASALLQDRLIHCSDAHTAYVCPNCGSIISATVTSVGATN 1233 Query: 1319 ------------------MPESFNVLLKEIRSLGINIELED 1341 +P + E+ S+ + I L Sbjct: 1234 KRSVSHCRICKVACKLVTIPYVLRYVAHELASINVGIRLHL 1274 >UniRef50_Q4QD43 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QD43_LEIMA Length = 1132 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 186/1289 (14%), Positives = 378/1289 (29%), Gaps = 230/1289 (17%) Query: 95 PLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPL---MTDNGTFVINGTE-RVIVSQLH 150 P + +R ++ A + +++ Q + + E + T + FVI R+ Q Sbjct: 24 PALMGMRGILNHHIASFDHLIEVELQRILLNESNVEIKSTVDPDFVIRYQNIRICRPQEI 83 Query: 151 RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD----NLFVRIDRRRKLPA 206 G + + Y +I +D ++ +D L + + +P Sbjct: 84 VGKGHIPKLVTPQECRIRDMTYRGDMI------VDVQYTSRDRSRAMLVEKDVKIGTIPI 137 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 + + N + +L + E F I+ KV + + Sbjct: 138 MLKSKCCNLYRKTREELV----------------NMRECPLDPGGYFIIKGVEKVCLVQE 181 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 ++ R I + ++ V + + ++ + + ++ L Sbjct: 182 QQSKNRVIIEADEHGNISAHV-QSKTHYSISKCAVTFKKGSIVLTHRSFTEDIPIIVVLK 240 Query: 327 QSGHKRIETLFTND---LDHGPYISETLRVD---PTNDRLSALVEIYRMMRPGEPPTREA 380 G + + + + + + AL I + E Sbjct: 241 ALGLENDQHITQCIGTLPEFQKILFPCFEEARLLNVVTQNDALQYIGEKRKETVWEAEET 300 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 + + L+ V + +++ + + + +++ +I+ Sbjct: 301 QQRQVNRSKADKAAEFLANVLLCHIREAQVQK--DWNFRHKAFYVCFMVRGMIEASFDTS 358 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-----SLGDLDTLMPQDMINA 495 +D+ D GN+R + G + F L + R VK + + ++ + Sbjct: 359 LLDERDFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLSRKDSTRPFNVKQLMES 418 Query: 496 KP--ISAAVKEFFGSSQL---SQFMDQNNPLSEITHKRRISALGP-----GGLTRERAGF 545 K I ++ S + M++ ++ I++LG + R Sbjct: 419 KMEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASSFEKTRKVS 478 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 R + P+ +G VCP +TPEG + GL+ + + +Q R + +EI Sbjct: 479 GPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVTLDLND-NYVRAAAHALGVEEIDT 537 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDL----VTCRSKGESSLFSRDQVDYMDVSTQQVV 661 ++ + +Y N L + L T R G + Q+ Sbjct: 538 VTPTDFLHYCTVFLNGTLIGIHRYPNRLCAGIRTLRRSGRLHPHVSISTQPRQRT-VQIG 596 Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG 721 S G ++ L + + + + L + G+ V V+ Sbjct: 597 SDGGRIVRLLIIVRDGKPAVTSAHLDRLRDRLCTHNDFLAEGLTEYVDVNE--------- 647 Query: 722 GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 ++ +I V ++ P T + P LG Sbjct: 648 -------SNDCLIAVYPADIGP-----------------YTTHLEVEPLSLLG------- 676 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 + +P+ +N + ++ T + + + R Sbjct: 677 ------------------VVAGIIPYPHHNQSARNTFQSAMGKQALGT-VALNQY---IR 714 Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 + P A+S +L Sbjct: 715 ADTVLLLGAYPQRPLCRTKAMSL-------------------------THYEKLGAGINA 749 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS 961 + + D++D+ + + + V + V+ +K A ++ L K + Sbjct: 750 MVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEKYAGGEFDVILPPEKNSGT 809 Query: 962 EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL 1021 + + L + A++ V K + + Sbjct: 810 GKFKALNPDGVAGKGALVQQYDVLVNKFTPVAGGDP------------------RPAPLV 851 Query: 1022 KHEFEKKLEAKRRKITQGD-DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080 + + GD D + V + +KV R +PGD Sbjct: 852 YKYPQPAVVDHVIISPPGDYDRSLDVDQKIKVVTREVRPPEPGD---------------- 895 Query: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK 1140 SR G K L Sbjct: 896 ---------------------KFSSR-----------------HGQKGVVGLIVNGVDMP 917 Query: 1141 LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK 1200 E + ++ E++ +G F G I + L Sbjct: 918 FNERGMCPDMIMNPHGFPSRMTVGKLLELVCSKAAALRGSMGDGTAFGGESADSISQQLL 977 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 G+ Y G TGE + V G +Y +L H+V DKMHARSTG S++T+QP Sbjct: 978 SFGYNYHGKDVFYSGITGELMQGYVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTE 1037 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD-------DVN---GRTKMYKNIVD 1310 G+++ GG R GEME + YGA+ L E L + SD V G Sbjct: 1038 GRSRSGGLRVGEMERDCMVGYGASNLLNERLLISSDMFTADICHVCGNLGYNNRCTYCKT 1097 Query: 1311 GNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + MP +F +L++E++ +G+++ L Sbjct: 1098 KGTTSKVNMPYAFKLLIQELQGMGVSLRL 1126 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 73/483 (15%), Positives = 141/483 (29%), Gaps = 54/483 (11%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY-SGNSE 67 + RK P ++ + +L+ + SF IE + + L S I+S + Sbjct: 14 EYQRKKLEMLPALMGMRGILNHHIASFDHLIEVELQRIL-LNE---SNVEIKSTVDPDFV 69 Query: 68 LQYVSYRLGEPV-----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 ++Y + R+ P QEC+IR +TY + V ++ +R Sbjct: 70 IRYQNIRICRPQEIVGKGHIPKLVTPQECRIRDMTYRGDMIVDVQYTSRDRSRA-----M 124 Query: 117 IKEQEVYMGEIPLM------------------------TDNGTFVINGTERVIVSQLHRS 152 + E++V +G IP+M G F+I G E+V + Q +S Sbjct: 125 LVEKDVKIGTIPIMLKSKCCNLYRKTREELVNMRECPLDPGGYFIIKGVEKVCLVQEQQS 184 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRA 212 + S V + + F + +P ++L+A Sbjct: 185 KNRVIIEADEHGNISAHVQSKTHYSISKCA---VTFKKGSIVLTHRSFTEDIPIIVVLKA 241 Query: 213 LNYTTEQ-ILDLFFEKVIFEIRDNKLQME--LVPERLRGETASFDIEANGKVYVEKGRRI 269 L +Q I F+ E L+ + + + E + E Sbjct: 242 LGLENDQHITQCIGTLPEFQKILFPCFEEARLLNVVTQNDALQYIGEKRKETVWEAEETQ 301 Query: 270 TARHIRQLEKDDVKLI-EVPVEYIAGKVVAKD-YIDESTGELICAANMELSLDLLAKLSQ 327 + R + + V + +I V KD + + L Sbjct: 302 QRQVNRSKADKAAEFLANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDTSLLD 361 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 F + E L +A+ + P + Sbjct: 362 ERDFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLSRKDSTRPFNVKQLMESKME 421 Query: 388 LFFSEDRYDLSA-VGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID 446 + + R +S+ +K + + LS + +M +L +V Sbjct: 422 VIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRLASSFEKTRKVSGPR 481 Query: 447 HLG 449 L Sbjct: 482 SLQ 484 >UniRef50_C5LSL6 DNA-directed RNA polymerase n=5 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSL6_9ALVE Length = 1255 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 190/1292 (14%), Positives = 367/1292 (28%), Gaps = 234/1292 (18%) Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLP 205 + Q R V + Y+ + L + + + +P Sbjct: 100 LHQPIRGEDVLDPRLLPTHCRQAHITYSGELSATVNVSLG---TGEPPVQMARVPLGLVP 156 Query: 206 ATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFDIEANGKVY 262 + A + + + R + + L ++F + + Sbjct: 157 IMVRSEACHLHGMPPSKMVQCGEDPDERGGYFIVNGNEKVIRLLIMPKSNFPVALYRPSF 216 Query: 263 VEKGRRITAR-HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI--------CAA 313 +G +A + + D+ V + Y + LI A Sbjct: 217 SNRGPLYSAYAVQMRSMRPDLTTQTVTMHYRKDGTCWVRFTYLKNEYLIPLMLLLKCLAP 276 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + S L +L G + + + + R AL + Sbjct: 277 DELNSERSLFELLCDGLMADTFVAERVTCMLEQMRTHPELKHVHSREDALYYLGSKFEVV 336 Query: 374 EPPTREAAESLFENLFFSEDR-----YDLSAVGRMKFNRSLLREEIE--GSGILSKDDII 426 R A SL +D +V R + +L + G D ++ Sbjct: 337 FREKRGAGVSLDGIALEVDDAAMSPVEKSVSVARRLLDSLMLVHCPKGAEGGKAKVDCLV 396 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD- 485 + +KL+ + G D+ D + + + G++ + L ++ L+ Sbjct: 397 LIFRKLMALVRGDIAPDNADAMDVQELLLPGQLFGALLKEVLQSSLLRLEGALAKKSRQA 456 Query: 486 -------------TLMPQDMINAKPISAAVKEFFGSSQ--------------LSQFMDQN 518 L+ + ++ ++ F + + D+ Sbjct: 457 QVGKGRAPTVLSAELIRNTFMGVCDVTKRMESFLATGNITSRSGLDLQQTTGFTVVADKL 516 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVY 578 N ++H R A+ G +E VR + P +G +CP+ TP+G GL+N L+ Sbjct: 517 NAYRYLSHFR---AVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHLAAP 573 Query: 579 AQTNEY-GFLETPYRKVTDGVVTDEIHYLSAIEEGNY-VIAQANSNLDEEGHFVEDLVTC 636 Q E + + + + + + + + A N+ + +G + + Sbjct: 574 CQPVVRIASPEGVIPGLEEELASLGVQLVRSSKTSTANYGAGENAYVTLDGRVLGKVARS 633 Query: 637 R--------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 R + + +++ Q + L F R + Sbjct: 634 RLEAVAEELRRLKIDKDCPGVPADLEIVACQTPASFEGLWLFTGPCRMVRPV-------- 685 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 ++ LV G V + T I +K E+ P Sbjct: 686 -RDLATGNEELV--GPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISMLS 742 Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 + P++ Sbjct: 743 ---------------------------------------------------VIAGLTPFS 751 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 +N + +++++ ++ K P V LS+ + Sbjct: 752 NHNQSPRNMYQCQMLKQTMAIPYLNHPYRTDNKVYK----ITYPQFPMVRTTVLSEANFD 807 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS--- 925 + A+ D++D+ + Sbjct: 808 -------------------------VKPAGTNAIVAVIAHSGFDMEDALIISKGSYDRGF 842 Query: 926 --GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 G+V +V K + + + + ++ L+ I + G Sbjct: 843 KHGSVYKTKVINCP--PKGTVGSRLAQFRADNHSVKGEKVVKDLDYDGIPYIGQQVHEGD 900 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 P R L G E K + ++ + E + + Sbjct: 901 ---------PICRVLNKGTG-EAKLEKYKEGEVAWVEQVNMIGGGGWWGGGAGARNPGGI 950 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 + + + L + R GDK + RHG KGV++ + P DMP+ +G DI+ NP G+ Sbjct: 951 KDGSERMSIKLRLPRNPVVGDKFSSRHGQKGVMAILWPQADMPFSTSGISPDIMFNPHGM 1010 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 PSRM IG ++E G AA G + V+ ++ Sbjct: 1011 PSRMTIGMLIEFMAGKAAALTGMPV------------------------------VNANS 1040 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 F L + D E LK G LY G GE + Sbjct: 1041 FRQYRGKGLLDTEHNNEKDPYAPGDTTAHEYFGETLKKFGYEYLGAEELYSGMHGEPLKT 1100 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + +G +Y +L H+V DK R+TG +T+QP+ G+ + GG RFGEME +L ++G Sbjct: 1101 HIYMGVVYYQRLRHMVLDKFQVRATGPIDPLTRQPVKGRKKHGGVRFGEMERDSLISHGT 1160 Query: 1284 AYTLQEMLTVKSDDVNGRTK-MYKNIVDGNHQME-------------------------- 1316 + L + L SD +I+ H E Sbjct: 1161 SALLADRLLKCSDACEDWVCPECGSILSYAHSPETVKRYSGREAAAQAPICRACSTERGI 1220 Query: 1317 ------PGMPESFNVLLKEIRSLGINIELEDE 1342 +P F + E S+ I + L + Sbjct: 1221 EVRCAAVTLPYVFRYMSAEFASMNIRLRLRVK 1252 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 161/1177 (13%), Positives = 335/1177 (28%), Gaps = 235/1177 (19%) Query: 28 LSIQLDSFQKFI-----EQDPEGQYGLEAAFRSVFPIQSYSGN-SELQYVSYRLGEP--- 78 + +DSF F+ + GL S + + G L +P Sbjct: 47 VKPHVDSFNLFVITGLTPEATNEILGLLPDDISPAEMTWHDGTTVRCWLSDLSLHQPIRG 106 Query: 79 ------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 C+ +TYS L + + + E P + V +G +P+M Sbjct: 107 EDVLDPRLLPTHCRQAHITYSGELSATVNVSLGTGEPPVQMAR------VPLGLVPIMVR 160 Query: 133 N------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSG 168 + G F++NG E+VI + F + + S+ Sbjct: 161 SEACHLHGMPPSKMVQCGEDPDERGGYFIVNGNEKVIRLLIMPKSN-FPVALYRPSFSNR 219 Query: 169 KVLYNARIIPYRGSWLDF-------EFDPKDNLFVRIDRRRK---LPATIILRALNYTTE 218 LY+A + R D + +VR + +P ++L+ L Sbjct: 220 GPLYSAYAVQMRSMRPDLTTQTVTMHYRKDGTCWVRFTYLKNEYLIPLMLLLKCLAPDEL 279 Query: 219 QILDLFFEKVIFEIRDNKLQ---MELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 FE + + + + + E++R + + G + R Sbjct: 280 NSERSLFELLCDGLMADTFVAERVTCMLEQMRTHPELKHVHSREDALYYLGSKF-EVVFR 338 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET 335 + V L +A + D + +E S+ + +L Sbjct: 339 EKRGAGVSLD----------GIALEVDDA------AMSPVEKSVSVARRLL------DSL 376 Query: 336 LFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRY 395 + + + ++ LV I+R + A + + D Sbjct: 377 MLVHCPK---------GAEGGKAKVDCLVLIFRKL---------MALVRGDIAPDNADAM 418 Query: 396 DLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRS 455 D+ + L +E+ S +L + + KK + GKG + Sbjct: 419 DVQELLLPGQLFGALLKEVLQSSLLRLE--GALAKKSRQAQVGKGRAPTV---------L 467 Query: 456 VGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 E+ N F + + D+ M + S + + ++ + Sbjct: 468 SAELIRNTF--------------MGVCDVTKRMESFLATGNITSRSGLDLQQTTGFTVVA 513 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 D+ N ++H R A+ G +E VR + P +G +CP+ TP+G GL+N L Sbjct: 514 DKLNAYRYLSHFR---AVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHL 570 Query: 576 SVYAQTNEY-GFLETPYRKVTDGVVTDEIHYLSAIEEGNY-VIAQANSNLDEEGHFVEDL 633 + Q E + + + + + + + + A N+ + +G + + Sbjct: 571 AAPCQPVVRIASPEGVIPGLEEELASLGVQLVRSSKTSTANYGAGENAYVTLDGRVLGKV 630 Query: 634 VTCR--------SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL----- 680 R + + +++ Q + L F R + Sbjct: 631 ARSRLEAVAEELRRLKIDKDCPGVPADLEIVACQTPASFEGLWLFTGPCRMVRPVRDLAT 690 Query: 681 ----MGANMQRQAVPTLRADKPLVG----------TGMERAVAVDSGVTAVAKRGGVVQY 726 + M++ + + L M+ S ++ ++ G+ + Sbjct: 691 GNEELVGPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISMLSVIAGLTPF 750 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 + ++ + + +M I L R++ P + + Sbjct: 751 SNHNQSPRNMYQCQMLKQTMAIP--YLNHPYRTDNKVYKITYPQFPMVRTTVLSE----- 803 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT-KL 845 + G N VA + +G++ ED++++S+ + + Sbjct: 804 --ANFDVKPAGTNAIVAVIAHSGFDMEDALIISKGSYDRGFKHGSVYKTKVINCPPKGTV 861 Query: 846 GPEEITADIPN---VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL- 901 G N GE + LD GI YIG +V GD + +V KG + E+ Sbjct: 862 GSRLAQFRADNHSVKGEKVVKDLDYDGIPYIGQQVHEGDP-ICRVLNKGTGEAKLEKYKE 920 Query: 902 -------LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 + G + R P G+ + Sbjct: 921 GEVAWVEQVNMIGGGGWWGGGAGARNPGGIK------------DGSERMSIKLRLPRNPV 968 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT----------- 1003 K S Q + + + + + P + + Sbjct: 969 VGDKFSSRHGQKGVMAILWPQADMPFSTSGISPDIMFNPHGMPSRMTIGMLIEFMAGKAA 1028 Query: 1004 ----------DEEKQNQLEQL-------------------AEQYDELKHEFEKKL--EAK 1032 + +Q + + L E + E +F + + Sbjct: 1029 ALTGMPVVNANSFRQYRGKGLLDTEHNNEKDPYAPGDTTAHEYFGETLKKFGYEYLGAEE 1088 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 G+ L + V Y ++ DK R Sbjct: 1089 LYSGMHGEPLKTHIYMGVVYYQRLRH--MVLDKFQVR 1123 >UniRef50_C4QY42 DNA-directed RNA polymerase n=2 Tax=Saccharomycetales RepID=C4QY42_PICPG Length = 1165 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 166/1282 (12%), Positives = 342/1282 (26%), Gaps = 295/1282 (23%) Query: 152 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF--DPKDNLFVRIDRRRKLPATII 209 P V + R+I Y+ ++ I ++P + Sbjct: 86 KPSVAVGDKLSVNRKTLPSECRERMITYKSRFMLKVCWSVNDGPEETEIREAGQIPVMLK 145 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDIEANGKVYVEKG 266 + +L K + + + + +R + + + + +G Sbjct: 146 SNRCHLEKMSPNELVKNKEESDELGGYFIVNGIEKLVRMLIVQRRNHPMALIRPSFGNRG 205 Query: 267 RRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAK 324 T IR + D V G V + ++ + ++ ++ + Sbjct: 206 DSYTQFGIQIRAVRPDQTSQTNVLHYLKDGNVTFRFSWRKNEYLVPVPMILKALVETNDR 265 Query: 325 LSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESL 384 G ET + D + + + L + R T + ++ Sbjct: 266 EIFDGIVGSETSNSFLTDRLELLLRNYKHYKLVSKQETLAYLGDKFRVVFNATPDVSD-- 323 Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 VG+ R +L ++ +++KL + +G D+ Sbjct: 324 -------------VDVGKEVLRRIVLVHLP--DNRDKFRLLLFMIRKLYALVSGDCCPDN 368 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL----------DTLMPQDMIN 494 D ++ + G + + + +++ ++ + Sbjct: 369 PDATQHQEVLLGGFLYGMIIKEKIEEYLASIRLQIQTDINRGYPVNFDEPKYMSRVFQRI 428 Query: 495 AKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISALGPGGLTR 540 + I ++ F + L + ++ N I+H R + G Sbjct: 429 NENIGKKLQYFLSTGNLVSQTGLDLQQVSGYTVVAEKINFYRFISHFRMV---HRGSFFA 485 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 E VR + P +G +CP+ TP+G GL+N L+ + + + KV + Sbjct: 486 ELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKISTEESDVSKVPKVLSKLGV 545 Query: 601 DEIHYL------SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 H ++ ++ ++ + L + +G + +V + Sbjct: 546 SANHVFAAGPQMCCVQLDGKIVGW--CTHEQAKIVADTLRFWKVEGGHGIPLDLEVGH-- 601 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 +P + R P + E + Sbjct: 602 -------------VPPSSRGQYPGLYLFGGRARMTRPV-----RYLPLDKEDIIGPFEQA 643 Query: 715 TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 + P E ++++ +++ +N + Sbjct: 644 YI---------------------NIAVTPEEIESNVHSHVEFSPTNILS----------- 671 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 + P++ +N + ++ ++ T Sbjct: 672 -------------------------ILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVAL 706 Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 ++ +L T P V Sbjct: 707 VHRSDNKLYRLQ----TGQTPIVKANLYDDYGMDNFP----------------------- 739 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 + A+ D+ D+ + + E+ + ++++ Sbjct: 740 --NGTNAVVAVISYTGYDMDDA---------------MIINKSSDERGFGYGTMYKVEVI 782 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQL 1014 + I + F L D +G E + Sbjct: 783 DLADSRRKGDPITQHFGFG-------TDEWPESWKQNLDEDGLPAIGTLVNEGDPIVAYY 835 Query: 1015 AEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGN 1072 + + K + DDL L++V + + R+ Q GDK + RHG Sbjct: 836 DDTLGKTKVKTYHSSEPAYIEEVKLISDDLGDSELQMVTIKYRITRQPQIGDKFSSRHGQ 895 Query: 1073 KGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 KGV S+ P DMP+ E G D+++NP PSRM IG +E+ G A G ++ Sbjct: 896 KGVCSRKWPQIDMPFTETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTP 955 Query: 1133 ----KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 + E + A Sbjct: 956 WKFNEDDTPADFFGEQLISAGYNYHGNEPMYSGV-------------------------- 989 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 +G+ + +G +Y +L H+V+DK RST Sbjct: 990 ------------------TGEE----------LRADIYIGVVYYQRLRHMVNDKFQVRST 1021 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM---- 1304 G + +T QP+ G+ + GG R GEME AL +G A+ LQ+ L SD Sbjct: 1022 GPVNSLTMQPVKGRKRNGGIRIGEMERDALIGHGTAFLLQDRLLNCSDYTQTSICKGCGS 1081 Query: 1305 ------------------YKNIVD--------------------------GNHQMEPGMP 1320 + GN +P Sbjct: 1082 LLNTQTSVPRIGTKAMIHCRRCSTKINDVTAGTTDDMDLWEDGQGNRYTGGNDTTTVAIP 1141 Query: 1321 ESFNVLLKEIRSLGINIELEDE 1342 L E+ ++GI + E Sbjct: 1142 FVLKYLDSELSAMGIRMRYNVE 1163 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 95/315 (30%), Gaps = 69/315 (21%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKF-------IEQDPEGQYGLE 50 M S+ +R + P L ++ + SF + G + Sbjct: 1 MKASFKTLERENRFKNPPTDKSAFPLLEQAVAPHIGSFNALTDGLNGGLLNLAVKDIGAK 60 Query: 51 AAFRSVFPIQSYSGNSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLRV 98 F S P + + +++ + +L +P EC+ R +TY + + Sbjct: 61 TIFDSNDPSRLGNK-LKIRVDAVQLAKPSVAVGDKLSVNRKTLPSECRERMITYKSRFML 119 Query: 99 KLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN------------------------G 134 K+ + + + G+IP+M + G Sbjct: 120 KVCWSVNDGPEETEIREA--------GQIPVMLKSNRCHLEKMSPNELVKNKEESDELGG 171 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FE 187 F++NG E+++ + + + + + Y I R D Sbjct: 172 YFIVNGIEKLVRMLIVQRRNH-PMALIRPSFGNRGDSYTQFGIQIRAVRPDQTSQTNVLH 230 Query: 188 FDPKDNLFVRIDRRRK---LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + N+ R R+ +P +IL+AL T + F+ ++ N + + Sbjct: 231 YLKDGNVTFRFSWRKNEYLVPVPMILKALVETND---REIFDGIVGSETSNSFLTDRLEL 287 Query: 245 RLRGETASFDIEANG 259 LR + Sbjct: 288 LLRNYKHYKLVSKQE 302 >UniRef50_D0MW98 DNA-directed RNA polymerase n=1 Tax=Phytophthora infestans T30-4 RepID=D0MW98_PHYIN Length = 1179 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 204/1388 (14%), Positives = 382/1388 (27%), Gaps = 318/1388 (22%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDV 82 + L+S LDSF F+ GL+ A + + PV Sbjct: 40 KLQKLVSPHLDSFNFFLT------EGLDLAVADMCKV------------------PVELP 75 Query: 83 QECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTE 142 + + + + + + P + EQ+ Sbjct: 76 NQHR-----------MDIWIENAQIGYPTTENQITGEQK--------------------- 103 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 ++ R GV + + T + F N+ Sbjct: 104 --LLPSECRQRGVSYTAPLVVTLAR-------------------SFGGSQNVERLQRVVG 142 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER---LRGETASFDIEANG 259 ++P + + + DL + L+ + Sbjct: 143 EIPIMVRSKRCHLNGMAPTDLVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRR 202 Query: 260 KVYVEKGRRITAR-HIRQLEKDDVKLIEVPVEYIAGKVVAKDY-IDESTGELICAANMEL 317 + +G T + K D + V V Y+ + + + + ++ Sbjct: 203 GAFANRGDLYTELAVFMKCVKRDQSAVTVTVHYLQDGNATVRFGVKKQEFMIPVGLVLKA 262 Query: 318 SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPT 377 L + R + T I + R AL + + R P Sbjct: 263 LYPLTDREIYERVLRGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYV 322 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI--EGSGILSKDDIIDVMKKLIDI 435 + + VG + L E + + +++KL Sbjct: 323 YDN--------------MNNVEVGSKLLDDFLFVHIPKGEKGRTQKVELLCLMLRKLYAF 368 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDT--------- 486 G D+ D + N + G + + L A++ + + Sbjct: 369 AKGDVPEDNADSVMNHELLLPGHLYLMIMKEKLQESLVAMRANILKETQNKKRAVVMDQV 428 Query: 487 LMPQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISA 532 + + I A+ F + L + ++ N +H R + Sbjct: 429 FLRKMWERTPNIGNAMTYFLNTGNLRSSSGLDLLQIAGYTIVAEKLNYYRYFSHFR---S 485 Query: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592 + G E VR + P +G +CP+ TP+G GL+N L+V + + + Sbjct: 486 VHRGQFFTEMKTTAVRKLLPDSWGFLCPVHTPDGSPCGLLNHLAVECELVCHPAFKADDY 545 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY 652 + + + L I Y A+ L ++ ++ + G + ++ Sbjct: 546 LQQEVKLARFLASLGMIPTSGY----ADGALIVPYSYLPVMMNGKVLGGAPAEVCKRIAE 601 Query: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712 + + S DAN + + P G Sbjct: 602 VLRKVKSAKSSEER--------DANGIVSNLE---VCLILPTRGGPFPGL---------- 640 Query: 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772 Y+ A + +M I M V Sbjct: 641 -------------YLSADAARMSRPVKQMDTKRIE----------------YIGPMEQVF 671 Query: 773 LGEPVERGDVLADGPSTDLGEL-ALGQNMRVA-FMPWNGYNFEDSILVSERVVQEDRFTT 830 + + D+ P+T E+ VA P++ YN + ++ ++ T Sbjct: 672 MDIACTKDDIR---PATTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTP 728 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 H ++ ++ IP V L + Sbjct: 729 AHSIVHRSDNKMYRIQS----PQIPIVQNERLREYQLD---------------------- 762 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 + + A+ D + D + + E+ + + Sbjct: 763 ---EYPLGTNAVVAVISYTGFD---------------MEDAMILNKSSYERGFGHASVYK 804 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 Q D+S + A + G + KL RD + +G Sbjct: 805 ----QLTVDISSNGKQGSATSKKYFSNIKTDGSGDY-CSTKLDRDGFPHIGQVVNHGDPV 859 Query: 1011 LEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + E ++ E + + G+ + + L R GDK + Sbjct: 860 ASWIDETTGLPSVQKHKESEPAIIEQVNMIGNSSSSSEFTKASIKLRFCRNPTIGDKFSS 919 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KGV+S + P DMP+ E+G DI++NP H + +G I Sbjct: 920 RHGQKGVMSILWPQADMPFSESGISPDIIINP---------------HAFPSRMTVGMLI 964 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 +M A GA + +D + F E R+ Sbjct: 965 ESM----------------AAKTGALKGKYMDATPFQFSEKDRV---------------- 992 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 LK G LY G +G + + +G +Y +L H+V DK R+T Sbjct: 993 ---IDYFGSQLKEHGYNYMGSEPLYSGISGTVMQADIYIGVVYYQRLRHMVSDKSQVRAT 1049 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----- 1303 G + +T+QP+ G+ + GG R GEME +L A+G A+ +Q+ L SD Sbjct: 1050 GPMNSLTRQPVKGRKKGGGIRLGEMERDSLLAHGCAFLVQDRLLNCSDKHIATVCTNCGS 1109 Query: 1304 -----------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLG 1334 G MP F L E+ ++ Sbjct: 1110 LLSNATQRSTVETAGQGEIAVAMKSKTQWYCTVCQTGESCQPVAMPYVFRYLANELAAMN 1169 Query: 1335 INIELEDE 1342 I + L + Sbjct: 1170 IKMSLTLK 1177 >UniRef50_Q23G41 DNA-directed RNA polymerase n=3 Tax=Oligohymenophorea RepID=Q23G41_TETTH Length = 1226 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 213/1415 (15%), Positives = 406/1415 (28%), Gaps = 313/1415 (22%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN--------- 65 + + L S Q+ S+ FIE P + R + + Sbjct: 31 WKIIDEYFKDNGLCSHQIKSYNHFIESLPLIMEDFKIEVRPTENYMNSNKKEQQIRSQTS 90 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 L + R P P + + + Q++Y Sbjct: 91 YTLTFDRPRKPLP----------------PQKFHMERTFGWGRRGQDAQSSSHAQKIY-- 132 Query: 126 EIPLM---TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS 182 P+M +D FV E I QL R+ +++ + +S Sbjct: 133 --PMMARISDLDYFV----EIKIPVQLVRTIKHPDGTEQKELITSR-------------- 172 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 D NL KLP + + E + Sbjct: 173 ------DKNQNLITLF----KLPVMVQSMYCSLAGENLEGRIKHGECQF----------- 211 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDV------KLIEVPVEYIAGKV 296 + F I+ + KV + + R +KD Sbjct: 212 -----DQGGYFIIKGSEKVIIAQERMAFNFVYVFQQKDPKMPWIAEIRSIRDKTNAVQSK 266 Query: 297 VAKDYIDESTGELICAANMEL--SLDLLAKLSQSG-HKRIETLFTNDLDHGPYISET--- 350 A + A + + + L G + + + + Sbjct: 267 FALKLKLRDGEYQLYARCKLINEDIPIFVLLKALGCVESDKEMMERIFYNLKDPKNEQMM 326 Query: 351 -------LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRM 403 L N++ AL+ I R ++ ++ + Y L +G Sbjct: 327 EMLRSSLLLAQHCNNKREALIFIG--YRINATTNYRGSQEAMQSAEDTLKLYLLPHIG-- 382 Query: 404 KFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ 463 E I +++KL++ GK + DD DH G +R+ G + Sbjct: 383 ---------TQESDNDKKLFFIGYMIQKLLNAALGKTQEDDRDHYGKKRLDMAGALISQL 433 Query: 464 FRVGLVRVERAVKERLSLGDLD--------TLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 F+ L ++ K+ L D + D+ + K IS ++ + Q Sbjct: 434 FKERLRIFQKNAKKNLQQKINDISRDAQKSLNVIVDIFDHKLISDHIRLALATGNWGQTA 493 Query: 516 D--------------QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 D + + ++H RR++A R +H THYG +CP Sbjct: 494 DGEVVKTGVAQVLKRDTSLFATMSHMRRVNAPMKSAA----KLARPRQLHNTHYGLICPA 549 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYR---KVTDGVVTDEIHYLSAIEEGNYVIAQ 618 ETPEG IG++ +LS+ AQ + + + ++ + + +I L + Sbjct: 550 ETPEGQKIGMVKNLSLLAQVSLGLSSQDNLKIQEQLEEQINQFDILNLKLEKIPYQTKVF 609 Query: 619 ANSNLDE----EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 N N ++ R + FS V + ++ + + + Sbjct: 610 FNGNWIGFTETPEQIIDVFKEIRRLQKIDGFSI--VRDIINKEIRIYTDQGRGMRPVFTV 667 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 + + ++ + E G ++ +D Sbjct: 668 QEIC------EGKNRLKITKSKLYAILQQFEGKA------FQKLIDEGFIELLDVEEEEG 715 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + ++ D Y+ R+N P+ LG Sbjct: 716 ALIAVDIN------DFYHTDDPRRTN-----------------LPFTHCEIHPAMILG-- 750 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 + + +P+ +N + + ++ + R L I Sbjct: 751 -----VCASVIPFGHHNQGPRNTLQSAMGKQAMG----LNSTNFHMRLDTLCHILYYPQI 801 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 +L + I + AI + + Sbjct: 802 ALASSKSLQYITAKDIP-------------------------IGSNAVVAIACFTGYNQE 836 Query: 915 DSSLRVPNGVSGTVIDVQVF-------TRDGVEKDKRALEIEEMQLKQAKKDLSEELQIL 967 DS + + + + ++ ++ + + I K+ S L Sbjct: 837 DSIIINQSAIDRGLFRSILYRTYKTTEKKEHMGLNPVIEHIRFPDEKKTIIPASYSFLKL 896 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 + + V K+ +LP+ +KQ + L + E+ + Sbjct: 897 DYDGIIPPGTQVTGEDVLIGKVVELPKTE-------GSDKQYKDVSLGCRRSEIGYVDTV 949 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 L + + IVKV L R Q GDK A RHG KG ED+PY Sbjct: 950 ILSEDK-----------DGMYIVKVKLRSNRIPQIGDKFASRHGQKGTCGMTIRGEDLPY 998 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 + G ++V+NP +PSRM IG ++E + G +A ++ + + Sbjct: 999 NIEGIIAELVINPHCIPSRMTIGHMIEGLNSKLSSLKGIWGDATPFSGIKLQDIASELHT 1058 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + P + Sbjct: 1059 YGYQRYGNEVLYN--------------------------------------------PYT 1074 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G + + G + +L HLVDDKM++RS G + +QP G+++ GG Sbjct: 1075 G----------MRLSTQIYYGPTFYQRLRHLVDDKMYSRSRGPVVAIVRQPTHGRSRGGG 1124 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM------------YKNIVDG 1311 RFGEME + A+G + L+E SD V R + G Sbjct: 1125 LRFGEMERDCIIAHGTSNFLKERTFGVSDQFRTHVCSRCGLFAKADVTNHKYDCTGCSQG 1184 Query: 1312 N----HQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + ++ +P + L++E+ ++ I ++ + Sbjct: 1185 DKKHYKIVQVYLPYAAKQLIQELMAMHIVPRIKVD 1219 >UniRef50_P23579 DNA-directed RNA polymerase subunit beta n=2 Tax=Euglena RepID=RPOB_EUGGR Length = 1082 Score = 583 bits (1502), Expect = e-164, Method: Composition-based stats. Identities = 288/1227 (23%), Positives = 511/1227 (41%), Gaps = 174/1227 (14%) Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVR 197 +NG RV + L F K + L + I + G + F+ D Sbjct: 2 VNGC-RVRSNLLDIQRNSFRSFLKK---GLVEELRKIKDIAHEGFRISFQTDNVKY---- 53 Query: 198 IDRRRKLPATIILRA---LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 ++ K+ A L+ + + +++ + + NK + L E +F Sbjct: 54 --KKPKISAEFALKNGETYSLSVHIPVEVTYN--NMFLVRNKYIL-FAKIPLMTEKGTFI 108 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 N ++ V + R + + + + I + + + + Sbjct: 109 FNGNKRIMVNQIIRSPGVYFEKNRYN----DSIFATLIPTFGSWLTFKIDQDEGIFVKVD 164 Query: 315 MELS-LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 + + L+ L G R + + P ETL+ + E Y++ P Sbjct: 165 KIKTAIPLINFLKCLGLSRKKFFLYL---NDPIFIETLQESESYGIRLEFFEFYKIFFPN 221 Query: 374 EP-PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR-EEIEGSGILSKDDIIDVMKK 431 E A + F +YDL VGR + N + R E + + L +D++ + Sbjct: 222 EVNVRFGNARKFLRSKFMDPRKYDLGEVGRFRVNTKIYRSEFFQSNRTLQPEDVLGIAHY 281 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL----SLGDLDTL 487 LI+++ G D+ID L N+ +RS+GE+ ++QFR+ L +E ++KE+L T Sbjct: 282 LIELKKGMIPFDEIDDLKNKLVRSIGELLQSQFRIILNELESSLKEKLIFLYKNPSEKTF 341 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 N+ I+ +++FF + LSQ +D N LSE+THKR++S GP GL +ER +V Sbjct: 342 RLSRFFNSYFITNRIRKFFSVNPLSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDV 401 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV--TDEIHY 605 R+++ + YGRVCPIET EG N GLI SL+ + ++YGFLE+P+ KV G + I++ Sbjct: 402 REINTSQYGRVCPIETSEGKNAGLILSLAKDVRVDKYGFLESPFYKVLRGKIETNKGIYF 461 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 +S+ +E + +A +F Q + +D Sbjct: 462 ISSAQEKYFTVAP-----------------------FDVFRSSQSNLLD----------- 487 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 L+G + + + + ++ + G+V Sbjct: 488 -----------KNKLLGVKRSKIFSYSFSKNIDFISISTDQF---------TSLGTGLVP 527 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 +++ + + M ++P + G Sbjct: 528 FLEHNDANRVLMGSNMQRQSL---------------ILLEKEVPFIKTGREALINRESDA 572 Query: 786 GPSTDLGELALGQNMRVAFMPWNGY--NFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 + +++ + Y N E ++ + ++ + + Sbjct: 573 TVLAKSSGKVIYSSLKKIVIQEEEYCANIE---FFNKNYSFFNLLGCLN-EISQKNFKLI 628 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 K ++I + + IV+ G V G I + + + +L Sbjct: 629 KKVNQKIYFLESPKKSNHGVYIQKIPIVHEGEWVRKGQI-IADGMSTLRGGICLGKNVLV 687 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS-- 961 A G + + +D+ + +S ++ +FT ++K K + +E + + + Sbjct: 688 AYLGWEGYNFEDAVI-----ISERLVFEDIFTSIHMKKFKTFIVNDEKKGENISMFIPNA 742 Query: 962 --EELQILEAGLFSRIRAVLVAGGVEAE----KLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 + ++ L+ +I + + A V KL P+++ L ++ + + L Sbjct: 743 SLKTIKNLKNNGIIKIGSEIKAQDVLIGRIKVKLKNTPKNKMLIAFFGNKVR--KDVSLR 800 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 + ++ K+ + V +++A KRRIQ GDK+AGRHGNKG+ Sbjct: 801 SPRSLVGIVTSVEILCKKSNCS------------VLIHVAEKRRIQIGDKIAGRHGNKGI 848 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 ISKI P DMP+ +GTPVD++LNPLG+PSRMN+GQ+ E+ L +++ + ++ + Sbjct: 849 ISKIVPSIDMPFLPDGTPVDMILNPLGIPSRMNVGQVFESLLNLSSLFLKERYKIQPFDE 908 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 + + + A R K D Sbjct: 909 VQTSMNSKSFVYKKLNEARKRTKKD----------------------------------- 933 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVT 1255 L + G+ LYDGR F+ PV GY Y+LKL H+V DK+HAR TG YS VT Sbjct: 934 ----WLFNPNYPGKAFLYDGRNCRPFDHPVAFGYAYILKLIHMVKDKIHARVTGPYSSVT 989 Query: 1256 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQM 1315 QQPL GK++ GGQRFGEMEVWA+E +GAAY LQE+LT+KSDDV R++ ++++G + Sbjct: 990 QQPLRGKSKNGGQRFGEMEVWAIEGFGAAYLLQELLTIKSDDVLNRSEALFSLINGTYFS 1049 Query: 1316 EPGMPESFNVLLKEIRSLGINIELEDE 1342 +P +PE+F + + E++SL I+I++ Sbjct: 1050 KPNIPEAFKLFILEMQSLCIDIKIFTN 1076 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 66/383 (17%), Positives = 139/383 (36%), Gaps = 36/383 (9%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQEC 85 LL IQ +SF+ F+++ GL R + I Q + + +P + Sbjct: 10 NLLDIQRNSFRSFLKK------GLVEELRKIKDIAHEGFRISFQTDNVKYKKPKISAEFA 63 Query: 86 QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVI 145 G TYS + + + + ++ + + +IPLMT+ GTF+ NG +R++ Sbjct: 64 LKNGETYSLSVHIPVEVTYNNMFL-------VRNKYILFAKIPLMTEKGTFIFNGNKRIM 116 Query: 146 VSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK-L 204 V+Q+ RSPGV+F+ ++ A +IP GSWL F+ D + +FV++D+ + + Sbjct: 117 VNQIIRSPGVYFEKNRYNDSIF------ATLIPTFGSWLTFKIDQDEGIFVKVDKIKTAI 170 Query: 205 PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE-----ANG 259 P L+ L + ++ + + E + E F E N Sbjct: 171 PLINFLKCLGLSRKKFFLYLNDPIFIETLQESESYGIRLEFFEFYKIFFPNEVNVRFGNA 230 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYI-DESTGELICAANMELS 318 + ++ ++ L + + + + ++ G ++ Sbjct: 231 RKFLRSKFMDPRKY--DLGEVGRFRVNTKIYRSEFFQSNRTLQPEDVLGIAHYLIELKKG 288 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 + ++ +K + ++ I L + L+ +Y+ Sbjct: 289 MIPFDEIDDLKNKLVRSIGELLQSQFRIILNELE----SSLKEKLIFLYK----NPSEKT 340 Query: 379 EAAESLFENLFFSEDRYDLSAVG 401 F + F + +V Sbjct: 341 FRLSRFFNSYFITNRIRKFFSVN 363 >UniRef50_A9VCU6 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis RepID=A9VCU6_MONBE Length = 1136 Score = 581 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 193/1262 (15%), Positives = 367/1262 (29%), Gaps = 271/1262 (21%) Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW-------LDFEFDPKDNL 194 + I + + + + S+ LY A R ++ ++ E + + N Sbjct: 79 NKTISLSIAKCRLEQPTVSRKEGFSTANALYPAECRQRRVTYKGDFYLTVNIEVEGQPNA 138 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + +LP I+ A +L +K + F Sbjct: 139 WQVERYVGQLPIMIMSNACRLNGLSPRELVMKKEEAQEMGG----------------YFI 182 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 I N K+ I V Y + T + + Sbjct: 183 INGNEKIVRMLLMPRRNHPICLDRPSYVNRGPGYSSYGVQMRCVRPDQSAQTVVVHYKND 242 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR--LSALVEIYRMMRP 372 +L + Q I L I + ++ + + + R Sbjct: 243 GTCTLGFSYRKQQYLIPAILLLRALSGVSDRQIFMDIVRGDMSNSFLVERVEIMLRQYTR 302 Query: 373 GEPPTREAAESLFENLF-----FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 +++A + NLF + D+ A + F R LL ++ Sbjct: 303 ERLFSQQACLAYLGNLFKVILNLHPETSDVEAA-HILFKRVLLVHIAPNDFQAKYRVLVG 361 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA----ENQFRVGLVRVERAVKERLSLGD 483 +++++ + G + D+ D + + G + + Q LV +++ V+ L +G Sbjct: 362 LIRRVYSLAAGSTQPDNADSQMLQELLLPGHIYCAFVKEQMSEYLVAMQKLVQTDLRMGK 421 Query: 484 LDTLMPQDMINAKP------ISAAVKEFFGSSQL--------------SQFMDQNNPLSE 523 + + + I + ++ F + L + D+ N L Sbjct: 422 TVDVSNTNYLQTDVMRRCPDIGSKLEYFMSTGNLNSPTALDQMQVTGFTIVADKLNFLRY 481 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ++H R + G + VR + P +G +CP+ TP+G GL+N L+ + Sbjct: 482 LSHFR---CVHRGAYFSQMKTTAVRKLLPEAWGFLCPVHTPDGAPCGLLNHLARHCLPPT 538 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 + G+ + + + + +L G Sbjct: 539 EPVDISSLPPTLLGLGMIAVSEQPHF---HCLDVLLDGHL--VGFLA------------- 580 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 Q D V Sbjct: 581 -----------------------------------LEQAPKFAEQLRILKIRDDERVPNT 605 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 +E A G+ + +R++ V M T++ S + Sbjct: 606 LEIAYVAPRAAGQF---PGLYLFSTPARLLRPVRNLRMKS----------TEFVGSFEQV 652 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA-FMPWNGYNFEDSILVSERV 822 +N G +T + G VA F P++ +N + ++ Sbjct: 653 YLN---------VAVDPKEFVSGETTHMELTKHGFLSIVASFTPFSDFNQSPRNMYQCQM 703 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 ++ + ++ + P V A ++ Sbjct: 704 GKQTMGVPGQAIKYRADNKLYS----LNSGQTPLVRPRAYNEYGVDNFP----------- 748 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 + + D++D+ + V + +V ++ Sbjct: 749 --------------VGNNAIVCVIAYTGYDMEDAMILNKGSVERGFMHARVLATKVIDLT 794 Query: 943 KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 ++ VL K++KL D +G Sbjct: 795 EKTKSRVCHYYFG----------------------VLPKDRSANLKMEKLDADGLPRVGA 832 Query: 1003 TDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 +E + +E + E + + + V + L++ R Sbjct: 833 HIKEGDALYSYIDGSTNESRTEIYRG-------------EPAIIDRKVTIRLSINRNPII 879 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK A RHG KG++S++ P DMP+ E+G DI+ NP H + Sbjct: 880 GDKFASRHGQKGILSQLWPTADMPFSESGIIPDILFNP---------------HGFPSRM 924 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 IG I +M A A D + F E Sbjct: 925 TIGMLIESM----------------AGKSAALHGVAHDATPFMFNE-------------- 954 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 + E L+ G R+Y G TGE+FE + +G ++ +L H+V DK Sbjct: 955 -----NERAVDYFGEQLRTAGYNYHGHERMYSGITGEEFEVDIFIGNVFYQRLRHMVSDK 1009 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DV 1298 R+ G + +T+QP+ G+ + GG RFGEME AL +G A+ LQ+ L SD DV Sbjct: 1010 FQVRTQGPVNSLTRQPVKGRKKNGGIRFGEMERDALLGHGTAFLLQDRLFNCSDRSEVDV 1069 Query: 1299 NGRTKM-------------------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + + DG + +P F L E+ ++ I + L Sbjct: 1070 CRKCGSLLSPYSSEKTAANRIRVLRCRGCSDGGEVVRVNLPYVFRYLTAELSAMNIRLSL 1129 Query: 1340 ED 1341 + Sbjct: 1130 DV 1131 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 90/273 (32%), Gaps = 65/273 (23%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS--YSGNSELQYVSYRLGEPV- 79 + + +DSF ++ GLE A + P+ + L RL +P Sbjct: 43 KLKTATAPHVDSFNYMVKH------GLEQAVADLDPLTFVAQNKTISLSIAKCRLEQPTV 96 Query: 80 -----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 EC+ R VTY + + + + + + Y+G++P Sbjct: 97 SRKEGFSTANALYPAECRQRRVTYKGDFYLTVNIEVEGQPNAWQVER-------YVGQLP 149 Query: 129 LMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M + G F+ING E+++ L D+ + Sbjct: 150 IMIMSNACRLNGLSPRELVMKKEEAQEMGGYFIINGNEKIVRMLLMPRRNHPICLDRP-S 208 Query: 165 HSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRRK---LPATIILRALN 214 + + Y++ + R D + + R++ +PA ++LRA Sbjct: 209 YVNRGPGYSSYGVQMRCVRPDQSAQTVVVHYKNDGTCTLGFSYRKQQYLIPAILLLRA-- 266 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 + +F + V + N +E V LR Sbjct: 267 LSGVSDRQIFMDIVRGD-MSNSFLVERVEIMLR 298 >UniRef50_A8B827 DNA-directed RNA polymerase n=2 Tax=Giardia intestinalis RepID=A8B827_GIALA Length = 1235 Score = 581 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 187/1292 (14%), Positives = 388/1292 (30%), Gaps = 205/1292 (15%) Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD 189 + T +I ++++ + S + L Sbjct: 65 IDSLNTTIIKHAPAIVINLSTSKAIKVEIVNLTIKPPSFTPAFARETRANYCGPLHVTLK 124 Query: 190 PKDNLFVR--IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL------ 241 D + + +P + + + + + Sbjct: 125 VSDGPMSKTVVINAGDVPVMVGSKLCLLHGKTREERIRLREDERDAGGYFISNGQDKVVR 184 Query: 242 -VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + L +F + H + + +D V + K Sbjct: 185 LYLDCLSNTPLAFTKYRSLSTI--SEFAPAGVHYKGVREDGHVYSTVIQARKDNFLSVKF 242 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP--TND 358 ID + + L+ L + +++ + + + Sbjct: 243 TID----------GRYIYVPLILVLRALVSTTDKEIYSTI---CTICASAHPKEDGYVSL 289 Query: 359 RLSALVEIYRMMRPGEPPT-REAAESLFENLFFSEDRYDLSAVGRMKF--NRSLLREEIE 415 R+ A++ + R ++ F + DRYDL+ V + LL + Sbjct: 290 RVEAMLRDFHKYRIFSHKACKQLLGGKFRMILSLLDRYDLTDVDCCDLLFEQYLLINIPK 349 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475 + + + +K + + + D D L ++ + G + + L+++ R V Sbjct: 350 EDTRAKFNMMCLMARKCLLLFGSFIKPDSPDLLSSQEALTPGAFFKAEVTSTLIKIMRLV 409 Query: 476 KERLSLG------DLDTLMPQDMINA----KPISAAVK--------------EFFGSSQL 511 + +L I + +P+S+ ++ ++ S L Sbjct: 410 SRNATSTGAIGSYELSNSWISHYIASPKLWRPLSSGLRSLAGPGVMRAYKGHDYSNMSGL 469 Query: 512 SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGL 571 S D+ N + + H R + G +R ++P YG C + TP+G G+ Sbjct: 470 SVLADRINYVRFLAHFR---CINRGNAFATHKITSIRKLYPESYGFQCAVHTPDGAPCGI 526 Query: 572 INSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN---SNLDEEGH 628 + L A T ++ S + + + LD Sbjct: 527 LTHLCYKATV-LSSTPTTDQIANLFILLAQFGLSPSLSDIYSLCVVLNGTILGYLDTNER 585 Query: 629 ---FVEDLVTCRSKGESSLFSRDQVDYMD-------VSTQQVVSVGASLIPFLEHDDANR 678 V + + K +F +V +++ + + + N Sbjct: 586 AIQLVACIRAAKVKS--IIFPYTEVVFIEKGNKDHLFPGIYMNTSMGRFYRPVHSLTNNS 643 Query: 679 ALMGANMQRQAV-PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN 737 +++ + + D +G + + S ++ G +V + D ++ + Sbjct: 644 PEYITPLEQIFLQIAIYGDDVRLGVTTHQEITPTS---LLSILGLLVPFSDHNQSPRNMY 700 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 E +M GI NL + + + + P L G Sbjct: 701 ECQMLKQTMGIPCRNLAY--KYDTKSYLLTTPQKPLVRNAI------IHDIGGFDTHPTG 752 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD---- 853 N+ VA + Y+ ED+ L+++ ++ F D KL T Sbjct: 753 TNLVVAVSAYTSYDMEDAALINKASLERGLFHGTVYSVHDIDCYDDKLMRYMRTVATAVP 812 Query: 854 ---------IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 + ++ E ++LDE G+ +GA ++ G + P + Sbjct: 813 YLKRSPDYIVTHMDENYDTELDEDGLPPVGAYLSHGSVFYQTYDPTKQ------------ 860 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL 964 S ++ + G V V V + + + Sbjct: 861 ----------CYSTKLYHHEPGFVEKVIVIHKSAAKGEYWTDN----------------- 893 Query: 965 QILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE 1024 + + + AG + LD D + + N+ Q A Sbjct: 894 ---DIATKKKRDSSFPAGDSNSSNLDNDASDDEISNQPGSGSESNEDNQTATPRSHASKA 950 Query: 1025 FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 E+K + + + + + ++ V++ + R GDK+A RHG KG++ D Sbjct: 951 -ERKSSRQLQTRARTESSSLHFIQRVRIVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTD 1009 Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MP+ +G D+++NP PSRM +G ++E+ D +++ Q + + Sbjct: 1010 MPFTSSGIVPDLIINPHAFPSRMTVGMLIESLASKIGVHYADFVDSSPFQWSDERR---- 1065 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD- 1203 E L Sbjct: 1066 ----------------------------------------------AIDVFGEQLLKTGQ 1079 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G +Y TG+ + +G +Y +L H+V DK R+ G +T+QP+ G+ Sbjct: 1080 FNRYGSEVMYSAITGDPMPADIFIGVVYYQRLRHMVSDKYQVRAEGPSDKITKQPIKGRK 1139 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK----------MYKNIV 1309 + GG RFGEME AL A+GA +L+ L +SD V + + Sbjct: 1140 RGGGLRFGEMERDALLAHGAMASLRGRLCTESDATEHVVCAACGSLLGMQLGGSVCRECK 1199 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 H +P VL ++ ++G+ + Sbjct: 1200 ATGHGRLIQIPMVLLVLANDLAAMGVRMRFNV 1231 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 21/136 (15%) Query: 28 LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGNSELQYVSYRLGEPVFDVQE 84 +S ++SF FI+ + I S S +++ V+ + P F Sbjct: 54 VSAHVNSFNDFIDSLNTT------IIKHAPAIVINLSTSKAIKVEIVNLTIKPPSFTPAF 107 Query: 85 CQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT--- 141 + Y PL V L++ K + G++P+M + +++G Sbjct: 108 ARETRANYCGPLHVTLKVS---------DGPMSKTVVINAGDVPVMVGSKLCLLHGKTRE 158 Query: 142 ERVIVSQLHRSPGVFF 157 ER+ + + R G +F Sbjct: 159 ERIRLREDERDAGGYF 174 >UniRef50_A3BQ32 DNA-directed RNA polymerase n=77 Tax=Magnoliophyta RepID=A3BQ32_ORYSJ Length = 1257 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 195/1384 (14%), Positives = 405/1384 (29%), Gaps = 322/1384 (23%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 L+S Q++S+ F+ GL+ F S+ + EP Sbjct: 133 SFFRETRLVSHQINSYNDFVSH------GLQKMFDSLDEVT---------------VEPD 171 Query: 80 FDVQECQI--RGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 +D + R T RV+L ++ + + V+ +K + + + MT + Sbjct: 172 YDPSKKVGPWRHATIKFG-RVELEEPVFWVDNCDLDVETLKLKPKH-ARLQKMTYSSKMK 229 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR-IIPYRGSWLDFEFDPKDNLFV 196 + T +V + K +G+ Y R I W+ Sbjct: 230 VEMTVQV------------YSLHKSDKAKTGEDPYIQRKDIMKETKWVTI---------- 267 Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 KLP + ++ + + ++ + E+ + Sbjct: 268 -----GKLPVM------------ESECEYDFGGYFLIKGMEKVFVAEEQRCLSRIWINDS 310 Query: 257 ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 + ++ Q+ ++ + + V KV+ ++ Sbjct: 311 PTWEACYQR---------SQIRREKISIKPVQSNDGFRKVINLYFLGA------------ 349 Query: 317 LSLDLLAKLSQSGHKRIET------LFTNDLDHGPYISETL-----RVDPTNDRLSALVE 365 ++ + G + + D IS T+ + + A Sbjct: 350 -TIPIWIMFFALGVSSDKEAFDIIDIQECDASMANIISATITESHEQCEGFQREGRASEY 408 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 I +++R + P + + + F + Sbjct: 409 IDKLIRNTKFPPKGSFDEYIGRHMFP----------------------DVSGNRSKALFL 446 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--- 482 +++ L+ +G + D+ D N+R+ E+ + + V ++ ++ + + + Sbjct: 447 GYMVRCLLLASSGNRKSDNRDDFRNKRLDLACELLQRELWVHIMHAQKRMVKVMQRHLSG 506 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRR 529 D D + ++A ++ + F + + + NPL ++ R+ Sbjct: 507 DGDLQPLECYVHASIVTNGLNRAFSTGSWCHPFNKRERCSGIVATLRRTNPLQMMSDMRK 566 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 + + R +P+++G++C + TP+G G + +L++ A + Sbjct: 567 ----TRQWVAYAGKAGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAITAIVS--CLARE 620 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG----HFVEDLVTCRSKGESSLF 645 P ++ L E N NL FV L + R + + Sbjct: 621 PSVDALVSCGMKKLDELLLQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRRKQIDAQ 680 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 + D ++ S ++ L + R +M + L + G+E Sbjct: 681 VEIKRD-KQNKEVRIFSDPGRILRPLLIVENLRNIMNRKNGSYSFQELMDQNIIELIGVE 739 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 + + + + + + Sbjct: 740 EE-----------------EDIRCAYGIRHLFAGDEEKN--------------------- 761 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 PS LG + +P+ ++ IL+ + + Sbjct: 762 -----------FSFYTHCELDPSFLLGLSC-------SIIPFANHDTAKRILMQAEKISQ 803 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 I + R + P A L + D G Sbjct: 804 Q---AIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKR------------DYTSG 848 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 + + + +I + + +DS + + + Q F + + Sbjct: 849 SKHDFARPEYFNGQNAIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKE 908 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE 1005 + + L+ +D L D +G + + Sbjct: 909 IT-----------------KRLKHKENINFGKTPSKK----GLVDSLDIDGLPYIGASLQ 947 Query: 1006 EKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDK 1065 + ++++ ++ H + K V L R + GDK Sbjct: 948 SNDIIIGKVSDSGED--HSIKLLHTEKGIVEKVVLSATDDGTNSAFVTLRQTRSPRIGDK 1005 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 A HG KGVI ++ E+ P+ G DIV+NP G P+R GQ+LE LG G Sbjct: 1006 FASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGG 1065 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 A V + E + +A ++ R G A+P Sbjct: 1066 ATRYATPFTSPSVEVITEQLHKAGFSRWGGESVING---------------RTGERAASP 1110 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 VF G + +L+H+ +DK+ Sbjct: 1111 VF---------------------------------------TGPTFYQRLHHMAEDKVKF 1131 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGR 1301 R+TG +T+QP+ + ++GG +FGEME L A+GAA L E L + SD V R Sbjct: 1132 RNTGPVHPLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRR 1191 Query: 1302 TK-----------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 + + + +P +L +E+ S+GI ++ Sbjct: 1192 CQRAAVVVSPAVAADGGGGRKVRGPYCRFCRSAEEVVRVSVPYGAKILYQELFSMGICLK 1251 Query: 1339 LEDE 1342 + E Sbjct: 1252 FDTE 1255 >UniRef50_P11513 DNA-directed RNA polymerase subunit B n=21 Tax=Archaea RepID=RPOB_SULAC Length = 1126 Score = 571 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 202/1276 (15%), Positives = 382/1276 (29%), Gaps = 252/1276 (19%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 R +V Q S F + + + + + ++ Sbjct: 16 KTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTE-VPGLKIKLGKIRYEKPSIRETDKGP 74 Query: 201 RRKL-PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR------------ 247 R++ P LR L Y++ L + + E ++ + +P L+ Sbjct: 75 MREITPMEARLRNLTYSSPIFLSMIPVENNIEGEPIEIYIGDLPIMLKSVADPTSNLPID 134 Query: 248 ----------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV--EYIAGK 295 F + + KV + + T R + K + V AG Sbjct: 135 KLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGY 194 Query: 296 VVAKDYIDESTGELICAANMEL-SLDLLAKLSQSGHKRIETLFT---NDLDHGPYISETL 351 V + + + + G + D + +L Sbjct: 195 RVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSLDPQIQNELLPSL 254 Query: 352 RVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 AL I + G + E+ + D+Y L +G Sbjct: 255 EQASSITSAEEALDFIGNRVAIG-----QKRENRIQKAEQVIDKYFLPHLG--------- 300 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + + K++++ G+ E DD DH N+R+R G++ + FRV Sbjct: 301 --TSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKA 358 Query: 471 VERAVKERLSLGD--LDTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPL 521 + + +L L ++ A I+ ++ + SQ +D+ N L Sbjct: 359 FVKDLVYQLEKSKVRGRRLSLTALVRADIITERIRHALATGNWVGGRTGVSQLLDRTNWL 418 Query: 522 SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 S ++H RR+ + L R + FE RD+H T +GR+CP ETPEGPN GL+ +L++ AQ Sbjct: 419 SMLSHLRRVVS----SLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQV 474 Query: 582 NEYGFLETPYRKVTDGVVTDEIHY----LSAIEEG-----NYVIAQANSNL----DEEGH 628 + G E+ +V + + +S E ++ N L ++ Sbjct: 475 SV-GINESVVERVAYELGVVSVEDVIRRISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKE 533 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 + + R +G+ D+V+ ++T + N + + R Sbjct: 534 LAKKIRESRRQGKL----SDEVNVAYIATDYL----------------NEVHINCDAGRV 573 Query: 689 AVPTLRADK--PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 P + + PLV T + + + G ++++DA Sbjct: 574 RRPLIIVNNGTPLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAY---------- 623 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 L + +T + P LG + + +P Sbjct: 624 ----VALNPQDLTPDHTHLEIWPSAILG-------------------------IIASIIP 654 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 + +N + ++ ++ R +P V L Sbjct: 655 YPEHNQSPRNTYQSAMAKQSLG--LYASNYQI--RTDTRAHLLHYPQMPLVQTRML---- 706 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 G + AI +++DS + + + Sbjct: 707 ---------------------GVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIER 745 Query: 927 TVIDVQVFTRDGVEKDK----RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 + F E+ K + +I + + ++LE + G Sbjct: 746 GMYRSTFFRLYSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGG 805 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 V K+ P E E+ + + ++ E Sbjct: 806 DVLIGKVS--PPRFLQEFKELSPEQAKRDTSIVTRHGENG-----------IVDLVLITE 852 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLG 1102 K+VKV + R +I Sbjct: 853 TLEGNKLVKVRVRDLRI----------------------------------PEI------ 872 Query: 1103 VPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS 1162 A G K + Q + ++ Sbjct: 873 --------------GDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMT 918 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVF-DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 E + G P+ F + K E+++ + +YDGRTG++ Sbjct: 919 IGQIMEAIGGKYAALSGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKL 978 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + + G +Y KL+H+V DKMHAR+ G ++T+QP G+A+ GG RFGEME L + Sbjct: 979 KSRILFGIVYYQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGF 1038 Query: 1282 GAAYTLQEMLTVKSD-------DVNGRTKMYKNIVDGNHQM---------EPGMPESFNV 1325 G A +++ L SD D G Y + + +F + Sbjct: 1039 GTAMLIKDRLLDNSDKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKL 1098 Query: 1326 LLKEIRSLGINIELED 1341 L++E+ S+ I+ L Sbjct: 1099 LIQELMSMVISPRLIL 1114 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 76/237 (32%), Gaps = 50/237 (21%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + L+ LDSF F+ L+ I + +++ R Sbjct: 8 WAIAESFFKTRGLVRQHLDSFNDFLRN------KLQQVIYEQGEIVTEVPGLKIKLGKIR 61 Query: 75 LGEPV-----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +P E ++R +TYS+P+ + + V E + E+Y Sbjct: 62 YEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENNIEG--------EPIEIY 113 Query: 124 MGEIPLM------------------------TDNGTFVINGTERVIVSQLHRSPGVFFDS 159 +G++P+M G F++NG+E+VI++Q + Sbjct: 114 IGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQEDLATNRVLVD 173 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRI-DRRRKLPATIILRALNY 215 + V + E + + ++P II+RAL + Sbjct: 174 YGKSGSNITHVAKVTSSAAGYRVQVMIERLKDSTIQISFATVPGRIPFAIIMRALGF 230 >UniRef50_Q9C8S4 DNA-directed RNA polymerase n=7 Tax=Embryophyta RepID=Q9C8S4_ARATH Length = 1114 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 183/1254 (14%), Positives = 343/1254 (27%), Gaps = 257/1254 (20%) Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR--RKLPATIILRALNYTTEQILD 222 + + I Y G+++ ++ V D+ + P ++ + + Sbjct: 33 MTLKGLDCRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADCRK 92 Query: 223 LFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDV 282 L K F + +V+ + Sbjct: 93 LLKCKESTSEMGG----------------YFILNGIERVFRCVIAPKRNHPTSMIRNSFR 136 Query: 283 KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD 342 E +D T +L N + + L Sbjct: 137 DRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNS 196 Query: 343 HGPYISETLRV------------DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFF 390 I E+L T I +R TRE F Sbjct: 197 CDEEIYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQ 256 Query: 391 SEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN 450 L V L + +I +++KL + + D+ D L N Sbjct: 257 P----VLDGVAEAVLRDYLFVHLDNDH--DKFNLLIFIIQKLYSLVDQTSLPDNPDSLQN 310 Query: 451 RRIRSVGEMAENQFRVGLVRVERA----VKERLSLGDLD-----TLMPQDMINAKP---I 498 + I G + + L R +K+ L + + +IN P I Sbjct: 311 QEILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSI 370 Query: 499 SAAVKEFFGSS--------------QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 +++ + + ++ N L ++ R A+ G Sbjct: 371 GTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFR---AVHRGASFAGLRT 427 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 VR + P +G +CP+ TP+G GL+N ++ ++ + R + Sbjct: 428 TTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKS---- 483 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 L G R+ +V ++ + Q V ++ Sbjct: 484 --------------VVDVLTGAGMVPSLPKLVRAG-------PPKVIHVLLDGQVVGTLS 522 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 ++L+ + R L + P++ + VG + G+ Sbjct: 523 SNLV--TKVVSYIRRL------KVEAPSVIPEDLEVG---------YVPTSMGGSYPGLY 565 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 +R + V + + P + P+ ++ Sbjct: 566 LASCPARFIRPVKNISIPSDNIELIG------------------PFEQVANPINII-FIS 606 Query: 785 DGPSTDLGELALGQNMRVA-FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 P+T G VA PW+ +N + ++ ++ + + + Sbjct: 607 TFPATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIY 666 Query: 844 KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 L T P V + + Sbjct: 667 HLQ----TPQSPVVRTKTYTTYSIDENP-------------------------TGTNAIV 697 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 A+ D++D+ + + V + Q++ + ++ + Sbjct: 698 AVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSRF--------------- 742 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 + + ++ D +G + E ++ +H Sbjct: 743 ----------DSGSKSFRRSTNKAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRH 792 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 K + D + + + R GDK + RHG KGV S++ P Sbjct: 793 MKRKGTDPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDI 852 Query: 1084 DMPYD-ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 DMP++ G D+++NP PSRM I +LE+ Sbjct: 853 DMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSL------------------- 893 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 + VD + F D E K ++ +LK Sbjct: 894 ------------HGKFVDATPFRDAVKKTNGEEESK---------SSLLVDDLGSMLKEK 932 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 G LY G G + + + +G +Y +L H+V DK RSTG +T QP+ G+ Sbjct: 933 GFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGR 992 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK------------------- 1303 + GG RFGEME +L A+GA+Y L + L SD Sbjct: 993 KRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVVNVQQKKL 1052 Query: 1304 ----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + MP F L E+ S+ I + L+ Sbjct: 1053 IQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQL 1106 Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 35/419 (8%), Positives = 98/419 (23%), Gaps = 103/419 (24%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP 78 ++ L++ ++SF GL Sbjct: 14 EDFKELHNLVTHHIESFDYM------TLKGL----------------------------- 38 Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN----- 133 +C+ ++Y+ + + + + G+ P+M + Sbjct: 39 -----DCRQAKISYTGTFMADVCFKYND--------GVVVRDKFDFGQFPIMLMSKLCSL 85 Query: 134 -------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 G F++NG ERV + S + K Y++ Sbjct: 86 KGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNH-PTSMIRNSFRDRKEGYSS 144 Query: 175 RIIPYRGSW-------LDFEFDPKDNLFV---RIDRRRKLPATIILRALNYTTEQIL--- 221 + + R + + + V + R LP ++L+AL + ++ + Sbjct: 145 KAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYES 204 Query: 222 ---DLFFEKVIFEIRDNKLQMELVPERLRGE---TASFDIEANGKVYVEKGRRITARHIR 275 + + + + E F E K + + + Sbjct: 205 LNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQP----VLD 260 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET 335 + + ++ + + + Sbjct: 261 GVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVI 320 Query: 336 LFTNDLDHGPYISET-------LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFEN 387 ++ + L + +L ++ +++ P + + Sbjct: 321 TIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSIETLLK 379 >UniRef50_Q54BM1 DNA-directed RNA polymerase I subunit rpa2 n=2 Tax=Eukaryota RepID=RPA2_DICDI Length = 1130 Score = 570 bits (1469), Expect = e-160, Method: Composition-based stats. Identities = 200/1391 (14%), Positives = 389/1391 (27%), Gaps = 337/1391 (24%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN--SELQYVSYRLGEPVF 80 ++ L+ +DSF F + G++ + P+ + ++++ Sbjct: 4 ELKSLIQPHIDSFDFFTDH------GIDLVLKDSEPLYFEHNSTQYKIRFTDL------- 50 Query: 81 DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVING 140 ++I E+E+ + Sbjct: 51 ----------------------------KLSRPTRNIVEKEIKL---------------- 66 Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 R G +++ LY + + +++ ++ Sbjct: 67 -----YPNESRETGTTYNAPFKGAIG----LYEVNEMDEMDDGTEVDYNKQEPTHTFEVD 117 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE---RLRGETASFDIEA 257 +LP + R + L + + + + L A+ + Sbjct: 118 LGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVAL 177 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 + K + +G T K+ + + V + + D T E Sbjct: 178 HRKAWTNRGPGYT--------KNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEF 229 Query: 318 SLDLLAKLSQSGHKRIETLFTND----------LDHGPYISETLRVDPTNDRLSALVEIY 367 L L + ++ N D +++ N + L I Sbjct: 230 FLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNINTQEEVLDYIG 289 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 R A + F F + +GR N+ + + + +I Sbjct: 290 SRFR---------ARTQFPPSFSNIK------IGRWFINQFVFVHLP--NYNDKYNLLIL 332 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK---------ER 478 +++KL + GK D+ID + + G + + L + K ++ Sbjct: 333 MIQKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKK 392 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEI 524 S L + + + I+ F + L D+ N L I Sbjct: 393 KSGDKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFI 452 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 +H R ++ G +R + P +G CP+ TP+G GL+N LS Sbjct: 453 SHFR---SIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVD 509 Query: 585 G-------FLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCR 637 +T I +S + I R Sbjct: 510 AAQDPTVQKAQTLLPSFLAAHGMLPIDMVSVYQHQYLTITLDG----------------R 553 Query: 638 SKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADK 697 G+ + +++ M R ++ Sbjct: 554 VLGKIEPKAGEEM--------------------------------VKMLRYLRS--MGNE 579 Query: 698 PLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYT 757 P + ME + A + V + G+ + +R + V E L Sbjct: 580 PSIPKTMEISYAPPTNV-ENGQYSGISLFTTGARFMRPVVNLTSGQNELIGPQEQL---- 634 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 ++ V + P+ LA P++ YN + Sbjct: 635 -------YMEIAVVPHEVIKGVTTHIETSPTAMFSLLAN-------LTPFSDYNQSPRNM 680 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 ++ ++ T +H ++ K+ P V K Sbjct: 681 YQCQMAKQTMGTPLHSYPFRTDNKLYKVQNV----QKPIVHTKNQFK------------- 723 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 + A+ D++D+ + + V+ + Sbjct: 724 ------------FRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGSVYKNE 771 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 ++ D+ E+ + V E + D Sbjct: 772 YIDLDQGLSRFEQ-----------------------KKTFFGRPNTVVDELDKFIDTDGL 808 Query: 998 LELGLTDEEKQNQLEQLAEQYD----ELKHEFEKKLEAKRRKI--TQGDDLAPGVLKIVK 1051 +G + + + + E+ R I G P + + Sbjct: 809 PFVGRLIKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNIC 868 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 V L R GDK + RHG KGV+S++ P +MP+ E+G D+++NP P Sbjct: 869 VKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFP------- 921 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 + IG + + A GA + D + F +E Sbjct: 922 --------SRMTIGMLVEIL----------------AGKAGAIHGKFQDATAFQFDE--- 954 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 + E L G ++Y G TG++FE + G Y Sbjct: 955 ----------------NNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCY 998 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 +L H+V DK R+ G + +T+QP+ G+ GG RFGEME +L A+GA++ L + L Sbjct: 999 YQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRL 1058 Query: 1292 TVKSD----DVNGRTKM-----------------YKNIVDGNHQMEPGMPESFNVLLKEI 1330 SD V K+ + +P F L+ E+ Sbjct: 1059 MKSSDFAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAEL 1118 Query: 1331 RSLGINIELED 1341 ++ I ++L+ Sbjct: 1119 AAVNITMKLQV 1129 >UniRef50_B9VQ44 DNA-directed RNA polymerase (Fragment) n=1 Tax=Acholeplasma sp. DM-2009 RepID=B9VQ44_9MOLU Length = 1223 Score = 564 bits (1453), Expect = e-159, Method: Composition-based stats. Identities = 322/836 (38%), Positives = 453/836 (54%), Gaps = 53/836 (6%) Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 LR + A+ V +G +T Q+ ++ L + A +D Sbjct: 332 RYLRTFIDHDILLADDSVLFYEGTEVTDEVYFQIYENKQNLKSLEDLKYATVYAKQDIDI 391 Query: 304 ESTGELICAANMELS-LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSA 362 + + ++ + + + L N + + V Sbjct: 392 LEDYRRHESVESQRDHKPIMYCGYEITDENLLELQINRNKLDENVIKYFLVAG------- 444 Query: 363 LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 + GE +E+ + + + + E ++ Sbjct: 445 --------KKGEFYRKESQRRATFVEVIQIKAAKDAKDDKDVI-ELIGHDSRETRLHITV 495 Query: 423 DDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 DII + +++ +G G++DDIDHL NRR+R +GE+ +NQFR+GL ++E+ +K+++S Sbjct: 496 SDIIASISYYLNLYDGVGKIDDIDHLSNRRLRLIGELLKNQFRIGLAKLEKNIKDKMSTA 555 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 D Q +IN KP++A++KEFFGSSQLSQFMDQ NPL+E+T KRR+SALG GGL R+R Sbjct: 556 DAKEASLQSLINIKPLTASLKEFFGSSQLSQFMDQINPLAELTQKRRVSALGTGGLARDR 615 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG----- 597 AG EVRDVH +HYGR+CPIETPEGP+IGLI+SL+ YA+ ++YGF++TPY KV Sbjct: 616 AGVEVRDVHESHYGRICPIETPEGPSIGLISSLASYAKVDQYGFIQTPYLKVDKSDPEHP 675 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 VT E Y +A EE +++IA A+S DE GHF + V R G++ + +VDYMDVS Sbjct: 676 FVTSEYVYFTAGEEEHHIIASADSQTDENGHFKTETVIGRFMGDTRSYPSKKVDYMDVSP 735 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 +Q+VSV S IPFLEHDDA+RALMGANMQRQAVP L D P+VGTG+E A DSG V Sbjct: 736 KQIVSVATSSIPFLEHDDASRALMGANMQRQAVPLLVPDSPIVGTGIEYRSAKDSGSAIV 795 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAG----------------------------ID 749 A GVV Y D +IVI V + G + Sbjct: 796 AHVDGVVTYADGRKIVIAVKPEASIKTTRGKLVYDKDTEFNWEAYDQIRQAKMTDLLRFE 855 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y LT++ RSNQ+T I Q P V +GE +++GDV+ADGPS + GELALG+N+ VAFM W G Sbjct: 856 TYPLTQFLRSNQDTSILQKPIVQIGEKIDKGDVIADGPSINKGELALGRNVVVAFMTWEG 915 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 YN+ED++++SE +V+ D +T+IHI E SRDTKLG EEIT +IPNV AL LD+ G Sbjct: 916 YNYEDAVIMSEDLVKNDVYTSIHIDEHQVESRDTKLGKEEITREIPNVSPDALKFLDDRG 975 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 +V G EV GDILVGK+TPKG+T+ TPEEKLL+AIF EKA +V+D+SL+VP+G G V Sbjct: 976 VVIPGTEVKEGDILVGKITPKGQTEPTPEEKLLQAIFNEKAREVRDTSLKVPHGGGGIVH 1035 Query: 930 DVQVFTR-DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 +Q F++ +G E E+ + + + +K + G I +L + Sbjct: 1036 SIQYFSKSNGDELGPGVNEVIRVYIVKKRKISEGDKMAGRHGNKGVISKILPREDMPY-M 1094 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 D P D L L + N + L + K+ DL Sbjct: 1095 ADGTPVDIMLN-PLGVPSRMNIGQVLEIHLGMAAKKLGIKVATPVFDGLTQLDLEQ 1149 Score = 65.3 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD- 354 +Y + + + L A L G IE + + + ET + D Sbjct: 1 GAWLEYEMGAKNIFYGKLDRSKKVSLTALLQAFGFDGIEEIKKLFPTYKKMLDETFKKDE 60 Query: 355 --PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 +A+ ++Y +R GE AA+ F RYDL VGR KF + L Sbjct: 61 KEGILSSDTAIEDLYSKLRQGEKIPVSAAKEFVRTRLFDSRRYDLEEVGRYKFKQKLDI 119 >UniRef50_Q6E6F3 DNA-directed RNA polymerase n=1 Tax=Antonospora locustae RepID=Q6E6F3_ANTLO Length = 1014 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 172/1212 (14%), Positives = 339/1212 (27%), Gaps = 244/1212 (20%) Query: 169 KVLYNARIIPYRGS-WLDFEFDPKDNLFVRID-RRRKLPATIILRALNYTTEQILDLFFE 226 R + Y G+ ++D E+ + ++ + K+P + + E+ D Sbjct: 8 PEECRLRDLTYCGNIYVDIEYTKHRKVIIKKNVFIGKVPIMLRSMLCHL-EEKRDDCETV 66 Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 + + E F ++ +V + + + R I ++ K Sbjct: 67 RETY----------GHRECPLDMGGYFIVKGVERVILIQEQLSKNRIIADIDNKGCKFTS 116 Query: 287 VPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY 346 V K I + + S+ + L G + G Sbjct: 117 VTSSTHD-KKSKTSIILKKRLLYLKNNVFTDSVPAVIVLKALGMVSDCEIAEFVGQEGAL 175 Query: 347 I------SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV 400 + E + +L AL I ++ RP E R L V Sbjct: 176 LEMLEPSLEHALQTGVHTQLQALDFISKLTRP-----------RQNVSRIDEARTILYEV 224 Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 + +++ L+ +DDID LGN+R G + Sbjct: 225 ------VLPNIPNDGIDMRRKAITVAIMIRVLLQAELNMISMDDIDFLGNKRFELAGNLL 278 Query: 461 ENQFRVGLVRVERAVKERLSLGDLDTLMPQDM-------INAKPISAAVKEFFGSSQLSQ 513 F +R +K+ + + QD+ + IS + + + Sbjct: 279 SILFEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLNLQVNLISNSFVRAISTGNWTV 338 Query: 514 F---MDQNNPLSEITHKRRISALG-----PGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 M++ ++ I+ +G + R R +H + +G +CP +TPE Sbjct: 339 RRFRMERAGVTQVLSRLSYIAMIGSMAKIQSQFEKTRKISGPRSLHTSSWGMLCPADTPE 398 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNL 623 G + GL+ +L++ A+ ++ ++ + + S I+ + + N + Sbjct: 399 GESCGLVKNLAILAEITTD-VPQSDVEQLLFQLGVRDFRTCSGIDFYSKHSYLIFLNGTI 457 Query: 624 DEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA 679 + V V R +G S F + + + + G + L + R Sbjct: 458 VGICYNNNTLVRKFVEMRRRGVVSQFVSVYKNDEKRT-ISIATDGGRICRPLIIVENGRQ 516 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 ++ + L G + V+ + S I Sbjct: 517 MLEHEDLELLRRRYKNPDDLFKEGKVEFLDVNEENNTKIA-------LRESNICRSTTHL 569 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 E+ Sbjct: 570 EICEYSILG--------------------------------------------------- 578 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 +P+ +N + ++ + + + R L + P V Sbjct: 579 CVAGLIPYPHHNQSPRNTYQCAMGKQAMG-FVALNQYR---RFDTLLNLLVYPQKPLVST 634 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 ++ + + + A+ D++D+ + Sbjct: 635 KITDIVNFEKLPA-------------------------GQNGMVAVMAYAGYDIEDALII 669 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 + +V+ + + G+ RI Sbjct: 670 NKGALDRGFGRCEVYRSYKHSLKRYSN-----------------------GMCDRISGSK 706 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + GV D ++ E+ + EL + K G Sbjct: 707 HSDGVRGPGERVFDGDFFVYKESPTEDADFKFS------GELYKNLSPSVVDKVIVARSG 760 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 +D +VK L R+ + GD Sbjct: 761 ED-----QFMVKTCLRQVRQPEVGD----------------------------------- 780 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 SR G K L + E Q + Sbjct: 781 --KFSSR-----------------HGQKGVIGLVVPETDLPFSEDGQVPDIIMNPHGFPS 821 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 ++ E++ + G VF ++ +L G+ +G TG+ Sbjct: 822 RMTVGKIIELISGKAAVFTGRQSDATVFREDITEDLSHILIKHGYSYCGKDTFTNGITGD 881 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 +E V G +Y +L H+V DKMHARS G +++T+QP GK++ GG R GEME L Sbjct: 882 VYEGYVFFGPVYYQRLKHMVADKMHARSRGPRAMLTRQPTEGKSREGGLRLGEMERDCLI 941 Query: 1280 AYGAAYTLQEMLTVKSD----DVNGRTKM-----YKNIVDGNHQMEPGMPESFNVLLKEI 1330 YGA+ L E L + SD + R + + + MP + +L +E+ Sbjct: 942 GYGASAILCERLMISSDVFRAYICHRCGIIVYKNMCTLCKRGDPVPVDMPYACKLLFQEL 1001 Query: 1331 RSLGINIELEDE 1342 S+ I ++ + Sbjct: 1002 MSMNILPRIKLQ 1013 Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN------ 133 +EC++R +TY + V + K I ++ V++G++P+M + Sbjct: 6 VLPEECRLRDLTYCGNIYVDIEYT--------KHRKVIIKKNVFIGKVPIMLRSMLCHLE 57 Query: 134 -----------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 G F++ G ERVI+ Q S K V Sbjct: 58 EKRDDCETVRETYGHRECPLDMGGYFIVKGVERVILIQEQLSKNRIIADIDNKGCKFTSV 117 Query: 171 LYNARIIPYRGSWLDFEFDPKDNLFVRID-RRRKLPATIILRALNYTTEQILDLFFEKVI 229 + + S K L+++ + +PA I+L+AL ++ + F + Sbjct: 118 TSSTHDKKSKTS----IILKKRLLYLKNNVFTDSVPAVIVLKALGMVSDCEIAEFVGQEG 173 >UniRef50_B7FQD9 DNA-directed RNA polymerase (Fragment) n=2 Tax=Bacillariophyta RepID=B7FQD9_PHATR Length = 1147 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 202/1396 (14%), Positives = 375/1396 (26%), Gaps = 328/1396 (23%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQ 83 + L + +DSF F EQ G++ + F I + + +P Sbjct: 3 LRTLTAPHVDSFDYFWEQGLAR--GVQDIEPAEFNIVDPQ-----KLRDNPIAKPAKAPG 55 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE-VYMGEIPLMTDNGTFVINGTE 142 E + + ++ +E++ VY GEI + TF Sbjct: 56 E-----------------------RSQKLLPRECRERKLVYAGEI-----SATF------ 81 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 + R GV F P R L+ F Sbjct: 82 --CYRMIQRRNGVDF--------------------PSRPVRLNKTF-------------G 106 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDIEANG 259 +P ++ + + L K + + +R + Sbjct: 107 DMPIMVMSKGCHLEGTTPKQLVKLKEEDNEFGGYFIVGGIERCVRLLQVPRRNHATAIQR 166 Query: 260 KVYVEKGRRIT--ARHIRQLEKDD-VKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 Y +G T +R + + I V Y+ + A E Sbjct: 167 SSYKNRGNTYTDLGVAMRCARHNGDMSAITNTVHYLTTGGANLKF---------VAKKQE 217 Query: 317 LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPP 376 + + L +T + G + L A + P E Sbjct: 218 FLIPAILILRALSGSESQTELYERIVQGDQSNTFLVARAGLLLQDARARFGSLNTPDECL 277 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 F L + +G R +L + ++ +++KL Sbjct: 278 AFIGTR--FRRLSQKAETTSDVEIGHHIIRRFVLIHLPT--YRDKLECLLLMLRKLYAFA 333 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI--- 493 G VD+ D L N+ I G + + +++ L Sbjct: 334 AGDCGVDNADSLQNQEILLPGHLMCTFIKEKFEEFLSSLRLALLSDLRKDFARTSAKLTD 393 Query: 494 --------------NAKPISAAVKEFFGSSQ--------------LSQFMDQNNPLSEIT 525 + I V+ F + + ++ N L Sbjct: 394 AKYWGKMVDRHAGKASGGIGKKVQHFLSTGNIVSTSGLDLMQVSGYTIVAERLNFLRYCA 453 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 H R ++ G E VR + P +G +CP+ TP+G GL++ L++ ++ Y Sbjct: 454 HFR---SVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHLALKSKVMAYP 510 Query: 586 FL-----ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 + + S +G + + +G V Sbjct: 511 SRLDAKGMIDLDDLLLSLGVTPCGAGSRNGDGRIGSTHLHLPVSIDGRIVGGASP---SV 567 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD-DANRALMGANMQRQAVPTLRADKPL 699 + + + +D ++ L+P + R P Sbjct: 568 LKIIAAHLRKLKVDNPPVVPPTLEVGLVPPGNPGAPYPGLYLFTCAARLVRP-------- 619 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + + G +++ + +DI L + R Sbjct: 620 ----------------VLNRASGHTEFIGPLE-------------QGYMDIACLDEDIRE 650 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 T P L + P++ N + Sbjct: 651 GITTHQELDPTNMLS-------------------------LIANLTPFSDQNQSPRNMYQ 685 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 ++ ++ T H ++ +L T P V + + Sbjct: 686 CQMGKQTMGTPAHSLPYRPDNKLYRLQ----TPQAPVVQTSIHGEYKMD----------- 730 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 + + A+ D++DS + + V V+ V Sbjct: 731 --------------EYPNGTNAVVAVLSYTGFDMEDSVILNKSSVERGFAHASVYKTIDV 776 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + A + + + V L D + Sbjct: 777 SLQEEAKMTGASS--------------SGEDVRMKFSNKVKFDKVMYPSLQ---DDGLPQ 819 Query: 1000 LGLTDEEKQNQLEQLAEQYDE--LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 +G E + E+++ + G+D G V + L Sbjct: 820 VGDCMTEGDPLYCVVDSISGMDRAAKHKEREIAYVQSVRALGNDSGKGADNKVSITLRFP 879 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R GDK + RHG KGV+S + P EDMP+ E+G D+++NP H Sbjct: 880 RNPVLGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVIINP---------------HA 924 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 + IG + +M A GA + + FS E Sbjct: 925 FPSRMTIGMMVESM----------------AGKSGALHGNFQNATPFSFHES-------- 960 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 D E L+ G LY G +G + + +G +Y +L H Sbjct: 961 ---------GDKVSVDYFGEQLQAAGYNYYGSEPLYSGVSGCVMQADLYIGVVYYQRLRH 1011 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 +V DK R+TG + +T+QP+ G+ + GG R GEME +L ++G A+ LQ+ L SD Sbjct: 1012 MVLDKYQVRATGPTNELTRQPIKGRKKGGGIRLGEMERDSLLSHGTAFLLQDRLLNCSDK 1071 Query: 1298 VNGR-TKMYK------------------------------NIVDGNHQMEPGMPESFNVL 1326 +P + L Sbjct: 1072 HVAYACCRCGDLLMSATERSTVQTTGQSANEAINKPKIRLYCRSAGSVEPIVLPYVYRYL 1131 Query: 1327 LKEIRSLGINIELEDE 1342 + E+ ++ + + L + Sbjct: 1132 VNELAAMNVKMRLAIK 1147 >UniRef50_C1FDM4 DNA-directed RNA polymerase n=2 Tax=Micromonas RepID=C1FDM4_9CHLO Length = 1192 Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats. Identities = 191/1280 (14%), Positives = 351/1280 (27%), Gaps = 288/1280 (22%) Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 + Y A ++ + + F +F R R P + + N Sbjct: 96 PRECRESSNTYKAPMLAT----VAWTFGDVGAIFRREFRICMFPVMVASKVCNLFGFSQD 151 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDIEANGKVYVEKGRRITARHIRQLE 278 +L + +R + + + K Y +G T Sbjct: 152 ELICRGEEGHEMGGYFILNGNERIIRLLVQQRRHYIMGMKRKAYSSRGPIYTHYATAIRC 211 Query: 279 KDDVKLIEVPVEYIAGKVVAKDYIDESTGE------LICAANMELSLDLLAKLSQSGHKR 332 + + + A+ E +I A E S ++ + G Sbjct: 212 SANDEHTSTVRIHYTSDGSARLVFVHRRKEYFVPAGIILRALAEFSDSVVQAIVARGLTG 271 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE 392 + ++ I ++++ AL + R Sbjct: 272 LGA-QVFAIERIRIILGEAATFGIHNKVQALAYLGEHFRAQLDANP-------------- 316 Query: 393 DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRR 452 VG+ + + ++ +M+KL + G+ D+ D L + Sbjct: 317 -WETNFDVGKRLICEHIFIHLQSD--EDKFNLVLLMMQKLYALVAGQCSADNPDSLMHHE 373 Query: 453 IRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM-------------INAKPIS 499 I G + + R L K L+ + I I Sbjct: 374 ILLPGILMQIFVREKLQDALHKAKIALNREFEENPNHASADDGEWLSQVAIEAITKTNIG 433 Query: 500 AAVKEFFGSSQLS--------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 + F + LS D+ N + I+H R ++ G E Sbjct: 434 RLAEYFLATGNLSSRTGLGLTQTSGFTIVADKLNYMRYISHFR---SVHRGAYFAELRTT 490 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 VR + P +G +CP+ TP+G GL+N L+ + R V + Sbjct: 491 TVRKLLPESWGFLCPVHTPDGSPCGLLNHLAASCYIHVACESTGEARDRARSQVLKVLSS 550 Query: 606 LSAIEEGN----------YVIAQANSNL------DEEGHFVEDLVTCRSKGESSLFSRDQ 649 A+ ++ + + + V L + G + + S + Sbjct: 551 AGALILHGSTSLGSAPPAHLTVMLDGLILGFVADSDAKVVVSALRAAKVSGSNGVSSHLE 610 Query: 650 VDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA 709 + ++ +S+ L F + R P ++ + A Sbjct: 611 IAHIPLSSCGYGGAFPGLYLF------------STSSRMMRPVIQQQNRITENIGSLEQA 658 Query: 710 VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 S + Q P Sbjct: 659 FMSIRCPDGR-----------------------------------------------QKP 671 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 + +GP T L + + PW+ +N + ++ ++ Sbjct: 672 -----TCIAEHAHEENGPGTILS-------VVASLTPWSDFNQSPRNMYQCQMAKQTMGM 719 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 +H R T P K Sbjct: 720 PLHSFCY----RPDTKIYRLHTPQRPVAMTGQYDKYQMD--------------------- 754 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE 949 + A+ D++D+ + + + ++ + E Sbjct: 755 ----NYPLGTNAVVAVIAHTGYDMEDAMIVNKGAMERGLGHATLY------------KTE 798 Query: 950 EMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN 1009 + L + + +++ L S + + + D G + Sbjct: 799 TVTLVAGSDENFGQCNVIQQKLGSP---IAFTEKHPFDP--DIDTDGAPRPGSIKQAGST 853 Query: 1010 QLEQLAEQYDELKHEFEK---KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 + ++ K + R I+ G + V + R GDK Sbjct: 854 LCSVVDRSTGRVRLHKIKGSDHVIIDRVSISSGKASKGQTETKMSVTVRCDRNPIIGDKF 913 Query: 1067 AGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 + RHG KGV+S + P ED+PY E +G+ DI++NP PS IG Sbjct: 914 SSRHGQKGVLSFLCPEEDLPYIEKSGSRPDILINPHAFPS---------------RMTIG 958 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 + +M A GA + +D S F + + Sbjct: 959 MLLESM----------------ASKAGALDGRFIDASPFQAANDETHIISPTR------- 995 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 E E+L+ SG + +G TGE+F+ + VG +Y +L H+V DK Sbjct: 996 --------EYGEMLRKHGYNYSGSETMVNGLTGERFDVDIFVGLVYYQRLRHMVSDKFQV 1047 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV----NGR 1301 RS G + +TQQP+ G+ GG RFGEME AL A+G++Y + + L SD Sbjct: 1048 RSLGPNNPLTQQPIKGRKAGGGIRFGEMERDALIAHGSSYLIHDRLHACSDRHVTSLCTY 1107 Query: 1302 TK----------------------------------------MYKNIVDGNHQMEPGMPE 1321 + G +P Sbjct: 1108 CGSLLAPGANIQMAATHQVHASGAGNGQGRLHSFDDIFPRKVSCRVCNTGTGVHNVALPF 1167 Query: 1322 SFNVLLKEIRSLGINIELED 1341 F L E+ ++ I I LE Sbjct: 1168 VFKYLAAELAAMNIRIGLEV 1187 Score = 96.9 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 95/288 (32%), Gaps = 71/288 (24%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI---------QSYSGNSELQYVSYR 74 + + L SF F++ GL R + I S S ++ + + Sbjct: 22 LRGVARNHLASFDYFLDH------GLSDVVRCLDNISIQPSGAQNTSSSPRFKMWFENIS 75 Query: 75 LGEP-------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 +G P +EC+ TY AP+ + + V I +E Sbjct: 76 IGRPIREDTTAVRARDPRVFPRECRESSNTYKAPMLATVAWTFGD-------VGAIFRRE 128 Query: 122 VYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFF 157 + P+M G F++NG ER+I + + + Sbjct: 129 FRICMFPVMVASKVCNLFGFSQDELICRGEEGHEMGGYFILNGNERIIRLLVQQRR-HYI 187 Query: 158 DSDKGKTHSSGKVLYNARIIPYRG-------SWLDFEFDPKD---NLFVRIDRRRKLPAT 207 K K +SS +Y R S + + +FV + +PA Sbjct: 188 MGMKRKAYSSRGPIYTHYATAIRCSANDEHTSTVRIHYTSDGSARLVFVHRRKEYFVPAG 247 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 IILRAL ++ ++ + + + +E + + GE A+F I Sbjct: 248 IILRALAEFSDSVVQAIVARGLTGLGAQVFAIERI-RIILGEAATFGI 294 >UniRef50_Q27493 DNA-directed RNA polymerase n=5 Tax=root RepID=Q27493_CAEEL Length = 1127 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 182/1234 (14%), Positives = 342/1234 (27%), Gaps = 277/1234 (22%) Query: 184 LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 +D + + I K+P + + +L + + Sbjct: 88 IDVHVNGSRLDIIEII-LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSE 146 Query: 244 ERLRG---ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + +R +F I K + EKG+ + V + V + A + Sbjct: 147 KVIRLLIANRRNFPIAIIRKTFKEKGKL--------FSEFGVMMRSVKENHTAVMMTLHY 198 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETL---FTNDLDHGPY-------ISET 350 + + + L+ + K + F + + + Sbjct: 199 LDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQ 258 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + + ++ +A+ I R D GR +L Sbjct: 259 CQEEEILNQEAAIRAIGSRFR-------------VAVSDRVAPWEDDLEAGRFIIRECVL 305 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 S + + +KLI + G+ + D+ + G + R + Sbjct: 306 IH--LDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMEN 363 Query: 471 VERAVKERLSL-GDLDTLMPQDMI--------NAKPISAAVKEFFGSSQL---------- 511 + V+ +L + I+ + F + L Sbjct: 364 IIGMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTRVGLALQQ 423 Query: 512 ----SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 567 S ++ N L ++H R A+ G E +VR + P +G +CP+ TP+G Sbjct: 424 ESGFSVIAERINQLRFVSHFR---AIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGA 480 Query: 568 NIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT--DEIHYLSAIEEGNYVIAQANSNLDE 625 GL+N ++ + + + + + L+ E Y + Sbjct: 481 PCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELY-------PVLM 533 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 G F+ +P + R L A + Sbjct: 534 NGRFL-----------------------------------GYVPITKAASIERYLRCAKV 558 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM-YPG 744 + A ++ LV + + G+ DA R++ V M Sbjct: 559 AKDARIPYTSEIALVRRSTDIK-------NIQTQYPGIYILSDAGRLIRPVRNLAMDAVE 611 Query: 745 EAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804 G + P V++ + + + + N+ Sbjct: 612 HIGTFEQVYLSVVLDPE----EAEPGVTMHQELHPSCL-----------FSFAGNL---- 652 Query: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSK 864 +P+ +N + ++ ++ T +H ++ +L P + A K Sbjct: 653 IPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQ----FPQQPMLKLEAYEK 708 Query: 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV 924 + + A+ D++D+ Sbjct: 709 YEMD-------------------------EYPLGTNACVAVISYTGYDMEDAMTINKASY 743 Query: 925 SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGV 984 V + ++ L E + ++ EE++ + Sbjct: 744 QRGFAHGTVI-----KVERINLVTERERKTIFYRNPREEIKTVGPDGLPIPGRRYF---- 794 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAP 1044 D + E + H E R + QG+ Sbjct: 795 ---------LDEVYYVTFNMETGDFR--------THKFHYAEPAYCGLVRIVEQGE--GD 835 Query: 1045 GVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 K + ++R GDK A RHG KG+ S + P+E +P+ E G DI+ NP G P Sbjct: 836 SGAKHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFP 895 Query: 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTF 1164 + IG I +M + A + D S F Sbjct: 896 ---------------SRMTIGMMIESMAGKAA----------------ATHGENYDASPF 924 Query: 1165 SDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERP 1224 E D ELL G Y G G Q E Sbjct: 925 VFNE-------------------DNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQ 965 Query: 1225 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1284 + G +Y +L H++ DK R+TG +T QP+ G+ + GG RFGEME A+ A+G + Sbjct: 966 IFFGIVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTS 1025 Query: 1285 YTLQEMLTVKSD----DVNGRTKM--------------------------------YKNI 1308 + LQ+ L SD R + Sbjct: 1026 FVLQDRLLNCSDRDVAYACRRCGSLLSVLMSSRAGSHLLKKKRKDDEPLDYTETQRCRTC 1085 Query: 1309 VDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +P F L E+ ++ + I+L E Sbjct: 1086 DKDDQVFLLQVPRVFRYLTAELAAMNVKIKLGIE 1119 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 90/243 (37%), Gaps = 45/243 (18%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD---- 81 + S +DSF + + + +A F +++ +++ S +L +P D Sbjct: 4 DIASYHVDSFDFLVSKGCQFAA--QAVPAEKFRLKNGD-AVTMKFTSAQLHKPTLDTGAK 60 Query: 82 ---------VQECQIRGVTYSAPLRVKL-----------------RLVIYEREAPEGTVK 115 EC+ RG+TY+ L+V + ++ I R Sbjct: 61 LTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRG 120 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 +++ V GE P+ G F++NG+E+VI + F + KT L++ Sbjct: 121 MSRKELVVAGEEPI-EKGGYFIVNGSEKVIRLLIANRRN-FPIAIIRKTFKEKGKLFSEF 178 Query: 176 IIPYRGSW-------LDFEFDPKDNLFVRIDRRR---KLPATIILRALNYTTEQILDLFF 225 + R + + + + + RR +P I++AL + ++ F Sbjct: 179 GVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGF 238 Query: 226 EKV 228 ++ Sbjct: 239 KRG 241 >UniRef50_C5YHJ3 DNA-directed RNA polymerase n=10 Tax=Magnoliophyta RepID=C5YHJ3_SORBI Length = 1251 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 194/1389 (13%), Positives = 388/1389 (27%), Gaps = 322/1389 (23%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGN--------SEL 68 L+S Q++S+ +F+ GL+ F S+ I Y + + + Sbjct: 117 SFFSATGLVSHQINSYNQFVSH------GLQDLFDSLGEITVEPDYDPSNKSGAWKHATI 170 Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 ++ L EPVF V L L + + + Sbjct: 171 KFGRVELSEPVFMVD---------------NLDLEQQDLKFKPRH-----------ARLQ 204 Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 MT + T +V + DK +GK + + Sbjct: 205 RMTYASRMNVEMTAQV------------YILDKSDKAKTGKDTHVH--------RREIMT 244 Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 + K LP + Q D F+ Sbjct: 245 ETKQVSM------GLLPVMVKSNLCWLHKLQESDCQFDFG-------------------- 278 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGE 308 F I+ KV++ + +R +R ++ + + + Sbjct: 279 --GYFLIKGTEKVFIAEEQRFLSRIWITDYPSWDASYLSQIKREKINIKLVPSKRNESCK 336 Query: 309 LICAANMELSLDLLAKLSQSGHKRIETLF--TNDLDHGPYISETLRVDPTNDRLS----- 361 +I M + + G + F + LD I + Sbjct: 337 VITIYFMGTIIPIWVVFFALGVSSDKEAFDMIDILDCDASIVNIISSTIKESHEEFEGFR 396 Query: 362 ----ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 A + +++R + P +E+ + F Sbjct: 397 APGRACQYVDKLIRKSKFPPKESFDEYVCRYMFP----------------------SVNG 434 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 + ++K L+ +G + D+ D N+R+ ++ + + R E + + Sbjct: 435 VRSKALFLGYMVKCLLMAYSGNRKCDNKDDFRNKRLGLACQLLRRELWTHIKRAEWRMVK 494 Query: 478 RLSL---GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ------------FMDQNNPLS 522 + D + + ++A I+ + F + + + NPL Sbjct: 495 LMQRDLSNDGNLQDLRRYVDASIITNGLNRAFSTGSWRHPYLKARCSGVVATLRRTNPLQ 554 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++ R+ + A + R +P+ +G++C + TP+G G + +L Sbjct: 555 MMSDLRK----TRQWVAYSGAVGDARYPNPSFWGKLCFLSTPDGEKCGFVKNL--AVTAV 608 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES 642 + P ++ +S + N +L +L Sbjct: 609 VSSVVRKPLIDTFVSCGMKKLDDISLQDISGKDRIFLNGSLLGVCADPHELTLRLRSLRR 668 Query: 643 SLFSRDQVDYMDVS---TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 S QV+ +V+ ++ L + R R P Sbjct: 669 SKLIDPQVEIKRDKHHKEVRVLCDPGRILRPLLVVENLR--------RITRP-------- 712 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 +V+ + E+++ +++ K RS Sbjct: 713 ---------KDGLYSFQELIDQNIVELIGVEE------EEDIQCASGIRHLFSGEKEDRS 757 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 + T P LG + +P+ ++ +L+ Sbjct: 758 SGYTHCELDPSFLLGLSC-------------------------SLIPFANHDNGKRVLMQ 792 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 + + I +R L + P +V G Sbjct: 793 AEKISQQ---AIGYSPTNSHTRLDTLSHQIFYPQRPLFKT----------VVSYGLGKAE 839 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 G+ + + + +I + + +DS + + + Sbjct: 840 TAYSFGRKDDFNTPEYFNGQNAIVSINVHQGFNQEDSLVLNRASLERGMFRTLHLKSYKA 899 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + + + + + + K+D L + Sbjct: 900 QVENKEITRRLKHRESINFGKVQSKR---------------------GKVDSLDSEGLPY 938 Query: 1000 LGLTDEEKQNQLEQLAEQYD--ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 +G + + + +++E + K +K + ++ DD + V L Sbjct: 939 VGASLQSGDIVIGKVSESGEDHSAKLMHTEKGMVDKVVLSANDD----GVNFATVTLRQS 994 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R GDK A HG KGV+ ++ E+ P+ G DIV+NP G P+R GQ+LE L Sbjct: 995 RSPCVGDKFASMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPHGFPTRQTPGQLLEAAL 1054 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 G G A V + E + +A ++ T Sbjct: 1055 GKGIAMGGKVRYATPFTTPTVDVITEQLHKAGFSRWGEESVLNGQTG------------- 1101 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 R+ + V +G + +L H Sbjct: 1102 --------------------------------ERM---------KSLVFMGPTFYQRLVH 1120 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1297 + +DK+ R+TG VT+QP+ K +FGG +FGEME + A+GAA L E L SD Sbjct: 1121 MAEDKVKFRNTGPVHPVTRQPVEDKKRFGGVKFGEMERDCMLAHGAAANLHERLFTLSDF 1180 Query: 1298 VNGRTK------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSL 1333 + +P +L +E+ + Sbjct: 1181 SQMHICQACQRVANVIMRPAEGGSKKVHGPYCMFCRSAERIVRVNVPYGSKLLYQELFCM 1240 Query: 1334 GINIELEDE 1342 GI ++ + E Sbjct: 1241 GICLKFDTE 1249 >UniRef50_C6UN02 DNA-directed RNA polymerase n=1 Tax=Candidatus Hodgkinia cicadicola Dsem RepID=C6UN02_HODCD Length = 1267 Score = 559 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 313/876 (35%), Positives = 463/876 (52%), Gaps = 49/876 (5%) Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + + V + F SS Q+ DQ N LSE++H+ R++ +G GG+ A RDV H Sbjct: 411 QRKLQPVVSKLFRSSSACQYADQVNSLSELSHRLRLTCMGGGGVNARSADTRSRDVRKWH 470 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G+VCPIE+PEG +IGL+ L++YA+ G + T + K G++++++ L+ + + Sbjct: 471 FGKVCPIESPEGQSIGLVLQLAMYARVEASGHIATMFAKSRRGLISNQMLALNCFSQQAF 530 Query: 615 VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 IA ++ V + ++ + VD + Q+ S +LIPFLEH+ Sbjct: 531 SIAIFGASP------ASARVMSFKACKPAMCAISAVDLWPATNAQLFSPAVNLIPFLEHN 584 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 DA RALM +NM +QA+P PLVGTG ERAV + +G +A + VV DA+++V+ Sbjct: 585 DATRALMASNMLKQALPLAEPQAPLVGTGEERAVMLAAGHNLLADQHCVVVRADAAQVVV 644 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 P Y + + TRSNQ C V + ++ GDV+A+ S+D GE+ Sbjct: 645 YC------PCADAYKAYLVPEPTRSNQGVCRRLRVVVEPNQVLKAGDVVAECQSSDNGEM 698 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 +LG N+ VAFM WNG+N+EDSIL+SE V+ ++H+ +L T G E +T ++ Sbjct: 699 SLGANLLVAFMCWNGFNYEDSILLSEAVIARGLLDSLHVLKLKAKVLRTAFGDELVTNEL 758 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL------------- 901 P V E + L E G+V +G V D+LVGK++P Sbjct: 759 PMVAEKHKAHLSEQGVVSVGDTVCEHDVLVGKLSPVDYADSLDVATADAVATAGADDGGD 818 Query: 902 -------------LRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEKDKRALE 947 L GE VK +SLRVP GV +VIDV + + + +L Sbjct: 819 DGDSGGDDGLSVTLVNDMGENIRYVKSTSLRVPTGVECASVIDVSFAS----CEAEASLG 874 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + DL + G ++ AV G A K LE ++ + Sbjct: 875 ESALDACVKELDLIQRRYARRLGKVAKWAAVGFDG---ANACSKPDHGLVLEAKSSNAQA 931 Query: 1008 QNQLEQLAEQY-DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 Q + L + Y E+ F + A +I+ + VL + V L V++ I+ GDK+ Sbjct: 932 QQAISLLRQLYACEVDALFARASAAASARISCDGPNSASVLDEITVTLLVRKSIKAGDKV 991 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 +GRHGNKGVIS++ P EDMP+ +GTP+DIVLNPL VPSRMNIGQILE LG+ +G Sbjct: 992 SGRHGNKGVISRVAPAEDMPHLADGTPIDIVLNPLSVPSRMNIGQILEARLGLVGLALGA 1051 Query: 1127 KINAMLKQQQEVAKLRE-FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 + ++ Q E ++ A + + +DL S V+ LA L +G+ + P Sbjct: 1052 EFERVVDACQVADASSERELEGAKSKISSLFPSLDLRRASASRVLALARKLSRGVGLECP 1111 Query: 1186 VFDGAKEAEIKELLKLGD-LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 F EA IK L + L SG+++L+DG TG F++ VG +Y+LKLNHLVDDKM+ Sbjct: 1112 PFCHLSEACIKALCRRAGALDASGRLQLFDGVTGLPFDQQTAVGSIYVLKLNHLVDDKMY 1171 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 AR+TG YS+VTQQPL GKA GGQR GEMEVWAL++YG +Y L+E LT K DDV R M Sbjct: 1172 ARATGPYSMVTQQPLKGKANKGGQRLGEMEVWALQSYGVSYMLKEALTAKCDDVAARHVM 1231 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +I ++E ES +L++E+ SL ++ E Sbjct: 1232 ASSIAGCAPRVESSWGESLLLLVREMCSLCVDFRFE 1267 >UniRef50_P50546 DNA-directed RNA polymerase subunit beta n=1324 Tax=cellular organisms RepID=RPOB_ARATH Length = 1072 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 269/1142 (23%), Positives = 468/1142 (40%), Gaps = 182/1142 (15%) Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI- 274 + + K +++ ++ + +P L + + ++ + + + + Sbjct: 78 SELYVSAGLIWKTSRNMQEQRIFIGNIP--LMNSLGTSIVNGIYRIVINQILQSPGIYYQ 135 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE 334 +L+ + + + + G + + + + + + + +L S G E Sbjct: 136 SELDHNGISVYTGTIISDWGGRLELEI--DKKARIWARVSRKQKISILVLSSAMGLNLRE 193 Query: 335 TL-FTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFS 391 L + + +A++E Y+ G+P E+ + FF Sbjct: 194 ILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGGDPIFSESLCKELQKKFFH 253 Query: 392 EDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNR 451 R +L +GR N L + + L DI+ LI ++ G G +DD++HL N+ Sbjct: 254 -QRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNK 312 Query: 452 RIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSS 509 RIRSV ++ ++Q + L R+E VK + L PQ+++ + P++ + FFG Sbjct: 313 RIRSVADLLQDQLGLALARLENVVKGTIGGAIRYKLIPTPQNLVTSTPLTTTYESFFGLH 372 Query: 510 QLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 LSQ +D+ NPL++I H R++S LGPGGLT A F +RD+HP+HYGR+CPI+T EG N+ Sbjct: 373 PLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGRICPIDTSEGINV 432 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 GLI SLS++A+ ++G LE+P+ ++ Sbjct: 433 GLIGSLSIHARIGDWGSLESPFYELF---------------------------------- 458 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 E R + S+D+ +++ G SL AL + QA Sbjct: 459 -EKSKKARIRMLFLSPSQDE--------YYMIAAGNSL-----------ALNRGIQEEQA 498 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 VP + L E + + ++ +++ + + Sbjct: 499 VPARYRQEFLTIAWEEVHLRSIFPFQYFSIGASLIPFIEHNDANR-----ALMSSNMQRQ 553 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 L++ + T + + + G P +A+ L Sbjct: 554 AVPLSRSEKCIVGTGLERQVALDSGVPA-----IAEHEGKIL------------------ 590 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 Y + I++S G I + + + Sbjct: 591 YTDTEKIVLS------------------------GNGDTLSIPLIMYQRSNKNTCMHQKP 626 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 V G + G IL G +L + +L A + + +D+ L +S ++ Sbjct: 627 QVRRGKCIKKGQILADGAATVG-GELALGKNILVAYMPWEGYNFEDAVL-----ISECLV 680 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS----EELQILEAGLFSRIRAVLVAGGVE 985 ++T + K + + ++ K++ L+ L+ + + + G + Sbjct: 681 YGDIYTSFHIRKYEIQTHVTTQGPERITKEIPHLEGRLLRNLDKNGIVMLGSWVETGDIL 740 Query: 986 AEKLDKL--------PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKIT 1037 KL P DR L L + ++ L + + K+ + Sbjct: 741 VGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWVQKKGGSS 800 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 + I++VY++ KR I+ GDK+AGRHGNKG+ISKI P +DMPY ++G PVD+V Sbjct: 801 YNPE-------IIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMV 853 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 NPLGVPSRMN+GQI E LG+A + ++ + + + A + Sbjct: 854 FNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQT 913 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRT 1217 + + G+ R++DGRT Sbjct: 914 ANP---------------------------------------WVFEPEYPGKTRIFDGRT 934 Query: 1218 GEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA 1277 G+ FE+PV +G Y+LKL H VD +H RS+G Y+LVTQQPL G+++ GGQR GEMEVWA Sbjct: 935 GDPFEQPVIIGKPYILKLIHQVDVIIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWA 994 Query: 1278 LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG-MPESFNVLLKEIRSLGIN 1336 LE +G A+ LQEMLT KSD + R ++ + G +P ESF +L++E+RSL + Sbjct: 995 LEGFGVAHILQEMLTYKSDHIRARQEVLGTTIIGGTIPKPEDAQESFRLLVRELRSLALE 1054 Query: 1337 IE 1338 + Sbjct: 1055 LN 1056 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 64/336 (19%), Positives = 132/336 (39%), Gaps = 28/336 (8%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVFD 81 +P IQ + F +FI+Q GL I+ E Q +Y+L EP+ Sbjct: 12 IPGFNQIQFEGFYRFIDQ------GLIEELAKFPKIEDIDHEIEFQLFVETYQLVEPLIK 65 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 ++ +TYS+ L V L+ T ++++EQ +++G IPLM GT ++NG Sbjct: 66 ERDAVYESLTYSSELYVSAGLIW-------KTSRNMQEQRIFIGNIPLMNSLGTSIVNGI 118 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R++++Q+ +SPG+++ S+ +G +Y II G L+ E D K ++ R+ R+ Sbjct: 119 YRIVINQILQSPGIYYQSELD---HNGISVYTGTIISDWGGRLELEIDKKARIWARVSRK 175 Query: 202 RKLPATIILRALNYTTEQILDLFFEKV---IFEIRDNKLQMELVPERLRGETASFDIEAN 258 +K+ ++ A+ +IL+ F K ++ + F Sbjct: 176 QKISILVLSSAMGLNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGG 235 Query: 259 GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELS 318 ++ E + +L+K + + ++ + L+ Sbjct: 236 DPIFSESLCK-------ELQKKFFHQRCELGRIGRRNINWRLNLNIPQNNIFLLPRDILA 288 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + G ++ + +++ L+ Sbjct: 289 AADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQ 324 >UniRef50_A9TK27 DNA-directed RNA polymerase n=4 Tax=Embryophyta RepID=A9TK27_PHYPA Length = 1238 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 203/1400 (14%), Positives = 406/1400 (29%), Gaps = 296/1400 (21%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 +E++ R K + L+ L SF +F+E + S I +S Sbjct: 70 SEEEVARSAVAKI--IFKGRSLVEHHLRSFNEFMEYGLPAMF---EEAGSFDCIPDHS-- 122 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 V+ + I EV +G Sbjct: 123 -------------------------------------VLVDSGIGVRKWARIVYGEVAVG 145 Query: 126 EIPLMTDNGTFVINGTERV--IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW 183 + TF G + V ++ R + + + LY + R Sbjct: 146 K-----PYTTFTREGVKEVVDLLPHEARLRNLSYSAH----------LYVNMTLEVRSQG 190 Query: 184 LDFEFDPKDNLFVRIDRR--RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 +P+D + + D K+P + + D + Sbjct: 191 NKKTQNPEDMIETKTDTICVGKVPVMVNSSFCHLHGLSEKDSVAKGHCSFDDGG------ 244 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 F I+ + KV + + + K I + + Sbjct: 245 ----------FFIIKGSEKVLIAQEEKAHQSIYVSYLKRTDTWIATY--SPTWRGFNSNQ 292 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR-- 359 ++ + + L + + E++ D T+ R Sbjct: 293 MNRGKTFVKLRMRKKAELLVGVPGLTEPVPLVILFRALGTSSDKEFLESICYDSTDSRFH 352 Query: 360 ----------LSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 L E + G + + + F + V ++ + Sbjct: 353 DLLLSSIWDADLILEEFQSRISYPAGASAIKSVRDQILSVRFLGTKLRNSRHVPSVEAGK 412 Query: 408 SLLREEIEGS---GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 +++ + + + ++ +L G+ DD DH N+R+ G++ +QF Sbjct: 413 TIIGQLFVHTEGGYTRKAMLLGYMVNQLCSTFLGRRLEDDKDHFKNKRLDLTGQLLSHQF 472 Query: 465 RVGLVRVERAVKERLS---LGDLDTLMPQDMINAKPISAAVKEFFGSSQL---------- 511 R + +ER VK RL + D + + ++ ++ F Sbjct: 473 RKAMAHLERDVKRRLHPYLVKGRDLAPLKTYVTEAIVTKQMQSAFTLGNWNTNEGLKSSG 532 Query: 512 -SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV-RDVHPTHYGRVCPIETPEGPNI 569 + + NP++ ++H R+ P + R + +++GR+CP +T +G Sbjct: 533 VVAVLKRMNPMATLSHLRQFRLNLPPP----MKPTDPARHPNYSYWGRICPTQTSDGAEC 588 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH- 628 GLI SL++ + E P V + ++ + N + Sbjct: 589 GLIKSLALTCVVSSD-TPEEPVLHVLSDCGMHSLEEITPLTISMAEKIFVNGRWVGIFYD 647 Query: 629 ------FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG 682 V L R + D + + L+ L Sbjct: 648 YNATLAIVATLRQLRREQLLHGEIEVARD-PKTKAVHIHTDAGRLLRPLLIVK------- 699 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 E+ +A+ + + +A + + + Sbjct: 700 ----------------------EQKLAMSKQHLKTLRAMSKQESAEACW-NFLLEQQVVE 736 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 + L R + + P+ + LG Sbjct: 737 LLGTEEEEGALIALNRDD-----LERARKDPDAPLYTHSEIDVSYIFGLG---------A 782 Query: 803 AFMPWNGYNFEDSILVS-ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 + +P+ +N L E+ ++ R G + P V Sbjct: 783 SVIPFLDHNQASRNLYQAEKHCKQAMG----FYTSNLSGRSDCSGHQLFYPQKPLVTTRT 838 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 L + ++T + + +I + +DS + Sbjct: 839 WDYLKK-------------------------PEITNGQVAIVSIQC-CGYNQEDSIIMNR 872 Query: 922 NGVSGTVIDVQVF-TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 + + F T G E+ + + AK+ + L ++ F + L Sbjct: 873 ASIDRGLFRSMHFKTYRGEERHNVIEHFAKPSISIAKRSRNASLNKIDEDGFPHLGDYLE 932 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD 1040 G + K L + + + + ++L + + ++ + Sbjct: 933 KGDIIIGK---------LTAEMGNPKLADSSQRLRAH---------ENGRVDQVLLSSEE 974 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 D +I KV L RR Q GDK + HG KGVI + ED+P+ G DI++NP Sbjct: 975 D----GHRIAKVRLRCSRRPQAGDKFSSMHGQKGVIGAVLNQEDLPFTRQGVVPDIIINP 1030 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE-VAKLREFIQRAYDLGADVRQKV 1159 +P+R +GQ+LE+ LG G + + Q+Q K + + ++ Sbjct: 1031 HALPNRQTVGQLLESLLGKLMAVRGTQQSVAPFQKQSATRKFMDQLHQSEYQRGGSESMT 1090 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 + +T + Y + Sbjct: 1091 NGTTGMRLNSLISIGA-----------------------------------TFY-----Q 1110 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHAR-STGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 + + V +DK+ R S G +T+QP+ + GG +FGEME + Sbjct: 1111 RLDHMV--------------EDKIKYRGSGGPVDALTRQPVKNRKNMGGVKFGEMERDCM 1156 Query: 1279 EAYGAAYTLQEMLTVKSDD----VNGRT------------KMYKNIVDGNHQMEPGMPES 1322 +GA+ TL+E + SD V + K G H ++ +P S Sbjct: 1157 IGHGASVTLRERCFLLSDPYAMLVCSSCRRPSGHTDPSRRRFCKFCCTGKHVVQIQIPYS 1216 Query: 1323 FNVLLKEIRSLGINIELEDE 1342 +L +E+ S+GI + LE + Sbjct: 1217 CKLLWQELLSMGITLFLETK 1236 >UniRef50_Q4A245 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 86 RepID=Q4A245_EHV86 Length = 1156 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 200/1398 (14%), Positives = 388/1398 (27%), Gaps = 324/1398 (23%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQYVSY 73 + ++ ++ Q++S+ FIE + + + + S + + + + Sbjct: 10 WSVIGDYINSVSPVAHQIESYDHFIENQLPY---IISEGSDISYMHSSGKVSHHVHFTNP 66 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 + P + K ++ + +T + Sbjct: 67 SVNRPAIQESD------------------------------GFYKPITPHIARLRGLTYS 96 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 T V+V +H + ++ II Sbjct: 97 ST--------VVVDVIHDRINHTVSPPT----LINRKVFRNVIIAQ-------------- 130 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +P + + DL + E F Sbjct: 131 ----------IPVMVRSKLCYLADVSENDLSADAKKH-------------ECKVDPGGYF 167 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK-------VVAKDYIDEST 306 I N K + + + T K K + + + D S Sbjct: 168 IISGNEKTLIPQTKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMNINDISN 227 Query: 307 GELICAANMELS-------LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV--DPTN 357 GE+ L L I N I + N Sbjct: 228 GEVPVITCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQN 287 Query: 358 DRLSALVEIYRMMRPGEPP--TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 A+++ + T+E+ E + + + + Sbjct: 288 YSRDAIMDWVGRNVTSDTTRATKESREKYID------------HIITSELAPHMGLVNNP 335 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG-----LVR 470 + I ++++L+ + G+ VDD D N+RI S G + R + Sbjct: 336 ETNKKKMIFIGHMIQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQG 395 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL----------------SQF 514 + +++++ T ++++ K I++ +K F + Q Sbjct: 396 LSTQLRKQVESPREATFNVGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQI 455 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 + + ++ + R+I+ + RE R +HP+ +G VC +TPEG GL+++ Sbjct: 456 LPRLTTMATLGASRKINT----PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSN 511 Query: 575 LSVYAQTNEYGFLE-------TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG 627 L++ + ++ T + T Y+ N I +D+ Sbjct: 512 LAITTRIRIGAPMQPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIK 571 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 + + R G + + ++ V S +L+ L D + MQ Sbjct: 572 EIATQMRSLRRHGNLPFDCS--ISISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQN 629 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 AV R G+++Y+D++ + M Sbjct: 630 PAV--------------------VPNKYTRMLREGIIEYIDSAE------QTNMRVAIHH 663 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 DI + + P+ G + V+ +P+ Sbjct: 664 TDIEQ-------------------------DEYTHIEIHPALLTG-------ICVSQIPF 691 Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 +N I ++ + R +G T P V L Sbjct: 692 CDHNQSPRIAYQAAQCKQAIG----LYTTNFAERLDTVGHVLATPQKPLVTTRLEELLGT 747 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 + V G + + AI + DS L + + Sbjct: 748 -------SVVRSGAV------------------PIVAIMCYSGFNQDDSVLLNQSSIDRG 782 Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQ----LKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 + + E+ +IE + + + ++ I G Sbjct: 783 LFTSFAYHTIRDEEKGTGADIERFENPKNIPGCSGMKEADYSKIDDKGMPIIGKTFYNGD 842 Query: 984 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLA 1043 V K+ + + + + DE Sbjct: 843 VLIGKVVSMSLLQADPKEGEVRRDTKRDRSHVLRTDE-----------PVVVDAVFLSKT 891 Query: 1044 PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGV 1103 P VKV R GDK + RHG KGV P D P +G DI Sbjct: 892 PEGHGYVKVRTRAIRIPMVGDKFSARHGQKGVCGVTMPAADFPCTADGVAPDI------- 944 Query: 1104 PSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 I+ H + IG + Sbjct: 945 --------IINPHAIPSRMTIGMLM----------------------------------- 961 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 E++ +G F G I + L+ + G LY+G +GE E Sbjct: 962 ----EMVLSKVACYEGETQDGTPFTGNNIELIADRLETHGMQRYGNEMLYNGMSGEMLES 1017 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 + + Y +L H+V DK HAR+ G+ L+T+ P G+++ GG R GEME ++ ++GA Sbjct: 1018 MIFIAPCYYQRLKHMVVDKSHARNRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGA 1077 Query: 1284 AYTLQEMLTVKSDDV----NGRTK-----------------MYKNIVDGNHQMEPGMPES 1322 ++ L +SD + ++ G H +P S Sbjct: 1078 GDVAKDRLFEQSDIFECVACEKCGHFAREGTDDTSVKNSGMWCEHCKTGKHCTHTQLPYS 1137 Query: 1323 FNVLLKEIRSLGINIELE 1340 +L++E+ + I+ LE Sbjct: 1138 MKLLIQELAAAHISATLE 1155 >UniRef50_Q236N3 DNA-directed RNA polymerase n=2 Tax=Oligohymenophorea RepID=Q236N3_TETTH Length = 1141 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 174/1203 (14%), Positives = 355/1203 (29%), Gaps = 218/1203 (18%) Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPE 244 + F+ K +R K+P + N L + + E Sbjct: 102 ELTFNGKKEDSLRKVNIGKMPIMLGSSHCNLIKALELGQVHK---------------LQE 146 Query: 245 RLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE 304 F I+ KV++ + + R + +K+ + V + K + I Sbjct: 147 CANDPRGYFIIKGVEKVFLIQEQLADNRIFIEEDKNKELVANVKSNTVDTKSITSLIIKN 206 Query: 305 STGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRVDPTND 358 + ++ + + LL G + + +F + E + Sbjct: 207 HKIYVKVSSFSKP-IPLLIFFKAYGVESEQEIFQLIGTEEHLLNRLALCLEDIEQSQVYT 265 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + AL + + +RP F++ +S A + + Sbjct: 266 QQQALEYLSKRLRP----------KTFQDKKYSSRNPVDEARDIITNVVLCHIPCKNYNY 315 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 + + ++LI+ + ++D D+ GN+R++ G E F + V++ Sbjct: 316 YPRAIFLGLMARRLIEALDDPSKIDKRDYYGNKRMKCAGWYLELLFEDKFKQFNMMVRKE 375 Query: 479 LSLGDLDTLMPQDMI----------NAKPISAAVKEFFGSSQLS------------QFMD 516 LS I N I+ + + + Q + Sbjct: 376 LSKEIEKHKNKSYPIKNRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDTVGVTQVLA 435 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + + ++ I R+++ + R R + +H+G VCP +TP+G + GL +LS Sbjct: 436 RISYIAAIGMMTRMNS----QFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLS 491 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE--EGNYVIAQANSNLDEEGH----FV 630 + A + + + ++I + S+ E E + N + F Sbjct: 492 LMAHITIEEK-KNVLSTIALNLGMEDIGHYSSGEIHEDKNYMVFLNGQIIGMHRDPEAFA 550 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 + L R +G+ + + + + L L + + L+ + Sbjct: 551 QKLRFMRRRGKIGTTISISTNSEKRA-VYLDTDDGRLCRLLIVVENGKPLITNDHLNDLK 609 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 ++ L R G+++Y+D + I I Sbjct: 610 EKRKSYLDL-------------------IRMGLIEYIDVNEEDNCY-----------IAI 639 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 RS + + P T LG + +P+ + Sbjct: 640 KQEDIPNRS-------------------KTTHMEIDPLTLLG-------VVSGLVPYPHH 673 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N + ++ I ++R + + I P + + Sbjct: 674 NQASRNTFQCAMGKQALG----IIGSTSMNRVDTILYQLIYPQTPLLKTKVIEYAGYDKF 729 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 A+ D++D+++ + + Sbjct: 730 PA-------------------------GHNASIAVLSYSGYDIEDATVLNKSSLDRGFGR 764 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 VF + E K + L+ K+ + + + + A L G Sbjct: 765 TMVFKKYETEIQKLKMSGLTELLRGPPKEAEGSYKKKQNRVLKKFGA-LDDDGTPIVGAS 823 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD---LAPGVL 1047 D + Q + + + K +K+ + D Sbjct: 824 INNGDVLFNKYTPLLTLEQQRGRDILNNNSVSEYIHNPTTFKGKKLARIDRVIRSQQDGN 883 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 I+K + RR + GD SR Sbjct: 884 VIIKTIVRETRRPEYGD-------------------------------------KFSSR- 905 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 G K L QE E + ++ Sbjct: 906 ----------------HGQKGIIGLIVNQEDMPFSEKGWVPDLIMNPHGYPSRMTVGKLL 949 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 E++ + G F G K A++ +L +G+ + G TGE + V Sbjct: 950 ELLGSKAAVLSGQFKYGTAFGGDKMADLSSILVQNGFSYTGKDVIISGITGEYMQCYVFC 1009 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G ++ +L H+V DK+HAR+ G + +T+QP G+A+ GG R GEME +L A+ ++ L Sbjct: 1010 GPVFYQRLKHMVADKVHARAKGRVTTLTRQPTEGRAKDGGLRLGEMERDSLLAFASSNLL 1069 Query: 1288 QEMLTVKSDDVNGRTKMYKN---------IVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 E L + SD + + + + + MP + +L +E+ S+ I + Sbjct: 1070 IERLMISSDKFSVQVCEKCGFIQHTNSCKMCQTDQVSKVVMPYACKLLFQELLSMNIKPK 1129 Query: 1339 LED 1341 L Sbjct: 1130 LNL 1132 Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 59/460 (12%), Positives = 117/460 (25%), Gaps = 89/460 (19%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M E R + L +S + SF FI L+ S + Sbjct: 1 MASKTAEPLREKT--RIIDSYLAHNGFVSHHIQSFNYFI------NIKLQQIITSSMNKE 52 Query: 61 ---SYSGNSELQYVSYRLGEPVFD------VQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 + L+Y + P D QE ++ +Y+ + V L + Sbjct: 53 LRLDTDNSFLLEYTKIYIEPPAHDNKTMMLPQEARLSNSSYAGNIYVDCELTFNGK---- 108 Query: 112 GTVKDIKEQEVYMGEIPLM-------------------------TDNGTFVINGTERVIV 146 K+ ++V +G++P+M G F+I G E+V + Sbjct: 109 ---KEDSLRKVNIGKMPIMLGSSHCNLIKALELGQVHKLQECANDPRGYFIIKGVEKVFL 165 Query: 147 SQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPA 206 Q + F + + + + +D ++ I + K+ Sbjct: 166 IQEQLADNRIFIEEDKNK---------ELVANVKSNTVD-----TKSITSLIIKNHKIYV 211 Query: 207 TIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKG 266 + ++ L +FF+ E Q+ E L + +E + V Sbjct: 212 KVSS----FSKPIPLLIFFKAYGVESEQEIFQLIGTEEHLL-NRLALCLEDIEQSQVYTQ 266 Query: 267 RRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLS 326 ++ ++L + + + C + L Sbjct: 267 QQALEYLSKRLRPK-TFQDKKYSSRNPVDEARDIITNVVLCHIPCKNYNYYPRAIFLGLM 325 Query: 327 QSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFE 386 + ++ E Sbjct: 326 A--------------------RRLIEALDDPSKIDKRDYYGNKRMKCAGWYLELLFEDKF 365 Query: 387 NLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 F R +LS N+S + S + DII Sbjct: 366 KQFNMMVRKELSKEIEKHKNKSYPIKNRVESILEKNHDII 405 >UniRef50_Q583H5 DNA-directed RNA polymerase n=6 Tax=Trypanosomatidae RepID=Q583H5_9TRYP Length = 1190 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 192/1292 (14%), Positives = 373/1292 (28%), Gaps = 204/1292 (15%) Query: 101 RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVI---------NGTERVIVSQLHR 151 ++ + + ++ IP M + ++ Q Sbjct: 45 EIISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESEPDQYRL 104 Query: 152 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID---RRRKLPATI 208 S + S + P D +D + + I R + P Sbjct: 105 SLEDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSREEQPYRT 164 Query: 209 ILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 L+ + I + + ++ ++ + E + F + KV + + R+ Sbjct: 165 FLQNMELGR--IPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLIAQERQ 222 Query: 269 ITARHIRQLEKDDVK-LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 + I+ VE K + E L +A++ + Sbjct: 223 AANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGH-GYENLLCRVAQMDE 281 Query: 328 SGHKRIETLFTNDLDHGPYISETLRVD-PTNDRLSALVEIYRMMRPGEPPTREAAESLFE 386 D+ I +T+ D L L E TR+ A Sbjct: 282 L-IPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSMEDASTLEIFTRDEALWFIG 340 Query: 387 NLFFSED-RYDLSAVGRMKFNRSLLREEIEGSGIL--SKDDIIDVMKKLIDIRNGKGEVD 443 +D R +L + R LL I ++ +L+ + G+ E Sbjct: 341 KRLGKQDSRENLQREAQDLLMRDLLPHMGVDCAADRGKCLFIGYMVHRLLLLALGRREDT 400 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL---SLGDLDTLMPQDMINAKPISA 500 D D LG++RI G + Q LV+V R + + + S + +++ + I+ Sbjct: 401 DRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVVSFGRILHNRLITD 460 Query: 501 AVKEFFGSSQ------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 ++ + +SQ +++ S +++ RRI ++ R Sbjct: 461 GMRRCLATGNFGDLKSGNIKTGVSQTLNRLTYSSSLSNLRRIQN----PISASSKATRPR 516 Query: 549 DVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSA 608 ++H T +G +CP+ETPEG +IGL+ +L++ + + V + LS Sbjct: 517 NLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQAVQSRITGFHSIALSD 576 Query: 609 IEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDY---MDVSTQQVVSVGA 665 + + N L E L+ ++V + +V S G Sbjct: 577 LADVRVARVFVNGTLIGVHGDPERLLRDLRARRRGGELSNEVSIVRDIRDREIRVFSDGG 636 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 + L + +R + +A + + G V+ Sbjct: 637 RCLRPLFVVEKSR-----------IKLQKAGIGELLEPSTTLGGRREISWNKVMKKGYVE 685 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 +D + M P E G + Sbjct: 686 LIDCEEEDSLL--IAMVPSEVGKN----------------------------YFYSHCEM 715 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 PS LG + + +P+ +N + ++ I+ R Sbjct: 716 DPSMILG-------ICASIIPYPNHNQSPRNTYQSAMGKQ--AMGIYASNFN--MRMDTT 764 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 P V A+S L + AI Sbjct: 765 AHVLFYPQKPLVRTKAMSY-------------------------MRSNDLPAGHNAIVAI 799 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQL--KQAKKDLSEE 963 + +DS + + V + ++K+ E ++ ++ + Sbjct: 800 ACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEEKKREGREMFEIPDRKVCHVKRAD 859 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 L+ + ++ G + K +P+ E ++ ++ ++ + Sbjct: 860 YTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTLSEESPVS-------DTRILKRDCSISS 912 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 +K R +T+ + KV + + GD Sbjct: 913 RAAEKGVVDRVMLTEN-----KGNRFTKVRIRTIKIPNIGD------------------- 948 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 SR G K ++ +QE Sbjct: 949 ------------------KFCSR-----------------HGQKGTNGIQFRQEDMPFNH 973 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 + ++ E + KG + F + + L Sbjct: 974 DGISPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFCSVVVEDFGKALTQLK 1033 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 L G RLY+G TG + + G Y +L HL DK+HAR G + +QP G+A Sbjct: 1034 LNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHARPRGPLQPLVRQPTEGRA 1093 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK----------------MYKN 1307 GG RFGEME + +YGA+ L+E L SD + + Sbjct: 1094 HEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNMCGTICAADTDQNLYKCQG 1153 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + +H + MP + +L +E+ S+ I L Sbjct: 1154 CDNDSHISQVLMPYACKLLFQELMSMAILPRL 1185 Score = 99.5 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 46/207 (22%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAF----RSV 56 M T + L+ Q+DS+ F+ + P L Sbjct: 30 MENVNTADIDSEDIWEIISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQF 89 Query: 57 FP---IQSYSGNSELQYVSYRLGEPV-------------FDVQECQIRGVTYSAPLRVKL 100 P ++S L +G P EC++R +TY A +V L Sbjct: 90 DPGVHVESEPDQYRLSLEDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTL 149 Query: 101 RLVIYEREAPEGTVKDIKEQEVYMGEIPLM------------------------TDNGTF 136 + +Y Q + +G IP+M G F Sbjct: 150 AIRVYRSREE--QPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYF 207 Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGK 163 ++NGTE+V+++Q ++ + + K Sbjct: 208 IVNGTEKVLIAQERQAANHVYAFTRPK 234 >UniRef50_A8B9W7 DNA-directed RNA polymerase n=3 Tax=Giardia intestinalis RepID=A8B9W7_GIALA Length = 1293 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 211/1460 (14%), Positives = 436/1460 (29%), Gaps = 310/1460 (21%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG------NS 66 K + L ++Q+DS+ F++ ++ S PIQ N Sbjct: 12 KVWKVVDSWFYCRGLAAMQIDSYNHFVKHT------MKNIMASFPPIQVTRTENFCCYNH 65 Query: 67 ELQYVSYRLGE-PVFDVQECQIRGVTYSAPLRVKLRLVI--YEREAPEGTVKDI--KEQE 121 L + +L +C+I+ +Y A ++VK+ I Y EG V+++ + + Sbjct: 66 ILSFSDPQLEPNVHIKPNDCRIQSSSYMAAIKVKISYTIQQYSFSNNEGLVQEVTYEPKL 125 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 + P+M ++ +N T +V S + + + + +I G Sbjct: 126 IDFCLFPVMVNSCLCYLN-TNKVAGSDIKAHRIINDECPYDEGGYFIIRGAEKAVIAQEG 184 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL 241 + P L + D K+P T L + N T + + Sbjct: 185 NR------PNRLLILPGDPGSKIPYTAQLVSTNSTKNLHSKVVLK--------------- 223 Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 + G+ + + ++ + D + + + A+D Sbjct: 224 ----------YWSTNKWGRTIQDINQPQITFTMQGIRDDLPLFLLILALWQDNVYAARDL 273 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 + + L + L T P + + Sbjct: 274 LS----------------------IVVPDESDTELIEHLLPSYNLFCST----PQSSKDK 307 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 + + + GE ++A++ ++ L L +G + Sbjct: 308 CIEFLAGRLVVGEQ--MDSAKAKYDRLMSHLSTRLLPHIG-----------VTPEFHLDK 354 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS- 480 I + L+ G+ DD DH G +R++ G + ++FR R + +L Sbjct: 355 AFFIGYMTNLLLQTVVGRRSPDDRDHWGGKRLQLTGSLLADKFRFEYELFLRRLARKLHD 414 Query: 481 --------------------------------------LGDLDTLMPQDMINAKPISAAV 502 L + IS + Sbjct: 415 TGSILKVKEDISMVSPNIEGSSFIPQSKYDTHGKVPGLEDPRRLLDRIKVAATSYISKNI 474 Query: 503 KEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD 549 + SQ + + + S ++ RR S+ + R Sbjct: 475 TSALSTGTWKTNEVVGNTKSGVSQSLVRLSYTSALSQIRRSSS----SVEETSKAIGPRL 530 Query: 550 VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN-EYGFLETPYRKVTDGVVTDEIHYLSA 608 +H T +G +CP ETPEG +GLI + S+ A + E RK+ H + Sbjct: 531 LHTTQFGYMCPAETPEGAKVGLIKNFSLMANVTLDNPKDEHDLRKLLTEYRVQASHGPIS 590 Query: 609 IEEGNYVI-----------AQANSNLDE------EGHFVEDLVTCRSKGESSLFSRDQVD 651 + + + + N + + DL R +G+ + Sbjct: 591 VLKSFHTVTNAKKLVSDVKIFLNGSWLGFIDREYVQRLITDLKRWRFEGKINREVSIS-Y 649 Query: 652 YMDVSTQQVVSVGASLIPFLEHD--DANRALMGANMQRQAVPTLRADKPLVGTGMERAVA 709 + S + + D + L A+ + ME+ + Sbjct: 650 LAHKQEISISSDEGRVTRPVFVVITDIHPTLKLVTNLSLAITEEDVETLATIPQMEQWNS 709 Query: 710 VDSGVTAVAKRGGVVQYVDASRIV-------IKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 + SG + +++++D + I ++E+ DI + Sbjct: 710 LLSG---LGTGKCMIEFLDPNEEEMALICMDIYHFKEEIQKAHTIRDIILAHGEDNAINY 766 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 + +P L PS L + +P+ +N L + Sbjct: 767 IKAHNIPL------ANNYTHLEIHPSMVLS-------AITSLIPFPDHNQSPRNLYQASM 813 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 ++ I+ T +P V ++ + + Sbjct: 814 GKQAVG--IYALNYLKRFD-TSGINVMHYPQLPLVTTRSMPHVKFRYLPA---------- 860 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS-GTVIDVQVFTRDGVEK 941 + ++ AI + +DS + + V G + T + + Sbjct: 861 ---------------GQNVIIAIAVYSGFNQEDSLIMSQSAVDRGFMRATYYHTYEEMIS 905 Query: 942 DKRALEIEEMQLKQAKKDLSEELQ---------ILEAGLFSRIRAVLVAGGVEAEKLDKL 992 + ++++ + + ++ LEA R+ + + + K+ Sbjct: 906 SAASSINAPDRIEKFCRPIGPNIKGIKDPGCASYLEADGLPRVGNAVNSQRLIIGKIRPN 965 Query: 993 PRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK---I 1049 R T + + L+ E+ + ++ +++G D + + Sbjct: 966 KRSMNSRAVSTYDFQDVSLKVKMEETGRVDSVIIAPDLREQSFLSEGVDSNTTGAEGSLL 1025 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 KV + R Q GDK + RHG KG + + ED+P+ +G DI++NP +PSRM I Sbjct: 1026 AKVRVRSSRVPQLGDKFSSRHGQKGTVGMLLRHEDLPFTLDGITPDIIMNPHAIPSRMTI 1085 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQ---QQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 GQ++E+ G +++ ++ + + ++ Sbjct: 1086 GQLMESVASKLGALSGHEVDGTAFNAPPGSTDKQIAADLHARGYQKHNYEAMMNG----- 1140 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 G + +F G Sbjct: 1141 ----------MTGEMMTYRIFIG------------------------------------- 1153 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 + +L H+V DK+ +R+TG +T+QP G++ +GG R GEME A A+GA Sbjct: 1154 --PTFYQRLKHMVLDKISSRNTGPIVTLTRQPNEGRSNYGGMRIGEMEKDAFIAHGATAI 1211 Query: 1287 LQEMLTVKSD------------------------DVNGRTKMYKNIVDGNHQMEPGMPES 1322 L++ L SD + + + +P + Sbjct: 1212 LRDRLLFSSDVSEFLVCQNCGIICWHADSRKLTTKKSPHCMICSESSTTDSFARITIPYA 1271 Query: 1323 FNVLLKEIRSLGINIELEDE 1342 + +EI +G+ +E E Sbjct: 1272 AKLFFQEIIGMGVFPRIEVE 1291 >UniRef50_Q4N2L4 DNA-directed RNA polymerase n=2 Tax=Theileria RepID=Q4N2L4_THEPA Length = 1235 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 200/1421 (14%), Positives = 401/1421 (28%), Gaps = 315/1421 (22%) Query: 29 SIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIR 88 ++SF FI+ ++ P+ L+ P Sbjct: 13 ESHVESFNTFIDHYSFNM------VNNIPPVYITYNADSLK----SFLNPKDTPY----- 57 Query: 89 GVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQ 148 VK+ ++ + P G+E + SQ Sbjct: 58 --------YVKVSIISLKIGYPTRP--------------------------GSECIGTSQ 83 Query: 149 LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATI 208 + Y A ++ G +F +++ + +P + Sbjct: 84 ----------KMYPRHAKISHTTYEAPLVVTFG----IKFFESESIITKEVPVGHIPIMV 129 Query: 209 ILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 N ++ + + F I+ N K+ + Sbjct: 130 RSNRCNLKGLSGEEMIKQGEDADE----------------PGGYFIIKGNEKMLRQLIVP 173 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDE-STGELICAANMELSLDLLAK--L 325 + I + + + EY D + L N ++ + + Sbjct: 174 RSNYPIAFKSDSNSQKNVLFTEYSIFMRCQSDLDGTCVSNYLHLTINKRCMFRVIVRNSI 233 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE-IYRMMRPGEPPTREAAESL 384 + L + + L N ++ L I+ M +P + Sbjct: 234 VLVPLFLLLRALLPFLSEDEFKRKLLENCSNNQEMTVLYHRIFLDMVQCDPVLSD--IDF 291 Query: 385 FENLFFS---------EDRYDLSAVGRMKFNRSL---LREEIEGSGILSKDDIIDVMKKL 432 +N + +Y + L S + ++ + KL Sbjct: 292 IQNRYLYRLGKACWNQVSQYLHPGSTFEECAHHLIKYFVIIHAKSNLDKFRTLLFMFNKL 351 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLSLGD------- 483 +++ NG + + D + + G+ + L ++ L + + Sbjct: 352 VNLSNGNIQSESYDSFAFQELLLPGQSYSCILKESLYLSLTRIRTVYNLEINNFLNHLKG 411 Query: 484 --------------------------LDTLMPQDMINAKP------ISAAVKEFFGSSQ- 510 + ++ N I+ V F + Sbjct: 412 KRGFKRNYAGVGKLENLDQDLEEEMVRKFMNSVNLFNFAINKVAPEITKKVHHFLSTGNA 471 Query: 511 ------LSQ------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRV 558 L+Q +D+ N +H R ++ G + + +VR + +G + Sbjct: 472 FNTHYELNQNTGFALVLDRINYHRFSSHLR---SVHRGNIFMKMRSTQVRKLLGETWGFI 528 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE----GNY 614 CP+ TP+G GL+ LS YA+ + + + + +H + + + Sbjct: 529 CPVHTPDGAPCGLLLHLSQYAKPVTTPNKPSYLNSIKSFLKSQPLHISGSTNKVNGGNDR 588 Query: 615 VIAQANS------NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 + + NL++ F + L T ++ + + + + V +S+ Sbjct: 589 IPLVVDGIPISYVNLEDVEEFYDKLKTSKNLEKFGMCRHFETCAIRDK----FGVFSSIY 644 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 R + + + E + + Sbjct: 645 IMTFPGRLVRPVRNIKDNQIELIGPITQLWSTIAINEYELNKSHNKLLDLQAN------- 697 Query: 729 ASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 M + + +L N P + ++ +L+ S Sbjct: 698 ---------PSAMNKVQVPKPLKSLKDNELDN-------CPVLYEYVELDMCCILSLSAS 741 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 P++ +N + +++++ H Q + Sbjct: 742 L---------------TPFSNHNQSPRNMYQCQMLKQSVGIPFHSQFYRSEVKT----YV 782 Query: 849 EITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGE 908 + P V K G + AI Sbjct: 783 LTSLQRPLVATKEYEK-------------------------MGFQDYPTGVNCVVAIIAH 817 Query: 909 KASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM-----QLKQAKKDLSEE 963 D++D+ + V + + ++ ++ + +A +E KD Sbjct: 818 SGFDMEDAMILNKASVDRGLFNSFIYKSKVIDLNSQASSTKERGGTVEYFNNMDKDSKLI 877 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 ++ L+ R+ L + + K N + +Y E Sbjct: 878 VKKLDFDGLPRLGEKLTKNS--------------PFYRIEERGKNNIVNDKVVKYTEEPA 923 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLK--IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 ++ + +IT GD ++ LK + L V R GDK A RHG KG++S + P Sbjct: 924 IVDQITLVGKSEITVGDKISCPGLKHDRAIIKLRVLRSPIVGDKFASRHGQKGILSAVWP 983 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 EDMP+ ENG D++ NP G+PSRM IG+++E G A G ++ Q Sbjct: 984 TEDMPFLENGIVPDVIFNPHGLPSRMTIGKLIEGMAGKVASIYGKPQDSTCFQAYYSE-- 1041 Query: 1142 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 + + ++ + L Sbjct: 1042 --------NPENGDEEMEEVDV----------------------------VDYFGKSLIK 1065 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 G +Y G G + + + VG +Y +L H+V DK RSTG +T+QP+ G Sbjct: 1066 SGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVRSTGPVDTITKQPVKG 1125 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN-------------- 1307 + GG RFGEME AL A+G A LQ+ L SD Sbjct: 1126 RKNLGGIRFGEMERDALIAHGTANLLQDRLLHCSDAHMAYVCPKCGSILSPSISSLEANT 1185 Query: 1308 -------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + + +P + E+ ++ I I+L Sbjct: 1186 KRQVSICTICQVNCKLVTIPYVLRYVANELATMNIGIKLHL 1226 >UniRef50_Q8I5X9 DNA-directed RNA polymerase n=8 Tax=Plasmodium RepID=Q8I5X9_PLAF7 Length = 1450 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 171/1300 (13%), Positives = 384/1300 (29%), Gaps = 204/1300 (15%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD-PKDNLFVRIDRR 201 + +V Q S F + ++ I + ++ + Sbjct: 253 KGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDEHFYVEFLDITVGTPSVEENMIET 312 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR-------------- 247 + P R L Y+ +D+ + K I N +++ +P LR Sbjct: 313 KLTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRLPVMLRSDICVLNNKSEEEL 372 Query: 248 --------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 F ++ +V + + + R I +++ + K Sbjct: 373 MKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRIIVEMDIKHNICATITSTTAESK-SRC 431 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRV 353 + ++ + + + + L G++ + +F H Y+ L Sbjct: 432 AIVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQMIGSHKNYVNGILLSLYELYN 491 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE- 412 + L AL+ I + +RP + S+ E +E + + + Sbjct: 492 ENIKTNLDALLYIGKKIRP-RLLAKGFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHIQQ 550 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 + + I ++++++D N K E+DD D+ GN+R+ G++ F R Sbjct: 551 KSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNKRLELAGQLISLLFEDLYKRFY 610 Query: 473 RAVKERLSLG--------------------DLDTLMPQDMINAKPISAAVKEFFGSSQL- 511 +K+++ + + + I+ ++ + Sbjct: 611 FTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFRNLPKDIITRGMQTAISTGNWN 670 Query: 512 -----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 SQ + + + ++ I R+++ + R R + P+ +G +CP Sbjct: 671 IKRFKMEKSGVSQVLSRLSFIACIGMMTRLNS----QFEKGRKVSGPRALQPSQWGVLCP 726 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE--GNYVIAQ 618 +TPEG + GL+ +L++ ++ + ++ L+ E Sbjct: 727 CDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDSLTGEEIYKEGVFFVI 786 Query: 619 ANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 N L F++ + R G+ F +++ + + + G L L Sbjct: 787 LNGILLGVHKRPQKFMQRIRYLRRYGKIGQFVSIYDNFLHNA-IYISTDGGRLCRPLIII 845 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 + ++ + + L+ + + + V+ + Sbjct: 846 ENGKSKLLPQHIKALENGTINFFDLLKSSVIEWIDVNEQNNLLIALN------------- 892 Query: 735 KVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL 794 + L P T LG Sbjct: 893 --------------------------------------ESDISLSTTHLEIDPLTILG-- 912 Query: 795 ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI 854 + +P+ +N + ++ R L + Sbjct: 913 -----VVAGLIPYPNHNQSPRNTYQCAMGKQAIG----AIGYNQFVRCDTLLYLLVYPQK 963 Query: 855 PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK 914 P V + ++ + + + A+ D++ Sbjct: 964 PLVKSKTIEFINFEKLPA-------------------------GQNAIVAVMSFCGYDIE 998 Query: 915 DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL-----------------EIEEMQLKQAK 957 D+ + + + + VE K + + + +++ Sbjct: 999 DAIVMNKSSIDRGFGRCMSLRKHSVELKKYFNGSNDIVLPSPLVINKLQQQRKEREIKSE 1058 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 +E ++ + K+ + G + +++ + Sbjct: 1059 IKNEKEKDGIKQEHHHNNIDSKNNKSSYNNNVSKIDNVKKDSYGHKNISNESKDDIKKMA 1118 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKI----VKVYLAVKRRIQPGDKMAGRHGNK 1073 +++ ++ + V K +K ++ ++ D K Sbjct: 1119 NKDIRKYHSLDMDGVASIGYLIKEGQLYVNKFSPKNIKDHVKDIGKVDINDFKINEIKYK 1178 Query: 1074 GVISKINPIEDMPYDENGTPVD-IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAML 1132 V + G + I++ +P + G K L Sbjct: 1179 SVYPSYIDKIIFTENSEGLKLYKIIMRQTRLPE----------LGDKFSSRHGQKGVVGL 1228 Query: 1133 KQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKE 1192 QE E + ++ E++ + G +F G Sbjct: 1229 LVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFSGTPF 1288 Query: 1193 AEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYS 1252 EI E+L S + LY G TGE E + +G +Y KL H+V DK+HAR+ G Sbjct: 1289 EEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGPRQ 1348 Query: 1253 LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--------- 1303 L+T+QP G+++ GG R GEME L AYG + L E L + SD N Sbjct: 1349 LLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICEDCGMMGYD 1408 Query: 1304 -MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + MP + +L +E++++ + ++ + Sbjct: 1409 LYCTFCKKCDKNIVIQMPYACKLLFQELQTMNVFPKIIVK 1448 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 63/426 (14%), Positives = 126/426 (29%), Gaps = 56/426 (13%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSEL 68 + + + P L V L+ ++S+ FI+++ + + A + + + Sbjct: 237 NTLNEKWKLLPAYLKVKGLVKQHIESYNYFIKREIKT---IMNATTNKIIKSDIDEHFYV 293 Query: 69 QYVSYRLGEP---------VFDVQECQIRGVTYSAPLRVKL-----------------RL 102 +++ +G P Q C+ R +TYSAP+ V + RL Sbjct: 294 EFLDITVGTPSVEENMIETKLTPQICRQRDLTYSAPIYVDVEYVKGNSIITKNNVEIGRL 353 Query: 103 VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKG 162 + R +E+ + +GE P G F++ GTERV++ Q S Sbjct: 354 PVMLRSDICVLNNKSEEELMKLGECPY-DPGGYFIVKGTERVLLMQEQLSKNRIIVEMDI 412 Query: 163 KTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTEQIL 221 K + + R + + + IILRA+ Y + ++I Sbjct: 413 KHNICATITSTTAESKSRCA---IVYKNNKLYLKHNSFIEDIGVCIILRAMGYESDQEIF 469 Query: 222 DLFFEKVI---------FEIRDNKLQMELVPERLRGE--------TASFDIE-----ANG 259 + +E+ + ++ L G+ F N Sbjct: 470 QMIGSHKNYVNGILLSLYELYNENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNE 529 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 K +E+G +R + + K ++ + + I + + Sbjct: 530 KDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANNKNEIDDKDYYGNK 589 Query: 320 DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 L + I +TL ++ S L M P Sbjct: 590 RLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQSNYNSKLRSTGNNMNDNYPDVFR 649 Query: 380 AAESLF 385 Sbjct: 650 NLPKDI 655 >UniRef50_B5Y994 DNA-directed RNA polymerase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y994_COPPD Length = 1293 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 296/1096 (27%), Positives = 446/1096 (40%), Gaps = 201/1096 (18%) Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY-IAGKVVAKDYIDESTGELICA 312 ++ +G V V ++ R + K V + +Y I KV + + G +I Sbjct: 356 VLDKDGSVVVRANSPMSTRDVETFFKSHVIPMVRSGKYDIKVKVPVRGQMKAYEGWVIAD 415 Query: 313 A----NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR 368 + L +++ T + + + SA VE+ + Sbjct: 416 DVEVDGESVEGRALDPELAKSLRKVSDFVTLQVPIKRFF-----------QGSAFVELEK 464 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 R GE + AE F L F R + VG + + L+ + + ++ Sbjct: 465 R-RTGETLSEREAERRFRQLLFDPKRNQIGRVGAYHIEHRYGIKVEDS---LTDEMLAEL 520 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-SLGDLDTL 487 L+ G DDIDHL NRR+R++GE+ F R+ + ++ + + L Sbjct: 521 GGILLAYCIGSTMPDDIDHLSNRRVRAIGELYYEVFANAFERLVKTARDEMINQQKEPEL 580 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 ++ ++ V F S++ Q ++ NPL+EITHKRR++A+G GGL+RE A EV Sbjct: 581 KLHRVLAQNILTQYVWRFVNPSEVHQLLEYTNPLTEITHKRRVTAMGRGGLSREHASIEV 640 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 RDVH THYGR+CPIETPEG NIGLI SL+ YA+ NE+GFL TPYR+V Sbjct: 641 RDVHHTHYGRLCPIETPEGQNIGLILSLATYAKLNEHGFLITPYRRV------------- 687 Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 N + + E + + + Sbjct: 688 -----------VNGEVTD---------------EIVWMDALEEEKEYIVPADT------- 714 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYV 727 L N + A + Q V + + S + +V ++ Sbjct: 715 --PLNGRKINVDRVLARHRSQWVAVDKDQI---------TLMDVSVTQPFSISASLVPFL 763 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 ++ + + M + + P V+ G + Sbjct: 764 ESDDAIRALMGSNMQRQAVPLIN---------------AESPIVATG---------MEKH 799 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 + + + N Q+ + + +++ + D G Sbjct: 800 VVESLDYVIKAN------------------------QDGTVSYVDGKQVKIKAED---GY 832 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 E+ + + V G +V GD+L +T +L +L A Sbjct: 833 EKTYQLKVFDRTNQDTVVHFRPKVKQGQKVKKGDVLAEAITS-DNGELALGRNVLVAFMP 891 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQ--------LKQAKKD 959 + + +D+ L V V VE + + E +Q K+ Sbjct: 892 WEGYNYEDAILISKRLVKDDVFTSVHIREYMVEVAELSRGRSEEITYDLPDSVSEQEKRY 951 Query: 960 LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD 1019 L E I+ G + +LV E+ DK + L ++ + + L Sbjct: 952 LDPETGIVMVGTEVKPGDILVGKVTPKEEEDKSIETKLLSAIFGEKLDKVKDTSLRVPPA 1011 Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 E + ++ G +K VKV++A KR+IQPGDKM+GRHGNKGV+S++ Sbjct: 1012 EGGIVVDTQILRN---------SETGKIKAVKVFVAQKRKIQPGDKMSGRHGNKGVVSRV 1062 Query: 1080 NPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVA 1139 P EDMP+ +G PVDIVLNPLGVPSRMNIGQ+LE HLG+AAK +G K+ + V Sbjct: 1063 LPEEDMPFLPDGRPVDIVLNPLGVPSRMNIGQLLELHLGLAAKVLGFKVEVPIFSNFGVE 1122 Query: 1140 KLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELL 1199 ++E ++ A D Sbjct: 1123 GVKELLREAGLPENGKVVLRDG-------------------------------------- 1144 Query: 1200 KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1259 +G+ L +TVGYMYM+KL H+V+DK HARSTG Y+LVTQQPL Sbjct: 1145 ------RTGEEFL----------SDITVGYMYMMKLIHMVEDKWHARSTGDYALVTQQPL 1188 Query: 1260 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGM 1319 GG+A FGGQR GEMEVWALEAYGA+Y LQEMLTVKSDDV GR K Y + P + Sbjct: 1189 GGRAHFGGQRLGEMEVWALEAYGASYVLQEMLTVKSDDVEGRKKAYIALTRNQPLEPPQL 1248 Query: 1320 PESFNVLLKEIRSLGI 1335 PESF VL E+++LG Sbjct: 1249 PESFKVLELELKALGF 1264 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 80/363 (22%), Positives = 145/363 (39%), Gaps = 53/363 (14%) Query: 6 TEKKRIRKDFGKRPQV----LDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 T +K+I + GK + + P L + +S+ F+ + GL F + FPI+ Sbjct: 2 TARKKIWEVSGKVSKPTLSEVPYPDFLEAKKNSWNWFVTE------GLRELFNTYFPIED 55 Query: 62 YSGNSELQYVSYRL--------GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 G + + Y G P+ ++ TY+ L VK+R+ E Sbjct: 56 AKGRWRIDILDYYFENDVADETGNPINTPEDAIREHATYAKRLIVKVRVHNSE------- 108 Query: 114 VKDIKEQEVYMG-EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 +I E+E +G IP MTD+G F++NG+ RV ++QL RSPG++ ++D L Sbjct: 109 TGEIVEKEHVLGKRIPWMTDSGDFIVNGSRRVTLNQLVRSPGIYLEAD--------GSLR 160 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRALNYTTEQI----------- 220 +IP RG+W+D E+D K+ L + +DRR +KL LRAL Y ++ Sbjct: 161 RISLIPQRGTWIDIEYDGKNPLSIVLDRRSKKLNLATYLRALGYMSDDEIRTRLKDSALK 220 Query: 221 -LDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEK 279 ++ F F+ + + LV + + + ++ Sbjct: 221 WIEFFLNDAGFDNKKLFVSQNLVSYFNYLRSYYSSTAQTVSEFRNVLENL------DVDD 274 Query: 280 DDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN 339 ++ +E +A+ Y + +G I + + L L ++ Sbjct: 275 QLLERLEEYNVESVLDEIAESYASQYSGLEILNIFKTIVDENLKLLIDKTIDGDTSINIF 334 Query: 340 DLD 342 + Sbjct: 335 TVS 337 >UniRef50_D2XA39 DNA-directed RNA polymerase subunit beta n=1 Tax=Marseillevirus RepID=D2XA39_9VIRU Length = 1277 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 215/1416 (15%), Positives = 439/1416 (31%), Gaps = 235/1416 (16%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 + Q+ ++ +F+++ I G E+ Sbjct: 9 WELFEFWFSQTGPAHHQIQAYNEFVQELLPN-------------IIREKGRVEID----- 50 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 + E P K Q V P+ Sbjct: 51 --------------------KEEETVEDDEEETVTPAAKKKRSWFQVVEFTN-PVFGRVT 89 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 + + I R G+ + + + I E+ + Sbjct: 90 HHEFDDRIKDIFPSDARRRGIPYSAP-----------FYCDIFVTTADGETAEYKQQTIA 138 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 +P + N T + ++ ++ + E + F Sbjct: 139 E--------IPVMVRSCLCNLT------------RYNLQGDECRQYG--EDPMDKGGYFI 176 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 I+ V + R R +K K + + ++ A +T + Sbjct: 177 IDR-EIVVISSERGAFGRVYTYADKQANKKMPKYEVHSEIRISATSNTRTTTVYVGLENG 235 Query: 315 M---------ELSLDLLAKLSQSGHKRIETLF-------------TNDLDHGPYISETLR 352 + E + L L ++ L L+H + + R Sbjct: 236 VAVLYAQHLSEKGIPLCVVLEAMNFSYLDILKFTKGLTKEQRGFLIPSLEHARAMFPSSR 295 Query: 353 VDPTNDRLSALVEIYRMMRPG--EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + + + ALV + G E P +A L + Sbjct: 296 KNRVSSMVKALVAMGYKKPKGVEELPPSDAEVKLAVWAATLSKELCEKLFPCYREADK-- 353 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + ++ + + ++ G + +D DH N+R+ V + N F + Sbjct: 354 ----------KVWFMCYMLARALKVKTGDRQPEDRDHYTNKRVDCVDSLLNNLFYSMWNQ 403 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS------------QFMDQN 518 + +K+ G T P I +K I+ ++ + S Q ++ Sbjct: 404 TTKFIKDS-CKGKERTADPLKPIRSKSITKKIRTAMSTGNWSSFNTKSKKQGTSQNYERY 462 Query: 519 NPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN-IGLINSLSV 577 N ++ ++ R++ A + E + R VH + YG +CP +TPE + GL L++ Sbjct: 463 NIVASCSNLRKVHA----AIGTEGNMTKPRRVHESSYGFICPPDTPESKDKTGLSKVLAL 518 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL----DEEGHFVEDL 633 A + +E + + + Y S + G N + D + +L Sbjct: 519 SATMSLGCTVEECFE------ILSALEYFS-QDFGLETFVFLNGVIMGSTDSPKELIGEL 571 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 + G+ + V + +V LI L + + G + + Sbjct: 572 SVLKRAGDF-FWDCCFVFDEKHNEVRVNCDAGRLIRPLMVVEGGKLRFGPEHYERLMKGT 630 Query: 694 RADKPLVGTGMERAVAVD---------------------------SGVTAVAKRGGVVQY 726 + +G G+ + + + ++ Y Sbjct: 631 ITWQEFIGLGIVEILDAEQQEHSLICPSAEQLGQSESKEWTHCEIHPLLVYGVCASIIPY 690 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 + M + + Q P S Sbjct: 691 SANNPSPRLSYFASMAKSSVAVPRLDFGIAPFDQHVLHYPQKPLTSTKA----------S 740 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 + + + QN+ VA ++G+ ED+I+ + Q + H+Q + K Sbjct: 741 RLLGMNKSPICQNLVVAVCSYDGFGQEDAIVACKAFTQRGGMVSDHVQNYVAIIDHEKEQ 800 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 + ++ G +V K+ P+ ++ P + I Sbjct: 801 ISPSRCSDVEFSSSCQRFWCKN----CGKKV--------KLCPECGSEYVPSFSGHKGIV 848 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQI 966 K D + + VF ++ ++ + +K++ + + Sbjct: 849 CRKKEDER----------RAFIDRQTVFWN----RNPINRIKRKVVVDGEEKEVDNQKKF 894 Query: 967 LEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFE 1026 L + L E +LD L + +E+G E+ + + K E Sbjct: 895 LGKKKW----DCLCEEVEELPRLDHLDPEGVVEVGEVVEDGDILIAVAGVSGAKRKDESI 950 Query: 1027 KKLEAKRRKITQGDDLA-PGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 + KR ++T P ++V +A R + GDK H KGV S +DM Sbjct: 951 YFGKDKRGRVTSVSYFQNPNGYLCIRVAVASTRIPETGDKATSFHSQKGVFSLFVEEQDM 1010 Query: 1086 PYDENG---TPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 P+ + T D ++NPL PSRM IGQ E++ G + A ++ + Sbjct: 1011 PFTSDAFSATHPDFLINPLAFPSRMTIGQPKESNTGK--------MTASAYRELPDSHRF 1062 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR--KGMPIATPVFDGAKEAEIKELLK 1200 E+ L A ++++V + + +E+ + + G F +++ LK Sbjct: 1063 EYENLYRTLSARIQKEVPEAEEAAKELEKRNPKTKGYSGSYTDCTPFTS-NYQVVEDELK 1121 Query: 1201 LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260 G+ DGRTG++ E + VG + +L H+V DK+HAR+TG +T+QP Sbjct: 1122 RRGYAPGGKEFFIDGRTGKKMEVSLFVGLVPYNRLKHMVIDKIHARATGKIQSLTRQPTE 1181 Query: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK--------------MYK 1306 G+++ GG + G ME +L GA + L++ L + D + Sbjct: 1182 GRSRNGGLKTGIMERDSLVGNGAVFCLRDRLFLSCDKFEVWVCESCGLIAVESKEKKYCR 1241 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 ++ ++ +P + + +E+ ++GI + + Sbjct: 1242 ACHGKSNVVKLAVPYATKLSFQELMAMGITPRILVK 1277 >UniRef50_D1J787 DNA-directed RNA polymerase n=2 Tax=Phaeophyceae RepID=D1J787_ECTSI Length = 1139 Score = 540 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 305/902 (33%), Positives = 449/902 (49%), Gaps = 65/902 (7%) Query: 213 LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR 272 ++ +I+ + R ++ +P L E +F +V + + R Sbjct: 88 MSLKKNEIIKKGIVQPEDFSRKERVFFGEIP--LLTEKGTFIFNGCERVIISQIIRSPGV 145 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 + +Q+ K+ E I+ + E + + + + + L + Sbjct: 146 YYKQIIKEKKIFYEGT--IISKYGSWLTFELEYN-LIWVKFDKQYKIPINWFLVGLSLEE 202 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP--------PTREAAESL 384 E T + S + D++++ E +++ T + L Sbjct: 203 SEVYQTVQNFNFLIKSLSAIRLAIFDKMTSKSEKNKVVDKENHEAYNRNILLTVFRVQEL 262 Query: 385 FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDD 444 + YDL VGR+K N+ L L+ DI+ V+ KLI I ++DD Sbjct: 263 INQRLLDKGVYDLGEVGRIKLNKKLDIGLPLSRRTLTSLDILKVIDKLIHISFHNEKLDD 322 Query: 445 IDHLGNRRIRSVGEMAENQFRVGLVRVERAV----------------------------- 475 ID+L NRR+RSVGE+ + Q RV L R+++ + Sbjct: 323 IDNLENRRVRSVGELLQLQVRVALGRIKKKINTDEKLTAEMFRIKKNKKRAGMKNSTPKK 382 Query: 476 -----KERL---SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 K +L +TLMP +++N+K +++ ++EFFG S LSQ+ D+ N L+++THK Sbjct: 383 NKSTKKNQLGRKKKPQKETLMPNELLNSKVLTSVIREFFGLSPLSQYFDEVNALAQLTHK 442 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RRIS+LGPGGL E F RD+HPT YGR+CPIETPEG GLI SL+ +A+ N YGF+ Sbjct: 443 RRISSLGPGGLNSEHVSFAARDIHPTQYGRLCPIETPEGQKAGLIASLATHARINNYGFI 502 Query: 588 ETPYRKVTDGVVTDEI--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF 645 TP+ +V G V E+ YL+A +E Y +A + L + F +V RS E Sbjct: 503 TTPFFRVYKGKVLYELGPVYLTAEQEATYNVASGDVLLTRDNFFRTKIVPVRSFNEFITV 562 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 V+++ VS Q+++VGASLIPFLEHDDANRALMG+NMQRQAVP L KP++GTG+E Sbjct: 563 DAINVNFLAVSPIQILAVGASLIPFLEHDDANRALMGSNMQRQAVPLLYPKKPIIGTGIE 622 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 +A DS V + G++ V + RI I N +Y L KY RSNQ T I Sbjct: 623 HQIAADSQVVLINLLDGIIDSVCSDRITIIDN-----KYLGSSKMYFLDKYRRSNQETII 677 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 NQ P + GE VE G ++ADGP T+ GELALGQN+ VA+MPW+GYNFED+ILVS+R+VQ+ Sbjct: 678 NQKPLIWNGEIVEPGQIIADGPGTEGGELALGQNLTVAYMPWDGYNFEDAILVSDRLVQD 737 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 D FT+IHI++ D EEIT IPN+ E + LD +GI+ G V GGDILVG Sbjct: 738 DLFTSIHIEKYELQLMDESDTIEEITTSIPNIEEEEIINLDMNGIIKKGTFVNGGDILVG 797 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE-KDKR 944 K+TP E PE KLLRAIF ++ + +DSSLRVPNGVSG VI++Q +R+ + Sbjct: 798 KITPILEEDELPESKLLRAIFNIESPEPEDSSLRVPNGVSGRVIEIQTASREKGDNLGSG 857 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 E + + Q KK + G I ++ + D D L L Sbjct: 858 IYEWVCISIAQIKKIRIGDKLSGRHGNKGVISKIIPTDDMPF-LPDGTIVDVILN-PLGV 915 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + N + ++ + D++ + + A+K+ + D Sbjct: 916 PSRMNVGQIFECLLGFAGDYLNRRFKVIPF-----DEMYKPNASRILINKALKKAAKETD 970 Query: 1065 KM 1066 K Sbjct: 971 KC 972 >UniRef50_Q0ZJ28 DNA-directed RNA polymerase subunit beta n=114 Tax=Streptophyta RepID=RPOB_VITVI Length = 1070 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 265/883 (30%), Positives = 437/883 (49%), Gaps = 27/883 (3%) Query: 167 SGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE 226 + LY I ++F+ + V + + L + + Sbjct: 31 LTEELYKFPKIEDTDQEIEFQLFVETYQLVEPLIKERDAVYESLTYS--SELYVSAGLIW 88 Query: 227 KVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR-QLEKDDVKLI 285 K ++++ + + +P L + + ++ + + + + R +L+ + + + Sbjct: 89 KTSRDMQEQTIFIGNIP--LMNSLGTSIVNGLYRIVINQILQSPGIYYRSELDHNGISVY 146 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETL-FTNDLDHG 344 + G + + + + + + + +L S G E L + Sbjct: 147 TGTIVSDWGGRLELEI--DRKARIWARVSRKQKISILVLSSAMGSNLREILENVCYPEIF 204 Query: 345 PYISETLRVDPTNDRLSALVEIYRMMRP--GEPPTREAAESLFENLFFSEDRYDLSAVGR 402 + SA++E Y+ G+P E+ + FF + R +L +GR Sbjct: 205 LSFLNDKEKKKIGSKESAILEFYQQFACVGGDPVFSESLCKELQKKFF-QQRCELGRIGR 263 Query: 403 MKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN 462 NR L + + + L DI+ LI ++ G G +DD++HL N+RIRSV ++ ++ Sbjct: 264 RNINRRLNLDIPQNNTFLLPQDILAAADHLIGMKFGMGILDDMNHLKNKRIRSVADLLQD 323 Query: 463 QFRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP 520 QF + L+R+E V+ + L PQ+++ + P++ + FFG LSQ +D+ NP Sbjct: 324 QFGLALIRLENVVRGTICGAIRHKLIPTPQNLVTSTPVTTTYESFFGLHPLSQVLDRTNP 383 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 L++I H R+ S LGPGGLT A F +RD+HP+HYGR+CPI+T EG N+GLI SL+++A+ Sbjct: 384 LTQIVHGRKSSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHAR 443 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG 640 +G LE+P+ ++++ + YLS + Y++A NS +G E +V R + Sbjct: 444 IGHWGSLESPFYEISERSKKVRMLYLSPSRDEYYMVAAGNSLALNQGIQEEQVVPARYRQ 503 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 E + +QV + Q S+GASLIPF+EH+DANRALM +NMQRQAVP R++K +V Sbjct: 504 EFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIV 563 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 GTG+ER A+DSGV +A+ G + Y D +I + G L Y RSN Sbjct: 564 GTGLERQAALDSGVPVIAEHEGKIVYTDTDKI--------ILSGNGDTLSIPLVMYQRSN 615 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 +NTC++Q V G+ +++G +LADG +T GELALG+N+ VA+MPW GYN ED++L+SE Sbjct: 616 KNTCMHQKAQVRRGKCIKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISE 675 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 R+V D +T+ HI++ + T GPE IT IP++ L LD++GIV +G+ V G Sbjct: 676 RLVYGDIYTSFHIRKYEIQTHVTSQGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETG 735 Query: 881 DILVGKVTPK--GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 DILVGK+TP+ E+ PE++LLRAI G + S K++ L++P G G VIDV+ + G Sbjct: 736 DILVGKLTPQMAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKG 795 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 E + + Q ++ + G I +L + D P D Sbjct: 796 GSSYNP--ETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPY-LQDGRPVDMVF 852 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 L + N + ++ + Sbjct: 853 N-PLGVPSRMNVGQIFECSLGLAGGLLDRHYRIAPFDEKYEQE 894 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 111/252 (44%), Gaps = 21/252 (8%) Query: 16 GKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSY 73 G + +P IQ + F +FI+Q GL I+ E Q +Y Sbjct: 4 GGNEGMSTIPGFNQIQFEGFCRFIDQ------GLTEELYKFPKIEDTDQEIEFQLFVETY 57 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 +L EP+ ++ +TYS+ L V L+ T +D++EQ +++G IPLM Sbjct: 58 QLVEPLIKERDAVYESLTYSSELYVSAGLIW-------KTSRDMQEQTIFIGNIPLMNSL 110 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 GT ++NG R++++Q+ +SPG+++ S+ +G +Y I+ G L+ E D K Sbjct: 111 GTSIVNGLYRIVINQILQSPGIYYRSELD---HNGISVYTGTIVSDWGGRLELEIDRKAR 167 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV---IFEIRDNKLQMELVPERLRGET 250 ++ R+ R++K+ ++ A+ +IL+ F K ++ + Sbjct: 168 IWARVSRKQKISILVLSSAMGSNLREILENVCYPEIFLSFLNDKEKKKIGSKESAILEFY 227 Query: 251 ASFDIEANGKVY 262 F V+ Sbjct: 228 QQFACVGGDPVF 239 >UniRef50_Q2EEX2 DNA-directed RNA polymerase subunit beta n=1 Tax=Helicosporidium sp. ex Simulium jonesi RepID=RPOB_HELSJ Length = 1247 Score = 537 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 287/1268 (22%), Positives = 496/1268 (39%), Gaps = 116/1268 (9%) Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 + G F +N + + R FF + I +D F K Sbjct: 17 NQGRFDLNKLKNFNLLINQRENWRFF---LINGLKLAFKEFEHFKIKNNNFIIDIVFQEK 73 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETA 251 F +I + + + +K + K + L Sbjct: 74 FLFFKQIRQAYLKKVETFGYNIFIPIIITQKILNKKNNLNLTFFKWLDLGILPSL-SPKT 132 Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV----PVEYIAGKVVAKDYIDESTG 307 SF I+ + + ++ L + ++ IA + Sbjct: 133 SFYIDGISRAVSTQKKKSPGLMFDFDLTKKSSLEKREGEAFLKIIAPRGSWFKISYSEDH 192 Query: 308 ELICAANME-LSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 + + + L G + + + + D TN + A +I Sbjct: 193 IIFIEIRNIAYKIPIFTFLCALGFSLESIFQFFNYNINNFKLIPNKYDNTNALIKARNDI 252 Query: 367 ---YRMMRPGEPPTREAAES------LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 Y + P T++ E F + ++ + R+ + S Sbjct: 253 FILYSDLLPLLNKTKKNFEIKYIINHYFFSYIWNSNTRYCGEATRLHLYNKVGSPLSLNS 312 Query: 418 GILSKDDIIDVMKKLI-DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 L + D I + K I + N + ++ D+L N R R+ G+ Q R GL E + Sbjct: 313 LFLEEIDFIYITKIFIYRLINNNFKDENNDNLKNMRFRNGGDYIYLQTRQGLFDFESFL- 371 Query: 477 ERLSLGDLDTLMPQDMINAK----------------------------PISAAVKEFFGS 508 ++L +++ I + + K FF S Sbjct: 372 -NINLHNIENNSFFCNITTNKKKEDIYSIKKKKNIKNFNLSKISFLKHILLKSWKSFFLS 430 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 LSQF + NPLS ITH RR ++LGPG L + A EVR ++P++ GRVCPIETPEG N Sbjct: 431 GTLSQFAENLNPLSYITHARRFTSLGPGSLKKAEASIEVRSINPSYNGRVCPIETPEGFN 490 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD---EIHYLSAIEEGNYVIAQANSNLDE 625 GL++S S+Y+ G L P+ + + + + EE N I + ++ Sbjct: 491 AGLVHSFSLYSFKGVNGELLLPFYFIYKNIKQSYYLPPIFFNIEEESNQSIITGDLIHEK 550 Query: 626 EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANM 685 F+ ++ R+ ++ + +S ++S+ SLIPFLEH+DANRALMG+NM Sbjct: 551 WNDFLNKKLSLRNNFHLDKNDISKISFQSLSPYHMISLATSLIPFLEHNDANRALMGSNM 610 Query: 686 QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGE 745 QRQ VP L A +V TG++ D +++ G + + D + Sbjct: 611 QRQTVPVLGAHNFIVRTGLDTKFFSDISSIPISQINGF-NFESNNNYCYFYKIDNL---- 665 Query: 746 AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 ++ + ++N N+ ++GD L + + G+LALG N+ +A++ Sbjct: 666 ITLNNISYNYIKKTNHNSLYINESIKKKNPWHQQGDFLINNSVIENGKLALGPNLLLAYL 725 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR---DTKLGPEEITADIPNVGE--- 859 PW+GYN+ED+++++ER V + T++HI L +E ++P E Sbjct: 726 PWHGYNYEDAVIINERCVSQKILTSLHIITLTNSLELAYREINKKKEFFYEVPVKLEILF 785 Query: 860 ----AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 L G K IF + Sbjct: 786 SFFAPFYYNLKYYKNQEFSQFEKKNPSYYTNNINIGTF-----LKKGDCIFSKCRIRFSF 840 Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 S ++ + F K+ + + ++ + ++ L+ F Sbjct: 841 SRELRLQYKELFILLREAFPTFEDFKNFANIFAYDKYKQKLDRKKQKKNTRLKTDNFIFN 900 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF---EKKLEAK 1032 + + + + L + ++ + + ++ + + Sbjct: 901 KNSTLFKKHKLKALINYYNIEDSTIYAQKNQEGLIISKHLKKVPMTYTSITPFDLEEFLS 960 Query: 1033 RRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGT 1092 ++ + + K + + + R IQ GDK AGRHGNKG+ISKI PI +MP +GT Sbjct: 961 TKESKKKEYYNLFFTKSINIEILQLRDIQLGDKCAGRHGNKGIISKICPINEMPLLPDGT 1020 Query: 1093 PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLG 1152 P+DI+LNPLG+PSRMN+GQI E+ LG+A + + + + G Sbjct: 1021 PIDIILNPLGIPSRMNVGQIFESLLGLAGFYLNETYTINIFDE--------------QFG 1066 Query: 1153 ADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRL 1212 + + LS ++ L +G+ + Sbjct: 1067 LEASRSFVLSKLYKASILSNKP-------------------------WLFLKKNAGKTNI 1101 Query: 1213 YDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGE 1272 DG TG+ F++P+T+GY +LKL H+V DK+H RS G YS +T QP GK+ GGQR GE Sbjct: 1102 IDGLTGKYFQQPITIGYSSILKLIHMVTDKLHGRSIGGYSTLTLQPTKGKSLLGGQRVGE 1161 Query: 1273 MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRS 1332 ME+WAL+ YGA++ LQE+ T+KSD V R + ++N ++ + E + + ++ L E+ S Sbjct: 1162 MELWALQGYGASWALQELYTLKSDLVEAR-QHFQNYINSFNI-ESNIYDRNDISLTELES 1219 Query: 1333 LGINIELE 1340 L I+ + Sbjct: 1220 LIISDTFK 1227 >UniRef50_B1L740 DNA-directed RNA polymerase n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L740_KORCO Length = 1121 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 204/1379 (14%), Positives = 391/1379 (28%), Gaps = 306/1379 (22%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 K+ + L +Q++SF +F+E+ G++ + Sbjct: 3 SKRSEVDFYPIVKAYFRERNLADVQIESFNRFLER------GIQEVVDA----------- 45 Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 + L E + VY+G Sbjct: 46 ---FKEIELVE------------------------------------NYKLILSRVYVGR 66 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 P + + +G+ + R + + Sbjct: 67 -PEIDEY-----DGSSLPAMPNEIRLRNADYIAPIELEIKV------------------- 101 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 + L R LP + + L + Sbjct: 102 -YAGGMELKTERVRIGHLPIMVKSKGCYLYGLDEKRLISKGEDP---------------- 144 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQ------LEKDDVKLIEVPVEYIAGKVVAKD 300 R F I + +V V + + I + V I + ++ + Sbjct: 145 RDPGGYFIINGSERVLVMRDDIAPNKVIVEQTVAENKPYSHVAQIVSARAGLRTRLYLEY 204 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 Y+ + T + + + + L G +R E + I + + Sbjct: 205 YMRDGT--IKASTGALRGIPVAMLLKALGLERDEDIVDAISSVDDEIRSEFLYSLDDVQR 262 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 A E +++ E + RY ++ N E I+ Sbjct: 263 RAEEEGAQIITREEALDYIGRRLVQAVPRADRIRYAKE---YLRNNFLPHIGVSEEDNIV 319 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER-- 478 + +++KL+ + GK E DD DH N+R+R G + + FR ++ R +KE+ Sbjct: 320 KAYFLAKMIEKLLKVVRGKLEPDDKDHFSNKRLRLSGTLMQEVFRDSFYQLVRKLKEKAD 379 Query: 479 --LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRR 529 LS G D + + + + K ++ + + SQ +++ N ++ + H RR Sbjct: 380 EQLSSGVYDLDIRRIIQSQKLVTQRIIRAVATGAWPGGDLGVSQNLERTNYIATLHHLRR 439 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 +++ P GL EVR H T GR+CP+ETPEG N+GL+ SL+++ +G Sbjct: 440 VNSPLPAGL----PLHEVRQTHGTSIGRLCPLETPEGTNVGLVRSLAIFCDV-TFGTDPE 494 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL----DEEGHFVEDLVTCRSKGESSLF 645 P ++ E G+ N L D+ V L R Sbjct: 495 PIIELVLDWGAKPAKEAKPREVGSLTPVYVNGRLVAFTDKPEELVSFLREKR------AE 548 Query: 646 SRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME 705 +V+++ + + + A+ R P + K + Sbjct: 549 LNPEVNFIY------------------NREEGAVFINADAGRMRRPLIPVSKLKEAMELL 590 Query: 706 RAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCI 765 V + GVV+ +DA V + ++++T Sbjct: 591 PKVDSGELSFTDLVKMGVVELLDADEEEYAVVAQSIE--------------EITDKHTHF 636 Query: 766 NQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 + P G + + +P+ +N ++ +V++ Sbjct: 637 DFAPYAMFG-------------------------VAASQIPYAEHNNIPRDIIGSNMVRQ 671 Query: 826 DRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVG 885 + R P V GAE+ Sbjct: 672 GLGEYLA----NWRLRFDSRAFLMFYPQRPIVETR-------------GAEI-------- 706 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 G + L+ A+ ++ D+ + + F E + A Sbjct: 707 ----TGYNYRPSGQNLVVALLPMDGYNMDDALVMSKGAIDRGAARAVFFRTYETEARRHA 762 Query: 946 LEIEEMQ------LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + K + K + Q L + G V K L Sbjct: 763 IIEGDKFENPVALKKVSGKKEEQYYQKLGEDGIVDPETYVEGGDVLIGKTSPPRFSPELT 822 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 +G + ++ + + G K+V+V + R Sbjct: 823 VGSGYPQ---------YTFERRDTSISMRAWERGVVTDVLLATKTGGEKLVRVNVRETR- 872 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 P + Sbjct: 873 ---------------------------------PPE--------------------LGDK 879 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 A G K + + E + ++ E++ +G Sbjct: 880 FATRHGQKGVLGMIYRHEDMPFTAQGIIPDIVLDPHTIPSRMTIGQLYEIIAGKVGALEG 939 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 + F ++ E L SG+ +YDGRTG + PV +G Y +L H+V Sbjct: 940 RFVDGTPFMSEPVEDLMEALVKLGFEYSGEEIMYDGRTGRMIKAPVFIGISYYQRLKHMV 999 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DK+HAR+ G L+T+QP+ G+A+ GG R GEME L ++GAA +++ +SD Sbjct: 1000 RDKIHARARGQMQLLTRQPVEGRARGGGLRLGEMEGEVLISHGAASVIRDRYIDQSDKTI 1059 Query: 1300 GRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + ++E+ S +++ L E Sbjct: 1060 IYVCKECGTIAFFNQKTNEFFCPRCQSSVEVKPLITSYASKLFIEELMSGHVDVRLSVE 1118 >UniRef50_Q7RER1 DNA-directed RNA polymerase n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RER1_PLAYO Length = 1470 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 208/1463 (14%), Positives = 430/1463 (29%), Gaps = 233/1463 (15%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI---------QSYSGNSELQYVSYRL 75 +L+ +D F FI + + + + + Sbjct: 87 KFLVQSHIDDFNSFINVYIKNMPETLPVIEFSPNLNKYSCLNYEKKPKERIKFYISDIII 146 Query: 76 GEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 PV C++ TY + V + + +I V G Sbjct: 147 KTPVIKNDNGNTRPNYPYLCKLACSTYEGEVLVVI---------NKQYKNEIVRTTVSTG 197 Query: 126 EIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDK 161 IP+M + G F+++G ++I + +++ Sbjct: 198 FIPIMVLSDLCNLKNLNKKELVQKGEDESILGGFFIVSGHLKIIRYVICPKYNAILLNEE 257 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 K H + + N+ I ++E++ ++ + + + L + + Sbjct: 258 NKVHINCLLSDNSVFINSLSYLNNYEYE-----YLSRFQGSFIRIAFNVLILCLSPIKKK 312 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 + K+ I++ + + DI V+ + + ++ Sbjct: 313 SYIYNKIKLGIKNENAIKY-IENYINSIFLKNDINEKE-VFDKYNLKYLGKYANTSRTIF 370 Query: 282 ----VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF 337 + + V+ + E IC +L +L+K ++L Sbjct: 371 RYYDGNNYKKGKNVVKYCVLPHLQSNSEKFETICLMFKQL---VLSKFKLINTVNKDSLE 427 Query: 338 TNDLDHGPYISETLRVDPTNDRLSALVEIYRM-MRPGEPPTREAAESLFENLFFSEDRYD 396 + + + + + + +Y + E + + ++ Sbjct: 428 YHSVTTCSGLLSNILKERILSCFYRMQMLYSRSLHRFLEKKYEGFKLNVKQIYLRYKEMI 487 Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 L + FN+ LL D ++ ++L + D N R+ + Sbjct: 488 LHELSEDHFNQILLNNT----------DKLENNEELTSENDNMISK--RDSTKNLRLMFM 535 Query: 457 GE---MAEN---QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQ 510 E + N R R E + + + IS+ + S Sbjct: 536 NEKEKLFTNVDGYLREIFSD-SRLFIENTRTFGVASFAISYLFKTGNISSDYIHYQQKSG 594 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 D+ N L +T+ R A+ G ++ R + +G +CP+ TP+G G Sbjct: 595 WVILADEINNLRLLTNFR---AIHRGSFFQDVKVLSPRKLLGESWGFICPVHTPDGSPCG 651 Query: 571 LINSLSVYAQTNE-------YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNL 623 L+N LS Y + ++ +K+ V DE + + E + +S Sbjct: 652 LLNHLSQYCCIHNVASNEPHKFNIKMYLKKIGINVNLDETSGIHTVYENQTIPIIVDSVP 711 Query: 624 ------DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST-----QQVVSVGASLIPFLE 672 ++ V L ++ +L S ++ + + +I + Sbjct: 712 ITYISENDFKRTVYKLKYAKNHNLYNLKSHFEIIAHLNEQSLMDSITIHTCTGRIIRPIL 771 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAV--AVDSGVTAVAKRGGVVQYVDAS 730 + + + V ++ + R + ++ V + Sbjct: 772 NLKMKCIEFISPGYQPYVSIAVNYDDILKNNLARKILKKKENMVNLNSINNTKNTKKMTL 831 Query: 731 RIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTD 790 + ++ + E + YN ++ R I M + ++ Sbjct: 832 KEQYHFYTNKKHNIEKEAENYNESEIVRKKNKNKILNMLENKKQYQFNEDEYISSSDYET 891 Query: 791 LGELALGQN---------------------------------------MRVAFMPWNGYN 811 E + + P++ +N Sbjct: 892 SSESDKYSDDNMSSTTYIDSDENLNIDIYEQIPQKFEYMELKQTSFLSFLASLTPFSDHN 951 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIV 871 + +++++ IQ L T IT P V Sbjct: 952 QSPRNIYQCQMLKQTMG----IQSLNMFYTFTNKIYRIITPQFPLVVTRDYEFYGVDNFP 1007 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 + AI D++D+ + + Sbjct: 1008 -------------------------SGTNAVVAILAYTGYDMEDALIINKASSDRGMFRT 1042 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 ++ + ++ K+ + + ++ ++ K Sbjct: 1043 HIYKTEVIDLYKKTNSPDFALGNNVRYTIN---------------SLPTKNNPREYKGRF 1087 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVK 1051 L +D + E + ++ + +E K ++ Sbjct: 1088 LNKDGLPCINQKILENNPLYSYINKKNELTTYEVFKTHGDYYVDCVSNS---QSNNQVAI 1144 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQ 1111 + L R GDK A RHG KGV+S++ P EDMP+ E+G D++ NP G+PSRM IG Sbjct: 1145 IRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPFSESGIVPDVIFNPHGIPSRMTIGM 1204 Query: 1112 ILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMR 1171 ++E+ G AA G +I+A ++ K + G + ++ + +E Sbjct: 1205 LIESICGKAASIYGKRIDATPFRKYTKQKSFN---NPWIDGCGAKGFLNKQDENADEKKT 1261 Query: 1172 LAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231 ++ + +D K +LL G LY G G + + G +Y Sbjct: 1262 TIKSSTENSDTTEISYDE-KIDFFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFFGVIY 1320 Query: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291 +L H+ DK R TG +T QPL GK + GG R GEME L ++G ++ + E Sbjct: 1321 YQRLRHMAYDKAQVRRTGPVCHLTHQPLKGKKKHGGIRLGEMERDGLISHGCSFIINERF 1380 Query: 1292 TVKSDD----VNGRTK----------------------------MYKNIVDGNHQMEPGM 1319 + SD V + + K+ + Sbjct: 1381 LMNSDGHECFVCPKCGLILSPILQYNCSGKLMKGRSIGGNSKMAVCKSCNVSCKI--VYV 1438 Query: 1320 PESFNVLLKEIRSLGINIELEDE 1342 P LL E+ L I I L + Sbjct: 1439 PYVLRYLLNELVCLNITIRLNIQ 1461 >UniRef50_Q3LW27 DNA-directed RNA polymerase n=1 Tax=Bigelowiella natans RepID=Q3LW27_BIGNA Length = 1159 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 203/1378 (14%), Positives = 416/1378 (30%), Gaps = 274/1378 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 + ++ Q+ SF FI ++ + I N +Q Sbjct: 8 RVLQLLTTFFRGNSIIKQQIISFNDFIRKESQH-------------IIDKIPNLVIQI-- 52 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 +Y ++ + ++ ++ + IK +E+Y + + Sbjct: 53 ------------------SYKNSNKI-VNRILLLKQLYTEKPRIIKTRELY-----NLVE 88 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 + E I R + + S I + L + K Sbjct: 89 PSY---DEGELNISPNKSRLRNITYSSKVRIQVF-------DEITDKHDANLKKKVVNKS 138 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 F+ I K P I + L E Sbjct: 139 KKFIYI---GKFPCMIKSDTCYLNNFSEISLARNDECPF----------------DEGGY 179 Query: 253 FDIEANGKVYVEKGRRITARH--IRQLEKDDVKLIEVPVEYIA-----GKVVAKDYIDES 305 F I N KV V + R + + ++ +++ Y + G +V + + Sbjct: 180 FIINGNEKVLVAQERLVKNKVYIFSKIFDKKTRVMAQCRSYDSSLYNQGYMVYLKLVTDK 239 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVE 365 + + + + + L + + L + I ++ + +N + ++ Sbjct: 240 SNNPNQCSEITVKIASLR----AEIPLVILLKFLGFKNDKEIINSIFKNNSNSKKLNMLY 295 Query: 366 IYRMMRPGEPPTREAAESLFENLFF---SEDRYDLSAVGRMKFNRSLLREEIE--GSGIL 420 + + T A + F + + D R ++ LL S Sbjct: 296 N-SFLGVTKVQTISHALRYIVDRSFSKSNNKKLDPEKTAREIIDKKLLPHMGTSINSRFR 354 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL- 479 I + +LI+ N + DD D N+R+ G + + F + R + VK +L Sbjct: 355 KGLFICYMAHRLINTLNEIEQPDDKDSYKNKRVDISGHLFSSLFNNLIKRSIKDVKNQLL 414 Query: 480 -SLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITH 526 + D +++ ++ ++ + + SQ +++ + LS I+H Sbjct: 415 KKVKKSDATELEELFSSNILTNGFRYSLATGNWIIDGMLDYKTGVSQVLNRMSYLSMISH 474 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 R+++ T ++R VH +++G VCP+ETPEG G++ + + A Sbjct: 475 LSRLNS----SYTSNGKILDIRRVHTSYWGIVCPVETPEGQTCGIVKNFAFLAHVTNSHH 530 Query: 587 LETPYRKVTDGVVTDEIHYLSAI-------EEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 ++ + ++ I + +V N E ++ L+T R Sbjct: 531 IQKNIIQFLKKIMIKNSFTKPMIKTKKDKPDISIFVNGSWIGNTFEYFSLMKYLITLRR- 589 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 E F V + S + L + + ++++ A Sbjct: 590 QEIIPFDVSIVFNEKNKRIFIWSDPGRIKRPLFVLKNSNSFFNHSIEKIA---------- 639 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + + + + +V+Y+D I + L Y + Sbjct: 640 ------KKIKDNFHRWYFYIKNSIVEYLDTEEIE--------------NIVIKLNYYNNT 679 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 Q + + S+ LG A + +P++ +N Sbjct: 680 ELIVDQTQ-------IYKKMINFSEIHASSILGVSA-------SQVPFSQHNQSPRNTYQ 725 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 + ++ I+ R + P V L Sbjct: 726 SSMGKQAIG--INYSNF--QLRYDTQINILESNQRPLVFTIQKLCL-------------- 767 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 ++ + AI + +DS + + V + ++ Sbjct: 768 -----------RGQEMPSGINTIMAILSYSGFNQEDSLIINHSSVERGLFRTIIYKTFAE 816 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 ++ I E + S L L+ +I ++ V K KL Sbjct: 817 RENTNVNGIIEKIELE---SKSSNLFGLDIDGTRKIETLVNGDDVLISKTIKLT------ 867 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 G D + L + + L G KI+KV + R Sbjct: 868 -GKGDTKVNTIHSDLKLPLNSQG-----------VVDSIMYSLDEGGYKIIKVRIRSIRE 915 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 GDK + HG KG+I +P D+++NP +PSRM IG ++E + Sbjct: 916 PVIGDKFSSLHGQKGIIGYSYRQSLLPTTATSVTPDLIMNPHAIPSRMTIGHMIEMLMSK 975 Query: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKG 1179 + G +A + + K+ + + + + + Sbjct: 976 VSSHSGKLGDATAFSEGNIGKIIGHLSKFGIHHFGLEKMI-------------------- 1015 Query: 1180 MPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLV 1239 G+ ++ + VG +Y +L H+V Sbjct: 1016 ----------------------SGFN------------GDILQKSILVGPIYYQRLKHMV 1041 Query: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299 DK +RS G Y ++T+QP+ GK + GG RFGEME + ++G++ L+E L +SD Sbjct: 1042 VDKFFSRSRGPYEILTRQPVEGKTREGGLRFGEMERDCVLSHGSSLFLKERLMDESDKFR 1101 Query: 1300 GRTK---------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + I + +P + +L +E+ ++ I L + Sbjct: 1102 VHICEKSGLFCPANLKTQTFWSTIYHSKSICQIFIPYACKLLFQELIAMCIAPRLVVK 1159 >UniRef50_P28365 DNA-directed RNA polymerase I subunit RPA2 n=2 Tax=Intramacronucleata RepID=RPA2_EUPOC Length = 1166 Score = 525 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 179/1321 (13%), Positives = 368/1321 (27%), Gaps = 293/1321 (22%) Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 +F + + + H P + ++ + K+ + FE Sbjct: 25 DSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLT---------LWYDSFELGQPSL 75 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP---------- 243 + D P+ R + YT +F + + + K+++ +P Sbjct: 76 GEIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIPTMGRKKFCNL 135 Query: 244 ------------ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 E + F + N KV I ++ + +Y Sbjct: 136 KGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTDY 195 Query: 292 IAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 +D T L ++ +SL L+ + + I L I E + Sbjct: 196 GVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYERI 255 Query: 352 RVDP-----TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 +DR+ A++ + + + + +A + + + S + Sbjct: 256 VKGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSETSDIDAGDLF 315 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 S S D +I ++ KL + E+D++D + + + G + Sbjct: 316 LSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQILSE 375 Query: 467 GLVRVER-----AVKERLSLGDLDTLMPQDMINA-------KPISAAVKEFFGSSQL--- 511 L + + L + D + +D++ I ++ F + L Sbjct: 376 KLFDCLHINLRARLNKELKRHNFDPMKFRDVLTNQKINCGIGLIGKRMENFLATGNLISR 435 Query: 512 -----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 D+ N + ++H R ++ G E+ VR + P +G +CP Sbjct: 436 TNLDLMQTSGFCIIGDKLNNIRFLSHFR---SIHRGQYFAEQKTTSVRKLLPESWGFICP 492 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAI----EEGNYVI 616 + TP+G GL+N +S+ + K + + ++ +S+ Y Sbjct: 493 VHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRNILGELGMNSISSDLCLNYHTGYYP 552 Query: 617 AQANSNLDEE------GHFVEDLVTCR---SKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 + FVE L + S+ + ++ ++ ++ S Sbjct: 553 VIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAFIPFSG---------- 602 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYV 727 + + + + R P ++ + Sbjct: 603 --YSRNLQWPGIFLASTPARFTRPVKNLHY-----NCIEWISPLEQMNLSIA-------C 648 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 I + E+ P Sbjct: 649 TDEDITPETTHQELDPINILS--------------------------------------- 669 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 + + + YN + ++ ++ T H + R Sbjct: 670 ------------IVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYHNHQF----RTDNKIY 713 Query: 848 EEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFG 907 + P V D + + A+ Sbjct: 714 RLLFPHRPIVKTRTQVDFD-------------------------IEEYPSGTNAVVAVIS 748 Query: 908 EKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQIL 967 D++D+ + + V+ + ++ + + Sbjct: 749 YTGYDLEDAMIINKSSYERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKFLNN---- 804 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQN--QLEQLAEQYDELKHEF 1025 + KL+ + D ++G + + + ++ +L Sbjct: 805 -----------VSQKDKSKIKLENIDPDGLPKIGSQLTKGKPELCIFDTLKRGAKLSKFK 853 Query: 1026 EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 + + G+D + + R GDK + RHG KGV+S + P DM Sbjct: 854 DSEKARIETVRVCGNDDKNPDNLSIGYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQVDM 913 Query: 1086 PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFI 1145 P+ ENG D++ + H + +G I +M Sbjct: 914 PFTENGITPDLI---------------INPHAFPSRMTMGMLIQSM-------------- 944 Query: 1146 QRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP 1205 A G+ + + TF + D + L Sbjct: 945 --AAKSGSLRGEFKTVETFQRYD-------------------DNDIVGHFGKELLDKGFN 983 Query: 1206 TSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQF 1265 G +Y G G + + +G +Y +L H+V DK AR TG ++T QP+ G+ + Sbjct: 984 YHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDILTHQPVKGRKKG 1043 Query: 1266 GGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK---------------------- 1303 GG RFGEME +L A+GAAY L + L SD G Sbjct: 1044 GGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVNRAIMKTQTFI 1103 Query: 1304 ----------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + K ++ + +P L E+ S+GI ++ Sbjct: 1104 PPSLDESNKDTEDKEIHMNEKVICKVCKKNSNCKKVALPFVLRFLANELASMGIKLKFTV 1163 Query: 1342 E 1342 Sbjct: 1164 N 1164 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 85/255 (33%), Gaps = 61/255 (23%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS-- 63 T K RK+ K + +DSF + F + P +S S Sbjct: 3 TNAKFDRKEISKI-----YKNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCG 57 Query: 64 -GNSELQYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 L Y S+ LG+P EC+ R +TY+ PL + + Sbjct: 58 FKKLTLWYDSFELGQPSLGEIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDD------ 111 Query: 113 TVKDIKEQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQ 148 + + +V +G+IP M G F++NG E+VI Sbjct: 112 --EMVDNFKVKLGDIPTMGRKKFCNLKGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRML 169 Query: 149 LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF-------EFDPKDNLFVRIDRR 201 + + K GK + + R DF + ++ +R+ + Sbjct: 170 IVPKRNFPIAFKRSKFLERGKD-FTDYGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQ 228 Query: 202 RK---LPATIILRAL 213 ++ +P +IL+AL Sbjct: 229 KQEFLIPIILILKAL 243 >UniRef50_A2E3T5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2E3T5_TRIVA Length = 1142 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 168/1258 (13%), Positives = 342/1258 (27%), Gaps = 223/1258 (17%) Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEF 188 +M N + + RV + R ++ D K + + Y G+ L ++ Sbjct: 62 IMNANKEVIFSENPRVYI----RYKNIYVDRPKIRNQILTPQMCRLSDETYSGNVL-VDY 116 Query: 189 DPKDNLFVRIDRRR---KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 D + V+ + KLP + E Sbjct: 117 DFVNGSTVKSFNNQCIAKLPIMLQSNRCYLYNASD----------------ETFAKYDEC 160 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 F I +V + + R + + + K V K + + Sbjct: 161 RYDPGGYFVINGTERVVHVQEQSPYNRILIEHLANGNKTAVVNSSTSTHKTRVELIWKKD 220 Query: 306 TGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY------ISETLRVDPTNDR 359 T L + + + G + + G + + + + Sbjct: 221 TLALH-HNALSEDIPIFVLFRAMGVTSDQEVIQLVDPTGAVGHLLMSSLQEIIKLEISTQ 279 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+ I R ++ +A + + S V Sbjct: 280 DQAIQLIERRLKFLTITGIDATREERNMKGYKGREFLRSMV-------LPHIPSTLTDFR 332 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQ----FRVGLVRVERAV 475 + + + L+ +D D GN+R+ GE+ E F+ +++ V Sbjct: 333 RKSVFVGFMTRWLLLSAIDPRMIDGRDFFGNKRLELAGELLELLFEDLFKTFNASMQKTV 392 Query: 476 KERLSLGDL-DTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLS 522 ++ D ++++ I+ +K S SQ + + + L Sbjct: 393 SRTINKSKGIDPSNIAQAMHSETITHGLKYAISSGNWNITRFKMMRAGVSQLLGRMSYLQ 452 Query: 523 EITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN 582 ++ RIS+ + + R ++P+ +G +CP +TPEG GLI + ++ Sbjct: 453 FVSMVTRISSH----FEKTQKVAGARLLYPSQFGFICPSDTPEGAQCGLIKNFALTVHVT 508 Query: 583 EYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSN----LDEEGHFVEDLVTCRS 638 + P R+ + +E+ S E N I N +D+ R Sbjct: 509 VWADP-APARRTLLDLGVEELVVFSGEEISNNYIVMLNGEPIGIIDDPYSICRRFRQVRR 567 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 + F+ + V + + L + K Sbjct: 568 RHWVDKFAAIWIVEAK-KCINVSTEAGRVCRPLIIVE-------------------DHKS 607 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 + + V G+++YVD + + + + + I+ Sbjct: 608 KLTQELMDQVNRGEINFDYLLDNGIIEYVDVNE----MTDCLIAFNDKDIEE-------- 655 Query: 759 SNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILV 818 + C+N P + L + LG + +P +N Sbjct: 656 -ERKNCVNDPPLAK--GELRYFTHLEIHNAQMLG-------VCAGVVPCPHHNQSPRNTY 705 Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 + ++ L + R K P V + Sbjct: 706 QCAMGKQAIG----PTALNIMHRVDKSTYFNCYPQQPMVQTRTIRL-------------- 747 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 ++ + + AI D++D+ L + ++ Sbjct: 748 -----------SRYHEMPCGQNAMVAIMSYSGHDIEDALLMNKASLDRGFGRRYYLSKLD 796 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + + ++ ++ + + + L D + Sbjct: 797 LMLKNYQGGVIGDRIAPLDRERP--------------------ENIASPQYSLLDADGII 836 Query: 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEK----KLEAKRRKITQGDDLAPGVLKIVKVYL 1054 G E+ + E + I +++K+ Sbjct: 837 RPGERIEKGMIYANKYVPLNFEESPVKFMAQPARYNYYPVMIQNVSVYTTETTQVIKIK- 895 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 + + Sbjct: 896 ---------------------------------TADFRRPE------------------- 903 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 + G K L QE E + ++ E++ Sbjct: 904 -LGDKFSSRHGQKGVIGLIVPQEDMPYTEDGICPDMIMNPHGFPSRMTVGKMIELVSGKV 962 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 + G F + +I + L SG+ L G TGE + G ++ Sbjct: 963 GILTGRIGNGTAFSSDRVKDIADDLIAAGYSYSGKDMLMSGITGEPLYAYIFFGPVFYQS 1022 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+V DKM AR+TG +T+QP G+++ GG R GEME L YGAA L E + + Sbjct: 1023 LKHMVKDKMQARATGQVQYLTRQPTQGRSRQGGMRLGEMERDCLIGYGAASILYERMLIS 1082 Query: 1295 SD----DVNGRT------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 SD +V + + + MP + +L E+ ++GI ++ E Sbjct: 1083 SDVYEANVCAKCGFIGYEGYCTHCKTKEYMKIVRMPYACKLLFYELMAMGIAPKVRLE 1140 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 70/237 (29%), Gaps = 45/237 (18%) Query: 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSY 73 + P +L L+ +QL+SF FIE I S + ++Y + Sbjct: 30 KWNLIPLILKSTGLIKLQLNSFNDFIESGLTKIMNANKEV-----IFSENPRVYIRYKNI 84 Query: 74 RLGEPVF-----DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 + P Q C++ TYS + V V + ++P Sbjct: 85 YVDRPKIRNQILTPQMCRLSDETYSGNVLVDYDFVNGSTVKSFNNQ--------CIAKLP 136 Query: 129 LM------------------------TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 +M G FVINGTERV+ Q Sbjct: 137 IMLQSNRCYLYNASDETFAKYDECRYDPGGYFVINGTERVVHVQEQSPYNRILIEHL--- 193 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 + K + ++ + +P ++ RA+ T++Q + Sbjct: 194 ANGNKTAVVNSSTSTHKTRVELIWKKDTLALHHNALSEDIPIFVLFRAMGVTSDQEV 250 >UniRef50_Q5RM00 DNA-directed RNA polymerase (Fragment) n=26 Tax=Fungi RepID=Q5RM00_9HOMO Length = 898 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 159/1028 (15%), Positives = 293/1028 (28%), Gaps = 190/1028 (18%) Query: 274 IRQLEKDDVKLIEVPVEYIAGK---VVAKDYIDESTGELICAANMELSLDLLAKLSQSGH 330 IR + K I + + + + + + + + L +S Sbjct: 3 IRSAVEQGGKTISQFQVKMYHRGQERASGSVMKATIPYIKVDIPIWVVFRALGVISDRDI 62 Query: 331 KRIETLFTNDLDHGPYISETLRVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLF 389 ND + + DR AL I T + Sbjct: 63 LEHICFDMNDSSMLEMLKPCIDDGFVIQDREVALDFIGNR----GTATGLNRDKRLRYAQ 118 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 + L + EGS ++ +L+ + E+DD DH G Sbjct: 119 EILQKEMLPHI-----------SMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFG 167 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFG 507 +R+ G + FR+ ++ + V L I + ++ +K Sbjct: 168 KKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQKCVETHKEFNINMAIKTQTLTNGLKYSLA 227 Query: 508 SSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ +++ S ++H RR + L RE + R +H TH Sbjct: 228 TGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRCNT----PLGREGKIAKPRQLHNTH 283 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 +G VCP ETPEG GL+ +L++ A + G + P + + + + N Sbjct: 284 WGMVCPAETPEGQACGLVKNLALMAVISV-GSVSGPVIDFLEEWGLETLEENTQST--NL 340 Query: 615 VIAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPF 670 N V L T R + V + ++ S ++ Sbjct: 341 TKVFVNGVWLGVCRDPLNMVNTLRTLRRMQDFDSEVSI-VRDIREREIRIYSDAGRVLRP 399 Query: 671 LEHDDANRALMGANM-----------QRQAVPTLRADKPLVGTGMERAVAVDSG------ 713 L + ++ + +R VP +K V G E + G Sbjct: 400 LFIVEDHKLKLKRQHLRWLQEKWRIEERPYVPREERNKEEVSEG-ETVADEEEGRPIMRD 458 Query: 714 -----------VTAVAKRGGVVQYVDASRIV---IKVNEDEMYPGEAGIDIYNLTKYTRS 759 + R GV++ +DA I + D++ L + Sbjct: 459 ERRVKRKKKPFTWSSLIRDGVIELLDAEEEETVMICMTPDDLLESRLLRRG--LDPRAEA 516 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 + N P PS LG + + +P+ +N Sbjct: 517 DFNPAARLKPL----PIAHTWTHCEIHPSMILG-------ICASIIPFPDHNQSPRNTYQ 565 Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 + ++ I++ + R + P A+ L + Sbjct: 566 SAMGKQ--AMGIYLTNF--LMRQDTMANILYYPQKPLATTRAMEYLKFRELPA------- 614 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 + + AI + +DS + + + + + Sbjct: 615 ------------------GQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTYMD 656 Query: 940 EKD----KRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 ++ E E+ + LE + + K +P D Sbjct: 657 QEKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPPD 716 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 EE + ++ + ++ + +T + K VK+ + Sbjct: 717 --------SEELGQRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAE----GTKFVKIRVR 764 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 R Q GDK A RHG KG I EDMP+ G DI++NP +PSRM IG ++E Sbjct: 765 STRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVEC 824 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 L A +G++ +A V + ++ + Sbjct: 825 LLSKLATIVGNEGDATPFTDLTVDSVSSVLREKGYQSRGLEVMYHG-------------- 870 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 G + V +G Y +L Sbjct: 871 -HTGRKLQAQV---------------------------------------YLGPTYYQRL 890 Query: 1236 NHLVDDKM 1243 H+VDDK+ Sbjct: 891 KHMVDDKI 898 >UniRef50_B3L5F6 DNA-directed RNA polymerase n=6 Tax=Plasmodium RepID=B3L5F6_PLAKH Length = 1539 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 216/1486 (14%), Positives = 432/1486 (29%), Gaps = 207/1486 (13%) Query: 25 PYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY---------SGNSELQYVSYRL 75 +L+ +D + F+ + I +Y + + + R+ Sbjct: 84 KFLIQSHIDDYNSFVNVYLKNMPENIPVVEFSPKINTYATQNFNSKSTDSIKFYVSDIRI 143 Query: 76 GEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 PV C++ TY + +K+ + +I V G Sbjct: 144 RNPVLKNDKGETRNDYPYLCKLSARTYEGEITLKINRKTND---------EIISTTVSAG 194 Query: 126 EIPLMTDNGTFVINGTERVIVSQ----LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 IP+M + ++ + ++ Q G F S K I+ Sbjct: 195 TIPVMVLSNLCNLSSLSKKMLPQKGEDESLLGGFFVISGHLKVIRYVIHPKYNTILLNDE 254 Query: 182 SWLDFEFDPKDN-LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 + + DN ++V K + + ++ I+ Sbjct: 255 NKVHMNCLLNDNSVYVNFLSCPKFDFFTYGARYQNSLMVVPLHIILLLLSPIKKKSYLFN 314 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + ++ E A IE + K + + I VA Sbjct: 315 KMKMGIKNENAVKYIEQYIQSIFMKNGLNEKEVFEKYNLKYLGNSSYFRRGIFRYNVA-- 372 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 E G++I + + ++ ++ +TL + I++ + Sbjct: 373 -PGERKGKIILRYAILPHIQSYSEKFETICMMFKTLIFSKFKLMAKINKDSLENHAVTTC 431 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 S L+ + R F E +YD V + Sbjct: 432 SHLLSNLLKEQILTCLGRLVFRYSRNFYKFYEKKYDSFKVMVKQIYLRYKE--------- 482 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM-----------AENQF----R 465 VM +L + ++ D ++ S ++ ++ F Sbjct: 483 ------MVMDELDEKHLNMVPLEGDDSDISKAADSGNQLAMSNKSEAVKKLKSIFMDEKE 536 Query: 466 VGLVRVERAVKERLSLGDLD----------TLMPQDMINAKPISAAVKEFFGSSQLSQFM 515 VE ++E + +L T+ IS+ + S Sbjct: 537 KLFSSVESYIQELYNDNNLFVDISKSFITLTMPIIFFFKTGNISSENIGYQQRSGWVIGA 596 Query: 516 DQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL 575 D+ N L IT+ R A+ G +E R + +G +CP+ TP+G GL+N L Sbjct: 597 DEINSLRFITNFR---AIHRGCFFQEVKVLSPRKLLGEAWGFICPVHTPDGSPCGLLNHL 653 Query: 576 SVYAQTNEYGFLET-------PYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD---- 624 S ++ + E+ +K+ V D+ + I E + +S Sbjct: 654 SQFSYVHNSASNESHKLNIKLYLKKIGVNVNLDDTSGIPTIYEDQTIPILVDSVPITYIS 713 Query: 625 --EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST-----QQVVSVGASLIPFLEHDDAN 677 + V L ++ +L + +++ + + LI L + Sbjct: 714 EQDFNRVVYKLKYAKNHNLYNLKAYFEINAYLNEPLLMDSIIINTFPGRLIRPLFNLKMK 773 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN 737 + + V + + + R + +K+G + + + Sbjct: 774 CIEYISPAYQPYVAIAINYEHIKKNNLARKMLRMKERLVRSKKGTQQKMTIKEQYLFHAR 833 Query: 738 EDEMYPGEAGIDIYNLTKYTRSN---------QNTCINQMPCVSLGEPVERGDVLADGPS 788 ++ G + N + + + + + E + + DG Sbjct: 834 RMKLASSSKGNALQNSSPVKEDSGASESKISRKVLQLLEDSENKEREHTDSQGDITDGED 893 Query: 789 --TDLGELALGQNMR--------------------------VAFMPWNGYNFEDSILVSE 820 + V + + ++ + E Sbjct: 894 DYISSSNYDSSGDSCGEGSDDQSNRQSDDRSDKREGKYRHSVPPTSYTDSDENVNLDIYE 953 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 ++ ++ + + + + L + GI + T Sbjct: 954 QMPEKFEYMELKETSFLSFLGSLTPFSDHNQSPRNIYQCQMLKQ--TMGIQSLNMMYTFT 1011 Query: 881 DILVGKVTPK------------GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 + + +TP+ G + AI D++D+ + + + Sbjct: 1012 NKIYRMITPQYPLVVTRDYELYGVDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGI 1071 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG-GVEAE 987 ++ ++ K + + + + + E Sbjct: 1072 FRTHIYKTIIIDLKKNHGAGDFALGNNVRY---TNKNAGTNATSANSTSTAKNNLKFQYE 1128 Query: 988 KLDK-LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + K L +D + E + + + +E K+ Sbjct: 1129 HMGKFLNKDGLPRVQQKMVELNPLYSYVNKASELTVYEKFKEHGEYYVDCVTN--YKSTK 1186 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 +I + L R GDK A RHG KGV+S++ P EDMP+ E+G D++ NP G+PSR Sbjct: 1187 NQIGIIRLRTTRPPLVGDKFASRHGQKGVVSRLFPHEDMPFSESGIVPDVIFNPHGIPSR 1246 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE-----------FIQRAYDLGADV 1155 M IG ++E+ G AA G +I+A ++ K F+++ + Sbjct: 1247 MTIGMLIESICGKAACMYGKRIDATPFRKYTKQKSFNNEWIDNCGVKGFLEQVKQGKNED 1306 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDG-------AKEAEIKELLKLGDLPTSG 1208 + +E + +P K +LL G Sbjct: 1307 GKDSSSHAPGEEVGHSHKGKKKNDIPKGETPKGEKNNITYDEKIDYFAKLLLNKGYDYYG 1366 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 LY G G + + G +Y +L H+ DK R TG +T QPL GK + GG Sbjct: 1367 TELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPICNLTHQPLKGKKKHGGI 1426 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK--------------------- 1303 R GEME L ++G ++ + E + SD V + Sbjct: 1427 RLGEMERDGLISHGCSFIINERFLINSDGHECFVCPQCGLILSPIMQFTCSGEMVKGRSI 1486 Query: 1304 -------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + K+ +P LL E+ L I I L + Sbjct: 1487 GGRSKVAVCKSCGVSCKI--VYVPYVLRYLLNELICLNITIRLNIK 1530 >UniRef50_A7F6Y6 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7F6Y6_SCLS1 Length = 1165 Score = 509 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 186/1446 (12%), Positives = 373/1446 (25%), Gaps = 404/1446 (27%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 + + +R + P L ++ ++SF E+D GL Sbjct: 16 THEFDTIRREKLFRDPPKDHSAYPALTAAVAPHIESFNALFEKDGLIAQGLLDI------ 69 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 G+ RLG S R+ +R+ Sbjct: 70 -----GSKTYLDGDDRLGP---------------SGKNRLTVRI---------------- 93 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 +EV++ E ++ + F + R I+ R V + Sbjct: 94 -KEVFV-EKSMLPPSNKF--STKNREILPAECRERHVTYRGK------------------ 131 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 + +++ + D I +LP ++ + L K E Sbjct: 132 -MSARMEYSINNGDPKEF-IRDLGQLPLMLMSNKCHLQNNSPAQLVQNKEESEELGGYFV 189 Query: 239 MELVPERLRG---ETASFDIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIA 293 + + + +R +F + + +G T IR + D V Sbjct: 190 VNGIEKIIRLLVVNRRNFPMAIIRPSFKGRGPAYTEFGMLIRSVRPDQTSQTNVLHYLND 249 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK----RIETLFTNDLDHGPYISE 349 G V + ++ + ++ ++ K G T T D + Sbjct: 250 GNVTFRFSWRKNEFLVPAMMILKALVETNDKEIFEGLVGTPGSKGTDNTFLNDRVELLLR 309 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 T + + + R + D VG + + Sbjct: 310 TYKAYGLYTKSKTRAYLGEKFRI---------------VLGVPDTMSNYDVGTEFLRKIV 354 Query: 410 LREEIEGSGI-----LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 L + ++ + +KL + G D+ D + N+ I G + Sbjct: 355 LVHLGNTNVTEAQDKDKFKMLLFMTRKLYSLVAGDCAGDNPDAVQNQEILLGGFLFGMII 414 Query: 465 RVGLVRVERA-----VKERLSLGDLDTLMPQDMI----------NAKPISAAVKEFFGSS 509 + L +++ + + + + + + + A++ F + Sbjct: 415 KERLEDWLHTSLRMALRDYVRRSPENNFVTPEFLKDFPVKICSRTNEQVGGALEYFMSTG 474 Query: 510 QL--------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 L + ++ N L I H R I G + V Sbjct: 475 NLVSPTGLDLQQTSGFTVVAEKINFLRFIAHFRMI---HRGSFFAQLKTTTV-------- 523 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 P K+ + S V Sbjct: 524 ----------------------------------PLPKLLSELGVVSTGSSST---DESV 546 Query: 616 IAQANSNLDEEGH------FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIP 669 + Q + + + L + +G + + ++ Y+ S Sbjct: 547 VVQLDGKIMGWCSPKQSLVIADTLRYWKVEGTHGVPTNLEIGYIPNS------------- 593 Query: 670 FLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDA 729 + A R P + E V Sbjct: 594 --HGGQYPGIYLSAAPARMVRPVKY-----LALDKEDFVGPLEQPFMS------------ 634 Query: 730 SRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPST 789 + E + ++ ++ + + M Sbjct: 635 ---------IAVTEQEIEAGEHTHVEFDPTHILSILANM--------------------- 664 Query: 790 DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 P++ +N + ++ ++ T ++ +L Sbjct: 665 ---------------TPFSDFNQSPRNMYQCQMGKQSMGTPGTAIRYRTDNKAYRLQ--- 706 Query: 850 ITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK 909 T P V + + A+ Sbjct: 707 -TGQTPIVRAPLHNDYGFDNFP-------------------------NGMNSVVAVISYT 740 Query: 910 ASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE------ 963 D+ D+ + + ++ E ++ +K+ Sbjct: 741 GYDMDDAMIINKSAHERGFGHGTIYKTKKYELEEGHKSRSARNIKKLFGFAPGGLVKAEW 800 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023 ++ I ++ G + A ++ +E + + + + E Sbjct: 801 KAAIDEDGLPFIGRMVQNGDLIAAWH-----------TVSMDENGKYVNRDGQTHFEKYK 849 Query: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 E E + R I G++ + + V L + R GDK + RHG KGV S+ P Sbjct: 850 ETEIAFIEEVRLI--GNENGIEPCQAISVKLRIPRSPVIGDKFSSRHGQKGVCSQKWPAV 907 Query: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 DMP+ E+G D ++NP H + IG + ++ Sbjct: 908 DMPFTESGIQPDTIINP---------------HAFPSRMTIGMFVESL------------ 940 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 A GA D + F +E + L Sbjct: 941 ----AGKAGALHGLAQDSTPFKFDEEHK-------------------AGDYFGHQLMKAG 977 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G +Y G TGE+ + +G +Y +L H+V+DK R+TG + +T QP+ G+ Sbjct: 978 YNYYGNEPMYSGITGEELHADIYIGVVYYQRLRHMVNDKYQVRTTGPVTQLTGQPIKGRK 1037 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG----------------------- 1300 + GG R GEME +L A+G A+ LQ+ L SD Sbjct: 1038 KGGGIRVGEMERDSLLAHGTAFLLQDRLLNCSDYTKSWICKECGTFLSTQPTVSAFASKK 1097 Query: 1301 ------RTKMY-------------------KNIVDGNHQMEPGMPESFNVLLKEIRSLGI 1335 R + + V G +P L E+ ++GI Sbjct: 1098 KGTGVVRCRKCATRAEGKFGGGEVWEDGKGQRWVGGEDTTVVAVPGVLKYLDVELAAMGI 1157 Query: 1336 NIELED 1341 ++ Sbjct: 1158 KLKYNV 1163 >UniRef50_Q20EX1 DNA-directed RNA polymerase subunit beta n=2 Tax=Viridiplantae RepID=RPOB_OLTVI Length = 1416 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 257/752 (34%), Positives = 397/752 (52%), Gaps = 72/752 (9%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YR 74 R VP +++Q +SF +F+E GL PI + + EL + Y+ Sbjct: 5 LRQNSFLVPDFIAVQRNSFSQFLES------GLIQEISKRNPITNSTKELELCFYPQYYK 58 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 L P + ++ ++ TYS L + ++L K +K Q V +G +PLMT G Sbjct: 59 LSPPELNAKQSILKNKTYSCRLYIPVKLTN-------KRTKTLKLQWVVLGNLPLMTKRG 111 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNL 194 F+ING+ RVI++Q+ RSPGV+F +H+ K+ Y A +I YRG+WL E D K ++ Sbjct: 112 HFIINGSPRVIINQMVRSPGVYFKEV---SHADQKLTYYADLIAYRGAWLRIELDKKADI 168 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + R+ + KLP I+L+AL IL FE G +F Sbjct: 169 WARMKKTPKLPMLILLQALGLNLPTILKSLNYPKFFE--------------NLGHDGNF- 213 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + R + ++ E ++ + + ++ Sbjct: 214 ----------MKQLKKGRVSSRSSSQELSGSFNLSEDVSLR--------------LDDSS 249 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 + + + + + TLF + + ++ + L AL + ++ + Sbjct: 250 KNMGAENVQRAPLQKSTKKATLFGD------FSRSSVYCKTQEEALWALYALTHPLKNPD 303 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 T +S F + YDLS +GR++ N+ L E ++ D++ + LI+ Sbjct: 304 EVTANLGKSFLYRKFMNSRVYDLSPLGRLRLNQKLNLSVNENITTITAQDLLFITNTLIN 363 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 + G G+VDDID+L NRRIR+ GE+ +NQF +GL+R+E+ ++E+L L +IN Sbjct: 364 LNYGVGKVDDIDNLKNRRIRTAGELVQNQFGIGLLRLEKIIREKLKQQQTK-LSIGSLIN 422 Query: 495 AKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 KPI+ A++EFFGSS LSQFMDQ NPL+EITHKRR+S+LGPGG+ RE AG +R +HPTH Sbjct: 423 TKPINGALREFFGSSPLSQFMDQTNPLAEITHKRRLSSLGPGGVNRETAGMAIRGIHPTH 482 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH--YLSAIEEG 612 YGR+CPIETPEG N GL+NSL++Y++ N YGF+ETP+ KV G V + + SA +E Sbjct: 483 YGRICPIETPEGQNAGLVNSLTIYSRVNPYGFIETPFYKVVKGQVQNSTRPIFFSAYQEE 542 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 ++A + ++ + + + R E + +R+++DY+ VS Q++S+ SLIPFLE Sbjct: 543 KKLLAPGDIYANKLKYLPKSELPIRKLAEFTRTTREKIDYISVSPLQMISIATSLIPFLE 602 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 HDDANRALMG+NMQRQAVP + A+ P+VGTG+E VA DSG AK+ G V Y A +I Sbjct: 603 HDDANRALMGSNMQRQAVPLMTAEAPVVGTGLECRVASDSGHVLQAKKSGFVTYSSAEKI 662 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 I + P ++ + L+K S Q+ Sbjct: 663 TI------LSPVDSTPAVPKLSKGNNSPQHFH 688 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 161/514 (31%), Positives = 243/514 (47%), Gaps = 57/514 (11%) Query: 835 ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 + + + +V G V GD+L T G + Sbjct: 935 TKSMDFSTKTQLKPITYELQKLFRSNQDTSIMHRPVVREGEWVNRGDLLADNSTTVG-GE 993 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 L+ + LL A + + +D+ L +S ++ +T +E+ + + + L+ Sbjct: 994 LSLGKNLLLAYMPWEGYNFEDAIL-----ISERLVSDDAYTSLHIERYEVEIRETKFGLE 1048 Query: 955 QAKKDLSEELQ--ILEAGLFSRIRAVLVAGGVEAEKLDKLP------RDRWLELGLTDEE 1006 Q + +E + L+ ++ + G + K+ +P ++ L + + Sbjct: 1049 QITSQIPDEGKLSHLDHFGIAKPGTWVEEGDILIGKVAPMPQKNLSRYEKLLYDVVGKKI 1108 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 + L ++ + V +Y+A KR+I GDKM Sbjct: 1109 STTRDTSLRVPRGVSGRVIHVEILNAENLPP---EFVFEGPSRVNLYIAEKRKIHVGDKM 1165 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 AGRHGNKG+IS I P +DMPY +GTP+D+VLNPLGVPSRMN+GQI E LG+A + +G Sbjct: 1166 AGRHGNKGIISNILPRQDMPYLPDGTPLDMVLNPLGVPSRMNVGQIYECLLGLAGRYLGQ 1225 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 K + G + + S + + Sbjct: 1226 KFKVRPFDE--------------IYGPQTSRSLVYSKLYEARLRTGQR------------ 1259 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 L + + G+ RL+DGRTGE F +PVTVG YMLKL HLVD+K+HAR Sbjct: 1260 -------------WLFNPASPGKTRLFDGRTGECFSQPVTVGQAYMLKLIHLVDEKIHAR 1306 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK 1306 S G YSLVTQQPL G+++ GGQR GEMEVWALE +GAAYTLQE+LTVKSDD+ GR ++ + Sbjct: 1307 SIGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGFGAAYTLQELLTVKSDDIKGREQVME 1366 Query: 1307 NIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +I G PESF VL++E++SL +++ + Sbjct: 1367 SIQKNKTIS-LGTPESFKVLIRELQSLCLDVGVY 1399 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 112/324 (34%), Positives = 159/324 (49%), Gaps = 6/324 (1%) Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 +K+ G Y AS + D + Y L K RSNQ+T I P V GE V Sbjct: 918 SKKTGEALYKLASSESATKSMDFSTKTQLKPITYELQKLFRSNQDTSIMHRPVVREGEWV 977 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 RGD+LAD +T GEL+LG+N+ +A+MPW GYNFED+IL+SER+V +D +T++HI+ Sbjct: 978 NRGDLLADNSTTVGGELSLGKNLLLAYMPWEGYNFEDAILISERLVSDDAYTSLHIERYE 1037 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 R+TK G E+IT+ IP E LS LD GI G V GDIL+GKV P + L+ Sbjct: 1038 VEIRETKFGLEQITSQIP--DEGKLSHLDHFGIAKPGTWVEEGDILIGKVAPMPQKNLSR 1095 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM--QLKQ 955 EKLL + G+K S +D+SLRVP GVSG VI V++ + + + + + + Sbjct: 1096 YEKLLYDVVGKKISTTRDTSLRVPRGVSGRVIHVEILNAENLPPEFVFEGPSRVNLYIAE 1155 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 +K + G I +L + D P D L L + N + Sbjct: 1156 KRKIHVGDKMAGRHGNKGIISNILPRQDMPY-LPDGTPLDMVLN-PLGVPSRMNVGQIYE 1213 Query: 1016 EQYDELKHEFEKKLEAKRRKITQG 1039 +K + + G Sbjct: 1214 CLLGLAGRYLGQKFKVRPFDEIYG 1237 >UniRef50_Q2I5U8 DNA-directed RNA polymerase (Fragment) n=7 Tax=Fungi RepID=Q2I5U8_9FUNG Length = 1080 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 133/818 (16%), Positives = 247/818 (30%), Gaps = 149/818 (18%) Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGS 508 +R+ G + + FR ++ + V + IN+ I+ ++ + Sbjct: 2 KRLDLAGPLLASLFRTFFQKLTKDVGRYFTNCLERSRPFNLNMAINSNTITNGLRYALAT 61 Query: 509 SQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 SQ +++ S ++H RR++ + RE + R +H TH+ Sbjct: 62 GNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNT----PIGREGKLAKPRQLHNTHW 117 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 G VCP ETPEG GL+ +L++ + + G P + T+ + +S G Sbjct: 118 GMVCPAETPEGQACGLVKNLALMSIISV-GSASEPIHEFLSEWTTENLEEISPSTIGPNT 176 Query: 616 IAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 N V+ L T R + V + + ++ + + L Sbjct: 177 KVFVNGAWIGIHREPDSLVKTLKTLRRATDIDSEVSV-VHDIRENELRIYTDPGRICRPL 235 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 N +Q V + + E A+ G+V+Y+D Sbjct: 236 FVV---------NENQQLV-LKKEHILKLSEEDEDAIWG----WEKLLINGIVEYLDTEE 281 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 + M P + L +++ G+ + P+ L Sbjct: 282 EETVM--ISMSPDDLAEARGALIFDKSLDRDRTARLKA-RKPGDYCKTWTHCEIHPAMIL 338 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 G + + +P+ +N + ++ +++ R L Sbjct: 339 G-------ICASIIPFPDHNQSPRNTYQSAMGKQ--AMGVYLTNF--QLRMDTLANILYY 387 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 P V + L + + + AI Sbjct: 388 PQKPLVTTRNMQYLRFRELPA-------------------------GQNAIVAIAAYSGY 422 Query: 912 DVKDSSLRVPNGVSGTVIDVQVF-TRDGVEKDKRAL---EIEEMQLKQAKKDLSEELQIL 967 + +DS + + + + + + EK E E + K + L Sbjct: 423 NQEDSLIMSQSAIDRGLFRSIYYRSYVDAEKKTGFTQLEEFERPTRETTLKLRQGSYEKL 482 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 E F + + K LP D E + Q + E Sbjct: 483 EDDGFVAPGTRVNGDDIIIGKTAPLPMDH--------SELGTRTTQTKKDVSTGLKSSEN 534 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + T GD K VK+ + R Q GDK A RHG KG + EDMP+ Sbjct: 535 GIVDHVMVTTNGD-----GYKFVKIRVRSTRVPQIGDKFASRHGQKGTVGMTYRQEDMPF 589 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 G D+++NP +PSRM IG ++E LG + G + +A V ++ + ++ Sbjct: 590 TAEGLTPDLIINPHAIPSRMTIGHLVECLLGKVSSLTGSEGDATPFTDVTVQQISDLLRE 649 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + + Sbjct: 650 CGYQQRGFEVMYNG--------------------------------------------HT 665 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 G+ + + +G Y +L H+VDDK+H Sbjct: 666 GK----------KLSAQIFLGPTYYQRLKHMVDDKIHC 693 Score = 54.5 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 19/26 (73%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRF 1270 +RS G ++T+QP+ G+++ GG RF Sbjct: 1055 SRSRGPLQILTRQPVEGRSRDGGLRF 1080 >UniRef50_D2VXL3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VXL3_NAEGR Length = 1069 Score = 504 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 180/1254 (14%), Positives = 354/1254 (28%), Gaps = 293/1254 (23%) Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKL------PATIILRALNYTTEQILDLFFEKVIFEI 232 G L K+ I+R + P I N + Sbjct: 12 NYGGSLKATILLKNEETGAIERIPDIQLMEDFPVMINSSFCNLPKLSPKQKMLQGEEEHE 71 Query: 233 RDNKLQMELVP---ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + L + A+F + + + Sbjct: 72 SGGYFVVRGSEVVYRLLTQQRANFPFAITR--------PSWMGYKEDFTDKGILVRCRHP 123 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 + + ++V Y + + + ++++ L LF Sbjct: 124 KTLITRLVNIHYRRDGVVFMRAGNPVPFYINIVLALKALRECSDRDLFLLLT-------- 175 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 L +VE+ R P + +++ G + + Sbjct: 176 --AGTKNKVTLDRVVELLGDFRKTFPTVQTREDAII------ALGTIYDPHGLRRLEEPV 227 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 + ++ SG D ++ ++KL +G+ +++D N + +VGE+ N + + Sbjct: 228 DKNKLIKSGYEKFDFLVYCVQKLYKFVDGEIAEENLDDFDNHELLTVGEVLSNVIPLIIY 287 Query: 470 RVERAVK---ERLSLGDLDTLMPQDM--------------INAKPISAAVKEFFGSSQLS 512 + +L + T+ P + I +K + F +S Sbjct: 288 NKIQLAHGTCAKLLMKSATTMQPDMLEQKYLALFRDKCKSILSKACPNDINRLFSVGDVS 347 Query: 513 QF----------------MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556 +++ N L I+H R A G + +R + P+ +G Sbjct: 348 VSAPFRPELSQTRALFTKLERINFLRVISHFR---ATHRGIAFLDSNSTRMRRLTPSFWG 404 Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD-----GVVTDEIHYLSAIEE 611 +CP+ +P+G GL+N LS + + R V + G++ ++ Sbjct: 405 FICPVHSPDGHLCGLVNHLSQTTEIVTHQAKPKELRSVVEMCLKLGMLPSSTEKCISVSI 464 Query: 612 GNYVIAQANS------NLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 + + + D+ + + L C+ G+ L ++ + + Sbjct: 465 EDEAPVMLDGAIIGKVSHDKLQNLADQLRYCKVSGKYGLPKFMEIACQPKYSAMDIPYLP 524 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 L F + A R + + TG + + V Sbjct: 525 QLNIFTDIARAVRPV-----------------RYLPTGQDEWIGSAEQVFM--------- 558 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 I + V + + ID N + Sbjct: 559 -----NIAVTVEDIKPNTTHMEIDPTNFMSF----------------------------- 584 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 LG P+ +N + ++ ++ H + R Sbjct: 585 ----------LGN-----LTPFCNFNQSPRCIYQCQMAKQSMAAVFH----SVDHRVDTK 625 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 + P + L + + A+ Sbjct: 626 LFDMKLPQKPLTRTKHQTDLPFD-------------------------EFNNGCNAVVAV 660 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 D++D+ + ++ VF + ++ + + + + D Sbjct: 661 ISYTGYDMEDAMIMNKTSYERGMMHGTVFKTEDIDLTEGTAFLTNRVFDKTEMDS----- 715 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 +A++ + L D E+GL +E + + Sbjct: 716 -----------------DYQAKEFEDLDYDGLPEVGLPLDEGSIFANYYDPEKQKFMPMK 758 Query: 1026 EKKLEAKRRKITQGDDLAPGVLKIVK---VYLAVKRRIQPGDKMAGRHGNKGVISKINPI 1082 K +++ + P K VK + + R GDK + RHG KGV+S + P Sbjct: 759 WKDVDSATVHSVKVIATDPSDYKKVKHASITFRLNRNPIIGDKFSSRHGQKGVLSILWPQ 818 Query: 1083 EDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 EDMP+ + G DIV+NP H + IG + +M + Sbjct: 819 EDMPFTDGGIVPDIVINP---------------HAFPSRMTIGMLVESMSSKA------- 856 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 GA D + FS E + E LK Sbjct: 857 ---------GALHGYFPDATPFSFSE-------------------ENTAVDHFGEQLKKA 888 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 G +Y G G + + +G +Y +L H+V DK R G + +T QP+ G+ Sbjct: 889 GYNYHGNEVMYSGALGTTLKADIYMGVVYYQRLRHMVSDKYQCRVGGPTNAITHQPVKGR 948 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN--------------- 1307 + GG R GEME AL AYGAA +++ +D N Sbjct: 949 KKAGGVRMGEMERDALVAYGAAAVVKDRFFDCTDSSTAIVCTCCNQMNTIVKPDMGTGSG 1008 Query: 1308 -------------------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 H +P + L E+ ++G+N+++ + Sbjct: 1009 PIVSGSGIGANLDELLCCVCKTNQHLRTIYIPYTTKYLHSELAAMGVNLKICVD 1062 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 136/1070 (12%), Positives = 288/1070 (26%), Gaps = 216/1070 (20%) Query: 81 DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY------MGEIPLMTDN- 133 ++ +I GV Y L+ + L E A E ++ +P ++ Sbjct: 2 YPKDARIAGVNYGGSLKATILLKNEETGAIERIPDIQLMEDFPVMINSSFCNLPKLSPKQ 61 Query: 134 ------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 G FV+ G+E V + F + + K + + I R Sbjct: 62 KMLQGEEEHESGGYFVVRGSEVVYRLLTQQRANFPF-AITRPSWMGYKEDFTDKGILVRC 120 Query: 182 --------SWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 ++ + +F+R I+L DLF Sbjct: 121 RHPKTLITRLVNIHYRRDGVVFMRAGNPVPFYINIVLALKALRECSDRDLFLLLTAGT-- 178 Query: 234 DNKLQMELVPERLRGETASFDIEANGK-VYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 NK+ ++ V E L +F + + G +R+LE+ Sbjct: 179 KNKVTLDRVVELLGDFRKTFPTVQTREDAIIALGTIYDPHGLRRLEEP------------ 226 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 +D++ L +SG+++ + L ++ + Sbjct: 227 ---------VDKNK------------------LIKSGYEKFDFLVYCVQKLYKFVDGEIA 259 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 + +D E T S L L+ K Sbjct: 260 EENLDD-----------FDNHELLTVGEVLSNVIPLIIYNKI-QLAHGTCAKLLMKSATT 307 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEM-AENQFRVGLVRV 471 + + + K +DI+ R+ SVG++ FR L + Sbjct: 308 MQPDMLEQKY---LALFRDKCKSILSKACPNDIN-----RLFSVGDVSVSAPFRPELSQ- 358 Query: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 RA+ +L + L I+H R Sbjct: 359 TRALFTKLERIN------------------------------------FLRVISHFR--- 379 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 A G + +R + P+ +G +CP+ +P+G GL+N LS + + Sbjct: 380 ATHRGIAFLDSNSTRMRRLTPSFWGFICPVHSPDGHLCGLVNHLSQTTEIVTHQAKPKEL 439 Query: 592 RKVTD-----GVVTDEIHYLSAIEEGNYVIAQANS------NLDEEGHFVEDLVTCRSKG 640 R V + G++ ++ + + + D+ + + L C+ G Sbjct: 440 RSVVEMCLKLGMLPSSTEKCISVSIEDEAPVMLDGAIIGKVSHDKLQNLADQLRYCKVSG 499 Query: 641 ESSLFSRDQV---------DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 + L ++ D + + + A + + + + + ++ + Sbjct: 500 KYGLPKFMEIACQPKYSAMDIPYLPQLNIFTDIARAVRPVRYLPTGQDEWIGSAEQVFMN 559 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIY 751 + + + ++ G + + + ++ + + +M + Sbjct: 560 IAVTVEDIKPNTTHMEIDP---TNFMSFLGNLTPFCNFNQSPRCIYQCQMAKQSMAAVFH 616 Query: 752 NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYN 811 ++ R + ++P L + D E G N VA + + GY+ Sbjct: 617 SVD--HRVDTKLFDMKLPQKPLTRTKHQTD-------LPFDEFNNGCNAVVAVISYTGYD 667 Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE----AALSKLDE 867 ED++++++ + + + D + LD Sbjct: 668 MEDAMIMNKTSYERGMMHGTVFKTEDIDLTEGTAFLTNRVFDKTEMDSDYQAKEFEDLDY 727 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 G+ +G + G I P+ K ++ + S T Sbjct: 728 DGLPEVGLPLDEGSIFANYYDPEK---------------------QKFMPMKWKDVDSAT 766 Query: 928 VIDVQVF----TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 V V+V + K K S Q + + G Sbjct: 767 VHSVKVIATDPSDYKKVKHASITFRLNRNPIIGDKFSSRHGQKGVLSILWPQEDMPFTDG 826 Query: 984 VEAEKLDKLPRDRWLELGLT--DEEKQNQLEQLAEQYDE--------------------L 1021 + P + + E ++ L + + Sbjct: 827 GIVPDIVINPHAFPSRMTIGMLVESMSSKAGALHGYFPDATPFSFSEENTAVDHFGEQLK 886 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 K + G L + V Y ++ DK R G Sbjct: 887 KAGYNYHGNEVMYSGALGTTLKADIYMGVVYYQRLRH--MVSDKYQCRVG 934 >UniRef50_B3S5S8 DNA-directed RNA polymerase n=1 Tax=Trichoplax adhaerens RepID=B3S5S8_TRIAD Length = 1016 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 155/1004 (15%), Positives = 292/1004 (29%), Gaps = 212/1004 (21%) Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 +E L LS +G R +++ + D++ + Sbjct: 183 ILIQEQLSKNRMILEVDNKGNALSYIGSRVRQRKWGAKKLP---VDEARDLLANV----V 235 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD--------- 485 + + +DD D+ GN+R+ G++ F + +K Sbjct: 236 LSHIPSILDDKDYYGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNIPKQRAGPVNMN 295 Query: 486 ----TLMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEITHKRRISALGP--- 535 + I+ + S MD+ ++ +SALG Sbjct: 296 LRFLEFDIVKYMRQDQITNGFNLALTTGNWSIKRYKMDRAGVTQVLSRLSYLSALGMMTR 355 Query: 536 --GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 + R R + P+ +G +CP +TPEG GL+ +L++ + Sbjct: 356 ISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSDDKI-IIN 414 Query: 594 VTDGVVTDEIHYLSAIEEG--NYVIAQANSNLDEE----GHFVEDLVTCRSKGESSLFSR 647 + + ++I+ LS E + I N + + R Sbjct: 415 LLFNLGVEDINLLSGEELSLPHIYIVYVNGYVLGAARNYKKLIRTFRLLRRD-----IKT 469 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 QV + ++ S+ P + N AL G + R + +++KPLV Sbjct: 470 AQVKRILYLIANYINEFVSIYPNHTYRQINIALDGGRVCRPYIIV-KSEKPLVTIKHIEE 528 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 ++ R G+++Y+D + + + E+ I+ Sbjct: 529 LSQGIRSFDDFIRNGLIEYLDVNEEN----DCNIALYESDIN------------------ 566 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 + L P T LG + +P+ +N + ++ Sbjct: 567 ----------SKTTHLDIEPFTILG-------VCAGLIPFPHHNQSPRNTYQCAMGKQAI 609 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 T +R + + + +P V + ++ + Sbjct: 610 GTI----GYNQRNRIDTVLYQLVYPQVPLVKTKTIDLIEFDKLPA--------------- 650 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 + + A+ D++D+ + V Sbjct: 651 ----------GQNAIIAVMSYSGYDIEDAVILNKASVDR--------------------- 679 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + D I + + + VE++++ + Sbjct: 680 -------GPQADAQTGKTIWKHKVLDADGICMPGEKVESKQILINKSIPSVTSTPIAGTG 732 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 Q L+ + D+ ++K L RR + GD Sbjct: 733 QKLLQPEYIDMPMTYRGPTDAYVENVMISSNNDE-----AFLIKTLLRSSRRPEIGD--- 784 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 SR G K Sbjct: 785 ----------------------------------KFSSR-----------------HGQK 793 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 L QE + I ++ EV+ +L G F Sbjct: 794 GVCGLIVNQEDMPFTDQI------MNPHGFPSRMTVGKLMEVIGGKASLLDGKFRYGTAF 847 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 DG K ++ + L + +G+ L G TGE + G +Y +L H+V DKMHAR+ Sbjct: 848 DGDKLEDLCQTLIDYNYSYAGKDYLTSGITGEGLSAYIFFGPVYYQRLKHMVLDKMHARA 907 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK 1303 G +++T+QP G+++ GG R GEME L AYG + L E L + SD DV Sbjct: 908 KGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSMLLVERLMISSDAFEVDVCNNCG 967 Query: 1304 ------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 H +P + +L +E++S+ I L Sbjct: 968 LLAYSKWCHYCHSSCHVSSLQIPYACKLLFQELQSMNIIPRLSL 1011 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 161/1110 (14%), Positives = 296/1110 (26%), Gaps = 270/1110 (24%) Query: 5 YTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG 64 ++ + P L V L+ +DS+ FI + + Sbjct: 22 TAPVNKLEDKWKLVPAFLKVKGLVKQHIDSYNYFINCEIKKIVNANNKVT-----TDADT 76 Query: 65 NSELQYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV 114 L+Y++ +G P EC++R +TYSAP+ V + Sbjct: 77 VFYLKYLNVYVGNPDIEESFNVTKPTYPHECRLRDLTYSAPIVVDIEYT--------RGA 128 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGKV 170 + I+ Q++ +G +P+M + V+NG V +++ + P G F K + Sbjct: 129 QRIRRQKLPIGRVPVMLRSSICVLNGKSPVELAKYNECPIDPGGYFIVKGVEKVILIQEQ 188 Query: 171 LYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIF 230 L R+I + + + R +KLP L + + + Sbjct: 189 LSKNRMILEVDNKGNALSYIGSRVRQRKWGAKKLPVDEARDLLANVVLSHIPSILDDKDY 248 Query: 231 EIRDN----KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIE 286 + L+ E L + S K ++ ++R LE D VK + Sbjct: 249 YGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNIPKQRAGPVNMNLRFLEFDIVKYMR 308 Query: 287 VPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY 346 + + A + L L+ LS G Sbjct: 309 QDQITNGFNLALTTGNWSIKRYKMDRAGVTQVLSRLSYLSALGM---------------- 352 Query: 347 ISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 + I + + + + N Sbjct: 353 ----------------MTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKN 396 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 +L+ S DD I ++ L ++ V+DI+ L + + Sbjct: 397 LALMTHITTDS-----DDKI-IINLLFNL-----GVEDINLLSGEELSLP-HIYIVYVNG 444 Query: 467 GLVRVERAVKERLSLGDLDTLMPQDMINAKP---ISAAVKEFFGSSQLSQFMDQNNPLSE 523 ++ R K+ + L + + I+ + EF +S + + Sbjct: 445 YVLGAARNYKKLIRTFRLLRRDIKTAQVKRILYLIANYINEF-----VSIYPNHT----- 494 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 R+I+ G GRVC ++ S Sbjct: 495 ---YRQINIALDG-------------------GRVCRPYI-------IVKSEKPLVTIKH 525 Query: 584 YGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESS 643 L R D + I YL EE + IA Sbjct: 526 IEELSQGIRSFDDFIRNGLIEYLDVNEENDCNIAL-----------------------YE 562 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 + ++D+ ++ V A LIPF H+ + R M +QA+ Sbjct: 563 SDINSKTTHLDIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAI------------- 609 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 G + Y +RI + Sbjct: 610 ------------------GTIGYNQRNRI---------------------------DTVL 624 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 P V L + + +L GQN +A M ++GY+ ED++++++ V Sbjct: 625 YQLVYPQVPLVKTKTID-------LIEFDKLPAGQNAIIAVMSYSGYDIEDAVILNKASV 677 Query: 824 QED----RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 T I + LD GI G +V Sbjct: 678 DRGPQADAQTGKTIWKHKV--------------------------LDADGICMPGEKVES 711 Query: 880 GDILVGKVTPKGETQLT--PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 IL+ K P + +KLL+ + D + V +V + + + Sbjct: 712 KQILINKSIPSVTSTPIAGTGQKLLQ-------PEYIDMPMTYRGPTDAYVENVMISSNN 764 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 + L + + K S Q GL + + P Sbjct: 765 DEAFLIKTLLRSSRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFTDQIM------NPHGFP 818 Query: 998 LELGLTD----------------EEKQNQLEQLAEQYDELKHEFEKKLEAKRRK--ITQG 1039 + + E + ++ K G Sbjct: 819 SRMTVGKLMEVIGGKASLLDGKFRYGTAFDGDKLEDLCQTLIDYNYSYAGKDYLTSGITG 878 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 + L+ + Y +K DKM R Sbjct: 879 EGLSAYIFFGPVYYQRLKH--MVLDKMHAR 906 >UniRef50_Q0CKF7 DNA-directed RNA polymerase I polypeptide 2 n=3 Tax=Trichocomaceae RepID=Q0CKF7_ASPTN Length = 1205 Score = 498 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 183/1368 (13%), Positives = 375/1368 (27%), Gaps = 336/1368 (24%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYL---LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 Y +R R P L + +DSF + L+ Sbjct: 11 SVDYDVLRRERLFRHPPKDRTAYPSLADAIKPHVDSFNALFDGSKVLDAALKDIGTK--- 67 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 ++ GEP ++ + R R P+ +++ Sbjct: 68 ----------TFID---GEPE-TPEQKKAR--------------QAEGRRPPKRNRLNVR 99 Query: 119 EQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178 +EV++ + P + + F R+ ++ + + + L Sbjct: 100 IREVFL-DRPAIPPSNKF------------TTRNRNIYPSECRERHATYRGKL------- 139 Query: 179 YRGSWLDFEFDPKDNLFVR-IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL 237 E+ + +V + ++P + + +L K E Sbjct: 140 ----RARLEYQVNNGDWVESVRELGQVPIMLRTNRCHLEKATPEELVQHKEESEELGGYF 195 Query: 238 QMELVPERLRGE---TASFDIEANGKVYVEKGRRITARHI--RQLEKDDVKLIEVPVEYI 292 + + +R +F + +V++G T I R + D V Sbjct: 196 IVNGNEKLIRMLVVGKRNFPMAIIRGSFVKRGHTYTKYGIQIRSVRPDQTSQTNVLHYLS 255 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGH----KRIETLFTNDLDHGPYIS 348 G V + ++ + ++ ++ + G T D + Sbjct: 256 DGNVTFRFSWRKNEYLIPVMMILKALVETNDREIFEGLVGNASSEGINNTFVTDRVELLL 315 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 T + + R S + +P + + F + ++ Sbjct: 316 RTYKGYNVHTRSSCRAYLGEKFKPVLGVPSDMSNEDAGTEF----------LRKVVLPHL 365 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 + E I+ +++KL + G D+ D + N+ I G + + L Sbjct: 366 GNQNVTETQDYDKFKMIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYGMILKERL 425 Query: 469 VRVERA----VKERLSLGDLDTLM--------PQDMINAKP--ISAAVKEFFGSSQL--- 511 R+ +++ + + ++ + +A++ F + L Sbjct: 426 EEWVRSFGPILRDWSNRNNGAKFTDPAFERDFLSKIVKRSNENLGSALEYFLSTGNLVSP 485 Query: 512 -----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 + ++ N I+H R I G + VR + P +G +CP Sbjct: 486 TGLDLQQASGYTVMAEKINFYRFISHFRMI---HRGSFFAQLKTTTVRKLLPESWGFLCP 542 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN 620 + TP+G GL+N L+ + Sbjct: 543 VHTPDGAPCGLLNHLAHKCLISTSD----------------------------------- 567 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 + H + LV + ESS+ + V Q+ + + +A Sbjct: 568 ---IDVSHLPKLLVQLGVRSESSVSLDESV------PVQIDG------RIVGYCSPKQAR 612 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 + A+ R + V +E +S + G+ + A+R+ V Sbjct: 613 VVADTLRY---WKVMEMHNVPKELEIGYVPNSNG---GQYPGIYIFSQAARMFRPVKYLL 666 Query: 741 MYPGE-AGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 + + G + ++ P VS ++L+ + Sbjct: 667 LDKLDYVGPFEQPFLEIACLPEDLI----PGVSTHIEFTPTNILSIVANM---------- 712 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 P++ YN + ++ ++ T + ++ +L T P V Sbjct: 713 -----TPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYRLQ----TGQTPIVRP 763 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 + + AI D+ D+ + Sbjct: 764 PLYNAYGLDNFP-------------------------NGTNAVVAIISYTGYDMDDAMII 798 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 + ++ D + + + K Sbjct: 799 NKSSHERGFGHGTIYKTKIHSLDDKDSRRGRSRREITKLFG-----------------FA 841 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD-------------ELKHEFE 1026 G ++AE + L D +G E +YD + Sbjct: 842 PGGEIKAEWRNSLDEDGLPHIGARVREGSLVAAWHTVRYDAATDSYVNVDGITHFIKYKD 901 Query: 1027 KKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMP 1086 + G + + + V V R+ GDK + RHG KG Sbjct: 902 AEEGYIDSIRVMGAETGVEPCQSISVKYRVPRKPVIGDKFSSRHGQKG------------ 949 Query: 1087 YDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV----AKLR 1142 M I Q++E+ G A G ++ Q E Sbjct: 950 --------------------MTIAQMIESMAGKAGALHGHPQDSTPFQFSEENTATDYFG 989 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 E +++A Sbjct: 990 EQLRKAGYNYYGNEPLYSGI---------------------------------------- 1009 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 +G+ F + +G ++ +L H+V+DK R+TG + +T QP+ G+ Sbjct: 1010 ----TGKE----------FAADIFIGVVHYQRLRHMVNDKFQVRTTGPVNSLTGQPVKGR 1055 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 A+ GG R GEME +L A+GAA+ LQ+ L SD R + ++ Sbjct: 1056 AKGGGIRVGEMERDSLIAHGAAFILQDRLMNCSD--TQRAWICRDCGS 1101 >UniRef50_C4Q6P1 DNA-directed RNA polymerase I subunit, putative n=1 Tax=Schistosoma mansoni RepID=C4Q6P1_SCHMA Length = 1155 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 184/1234 (14%), Positives = 341/1234 (27%), Gaps = 274/1234 (22%) Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR---GETASFDIEAN 258 LP ++ RA N ++ + F+ + LR ++ + + Sbjct: 98 GVLPIMVMSRACNLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAIS 157 Query: 259 GKVYVEKGRRITAR--HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANME 316 + ++G T +R + +D+ I + + G+ ++ + + + Sbjct: 158 RSTFKKRGHGYTEHAIVMRCVREDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILR 217 Query: 317 LSL-DLLAKLSQSGHKRIETLFTNDLDHGPY-ISETLRVDPTNDRLSALVEIYRMMRPGE 374 +S L I LF I L+ D + + AL + + R Sbjct: 218 VSFKSLYKTFGNVRTCNISFLFLKFHIRNAMRILIRLKDDEYSSQTRALCYLGGLFR--- 274 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 DR G+ + + S + + ++KKL Sbjct: 275 ------------KRMNVPDRLSDEEAGKFLLSEYIAIH--LSSFLDKYHLLCFMIKKLHA 320 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI- 493 +G + D+ + + + R ++ + VKE++ L + + Sbjct: 321 FVSGLCCEESNDNPMFQEVLLPSTLYLQVLRAKVLHLLANVKEQVLLKSRKQNVRISLSL 380 Query: 494 -------NAKPISAAVKEFFGSSQL-------------------SQFMDQNNPLSEITHK 527 A +S A+ + L S D N L Sbjct: 381 FHQALLSRASEVSTAMVYMVSTGNLPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQF 440 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 R A+ G E VR + P +G CP+ TP+G GL+N L+ Sbjct: 441 R---AVHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLAE----PVEAVC 493 Query: 588 ETPYRKVTDGVVT-DEIHYLSAIEEGNYVIA----QANSNLDEEGHFVEDLVTCRSKGES 642 ETP + V + + H L IE + Q + +G + L T Sbjct: 494 ETPKQSVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLSTLDEAKRL 553 Query: 643 SLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD-ANRALMGANMQRQAVPTLRADKPLVG 701 +L R+ ++ +L+P + + A R P P Sbjct: 554 ALELRNSKVD-PNCKNIPHTMEITLVPSTDVGSQYPGLYLFAGGSRLLRPVKNLQCPKNS 612 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 G + + + I V E+E+ RS Sbjct: 613 AGKDVIEWIGTFEQVYL--------------NISVKEEELS--------------ERSPI 644 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 + + P +P+ +N + + Sbjct: 645 DR-----------------SHIEIAPENIFS-------FVAGLIPYPDFNQSPRNMYQCQ 680 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 + ++ + +R T P V K D Sbjct: 681 MAKQTMGHSC----YTWRNRSDAKAYRLFTPQSPLVRTKMYVKYDVD------------- 723 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 + A+ D++D+ + + ++ + ++ Sbjct: 724 ------------HYPLGFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDL 771 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 + Q K+ ++ E + L D + +G Sbjct: 772 SSLSKSTSSNNPFQKKRLVTSEY--------------YFGEKPDKG----LDLDGFPPVG 813 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 E + L A + E K E + G + L + R+ Sbjct: 814 ARLEPGVSWL--YAYTHSETLQTNFIKYEGGEQIAYVDSISLNGSWSCATITLRLPRQPD 871 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPY-DENGTPVDIVLNPLGVPSRMNIGQILETHLGMA 1120 GDK + RHG KG+ S + E+MP+ NG D++ NP G P+RM +G ++E G + Sbjct: 872 IGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGFPTRMTMGMMIEFLAGKS 931 Query: 1121 AKGIGDKINAMLKQQQ----EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 A G+ I+A Q + + + ST E Sbjct: 932 AALTGNLIDATPFQWSEDSPPYEDYCQILTDCGFNHWGTETMMSGSTGRQLEAQ------ 985 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 +Y G +Y +L Sbjct: 986 -----------------------------------IYVG-------------VVYYQRLR 997 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK-S 1295 H+V DK R+ G + + +QP+ G+ GG R GEME L ++G ++LQ+ L Sbjct: 998 HMVADKYQVRAEGRFDPILRQPIKGRKVGGGIRLGEMERDCLLSHGLVFSLQDRLVDSNC 1057 Query: 1296 DDV----NGRTK---------------------------------MYKNIVDGN------ 1312 D V + + D + Sbjct: 1058 DKVKMLACSKCGGLTHSDLARNITNTSVNQITSNNSSSFVPGTNRWCCRLCDSDSSDCVS 1117 Query: 1313 -----HQMEPGMPESFNVLLKEIRSLGINIELED 1341 + SF L E+ L + L Sbjct: 1118 RDRDNSLKYVKVSASFRYLTYELACLNVKTRLSL 1151 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 156/1148 (13%), Positives = 306/1148 (26%), Gaps = 249/1148 (21%) Query: 27 LLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV--SYRLGEPV----- 79 L + SF F+++ GL + + P++ SG+ +++ + PV Sbjct: 4 LSRVHTGSFDFFVKE------GLSRLVKHLQPLEFNSGSDVVEFKIQFIEVAPPVDSDNR 57 Query: 80 ---FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN--- 133 EC+ G+TY L++ +R+ + +V G +P+M + Sbjct: 58 STLLYPSECRRSGLTYGGELKLSVRVSVNGSPLGVL--------DVPCGVLPIMVMSRAC 109 Query: 134 ---------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLY 172 G F+++G ERV+ + + + T Y Sbjct: 110 NLSSLPRSQFYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRN-YPLAISRSTFKKRGHGY 168 Query: 173 NARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEI 232 I R D I Sbjct: 169 TEHAIVMRCVRED------------------------------------------ETVSI 186 Query: 233 RDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYI 292 + P +F +E + ++ I + L K + + ++ Sbjct: 187 LMLHWLVNGEPAL------AFIVE--REQFLVPISIILRVSFKSLYKTFGNVRTCNISFL 238 Query: 293 AGKVVAKDYIDESTGELICAANMELSL-DLLAKLSQSGHKRIET-LFTNDLDHGPYISET 350 + + + + S L L KR+ +D + G ++ Sbjct: 239 ---FLKFHIRNAMRILIRLKDDEYSSQTRALCYLGGLFRKRMNVPDRLSDEEAGKFLLSE 295 Query: 351 LRVDPTNDRLS---ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 + L L + + + F + E+ D + Sbjct: 296 YIAIHLSSFLDKYHLLCFMIKKLH------------AFVSGLCCEESNDNPMFQEVLLPS 343 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 +L + ++ +K+ + +++ K N RI + F Sbjct: 344 TLYLQV----LRAKVLHLLANVKEQVLLKSRK---------QNVRISL------SLFHQA 384 Query: 468 LVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 L+ V + +P +SA + S+ LS D N L Sbjct: 385 LLSRASEVSTAMVYMVSTGNLPPS--CKSTLSAQLSG--QSTGLSVPADNVNFLRFAAQF 440 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 R A+ G E VR + P +G CP+ TP+G GL+N L+ Sbjct: 441 R---AVHRGAFFTEMRTTSVRRLLPEAWGFFCPVHTPDGAPCGLLNHLAE----PVEAVC 493 Query: 588 ETPYRKVTDGVV-------TDEIH----YLSAIEEGNYVIAQANSN-------LDEEGHF 629 ETP + V + + I E+ N + + LDE Sbjct: 494 ETPKQSVLENIGNWLSTHKLRPIELSRQLFGVAEQQNALPVLLDGRLIGWLSTLDEAKRL 553 Query: 630 VEDLVTCRSK---------GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH------- 673 +L + E +L V + + G+ L+ +++ Sbjct: 554 ALELRNSKVDPNCKNIPHTMEITLVPSTDVG-SQYPGLYLFAGGSRLLRPVKNLQCPKNS 612 Query: 674 -DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 +G Q +++ ++ + ++R+ + + G++ Y D ++ Sbjct: 613 AGKDVIEWIGTFEQVYLNISVKEEELSERSPIDRSHIEIAPENIFSFVAGLIPYPDFNQS 672 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 + + +M G Y RS+ P L D Sbjct: 673 PRNMYQCQMAKQTMGHSCYT--WRNRSDAKAYRLFTPQSPLVRTKMYVKYDVDH------ 724 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV-SRDTKLGPEEIT 851 LG N VA M + GY+ ED++++++ + S +K Sbjct: 725 -YPLGFNAIVAVMSYTGYDMEDAMVINKASYDRGLAGACIYKSEVIDLSSLSKSTSSNNP 783 Query: 852 ADIPNVGEAALSK-------LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 + + LD G +GA + G T E L Sbjct: 784 FQKKRLVTSEYYFGEKPDKGLDLDGFPPVGARLEPG--------VSWLYAYTHSETLQTN 835 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL 964 + + + V + +G Q K S Sbjct: 836 FIKYEGGEQ--------------IAYVDSISLNGSWSCATITLRLPRQPDIGDKYSSRHG 881 Query: 965 QILEAGLFSRIRAVL-VAGGVEAEKLDKLPRDRWLELGLTD-----------------EE 1006 Q L + + L P + + + Sbjct: 882 QKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGFPTRMTMGMMIEFLAGKSAALTGNLIDA 941 Query: 1007 KQNQLEQLAEQYDELKHEF-----EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 Q + + Y++ + G L + V Y ++ Sbjct: 942 TPFQWSEDSPPYEDYCQILTDCGFNHWGTETMMSGSTGRQLEAQIYVGVVYYQRLRH--M 999 Query: 1062 PGDKMAGR 1069 DK R Sbjct: 1000 VADKYQVR 1007 >UniRef50_Q7T6X7 DNA-directed RNA polymerase subunit 2 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RPO2_MIMIV Length = 1196 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 182/1263 (14%), Positives = 360/1263 (28%), Gaps = 223/1263 (17%) Query: 144 VIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR- 202 + L + + D + S Y A + ++ +D + + + + Sbjct: 83 IKPPTLENEENLLYPLDAIRKQISYSAKYTATVTQWQ-DIVDIDTKKTETRIIGSPEKDV 141 Query: 203 ---KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANG 259 K+P ++ + N T +I + F + + Sbjct: 142 PIAKIPIMVLSKYCNLTLR-----------PDIAGKHCKY--------DAGGYFIVNGSE 182 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEV------PVEYIAGKVVAKDYIDESTGELICAA 313 KV + I + + ++D L+ P G + +I + Sbjct: 183 KVVLSVESMIPRKPVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSI 242 Query: 314 NMELSLDLLAKLSQSGHKRIETLF--TNDLDHGPYISETLR------VDPTNDRLSALVE 365 + + + G + E + D+ + L P+ + AL Sbjct: 243 PHFKEVSIFTFIRALGIETDEDIVDSILDVKKEKDLLNLLSICMNSSNTPSVTKEEALEI 302 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS-LLREEIEGSGILSKDD 424 + ++ + T E E RY + + + E I Sbjct: 303 MANQIKSTKTFTDTNPEVKAEQR----RRYLDKIMTQFVLPHITSGTGDPEIDKIYKAHY 358 Query: 425 IIDVMKKLIDIRN-------GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 I ++ KL+ DD D + N+RI G + F+ ++ + Sbjct: 359 ICYMIHKLLKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNK 418 Query: 478 RLSLGDLDTLMPQDMI---NAKPISAAVKEFFGSSQ--------LSQFMDQNNPLSEITH 526 ++D P ++I I +++ + LSQ +++ N L +++ Sbjct: 419 IFRTKNIDDKKPPNIIPHIKPNSIEQGLRQALSTGNFGSQSRKGLSQMLNRMNHLHSLSY 478 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG-PNIGLINSLSVYAQTNEYG 585 RR+ + P R +H T YG +CP+E+PEG P GL+ ++++ Sbjct: 479 MRRV--ITPTVDASTMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAMMEGITINM 536 Query: 586 FLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGE 641 + P + + + YV N N DL R +GE Sbjct: 537 NSQIPIIESYLIGKITTLESANKKRLHQYVKVFLNGNWLGVTRNIIKIHNDLRAMRFRGE 596 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 S ++Y + + + G LI N+ M + + + + + Sbjct: 597 LSRMVGLVLNY-KTAEFHIYTDGGRLIRPYLTVTDNKLNFKPEM----LDEVNSWEEFLA 651 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ 761 E VD QY+ + ++ L K R+N+ Sbjct: 652 KFPEVIEYVDKEEEQNIMLAVFPQYIQDANRIMSKKPINSRDQ--------LNKINRTNR 703 Query: 762 NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 R P LG + + +P+ +N + Sbjct: 704 Y----------DDNVYVRYTHCEIHPCMILG-------LISSNIPFPDHNQSPRGIFQYN 746 Query: 822 VVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD 881 ++ ++I + T + IP V A Sbjct: 747 QARQ--AMGLYISDYR---ERTDISYILYHPQIPLVTSRASKY----------------- 784 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKAS-DVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 G E + AI + +DS + + + + Q + Sbjct: 785 --------TGTHIFPAGENSIVAIASYTGLMNQEDSLVINDSAIQKGYMRAQALKKYMEI 836 Query: 941 KDKRALEIEEMQLKQAKKDLSEE-----LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRD 995 K + + ++ + L ++++ V+ G V ++ P Sbjct: 837 IKKNPASSQTSIFMKPDRNKVDNLRDANYDKLSEEGYAKVETVIRDGDVVIGVVNPKP-- 894 Query: 996 RWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLA 1055 ++EKQ + K ++ I+K+ + Sbjct: 895 -----TAREDEKQYKDASSI-----------YKSLIPGAVDKVITEVNNDGYPIIKMRIR 938 Query: 1056 VKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILET 1115 +R GD SR Sbjct: 939 SERIPNVGD-------------------------------------KFSSR--------- 952 Query: 1116 HLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAEN 1175 G K K + + + ++ E + Sbjct: 953 --------AGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIECLLGKLC 1004 Query: 1176 LRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKL 1235 KG+ F I + L G +Y+G G++ + +G Y +L Sbjct: 1005 AVKGVYGDATPFTSVDLNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIGPTYYQRL 1064 Query: 1236 NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFG-EMEVWALEAYGAAYTLQEMLTVK 1294 +V DK H+R+ G L+T+Q G+++ GG R G EME AL A+G A L+E Sbjct: 1065 KQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGFEMERDALCAHGVAQFLKEKTVDN 1124 Query: 1295 SDDVNGRTK----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 SD + + +P +F +LL+E+ S+ I + Sbjct: 1125 SDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISKIVIPYAFKLLLQELASINILGK 1184 Query: 1339 LED 1341 + Sbjct: 1185 IRT 1187 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 48/330 (14%), Positives = 105/330 (31%), Gaps = 44/330 (13%) Query: 15 FGKRPQVL--DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 F D L+ +DSF +FIE+ S ++ L + Sbjct: 21 FALLDLFFEKDKQVLVKHHIDSFNQFIEEIIPNILQGGDNVISEKATENKIIRYRLTFND 80 Query: 73 YRLGEPV-------FDVQECQIRGVTYSAPLRVKLR----LVIYEREAPEGTVKDIKEQE 121 + P + + ++YSA + +V + + E + E++ Sbjct: 81 LGIKPPTLENEENLLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTKKTETRIIGSPEKD 140 Query: 122 VYMGEIPLMT---------------------DNGTFVINGTERVIVSQLHRSP--GVFFD 158 V + +IP+M G F++NG+E+V++S P V F Sbjct: 141 VPIAKIPIMVLSKYCNLTLRPDIAGKHCKYDAGGYFIVNGSEKVVLSVESMIPRKPVVFT 200 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK--DNLFVRIDRRRKLPATIILRALNY- 215 + + + + G+ F K +++ + I +++ +RAL Sbjct: 201 QRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKRDNSIILSIPHFKEVSIFTFIRALGIE 260 Query: 216 TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR 275 T E I+D + ++ K + L+ + + + + T Sbjct: 261 TDEDIVDSILD-----VKKEKDLLNLLSICMNSSNTPSVTKEEALEIMANQIKSTKTFTD 315 Query: 276 QLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 + + ++ I + V + Sbjct: 316 TNPEVKAEQRRRYLDKIMTQFVLPHITSGT 345 >UniRef50_A9BK45 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BK45_9CRYP Length = 1100 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 167/1274 (13%), Positives = 357/1274 (28%), Gaps = 238/1274 (18%) Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 L+ + E+ + ++ ++M + + + +F + ++ + Sbjct: 21 LIWQQIESFNYFLNTDIKKIIFMNQKKIFDSDDSFFLK-FSKLKIGLASEYLNFMEMPIS 79 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 + Y I ++ K V K+P + Sbjct: 80 PYQCRTTDSSYTGTIFFDLSFKIE-----KKKFNVFNFNLGKIPIMLQSNKCIL------ 128 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 F + + N E F ++ KV + + + R I + Sbjct: 129 --FSKNENEFLSLN--------ECPLDPGGYFILKGTEKVILIQEQVSANR-INIEQDQH 177 Query: 282 VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDL 341 + V + + K + ++ + L L G ++ + Sbjct: 178 GSICAVVNSFSSNKKIRNVVFLKNQKLYFKHKLFVEEIPLFIFLKSLGFEKDREILDLIG 237 Query: 342 DHGPYISE----TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDL 397 I E ++ + A+ I + + + + + + + Sbjct: 238 KEYENILEWSLFETKLAGITSKKQAIFYIVQRFNFNLFEKKFSDNAFKSKSYSENEFFFK 297 Query: 398 SAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVG 457 + + + G+ + ++KK+ N D+ D+ GN+R+ G Sbjct: 298 EGLTKFILTHLTPKVFYGGNLEEKGIFLSLMVKKIFSNLNQPMITDNKDYYGNKRLGLAG 357 Query: 458 EMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM-----INAKPISAAVKEFFGSSQL- 511 + F + + + L Q + + I+ ++ F + Sbjct: 358 NLVSILFEDFFRKTLKEGYKYYKLNSTKLKKNQHLELISFLRQDIITNGLEYSFSTGNWI 417 Query: 512 -----------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 +Q + + + +S I+ +I++ + R R +H + +G +CP Sbjct: 418 VKKLKIEKNGVTQTLSRLSFISSISIVTKITS----QNEKIRKIRGPRSLHSSQWGMICP 473 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE---EGNYVIA 617 +TPEG + GL+ L++ A + ++ + + + + E Sbjct: 474 TDTPEGESCGLVKDLTILAHISVK-IKTRFITQLCYDLGIENLIHPKKKNFFLEKKICKI 532 Query: 618 QANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 N + F+ + R G + + D + + + Sbjct: 533 FLNGRYLGIHNNPSYFMYSFRSMRRSGMINYYVSIFWDTFS-EEIVIFTDEGRICRPFLI 591 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 D + + ++ L K L TG+ + V+ Sbjct: 592 VDLGKVKIKNFEKKLLKKNLTFCKDLFLTGLLEFLDVNEQ-------------------- 631 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE 793 N I Q P + L P LG Sbjct: 632 ---------------------------NNAFIAQSPQ----YINNKTTHLEISPEIVLG- 659 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD 853 + + +P+ +N + ++ + L R + I Sbjct: 660 ------ICASLIPFLDHNQSPRNTYQCAMGKQAIGSI----SLNQNQRCDTILSLLIYPQ 709 Query: 854 IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 P V + G +LT I D+ Sbjct: 710 KPLVKTKMVYF-------------------------SGNNRLTSGINACVCILSYSGFDI 744 Query: 914 KDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973 +D+ + + + + + + Sbjct: 745 EDAIILNRSSIERGFFRSVIARKHKI--------------------------------LL 772 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 + L A E + + + + + + ++ Q+ + + +L K Sbjct: 773 KNSDFLGAKSFERPLPNLEKFEEKKIKKIENYGEVVKFQKKKNQFLNFEKQIFSRLSLKE 832 Query: 1034 RKITQGDDLAPGVLK----IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 K + + VK+ L R+ + GD Sbjct: 833 FKGEMIEKVIISSNFLEIFFVKLILRQIRQPEVGD------------------------- 867 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 SR G K Q+ Sbjct: 868 ------------KFSSR-----------------HGQKGVCGAICFQKDLPFSNDGIIPD 898 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 + ++ E+M G I F +K A+IK+ LK+ + G+ Sbjct: 899 LIMNPHGFPSRMTVGKVIEIMGAKIGSIFGKFIDGTPFIESKIAKIKKKLKIAGYSSEGK 958 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 + G TG V G ++ KL H+V DK+HAR G S +T+QP+ G+++ GG R Sbjct: 959 EFFFSGITGVPMLMDVFSGPVFYQKLKHMVKDKIHARGKGPCSNITRQPIEGRSRGGGLR 1018 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNG----RTKMYKNIVDGNHQMEPGMPESFNV 1325 FGEME L +YGA+ + E L + SD T + + + + +P + + Sbjct: 1019 FGEMERDCLISYGASEAIIERLLISSDLTQANFDLHTGFFTDKKKSLNIVSLKLPYACKL 1078 Query: 1326 LLKEIRSLGINIEL 1339 L +E++S+ I L Sbjct: 1079 LFQELQSMNILPRL 1092 Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 48/360 (13%), Positives = 110/360 (30%), Gaps = 45/360 (12%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 +K+F +L L+ Q++SF F+ D + F + I + L++ Sbjct: 6 KKNFNLVSYILKSKGLIWQQIESFNYFLNTDIKKI-----IFMNQKKIFDSDDSFFLKFS 60 Query: 72 SYRLG---------EPVFDVQECQIRGVTYSAPLRVKL-----------------RLVIY 105 ++G E +C+ +Y+ + L ++ I Sbjct: 61 KLKIGLASEYLNFMEMPISPYQCRTTDSSYTGTIFFDLSFKIEKKKFNVFNFNLGKIPIM 120 Query: 106 EREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTH 165 + + + + + E PL G F++ GTE+VI+ Q S + ++ + Sbjct: 121 LQSNKCILFSKNENEFLSLNECPL-DPGGYFILKGTEKVILIQEQVSANR-INIEQDQHG 178 Query: 166 SSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFF 225 S V+ + + + + F ++P I L++L F Sbjct: 179 SICAVVNSFSSNKKIRNVVFL--KNQKLYFKHKLFVEEIPLFIFLKSLG---------FE 227 Query: 226 EKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH-IRQLEKDDVKL 284 + K ++ L + ++ R + + Sbjct: 228 KDREILDLIGKEYENILEWSLFETKLAGITSKKQAIFYIVQRFNFNLFEKKFSDNAFKSK 287 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 E+ + + K + T ++ N+E L+ + + + D Sbjct: 288 SYSENEFFFKEGLTKFILTHLTPKVFYGGNLEEKGIFLSLMVKKIFSNLNQPMITDNKDY 347 >UniRef50_UPI0001924CDE PREDICTED: similar to DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT n=1 Tax=Hydra magnipapillata RepID=UPI0001924CDE Length = 1117 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 166/1226 (13%), Positives = 347/1226 (28%), Gaps = 231/1226 (18%) Query: 199 DRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN 258 +PA + + N +++ + F I + Sbjct: 36 KEIMIIPAMVRSKYCNLN-------IYKEETRDECK------------YDPGGYFIINGS 76 Query: 259 GKVYVEKGRRITARHIRQLEKD-----DVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 KV + + I + ++K+ V + + + + G + Sbjct: 77 EKVVICQDSMIKNHPMVFIKKNSNVSNKVVQVNSKSNDPTSMMQSVLIKIKKDGIMTVKI 136 Query: 314 NMELSLDLLAKLSQSGHKRIETLF---------TNDLDHGPYISETLRVDP------TND 358 ++ ++++ G + + + ++ ET D Sbjct: 137 SVLYEVNVMILFRALGIESDRDIIEICAYDKTDYHMIELLRVSLETCVNDNDDQEHKIQT 196 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 + A+ + M+ + T + FE ++ Sbjct: 197 QEEAIDLLITKMKVLKNYTNTNLSTRFEQKKLHLLDLLKTSFLPHI------EGSPSNPY 250 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN----QFRVGLVRVERA 474 + ++ KL+ + G+ VD+ D +RI ++ E+ E Q++ + + Sbjct: 251 REKAYYLGYIINKLLKVELGRAPVDNRDAYTKKRIDNIRELLEEIMIQQYKNNMNECSKQ 310 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS---SQLS------QFMDQNNPLSEIT 525 R+ D D P ++I+ + F S S Q + +N+ + +T Sbjct: 311 FTARMG-DDGDAADPYNVIHQFKAGTFEQGFKASIMIGNWSRKKGVSQMLQRNSYMQLLT 369 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 RI + + R V P+ +C + TPE NIGL+ LS+ Sbjct: 370 SLSRIDS--QSSTQSAGRLTKPRHVDPSTVPFLCVVSTPEHGNIGLVKHLSMIGSITIGD 427 Query: 586 FLETPYRK--VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE----------------G 627 T K + + +I + E N N + Sbjct: 428 KDNTEIVKEFIMTHPLVKDISEVPVYELKNMFKVFLNGEWLKVVENSYDVGDNYYDNPVI 487 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 F D + E + V + + + L + + + +M Sbjct: 488 KFYSDAKVKKISCEFNPQMTSVVFDYKDNEIRFNTDSGRLYRPVIRINGDNEMMLTKEMI 547 Query: 688 QAVPTLRADKPLVGTGMERAV-AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 + D + E + ++ + + +++ + + + Sbjct: 548 DKISLKATDVGKISDWDEFYIQYPYPIEFIDSEEQPFMLIAEDRKVLNFERKKIIDSEKH 607 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 R + + R D + PS L E+A +P Sbjct: 608 VFKGEESKIVNRFDDKFFL-------------RYDSIEIHPSVLLSEIATN-------IP 647 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 + N + ++ ++ T L ++P V Sbjct: 648 FCEKNCSTRNIYQYAQGKQGMG--VYCTAYRS---RTDLSFILYNPEVPVVNTRTSKY-- 700 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 T DIL P + AI + +DS + + Sbjct: 701 -----------TYTDIL------------PPGSNAVVAIACYSGYNQEDSIVFNMTSLQR 737 Query: 927 TVIDVQ-----VFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVA 981 + + + ++ + + + + L + + Sbjct: 738 GLFRSMSLYKYISSITKNQETSGNDKFMKPPPDKMAGTKNGNYDKLNEHGYIPEETQITK 797 Query: 982 GGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 G V K+ + D +Q + D Sbjct: 798 GDVIFGKVTPINDTTNTGRIFKDSSEQYK-----------------SYADGVIDRVYTDI 840 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 + K + +R + GDK RHG KG I DMP+ + G DI++NP Sbjct: 841 KNQDGYETRKALVRSERFPRIGDKFCSRHGQKGTIGISLRGIDMPFTKWGIRPDIIVNPN 900 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 +PSRM+I Q+ E G G ++ + ++ +++ ++ + Sbjct: 901 AIPSRMSIAQLCECLFGKVGALKGMNMDGTAFEDYDIDAMKDMLESLGYQRECEEYLYNG 960 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 G I +F Sbjct: 961 ---------------MLGKMIKHMIF---------------------------------- 971 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 +G Y +L H+V DK+HAR G +++T+Q G+++ GG R GEME A+ + Sbjct: 972 -----IGPTYYQRLRHMVQDKIHARGRGPVTILTRQAPEGRSREGGLRLGEMERDAVITH 1026 Query: 1282 GAAYTLQEMLTVKSD----DVNGRTK---------------------MYKNIVDGNHQME 1316 G A L+E + +D V G + + Sbjct: 1027 GIAKFLKERMLDCADAYSTYVCGICGMFARREDSRFSEPTPGPDDVYYCPKCNNYTDIHQ 1086 Query: 1317 PGMPESFNVLLKEIRSLGINIELEDE 1342 +P +F ++L+E+ ++ I + + Sbjct: 1087 IMIPYAFKLMLQELMAMNIAPRIRVQ 1112 Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 20/253 (7%) Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL---YNARIIPYRGSWLDFE 187 G F+ING+E+V++ Q K ++ S KV+ + + + Sbjct: 66 DPGGYFIINGSEKVVICQDSMIKNHPMVFIKKNSNVSNKVVQVNSKSNDPTSMMQSVLIK 125 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTT--EQILDLFFEKVIFEIRDN-------KLQ 238 + V+I ++ I+ RAL + + I ++K + + + + Sbjct: 126 IKKDGIMTVKISVLYEVNVMILFRALGIESDRDIIEICAYDKTDYHMIELLRVSLETCVN 185 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG-KVV 297 E K+ V K T R +K L + ++ + Sbjct: 186 DNDDQEHKIQTQEEAIDLLITKMKVLKNYTNTNLSTRFEQKKLHLLDLLKTSFLPHIEGS 245 Query: 298 AKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN 357 + E L N L ++ L ++ + +D+ I E L Sbjct: 246 PSNPYREKAYYLGYIINKLLKVE----LGRAPVDNRDAYTKKRIDN---IRELLEEIMIQ 298 Query: 358 DRLSALVEIYRMM 370 + + E + Sbjct: 299 QYKNNMNECSKQF 311 >UniRef50_A5H2B2 DNA-directed RNA polymerase (Fragment) n=3 Tax=Leotiomyceta RepID=A5H2B2_9LECA Length = 717 Score = 485 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 127/830 (15%), Positives = 248/830 (29%), Gaps = 142/830 (17%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS--LGDLDTLMPQDMINAKPISA 500 DD DH G +R+ G + N FR ++ + V+ L + + + + I+ Sbjct: 1 DDRDHFGKKRLDLAGPLLANLFRTLFNKLNKDVERYLKNCIENNREFNLTLGVKSTHITN 60 Query: 501 AVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +K + SQ +++ S ++H RR + + R+ + Sbjct: 61 GLKYSLATGNWGEQKKAASSKAGVSQVLNRFTFASTLSHLRRTNT----PIGRDGKIAKP 116 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R +H TH+G VCP ETPEG GL+ +L++ + +E + + Sbjct: 117 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVSVGAPIEGVV-DFLFQRQMESLEEYD 175 Query: 608 AIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 + + N V + R K + V + ++++ Sbjct: 176 PLTSPHATKIFVNGVWVGVHRSPAALVNAVQDLRRKQVIAYEVSL-VRDIRDREFKILTD 234 Query: 664 GASLIPFLEHDDAN-RALMGANM--QRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 ++ L + + ++ + ++ + + L +D+ + + + Sbjct: 235 QGRVLRPLFVVENDPKSPICGDLVLNKGHIEKLESDRDIPLDIDKEERVKKTYGWHGLVN 294 Query: 721 GGVVQYVDASRIV---IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 GVV+YVDA I + ++ Y L + N + Sbjct: 295 EGVVEYVDADEEETVMIVMTPYDLNVSRQVQAGYALPEDNDDP-----NARVKAPINPTA 349 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 PS LG + V+ +P+ +N + ++ + + Sbjct: 350 HTWTHCEIHPSMILG-------VCVSIIPFPDHNQSPRNTYQSAMGKQ--AMGVFLTNY- 399 Query: 838 CVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTP 897 R + P ++ L + Sbjct: 400 -DQRMETMAHILYYPQKPLATTRSMEFLKFRELPA------------------------- 433 Query: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD----KRALEIEEMQL 953 + + AI + +DS + + + + F ++ + E+ Sbjct: 434 GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSPFFRSYSDQEGRIGLNVIEQFEKPMR 493 Query: 954 KQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ 1013 K + L+ A + + K + D ELG + ++ + Sbjct: 494 SNTMKLKHGTYEKLDDDGLIIPGARVSGEDIIIGKTAPITADAE-ELGQGIKIRERRDAS 552 Query: 1014 LAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNK 1073 + E K VKV + + Q GDK A RHG K Sbjct: 553 TPLRSTESGLV-----------DQVALTTNAEGHKFVKVRMRTTKIPQIGDKFASRHGQK 601 Query: 1074 GVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLK 1133 G I EDMP+ G DI++NP +PSRM I ++E L + G + +A Sbjct: 602 GTIGITYRQEDMPFTSEGLVPDIIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDATPF 661 Query: 1134 QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEA 1193 + V + ++ + G + VF Sbjct: 662 TEVTVDSVSRLLREHGYQSRGFEVMYNG---------------HTGRKLVAQVF------ 700 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKM 1243 +G Y +L H+VDDK+ Sbjct: 701 ---------------------------------LGPTYYQRLRHMVDDKI 717 >UniRef50_UPI000186CB0F DNA-directed RNA polymerase I 135 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186CB0F Length = 1114 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 180/1323 (13%), Positives = 382/1323 (28%), Gaps = 272/1323 (20%) Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM---GEI 127 + + +P + +Y PL ++ + + + + ++ + + I Sbjct: 10 ENLKFSKPSL-----KYLTHSYGVPLDIQNEFLQTLGKPHVDSFNLLIDKGLNLICKNLI 64 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW---- 183 P+ F + G++R V Q+ ++ G + ++ ++ Sbjct: 65 PI-----HFSV-GSDRYTV-QIENLRLLYPVMPDGSFALKTQKIFPCECRQRASTYSGNL 117 Query: 184 ---LDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME 240 + + + + + D K+P I + +L + + ++ Sbjct: 118 FGKITWSVNGVNQHPIEKDF-GKIPIMIKSNRCHLKNLTPRELVEKNEHEDEWGGYFILK 176 Query: 241 LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 + +R I + RR + + + L V + + V Sbjct: 177 GHEKLIRM-----LIATRRNYPIALSRRTWKQRGASFSEKGILLRCVSEDETSTNNVLHF 231 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF---TNDLDHGPYISETLRV---- 353 D + ++ + L L + +F T D Y ++ Sbjct: 232 VTDGTVKVMLSYGRSLYFIPLCLILKSLINVSDLYVFKRLTEGRDDDFYFKSCIKTMLYD 291 Query: 354 ---DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLL 410 + A I + R P + + + + + L Sbjct: 292 VHVQGIDTHEEAKCFIGKTFRLKFPDQS--------------PWFTDAQICDLIMEKCLA 337 Query: 411 REEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR 470 + +I + +KL G+ ++ D L + I + G + + + L Sbjct: 338 IH--LNDNKDKFNLLIFMTQKLFAFVQGQCCEENADSLMVQEILTGGSIYQQVLKDRLQG 395 Query: 471 VERAVK----ERLSLGDLDTLMPQDMI----NAKPISAAVKEFFGSSQ------------ 510 ++ ++LS G L+++ M A I A+ F + Sbjct: 396 FLNNLRLVASKKLSEGKLNSISQIQMASFCKRAGGIEKAMNNFVATGNCHNSLSGLPQDK 455 Query: 511 -LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 L + N + ++H A+ G + R + P +G +CP+ TP+G Sbjct: 456 GLVIMAENINRMRYMSHF---KAIHRGAYFTTMRTTDGRQLLPEAWGFICPVHTPDGSPC 512 Query: 570 GLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF 629 GL+N LS P ++ + L + G Sbjct: 513 GLLNHLSKDCIVTN-----VPDYEILKN---------------------LSCVLTDLGVM 546 Query: 630 VEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQA 689 ++V ++ L + Y+ + Q + Sbjct: 547 PLEIVEKKNNYYDVLLDGKLIGYVADTNAQNLVQSLR----------------------- 583 Query: 690 VPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGID 749 L+ + +V +E + ++ G+ + +R++ V + E Sbjct: 584 --VLKIEGNVVPNTLEIVLVPKKDS--ESQYPGIFLFTGPNRLMRPVLNLALNKTELIGT 639 Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 + ++ +T L LA +P Sbjct: 640 FEQV-----------YLEICLKLNEAYEGLTTHKELSHTTFLSNLA-------CLIPMPD 681 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESG 869 N + ++ ++ T +H + + P + Sbjct: 682 CNQSPRNMYQCQMGKQSMGTPVH----TWDIQAETKLYRLLLPSSPLFRPGHYDAIKLDD 737 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 + A+ D++D+ + + Sbjct: 738 FPM-------------------------GVNAVVAVISYTGYDMEDAMIINKSSFERGFG 772 Query: 930 DVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 + + + + + + + L+ ++ Sbjct: 773 HGTILKSEFFHLNPDSYFERDPSKAEL-------ISKLDDDGLPFPGTLVEENDPICC-- 823 Query: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 +L++ E H E ++ G+ L Sbjct: 824 -------------------YFNGELSKYVVEKFHGKEIAY-VDNVRLCCGETLNSAS--- 860 Query: 1050 VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI 1109 V + V R GDK A R G KG+ S++ P ED+P+ ++G D+V NP Sbjct: 861 VCITFRVPRNPVVGDKFASRAGQKGICSQMWPCEDLPFTDSGLVPDVVFNP--------- 911 Query: 1110 GQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEV 1169 H + I I M A + + D + F E Sbjct: 912 ------HGFPSRMTIAMMIELM----------------AGKSASVHGKVHDATPFIFSE- 948 Query: 1170 MRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGY 1229 D + +LL+ G ++Y G G + + G Sbjct: 949 ------------------DNSAIDYFGKLLEAAGYNYYGTEKMYSGVDGREMNAAIFFGI 990 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 +Y +L H+V DK RSTG +TQQP+ G+ + GG RFGEME +L ++GA+ L + Sbjct: 991 VYYQRLRHMVLDKWQVRSTGPVDTLTQQPIKGRRRGGGVRFGEMERDSLISHGASALLHD 1050 Query: 1290 MLTVKSDDVNGR------------TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINI 1337 L SD R ++ + DG + +P F LL ++ ++ I++ Sbjct: 1051 RLFECSDKYKARSALFRCPKTGVKKEVCRLCSDGGNVKTIEIPYIFRYLLIQLAAVNIHL 1110 Query: 1338 ELE 1340 ++ Sbjct: 1111 KVY 1113 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 88/291 (30%), Gaps = 63/291 (21%) Query: 3 YSYTEKKRIRKDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 +S K + +G + + + L +DSF I++ GL +++ PI Sbjct: 14 FSKPSLKYLTHSYGVPLDIQNEFLQTLGKPHVDSFNLLIDK------GLNLICKNLIPIH 67 Query: 61 SYSG--NSELQYVSYRLGEP------------VFDVQECQIRGVTYSAPLRVKLRLVIYE 106 G +Q + RL P EC+ R TYS L K+ + Sbjct: 68 FSVGSDRYTVQIENLRLLYPVMPDGSFALKTQKIFPCECRQRASTYSGNLFGKITWSVNG 127 Query: 107 REAPEGTVKDIKEQEVYMGEIPLMTDN------------------------GTFVINGTE 142 E G+IP+M + G F++ G E Sbjct: 128 VNQH--------PIEKDFGKIPIMIKSNRCHLKNLTPRELVEKNEHEDEWGGYFILKGHE 179 Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 ++I + + + +T ++ + I R D E + L D Sbjct: 180 KLIRMLIATRRN-YPIALSRRTWKQRGASFSEKGILLRCVSED-ETSTNNVLHFVTD--G 235 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 + + + + I K + + D + L R + F Sbjct: 236 TVKVML---SYGRSLYFIPLCLILKSLINVSDLYVFKRLTEG--RDDDFYF 281 >UniRef50_Q98S96 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S96_GUITH Length = 1049 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 182/1239 (14%), Positives = 361/1239 (29%), Gaps = 254/1239 (20%) Query: 132 DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPK 191 +N + N + S G FF+ + G T + F Sbjct: 36 ENEIWNYNSFLEIKFINTSMSIGTFFEKNIGNTVTPFHSRIKDTTYSIDIYSDLFIRINN 95 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETA 251 F+ + K+P + +K F I+ + E Sbjct: 96 KKKFINNNLIFKIPLMLKCNRCILYG--------KKEDFYIK--------INECPLDPGG 139 Query: 252 SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 F I+ KV + + + + R + +K V Y + I E+ Sbjct: 140 YFIIKGTEKVILIQEKLVLNRIGIEKDKSGNFYSYVISSYKKRNTKSFIIIKENKIYFRN 199 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP----YISETLRVDPTNDRLSALVEIY 367 +E + + L G + + Y ++ ++ + Sbjct: 200 KIFIE-DIPIFIILKAFGFENNLDIIDLIGYEFESTLFYSLTESLKIGFVNQFQSVCYLM 258 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 + + T F++E Y + + ++ + + + Sbjct: 259 QKLDIRFIETN------KITFFYNESNY---QILDHILSHIIVNKNPVSQNLEKGIFMTM 309 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR--VERAVKERLSLGDLD 485 +++KL+ +D D+ GN+R+ G++ E L + +E +++ Sbjct: 310 MIRKLLYALQIPDLLDSKDYYGNKRLELSGDLVEILLEDLLHKSWIESKKFIEKKKIEVN 369 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRRISAL 533 + I + IS ++ F + +Q + + + +S + + S+ Sbjct: 370 ETIYHHFIKSDFISYGIENAFITGNWKINKYGIDKNGITQILSRLSFMSSFSMLLKTSS- 428 Query: 534 GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRK 593 + R R++HPT + +C +TPEG + GLI +L++ + + K Sbjct: 429 ---NFEKTRKSISPRNLHPTQWRFICTSDTPEGESCGLIKNLALLSHISIQEND-YFLAK 484 Query: 594 VTDGVVTDEIHYLSAIEEGNY---VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 V + + D S NY N L F + C S V Sbjct: 485 VCNILGVDS-KLSSIKTIKNYLNMTKIFLNQKLIGFHQFPSKFLFCFRNMRRSNLIESSV 543 Query: 651 DYMDVSTQQ---VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 ST + ++S L L + + + Sbjct: 544 SIYWDSTMKLIWILSDKGRLCRPLYIIENGILKSKKKHLKLYSKKII------------- 590 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 + + G ++Y+D++ D + S Sbjct: 591 ------NWNILTKFGFIEYIDSNEEN----------NTIIADSLKAINFRSS-------- 626 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 L LG + + +P++ +N + ++ Sbjct: 627 --------------HLEISEGNILG-------ISASLIPFSDHNQSPRNTYQCSMGKQ-- 663 Query: 828 FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKV 887 + SR I P + L+ + Sbjct: 664 --SASFLGFNQNSRIDITLSLLIYPQKPILKTKILNLI---------------------- 699 Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 G + +I DV+D+ + + V + +E Sbjct: 700 ---GAGKCPTGINTCISIMSFTGYDVEDAIILNKSSVERGFFKTAFLRKTKIEISSFRHL 756 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + E +I + L Sbjct: 757 TQLFSKVNHNNKEVFEFLNKSNNNNQKITSNL---------------------------- 788 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 K + G DL + K + R + GDK + Sbjct: 789 --------------------KYSDNLVVVKYGLDLT-----LAKFLIRECRNPEIGDKFS 823 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDK 1127 RHG KG+ I P +DMP+ E G DI++NP G PSRM IG+ +E L + G Sbjct: 824 SRHGQKGICGFIKPQQDMPFSEKGICPDIIMNPHGFPSRMTIGKTIEIILSKSGCISGKF 883 Query: 1128 INAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF 1187 + + ++ + + + ++ + + T + Sbjct: 884 KDGSIFKKININTIVKSLRSFGFVSNGEDFMYNGITGNLI-------------------- 923 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 ++Y G ++ +L H+V DK+H+R+ Sbjct: 924 ---------------------NNQIYSGI-------------VFYQRLKHMVKDKIHSRA 949 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 TG S +T QP+ G+++ GG RFGEME L ++GA+ + L + SD + Sbjct: 950 TGIKSKLTYQPVEGRSKGGGLRFGEMERDCLISFGASELALDRLLLNSDCYEAKFDKNSG 1009 Query: 1308 IV----DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 I+ + + +P + +LL+E++S+ I L Sbjct: 1010 IIHTSNSNTNVVAVKIPYACKLLLQELQSMNIIARLNFN 1048 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 104/361 (28%), Gaps = 51/361 (14%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSV-FPIQSYSGNSELQYVSYRLGEPV 79 L L+ Q++S+ K I Y L + + + I +Y+ E+++++ + Sbjct: 6 YLISRGLIWQQIESYNKLI------NYQLISILKKIENEIWNYNSFLEIKFINTSMSIGT 59 Query: 80 F---------DVQECQIRGVTYSAPLRVKL-----------------RLVIYEREAPEGT 113 F +I+ TYS + L ++ + + Sbjct: 60 FFEKNIGNTVTPFHSRIKDTTYSIDIYSDLFIRINNKKKFINNNLIFKIPLMLKCNRCIL 119 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 ++ + + E PL G F+I GTE+VI+ Q K S Y Sbjct: 120 YGKKEDFYIKINECPL-DPGGYFIIKGTEKVILIQEKLVLNRI---GIEKDKSGNFYSYV 175 Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 R + F +P IIL+A F + Sbjct: 176 ISSYKKRNTKSFIIIKENKIYFRNKIFIEDIPIFIILKAFG---------FENNLDIIDL 226 Query: 234 DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY-I 292 + L + V + IR +E + + Y I Sbjct: 227 IGYEFESTLFYSLTESLKIGFVNQFQSVCYLMQKLD----IRFIETNKITFFYNESNYQI 282 Query: 293 AGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR 352 +++ ++++ + +++ + L + + +S L Sbjct: 283 LDHILSHIIVNKNPVSQNLEKGIFMTMMIRKLLYALQIPDLLDSKDYYGNKRLELSGDLV 342 Query: 353 V 353 Sbjct: 343 E 343 >UniRef50_Q8HTL6 DNA-directed RNA polymerase subunit beta N-terminal section n=3 Tax=Eukaryota RepID=RPOB1_CHLRE Length = 822 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 231/777 (29%), Positives = 371/777 (47%), Gaps = 101/777 (12%) Query: 2 VYSYTEKKRIRKDFGKRPQVLD---VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP 58 S K + F + + + + IQ +SF +E+ G+ F P Sbjct: 99 PASVDLKIKQNSFFSVKQPDFNKYLISDFVEIQRNSFFTLLEK------GIIEEFSKRNP 152 Query: 59 IQSYSGNSELQYVS--YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 I + E+ + Y+L P + + I+ +Y++ L + ++L + Sbjct: 153 ITNSKKTMEIFFYPDYYQLTPPEYSPSQAIIKSKSYTSKLYIPVQLTDKSKNI------- 205 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSS--------G 168 IK + VY+G+IPLMT G F++NG RVIV+Q+ RSPG+++ + S+ Sbjct: 206 IKLKWVYIGDIPLMTKRGHFILNGCARVIVNQMVRSPGIYYQKKIYENFSNKWSEKPENT 265 Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV 228 Y A +I RG+WL E D + ++ ++ R K+P L A+ T + +L + Sbjct: 266 FTRYFADLICNRGTWLRIEMDKYNKIWAQMKRVPKIPIMWFLIAVGLTDKIVLKTVMDSK 325 Query: 229 IFEIRDNKLQMELVPERLRG-ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 I ++ + + L +T A + K + ++ K ++L E Sbjct: 326 ILLYNLDEDPLNPRKKPLPYVKTPPAAWSAIYNIVFAKKIKA-----QEKAKKMLELTEG 380 Query: 288 PVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 T A+ +L++ ++ + I+TL Sbjct: 381 NPSS-----------KSQTKNKTSASKKSKTLNVANTKGKTPAENIKTLSELIDLEKALF 429 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 ++ E N F + YDL VGR+ FNR Sbjct: 430 LKS----------------------------EQGRKWIFNKFMNPRTYDLGKVGRVNFNR 461 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 L + L+ D++ LI + G E+DDIDHL NRR+R+ GE+ + Q VG Sbjct: 462 KLKLSISQDITTLTPQDLLAATNNLILVSKGLRELDDIDHLKNRRVRTSGELIQIQIGVG 521 Query: 468 LVRVERAVKERLSL----------------------------GDLDTLMPQDMINAKPIS 499 LVR+E+ ++E+++ + L ++IN KP + Sbjct: 522 LVRLEKTIREKMTYASGLSSLPSQKFAFRSSKQRNQSPVGDAENATQLTIGNLINTKPFN 581 Query: 500 AAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 A++EFFG+S LSQFMDQ NPL+E+THKRR+S++GPGG+TR+ A +R +HP+HYGR+C Sbjct: 582 GALREFFGTSPLSQFMDQINPLAELTHKRRLSSMGPGGVTRDSATLAIRGIHPSHYGRIC 641 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIA 617 P+ETPEG N GL+NSL+ YA+ N G++ETP+ +V G V + +++ SA +E + Sbjct: 642 PVETPEGKNTGLVNSLTAYARVNAAGYIETPFYRVYKGQVQKKTGLYFFSAKQEEKIKLG 701 Query: 618 QANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 + E G + + R + + SR+++ Y+ V+ Q++S+ SLIPF EHDDAN Sbjct: 702 APDLYTSEIGFLPKASIPVRIVEDFTKISRNEIQYVGVAPIQMISIATSLIPFFEHDDAN 761 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVI 734 RALMG+NMQRQAVP L+ +P+VGTG+E DSG AK G+V Y + I+I Sbjct: 762 RALMGSNMQRQAVPILKPQRPIVGTGLEARAVSDSGHVITAKSSGIVMYTSSKEIII 818 >UniRef50_Q1L6W1 DNA-directed RNA polymerase (Fragment) n=1 Tax=Lunularia cruciata RepID=Q1L6W1_9MARC Length = 789 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 149/927 (16%), Positives = 284/927 (30%), Gaps = 198/927 (21%) Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL-----------SQFMDQ 517 + + +++ LS + + + K I+ + F S + + Sbjct: 6 NTMRKRLQKHLSK-NQELSSIDKYVEDKVITRGFRNSFSSGNWMGHDLMKNSGIVFDLKR 64 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 +NP+S + R + P + + G + R + +GRVCPI+TP+G GL+ ++++ Sbjct: 65 SNPISTLCQLRELRQYVPPTV---KVGEDARHPTFSQWGRVCPIDTPDGEACGLVKNMAL 121 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH------FVE 631 + G E P + + +++ G + N ++ Sbjct: 122 TGIVSSAGT-EAPVIDFLESNGMIPLESVTSDTLGMVMKVFVNGRWLGVVKHTHFEPIIK 180 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVS-TQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 L R + ++ + +V + QV + ++ L N+ + + Q + Sbjct: 181 GLRALRKRPPTAELYQMEVVIIRPKFEIQVSTDSGRVLRPLLVVRHNKMNLNQDSVTQYI 240 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 R G ER +E + Sbjct: 241 SEKR------GLPHERFTWFLQKHVIELLG-----------------VEEEEKALIALHG 277 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 +L K Q PS LG + + +P+ Sbjct: 278 ADLEKAN-------GLQS------RKTVEFSHAEIHPSLILG-------LSASVIPFPHR 317 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N L + I + R G + V ++ L + I Sbjct: 318 NQSSRNLFQAHKHSKQ---AIGVYVTNLACRADTSGQHLFYPQVQLVKTNIVNCLQKDEI 374 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 + + AI + +DS + + + + Sbjct: 375 -------------------------FSGQNAIVAIACYTGYNQEDSIIMDQSALDRGMFR 409 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQ--AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 Q + E+ + QILE I L V K Sbjct: 410 TQHYRTFKSEERSDHETFGKPSAADDSGGPRAMRSDQILEDDGLPYIGCNLGMNDVIVGK 469 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLK 1048 + ++ + + + +K ++ + Q ++ K Sbjct: 470 -----------IVTHSQKNTQSADSARLVDTSTRLKAHEKGRVEQVILVQDEE----GKK 514 Query: 1049 IVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMN 1108 I KV L R Q GDK + HG KG++ + ED+P+ G DI++NP PSR Sbjct: 515 IAKVKLRETRIPQVGDKFSRMHGQKGIVGMVFTQEDLPFTNEGIVPDIIINPHAFPSRQT 574 Query: 1109 IGQILETHLGMAAKGIGDKINAMLKQ-QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 +GQ+ E+ LG A G+++ A V + E + + G + + Sbjct: 575 LGQMCESALGKAIAKRGEQLFATPFNPASTVESITEALHESGYNGWGMETMYNG------ 628 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 +G+ + + Sbjct: 629 --------------------------------------YTGKA----------MVAKIFI 640 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G + +L H+V+DK+ RS G +T+QP+ + + GG +FGEME L A+GAA TL Sbjct: 641 GSTFYQRLTHMVEDKIKYRSRGHVHPLTRQPVSDRKRHGGVKFGEMERDCLIAHGAAATL 700 Query: 1288 QEMLTVKSDDVNGRTK---------------MYKNIV-----------------DGNHQM 1315 QE SD + + Sbjct: 701 QERTFHLSDYHEIHICRSCKQMAHMGIDRIPTCRFCKEKNKKVVKGKKTDKTETKVEEIV 760 Query: 1316 EPGMPESFNVLLKEIRSLGINIELEDE 1342 + +P + +L++E++S+GI++ L+ E Sbjct: 761 KVEIPYACKLLIQELQSMGISVGLDTE 787 >UniRef50_A0BY74 DNA-directed RNA polymerase n=2 Tax=Paramecium tetraurelia RepID=A0BY74_PARTE Length = 1115 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 170/1382 (12%), Positives = 353/1382 (25%), Gaps = 351/1382 (25%) Query: 29 SIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIR 88 ++SF GL R + PI+ Sbjct: 14 KHHIESFNYLYTH------GLVEICRHLSPIE---------------------------- 39 Query: 89 GVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQ 148 + + I +E+ +G M + G RV+ +Q Sbjct: 40 -----------VCVPGNRDIRLPFKNMKIWIEELQIG----MPTQQGML--GDNRVLPTQ 82 Query: 149 LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATI 208 K Y A ++ E D VR+ ++P + Sbjct: 83 ----------------CRQMKKSYTAPMLATICR----EIDDNPKETVRLS-LGEIPILV 121 Query: 209 ILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 + + +L ++ + + +R I+ K Sbjct: 122 KSQKCHLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRML----IIQKRNYPIAFKRPG 177 Query: 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 + V++ V + A + +D + I EL + ++ L Sbjct: 178 YKNKGFNF-SPYAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRAL 236 Query: 329 GHKRIETLFT----------NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 ++ + D + + N + AL I R++R Sbjct: 237 TDMNDYQIYQQIVRSQADKSDISDRVEVMIADAKSRGINTQKDALEYIGRLLR------- 289 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 E F+ + DL VGR+ + + ++ ++KL + Sbjct: 290 ------VELNIFNPETTDL-QVGRIFLREHICVH--LDNDQDKASILLLCIEKLYALFID 340 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL----SLGDLDTLMPQDMIN 494 + D++D L N+ + G + R L + V+E++ + Sbjct: 341 EINPDNLDSLVNQEVLLSGHLYTAYLREKLEDLLVGVREKILKDATKEQSKLKDLAYFKR 400 Query: 495 ----AKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISALGPG 536 + ++ F + L + D+ N + ++H R ++ G Sbjct: 401 CFDLQTTVGEKLENFLATGNLRSQTGLDLMEASGFTIIADKLNNMRFLSHFR---SVHRG 457 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 + VR + P +G VCP+ TP+G GL+N +++ + E ++ Sbjct: 458 SYFAQMKTTTVRKLLPDVWGFVCPVHTPDGGPCGLLNHITMSCVPLTHP-DEQDIEELLF 516 Query: 597 GVVTDEIHYLSAIE-----EGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 + + + +I NS+L F + +S G +V Sbjct: 517 PLGVQSQRLIYSKNDLPVVLNGKLIGYLNSSLL--PTFEHTIRVYKSNGTIKET--TEVA 572 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 + + + + R P + + ++ Sbjct: 573 CLPRQENKSPLFPG-------------IYINTTVARLMRPVIN-----LKLNTIEWISPL 614 Query: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 + + ++ I+ + Sbjct: 615 EQINM---------SIACTQADIRTD---------------------------------- 631 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 P+ L + + +P+ YN + ++ ++ + Sbjct: 632 --------TQYQEIDPAYILS-------ILASNVPFLNYNQSPRNMYQCQMAKQTMGSPC 676 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 H R + P V Sbjct: 677 HNYPY----RFDNKMYRILFPQKPVVRCFGYDDYQF------------------------ 708 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEM 951 + A+ D++D+ + + ++ + ++ Sbjct: 709 -ADYASGTNAIVAVISYTGYDMEDAMILCKSSYERGFGHGIIYKSSEYSLNDDKEVKYKL 767 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQL 1011 + + + +I++ + + ++ L + Q Q Sbjct: 768 LSQIPVQLYN------------QIKSQIPVNLLPYGLPEQSQVVTKGTAVLALYDSQLQQ 815 Query: 1012 EQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 ++ D E+ + + V + + R GD Sbjct: 816 VKVHHSKDSETARIEQVAVVNKSENDVS----------VMIKYRINRNPIIGD------- 858 Query: 1072 NKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 SR G K Sbjct: 859 ------------------------------KFSSR-----------------HGQKGVMS 871 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF---- 1187 L Q E + ++ E M N+ +G T F Sbjct: 872 LLWPQIDMPFSESGMVPDIIINPHAFPSRMTIGMLIESMAAKANVLQGEMFETHPFQNYE 931 Query: 1188 DGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS 1247 + + L G LY G G + + G +Y +L H+V DK ARS Sbjct: 932 NDNVVDYFGKQLIKHGYNYHGNETLYSGIYGTPLKVDIYFGVVYYQRLRHMVSDKSQARS 991 Query: 1248 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK 1303 G ++TQQP+ G+ + GG R GEME AL A+G AY + + L SD + + Sbjct: 992 MGPVDVLTQQPIKGRKKGGGIRLGEMERDALIAHGVAYCINDRLLKCSDYSETYICDKCG 1051 Query: 1304 ------------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 Y + +P L+ E+ ++ + +E Sbjct: 1052 NMLATYQFVQLLSLENIQSVQSSHPYCVRCKQAKCSKVAIPFVLRYLVNELAAMNVKLEF 1111 Query: 1340 ED 1341 Sbjct: 1112 SV 1113 >UniRef50_Q06SE7 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Stigeoclonium helveticum RepID=RPOB1_STIHE Length = 696 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 226/735 (30%), Positives = 361/735 (49%), Gaps = 57/735 (7%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGE 77 + +P + +Q SFQ+F+E GL PI + + E+ Y+L Sbjct: 4 EKYFIPDFVELQRRSFQRFLE------TGLIEELNKRNPITNSQKDLEILLYPEYYKLAP 57 Query: 78 PVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFV 137 P ++ + + TYS L V +L K I + V +G+IPLM+ G FV Sbjct: 58 PRWNSLDAILLSKTYSCRLYVPAQLTN-------RKTKQIMFKWVQLGDIPLMSKRGHFV 110 Query: 138 INGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL---YNARIIPYRGSWLDFEFDPKDNL 194 +NG RVI++Q+ R PG++F + SS K L Y A I RG+WL D + + Sbjct: 111 VNGAARVIINQIVRGPGLYFSEIQYNVDSSKKTLVRRYAAEFISMRGTWLRLSIDKEKMI 170 Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 + + + K+P L + T + + + K + + L+ + + D Sbjct: 171 WAELKKTPKIPLVWFLLGMGLTEKILFQSLTQP--------KRLLYNYLDYLKIDNLAID 222 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 +++ + ++ +L ++K ++ ++ Sbjct: 223 VKSQNDAFAKRALLRELLLKSKLNSSNIKTLKNSKDFKP--------------------- 261 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 + L D+ +++ K N + + N L AL IY + + Sbjct: 262 LLLVNDIYSEMHSYKEKENRRYPLNSQNGDLADEKEKIPYYANSSLKALELIYSKITNTK 321 Query: 375 PPTREAAE-------SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 T + F + YDL GR+ N+ L L+ D++ Sbjct: 322 KITNLNKKFFAKQGQKWIFKKFMNPRTYDLGLHGRLSLNKKLSLSLPLSQRTLTMYDVLV 381 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTL 487 + L+ + G DDID+L NRR+R+ ++ + Q +GL+R+E+ ++ + + Sbjct: 382 ATEHLLRVEQGLLGTDDIDNLKNRRVRTSSDLIQMQIGIGLLRLEKNIRSKFTTIKG-VP 440 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 + KP++ A+KEFFG++ LSQFMD NPL+E+THKRR++ LGPGG++R+ A ++ Sbjct: 441 KINYFFSTKPLNGALKEFFGTNPLSQFMDMINPLAEMTHKRRLTTLGPGGVSRDTATMDI 500 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHY 605 R +HPTHYGR+CP+ETPEG N GL+N+L+ +A+ N G +ETP+ KV G V + Y Sbjct: 501 RGIHPTHYGRICPVETPEGKNAGLVNALTTFARVNPEGLIETPFYKVYKGQVQKKAGFFY 560 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 LSA +E +IA + NL + G + L+ R E + R+ VD+M VS Q++SV Sbjct: 561 LSAEKEEKAIIAAGDLNLSKTGFLPKGLIPVRKFDEFTKVLRNYVDFMSVSPLQMISVAT 620 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 SL+PFLEHDDANRALMGANMQRQAVP +R+++ +VGTG+E +A DSG AK GG+V Sbjct: 621 SLVPFLEHDDANRALMGANMQRQAVPLVRSEQAIVGTGIETRIASDSGHVIRAKAGGLVG 680 Query: 726 YVDASRIVIKVNEDE 740 YV +I I Sbjct: 681 YVSGQKIRIYTFVSN 695 >UniRef50_Q1KVX4 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Scenedesmus obliquus RepID=RPOB1_SCEOB Length = 726 Score = 465 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 222/732 (30%), Positives = 361/732 (49%), Gaps = 41/732 (5%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 +P L+ IQ F +E+ G+ PI + E+ + YRL +P + Sbjct: 8 IPDLVEIQRQGFFYLLEK------GIIEEISKRNPITCFEKQIEIFFYPQYYRLTKPFYS 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 +Q+ +Y + + ++L + K I + + + PLMT+ G F++NG+ Sbjct: 62 IQQAIFYKKSYVSKFYIPVQLT-------DRKTKRIFLKWILLAHFPLMTNRGHFLLNGS 114 Query: 142 ERVIVSQLHRSPGVFF--------DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 RVI++QL RSPG++F + + S+ + A II +G+WL E D + Sbjct: 115 ARVIINQLVRSPGIYFRENMHEIFSNKWSEKPSTTFRRFYADIICLKGTWLRIECDKDFS 174 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEK----VIFEIRDNKLQMELVPERLRGE 249 ++ ++ + K+P L + + + IL+ ++ F K+Q + L+ Sbjct: 175 MWAKMKKGPKIPLLWFLLGMGLSEKYILNSVYKPMNLLQSFTKEMEKMQKSKSSKELKYP 234 Query: 250 TASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGEL 309 S +A ++ + T R L+K++ K + K+ AK + Sbjct: 235 YISSTKQAWEQIQKLFKLKKTLRKFSFLKKNEEKPKTFIFGQSSTKIEAKVVFSD----- 289 Query: 310 ICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRM 369 A N + + S ++T F E + + T ++ Sbjct: 290 FAAFNNSVKRENTVFASNDDTFLVQTSFETKKKKNTRKKENFQKNKTQKTTKLSLQNKEK 349 Query: 370 MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVM 429 + E F N F + YDL GR N+ L L+ D++ Sbjct: 350 RVASKLEAYELGRKWFANKFMNPRTYDLGKQGRWLINKKLGLTIPLEQTTLTALDVLTAT 409 Query: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS-------LG 482 L+ I +G E+DDIDHL N+R+R+ GE + F +GL+R+E++++ +L+ Sbjct: 410 DSLMKIEDGFFEIDDIDHLKNKRVRTAGEALQEIFSIGLIRLEKSIRLKLNGNGQQSFFQ 469 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRER 542 +++ +PI+ A +EFFG+ LSQFMDQ NPL+EITHKRR+S+LGPGG++R+ Sbjct: 470 KTSFFNFDSLMSTRPINGAFREFFGTHPLSQFMDQINPLAEITHKRRLSSLGPGGVSRDT 529 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 A +R +HP+HYGR+CPIETPEG N GL+NS++ Y++ + +G+LE+P+ KV G V Sbjct: 530 ATLAIRGIHPSHYGRICPIETPEGKNTGLVNSITTYSKISFHGYLESPFYKVYKGQVQRN 589 Query: 603 I--HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 + YLS ++ ++ A + NL G + + R ++ M VS Q+ Sbjct: 590 LGVFYLSPDKDDHFQTATPDLNLTPLGFLPKKPIPVRIGKRFVRMKTHKLALMGVSPLQM 649 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 +SV S IPFLEHDDANRALMG+NMQRQAVP +R ++PL+GTG+E V DSG +AK Sbjct: 650 ISVATSFIPFLEHDDANRALMGSNMQRQAVPLIRPERPLIGTGLEARVVSDSGHAILAKT 709 Query: 721 GGVVQYVDASRI 732 G + Y S+I Sbjct: 710 SGYIVYSSGSKI 721 >UniRef50_Q197F1 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 3 RepID=RPB2_IIV3 Length = 1140 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 185/1254 (14%), Positives = 359/1254 (28%), Gaps = 250/1254 (19%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 I+ ++ + K S + I E P K+ Sbjct: 80 IIDDDRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENK----EGKPPQISEQYRVPIAKI 135 Query: 205 PATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVE 264 P + + + L+ + + F I +V + Sbjct: 136 PIMLGSDVCHLSKYTPLENEQINGHSQ---------------ADQGGYFIINGKERVLIS 180 Query: 265 KGRRITARHIRQLEKDDVK-------LIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 + R+ + + ++ K + + E V I + + Sbjct: 181 QVRKAYNKPVCFVKSTSQKEDVLICEMRSMCEETFHSTSVQVKMIKNKIMVSLKLKRKLI 240 Query: 318 SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI----------- 366 + + G+ + + + + L E Sbjct: 241 DIPVGIVFKCLGYNPDQ--MGSKFRSLFNLPPEYEKYIDAIKNDCLEEFAYGIAVSAADG 298 Query: 367 --YRMMRPGEPPTREAAESLFENLFFSEDRYDLSA-----------VGRMKFNRSLLREE 413 E +F + + + L Sbjct: 299 DNSDSGGESGGEEEADQEEHIVKVFRNMSTSVDKDGGMAATGITIEDVQKSLDMDLFPHL 358 Query: 414 IEGSGILSKDDII-DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 S + D++ ++KK + K VD+ D ++R+ + GE+ FR+ + + Sbjct: 359 GITSTRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRLLYKKFQ 418 Query: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMD-QNN 519 + ++ + + I+ + F S SQ ++ + + Sbjct: 419 KTC---ITQIRNRKPDISNFLRTSGITTGILYSFSSGYWGVQRNTYIRTGVSQVVNPKVS 475 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 L+ + RR+ +E E+R +HP+ VCP+ETPEG +G + +++V+ Sbjct: 476 LLANYSSLRRVVIP-ESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTVLNMAVFC 534 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSK 639 Q G D D + + + N ++ N + GH Sbjct: 535 QVTT-GISTCEIMDQIDSFGVDLKCHCTIKDPNNCLLLLINGSPYGNGH----------A 583 Query: 640 GESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL 699 + + + + + + ++ R P DK Sbjct: 584 NVIHRLNFLNDTNISI---------------VVNRALGVIEIFSDAGRFIRPIFDLDK-- 626 Query: 700 VGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRS 759 + +++Y+D + E+ Sbjct: 627 ----ICNFEGEIVPSFKWFLDNQLIRYIDINEAAANSIAIELRDLST------------- 669 Query: 760 NQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVS 819 P R +++ P G + +P+ Sbjct: 670 ---------------NPNTRYNLMELDPCGMFG-------IVAGIIPFPDRTQSARNCFY 707 Query: 820 ERVVQEDR-FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 +V++ F H + + P V + Sbjct: 708 SSMVKQAIGFVPCH------NLKTETVSHTLNYPQKPLVTTSFAEY-------------- 747 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF-TRD 937 + + AI + +DS + + + + + T Sbjct: 748 -----------NQLNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITYNTFT 796 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 EK +E A K ++ R+R + G V K Sbjct: 797 AQEKKNGIIEERIEIPSNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICK--------- 847 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 + + +++++ + Q+ E + + D +IVKV + Sbjct: 848 VTIKNKNQDEKLVDSSVIVQHGEEGYV------------DRIVDNVIDGCRIVKVVIGQM 895 Query: 1058 RRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHL 1117 R + GDK KG I P EDMP+ +G DI++NP +PSRM I QI+ T + Sbjct: 896 RTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQIISTVM 955 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 G + + ++F + Sbjct: 956 GKL-----------------------------YTVNPNPRFRNGNSFQEN---------- 976 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 E+ LKL SG +Y G TGE+ + + +G Y +L H Sbjct: 977 ----------SNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQSTIFMGPTYYHRLKH 1026 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD- 1296 +V DKMHARS G + + +QP G++Q GG RFGEME + +GA L E + + SD Sbjct: 1027 MVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQFLNERMFLNSDP 1086 Query: 1297 ---DVNGRTKMY------KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 DV M + + +P S LL+E+ +GI +++ Sbjct: 1087 FQIDVCKDCGMMSSTSKKCHHCGSINVKRCNIPYSCKNLLQELNGMGIKTKIDL 1140 Score = 94.5 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 86/250 (34%), Gaps = 49/250 (19%) Query: 16 GKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ-SYSGNSELQYVSYR 74 L+ Q+++F FI + GL+ + I+ N L++ + Sbjct: 21 KIVADYFKTNGLVKHQIETFNHFISK------GLKTIINNESSIKYQSHDNYSLKFTNIY 74 Query: 75 LGEPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 + P QE + + ++Y+ + V + + + ++ V + Sbjct: 75 VEYPSIIDDDRTIRDLYPQEARNKDLSYTGNVCVNV--IEMVENKEGKPPQISEQYRVPI 132 Query: 125 GEIPLM-------------------------TDNGTFVINGTERVIVSQLHRSPGVFFDS 159 +IP+M G F+ING ERV++SQ+ ++ Sbjct: 133 AKIPIMLGSDVCHLSKYTPLENEQINGHSQADQGGYFIINGKERVLISQVRKAYNKPVCF 192 Query: 160 DKGKTHSSGKVLYNARII---PYRGSWLDFEFDPKDNLFVRIDRRR--KLPATIILRALN 214 K + ++ R + + + + + + +R+ +P I+ + L Sbjct: 193 VKSTSQKEDVLICEMRSMCEETFHSTSVQVKMIKNKIMVSLKLKRKLIDIPVGIVFKCLG 252 Query: 215 YTTEQILDLF 224 Y +Q+ F Sbjct: 253 YNPDQMGSKF 262 >UniRef50_Q91F97 Probable DNA-directed RNA polymerase II subunit RPB2 homolog n=1 Tax=Invertebrate iridescent virus 6 RepID=RPB2_IIV6 Length = 1193 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 185/1381 (13%), Positives = 406/1381 (29%), Gaps = 272/1381 (19%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLG 76 L+ QL++F FI D + + + + R Sbjct: 28 LLKDYFQTSGLVKHQLETFDHFIFHDIKTII---------------DDEASIIFNGKR-- 70 Query: 77 EPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTF 136 + S+ ++ Y R+ E +K + V++ + P +T++ T Sbjct: 71 --------------SLSSQIKNGAVEEGYNRKESEKI--MLKFENVFVAK-PTITNDDTT 113 Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 V ++ + K + ++ + + E +L V Sbjct: 114 V---------------RPLYPAEARQKMITYDSFVFV--DVLEYVLRDEEEILVNKHLRV 156 Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIE 256 +I K+P + N + E + L G+ + Sbjct: 157 QIA---KIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYFIINGNERVLIGQLRNAYNR 213 Query: 257 AN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + + E + + + + I+ K K T +LI + Sbjct: 214 SICFRNKFSEPLTCDMRSMSEETGHSVLIQLRLNDSPISQKRNLKKLDKNGTIDLIISQT 273 Query: 315 MELSLD--LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 + L + +++ L ++ + Y+ + + + Sbjct: 274 KTPIPISFVFRVLKVATIDKLKFLIGDEEELDKYLIKIVEETSDGGIFDDMEIEISQEDD 333 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 E+ E F +D + V +++L ++ +L + I+ K Sbjct: 334 FNEENEESTEKKKITQFIEQDMFPHLGVSSTHEEKAILLGKMVRKLLLVNETSINANKFA 393 Query: 433 IDIRNGKGEV----------DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG 482 + + +D D+ N+R+ + G + FR+ R ++ +L Sbjct: 394 QRANDETNKTNKTNKMYYTQEDRDNYSNKRVETAGVLCFELFRMLYKRFIKSNINQLEKR 453 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRR 529 + + + I+ + F + ++ + + ++ RR Sbjct: 454 NRVEMDV--ISKNAFITTGLHFSFSTGNWGVQKNNYIRTGVAQIPQNKVSFGAFFSYLRR 511 Query: 530 ISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET 589 + +E ++R +HP+ CP ETPEG +G+ + S+ A+ + Sbjct: 512 FVI----PMGKEGKNTKIRQIHPSSIFFACPSETPEGQFVGITLNFSMLAEVSIRTSSVV 567 Query: 590 PYRKVTDGVVTDEIHYLSAIEEGN-----YVIAQANSNL----DEEGHFVEDLVTCRSKG 640 + + + ++EE I N + + + D+ + K Sbjct: 568 IKEIIEASHQAFKHVHEISLEENKQFLSKLSIIFVNGGICGLTSKPQQLLSDVRDLKLKH 627 Query: 641 ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 V ++ + S I + + + + Sbjct: 628 CLKYDVSA-VFIPELKEVHISSDAGRFIRPVLNLQSIK---------------------- 664 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 V G V Y DA I + I++ +L++Y Sbjct: 665 -----TNGNVMWNSFQNCLENGHVVYKDAYEIEQS---------QIAINLQDLSRYP--- 707 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 D + S LG + A +P+ + + Sbjct: 708 -----------------TVYDSMEIHASCMLG-------VMAAQIPFAEHTQSPRLCYQS 743 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + ++ +I S +T + P V + Sbjct: 744 SMAKQAIG---NIPSHHVKSDNTTRVMD--YVQRPLVTTQIAEMNRFN------------ 786 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVF-TRDGV 939 + A+ + +DS + + + V + T Sbjct: 787 -------------DFPNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYKTIIVE 833 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 E+ E M + ++ + L +V ++ D L + + Sbjct: 834 ERKIGVNEKICMPVASVRRMNNYS---LLEDNPESPYFGVVKVKSFVKRNDVL-VGKVIT 889 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 D +Q E +K+ + + K+ +A ++R Sbjct: 890 KISKDGTRQETDHSTIVSISEEGKVDRIIRTSKKGIL------------MFKIVIAQQKR 937 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119 + GDK KG + I DMP+ E+G+ D+++NP +PSRM I QI+ + +G Sbjct: 938 PEIGDKFCSAMAQKGTVGMILEEVDMPFMEDGSIPDMIINPHCLPSRMTINQIMASIMGK 997 Query: 1120 AAKGIGD-KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRK 1178 + +A Q+ + K ++ I + + Sbjct: 998 TCCAKNETFGDASPFQESSLEKPQDKIHALCKELEECGYNYN------------------ 1039 Query: 1179 GMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHL 1238 G + G G++ + G +Y +L H+ Sbjct: 1040 -----------------------------GTETMMCGWNGKKLRAEIFFGPVYYHRLTHM 1070 Query: 1239 VDDKMHARSTG--SYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 V DK+ +R++ +T+QPL G+A GG R GEME + +G + L E + +SD Sbjct: 1071 VSDKIFSRASTNQKRHAITRQPLNGRANEGGLRIGEMEKDCMLVHGISKFLHEKMFDQSD 1130 Query: 1297 D---------------VNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 V + + + +G ++ P + + +E+ ++G +E + Sbjct: 1131 KFIINLCVPCKSYFKVVKTQNGFFCSGCNGIDIVKFNCPFAAKLFFQELTAMGQKLEFKV 1190 Query: 1342 E 1342 + Sbjct: 1191 K 1191 >UniRef50_Q9H9Y6 DNA-directed RNA polymerase I subunit RPA2 n=28 Tax=Amniota RepID=RPA2_HUMAN Length = 1135 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 125/994 (12%), Positives = 261/994 (26%), Gaps = 131/994 (13%) Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL-DFEFDPKDNLFVRIDR-RRKLPAT 207 SP K + R YRG D + I + +P Sbjct: 81 VISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIM 140 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 + + N L E + + + +R + + Sbjct: 141 VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKT 200 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 R V + V E+ A + + + L L L Sbjct: 201 RGPGYTQY-----GVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKA 255 Query: 328 SGHKRIETLFTNDL---DHGPYISETL-------RVDPTNDRLSALVEIYRMMRPGEPPT 377 +F + + ++ ++ + + + L + R Sbjct: 256 LVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFR------ 309 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 D Y FN+ + S + + +KL + Sbjct: 310 ---------VKLNVPDWYPNEQAAEFLFNQCICIH--LKSNTEKFYMLCLMTRKLFALAK 358 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG------DLDTLMPQD 491 G+ D+ D L N+ + + G++ + L ++K ++T Sbjct: 359 GECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMR 418 Query: 492 MINAKP-ISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISALGPG 536 + ++ + F + L D+ N + ++H R + G Sbjct: 419 IFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFR---CVHRG 475 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 + VR + P +G +CP+ TP+G GL+N L+ + + Sbjct: 476 ADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLC 535 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEE------GHFVEDLVTCRSKGESSLFSRDQV 650 + I + + + L + E + +V Sbjct: 536 NLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEV 595 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 + ++ + S+ L F R + + ++ + + E V Sbjct: 596 VLIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFA 653 Query: 711 DS-------GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 + ++ + + D ++ + + +M G + LT RS+ Sbjct: 654 GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL--LTYQDRSDNKL 711 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 Q P L P D +G N VA + + GY+ ED+++V++ Sbjct: 712 YRLQTPQSPLVRPSMYDYYDMDN-------YPIGTNAIVAVISYTGYDMEDAMIVNKASW 764 Query: 824 QEDRFTTIHIQELACVSRDT-KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 + + + K G + I L KLD+ G+ +IGA++ GD Sbjct: 765 ERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDP 824 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD---GV 939 + L E + + + + V +++V + D G Sbjct: 825 YYSYL------NLNTGESFV---------------MYYKSKENCVVDNIKVCSNDTGSGK 863 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 K K S Q + + P Sbjct: 864 FKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSR 923 Query: 1000 LGLTD--------------------EEKQNQLEQLAEQYDELKHEFEKKLE--AKRRKIT 1037 + + ++ E + E+ + Sbjct: 924 MTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGI 983 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 G +L + V Y ++ DK R Sbjct: 984 SGLELEADIFIGVVYYQRLRH--MVSDKFQVRTT 1015 Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 86/574 (14%), Positives = 157/574 (27%), Gaps = 140/574 (24%) Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + F+P++ +N + ++ ++ + + ++ +L T P V Sbjct: 669 VIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQ----TPQSPLVRP 724 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 + D + A+ D++D+ + Sbjct: 725 SMYDYYDMD-------------------------NYPIGTNAIVAVISYTGYDMEDAMIV 759 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 V+ + ++ ++ + + + K LQ L+ Sbjct: 760 NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDG-------- 811 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE--LKHEFEKKLEAKRRKIT 1037 +G + L E + + K+ Sbjct: 812 -----------------LPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKV 854 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 +D G K V + + V R Sbjct: 855 CSNDTGSGKFKCVCITMRVPRNP------------------------------------- 877 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 IG A G K E E L Sbjct: 878 ----------TIG-------DKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGF 920 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVF----DGAKEAEIKELLKLGDLPTSGQIRLY 1213 ++ E M G+ F + + E+LK G RLY Sbjct: 921 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLY 980 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 G +G + E + +G +Y +L H+V DK R+TG+ VT QP+GG+ GG RFGEM Sbjct: 981 SGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEM 1040 Query: 1274 EVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM----------------------YKN 1307 E AL A+G ++ L + L SD V + Sbjct: 1041 ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTL 1100 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + +P F + E+ ++ I ++L+ Sbjct: 1101 CSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 73/268 (27%), Gaps = 65/268 (24%) Query: 14 DFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS--YSGNSELQ 69 +G + + L ++SF GL A +++ P + Sbjct: 23 SYGIPREQQKAALQELTRAHVESFNY------AVHEGLGLAVQAIPPFEFAFKDERISFT 76 Query: 70 YVSYRLGEPVF-----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 + + P EC+ R TY L + + Sbjct: 77 ILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQ---- 132 Query: 119 EQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPG 154 ++G +P+M + G F+ING E+VI + Sbjct: 133 ----FLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRN 188 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRR---KL 204 + K + Y + ++ + + + R+ L Sbjct: 189 FPIAMIRPK-WKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFL 247 Query: 205 PATIILRAL-NYTTEQILDLFFEKVIFE 231 P L+AL +++ QI + + Sbjct: 248 PLGFALKALVSFSDYQIFQELIKGKEDD 275 >UniRef50_P70700 DNA-directed RNA polymerase I subunit RPA2 n=33 Tax=Coelomata RepID=RPA2_MOUSE Length = 1135 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 124/994 (12%), Positives = 260/994 (26%), Gaps = 131/994 (13%) Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL-DFEFDPKDNLFVRIDR-RRKLPAT 207 SP K + R YRG D + I + +P Sbjct: 81 VISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFLGYVPIM 140 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 + + N L E + + + +R V + Sbjct: 141 VKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPRRNFPVAMVRPKWKS 200 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 R + V + V E+ A + + + L L L Sbjct: 201 RGLGYT-----QFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKA 255 Query: 328 SGHKRIETLFTNDL---DHGPYISETL-------RVDPTNDRLSALVEIYRMMRPGEPPT 377 +F + + + ++ + + + L + R Sbjct: 256 LVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECFR------ 309 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 D Y N+ + S + +KL + Sbjct: 310 ---------VKLSLPDWYPNVEAAEFLLNQGICIH--LQSNTDKFYLRCLMTRKLFALAR 358 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK---------ERLSLGDLDTLM 488 G+ D+ D L N+ + S G++ + + ++K +S+ + + + Sbjct: 359 GECMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMK 418 Query: 489 PQD------------MINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 + S F S L D+ N L ++H R + G Sbjct: 419 IFSMGTELTRPFEYLLATGNLRSKTGLGFLEDSGLCVVADKLNFLRYLSHFR---CVHRG 475 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 + VR + P +G +CP+ TP+G GL+N L+ + + Sbjct: 476 AAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFGDTASIPALLC 535 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEE------GHFVEDLVTCRSKGESSLFSRDQV 650 G+ + + + + L + E + +V Sbjct: 536 GLGVTGADTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEV 595 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 + ++ + S+ L F R + + R+ + + E V Sbjct: 596 ALIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNVAIFEDEVFG 653 Query: 711 DS-------GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 + ++ + + D ++ + + +M G + LT RS+ Sbjct: 654 GISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL--LTYQNRSDNKL 711 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 Q P L P D +G N VA + + GY+ ED+++V++ Sbjct: 712 YRLQTPQSPLVRPCMYDFYDMDN-------YPIGTNAIVAVISYTGYDMEDAMIVNKASW 764 Query: 824 QEDRFTTIHIQELACVS-RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 + + K G + + + + KLD+ G+ IGA++ GD Sbjct: 765 ERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPSIGAKLEYGDP 824 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 + + + + + + V +++V + D Sbjct: 825 YYSYL----------------NLNTGEGF-----VVYYKSKENCVVDNIKVCSNDMGSGK 863 Query: 943 KRALEIEE---MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + I K S Q + + P Sbjct: 864 FKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSR 923 Query: 1000 LGLTD--------------------EEKQNQLEQLAEQYDELKHEFEKKLE--AKRRKIT 1037 + + ++ E + E+ + Sbjct: 924 MTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGI 983 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 G +L + V Y ++ DK R Sbjct: 984 SGMELEADIFIGVVYYQRLRH--MVSDKFQVRTT 1015 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 96/574 (16%), Positives = 174/574 (30%), Gaps = 140/574 (24%) Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + F+P++ +N + ++ ++ + + ++ +L T P V Sbjct: 669 VIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQ----TPQSPLVRP 724 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 D + A+ D++D+ + Sbjct: 725 CMYDFYDMD-------------------------NYPIGTNAIVAVISYTGYDMEDAMIV 759 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 V+ + ++ ++ + E+ + K +Q L+ Sbjct: 760 NKASWERGFAHGSVYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQKLDDDG-------- 811 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE--LKHEFEKKLEAKRRKIT 1037 +G E L E + + K+ Sbjct: 812 -----------------LPSIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENCVVDNIKV 854 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 +D+ G K + + + + R GDK A RHG KG++S++ P EDMP+ E+G DI+ Sbjct: 855 CSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDIL 914 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLK----QQQEVAKLREFIQRAYDLGA 1153 NP G PSRM IG ++E+ G +A G +A + + E ++ A Sbjct: 915 FNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFY 974 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 + GM + +F G + + Sbjct: 975 GTERLYSGI---------------SGMELEADIFIGVVYYQRLRHMVSDKFQVR------ 1013 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 TG DK VT QPLGG+ GG RFGEM Sbjct: 1014 --TTG--------------------ARDK-----------VTNQPLGGRNVQGGIRFGEM 1040 Query: 1274 EVWALEAYGAAYTLQEMLTVKSDDVNGRTKM--------------------------YKN 1307 E AL A+G ++ L + L SD + Sbjct: 1041 ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKPPPSWSAMRNRKYNCTV 1100 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + +P F + E+ ++ I ++L+ Sbjct: 1101 CGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134 Score = 92.6 bits (228), Expect = 9e-17, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 82/284 (28%), Gaps = 69/284 (24%) Query: 14 DFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS--YSGNSELQ 69 +G P+ + L +DSF GL A +++ P + L Sbjct: 23 SYGIPPEQQKAALQDLTRAHVDSFNY------AALEGLSHAVQAIPPFEFAFKDERISLT 76 Query: 70 YVSYRLGEPVF-----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 V + P EC+ R TY L + + Sbjct: 77 IVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQ---- 132 Query: 119 EQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPG 154 ++G +P+M + G F+ING E+VI + Sbjct: 133 ----FLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPRRN 188 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRR---KL 204 F + S + Y + R ++ + + + R+ L Sbjct: 189 -FPVAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFL 247 Query: 205 PATIILRAL-NYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 P L+AL +++ QI + ++ V + LR Sbjct: 248 PLGFALKALVSFSDYQIFQELIKGKE----EDSFFRNSVSQMLR 287 >UniRef50_A2SSM5 DNA-directed RNA polymerase n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SSM5_METLZ Length = 637 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 149/751 (19%), Positives = 248/751 (33%), Gaps = 147/751 (19%) Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 +V +D+ F + R G S + Y D S Sbjct: 9 FVDGALIGKVDDAYGFTRNFRQMRRSGHVSTEV--NISYKDYS----------------- 49 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV--TAVAKRGGVVQYVDASR 731 N ++ + R P + + + E V SG G ++++DA Sbjct: 50 ---NEIVINTDRGRARRPLIVVENGVPAVTPEDIEIVRSGAEDFMALVSQGKIEFIDAEE 106 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 ++ + E+ + + L PS L Sbjct: 107 E----DDLFIAVQESDLTPEH----------------------------THLEIDPSLIL 134 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 G + A +P+ +N + + ++++ + R G Sbjct: 135 G-------IGAAHVPFPEHNASPRVTMGAGMIKQALG----FAQANMKLRPDTRGHMLHY 183 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 A +P V A + + AI + Sbjct: 184 AQVPMVHTQAAELIGSD-------------------------NRPQGQNFCVAIISYEGY 218 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK----RALEIEEMQLKQAKKDLSEELQIL 967 +++D+ + V V F E+ + + IE + L Sbjct: 219 NIEDALIFNKASVERGVGRSHFFRTYEGEERRYPGGQVDRIELPEEDVQGSHGIGSYANL 278 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 + V+ V K G ++ + + + +E Sbjct: 279 DVDGIINPETVVNEKDVLIGKTSPPRFLEEPT-GELIAVEKRRDTSITMRSNETGIVDTV 337 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + + ++VKV R + GDK A RHG KGV I P E+MP+ Sbjct: 338 II-----------TESENSSRLVKVRTRDLRIPEIGDKFASRHGQKGVCGLITPQENMPF 386 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 G D+V+NP VPSRM IG +LE G A G ++NA ++ +V K+ + Sbjct: 387 TAAGIAPDLVINPHAVPSRMTIGHMLEMIGGKAGALEGSRVNATSFRKTQVEKIFDSSFA 446 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 L D D+ + + +E ++ L + Sbjct: 447 QNRLLNDKEIGKDVKSSTL-----------------------TREQVLRHQLAEAGFAHT 483 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G+ +YDG TG +F+ + +G +Y KL H+V KMHARS G ++T+QP G+A+ GG Sbjct: 484 GREVMYDGITGRRFQADIYIGVIYYQKLYHMVSTKMHARSRGPVQVLTRQPTEGRAREGG 543 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM------------YKNIVDG 1311 RFGEME + +GAA L+E L +SD V R M Sbjct: 544 LRFGEMERDVMIGHGAAMALKERLLDESDAVKQYVCARCGMVAMYDAKQKMTRCLACGAE 603 Query: 1312 NHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 E M +F +LL E++S+GI L E Sbjct: 604 TDIYEVEMSYAFKLLLDEMKSMGIAPRLRLE 634 >UniRef50_Q3ZJ93 DNA-directed RNA polymerase subunit beta n=35 Tax=cellular organisms RepID=RPOB_PSEAK Length = 2178 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 222/760 (29%), Positives = 353/760 (46%), Gaps = 77/760 (10%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 K + +P L+IQ SF++F++ GL F++ I + Sbjct: 43 SLCKQSLKAYNEKLYSPLSQFKIPDFLNIQRSSFRQFLKS------GLITEFKNCKSITN 96 Query: 62 YSGNSELQY--VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 + E+ + Y+L P + ++ ++ +YS+ L + ++L Y+ E ++ Sbjct: 97 SNQTFEVFFYAEHYKLNRPKWTPKQAILKKKSYSSQLYLPIQLSNYQTE-------EVHL 149 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 Q V + +PLMT NG F++NG RV+++Q+ RSPGV+F K + K +Y+A I Sbjct: 150 QWVLLANLPLMTKNGHFILNGCPRVLMNQIVRSPGVYF----RKVVKNQKTVYSADFIAQ 205 Query: 180 RGSWLDFEFD-PKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQ 238 RGSWL E D K +++ ++ + K+P LRAL T I + L Sbjct: 206 RGSWLRLEVDTKKGDIWAKLKKTPKIPIFTFLRALGLTLP-----ILNNSIDFAKLRYLL 260 Query: 239 MELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + + F R + +++ K + Sbjct: 261 QFKEESKRSKKIKDFLGPGINNSLDIVEFRSLLKSLKKYMKPKPAKKSSKKQKTKKIKKW 320 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + Sbjct: 321 LT------------------------------------------------PFVCTTYFQS 332 Query: 359 RLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 L ++Y + E + A+ F + YDLS +GR K N+ L Sbjct: 333 LLELCQKLYPQKKFLELDPKL-AQKFLFRKFQNPRTYDLSILGREKINKKLGISIPLEKT 391 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 IL+ D++ L+D+ G DDID L NR+I+ GE+ + Q GL+R+E+ ++E+ Sbjct: 392 ILTSQDVLFACLFLMDLLQGLVISDDIDDLKNRKIKPSGELIQTQLSTGLIRLEKIIREK 451 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL 538 L D+ ++ + KP++ A ++FFG++ LSQ MDQ N LSEITHKRR+S+LGPGG+ Sbjct: 452 LKQPKQDSDSFSNLFSVKPLNQAFRDFFGTNPLSQLMDQTNALSEITHKRRLSSLGPGGI 511 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 RE AG +R +HPTHYGR+CPIETPEG N GL+NS ++++ N F+ETP+ K+ G Sbjct: 512 NRETAGMAIRGIHPTHYGRICPIETPEGQNAGLVNSFTIFSHLNTKSFIETPFYKMYKGF 571 Query: 599 VTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDL-VTCRSKGESSLFSRDQVDYMDV 655 + + S+ +E N V+A + + + R E SR++++++ V Sbjct: 572 ILKNKNPFLFSSDQERNLVLAPGDIQTSLFHFLPPGVPIPSRQFKEFKRVSRNEINFIAV 631 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 S Q++S+ SLIPFLEH+D NRALMG+NMQRQAVPT+R KP+VGTG+E V D G Sbjct: 632 SPIQMISIATSLIPFLEHNDGNRALMGSNMQRQAVPTVRPSKPIVGTGLESRVISDVGHG 691 Query: 716 AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 ++ G V YVD ++I+I + P + K Sbjct: 692 LQVQKSGFVSYVDGNKIIIYSKKRIDQPFFFDTKKLHFPK 731 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 147/414 (35%), Positives = 214/414 (51%), Gaps = 47/414 (11%) Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 + F + L+I+ L++ + + L+ + L A L Sbjct: 1795 RIAKEMYFFNKNEKIKLSTLQIKIKGLEKKEFSFPKILKARFSLLQKAQTANLKIEKF-- 1852 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 L W + +++ Q + + + K + + + + Sbjct: 1853 -----LDDKFWNNVNYSNKNFSRNGSQKENSNADGLQFYNPLKKTKTKVLQPMEKTSFSG 1907 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 + V +YLA KR++Q GDK+AGRHGNKG+IS I P +DMPY +GTP+DIVLNPLGVPSR Sbjct: 1908 PQKVHIYLAEKRKLQIGDKIAGRHGNKGIISNILPRQDMPYLSDGTPLDIVLNPLGVPSR 1967 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQILE LGMA + + G + + + S + Sbjct: 1968 MNVGQILECLLGMAGYYLKQNFKIQPFDE--------------IYGCEASRSLVYSKLYE 2013 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 + + L + G+ RL+DGRTG+ F++PVT Sbjct: 2014 ARIKTGQD-------------------------WLFNANHPGKTRLFDGRTGDCFKQPVT 2048 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 VG Y+LKL HLVDDK+HARSTG YSLVTQQPL G+++ GGQR GEMEVWALE +GAAY Sbjct: 2049 VGVAYILKLIHLVDDKIHARSTGPYSLVTQQPLRGRSKQGGQRVGEMEVWALEGFGAAYI 2108 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 LQE+LT+KSDD+ GR ++ +I++ G+PESF VL++E++SL ++I + Sbjct: 2109 LQEILTIKSDDLKGRNQVMNSILNNKPV-NFGLPESFKVLVRELQSLCLDIAIY 2161 >UniRef50_A8NYQ6 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NYQ6_COPC7 Length = 1127 Score = 438 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 144/1139 (12%), Positives = 301/1139 (26%), Gaps = 275/1139 (24%) Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDIE 256 RR P+ N T +L E + +R + I Sbjct: 122 ERRVFPSE--SVRCNLRTLSSAELVQRHEEPEEFGGYFVINGNERLIRYLILPRRNHVIS 179 Query: 257 ANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 + +G T A IR + D + G + + + + Sbjct: 180 LIRPSFSNRGPSYTQYAVQIRCVRPDQTSVTNTLHYLANGSAMFRFTWRKQEYVIPIMLI 239 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE 374 ++ ++ K G + T D + + ++ + L + R Sbjct: 240 LKALVNASDKEIFEGVVMQDYDNTFLTDRVELLLRSFKMYTMHTGEQCLEYLGDKFR--- 296 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 + + + +A+G + +L + ++ +++K+ Sbjct: 297 ------------VVLNLPEDWTNAAIGAWLIQKLVLVH--LETPRDKFRMLLYMLRKMYS 342 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL----------GDL 484 + +G+ D+ D ++ + G + + + + A++ +++ D Sbjct: 343 LISGECCADNPDSPQHQEVLLPGSLYGMIIKERMEEILNAIRATIAMDVRTGANVDFHDK 402 Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRI 530 I + + F + L + ++ N I+H R Sbjct: 403 KYFAKVLTKVNFDIGSKMSNFLATGNLVSPTGLDLQQASGFTIVAEKLNWQRYISHFR-- 460 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 + G E VR + P + + N L+ + + Sbjct: 461 -CIHRGAFFAELKTTTVRKLLPEAW------------VAHIPNLLAAHG-------MTQS 500 Query: 591 YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 + DG ++ VI A + +L +++G+ + ++ Sbjct: 501 FATSIDGRKNL------CVQLDGRVIGWARPVV--AAQLATNLRIWKTEGKYEVPLDLEI 552 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 +P + + R P + G + + Sbjct: 553 ---------------GFVPESHGGQYPGLFLFSTKARFMRPVKY-----LANGKDDQIGS 592 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 V P E + ++ +N + + M Sbjct: 593 FEQV---------------------YMNIACTPEEIEEGVSTHVEHDPTNFLSILANM-- 629 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 P++ +N + ++ T Sbjct: 630 ----------------------------------TPFSDFNQ---------MGKQTMGTP 646 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 + ++ +L T P V + + Sbjct: 647 ATAIQHRTDNKLYRLQ----TGQSPIVRPSLHNTYGMDAFP------------------- 683 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 + A+ D++D+ + + ++ ++ + + Sbjct: 684 ------NGTNAVVAVISYTGYDMEDAMILNKSAHERGFTYGTIYKSQIIDLKEVRGASKS 737 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 F + + G + + +D G+ + Sbjct: 738 SSTPTLH--------------FGIAGDIRLTGDNAHPCAEFVDKDGLPFPGVRVKPGDPL 783 Query: 1011 LEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 + + + + + G D L+ V V L + R GDK + Sbjct: 784 AAYIDDTTGRTRFVKYKGDETAYVDQVRLLGSDAGDSELQKVHVTLRIPRAPVIGDKFSS 843 Query: 1069 RHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKI 1128 RHG KGV S+ P DMP+ E+G D+++NP H + IG + Sbjct: 844 RHGQKGVCSQKWPAIDMPFSESGIQPDVIINP---------------HAFPSRMTIGMLV 888 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 +M A GA D + F E + Sbjct: 889 ESM----------------AGKAGAMHGLAQDATPFKFTE-------------------E 913 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 + L G +Y G TG++F + G +Y +L H+V DK Sbjct: 914 DTAIDYFGKQLLAAGYNYYGNEPMYSGITGQEFAADIYFGVVYYQRLRHMVLDKFQ---- 969 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN 1307 G+ + GG RFGEME AL A+G ++ LQ+ L SD Sbjct: 970 ------------GRKRAGGIRFGEMERDALIAHGTSFLLQDRLMNCSDYSTAWVCRTCG 1016 Score = 84.9 bits (208), Expect = 2e-14, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 89/285 (31%), Gaps = 52/285 (18%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPY-LLSIQLDSFQK-FIEQDPEGQYG-----LEAAFR 54 + ++ K+ K + ++ ++SF F + G L A + Sbjct: 13 TFDTLSRENAFKNPPKNGSTYKILNEFVAPHIESFNALFDDSGLPSGDGDGRGLLSLALK 72 Query: 55 SVFPIQSYSGN---------------SELQYVSYRLGEPVFDVQE--CQIRGVTYSAPLR 97 + ++ G + + P+ ++ + R V S +R Sbjct: 73 DIGERVAFDGRGADPESWGNRMRTNWLAVWIEQVTIARPMVSDRDRTARERRVFPSESVR 132 Query: 98 VKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF 157 LR + V+ +E E + G FVING ER+I + Sbjct: 133 CNLR-----TLSSAELVQRHEEPEEFGG---------YFVINGNERLIRYLILPRRNHVI 178 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRRK---LPAT 207 + S+ Y + R D + + R R++ +P Sbjct: 179 SL-IRPSFSNRGPSYTQYAVQIRCVRPDQTSVTNTLHYLANGSAMFRFTWRKQEYVIPIM 237 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 +IL+AL ++ FE V+ + DN + V LR Sbjct: 238 LILKALVNASD---KEIFEGVVMQDYDNTFLTDRVELLLRSFKMY 279 Score = 46.8 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G +P F L E+ S+GI + LE + Sbjct: 1095 KGGDLDVVAVPYVFRYLCAELASMGIAVSLEVK 1127 >UniRef50_A9BKT9 DNA-directed RNA polymerase n=1 Tax=Cryptophyta RepID=A9BKT9_9CRYP Length = 1129 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 166/1276 (13%), Positives = 340/1276 (26%), Gaps = 255/1276 (19%) Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSD----KGKTHSSGKVLYNARIIPYRGSWLDF-- 186 + +I +++ G+ K K I Y G +L Sbjct: 37 SNNILIQDKLKILRHFTLEIFGIHLSLPNFFLKNKKIKKIPRQCRELKINYSGDFLLGIS 96 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 K F I + +P + N ++ L Sbjct: 97 SVFGKHGKFSFIYKIGNIPIMVKSLKCNLYQQKKKQLIEMDEEEIEMGG----------- 145 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 F I K+ + + T Sbjct: 146 -----YFIINGMEKMIRLLIVPKKNISFTLSRLTNTSRGNLCTTLSCSFRSVDRLQTSRT 200 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS---AL 363 L N + ++ + + I + + I E+L + D+ + Sbjct: 201 LHLHYLTNGSIHARIIVQKKEFFIPVIMLIKSLMPISDKKIFESLTKTFSKDKFYRIRIM 260 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSE---DRYDLSAVGRMKFNRSLLREEIEGSGIL 420 I + T+ + +F + + D ++G +L E Sbjct: 261 AMIKDAHETCDLKTQISVLEFLGKVFKTSLQTNTIDAKSIGEKFLFNHILIHLGEDKE-A 319 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV--KER 478 ++ ++ KL+ ++ D+ D L ++ G + F+ + ++ Sbjct: 320 KVKLLLFMINKLLSVQKKISIEDNPDSLSSQEFLLPGHLIMVYFKEKFESSLNFIFSQKE 379 Query: 479 LSLGDLDTLMP--------------------------QDMINAKPISAAVKEFFGSSQLS 512 + Q + +S E +S LS Sbjct: 380 FEQNISNNFNKEGKSFQKQFCTDFLSKAFMTTGKGLAQIISTGSYVSKFNHELSQTSGLS 439 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 +++ N +++ R ++ G E R + P +G +CP+ TP+G G++ Sbjct: 440 VSIERINFGRFLSYFR---SIHRGKFFFELKNTSGRKLLPQSWGFLCPVHTPDGALCGIL 496 Query: 573 NSLSVYAQTNEYGFLETPYRK------VTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEE 626 N + + L + K + + ++ S ++ Sbjct: 497 NHTASSVLVSLSNPLNCDFFKKYFFRYLPKNFLKEKKISSSIFMIDGKILGF--IPKFFF 554 Query: 627 GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQ 686 FV+ L T + + ++ S+ F ++ + Sbjct: 555 KSFVDKLRTEKVSVLGKISLGCEIF--------------SISRFNRKCSFPSCILLSQDG 600 Query: 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEA 746 R P + + Y I+ + + Sbjct: 601 RPLRPVKWFSFKKKKKFSVFKKKNEKD---------FLNYCSEIEIIGTLEQC------- 644 Query: 747 GIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 + + V +E ++L+ + P Sbjct: 645 ------FLNIDNLDYQSSFFTKNMVGTHSEIEASNILS---------------VIAGATP 683 Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 ++ N + ++ ++ T RD + +P + Sbjct: 684 FSDLNQSPRNMYQCQMSKQSVGTPF----YTFWRRDDIKSFFLLNPQVPICRNKIIQ--- 736 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 G+ + ++ D++D+ + + + Sbjct: 737 -DGLQM--------------------DAFPNGFNSVVSVITYTGFDMEDAMIINKSSIER 775 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 V+ ++ L+ K+ VL G + Sbjct: 776 GFASSNVYNCFDLDIKPSLLKKSNFFKKKKT-----------------EENVLKTGDLLK 818 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + +P++ W + + +K + KI D Sbjct: 819 KGAPLVPKESW-------------YSIHKKNEAFFCYNSSEKAIIDQIKI-FSDIENNQN 864 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 ++ + + +RR GDK A RHG KGV S + D+P+ + G +I+ NP G PSR Sbjct: 865 IEKNSIKIRSRRRPLVGDKFASRHGQKGVFSYLYSSIDLPFTDLGMNPEIIFNPHGFPSR 924 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQ----QQEVAKLREFIQRAYDLGADVRQKVDLS 1162 M IG ILE+ +G G + + + + E ++++ Sbjct: 925 MTIGVILESMIGKIGALDGVFHDTTPFRFGQNRAAIYHFGEKLRKSGFQFYGNEIFYSG- 983 Query: 1163 TFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFE 1222 Y G E F Sbjct: 984 --------------------------------------------------YSG---EPFS 990 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 V +G + +L H+V DK + G + +T+QP+ GK G RFGEME A+ G Sbjct: 991 IDVFLGIVNYQRLRHMVLDKYQISNQGPKNSLTRQPIKGKKIGGSIRFGEMERDAILGQG 1050 Query: 1283 AAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQM-------------------EPGMPESF 1323 + L + L SD R + K + + + +P Sbjct: 1051 CVFLLHDRLQTSSDLHASRLNIEKGSFFDSEKPTSHTFFYKKKFFEKKVINRKILLPYVI 1110 Query: 1324 NVLLKEIRSLGINIEL 1339 LL E+ S+ + I Sbjct: 1111 KFLLIELASINLKINF 1126 Score = 70.3 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 49/412 (11%), Positives = 113/412 (27%), Gaps = 58/412 (14%) Query: 24 VPYLLSIQLDSFQ------KFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGE 77 + L I +DSF F + ++ + + L ++ L Sbjct: 11 LQSLTRIHIDSFNFAISQGFFFLKFFSNNILIQDKLKILRHFTLEIFGIHLSLPNFFLKN 70 Query: 78 PVFD--VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN-- 133 ++C+ + YS + + V + K +G IP+M + Sbjct: 71 KKIKKIPRQCRELKINYSGDFLLGISSVFGKHGKFSFIYK--------IGNIPIMVKSLK 122 Query: 134 ----------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV- 170 G F+ING E++I + + F + S G + Sbjct: 123 CNLYQQKKKQLIEMDEEEIEMGGYFIINGMEKMIRLLIVPKKNISFTLSRLTNTSRGNLC 182 Query: 171 -----LYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK---LPATIILRALNYTTEQILD 222 + + L + ++ RI ++K +P +++++L Sbjct: 183 TTLSCSFRSVDRLQTSRTLHLHYLTNGSIHARIIVQKKEFFIPVIMLIKSL---MPISDK 239 Query: 223 LFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDV 282 FE + +K + ++ + D++ V G+ Sbjct: 240 KIFESLTKTFSKDKFYRIRIMAMIKDAHETCDLKTQISVLEFLGKVFKTSLQTNTIDAKS 299 Query: 283 KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK-RIETLFTNDL 341 + +I + + + L+ N LS+ + + + Sbjct: 300 IGEKFLFNHIL--IHLGEDKEAKVKLLLFMINKLLSVQKKISIEDNPDSLSSQEFLLPGH 357 Query: 342 DHGPYISETLRV--DPTNDRLSALVEIYRMM-RPGEPPTREAAESLFENLFF 390 Y E + + I + G+ ++ F Sbjct: 358 LIMVYFKEKFESSLNFIFSQKEFEQNISNNFNKEGKSFQKQFCTDFLSKAFM 409 >UniRef50_C0JWJ9 DNA-directed RNA polymerase n=1 Tax=Monomastix sp. OKE-1 RepID=C0JWJ9_MONSK Length = 2108 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 280/988 (28%), Positives = 402/988 (40%), Gaps = 221/988 (22%) Query: 566 GPNIGLINSLSVYAQTNEYG--------FLETPYRKVTDGVVT-DEIHYLSAIEEGNYVI 616 G IGL + A + G ++ K D I S+ E + Sbjct: 1006 GKEIGLSSFQMNKANPRKNGGGSEKLYSLEQSSLLKADDSFAVRQNISLFSSELEDEIYV 1065 Query: 617 AQANS---------NLDEEGHFVEDLVTCRSKGESSLFSRDQ---------VDYMDVSTQ 658 ++ + + R K E + + + Sbjct: 1066 CTGDTLNPCLLNTSKIVANTSLFPPVFPVRHKQEFLTINSTDALQFIQAPTKLFTGICPI 1125 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP + +K VGTG+E A DS +A Sbjct: 1126 QLISIATSLIPFLEHDDANRALMGSNMQRQAVPFMTPEKAFVGTGLELQAARDSSTLVLA 1185 Query: 719 KRGGVVQYVDASRIVIKVN-----------------------------------EDEMYP 743 G + +VD+ I +K E P Sbjct: 1186 DESGQILFVDSQSIKLKTEKHGRTFSELRSPPGTKGQRPQWGKLSLDLKDQSAHPIEFSP 1245 Query: 744 GEAG----IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 G I Y LT +T SNQ+TC+ Q P V +GE VE+G +LADG T GE+ALG+N Sbjct: 1246 ERGGFSKEISSYELTDFTPSNQSTCLKQRPAVEIGEWVEKGSLLADGSGTRDGEVALGKN 1305 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP------------ 847 + +A+MPW GYNFED+I+++ER+V ED +T++H++ R+TK+ Sbjct: 1306 VLLAYMPWEGYNFEDAIVINERLVFEDIYTSVHVERFDVDVRNTKIIQVRNPENSFQLED 1365 Query: 848 -----------------EEITADIPNVGEAALSK-------------------------- 864 E +T D+ V Sbjct: 1366 TLPENSILNIFRSLVPGEYLTRDLDIVTNKTSRNSGNENSTLKTSTKDSLEALESINLPP 1425 Query: 865 --------LDESGIVYIGAEVTGGDILVGKVTPKGETQLT-------------------- 896 LD +GI+ G V GDIL+GK+ + L Sbjct: 1426 KLPPKLRHLDANGIIKPGTWVQEGDILLGKLQIGPKDNLNNFDIKAQNTPFAQKIQTLPF 1485 Query: 897 PEEKLLRAIFGEKASDV---------------------------KDSSLRVPNGVSGTVI 929 PE +LL AIF + K+S+L +I Sbjct: 1486 PEYRLLLAIFDLQNRTPDKTLPTQTSNLEGGKLWPTTFGEKLSEKESTLPSSQDKKEQII 1545 Query: 930 DVQVFTRDGVEKDK------RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 983 + + + E+ + + L +L A S Sbjct: 1546 GEKSLSSEEGERSPLSDLSAYKNTLPSQNFGSELTSGQDTLNLLAAEKSSNSGLFAHQIK 1605 Query: 984 VEAEKLDKLPRDRWLELGLTDE----EKQNQLEQLAEQYDEL--------------KHEF 1025 + K+ + R L+ + + + + Q + Sbjct: 1606 NTSFKVGIGVKGRVLDYVVDGRISIFDGRQKANQNLPPRGSRETPPGLWPSQREEREGRG 1665 Query: 1026 EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 + ++ K G+ V ++LA K+RIQ GDKM+GRHGNKG++S I P +DM Sbjct: 1666 GRTPFLEKHKTLIGEGFIQSAATSVSIFLAHKKRIQLGDKMSGRHGNKGIVSLILPPQDM 1725 Query: 1086 PYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFI 1145 PY ++G PVD+VLNPLGVPSRMN+GQ+LET G++A M ++ +A + Sbjct: 1726 PYLQDGKPVDVVLNPLGVPSRMNVGQVLETLFGLSAFYSHKVYRIMPFDER-IAPSQSIE 1784 Query: 1146 QRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP------------IATPVFDGAKEA 1193 + A + ++ S + G+P Sbjct: 1785 KNTLQENASLSLSRPETSRSLVYGHLRKLKTKAGVPPKRAEISELGLQKGGYPRTLKSIK 1844 Query: 1194 EIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSL 1253 + +L L D G+ L+DGRTGE F +P VGY YM KL HLVDDK+HARSTG YSL Sbjct: 1845 KGSQLNWLFDPNNPGKTHLFDGRTGEIFYQPALVGYSYMFKLIHLVDDKIHARSTGPYSL 1904 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGN- 1312 VTQQPLGG+++ GGQR GEMEVWALE +G A LQE LTVKSD++ R +++ N Sbjct: 1905 VTQQPLGGRSKKGGQRLGEMEVWALEGFGTASILQEFLTVKSDEIYSRNNFLFHLMRRNW 1964 Query: 1313 HQMEPGMPESF-------NVLLKEIRSL 1333 +E ESF V +E+RSL Sbjct: 1965 ESLEKNENESFARDAIKARVAGEELRSL 1992 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 213/1115 (19%), Positives = 390/1115 (34%), Gaps = 239/1115 (21%) Query: 102 LVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 + + E K I Y G+IPLMT+ G+F+ING RV+V+Q+ R P V+F Sbjct: 350 MTNHFVERSTRQKKQIF--WFYFGDIPLMTERGSFIINGAPRVLVNQIIRCPSVYFKVKL 407 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDP-KDNLFVRIDRRRKLPATIILRALNY----T 216 + + Y A + GSWL E D + L+ RID+ + PA I+L L Y Sbjct: 408 DQK---NRRSYTASFLSEYGSWLRLETDRLSNRLWARIDKSPRFPADILLMGLGYVLDSE 464 Query: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERLRGETA----SFDIEANGKV------YVEKG 266 + K F++ L + + + F+ + + Sbjct: 465 NLNSVKYGLSKNEFKLNAQTLSFGKENKVVINKNIVKNSIFETASTLNSTFPASPFTSLK 524 Query: 267 RRITARHIRQLEKDDV---------------------------------KLIEVPVEYIA 293 + +TA++I+ ++++ K + ++ A Sbjct: 525 KYLTAKYIQVYQENNNLPTRQHDEREVQRPPRNGGEGSVGRTPFLDWIGKGLSKGLQSTA 584 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE---------TLFTNDLDHG 344 G+ +++ + I L + A+L++ I+ Sbjct: 585 GEKQFAKLLNKVENKKISKEQNYLWSSVSARLAEPKISSIQSPRPVLSGSIGKKFSSTKN 644 Query: 345 PYISETLRVDPTNDRLS---------------ALVEIYRMMRPGEPPTREAAESLFENLF 389 T+ D T AL +++ PG + S F N F Sbjct: 645 FVFKNTVENDNTRTPRRTNAGSKSGITINTATALQALWKKCNPGRWTSALGCYSFFYNKF 704 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV------- 442 + RY + VGR++ N+ L R L+ +D++ L +++ + Sbjct: 705 LNPKRYSIGRVGRIRLNKRLRRNPECKIPTLTPEDVLLAFHYLTELKIADAKENTFSLEL 764 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRV----------ERAVKERLSLGDLDTLMPQDM 492 DDIDHL NRR+R GE+ +NQFR+ L R+ + ++ + PQ + Sbjct: 765 DDIDHLKNRRVRLPGEILQNQFRLALSRIPYSAIRLQDNKTNIRNEVLQQREKVQRPQGV 824 Query: 493 -------------------INAKPI-----------------------SAAVKEFFGSSQ 510 N I + ++E F + Q Sbjct: 825 PLEGRVGRSPPSGEAKKVEQNQNSIRKNFDSVSSSRSEDSVPPGIPAFQSTLRELFNTGQ 884 Query: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 LSQ+MDQ NPL+EITHKRR+S+LGPGG+ R++AGF VR++HP+H+GR+CPIETPEG N G Sbjct: 885 LSQYMDQTNPLAEITHKRRLSSLGPGGVGRDQAGFAVREIHPSHFGRICPIETPEGQNAG 944 Query: 571 LINSLSVYAQTNEYGFLETPYRKVTDGVVTDE----------IHYLSAIEEGNYVIAQAN 620 L+ SL+ YA+ N+ GFL++P + + + + SA + + I Q N Sbjct: 945 LVGSLASYARINDDGFLQSPALPIENQKSRFPFNNNNFEGDWLGFNSASRKYSKYILQ-N 1003 Query: 621 SNLDEEG---------------------------HFVEDLVTCRSKGESSLFSRDQVDYM 653 E G ++ + + SLFS + D + Sbjct: 1004 GPGKEIGLSSFQMNKANPRKNGGGSEKLYSLEQSSLLKADDSFAVRQNISLFSSELEDEI 1063 Query: 654 DVSTQQVVSVG----------ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 V T ++ SL P + + + N K G Sbjct: 1064 YVCTGDTLNPCLLNTSKIVANTSLFPPVFPVRHKQEFLTINSTDALQFIQAPTKLFTGIC 1123 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 + ++ ++ +++ + M Sbjct: 1124 ---------PIQLISIATSLIPFLEHDDANRALMGSNMQRQAVPFMT------------- 1161 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE-RV 822 + V G ++ A ST + GQ + V + SE R Sbjct: 1162 --PEKAFVGTGLELQA----ARDSSTLVLADESGQILFVDSQSIKLKTEKHGRTFSELRS 1215 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADI-------------PNVGEAALSKLDESG 869 + +L+ +D P E + + + L + Sbjct: 1216 PPGTKGQRPQWGKLSLDLKDQSAHPIEFSPERGGFSKEISSYELTDFTPSNQSTCLKQRP 1275 Query: 870 IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVI 929 V IG V G L+ + + ++ + +L A + + +D+ + ++ ++ Sbjct: 1276 AVEIGEWVEKGS-LLADGSGTRDGEVALGKNVLLAYMPWEGYNFEDAIV-----INERLV 1329 Query: 930 DVQVFTRDGVEKDKRALEIEE-MQLKQAKKDLSEELQILEAGLFSRIRAVLVAG------ 982 ++T VE+ + + +Q++ + E + E + + R+++ Sbjct: 1330 FEDIYTSVHVERFDVDVRNTKIIQVRNPENSFQLEDTLPENSILNIFRSLVPGEYLTRDL 1389 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 + K + + L + ++ LE + Sbjct: 1390 DIVTNKTSRNSGNENSTLKTSTKDSLEALESINLP 1424 >UniRef50_A2EN74 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis RepID=A2EN74_TRIVA Length = 1104 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 166/1179 (14%), Positives = 316/1179 (26%), Gaps = 241/1179 (20%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + + + LR + V+ Sbjct: 113 IPVMVNSDLCHLKGLTPQEKGALMEEPTEAGGYFIYSGYEKLLRLL----ILNRQNYVFA 168 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 +R P Y + ++ + L Sbjct: 169 LNRPSFHSRGPTFTNFATSFRSMAPDCSS--ITTNVHYQNTGNMVVLIPIQRRMFFVPLP 226 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND-RLSALVEIYRMMRPGEPPTREAAE 382 L L I E++ + ++ R + TR A Sbjct: 227 IL----------LRALVEVDDRTIYESICGQNPDSFYSDRVIATLRYASELDIHTRAGAR 276 Query: 383 SLFENLFFS----EDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG 438 F + + + R+L + + D +I + ++L+ + G Sbjct: 277 DFLGAHFRTVLQCPRHFTNEECCEVLLKRNLFPHLSDEAPSKKFDLLIYMTRRLLQLVKG 336 Query: 439 KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK------ERLSLGDLDTLMPQDM 492 + D++D + + G + + +A E+ ++ D D L Sbjct: 337 EILPDNMDANSAHELLTPGTLWLPALSDAITDFLKATAANVYKDEKNAIDDFDALQTILK 396 Query: 493 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 NA + ++ F + L + N ++ +S + ER Sbjct: 397 KNASGVENRMRYLFSTGSL-----RGNSTLGLSQTEGLSII------AERIN-------- 437 Query: 553 THYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG 612 C L+ + + F T ++ + ++ Sbjct: 438 -----YC-------------RYLAHFRSVHRGAFFTTMKTTAVRYLLPESWGFMCP---- 475 Query: 613 NYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 +G L E + Q+ + ++PFL Sbjct: 476 ---------VHTPDGGLCGLLTHLARFCEIVTGDSQGFKEI----VQIFTNYG-MVPFLG 521 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 D VP + D +VG+ ER + A+R G++ Sbjct: 522 SGDM-------------VPVI-VDGRVVGSIRERLSSAAVEALKTARRKGIIPK------ 561 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 ++ G IY R + + P+E + D S Sbjct: 562 --MAEIADLPAGSFTRSIYVFLNQQRMMRPVFNVKAQEQEYAGPLE--QIFMDIASNPKD 617 Query: 793 ELALGQNM--------RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK 844 E + + + P++ YN + ++ ++ H + + + Sbjct: 618 ESKAYREIHHTAMLSLIASLTPFSDYNQSPRNMYQCQMAKQTMGYPSHREAASTEVKT-- 675 Query: 845 LGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 904 P V A Sbjct: 676 --YHVHYPQRPIVRTMEQD-------------------------SHALEDFLLGTNACVA 708 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEEL 964 + D++D+ L V ++ ++ KD Sbjct: 709 VLSYTGYDMEDALLINKCSVERGFGHGCIYKTHRYTAEEIESNSYFCN----TKDGVIVD 764 Query: 965 QILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE 1024 L+A + + G + L + E K+ + + + Sbjct: 765 PDLDADGLPFVGQRVSKG------------CKLLRVYNPKENKERIMSYKDGEDGFVDKV 812 Query: 1025 FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 + +R ++ V + + R GDK + RHG KGV S P E+ Sbjct: 813 ITTTSDDGKRVLS------------VVLKFRMVRTPTIGDKFSSRHGQKGVFSFPWPQEN 860 Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MP+ ENG D+++NP PSR IG I +M + + Sbjct: 861 MPFCENGITPDVIINPHAFPSR---------------MTIGMLIESMCGKLRASQDCA-- 903 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 D + F+ +E E+ ++L Sbjct: 904 -------------FFDATPFTHDE-------------------KNRITDEVGQMLAKEGF 931 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 G +Y G TGEQF+ + +G +Y +L H+V DK R+TG + +T+QPL G+ + Sbjct: 932 EYYGNEAMYSGITGEQFKADIFMGVVYYQRLRHMVGDKYQVRATGKMNNITRQPLKGRKK 991 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV----NGRTK----------------- 1303 GG R GEME L A G + L++ SD R Sbjct: 992 GGGIRLGEMERDGLLAQGVTFLLRDRFMWCSDGHVAKLCNRCGSFMFTQTKHDENGVEET 1051 Query: 1304 MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +P L E ++ I ++ E Sbjct: 1052 YCTYCKKSGNCTSVYVPYVLRYLCAEFAAMNIRMKFSTE 1090 Score = 62.2 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 73/238 (30%), Gaps = 57/238 (23%) Query: 19 PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAA---FRSVFPIQSYSGNS-ELQYVSYR 74 Q D+ + LS L+SF GL+ F + Sbjct: 9 EQYKDLCHFLSPHLESFNW------AVNTGLQKIPEWIPEQFVKRDGDDRILHFHVKELT 62 Query: 75 LGEP------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIP 128 L +P C++ G TY L + L I + K+ V IP Sbjct: 63 LTKPYDARGNKIYPYMCRLGGQTYGGSLNIILEAAINDLPP--------KKFSVVANNIP 114 Query: 129 LMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFD------ 158 +M ++ G F+ +G E+++ + F Sbjct: 115 VMVNSDLCHLKGLTPQEKGALMEEPTEAGGYFIYSGYEKLLRLLILNRQNYVFALNRPSF 174 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL---PATIILRAL 213 +G T ++ + + + + N+ V I +R++ P I+LRAL Sbjct: 175 HSRGPTFTNFATSFRSMAPDCSSITTNVHYQNTGNMVVLIPIQRRMFFVPLPILLRAL 232 >UniRef50_Q2I5U5 DNA-directed RNA polymerase (Fragment) n=2 Tax=Eukaryota RepID=Q2I5U5_BATDE Length = 1202 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 115/723 (15%), Positives = 204/723 (28%), Gaps = 140/723 (19%) Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 CP ETPEG GL+ +LS+ G P + + + + +S Sbjct: 609 CPAETPEGQACGLVKNLSLMGYITV-GSPAPPILEFLEEWTMESLEEISPSTIPTATKIF 667 Query: 619 ANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD 674 N V L R + S V + ++ + + L Sbjct: 668 LNGQWVGIHRDPDQLVSTLRRLRRSVDVSPEVSV-VRDVRDRELRLCTDAGRIARSLFVV 726 Query: 675 DANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV- 733 ++L+ Q + D GVV+Y+D Sbjct: 727 TPEQSLVLTKEMVQ------------------QLHEDQIQWKDLLSYGVVEYIDTEEEET 768 Query: 734 --IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 I + D++ + R T + V PS L Sbjct: 769 VMICMTPDDLAEARMAAAGQVV---ERHQVGTGRLKSATVYT----RNYTHCEIHPSMIL 821 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 G + + +P+ +N + + ++ + R + Sbjct: 822 G-------ICASIIPFPDHNQSPRSVYQSAMGKQAMGLFL----TNFQLRMDTMSNILFY 870 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 P A+ L + AI Sbjct: 871 PQKPLATTRAMEF-------------------------MHFRDLPAGINAVVAIACYSGY 905 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGV-EKDKRALEIEEMQLKQAK---KDLSEELQIL 967 + +DS + + + + + EK + E ++ + + L Sbjct: 906 NQEDSLIMNQSSIDRGLFRSLYYRVYMDQEKKVGMISTETLEKPSRDTTLRLKHGTYEKL 965 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 E + + K + D E + ++ + + Sbjct: 966 EDDGLIAPGVRVSGEDIIIGKTVPIAADST--------ELGQRTTMHTKRDASTPLKSTE 1017 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + IT D K VKV + R GDK A RHG KG + EDMP+ Sbjct: 1018 NGIVDQVLITTNQD----GFKFVKVRVRSIRIPHMGDKFASRHGQKGTVGITYRTEDMPF 1073 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 +G D+++NP +PSRM IG ++E L + GD+ +A V + + +Q Sbjct: 1074 TADGITPDLIINPHAIPSRMTIGHLVECLLSKVSTFTGDEGDATPFTDVTVEAISQALQG 1133 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + G + V Sbjct: 1134 YGYQRRGFEVLYNG---------------HTGRKLNAQV--------------------- 1157 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G Y +L H+VDDK+H+R+ G ++T+QP+ G+++ GG Sbjct: 1158 ------------------YTGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGG 1199 Query: 1268 QRF 1270 RF Sbjct: 1200 LRF 1202 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 30/196 (15%) Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGS 508 +R+ G + FR+ ++ + V L + + + I+ K + Sbjct: 2 KRLDLAGPLLGGLFRMLFRKLTKDVSRYLQITMESGREFNLSLAVKSSTITNGPKYSLAT 61 Query: 509 SQL-------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 SQ +++ S ++H RR++ + R+ + R +H TH+ Sbjct: 62 GNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRLNT----PIGRDGKLAKPRQLHNTHW 117 Query: 556 GRVCPIETPE-----GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIE 610 G VC E G ++ L+ L A + HY + Sbjct: 118 GMVCLSGDTEVVLGNGMDVVLLTDLVDGACVSTIEPRTGVVSPSLID------HYFAKDA 171 Query: 611 EGNYVIAQANSNLDEE 626 I + + + Sbjct: 172 TRVLKITLDDGRVIKA 187 >UniRef50_A7SSE2 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis RepID=A7SSE2_NEMVE Length = 913 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 96/830 (11%), Positives = 227/830 (27%), Gaps = 131/830 (15%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P + + +L + + + + + +R I + Sbjct: 93 IPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRM-----LILPRRNYPL 147 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 R + V++ V + A + D + I + ++ Sbjct: 148 AIIRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVF 207 Query: 324 KLSQSGHKRIETLFTNDLDHGP----------YISETLRVDPTNDRLSALVEIYRMMRPG 373 L + + ++ + + T + + ++ S L I R Sbjct: 208 ILKALMNVTDQHIYRELIKAEENNTFWKDCVAMMLRTAQEEGAVNQKSVLEYIGLRFR-- 265 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 D + AV + + + + + +I + +KL Sbjct: 266 -------------VKMRLPDWFSDEAVAQYLIQQCICIH--LDTNADKFNLLILMTRKLY 310 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI 493 + K + D N+ + G + ++ + Sbjct: 311 ALALEKCCAESADSPMNQEVLLGGHLYLMVLKMEY----------------------FLA 348 Query: 494 NAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 IS + S + D+ N ++H R + G + VR + P Sbjct: 349 TGNLISKSGLALQQISGFTVVADRLNYFRFLSHFR---CIHRGAFFSQMRTTSVRKLLPE 405 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGN 613 +G +CP+ TP+G GL+N L+ Q L ++ + + + N Sbjct: 406 AWGFLCPVHTPDGAPCGLLNHLAAGCQVVNVVPLVAHMLRLLCTMGMIPVDAPVPGDYKN 465 Query: 614 YVIAQANSNLDE------EGHFVEDLVTCRSKGESSLFSRDQVDYMDV-------STQQV 660 Y + + L + GE + ++ + + + Sbjct: 466 YYPVVMDGRVLGSVDRDLAPTLANRLRIMKVLGEERVPQFLEICLVPITKVASQYPGLFI 525 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPL---VGTGMERAVAVDSGVTAV 717 S A ++ + + N+ M + ++ + + L V T ME + Sbjct: 526 FSSPARMMRPVLNLAVNKIEMIGSFEQVYMDIAIVQEELHEGVTTHMELK-----PTAML 580 Query: 718 AKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPV 777 + + Y D ++ + + +M G ++ R++ Q P L P Sbjct: 581 SAIASMTPYSDFNQSPRNMYQCQMGKQTMGTPVHAFQ--HRTDNKLYRIQTPQSPLVRPA 638 Query: 778 ERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELA 837 + D E LG N VA + + GY+ ED++++++ + + Sbjct: 639 SHDFYIMD-------EYPLGTNAIVAVISYTGYDMEDAMVLNKASYERGFAHGSIYKAQF 691 Query: 838 CVSR---DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894 + + +LD G +GA ++ GD + Sbjct: 692 VNLEPKSQDRTSSSNLQFGTLPDDPRIDGRLDADGFPPLGAHLSTGDPYYSYIDT----- 746 Query: 895 LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954 + ++ ++ + + +ID + Sbjct: 747 -----------------NTGEAVVKKYSNLEAGIID-------------------DRNPI 770 Query: 955 QAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 K S Q + + + + P + + Sbjct: 771 IGDKFSSRHGQKGICSQKWPVENMPFSESGMTPDIIFNPHGFPSRMTIGM 820 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 80/279 (28%), Gaps = 84/279 (30%) Query: 6 TEKKRIRKDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 + K K++G+ + L+ ++SF +E+ Sbjct: 14 SLKNLTLKNYGRLSDTQKQSIQDLVRPHIESFNFMLEEGLPLA----------------- 56 Query: 64 GNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY 123 +C+ +G TY + L+V L+ I T Sbjct: 57 -------------------AQCREKGSTYCSKLQVTLQWKIDNVPQGSVTK--------V 89 Query: 124 MGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPGVFFDS 159 + IPLM + G F++NG E++I + + + Sbjct: 90 IAAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRN-YPLA 148 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRR---KLPATII 209 + Y + R D + N+ + I R+ +P I Sbjct: 149 IIRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVFI 208 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 L+AL + ++I +N + V LR Sbjct: 209 LKAL---MNVTDQHIYRELIKAEENNTFWKDCVAMMLRT 244 >UniRef50_C5LHP3 DNA-directed RNA polymerase n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LHP3_9ALVE Length = 993 Score = 410 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 110/870 (12%), Positives = 232/870 (26%), Gaps = 121/870 (13%) Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 V T + + + + + + + ++ + + + Sbjct: 209 NLTYSSPVYVNVTQTTYALADPDDPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQT 268 Query: 316 ELSL-----DLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMM 370 E L + + E + + + MM Sbjct: 269 ERGLVEMGECVFDQGGYFIINGSEKVLIAMERMANNFVYCFQKKQPAKYTWICXXLLDMM 328 Query: 371 RPGEPPTREAAES-------LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 G P + + + Y+ A ++ + Sbjct: 329 PRGRLPWTSSLKEGQPLGHRRVVVYTGLPNVYNRYAKELLQKELLPHLGVKQYCEPRKAY 388 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG- 482 I ++ +L+ + G+ DD DH G +R+ G + F ++ + K L Sbjct: 389 FIGYMVHRLLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKRILQRQV 448 Query: 483 -DLDTLMPQDMINA-KPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHK 527 I + I+ ++ + SQ +++ +S ++H Sbjct: 449 DSGRHFDLNSAIRSASSITDGLRYQLATGNWGIDKSGKSVRTGVSQVLNRLTFMSTMSHL 508 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 RR++ L R + R +H TH+G +CP ETPEG +GL+ ++++ G L Sbjct: 509 RRMNT----PLERSGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTITV-GSL 563 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG----HFVEDLVTCRSKGESS 643 + + + ++ + + N E L R K + Sbjct: 564 PNVVYDFLNEWGLENLDEINPSQIKHMTKVFLNGQWVGMHADATMLCETLRDLRRKRDID 623 Query: 644 LFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG 703 D + ++ + G L Q+ L + V Sbjct: 624 PEVSIIRDL-QANELRIFTDGGRACRPLYVVQPP------PSQK-----LCIKREHVEAL 671 Query: 704 MERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNT 763 + + G + G+V+Y+DA + + Sbjct: 672 RRMLLNNEHGGWDMLVEEGLVEYIDAEEEETCMVAMFVDDLRNA---------------- 715 Query: 764 CINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVV 823 Q PS LG + + +P+ +N + Sbjct: 716 ---QRRKSKASSYCHTYTHCEIHPSLILG-------VCASIIPFPDHNQSPRNTYQSAMG 765 Query: 824 QEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDIL 883 ++ ++ R + P VG A+ L + Sbjct: 766 KQ--AMGVYATNFN--MRIDTMAHVLNYPQKPLVGTRAMEYLRFRELPA----------- 810 Query: 884 VGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK 943 + AI + +DS + + + + F ++ + Sbjct: 811 --------------GNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYMADEKR 856 Query: 944 RALEIEEMQL----KQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + ++ E + + L+ + + K+ +P Sbjct: 857 QGAQVVEEFRAPSWSKTYAMKRGDYSKLDNDGLINPGTRVHGDDILIGKVSPIPN----- 911 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRR 1059 Q E ++Y E K + K K+ + R Sbjct: 912 --------QTDEEGRIQKYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVRTLRV 963 Query: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 GDK A RHG KG + EDMP+ + Sbjct: 964 PTIGDKFASRHGQKGTMGISYRQEDMPFTQ 993 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 135/1039 (12%), Positives = 262/1039 (25%), Gaps = 227/1039 (21%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 + L+S Q+ SF F+ Y ++ PI N Sbjct: 113 DSWAVADAYFKDKGLVSQQVGSFDDFVT------YKMQEIVDECPPITIIPQN------- 159 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 ++ E+ V V G++ L Sbjct: 160 --------------------------QVGW-----ESEGARVYMDSSFLVEFGQLSL-NK 187 Query: 133 NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKD 192 ++G + R + + S + P L + Sbjct: 188 PTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYALADPDDPNSEKQL-----ISE 242 Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 + + +I ++P + + L + Sbjct: 243 DSYSKIL-IGRIPMMLKSEYCWLKNQTERGLVEMGECVF----------------DQGGY 285 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 F I + KV + R +K K + + Sbjct: 286 FIINGSEKVLIAMERMANNFVYCFQKKQPAKYTWICXXLLDMM----------------P 329 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 L + GH+R+ + Y E L+ + Sbjct: 330 RGRLPWTSSLKEGQPLGHRRVVVYTGLPNVYNRYAKELLQKE------------------ 371 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 + I ++ +L Sbjct: 372 ----------------------------------LLPHLGVKQYCEPRKAYFIGYMVHRL 397 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQ 490 + + G+ DD DH G +R+ G + F ++ + K L Sbjct: 398 LLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKRILQRQVDSGRHFDLN 457 Query: 491 DMINA-KPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPG 536 I + I+ ++ + SQ +++ +S ++H RR++ Sbjct: 458 SAIRSASSITDGLRYQLATGNWGIDKSGKSVRTGVSQVLNRLTFMSTMSHLRRMNT---- 513 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 L R + R +H TH+G +CP ETPEG +GL+ ++++ G L + Sbjct: 514 PLERSGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTITV-GSLPNVVYDFLN 572 Query: 597 GVVTDEIHYLSAIEEGNYVIAQANSNLDEEG----HFVEDLVTCRSKGESSLFSRDQVDY 652 + + ++ + + N E L R K + D Sbjct: 573 EWGLENLDEINPSQIKHMTKVFLNGQWVGMHADATMLCETLRDLRRKRDIDPEVSIIRDL 632 Query: 653 MDVSTQQVVSVGASLIPFLEHDDAN----------------RALMGANMQ---------- 686 + ++ + G L R L+ Sbjct: 633 -QANELRIFTDGGRACRPLYVVQPPPSQKLCIKREHVEALRRMLLNNEHGGWDMLVEEGL 691 Query: 687 RQAVPTLRADKPLVGTGMERAVA------------------VDSGVTAVAKRGGVVQYVD 728 + + + +V ++ + ++ + D Sbjct: 692 VEYIDAEEEETCMVAMFVDDLRNAQRRKSKASSYCHTYTHCEIHPSLILGVCASIIPFPD 751 Query: 729 ASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 ++ + M G+ Y R + + P L Sbjct: 752 HNQSPRNTYQSAMGKQAMGV--YATNFNMRIDTMAHVLNYPQKPLVGTRAM-------EY 802 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 EL G N VA M ++GYN EDS++++ + ++H + + Sbjct: 803 LRFRELPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYMADEKRQGAQVV 862 Query: 849 EITADIPNVGEAALS-----KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 E A+ KLD G++ G V G DIL+GKV+P Sbjct: 863 EEFRAPSWSKTYAMKRGDYSKLDNDGLINPGTRVHGDDILIGKVSPIPNQTDEEGR---- 918 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 + +D S+ + +G V V + K + K S Sbjct: 919 ----IQKYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVRTLRVPTIGDKFASRH 974 Query: 964 LQILEAGLFSRIRAVLVAG 982 Q G+ R + Sbjct: 975 GQKGTMGISYRQEDMPFTQ 993 >UniRef50_Q98S72 DNA-directed RNA polymerase n=1 Tax=Guillardia theta RepID=Q98S72_GUITH Length = 1109 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 150/1252 (11%), Positives = 333/1252 (26%), Gaps = 214/1252 (17%) Query: 129 LMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGK----THSSGKVLYNARIIPYRGSWL 184 F+ + + S + + + H I Y+G ++ Sbjct: 29 YFLRQKYFITKNFKEYNSFKGLTSIDFYLSNPIYQFGTLIHKILPRQSKELKITYQGEFI 88 Query: 185 -DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 + F + + P I N + L Sbjct: 89 ISINIQNNEKNFNLVYKEGDFPIMIKSLKCNLFGLKPHQLTEIDEEEFENGGYFITNGTE 148 Query: 244 ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + +R I + + + V ++ + Sbjct: 149 KLIRL-----IIVPRRNYIFTSSKISNTLRGKNFSSFACSIRCVNRYGLSRTFHLHYLTN 203 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 S N E ++ L +F + ++ + + + Sbjct: 204 GSILCRFIIRNQEFFFPVVIILKAIKDVSDTEIFKDITNNLHD-NNMFKEVAIKLISDSY 262 Query: 364 VEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKD 423 I R +F + + G+ +L E Sbjct: 263 NYIKSNFRDNYLEYIGK----LFKIFEKKIHLNNLETGKNLIENNLFIHV-ENDMNQKYL 317 Query: 424 DIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK--ERLSL 481 +I +++KLI R G ++ D + + I G + + L +K E +++ Sbjct: 318 LLIYMIQKLIKSRMGLNLGENPDSIEFQEILLSGNLIGSILEKKLSANFDLIKIDEFMNI 377 Query: 482 GDLDTLMPQDMIN-AKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITH 526 + + ++ S ++ S + + +++NN ++ Sbjct: 378 ENSPIRKTKLIMKVFSNFSVGIRYLISSGNVPLIVNFEIPQTSGFNISIERNNYSRFLSF 437 Query: 527 KRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF 586 R ++ G R + P+++G +CPI TP+G G++N L++ + T+ Sbjct: 438 FR---SIHRGKYFTTLKTTSGRKLMPSNWGYLCPIHTPDGSLCGILNHLTISSITSVVNP 494 Query: 587 LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFS 646 +E + + + I + + + + Sbjct: 495 IER--INFLKYFKKHKTIFDRLSFKNRTSIILLDGKIIGF----STEIFLK-----WFTD 543 Query: 647 RDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMER 706 + + + + S+ + + + ++ R P Sbjct: 544 KIRCEKVSDFGIFSNSIEIVCLKNENILNLFELKIYSSEARLLRPVRWNSFNSNFNKTNS 603 Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 + N + + Y I+ Sbjct: 604 K----------------------NESSFTYNFHTIELIGSLEQSY-----------LNIH 630 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q GE + P+ N + ++ ++ Sbjct: 631 QSIFTKKGEICLLYTHYEIDNLNIFSIVP-------GCTPFFDMNQSPRNMYQCQMAKQS 683 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 H + + IP +K+++ G+ Sbjct: 684 IGIPFH----NIWRKMDSKIYFLFSVQIPICR----NKINQDGL---------------- 719 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL 946 G + + + D++D+ + + + + ++ + + + Sbjct: 720 ----GLDNFINGFNAVVGVLSYSSFDMEDAVVFNKSSIERGLGMSYIYNTSNFDVNLSMI 775 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 + + + L + Sbjct: 776 KNLNKNYSTLHYNC--------LDGICNVGNALKKKDIILL------------------- 808 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKM 1066 + + + + ++ KI + V + L KR+ GDK Sbjct: 809 NNKLVNNKLVRETTINYNNDEIASVDCVKILKNYSKIQSKHN-VMIRLKSKRKPIEGDKF 867 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 A RHG KG++S +E++P+ E G DI+ NP G PSRM IG ++E+ G + G+ Sbjct: 868 ASRHGQKGILSFKYEVENLPFSETGIIPDILFNPHGFPSRMTIGMVIESLSGKSGALNGN 927 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 ++ F+ + + F +E+ Sbjct: 928 FNDSSPF--------TSFLNCNKSYIFGEFLRENGFEFYGKEM----------------- 962 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 Y G G + V VG ++ +L H++ DK Sbjct: 963 -------------------------FYSGFVGLPLQTDVFVGVIHYQRLKHMILDKFQVS 997 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD---------- 1296 + + + +T+QP+ G+ G R GEME AL +G + L E + SD Sbjct: 998 NNSARNHLTRQPIKGRKLGGSIRLGEMERDALLGHGCIFLLHEKMQKSSDLHGVFIENTN 1057 Query: 1297 ---------DVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 N +K I + +P L+ E+ L +N+ + Sbjct: 1058 SDIKDLFFNKYNYNSKFLSTIKSY--PRKIFVPYVLRYLICELSVLNLNLNI 1107 Score = 72.2 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 50/363 (13%), Positives = 102/363 (28%), Gaps = 44/363 (12%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP----- 78 + LL I L+S+ + I Q ++ S+ G + + + L P Sbjct: 9 LQSLLKIHLNSYNQIISQGFYFLRQKYFITKNFKEYNSFKGLTSIDF---YLSNPIYQFG 65 Query: 79 ----VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT--- 131 ++ + +TY + + + E+ + + + L Sbjct: 66 TLIHKILPRQSKELKITYQGEFIISINIQNNEKNFNLVYKEGDFPIMIKSLKCNLFGLKP 125 Query: 132 ------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL----YNAR 175 + G F+ NGTE++I + F S K GK + R Sbjct: 126 HQLTEIDEEEFENGGYFITNGTEKLIRLIIVPRRNYIFTSSKISNTLRGKNFSSFACSIR 185 Query: 176 IIPYRG--SWLDFEFDPKDNLFVRIDRRR---KLPATIILRALNYTTEQILDLFFEKVIF 230 + G + ++ R R P IIL+A+ + F+ + Sbjct: 186 CVNRYGLSRTFHLHYLTNGSILCRFIIRNQEFFFPVVIILKAI---KDVSDTEIFKDITN 242 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVE 290 + DN + E+ + + + + + + EK + Sbjct: 243 NLHDNNMFKEVAIKLISDSYNY-----IKSNFRDNYLEYIGKLFKIFEKKIHLNNLETGK 297 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 + + ++ + + M L G F L G I Sbjct: 298 NLIENNLFIHVENDMNQKYLLLIYMIQKLIKSRMGLNLGENPDSIEFQEILLSGNLIGSI 357 Query: 351 LRV 353 L Sbjct: 358 LEK 360 >UniRef50_UPI0001742EB4 DNA-directed RNA polymerase beta chain n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742EB4 Length = 487 Score = 408 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 216/490 (44%), Positives = 317/490 (64%), Gaps = 5/490 (1%) Query: 242 VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY 301 +P L+ E + E + + + +L E+ + G V +D Sbjct: 1 MPVFLKAVDFFHTNEEIMNEFFELKEVELSEFYSKYKD--TELEEILRSRLEGSFVREDV 58 Query: 302 IDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS 361 +DE TGE + A + + ++ K+ + +++ I+ L D T + Sbjct: 59 LDEETGEFVAEAEEIIDIPVIQKIIDAKVEKLSIWEVK--PEDRIIANALVHDSTKNSDE 116 Query: 362 ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILS 421 A++E++R +RPG+ T ++A SL + +FF+ RYDL+ VGR K N+ L + +L+ Sbjct: 117 AVIEVFRKLRPGDLVTVDSARSLVKQMFFNPQRYDLADVGRYKVNKRLKLDVPADVIVLT 176 Query: 422 KDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL 481 K+D++ ++ + ++ +G+G DDID+L NRR+R VGE+ Q + G++++ + V+E++++ Sbjct: 177 KEDVLQTIEYVKNLVSGEGFTDDIDNLSNRRVRGVGELLSIQIKGGMLKMSKMVREKMTI 236 Query: 482 GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRE 541 D+ TL PQ ++N KP++A + EFFGS QLSQFMDQ+NPLSE+THKRRISALGPGGL+R+ Sbjct: 237 QDITTLTPQSLLNTKPLNALILEFFGSGQLSQFMDQSNPLSELTHKRRISALGPGGLSRD 296 Query: 542 RAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVV-T 600 RAGFEVRDVH +HYGR+CPIETPEGPNIGLI SLS Y + N+YGF+ETP+ K+ DG Sbjct: 297 RAGFEVRDVHNSHYGRICPIETPEGPNIGLIASLSTYGKVNKYGFIETPFVKINDGKADF 356 Query: 601 DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 ++I YL+A EE IAQA++ +D++G+F+ D V CR E + +VD +DVS +Q+ Sbjct: 357 NDIRYLAADEEEGLFIAQADTPIDKDGNFLTDEVVCRYGDEIVHIDKSKVDILDVSPKQL 416 Query: 661 VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720 VSV A LIPFLEHDDANRALMG+NMQRQAVP L+ + P VGTG+ER VAVDSG +K Sbjct: 417 VSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPYVGTGLERKVAVDSGAVITSKA 476 Query: 721 GGVVQYVDAS 730 G V + Sbjct: 477 SGTVPLLHVE 486 >UniRef50_A4RSZ5 DNA-directed RNA polymerase n=2 Tax=Ostreococcus RepID=A4RSZ5_OSTLU Length = 1145 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 176/1246 (14%), Positives = 343/1246 (27%), Gaps = 245/1246 (19%) Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATII 209 HR G + G Y A + +D E N+ R+ P + Sbjct: 92 HRISGRTESQKTPRGCREGGESYKAPLSVQFCWQIDGE-----NVQRRVVNLGDCPVMVK 146 Query: 210 LRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRI 269 + L + + +R I+ + RR Sbjct: 147 SDVCSLALLSPAQLVARGEEAHEAGGYFIINGIERMIRM-----IIQQRRHHILGLCRRA 201 Query: 270 TARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSG 329 + + + V + + V + + E + L Sbjct: 202 FTKRSPLFSEFATVIRCVTEDEHSSIVRLHYMRTGALRLALQHRRQEFFIPAGIVLRALA 261 Query: 330 HKRIETLF--------------TNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 ++ T D + ++ AL + + R Sbjct: 262 VCSDAEMYRQVCLHLRSAGTDETFIEDRLALLQRECHELQIRTQMCALSYLGQHFRTLLD 321 Query: 376 PTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 + + ++ F +I ++ KL+ I Sbjct: 322 LSSDESDISVGERFLE-----------------DFIYVHLQHNGDKLSLLILMLSKLLSI 364 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 G+ DD D L N+ + G + + ++E++ + Q ++ Sbjct: 365 VTGRCSPDDPDSLVNQEVLVPGLLLQAM-----------IREKVRIA------FQKVVTH 407 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 + S+ I+H + G + E ++ Sbjct: 408 LRRTQ--------GSWSE--------ETISHL-----INESGSSDVGKVVE-------YF 439 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 + +P G + + ++ A+ Y + +R V G E+ + + Sbjct: 440 LATGNLVSPTGLGLSQTSGFTIVAEKLNYFRYISHFRSVHRGAYFMELRTTTVRKLLPES 499 Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 +G L E + D V + Q+ SV + +E D Sbjct: 500 WGFLCPVHTPDGSPCGLLNHLAEMCEIVMPDTDHV-FQQKRLLQIHSVLDRALISVEQYD 558 Query: 676 ANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQY----VDASR 731 A VP + L G+ + A ++ A R V + S Sbjct: 559 CGYAH---------VPVV-----LEGSFVGYISAENASHVISALRAFKVTLTTSVLRMSE 604 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP----VERGDVLADGP 787 I E Y ++ R + ++ + E + V + Sbjct: 605 ISYIHPGGEHGLFPGLYIFYGPSRLMRPVKQVESMKVEFIGTLEQAFLSISAHQVESHNA 664 Query: 788 STDLGELAL--GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 S E+ + + PW+ +N + ++ ++ T +H R Sbjct: 665 SYTHAEIRNTSALSCVASLTPWSDFNQSPRNMYQCQMAKQTMGTPMHTICY----RSDTK 720 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 T P K + A+ Sbjct: 721 LYRLHTPQRPLALTCTYDKYSLD-------------------------DYALGTNAVVAV 755 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 D++D+ + + ++ K L + + E + Sbjct: 756 IAYTGYDMEDAMIVNKGSLHRGFAHATLY------KTLVEGISANETLSRRDNTYTSENK 809 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 L+ ++ +++ G + + + + Sbjct: 810 QLDGTGSVQLGSIVRPGDTLLNLHS--------------SDGVTKGRSIRLR------GT 849 Query: 1026 EKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDM 1085 + + K A K + L R GDK + RHG KGV+S + P EDM Sbjct: 850 DAAVVDKVVLTQSVKQAATKNDKRAAITLRYDRNPVIGDKFSSRHGQKGVLSFLWPEEDM 909 Query: 1086 PYDE-NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 P+ + G D+++NP + IG + ++ Sbjct: 910 PFSDRTGLRPDVIINPHAF---------------PSRMTIGMLVESL------------- 941 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 A GA D + F + + + E +LL+ Sbjct: 942 ---AAKAGASTGIFADATPFKHSDK------------------EISPTEEYGKLLRESGY 980 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVD--DKMHARSTGSYSLVTQQPLGGK 1262 G RL +G TGE F + +G +Y +L H+V H RSTG + +T QP+ G+ Sbjct: 981 NFCGSERLVNGCTGESFSVDIFIGLVYYQRLRHMVSLFHTFHVRSTGPNNPLTMQPIKGR 1040 Query: 1263 AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK--------------- 1303 GG RFGEME +L A+G AY L +L + SD+ V Sbjct: 1041 KSGGGIRFGEMERDSLLAHGVAY-LVSLLHICSDNRDAWVCNMCGSLIAPLTCVASIRTD 1099 Query: 1304 -------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P F L E+ ++ I+++++ + Sbjct: 1100 EYSSRRTSCRVCDSAHKLERISIPHVFIYLTAELAAMNISVQVKAK 1145 Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 45/253 (17%), Positives = 77/253 (30%), Gaps = 65/253 (25%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS----GNS 66 + P + + L + +DSF G + R V P + Sbjct: 23 EFDNRDSVPSEVPIKKLFACHVDSFNHL------TNLGFDQILRCVKPEKFQQSAGCPEL 76 Query: 67 ELQYVSYRLGEPVF------------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTV 114 L +L F + C+ G +Y APL V+ I Sbjct: 77 MLWLEDLKLESLKFRHRISGRTESQKTPRGCREGGESYKAPLSVQFCWQIDGEN------ 130 Query: 115 KDIKEQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLH 150 ++ + V +G+ P+M + G F+ING ER+I + Sbjct: 131 --VQRRVVNLGDCPVMVKSDVCSLALLSPAQLVARGEEAHEAGGYFIINGIERMIRMIIQ 188 Query: 151 RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRR- 202 + + + L++ R D + L + + RR Sbjct: 189 QRR-HHILGLCRRAFTKRSPLFSEFATVIRCVTEDEHSSIVRLHYMRTGALRLALQHRRQ 247 Query: 203 --KLPATIILRAL 213 +PA I+LRAL Sbjct: 248 EFFIPAGIVLRAL 260 >UniRef50_C9SKJ8 DNA-directed RNA polymerase n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SKJ8_VERA1 Length = 1105 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 120/956 (12%), Positives = 253/956 (26%), Gaps = 150/956 (15%) Query: 128 PLMTDNGTFVINGT---ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 P+ T F + + +V Q S F D + + + + + + + Sbjct: 24 PISTQEDKFQLLPAFLKVKGLVKQHIDSYNFFVDHEIKDIVRANRTIRSDVNSSFWLEFT 83 Query: 185 DFEFDPKDNLFVRIDR--RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELV 242 D + L R P LR + Y +D+ + + +I + + + Sbjct: 84 DIRVESPSRLDFNDARAHSEVTPMECRLRDMTYGAPIFVDIAYIRDKSKIVRRNVPLGRL 143 Query: 243 P----------------------ERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD 280 P E F I KV + + + R I + ++ Sbjct: 144 PVMLKSAKCRLNGASNKEMALMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEK 203 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN- 339 + + + + + + + ++ L G + Sbjct: 204 NNIITASVTSSTHERKTKTNITLKKDRISLVHNVLVEPAPIVIVLKALGGLSDLEIMQLV 263 Query: 340 ------DLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED 393 D + + AL I ++ G F+ + Sbjct: 264 AGDDGRYQDEFTVNFDEATKQGVYTQQQALEWIGSRVKMG-------GRGRFQPNSQARK 316 Query: 394 RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + + + + ++++ + VDD D +GN+R+ Sbjct: 317 NNIEEGMDALSNLIIAHIPVEGLDFYPKAIYVAFMTRRVLMAQANMSLVDDRDFVGNKRL 376 Query: 454 RSVGEMAENQFRVGLVRVERAVK-------ERLSLGDLDTLMPQDMINAKPISAAVKEFF 506 G++ F + VK ++ + + +A I + Sbjct: 377 ELAGQLLSLLFEDLFKKFCGDVKASIDKVLKKDNRAVAMDAVTMISNHANNIGQGINRAI 436 Query: 507 GSSQLSQ---FMDQNNPLSEITHKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRV 558 + + M++ ++ ISALG + R R + P+ +G + Sbjct: 437 QTGNWTVKRFNMNRAGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGML 496 Query: 559 CPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVT-DGVVTDEIHYLSAIE---EGNY 614 CP +TPEG GL+ +L++ E R V + I S E EG+Y Sbjct: 497 CPSDTPEGEACGLVKNLALMTHITTNAEEEPVKRWVFTVDDNVEPIRNFSGSEMHREGSY 556 Query: 615 VIAQANSN---LDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 +I + F T R +G S F ++ + + + + Sbjct: 557 IIHINGTPFALTKFPKRFTNRFRTMRRRGWISPFVGVHINNHFNA-VHIATDEGRICRPY 615 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV----------------- 714 + + A + + G+ + V+ Sbjct: 616 IIVKNGKPKLKAEHLKLLQLGKATFDDFLTNGVVEYLDVNEENDTLVALYETDVNQSTTH 675 Query: 715 ------TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQM 768 T + G++ + ++ + M G Y ++ R + Sbjct: 676 MEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAY--NQFNRIDTLLYTLVY 733 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRF 828 P + +L GQN V M ++GY+ ED++L Sbjct: 734 PQRPMVISKTI-------QLIHYDKLPAGQNATVVVMSYSGYDIEDALL----------- 775 Query: 829 TTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVT 888 L + +GE A V L T Sbjct: 776 --------------WILMAWPWSVARSGLGE---------------AMVKKETPLDTGST 806 Query: 889 PKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEI 948 G + E +DSS+ + V + + + Sbjct: 807 GIGNDRGPSE--------------FRDSSISYRIPDPAYIDKVMISQSEKDNMVIKVQTR 852 Query: 949 EEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 + + + K S Q G+ + + + P + + Sbjct: 853 QTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPSRMTVGK 908 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 91/467 (19%), Positives = 166/467 (35%), Gaps = 80/467 (17%) Query: 888 TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE 947 +P+ Q ++ + AI + D+ L ++ + +K Sbjct: 699 SPRNTYQCAMGKQAIGAI-AYNQFNRIDTLLYTLVYPQRPMVISKTIQLIHYDKLPAGQN 757 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 + + + D+ + L + + + +K L +G Sbjct: 758 ATVVVMSYSGYDIEDALLWILMAWPWSVARSGLGE-AMVKKETPLD-TGSTGIGNDRGPS 815 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 + + ++ + + K D ++KV RR + GDK + Sbjct: 816 EFRDSSISYRIP------DPAYIDKVMISQSEKD-----NMVIKVQTRQTRRPELGDKFS 864 Query: 1068 GRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD- 1126 RHG KGV+ I ED+P+ + G DI++NP G PSRM +G++LE G A+ G Sbjct: 865 SRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPSRMTVGKLLECLTGKASVLDGRP 924 Query: 1127 -KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 + + ++ E + G P+ Sbjct: 925 DYGFGDAFRSHPLKQMSEALVDHGFSWEGKDYFTSGI---------------TGEPLEAY 969 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 +F+ G +Y +L H+V DKMH+ Sbjct: 970 IFN---------------------------------------GPIYYQRLKHMVQDKMHS 990 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGR 1301 R+ G +++T+QP G+++ GG R GEME L AYGA+ L E L + SD D+ + Sbjct: 991 RARGPRAILTRQPTEGRSREGGLRLGEMERDCLIAYGASQLLLERLMISSDGTEIDICQQ 1050 Query: 1302 T------KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + MP + +L++E+ S+ + + L+ E Sbjct: 1051 CGLFGYKGYCHTCRSTKEVTKMTMPYAAKLLVQELISMNVGVRLQME 1097 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 87/269 (32%), Gaps = 40/269 (14%) Query: 5 YTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG 64 F P L V L+ +DS+ F++ + + RS + Sbjct: 22 TDPISTQEDKFQLLPAFLKVKGLVKQHIDSYNFFVDHEIKDIVRANRTIRS-----DVNS 76 Query: 65 NSELQYVSYRLGEPV------------FDVQECQIRGVTYSAPLRVKL------------ 100 + L++ R+ P EC++R +TY AP+ V + Sbjct: 77 SFWLEFTDIRVESPSRLDFNDARAHSEVTPMECRLRDMTYGAPIFVDIAYIRDKSKIVRR 136 Query: 101 -----RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGV 155 RL + + A ++ M E PL G F+INGTE+VI+ Q S Sbjct: 137 NVPLGRLPVMLKSAKCRLNGASNKEMALMNECPL-DPGGYFIINGTEKVILIQEQLSKNR 195 Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRAL-N 214 K + + ++ R + + V P I+L+AL Sbjct: 196 VIVEADEKNNIITASVTSSTH--ERKTKTNITLKKDRISLVHNVLVEPAPIVIVLKALGG 253 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVP 243 + +I+ L ++ + Sbjct: 254 LSDLEIMQLVA--GDDGRYQDEFTVNFDE 280 >UniRef50_P42487 DNA-directed RNA polymerase subunit 2 n=7 Tax=African swine fever virus RepID=RPB2_ASFB7 Length = 1242 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 195/1400 (13%), Positives = 390/1400 (27%), Gaps = 277/1400 (19%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAF---------RSVFPIQSYSGNSEL 68 ++ L+ + SF ++ + F R I + ++ Sbjct: 30 ISAAVNSTGLIGYNIKSFDDLMDNGIPQIV--KQMFNVDITYKDQRDHTEIDKLRESVQI 87 Query: 69 QY--VSYRLGEPV-----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 Q+ + P + ++ G++YS P+ + +++ + Sbjct: 88 QFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAEVILTAHYSNGR--- 144 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 QEV IP + ++ G+ R L K Sbjct: 145 ----QEVKRASIPPFQVSTFPIMRGSNRCHTHHL--------SKTAKKEIGEDPNEPGGY 192 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235 I G W +L + + T I ++ EI Sbjct: 193 FIARGGEW----------------------VVDLLENIRFNTLHIHYHTMQQGNNEIIRG 230 Query: 236 KLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 + I G + + I ++ + I Sbjct: 231 EF-----------------ISQPGGAFENSSQIIIRYMTTGAITIEINSTKFSKLRIPWY 273 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 ++ + + +I E + L S IE L + P V Sbjct: 274 LIFRMFGMTGDDSII-----EQVVFDLESNSPVNTFMIEILEKSIHVLDPIFQP---VQH 325 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 +R + + + + + +A EN + L+ + ++ + Sbjct: 326 EPNREKIIQFLSEKV--SKFVSNPSAYKSDENAVQYLNERQLTILDKILLPH---MGQTA 380 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVR----- 470 + + + ++ K++ + D D +R+ G F+ Sbjct: 381 DTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNTSVIAP 440 Query: 471 VERAVKERLSLGDLDTLMPQDMI----------NAKPISAAVKEFFGSSQ---------- 510 + KE L + L +++I A ++ ++++ S Sbjct: 441 IINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPI 500 Query: 511 ----LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV-RDVHPTHYGRVCPIETPE 565 +Q +++ N L+ I+ R ++ +++ ++ R VH ++ G +C ++ + Sbjct: 501 VNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMMRRVHASYPGYICVAQSAD 560 Query: 566 -GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE--GNYVIAQANSN 622 G +G+ L++ A G + + +++ ++ +S + N Sbjct: 561 TGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARVFINGE 620 Query: 623 LDE----EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 + R +G+ V + L L D N Sbjct: 621 WIGCCTNAFELAQRYRMFRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLIVDNNI 680 Query: 679 ALMGANMQRQAVPTLRADKP--LVGTGMERAVAVDSGVTAVAKRGGVV-QYVDASRIVIK 735 + A + DK + S + G + + + A I Sbjct: 681 EKYNQACYKAAEARKKGDKDWEKHKIPFIQNTRFTSQMAKDILAGTLTLEDLVAQGICEF 740 Query: 736 VNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELA 795 + +E I L K+ + D P LG A Sbjct: 741 ITPEEAENCLVAFSIIELRKHKHDVTRRFTH-----------------VDVPQAILGLAA 783 Query: 796 LGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIP 855 L P+ + ++ + ++P Sbjct: 784 L-------VSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRF----FQFYNEMP 832 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 V A + + +G+ + A + +D Sbjct: 833 LVKTIAHNYVIPNGL-----------------------------NTIVAYMIYGGYNQED 863 Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 S + + + + + VE + + K F + Sbjct: 864 SVIVSQSFIDRGGFAGTFYREEKVELESDIESFGKPDPLITKNLKPGANYEKLVDGFVPV 923 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 V+ G + K+ ++++ N+ + Y + Sbjct: 924 GTVVKKGDIIIGKVA---------KIRGEKDELNKYIDRSVMYG---------FDEPAVV 965 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 P + L +R + GDKM+ R GNKG+ + P DMP+ E+G D Sbjct: 966 DAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPD 1025 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 +++NP PSRM GQ++ET +G+A G + V L E + + Sbjct: 1026 LIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLPINVQLLSERLAQEGLRFNGC 1085 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 ++ F+G Sbjct: 1086 QKM----------------------------FNGQTGEY--------------------- 1096 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLV-DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEME 1274 F+ + +G Y +L V DD+ S G +T QPL GK GG R GEME Sbjct: 1097 -----FDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEME 1151 Query: 1275 VWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN-------------IVDGNHQMEPGMPE 1321 W L A GA T+ E SD ++ + Q + GM + Sbjct: 1152 HWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYNASHPIYKCMNCDVQADIGMVD 1211 Query: 1322 SFN---VLLKEIRSLGINIE 1338 S V E+R+ +NI Sbjct: 1212 SRRSSIVFQHEMRAANVNIT 1231 >UniRef50_Q06VE3 RNA polymerase subunit n=3 Tax=Ascovirus RepID=Q06VE3_TNAVC Length = 1160 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 183/1397 (13%), Positives = 388/1397 (27%), Gaps = 295/1397 (21%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M +Y K + F K + QLDSF F++ + P+ Sbjct: 1 MSTTYDSYKVVELWFKK-------YGTVKAQLDSFTSFLDN-------IRTVLHDEPPLV 46 Query: 61 SYSGNSELQYVSYRLGEPVF---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPE 111 G +++ + P + +++G+ Y + V + Sbjct: 47 I--GGEVIRFENVTFLTPSYLVNGISKTLYPSIARMKGLNYEFTMCVDV----------I 94 Query: 112 GTVKDIKEQEVYMGEIPLMTDNGTFVING---TERVIVSQLHRSPGVFFDSDKGKTHSSG 168 +++ V + ++P M + + G E + ++ PG +F H+ Sbjct: 95 NETTGVRDNGVELCQLPCMVGSEMCNLKGMSDAELLTHGEILGIPGGYF------IHNGV 148 Query: 169 KVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV 228 + + I P + + +++ ++ R T +A+ T Sbjct: 149 ERVLIGHIKPAYNT--PIVYKTRNDKWICQLRSMND-ETAKSKAVAITRS---------- 195 Query: 229 IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI---RQLEKDDVKLI 285 L +E +R + A+ + + Sbjct: 196 ----NSGALVVEFDSGAVRTTITTKSANGKEDTSTSTTITAGAKVFLVSEVMRDLLGGDL 251 Query: 286 EVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGP 345 Y+ G + +I ++ E++ A L ++ + E T Sbjct: 252 GKLKTYLGGDYLDTTHISDTVDEILQAPENLQVYPELVRVVRECINNGEKPLTITTTIKK 311 Query: 346 YISETLRVDPTNDRLSALVEIYRMMRP-GEPPTREAAESLFENLFFSEDRYDLSAVGRMK 404 + + + ++ E+Y + P +E A+ + + Sbjct: 312 IL---VVPKRVSTKVIQRSELYNRLEPVIRECVKEGADITDIMVIVNNAAKYKPLHDYST 368 Query: 405 FNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 + ++ + +++++ + G + + + +R+ G M + F Sbjct: 369 LFMHIGIRC---DNVVRAHFLGNMIRRYVLTEKGAIKEESREQYSKKRVDFAGTMCLDLF 425 Query: 465 RVGLVRVERAVKERLSLGDLDTLMPQDMINA--KPISAAVKEFFGSSQL----------- 511 ++ + R S D P + INA + I +K F + Sbjct: 426 KMTWKQFLIDAASRTS----DRCNPINAINAVKRGIGYQIKMCFVHGRWGAKNAEHKTIG 481 Query: 512 --SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNI 569 + + + I RR+ + +E +R + +H C +ET EG ++ Sbjct: 482 IVEAIPVKTSVATSIDSLRRMKL----QVHKENKDRSIRKLCTSHAFFACCVETTEGADV 537 Query: 570 GLINSLSVYAQTNEYGF-----LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD 624 G+ +L+ A + + + T E S + ++ Sbjct: 538 GIRLALAAVAFASVRQPTMLVRDIIEFTLLDKLKPTLECVATSPKYAAILLNGTPIGYVE 597 Query: 625 EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHD--DANRALMG 682 + ++ L R + +DY+ V V + L D +M Sbjct: 598 DHEITIKILRKLRDLRRFNDDVSISMDYI-VKCIDVWCDCGRFVRPLLVKSHDMCEKIM- 655 Query: 683 ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMY 742 T +V V I I +E M Sbjct: 656 -----------------------------EANTMDELEQSLVV-VHRDAIEISRSEIAMT 685 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 P EA +D Y ++ PS LG + Sbjct: 686 PNEAILDDYEYSELN-----------------------------PSCMLG-------LLA 709 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 +P+ Y + ++ I + A P + Sbjct: 710 GEIPYANYTPSPRACYKTNMARQSMGILPSISKFNNH----SNSIHLNYAQAPIITTRCA 765 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 + + A+ + +DS + + Sbjct: 766 K-------------------------ATKVNEYPNGINAIVAVMAHTGFNQEDSIIINKS 800 Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 + + + V+ + + + + + + + + +++ G Sbjct: 801 ALDRGMFNATQRREITVDLRIGTIVDDMCKPPEDLRIRA-NYDNIGEDGLPIMGSIIKKG 859 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 K+ E + + + K++ Sbjct: 860 DALLGKVSTDRNTSRRE-----------DTSIIARMQDEGVVKSVKID------------ 896 Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN-GTPVDIVLNPL 1101 V++ L V + GDK KG I P DMP+ + G DI++N Sbjct: 897 ----GSSVRIRLEVVLDVMIGDKFCSAMAQKGTCGMILPDIDMPFVADSGMIPDILVNVH 952 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 +PSR + + +M A L + +D Sbjct: 953 SMPSR---------------MTVNQIMASM----------------AGKLACITARNIDG 981 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 S F + ++ E L G + +G TGE F Sbjct: 982 SPFQLDV--------------------NDVLFDLCEQLAEVKYDKDGCETMCNGLTGEMF 1021 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGS-YSLVTQQPLGGKAQFGGQRFGEMEVWALEA 1280 P+ +G +Y L+ LV K+ + +T + + +T+QPL G+A GG R GEME L Sbjct: 1022 SCPIFIGVVYYLRPVQLVRHKIFSSTTTTMRNHLTRQPLNGRAHEGGLRVGEMEKDDLLR 1081 Query: 1281 YGAAYTLQEMLTVKSDDVNGRTKMYKNI----------------VDGNHQMEPGMPESFN 1324 +G+ LQE + SD +P + Sbjct: 1082 HGSINFLQERMLTLSDKHIMMICTICGSESHVALRSDGSFVCLRCKQLMVNPITIPYAAK 1141 Query: 1325 VLLKEIRSLGINIELED 1341 + + ++ +G+ ++ Sbjct: 1142 LFFQYLQGVGLGVKYNI 1158 >UniRef50_Q1L6W4 DNA-directed RNA polymerase (Fragment) n=1 Tax=Isoetes sp. JL-2005 RepID=Q1L6W4_9TRAC Length = 623 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 127/784 (16%), Positives = 226/784 (28%), Gaps = 183/784 (23%) Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS 621 TP+G N GL+ S++V+A E P G + + G V N Sbjct: 1 STPDGENCGLVKSMAVFA-IVTLETPEQPILDALLGHMMPP---EAVFPLGELVKVFLNG 56 Query: 622 NLDEE----GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN 677 + + R G + + + S L+ L D + Sbjct: 57 KWVGITDAENDLEQYVKRKRRGGGLDYQAIC----LRGKEINIFSDAGRLLRPLFIVDND 112 Query: 678 RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN 737 + + D + GV+++V A Sbjct: 113 ELCITKEHLFELRRKKPQDG-----------------FEYLVKEGVIEFVGAEEEYRA-- 153 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 I +L K RS+ + +LA G Sbjct: 154 -------SIAGSIQDL-KRPRSHHVRY--------THMELRPASLLAIGAF--------- 188 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV 857 +P+ +N ++ R I R E + P V Sbjct: 189 ------VIPFVNHNQSSRVMQQSRKHCRQ---AIGFNCSNLRVRCDTTSHELLYPQRPLV 239 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 A++ + G +L + + A+ + + +DS Sbjct: 240 RTQAMTLI-------------------------GRPELHNGQNPIVAVLSDTGYNQEDSI 274 Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEI--EEMQLKQAKKDLSEELQILEAGLFSRI 975 + + + + F + E + + L++ + Sbjct: 275 ILNQSSLDRGMFRSMHFHTHKDALKPTLDQRFGEPSESDVGGYKKQSHYEKLDSDGLPHV 334 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 A L + V K G E K + ++ + Sbjct: 335 GAALSSSDVIIGK--------LFTAGADVREVD----------ASQKLKHTERGRVDQVV 376 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 I +D VKV L R Q GDK + HG KGV+ ED+P+ +G D Sbjct: 377 IAAKNDAETD----VKVRLRECRTPQVGDKFSSMHGQKGVVGMCFHQEDLPFTRDGIVPD 432 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 +++NP P+R +GQ++E G AA + +A ++ + + E + +A + Sbjct: 433 LIINPHAFPTRQTLGQLMECLAGKAAAVSAREQDATPFVERSLPRFSEELHKAGFQRTGM 492 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 + R+ + G+ Sbjct: 493 ECMYSGRVGT-----RMKVRVNIGVTFY-------------------------------- 515 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 +L H+ +DKM R TGS +T+QP+ + + GG RFGEME Sbjct: 516 -----------------QRLTHMAEDKMKYRRTGSVHPLTRQPIVDRKRHGGIRFGEMER 558 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTKM---------------YKNIVDGNHQMEPGMP 1320 + A+GA+ TLQE L + SD + G++ + +P Sbjct: 559 DCMIAHGASATLQERLFLLSDPYVMYICTKCRRTASVEQNKVPRCRFCKCGSNIVRVNVP 618 Query: 1321 ESFN 1324 + N Sbjct: 619 YACN 622 >UniRef50_Q8HTL7 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_CHLRE Length = 626 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 163/565 (28%), Positives = 257/565 (45%), Gaps = 80/565 (14%) Query: 802 VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA 861 VA +P + S + + + + Sbjct: 54 VAVVP-------PLPIFSPELYKRQNKLKKTQNATIFSMGTSAFKNQVKYNLETYHRSNQ 106 Query: 862 LSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP 921 + L V G V GD+L + G +L ++ A + + +D+ L Sbjct: 107 DTCLIHKPAVKEGDWVEVGDLLADSASSIG-GELAIGHNIIVAYMPWEGYNYEDAIL--- 162 Query: 922 NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRA 977 ++ ++ ++T +E+ + + ++ +Q +++ + E++ L+ ++I + Sbjct: 163 --INERLVYEDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGIAKIGS 220 Query: 978 VLVAGGVEAEKLDK------LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEA 1031 + G + K+ P+ + L + + L + + A Sbjct: 221 WVEEGDILVGKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVININILA 280 Query: 1032 KRRKITQGDDLAPGVLKI-----------------VKVYLAVKRRIQPGDKMAGRHGNKG 1074 +++ G + +YLA KR++Q GDKMAGRHGNKG Sbjct: 281 RQKIQINTKSKNTGKGSKPPRASKAQNTMVSQPSYIHIYLAEKRKMQVGDKMAGRHGNKG 340 Query: 1075 VISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQ 1134 ++S+I P +DMP+ +G VDIVLNPLGVPSRMN+GQI E LG+A + +G+ Sbjct: 341 IVSRILPRQDMPFLPDGAAVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFD 400 Query: 1135 QQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAE 1194 + GAD + LS + + Sbjct: 401 EMY--------------GADASRSFVLSKLYEARKKTGLK-------------------- 426 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 L D G+IRL+DGR E F++ VTVG Y+LKL H+VDDKMHARSTG YSLV Sbjct: 427 -----WLLDPNHPGKIRLFDGRNSECFDQTVTVGIAYVLKLVHMVDDKMHARSTGPYSLV 481 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQ 1314 TQQPL G+++ GGQR GEMEVWA+E YGAA+ L EMLT+KSDD+ GR ++KN+++ Sbjct: 482 TQQPLRGRSKQGGQRLGEMEVWAIEGYGAAFVLSEMLTIKSDDMTGRQNLWKNLIENKEI 541 Query: 1315 MEPGMPESFNVLLKEIRSLGINIEL 1339 G PESF VL+ E+++L ++I L Sbjct: 542 S-LGSPESFKVLICELQALCLDIGL 565 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 105/313 (33%), Positives = 158/313 (50%), Gaps = 24/313 (7%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ P V G+ VE GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 96 YNLETYHRSNQDTCLIHKPAVKEGDWVEVGDLLADSASSIGGELAIGHNIIVAYMPWEGY 155 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T+IHI+ +++TKLG E+IT +IP++ E + LD++GI Sbjct: 156 NYEDAILINERLVYEDIYTSIHIERYEVTTKETKLGFEQITREIPDISENEIKHLDKTGI 215 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGK+TP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 216 AKIGSWVEEGDILVGKITPFNIKTLTPQQKLLYKIFDKQLSTTKDSSLRAPKGIKANVIN 275 Query: 931 VQVFTRDGVEKDKRALEIEE----------------------MQLKQAKKDLSEELQILE 968 + + R ++ + ++ + + L + +K + Sbjct: 276 INILARQKIQINTKSKNTGKGSKPPRASKAQNTMVSQPSYIHIYLAEKRKMQVGDKMAGR 335 Query: 969 AGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKK 1028 G + +L + D D L L + N + + Sbjct: 336 HGNKGIVSRILPRQDMPF-LPDGAAVDIVLN-PLGVPSRMNVGQIYECLLGLAGRYLGEH 393 Query: 1029 LEAKRRKITQGDD 1041 + G D Sbjct: 394 YKIPPFDEMYGAD 406 >UniRef50_Q67ZK6 DNA-directed RNA polymerase n=9 Tax=cellular organisms RepID=Q67ZK6_ARATH Length = 639 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 129/795 (16%), Positives = 230/795 (28%), Gaps = 185/795 (23%) Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD----EEGHFV 630 +S+ + LE+ K+ +E+ + N + + FV Sbjct: 1 MSLLGLVSTQ-SLESVVEKLFA-CGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFV 58 Query: 631 EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAV 690 +L + R + E + D D N + + R Sbjct: 59 AELKSRRRQSELPREMEIKRD----------------------KDDNEVRIFTDAGRLLR 96 Query: 691 PTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 P L + + + + YP + +D Sbjct: 97 PLLVVEN-------LQKLKQEKPSQ--------------------------YPFDHLLDH 123 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 L + C L + + S LG A +P+ + Sbjct: 124 GILELIGIEEEEDCNTAWGIKQLLKEPKIYTHCELDLSFLLGVSC-------AVVPFANH 176 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 + +L + + I R L + P A L + Sbjct: 177 DHGRRVLYQSQKHCQQ---AIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKK--- 230 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 L + + A+ + +DS + + + Sbjct: 231 ----------------------EVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFR 268 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 + E D + E + ++ + + +I K+D Sbjct: 269 SEQIRSYKAEVDAKDSE-KRKKMDELVQFGKTHSKI--------------------GKVD 307 Query: 991 KLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 L D + +G + + E + H + K + Sbjct: 308 SLEDDGFPFIGANMSTGDIVIGRCTESGAD--HSIKLKHTERGIVQKVVLSSNDEGKNFA 365 Query: 1051 KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIG 1110 V L R GDK + HG KGV+ + ++ P+ G DIV+NP PSR G Sbjct: 366 AVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPG 425 Query: 1111 QILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVM 1170 Q+LE L I ++++ A + + A Sbjct: 426 QLLEAALSKG-------IACPIQKEGSSAAYTKLTRHA---------------------- 456 Query: 1171 RLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYM 1230 F EI E L G R+Y+GR+GE + +G Sbjct: 457 --------------TPFSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPT 502 Query: 1231 YMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEM 1290 + +L H+ +DK+ R+TG +T+QP+ + +FGG +FGEME L A+GA+ L E Sbjct: 503 FYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHER 562 Query: 1291 LTVKSDDVNGRTK-----------------------MYKNIVDGNHQMEPGMPESFNVLL 1327 L SD + V +H + +P +L Sbjct: 563 LFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLC 622 Query: 1328 KEIRSLGINIELEDE 1342 +E+ S+GI + + E Sbjct: 623 QELFSMGITLNFDTE 637 >UniRef50_Q6YH81 DNA-directed RNA polymerase n=7 Tax=Ranavirus RepID=Q6YH81_9VIRU Length = 1221 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 174/1318 (13%), Positives = 353/1318 (26%), Gaps = 252/1318 (19%) Query: 96 LRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGV 155 L + + + + ++ E P M V RV + P Sbjct: 83 LHLYVSSANMHPSNFVRHHIESFDDMLW-NEFPAMVAREKPVSVKGYRVKFGTVRYEPPC 141 Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR--KLPATIILRAL 213 K + +A + D L + R K+P + Sbjct: 142 PDGKPWEKLTPAMARRTDATYHS--AAVCDLTVTDPKGLEIVYPRLELCKIPVMVGSAVC 199 Query: 214 NYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR- 272 + E F I+ +V V R + Sbjct: 200 W----------------TRTEGSPLPG---ECPSDPGGYFIIKGKERVVVPHIRPAYDQP 240 Query: 273 -HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHK 331 + + + V E V+ + D ++ + + G Sbjct: 241 CVYKNCDGWLCEFRSVNRETRQT-VLVQAKTDCRRKLEFSLPYIKQYVPVGLVFKALGKT 299 Query: 332 RIE------------TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTRE 379 E + H ++ L + + ++ + + G + Sbjct: 300 AREAVAMCGLGSFSGDEVSCRTVHHQSMAALLMEQHASAPEDPVADLAKHVPDGRFVYLK 359 Query: 380 AAE-----SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 AE + EDR + + + R +L EI G + + + ++K++ D Sbjct: 360 QAEGAKQAEDADRASVEEDRNSKGS--KEDYVRHILAGEIFLHGGDAAEHLGWMVKRMAD 417 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMIN 494 +G G D D L N+R+ + G + L + + + S G L P ++ Sbjct: 418 AASGIGTCTDRDDLANKRVDATGPLIAFLLDGLLKQYVKLFVK--SAGCQKNLCPYTVLQ 475 Query: 495 AKPI-SAAVKEFFGSSQL---------------SQFMDQNNPLSEITHKRRISALGPGGL 538 + + ++ F + SQ + NN + ++H RRI + Sbjct: 476 NSMVMTNSLHMCFATGNWTVKRLGPPSYVRVGVSQVLSNNNYGARVSHLRRI----MHAV 531 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 + +R +H +HYG +CP ETPEG +G++ +++ + E V G Sbjct: 532 SFRGKNIRMRQLHSSHYGFLCPYETPEGEKVGIVLNMAEGVGFSLETPREAVLATVRLGK 591 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGHF-------VEDLVTCRSKGESSLFSRDQVD 651 + + A ++++D +G V + R +V+ Sbjct: 592 GLPGFFEGAPARLA-WSGAAGSASVDVDGVLCGVTGDPVGFVREARLCLLGVSVVWKKVE 650 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 ++ + R P Sbjct: 651 ----REIHLLGCQGRFVR-----------------RVLDP-------------------- 669 Query: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 G+ + + + EM P + L + P V Sbjct: 670 ---------EGIRGSRYDNPPPPEERDIEMDPAPSSSPSDFLPRP------------PGV 708 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 + L DG D + + + +P+ + + ++ Sbjct: 709 YVCAQELSVCSLGDGEYADPPASEILTDAMSSVIPFYDHTQSPRNAYQSNMGKQAIG--- 765 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 + C R V ++ +L Sbjct: 766 -FPAVNCSDRYDATLHRLDYPQKSLVDSRSVKRLGFD----------------------- 801 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT--RDGVEKDKRALEIE 949 ++ + AI + +DS + + + + + ++ + Sbjct: 802 --EMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYRTVSCADKRRTKYDSEV 859 Query: 950 EMQLKQAKKDLSEELQILEAGLFSRI---RAVLVAGGVEAEKLDKLPRDRWLELGLT--- 1003 ++ + +L A++ K K P D+ G Sbjct: 860 VCLPDWGLRNREWDYDLLGDDGVIDPLCAGALVRRVEG-KRKAAKRPVDQRTGGGPAGLC 918 Query: 1004 ----DEEKQNQLEQLAEQYDELK------HEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 + +++ K + D+ K+VKV Sbjct: 919 DALWIPAGTVLVGKVSHSLGPEGNPVRRDASLTVKQSEEGYLDRVTVDVDSDGKKLVKVR 978 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L R RH G Sbjct: 979 L---RTP--------RHPEMG--------------------------------------- 988 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 A K QE + + ++ ++ Sbjct: 989 ----DKFASFTAQKGTCGAVLTQEDMPFDKNGVVPDLIINPHAFPSRMTVNYLLQMCFGT 1044 Query: 1174 ENLRKGMPIATPVFD-GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 + G F+ +I E K + LY G TG + + + Sbjct: 1045 AACKLGKTYDATAFEREDVVRDIAEAAKEAGIDCW-DSVLYSGSTGRRLPTKIFMAPCPY 1103 Query: 1233 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1292 +L H+V KMH+R+ G +T+QP+ G+++ GG + GEME W ++G + +L+E + Sbjct: 1104 QRLRHMVSGKMHSRTHGPTDALTRQPVAGRSREGGIKIGEMEQWCKISHGVSESLKESVY 1163 Query: 1293 VKSDDVNGRTKM----------YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SD Y + D +P + +L +E+RS+GI+I + Sbjct: 1164 DTSDKYEVPVCKECGRISDHFEYCRMCDATDVSLVKLPYTTKILFQELRSIGISIAFK 1221 Score = 74.9 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 64/225 (28%), Gaps = 49/225 (21%) Query: 26 YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP------- 78 + ++SF + + E +++ + R P Sbjct: 96 NFVRHHIESFDDMLWNEFPAMVAREKPV--------SVKGYRVKFGTVRYEPPCPDGKPW 147 Query: 79 -VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT------ 131 + TY + L + + +I + + +IP+M Sbjct: 148 EKLTPAMARRTDATYHSAAVCDLTVTDPKGL-------EIVYPRLELCKIPVMVGSAVCW 200 Query: 132 ---------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 G F+I G ERV+V + + K + + Sbjct: 201 TRTEGSPLPGECPSDPGGYFIIKGKERVVVPHI---RPAYDQPCVYKNCDGWLCEFRSVN 257 Query: 177 IPYRGSWL-DFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQ 219 R + L + D + L + ++ +P ++ +AL T + Sbjct: 258 RETRQTVLVQAKTDCRRKLEFSLPYIKQYVPVGLVFKALGKTARE 302 >UniRef50_O21237 RNA polymerase subunit beta n=1 Tax=Reclinomonas americana RepID=O21237_RECAM Length = 1478 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 262/986 (26%), Positives = 439/986 (44%), Gaps = 82/986 (8%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 + +R F +++ +P LL I S+ F+++ L+ +S+ + Sbjct: 10 KKDLSLRLGFSSINEIVPIPNLLKISKSSYNNFLQRFVPYSKRLDVGIQSLLKKYFGN-- 67 Query: 66 SELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMG 125 ++ Y G + EC G+TYS PL V L++ + + ++ Y+G Sbjct: 68 ---SFICYSFGVSEKNPDECLENGLTYSIPLYVFLKVNMKDNVKDTI-------KKYYIG 117 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 EIPL+TD+G+F+ING E +++QL R GV+ + K + + R + R LD Sbjct: 118 EIPLLTDSGSFIINGVENTVINQLVRDSGVYINKSKSPFIKTSLKI---RGLKGRSIQLD 174 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVPE 244 + +D + + +ID + + + + + + +++LD F + Sbjct: 175 YFYD--NFIGQKIDTKTLISGKNLNQNITHQEIDKLLDSFKISFKEIGETFTYSITEYKY 232 Query: 245 RLRGETASFDIEANGKVYVEKGRR--------------ITARHIRQLEKDDVKLIEVPVE 290 G F+ + K K + +I L + Sbjct: 233 CNMGWFIDFNWKEISKYRFIKKNKNIISTSLSFDNNLLANNDYISILNTVVNNKFISNDK 292 Query: 291 YIAGKVVAKDYIDESTGELICAANM-------ELSLDLLAKLSQSGHKRIETLFTNDLDH 343 ++ + D ++ I EL + + LS + L N + Sbjct: 293 FLNHDLFLLDIYKDNKSIFIIENTNDDFSYPLELLNKVGSHLSSFKNSDFLFLIENKNIN 352 Query: 344 GPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED-----RYDLS 398 YI L+ P + R S V I + + ++ + +N FF E + L Sbjct: 353 YQYIFINLKEQPDSIRNSLQVVIESKKK--KLLMFFNSKHVLKNDFFLEKDVLFHNFKLG 410 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID--HLGNRRIRSV 456 +GR+K N E L+ D +++ LI I G E D + L NRR ++ Sbjct: 411 PIGRLKINLKFGLN--EKKEELTSIDFTRILRYLIQIDKGFIENDIYEEQSLLNRRFNNI 468 Query: 457 GEMAENQFRVGLVRVERAVKERLSLGD--LDTLMPQDMINAKPISAAVKEFFGSSQLSQF 514 GE + L+ E K +S D + ++ + + N + + + S L Q+ Sbjct: 469 GEHLYSCLSDYLISKE-DSKYSVSKEDYIKNQMLFKKINNCRNAFYFLIRYLNKSSLCQY 527 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 +Q N LS + H R++S +GPGGL + E+RDVH + YG++CPIETPEG ++G++N+ Sbjct: 528 TEQANALSYLGHTRKVSIMGPGGLKNDNISLEMRDVHISTYGKICPIETPEGKSVGVVNN 587 Query: 575 LSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL- 633 LS+Y +TN LETPY V + VT+ IHYL+ EE Y IA A L ++G F+ Sbjct: 588 LSLYTRTNTLFQLETPYIFVKENFVTNIIHYLTPQEEKYYKIAHATEVLKKDGSFLNTKE 647 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 + CR VDY+++S+ Q+ S+ AS+IPFLEH+D NRALMG+NMQ+QAVP L Sbjct: 648 IYCRYLHSLITVDSKNVDYIEMSSGQITSLSASMIPFLEHNDGNRALMGSNMQKQAVPLL 707 Query: 694 RADKPLVGTGMERAVAVD-----SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 +K L+GTG+E + D + V + +I+ K N++ ++ + Sbjct: 708 NLEKSLIGTGIEGIIGRDFFNISKNLLLEKMTNENVFGISILKILKKENKNIIFSQFVDL 767 Query: 749 DI-----YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 I Y+ K+ SNQ T I+ + ++ G S EL+LG N+ V Sbjct: 768 FIKNHFLYSTIKHKNSNQKTDIDFKYVNKKNINIFENNIDNIGYSIKNNELSLGNNVLVG 827 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALS 863 F NG+ FEDSI++SER+V+++ F +IH++ + K E I + Sbjct: 828 FTSMNGHTFEDSIVISERIVRDNYFQSIHLEVYKTMEMYEKDSQEIIRNFLS------TD 881 Query: 864 KLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNG 923 LD G++++G V DIL+GK K + L+ + KL+ D S+R N Sbjct: 882 FLDVDGVIHLGTNVCTNDILIGK--EKRQLLLSEKNKLIV----------YDKSIRYKNK 929 Query: 924 VSGTVIDVQVFTRDGVEKDKRALEIE 949 G VI + F V+ +K + Sbjct: 930 KKGVVIQIAKFFDSLVDLNKHYITTS 955 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 146/400 (36%), Positives = 230/400 (57%), Gaps = 9/400 (2%) Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLF-SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 + + M + K++ + +L + S++ + + + L E+ + Sbjct: 1081 IRFKNMYREIYKRNKKNDFVLLNIKMSLSKVFFIDLKKKIPYSMEFLLKNFILQEMYILL 1140 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL--KIVKVYLAVKRRIQP 1062 +++ +Q + + ++ K + I + D ++VKV +A K IQ Sbjct: 1141 F--LYYIKEYNKQNFNVFENDQIFVQKKTKSINKKKDCLKNNYSLRMVKVVVACKHNIQV 1198 Query: 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 GDK+ GR+GNKGVIS+I +EDMPY +GTP+DIVL+PLGV SRMNIGQ+LE HLG+A Sbjct: 1199 GDKLTGRYGNKGVISRILSLEDMPYLRDGTPLDIVLSPLGVSSRMNIGQLLECHLGLAGV 1258 Query: 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 + K+ +++ V K R+++ Y ++ + +D +++ L +N+ G+PI Sbjct: 1259 ELSKKLQQIIQTYDIVGKSRKYLSMLYRNKKELLLLN---SLNDSQIICLFKNISHGIPI 1315 Query: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242 +TP+F+ A +I LL++ L ++ + DG TG + VTVGYMYM+KLNHL+D K Sbjct: 1316 STPIFNSANNFDIDNLLRISGLNIQSKVTIIDGITGVVLDNKVTVGYMYMMKLNHLIDHK 1375 Query: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT 1302 +H RSTG Y+++TQQ GK++ GGQR GEMEVWAL+AYGAAYTLQEMLT KSD R+ Sbjct: 1376 IHGRSTGPYNIITQQASKGKSRNGGQRLGEMEVWALQAYGAAYTLQEMLTFKSDSTISRS 1435 Query: 1303 KMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 +N + G +P +F +L E+R LG+ + + Sbjct: 1436 SFLQNFIRGK-TSRIDIPRTFKLLRDELRVLGMELNFIVK 1474 >UniRef50_A6NYC9 DNA-directed RNA polymerase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NYC9_9BACE Length = 1237 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 255/1380 (18%), Positives = 441/1380 (31%), Gaps = 251/1380 (18%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP-EGQYGLEAAFRSVFPIQS 61 +SY RI K + +D+ LL Q +S+QK++ + L R + +Q Sbjct: 2 FSYDPSNRILKVQKLAEEEVDL-GLLEYQKESYQKYLTETIYSDMEYLLQVMREL--LQV 58 Query: 62 YSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 ++E + G E + + +Y P+ K + + E Sbjct: 59 SQVDAEFRVGDLYCGNYK---NEVKKKSPSY-YPVYAKFTID-----------GAVFPNE 103 Query: 122 VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRG 181 V + IP M ++G NG RV++ Q+ + V + +DK + Sbjct: 104 VEVFRIPAMDEDGILNFNGDRRVLLMQMVAAERVSYAADKQTVSITTPRRN--------- 154 Query: 182 SWLDFEFDPKDNLFVRIDRRRKLPATIILRALN------------YTTEQILDLFFEKV- 228 + FD ++ ++ R K+P ++RA N +T+ IL F Sbjct: 155 --ISLMFDGTKDVTIKYGPRNKIPMHKLIRAYNAKEKVYDDPSKLFTSAYILSAFATDSA 212 Query: 229 -IFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL---EKDDVKL 284 E +++L + G+ + + R R + + + ++ Sbjct: 213 ATDEAIEDELDKLNIYATYSGDDYALGKTRDALNEALSLDRARGRILSRPVGPFEAGRRV 272 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHG 344 + + YI + + Y+ + L+ +L+ +G L + Sbjct: 273 DDEVLHYIHLHCINEIYVKAIPDVV----GYTLTQELVISFVPAGTHNNSRLQEALPEFA 328 Query: 345 PYI--------------SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESL------ 384 Y ETL + RPG P R E Sbjct: 329 DYSAIPQDSQVCIFMSSKETLTKEDVQFLYDVGAHHVDCKRPGSAPIRATFEEEVIGNYT 388 Query: 385 -----FENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 R+ V N + + I + Sbjct: 389 VRLGDIYGHNIPAGRFHDEWVCFY--NNPKFERTDMDHLNTHDLMALYSLCAFIKKNPEE 446 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPIS 499 + D D +++ + E+ N R L + +S L+ + +S Sbjct: 447 NFLLDKDFGLLKKVLAANELFSNAMREVLPDFVKHYSVSISRAISQNLLTEGKFAG--LS 504 Query: 500 AAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 K++ + NP++ + + L ++R + YGR+C Sbjct: 505 DMWKKYLWDKNYLDIANTINPIAVVAQ----TNHLVSDLHTSEIPEKMRLLSMGFYGRIC 560 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQA 619 P ETP G +G+ N+ ++ A+ + G L TPYR+V S +E Y+ AQ Sbjct: 561 PYETPSGKKLGITNTKAIGARI-KDGILTTPYRRVLKN---SNGEIESISQEITYMDAQ- 615 Query: 620 NSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRA 679 +E + DL++ + G R Sbjct: 616 ----EEAQFRIGDLLSLKKDGY------------------------------------RY 635 Query: 680 LMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNED 739 L M R P + V V ++ ++ + + V Sbjct: 636 LNTKVMARVPAPNNQVTVESVDAYTLDYVNAY-CEQHLSPTAALIPFAGSDDAVRVTYAT 694 Query: 740 EMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQN 799 M + + + S C N V R +G+L L Sbjct: 695 NMLKQSILVQGSQIPRVFTSMYRRCFNHS-----NTYVIRAKKDGWVEQIPMGKLQL--- 746 Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 ++ ED I + E V ++ Sbjct: 747 ------TYDDGTIED-IEICETSVTNQSVNFLNFH------------------------- 774 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 V G GD+LV E +P L A + + +D+ Sbjct: 775 -----------VKEGDHFKKGDVLV-DSAIAREGIYSPGVNLFAAYLAD-GYNYEDAVEL 821 Query: 920 VPNGVSGTV-IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 + + I + T +++ E + + + + E I + S+ A Sbjct: 822 SEYAANQFISISTETITHRM---HRQSNESIRVGTEYCYRFIPENGVIAKVSRQSKSDAR 878 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 + V L E+ ++ +LAE Sbjct: 879 CHSKDVLRSGK----HSGILYKI----ERNHKETRLAEYNA------------------- 911 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 +L R++ GDKMAGRH NKG S I +MP NG +DI+L Sbjct: 912 --------------HLLSFNRLRTGDKMAGRHSNKGTASIIRKNSEMPCFMNGRQLDILL 957 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 NP GVPSRMNIGQ E +LG A + + + ++ ++ +DL + K Sbjct: 958 NPCGVPSRMNIGQNFEAYLGFIAYLLDVYVESDPFNGATKGDIKLLMRYVWDLANNENAK 1017 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 S + + +R+ I++ G G L++ TG Sbjct: 1018 SVCSNYPMLPSTLHEQAIRR-------------HEAIRD--WAGCFNPDGTAYLWNPATG 1062 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARS---TGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 + E PVT G YMLKL H V+ K HAR+ YS +++QP G A+ GGQ+ GEME+ Sbjct: 1063 KCLENPVTFGVPYMLKLEHEVNHKFHARAGMLEEDYSQISKQPTEGSARGGGQKMGEMEL 1122 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPG--MPES---FNVLLKEI 1330 AL AYGA L E SD+V R ++ + G +P + F L+ + Sbjct: 1123 CALAAYGATDFLYETCNSMSDNVLDRVNTTLRTLNLPEYTQGGESVPHAVEMFRYFLETL 1182 >UniRef50_Q4QA33 DNA-directed RNA polymerase n=7 Tax=Trypanosomatidae RepID=Q4QA33_LEIMA Length = 1616 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 203/1310 (15%), Positives = 360/1310 (27%), Gaps = 310/1310 (23%) Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTT-EQILDLFFEKVIFEIRDNKLQMELVP 243 D+ K+ +V P + + LD F + M Sbjct: 457 DYLVPSKEQFWVNFAS---FPEMVKGARCALRNVDARLDHFRALEEQKEVGGYFIMNGGE 513 Query: 244 ERLR---GETASFDIEANGKVYVEKGR--RITARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 LR + + I + +V +G A IR + G+V+ Sbjct: 514 RILRALLMQRCNVPINIYREKFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVI- 572 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 + A + L+ +S +R+ T+ D +H + L+ Sbjct: 573 --FSFARKVVWHLPAPLLLNAMSTQSVSAVELQRLLTIGMPDGNHVARVEALLQHHRRKP 630 Query: 359 RLSALVEI------------YRMMRPGEPPTREAAESLFENL-----FFSEDRYDLSAVG 401 I Y A+ F R+ L + Sbjct: 631 YGDLRHFIDYITVLGRMYREYHQNSSTFHFLPLYAKGSTCQHDAWYGMFMVRRHVLPHLN 690 Query: 402 RMKFNRSLLREEIEGSGIL-------------SKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 L + +L D +I + ++L +G E D Sbjct: 691 SCDVATPDLAPDATAQKLLAWLSPALLAELDRKFDAMIAITRQLYLFIDGAVEHQGNDVP 750 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG-------------------DLDTLMP 489 + + +V ++ F V L R R RL+ D + M Sbjct: 751 AYQELFTVSQVLMGAFEVCLNRYMRGFVYRLARHLPAALFRRILSLRTLLPPVDAEDTMR 810 Query: 490 Q---------------------DMINAKPISAAVKEFF---GSSQLSQFMDQNNPLSEIT 525 Q ++ I+ +E F +S + N Sbjct: 811 QVRQFAEFCGRHGGSDPLDQLARLLVTGNINLDREEDFYCPQTSGWVVMAEHLNFYRFFE 870 Query: 526 HKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 R + G + EVR YG +C +++P+G + G++N LSV ++ Sbjct: 871 QLR---CVHRGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDCGVLNHLSVSTISSNSP 927 Query: 586 F------LETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE---EGHFVEDLVTC 636 L RK GV + + V L VE T Sbjct: 928 DAAMTAQLREIVRKAVPGVRSRATLSTVVDQLCETVPVWMEGELLGYLSPADAVEAAATL 987 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRAD 696 R + +L S+ V + R D Sbjct: 988 RERKALTLRSQVHVTGI--------------------------------------VRRKD 1009 Query: 697 KPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKY 756 + T VA S G+ + D R++ + L Sbjct: 1010 ASPLHTLEVVYVAPKSKD-----PAGLYVFYDCGRLMR--------------PVQRLESS 1050 Query: 757 TRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGEL-----------ALGQNMRV--- 802 R + P V +G + +A PS L + G N+ Sbjct: 1051 VRKDAT--HLPFPLVFIGTWEQSWLDIAAVPSDPLDAVVQLNRKYEYMEQNGTNLISLTS 1108 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 A +P+ +N L + ++ T + ++ + + Sbjct: 1109 ATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRKEAKLFRT----YCPQRYISRTLPM 1164 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 + + AI D+ D+ Sbjct: 1165 DYYGLD-------------------------DVNLGVNAVIAILAYTGYDMDDA------ 1193 Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 +I+ R + +I K + KD L R A L A Sbjct: 1194 ----VIINSTAAQRGMLTAGVTVAKIVTASGKGSDKDDVFVFHNL-LSTGERFTAELEAN 1248 Query: 983 GVEAEK----LDKLPRDRWLELGLTDEEKQN-----QLEQLAEQYDELKHEFEKKLEAKR 1033 G+ ++ LD DR + + ++E++ ++ +E+ + K Sbjct: 1249 GLPPKRANASLDAFSFDRDHKYPGLRDNNDVYCCAKRVERVDPFTNKAVYEYTRHHATKW 1308 Query: 1034 RKITQGDD----------LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083 R +G+D + V + + R GDK + RHG KG + Sbjct: 1309 RHFDKGEDAWVQQVIPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSH 1368 Query: 1084 DMPY-DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLR 1142 D+P+ +G D+++NP PS +G + M Sbjct: 1369 DLPFATASGITPDVIINPHAFPS---------------RMTVGMVLEIM----------- 1402 Query: 1143 EFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLG 1202 +GA + +D S +S + I E L Sbjct: 1403 -----TAKVGAIEGRFIDNSAWSTVDEQPRVA------------------ELIGEALVKA 1439 Query: 1203 DLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV-----TQQ 1257 G+ L DG +GE+ + V +G +L H+V DK AR+ T Q Sbjct: 1440 GYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQARARTDAHTYRAVTKTGQ 1499 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTK---------- 1303 P+ G+ + GG R GEME L ++G + + + L SD + R Sbjct: 1500 PVKGRKRHGGVRVGEMERDGLLSHGISEVVVDRLLHVSDKTKAFICPRCGSLLSLYERHA 1559 Query: 1304 -------MYKNIVDG-----NHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + G + +P+ + E+ S+GI + L+ Sbjct: 1560 TEYGTWRTCRFCGAGADESTDSIAMVEIPQVLRLWAAELTSIGIRVVLKT 1609 >UniRef50_Q17U53 DNA-directed RNA polymerase, putative n=1 Tax=Solanum bulbocastanum RepID=Q17U53_SOLBU Length = 1018 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 151/1051 (14%), Positives = 317/1051 (30%), Gaps = 199/1051 (18%) Query: 13 KDFGKRPQ--VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY 70 ++F K+ + ++S Q+DS+ FI YG++ F SV I Sbjct: 69 RNFCKKASAGFFEKYGVISHQIDSYNDFIR------YGIQRVFDSVGEIH---------- 112 Query: 71 VSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM----GE 126 EP +D + +++ K+ L + A E E+ + + Sbjct: 113 -----VEPGYDPSKKGEGDWKHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLNLWPRHAR 167 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 + MT + ++ + K++ + + ++D Sbjct: 168 LQNMTYSARIIV-----------------------ETHVFTKKLVRSDKFKTGVEQFVDK 204 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 E +D V I R +P + + D F+ + I ++ + E++ Sbjct: 205 ECVMEDKRDVFIGR---IPVMVNSELCWMSGADRPDCEFDHGGYFIVKGAEKIFIAQEQI 261 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 + + V G + +++ E + I+ + ++ A+ I Sbjct: 262 CLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEAKALSVYFFAEMPIWVLF 321 Query: 307 GELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEI 366 L +++ E+ + + + I +D D + AL + Sbjct: 322 FALGVSSDREVVDLIDVDIKDTNIINILVASIHDADKN--------CEDFRKGKKALAYV 373 Query: 367 YRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDII 426 R+++ + P +E+ E + F + Sbjct: 374 DRLVKSCKFPPQESVEECIKEYLFPN----------------------LSGLKQKARFLG 411 Query: 427 DVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG---D 483 ++K L+ G+ +VD+ D N+R+ GE+ E + RV + ER + + L D Sbjct: 412 YMVKCLLLSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHVKHAERRMVKALQRDLCGD 471 Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQ-------------FMDQNNPLSEITHKRRI 530 + ++A I+ + F + + + NPL R+ Sbjct: 472 RQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRK- 530 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 +T + R HP+H+G+VC + TP+G N GL+ +L+ + + P Sbjct: 531 ---TRQQVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVST--TVLKP 585 Query: 591 YRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESSLFS 646 + ++ SA + + FV L R + E Sbjct: 586 LLETLFRCGMQKLVDDSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRQRRRNEVPHQL 645 Query: 647 R-----------------------DQVDYMDVS---TQQVVSVGASLIPFLEHDDANRAL 680 QV+ ++ S ++ L + + Sbjct: 646 AHTLAIPPGICYLLPTHVPVTLTEAQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNI 705 Query: 681 MGANMQ-------------RQAVPTLRADK---PLVGTGMERAVAVDSGV---------- 714 + + + ++ G+E + D Sbjct: 706 KALKDGMKGGDYGFQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCEL 765 Query: 715 ---TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 + G++ + + + + E + + I + R + NT P Sbjct: 766 DMSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQ-AIGFSTVNPNARVDTNTHQLYYPQR 824 Query: 772 SLGEPVERGDV------LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQE 825 L + + E GQ VA GYN EDS++++ ++ Sbjct: 825 PLFGTMLSDSLGKPKCARHQKGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLER 884 Query: 826 DRFTTIHIQELACVSRDTKLGPEEIT------ADIPNVGEAALSKLDESGIVYIGAEVTG 879 F + H++ + + ++ + LD+ G +IGA + Sbjct: 885 GMFRSEHVRSYKAEVDNKEAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQS 944 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 GDI++GK G D S+++ + G V V + D Sbjct: 945 GDIIIGKYAESGA----------------------DHSVKMKHTERGMVQKVLLSANDDG 982 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 + + + K L AG Sbjct: 983 KNFAVVSLRQVYEKSVIIKKPYYVFGELFAG 1013 >UniRef50_Q54IZ9 Ddi rpc2 intein n=1 Tax=Dictyostelium discoideum RepID=RPC2_DICDI Length = 1608 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 145/1138 (12%), Positives = 290/1138 (25%), Gaps = 201/1138 (17%) Query: 230 FEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 +I +EL+P E G + + I+ + Sbjct: 643 IKIIQELKSIELLPLLNNNEKLITISRIIGSIDKIGSNKQNEPIIQYQFNLISDFDQFLK 702 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 + + Y + ++ + Q ++ + Y + Sbjct: 703 DLQYLGFINPIYKLNEEQQQQQQQKIDHQQ---QQQQQVEQQQKSIIIDFIGSSFGYFIQ 759 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 +L + S + + + ++ + + Sbjct: 760 SLLNEKNWIEKSNNQFVKKEFLSSFISNVNRIQFNIIEEINQQNNDSNFKILLNYKQQKQ 819 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH------LGNRRIRSVGEMAENQ 463 + E E ++ D+ I +K L + N + ID + N ++ ++ + Sbjct: 820 QQNEKEERAVVDHDNEIFNIKSLQILLNQFNVISSIDFEESNLIIINSSLKKFIDLINIK 879 Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNP--- 520 F L ++E L+ + + + +F ++ +N+ Sbjct: 880 FNQKLNNQIIQIREYLNYINYNNNNNNNEEINIKKKDF--GYFKKLKIK----RNSFEIE 933 Query: 521 LSEITHKRRISALGPGGLTRERAGFEVRDVHPT-HYGRVCPIETPEGPNIGLINSLSVYA 579 + +I T E D H G V N GL+ + ++ + Sbjct: 934 IEKIEQLNYQDCPEISDFTTES------DYHSMISNGFV-------SHNCGLVKNFALMS 980 Query: 580 QTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG--NYVIAQANSNLDEEGH----FVEDL 633 E P ++ + +I ++ E N + N + + FV L Sbjct: 981 HVTTD-DSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIHNSPDYFVTTL 1039 Query: 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTL 693 R G F + T V G L + D R + L Sbjct: 1040 RKMRRAGRIREFVSICKNKAQ-QTISVACDGGRLCRPVIIVDDQRPRLTQEHIEDLKDGL 1098 Query: 694 RADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNL 753 R R G+++Y+D + Sbjct: 1099 RTFDDF-------------------IREGIIEYLDVNEEN-------------------- 1119 Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 + + L P T LG +P+ +N Sbjct: 1120 ------DSFLAWREAAIQP------WTTHLEIEPFTMLG-------CVAGLIPYPHHNQS 1160 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYI 873 + ++ ++R L + P + L+ + Sbjct: 1161 PRNTYQCAMGKQAIG----AIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLNWYKLPA- 1215 Query: 874 GAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQV 933 A+ D++D+ + + V Sbjct: 1216 ------------------------GHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIV 1251 Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 + K + + + K L Sbjct: 1252 LKKQVTSIKKHGNDTSDRIFP------------------------PTPNDLRQPKYGLLD 1287 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 D + G ++ Q + + + + + K + I KV Sbjct: 1288 SDGIAKPGELAQKGQILVNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVL 1347 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 L Q KM R + Sbjct: 1348 LTSGDDEQLLIKMLMRST--------------------RRPE------------------ 1369 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 + G K + +QE + + ++ E++ Sbjct: 1370 --LGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGK 1427 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 + G F G + I ++L G+ + G TGE + G ++ Sbjct: 1428 AGVLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQ 1487 Query: 1234 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1293 KL H+V DKMHAR+ G +T+QP G+A+ GG R GEME L YGA+ + E L + Sbjct: 1488 KLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMI 1547 Query: 1294 KSDDVN----------GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 SD G + +P + +L +E++++ I L+ Sbjct: 1548 SSDRFTVYACKNCGFLGYEGYCQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRLKL 1605 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 71/508 (13%), Positives = 153/508 (30%), Gaps = 57/508 (11%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F + + K + + L Y + D + +D + Sbjct: 50 RGLVKQHIDSFNFFINVEMKKIVKANERLTAENDPSYFVRFTDINVGSPTSTEDNLDSVQ 109 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR--------------- 247 P LR + Y+ +++ + + I + + +P LR Sbjct: 110 LTPQRCRLRDMTYSAPIFVNIEYTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMA 169 Query: 248 -------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD 300 F + KV + + R I +++ + V + Sbjct: 170 ALGECPMDPGGYFIVRGQEKVILNHEQLSKNRIIIEMDSKGLPSASVT-SSTHERKSRTG 228 Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLRVD 354 ++ + + + L G + + + ++ E + Sbjct: 229 VTLKNEKLYLKHNTFGEDIPVAIVLKGMGVETDQEMAQLVGSDDVFLNAITPSLEECQKC 288 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 + AL + ++ P + E R L+ V Sbjct: 289 GVHTAAQALDYLGSRIKVFRRPYGVQNKKTKS----EEARDILAGVVLNH------VPVR 338 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 + L + +++++I K +DD D+ GN+RI G++ F + + Sbjct: 339 RYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSE 398 Query: 475 VKERLSL-----GDLDTLMPQDMINAKPISAAVKEFFGSSQL---SQFMDQNNPLSEITH 526 +K+ + + L +I I+ S Q M+++ ++ Sbjct: 399 LKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLSR 458 Query: 527 KRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 IS +G + R R + P+ +G +CP +TPEG L Sbjct: 459 LSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC-----LHPDTII 513 Query: 582 NEYGFLETPYRKVTDGVVTDEIHYLSAI 609 + P R++ DG + ++ Sbjct: 514 TMSNGQQKPIRQLKDGDSIITLDPITME 541 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 59/391 (15%), Positives = 113/391 (28%), Gaps = 37/391 (9%) Query: 2 VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS 61 + K + + + P + L+ +DSF FI + + + Sbjct: 27 SKLTDDIKPVEEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTAEN---- 82 Query: 62 YSGNSELQYVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYE----- 106 + +++ +G P Q C++R +TYSAP+ V + + Sbjct: 83 -DPSYFVRFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQIISK 141 Query: 107 ------------REAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPG 154 R + K EQ +GE P M G F++ G E+VI++ S Sbjct: 142 RDVHIGNIPIMLRSSNCVLSKKTPEQMAALGECP-MDPGGYFIVRGQEKVILNHEQLSKN 200 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 K S V + R S + +P I+L+ + Sbjct: 201 RIIIEMDSKGLPSASVTSSTH---ERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGMG 257 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 T+Q + + +E + A ++ V + Sbjct: 258 VETDQEMAQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQNKK 317 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM-ELSLDLLAKLSQSGHKRI 333 + E+ L V + ++ + +I M L G+KRI Sbjct: 318 TKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRI 377 Query: 334 ETLFTNDLDHGPYISETLRVDPTNDRLSALV 364 E + + + A+ Sbjct: 378 ELSGQLISLLFEDCFKKFQSELKKSVDQAIA 408 >UniRef50_B9FCT0 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=B9FCT0_ORYSJ Length = 1185 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 148/1058 (13%), Positives = 301/1058 (28%), Gaps = 197/1058 (18%) Query: 6 TEKKRIRKDFGKRPQVLDVP-----------------YLLSIQLDSFQKFIEQDPEGQYG 48 + K R + + P + +P L+S Q++S+ +F+ G Sbjct: 62 DDGKGKRDSYAQIPVDMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSH------G 115 Query: 49 LEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYERE 108 L+ F S+ + EP +D G ++ +++L Sbjct: 116 LQELFDSLGEVT---------------VEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFW 160 Query: 109 APEGTVKDIKEQEVYM----GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 + DI EQ + + + MT + + +V + Sbjct: 161 SHGC---DIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVYSM----------EKSDKAK 207 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 + K Y II + ++ I R LP ++ + D Sbjct: 208 TGNDKFGYKRNII-------------NETYYINIGR---LPVMVMSNLCWLHKLKESDCQ 251 Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 F+ + + ++ + E+ + V R +I+ ++ + + Sbjct: 252 FDSGGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNE- 310 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLF--TNDLD 342 D S G++I + + ++ + G + +F N D Sbjct: 311 ------------------DASGGKIISISFLYANMPIWLMFFALGISSDKDIFDVINMED 352 Query: 343 HGPYISETL---------RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSED 393 + T+ + A + +++ + P E + F Sbjct: 353 CDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFP-- 410 Query: 394 RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + ++K L+ GK + D+ D N+R+ Sbjct: 411 --------------------SISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRL 450 Query: 454 RSVGEMAENQFRVGLVRVERAVKERLSLG---DLDTLMPQDMINAKPISAAVKEFFGSSQ 510 GE+ + R + ER + + L + + ++A I+ + F + Sbjct: 451 DLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGS 510 Query: 511 LSQ-------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGR 557 + + NPL I+ R+ + + R +P+++G+ Sbjct: 511 WCHPYKRNERCAGIVATLRRTNPLQMISDLRK----TRQRVAYAGKAGDARYPNPSYWGK 566 Query: 558 VCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIA 617 +C + TP+G N GL+ +L+V A + P +++H + E Sbjct: 567 LCFMSTPDGENCGLVKNLAVTATVSSRVAP--PLIDRFISCGMNKLHEIPTEEVPRMDKI 624 Query: 618 QANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 N + + FV L R G + D +V S ++ L Sbjct: 625 FLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQR-EVRVFSDAGRILRPLLV 683 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 + + + L + + G+E + S Sbjct: 684 VENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFES------EEEAP 737 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE 793 + I + T + R D A E Sbjct: 738 MVKMNKAEDVFNVKRKIGGEV-----SGYTHLIADCIGRSEYTFGRKDDFA------RPE 786 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK--------L 845 GQN VA G+N EDS++++ ++ F T H + + Sbjct: 787 YFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLK 846 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 ++I + LD+ G+ Y+GA + GDI++GKV+ G Sbjct: 847 MKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESG-------------- 892 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 +D S+++ + G V V + D + + K S Q Sbjct: 893 --------EDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQ 944 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 G + P Sbjct: 945 KGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPG 982 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 73/481 (15%), Positives = 135/481 (28%), Gaps = 97/481 (20%) Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 G+ + + + A+ + + +DS + + + + F E + + Sbjct: 777 GRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFRTEHFRNYKAEVENK 836 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 +LK K ++Q + ++D L D +G + Sbjct: 837 GGPGGNKRLKMKDKIDFGKMQ------------------SKRGRVDNLDDDGLPYVGASL 878 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 + + +++E ++ H + K K V Sbjct: 879 QSGDIVIGKVSESGED--HSIKLKHTEKGMVQRVLLSANDEGKNFAVVT----------- 925 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 P + Sbjct: 926 ---------------LRQVRSP----------------------------CLGDKFSSMH 942 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 G K + QE + + E G Sbjct: 943 GQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYA 1002 Query: 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMH 1244 F A I + L G + +GRTGE+ + +G + +L H+ +DK+ Sbjct: 1003 TPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVK 1062 Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK- 1303 R+TG +T+QP+ + +FGG +FGEME L A+GAA L E L + SD Sbjct: 1063 FRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQ 1122 Query: 1304 ----------------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + + +P +L +E+ S+GI + E Sbjct: 1123 TCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRFET 1182 Query: 1342 E 1342 E Sbjct: 1183 E 1183 >UniRef50_B8R1A0 DNA-directed RNA polymerase n=2 Tax=Volvox carteri RepID=B8R1A0_VOLCA Length = 652 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 169/574 (29%), Positives = 262/574 (45%), Gaps = 105/574 (18%) Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 ++++ ++ + + + SR L T + L + V G + Sbjct: 92 NNKKLPKKLL---SYPKNYSTPSRKLFLKYNLETYR----RSNQDTCLIQKPAVKEGDWI 144 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 GD+L + G +L ++ A + + +D+ L ++ ++ ++T Sbjct: 145 ETGDLLADSASSVG-GELAIGHNIIVAYMPWEGYNYEDAIL-----INERLVYEDLYTSV 198 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSE----ELQILEAGLFSRIRAVLVAGGVEAEKLDK-- 991 +E+ + ++ +Q +++ + E+ L+ ++I + + G + K+ Sbjct: 199 HIERYEVLTTDTKLGSEQITREIPDTNENEISHLDKNGIAKIGSWVEEGDILVGKVTPFN 258 Query: 992 ----LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 P+ + L + + L + + K++ D V+ Sbjct: 259 IKTLTPQQKLLYKIFNKQLSATKDSSLRAPKGIKANVINVNILKKQKIELNNKDKKKIVI 318 Query: 1048 KI------------------------------------------VKVYLAVKRRIQPGDK 1065 V +YLA KR+IQ GDK Sbjct: 319 TKKAKINLLTQQTISVQNNQNQNTNNTNGRRRKREISNTYAPSYVHIYLAEKRKIQVGDK 378 Query: 1066 MAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIG 1125 MAGRHGNKG+IS+I P +DMP+ +GT VDIVLNPLGVPSRMN+GQI E LG+A + +G Sbjct: 379 MAGRHGNKGIISRILPRQDMPFLPDGTSVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLG 438 Query: 1126 DKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATP 1185 + + GAD + LS D Sbjct: 439 EHYKIPPFDEMY--------------GADASRSFVLSKLYDARKKTG------------- 471 Query: 1186 VFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHA 1245 L L D G+IRL+DGR E F++ VTVG Y+LKL H+VDDK+HA Sbjct: 472 ------------LNWLFDPNHPGKIRLFDGRNSECFDQTVTVGIAYVLKLVHMVDDKLHA 519 Query: 1246 RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY 1305 RSTG YSLVTQQPL G+++ GGQR GEMEVWA+E YGAA+ L EMLT+KSDD+ GR ++ Sbjct: 520 RSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWAIEGYGAAFVLSEMLTIKSDDMTGRQNLW 579 Query: 1306 KNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 KN+++ N G PESF VL+ E+++L ++I L Sbjct: 580 KNLIENNDIS-LGSPESFKVLVCELQALCLDIGL 612 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 109/338 (32%), Positives = 158/338 (46%), Gaps = 49/338 (14%) Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 YNL Y RSNQ+TC+ Q P V G+ +E GD+LAD S+ GELA+G N+ VA+MPW GY Sbjct: 118 YNLETYRRSNQDTCLIQKPAVKEGDWIETGDLLADSASSVGGELAIGHNIIVAYMPWEGY 177 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N+ED+IL++ER+V ED +T++HI+ ++ DTKLG E+IT +IP+ E +S LD++GI Sbjct: 178 NYEDAILINERLVYEDLYTSVHIERYEVLTTDTKLGSEQITREIPDTNENEISHLDKNGI 237 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 IG+ V GDILVGKVTP LTP++KLL IF ++ S KDSSLR P G+ VI+ Sbjct: 238 AKIGSWVEEGDILVGKVTPFNIKTLTPQQKLLYKIFNKQLSATKDSSLRAPKGIKANVIN 297 Query: 931 VQVFTRDGVEKDKRALEIEE---------------------------------------- 950 V + + +E + + + Sbjct: 298 VNILKKQKIELNNKDKKKIVITKKAKINLLTQQTISVQNNQNQNTNNTNGRRRKREISNT 357 Query: 951 -------MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + L + +K + G I +L + D D L L Sbjct: 358 YAPSYVHIYLAEKRKIQVGDKMAGRHGNKGIISRILPRQDMPF-LPDGTSVDIVLN-PLG 415 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 + N + + + G D Sbjct: 416 VPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMYGAD 453 >UniRef50_B2X1Z1 Beta subunit of RNA polymerase 1 n=1 Tax=Oedogonium cardiacum RepID=B2X1Z1_OEDCA Length = 672 Score = 361 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 178/663 (26%), Positives = 288/663 (43%), Gaps = 79/663 (11%) Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL--PAT 207 H FF +S +I + + F+ KL P Sbjct: 11 HEQKNQFFSDFTELQRNSFLNFLKNGLIEELSNRNPIRNHKNNIEFIFYPEYYKLKRPKW 70 Query: 208 IILRALNYTTEQILDL-----FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 + ++ + +L +K +I+ + + +P L + F I +V Sbjct: 71 NVRESILLGKSYVAELYVPAQLMDKNNKKIQLKWVLIGNLP--LMTKRGYFIINGAARVI 128 Query: 263 VEKGRRITARHIRQLEKD-----------DVKLIEVPVEYIAGKVVAKDYIDESTGELIC 311 + + R + + + ++++ + + Sbjct: 129 MNQIIRGPGIYYSEAIHQYDSFEKKNILMNQSFSRYYADFVSLRGYWLRLSVDKDQFFWA 188 Query: 312 AANMELSLDLLAKLSQSGHKRIETLFT--------------NDLDHGPYISETLRV---- 353 + LL L G + + L+ Sbjct: 189 EMKKTPKIPLLWFLLAIGLNERLLFRYISNPKRLLHNLHNSLKSKTQLALIKKLQKLQHI 248 Query: 354 -----DPTNDRLSALVEIYRMMRPGEPPT------------------------------- 377 + + ++ + T Sbjct: 249 QLNVSNNIEKKQKNKTHTIERVQKNDTHTLYQYNFLPDSSLMAWDLISKKLVKKKKMSIL 308 Query: 378 --REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDI 435 +E F + YD+ +GR+ N+ +L+ D++ L+ + Sbjct: 309 KSQEQTRKWLFQRFMNPRSYDIGTIGRLALNKKFNLSISTKKHVLTPYDLLFATDYLMKV 368 Query: 436 RNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINA 495 G +DDIDHL NR++R+ E+ + Q +GL+R+E+ +K+RL+ + + +I Sbjct: 369 EKGLKNLDDIDHLQNRKLRTASEIIQIQIGIGLIRLEKYIKDRLNQIKVFP-KIESLITT 427 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 K +++A+ EFFG+S LSQFMDQ NPL+EITHKRR+++LGPGG+T++ A +R +HPTHY Sbjct: 428 KSLNSALTEFFGTSPLSQFMDQINPLAEITHKRRLTSLGPGGITKDNATMIIRGIHPTHY 487 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE--IHYLSAIEEGN 613 GR+CP+ETPEG N GL+NS++ YA+ N G +ETP+ KV G V I +LSA +E Sbjct: 488 GRICPVETPEGKNAGLVNSITTYAKINSSGLIETPFYKVYKGQVMKNLGIFFLSADDEEQ 547 Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 A+ NL G ++ + R K FSR+QV YM +S Q++S+ SL+PF EH Sbjct: 548 INTVAADINLSAFGFLPKNYIPGRKKDNFIRFSRNQVHYMSISPIQMISIATSLVPFFEH 607 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 DDANRALMGANMQRQAVP +R +P+VGTG+E DSG ++ GG+V YV A +I+ Sbjct: 608 DDANRALMGANMQRQAVPLIRPKRPIVGTGVEIRSVADSGHIIESRTGGIVSYVSAKKII 667 Query: 734 IKV 736 + Sbjct: 668 VHT 670 >UniRef50_B0ERH0 DNA-directed RNA polymerase n=2 Tax=Entamoeba RepID=B0ERH0_ENTDI Length = 1106 Score = 358 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 120/994 (12%), Positives = 273/994 (27%), Gaps = 128/994 (12%) Query: 148 QLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS-WLDFEFDPKDNLFVRIDRRRKLPA 206 G+ + + + + + Y G L + ++P Sbjct: 51 MELSCTGISIEKPRYNGLPLFPYMCRSAALTYSGKIRLTITIKENETSKTIEVDGGEIPI 110 Query: 207 TIILRALNYTTEQI--LDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVE 264 + +E I + + + + LR + A + Sbjct: 111 MVGTSKCWIGSEYITPEERINIREDPHEIGGYFIINGIERYLRM-----IVYAKANHPLA 165 Query: 265 KGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAK 324 R K + + + + + E + ++ Sbjct: 166 VIRPSWTNKGAHFTKYGIIIRCMREDITTLTNTLHFLDNGKVTLRFIFKKQEFFIPVVLL 225 Query: 325 LSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP---GEPPTREAA 381 L G +F T+ ++ ++A + R T E Sbjct: 226 LRVYGGMSDREIFELI---------TMNNYENSNLVNAAEMLVRRENGSPLNGLNTPEQV 276 Query: 382 ESLFENLFFSED--RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGK 439 S + F ++ + K S D +I +++KL + +G+ Sbjct: 277 LSYIGSKFRLIMDSTEGVNDIELGKRVLEEFCLVHLSSYSEKSDLLIFMLQKLFALVHGE 336 Query: 440 GEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE-----------RAVKERLSLGDLDTLM 488 + + +D ++ + G + + + + + + VK+ + + L Sbjct: 337 IDEEGVDTPMSQGVLLPGHLYQTVIKEEIQNILSKARLFILKDLKDVKKGSKITERVYLQ 396 Query: 489 PQDMINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISALG 534 AK +K F + S ++ N +H ++ Sbjct: 397 RILSNVAKSFGTRIKSFISTGNFETSSTTDLQQTNGFSITAERLNHSRFTSHF---VSVH 453 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTN--EYGFLETPYR 592 G +R + P +G +CP+ TP+G GL+N +V + N ++ E Sbjct: 454 RGAFYTTMKTTSIRKLVPEAWGFMCPVHTPDGAPCGLLNHFAVSCRINARKHPLPEQKII 513 Query: 593 KVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE------EGHFVEDLVTCRSKGESSLFS 646 + + ++ Y+ N + FV+ L R+ + + Sbjct: 514 DLCTELGMVSTQFMKLPSI--YIPVLLNGKVIGKVSPHEINSFVQQLRYERAIYNPKIPN 571 Query: 647 RDQVDYMD------VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV 700 ++ Y D + ++ +I + H + ++ + D Sbjct: 572 TLEIGYCDGYLQDGYHALYLNNLPGQMIRPVIHRATGNIVNIGPYEQVFLDIKCGDSIEG 631 Query: 701 GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSN 760 E S + +++ + + ++ + + +M GI L+ RS+ Sbjct: 632 MNNAEYE--EISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIP--ALSNKYRSD 687 Query: 761 QNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSE 820 P S+ + A E G N VA + + GY+ ED++++ + Sbjct: 688 TKLLWLHYPQRSICQ-------CALMEPFGFNEYPTGANAIVAVISYTGYDMEDALIIKK 740 Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 ++ + E + I + GE LD+ G+ G Sbjct: 741 SAIERGFGHGSQYKAYKVDFEKEGEKNEMFS-GITSSGEIFDEHLDDDGLPRPGEIFENS 799 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 I G+ + +V G G + V++ D ++ Sbjct: 800 PIYSHIDKITGKIKG-----------------------KVLMGERGYIESVRIVGGDNID 836 Query: 941 ---KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 + K S Q L + + + + P Sbjct: 837 SGLQKAVVRVRYNRTPVIGDKFSSRHGQKGTLSLHYQEKDMPFTESGMTPDIIINPHAFP 896 Query: 998 LELGLT--DEEKQNQLEQLAEQYDEL--------------------KHEFEKKLEAKRRK 1035 + + E +++ L +Y + K+ + Sbjct: 897 SRMTIAMLVESMASKVGALKGEYQDATPFKFDEENTAVDYFGKQLLKYGYNYYGSEPLYS 956 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGR 1069 G++L + V Y + Q DK R Sbjct: 957 GIYGNELQSDIYIGVVYYQRLVH--QVKDKYQVR 988 Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 110/826 (13%), Positives = 206/826 (24%), Gaps = 172/826 (20%) Query: 579 AQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEG-------NYVIAQANSNLDEEG-HFV 630 ++ E +L+ V T ++S + + F Sbjct: 387 SKITERVYLQRILSNVAKSFGTRIKSFISTGNFETSSTTDLQQTNGFSITAERLNHSRFT 446 Query: 631 EDLVTCRSKGESSLFSRDQVDYM------DVSTQQVVSVGASLIPFLEHDDANRALMGAN 684 V+ + + + + + Sbjct: 447 SHFVSVHRGAFYTTMKTTSIRKLVPEAWGFMCPVHTPDGAPCGLLNHFAVSCRINARKHP 506 Query: 685 MQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ------YVDASRIVIKVNE 738 + Q + L + +V T + ++ V K G V +V R + Sbjct: 507 LPEQKIIDLCTELGMVSTQFMKLPSIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAIYN 566 Query: 739 DEM-YPGEAGIDIYNLTKYTRS---NQNTCINQMPCV--SLGEPVERGDVLADGPSTDLG 792 ++ E G L + N P + + G V G G Sbjct: 567 PKIPNTLEIGYCDGYLQDGYHALYLNNLPGQMIRPVIHRATGNIVNIGPYEQVFLDIKCG 626 Query: 793 ELALGQN--------------MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 + G N + P+ N + ++ ++ + Sbjct: 627 DSIEGMNNAEYEEISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIPALSNKY-- 684 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 R A + P G + Sbjct: 685 --RSDTKLLWLHYPQRSICQCALME-------------------------PFGFNEYPTG 717 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 + A+ D++D+ + + +E+ + +K Sbjct: 718 ANAIVAVISYTGYDMEDAL---------------IIKKSAIERGFGHGSQYKAYKVDFEK 762 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 + + I + L D G + Sbjct: 763 EGEKNEMFSGITSSGEIFD------------EHLDDDGLPRPGE------------IFEN 798 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 + +K + K+ G+ ++IV GD + K V+ Sbjct: 799 SPIYSHIDKITGKIKGKVLMGERGYIESVRIVG-----------GDNIDSGL-QKAVVRV 846 Query: 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEV 1138 Y+ D SR G K L Q++ Sbjct: 847 R-------YNRTPVIGD------KFSSR-----------------HGQKGTLSLHYQEKD 876 Query: 1139 AKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVF----DGAKEAE 1194 E + ++ E M KG F + Sbjct: 877 MPFTESGMTPDIIINPHAFPSRMTIAMLVESMASKVGALKGEYQDATPFKFDEENTAVDY 936 Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 + L G LY G G + + + +G +Y +L H V DK RSTG S+V Sbjct: 937 FGKQLLKYGYNYYGSEPLYSGIYGNELQSDIYIGVVYYQRLVHQVKDKYQVRSTGPISIV 996 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKMYKNIVD 1310 T QP+ G+ + GG RFGEME +L A+G + + + L SD V + I Sbjct: 997 THQPIKGRKRGGGIRFGEMERDSLVAHGTSMLVHDRLFECSDKCYHYVCTKCGSICTIKR 1056 Query: 1311 GNH--------------QMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +P F L E+ ++ + + L+ + Sbjct: 1057 SKEYDKMICQSCGPTSIVKKIQIPYVFRYLAAELSAMNVRLNLKVD 1102 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 60/425 (14%), Positives = 132/425 (31%), Gaps = 63/425 (14%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD- 81 ++ L +SF F+E+ E L+ + + + EL + +P ++ Sbjct: 10 ELKELTRAHTESFNYFLEKGKEDI--LKYMKKYKIIKKDSTELMELSCTGISIEKPRYNG 67 Query: 82 ----VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN---- 133 C+ +TYS +R+ + + E K EV GEIP+M Sbjct: 68 LPLFPYMCRSAALTYSGKIRLTITIKENET---------SKTIEVDGGEIPIMVGTSKCW 118 Query: 134 ----------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVL 171 G F+ING ER + ++ + + ++ Sbjct: 119 IGSEYITPEERINIREDPHEIGGYFIINGIERYLRMIVYAKANH-PLAVIRPSWTNKGAH 177 Query: 172 YNARIIPYRGSWLDF-------EFDPKDNLFVRIDRRR---KLPATIILRAL-NYTTEQI 220 + I R D F + +R ++ +P ++LR + +I Sbjct: 178 FTKYGIIIRCMREDITTLTNTLHFLDNGKVTLRFIFKKQEFFIPVVLLLRVYGGMSDREI 237 Query: 221 LDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKD 280 +L +N + +R E S N V R I + Sbjct: 238 FELI----TMNNYENSNLVNAAEMLVRRENGSPLNGLNTPEQVLSYIGSKFRLIMDSTE- 292 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 V IE+ + + +L+ +L + ++ + G + Sbjct: 293 GVNDIELGKRVLEEFCLVHLSSYSEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLL 352 Query: 341 LDHGPYISETLRVDPTNDRL-SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSA 399 H + +T+ + + L A + I + ++ + ++ + + + + + Sbjct: 353 PGH---LYQTVIKEEIQNILSKARLFILKDLKDVKKGSKITERVYLQRILSNVAKSFGTR 409 Query: 400 VGRMK 404 + Sbjct: 410 IKSFI 414 >UniRef50_B9G6G0 DNA-directed RNA polymerase n=5 Tax=Oryza sativa RepID=B9G6G0_ORYSJ Length = 1150 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 178/594 (29%), Gaps = 141/594 (23%) Query: 787 PSTDLGELALGQNMRVA-FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 P+T VA PW+ +N + ++ ++ + + L Sbjct: 645 PATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFHL 704 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 T P V A SK + A+ Sbjct: 705 Q----TPQTPIVRTATYSKYCMDEFP-------------------------SGTNAIVAV 735 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQ 965 D++D+ + + V + +F + ++ ++ + Sbjct: 736 LSYTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLSAKSRDNVTEFFC---------KS 786 Query: 966 ILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH-E 1024 L + I + D +G + ++ + Sbjct: 787 NLSRDTTAAIES-----------------DGLPRIGENIFPNEQYYSVCNNLTGTVRPIK 829 Query: 1025 FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIED 1084 + A + L+ + L R GDK + RHG KGV S++ P D Sbjct: 830 LKGSEPAAIDYVAVNGTNFKDRLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDID 889 Query: 1085 MPYDEN-GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143 MP+ N G D+++NP H + I + ++ Sbjct: 890 MPFSANTGMRPDLIINP---------------HAFPSRMTIAMLLESI------------ 922 Query: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203 A G+ + +D + F+ R + E+ +L Sbjct: 923 ----AAKAGSLKGKFIDATPFASSVKER----------------SNSIVDELGPMLASYG 962 Query: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263 G LY G G + + + +G +Y +L H+V DK R+TG +T+QP+GG+ Sbjct: 963 FNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQPIGGRK 1022 Query: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK---------------- 1303 GG RFGEME AL A+GA+Y L + L SD DV Sbjct: 1023 YGGGIRFGEMERDALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVIKSESQKKA 1082 Query: 1304 ----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + MP F L E+ ++ I +EL Sbjct: 1083 KRDMLGLPTVKPPKNFACQACKTSKGMETVAMPYVFRYLASELAAMNIKLELRL 1136 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 113/1057 (10%), Positives = 268/1057 (25%), Gaps = 196/1057 (18%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R + S F D K S + + +P + L I ++ Sbjct: 19 RELYRPHIDSFDYFIDEGLDKMLQSIRPV--EITVPKSPTTLRNILPELGTPKASILKKV 76 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER---LRGETASFDIEANG 259 ++ ++ + + L F + L + ++ + Sbjct: 77 QIHHILVSKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKRNYPMGLIR 136 Query: 260 KVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSL 319 +V +G T V + V + + + ++ S E L Sbjct: 137 GSFVNRGAGYT--------DKAVIIRCVQDDQSSVTIKLYYLLNGSARLGFWLGGREFLL 188 Query: 320 DLLAKLSQSGHKRIETLFT--------------------NDLDHGPYISETLRVDPTNDR 359 + L +FT + I + +R R Sbjct: 189 PVGIVLKALIDTSDREIFTSLTCCYSDHYERGKGVVSTQLIGERAQIILDEVRDLSLFTR 248 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 L+ + + R ++ ++ D V + + Sbjct: 249 TECLLHLGKYFR---------------SVMEGFEKDDFETVAEAVLKDYIFVH--LQNNH 291 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 + +I +++KL I + D D L + + G + + L R K + Sbjct: 292 DKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLITVFLKDRLQDWLRKSKRLI 351 Query: 480 -----SLGDLDTLMPQDMI------------------------------------NAKPI 498 D +D I + + Sbjct: 352 VEEATKNKSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWLMRIGAQEVRKFLSKTSAYV 411 Query: 499 SAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 A++ ++ + ++ N I+H R ++ G + Sbjct: 412 GKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISHFR---SVHRGSSFAKMRT 468 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLET---PYRKVTDGVVTD 601 VR + P +G +CP+ TP+G GL+N ++ + + + E ++K+ ++ Sbjct: 469 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGATKDFQKIKMSLIAR 528 Query: 602 EIHYLSAIEEGNY--VIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS--- 656 + A ++ +G V + + + + +V Y+ +S Sbjct: 529 LVGAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEEVIPED--LEVGYVPLSHGG 586 Query: 657 ---TQQVVSVGASLIPFL-----EHDDANRALMGANMQRQAVPTLRAD------KPLVGT 702 + + A + + + + ++ + D L Sbjct: 587 AYPGLYLFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQAFMEIRCPDGGDGGRNKLFPA 646 Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN 762 E ++ + + D ++ + + +M G L R++ Sbjct: 647 THEEI----HPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALK--FRTDVK 700 Query: 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERV 822 Q P + D E G N VA + + GY+ ED++++++ Sbjct: 701 AFHLQTPQTPIVRTATYSKYCMD-------EFPSGTNAIVAVLSYTGYDMEDAMILNKSA 753 Query: 823 VQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDI 882 V F Q N+ + ++ G+ IG + Sbjct: 754 VDRGMFRGHIFQTECIDLSAKSRDNVTEFFCKSNLSRDTTAAIESDGLPRIGENIFPN-- 811 Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD 942 E + L + +++ + V V + ++ Sbjct: 812 ---------EQYYSVCNNLTGTV----------RPIKLKGSEPAAIDYVAVNGTNFKDRL 852 Query: 943 KRALEIEE--MQLKQAKKDLSEELQILEAGLFSRIRAVLVA-GGVEAEKLDKLPRDRWLE 999 ++A K S Q + + L P Sbjct: 853 QKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSR 912 Query: 1000 LGLTD-----------------------EEKQNQLEQLAEQYDELKHEFEKKL--EAKRR 1034 + + + + + ++ + + Sbjct: 913 MTIAMLLESIAAKAGSLKGKFIDATPFASSVKERSNSIVDELGPMLASYGFNYHGTEILY 972 Query: 1035 KITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 G ++ + Y ++ DK R Sbjct: 973 SGVFGTEMKCEIFLGPVYYQRLRH--MVSDKFQVRTT 1007 >UniRef50_P20028 DNA-directed RNA polymerase I subunit RPA2 n=17 Tax=Neoptera RepID=RPA2_DROME Length = 1129 Score = 355 bits (910), Expect = 7e-96, Method: Composition-based stats. Identities = 112/943 (11%), Positives = 268/943 (28%), Gaps = 108/943 (11%) Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRA 212 P D + + + + L + + + +D ++P + +A Sbjct: 86 PQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMD-LGEVPIMLRSKA 144 Query: 213 LNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITAR 272 N ++ + + +R I + R Sbjct: 145 CNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRM-----LIMTRRNHPICVKRSSWKD 199 Query: 273 HIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKR 332 + + + V + + V + + + + + L Sbjct: 200 RGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYT 259 Query: 333 IETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF--- 389 E ++ + + +S + + R ++ T +S NLF Sbjct: 260 DEEIYNRLVQ---------GYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFRAR 310 Query: 390 --FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDH 447 + V ++ + I+ +++KL GK +V+++D Sbjct: 311 FPEVPEWQPDDDVTDFILRERVMIH--LDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDS 368 Query: 448 LGNRRIRSVGEMAENQFRVGLVRVERAVK----ERLSLGDL---DTLMPQDMINAKPISA 500 + + G + + + V+ ++L+ D +M Q M A + Sbjct: 369 AMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTSAVMTQCMRQAGGVGR 428 Query: 501 AVKEFFGSSQ--------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 A++ F + L + N + ++H R A+ G E Sbjct: 429 AIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFR---AIHRGSYFTTMRTTE 485 Query: 547 VRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGF--LETPYRKVTDGVVTDEIH 604 R + P +G +CP+ TP+G GL+N L++ + + L K + + Sbjct: 486 ARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLS 545 Query: 605 YLSAIEEGNYVIAQANSNL------DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVS-- 656 + E Y + + E V++L + G ++ ++ Sbjct: 546 NRRYLGEKLY-VVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQM--MEIGFIPFKKN 602 Query: 657 ----TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT---LRADKPLVGTGMERAVA 709 + + A ++ + + R +++ + + P T +E Sbjct: 603 GQFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLE---- 658 Query: 710 VDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP 769 + ++ ++ D ++ + + +M G L ++ Q P Sbjct: 659 -LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPC--LNWPKQAANKLYRLQTP 715 Query: 770 CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFT 829 L PV ++ D + A+G N VA + + GY+ ED++++++ + Sbjct: 716 GTPLFRPVHYDNIQLD-------DFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAY 768 Query: 830 TIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTP 889 + A P++ E + LD G+ + G++++ G L Sbjct: 769 GSIYKTKFLTLDKKSS----YFARHPHMPE-LIKHLDTDGLPHPGSKLSYGSPLYC---- 819 Query: 890 KGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV--EKDKRALE 947 F + + K +++ V ++ + +K Sbjct: 820 ---------------YFDGEVATYK--VVKMDEKEDCIVESIRQLGSFDLSPKKMVAITL 862 Query: 948 IEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEK 1007 K S Q + + P + + + Sbjct: 863 RVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIE 922 Query: 1008 QNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV 1050 + A + + E G L G Sbjct: 923 TMAGKGAAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYY 965 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 105/570 (18%), Positives = 167/570 (29%), Gaps = 138/570 (24%) Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 +P YN + ++ ++ T ++ +L T P Sbjct: 668 LANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQ----TPGTPLFRPV 723 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRV 920 + + A+ D++D+ Sbjct: 724 HYDNIQLD-------------------------DFAMGTNAIVAVISYTGYDMEDA---- 754 Query: 921 PNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 + + E+ I + + K S + Sbjct: 755 -----------MIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARHP------------- 790 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF-EKKLEAKRRKITQG 1039 E + L D G + K ++K + I Q Sbjct: 791 ---HMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQL 847 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 K+V + L V R GDK A R G KG+ S+ P ED+P+ E+G DIV N Sbjct: 848 GSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFN 907 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P H + I I M + A Sbjct: 908 P---------------HGFPSRMTIAMMIETMAGKGA----------------AIHGNVY 936 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 D + F E + ++L+ G G RLY G G Sbjct: 937 DATPFRFSE-------------------ENTAIDYFGKMLEAGGYNYYGTERLYSGVDGR 977 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + G ++ +L H+V DK RSTG+ T QP+ G+ + GG RFGEME AL Sbjct: 978 EMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALI 1037 Query: 1280 AYGAAYTLQEMLTVKSDD----VNGRTK-----------------------MYKNIVDGN 1312 ++GAA+ LQ+ L SD V + + D + Sbjct: 1038 SHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNS 1097 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 +P SF L+ E+ S+ IN + Sbjct: 1098 SVSMIEIPFSFKYLVTELSSVNINARFKLN 1127 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 39/296 (13%), Positives = 91/296 (30%), Gaps = 69/296 (23%) Query: 3 YSYTEKKRIRKDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFP-- 58 + R +F + P+ L + L +DSF + + GL+ + + + P Sbjct: 9 KTIPVLTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLT------VGLDNSAKHMIPNH 62 Query: 59 -IQSYSGNSELQYVSYRLGEPV------------FDVQECQIRGVTYSAPLRVKLRLVIY 105 + ++ S + +P + + V+YS V+L + Sbjct: 63 WLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVN 122 Query: 106 EREAPEGTVKDIKEQEVYMGEIPLMTDN------------------------GTFVINGT 141 + + +GE+P+M + G FVI G Sbjct: 123 GVQKTPINMD--------LGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGN 174 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPK--- 191 E+++ + K + ++ + + D + Sbjct: 175 EKIVRMLIMTRRNHPI-CVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTA 233 Query: 192 DNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 +F + R +P +IL+ L + + + +++ ++ + V LR Sbjct: 234 KFMFSHVKRLSYVPVCLILKCL---MDYTDEEIYNRLVQGYESDQYYVSCVQAMLR 286 >UniRef50_B5RWZ2 Probable dna-directed rna polymerase beta chain (Partial sequence n terminus) protein (Fragment) n=1 Tax=Ralstonia solanacearum RepID=B5RWZ2_RALSO Length = 587 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 254/441 (57%), Positives = 330/441 (74%), Gaps = 6/441 (1%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSV 56 M YS+TEKKRIRK F KR V VP+LL+ Q+ S+ +F+++ GL+AAF ++ Sbjct: 1 MAYSFTEKKRIRKSFAKRATVHQVPFLLATQIQSYAQFLQEHVSVAQRKTEGLQAAFNAI 60 Query: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116 FPI S++G + +++VSY L P FDV+ECQ RG+T+ + LR K+RL+I +RE P VK+ Sbjct: 61 FPIVSHNGLARMEFVSYHLSHPPFDVKECQQRGLTFHSALRAKVRLIINDRENPTK-VKE 119 Query: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176 IKEQEVYMGEIPLMT G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++ARI Sbjct: 120 IKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI 179 Query: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236 IPYRGSWLDF+FDPKD L+ R+DRRRK+P TI+L+++ T EQIL FF F ++ + Sbjct: 180 IPYRGSWLDFQFDPKDILYFRVDRRRKMPVTILLKSIGLTPEQILAHFFVFDNFTLKSDG 239 Query: 237 LQMELVPERLRGETASFDIE-ANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 ME VPERLRGE A FDI NGKV +EK +RI A+HIR L+ KLI VP +Y+ G+ Sbjct: 240 ALMEFVPERLRGEVARFDISDKNGKVVIEKDKRINAKHIRDLDAAGTKLISVPEDYLLGR 299 Query: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355 V+AK+ +D TGE++ AN EL+ +L KL +G K I+TL+TNDLD GPY+S+TLR D Sbjct: 300 VLAKNIVDPDTGEVLANANDELTEGVLEKLRDAGVKDIQTLYTNDLDQGPYMSQTLRTDD 359 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 T D+ +A + IYRMMRPGEPPT +A E+LF+ LF++ED YDLS VGRMK N L R E Sbjct: 360 TVDQTAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDSYDLSRVGRMKVNSRLNRSEGT 419 Query: 416 GSGILSKDDIIDVMKKLIDIR 436 G +L+ DDI+D +K L+++R Sbjct: 420 GPMVLTDDDILDTIKLLVNLR 440 >UniRef50_B9F8X6 DNA-directed RNA polymerase n=2 Tax=Oryza sativa RepID=B9F8X6_ORYSJ Length = 1115 Score = 350 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 113/950 (11%), Positives = 260/950 (27%), Gaps = 147/950 (15%) Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTT 217 + Y+A ++ + +++ K I LP + A Sbjct: 165 EKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKRKPNFII---GYLPIMLRSHACVLNG 221 Query: 218 EQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQL 277 ++ ++ E F ++ KV + + + R I Sbjct: 222 ----------------KDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRIIIDT 265 Query: 278 EKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIET-- 335 + + V K ++++ L + + ++ + G + + Sbjct: 266 DSKGRVIASVTSSTHEIKSKTVIFMEKEKIYLQLNQFTKP-IPIIVVMKAMGMESDQEVA 324 Query: 336 -LFTNDLDHGPYISETLRV---DPTNDRLSALVEIYRM-MRPGEPPTREAAESLFENLFF 390 + D +G + +++ + + AL + M PG +E F Sbjct: 325 QMVGRDPRYGDLLYPSIQECAFERIYTQKQALQYMDDKVMYPGAGNQKEGRSKSILRDVF 384 Query: 391 SEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN 450 G+ ++++++D DD D++GN Sbjct: 385 VA-----------------HVPVESGNFRPKCIYTAVMLRRMMDAILNADTFDDKDYVGN 427 Query: 451 RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD----TLMPQDMINAKPISAAVKEFF 506 +R+ G++ F + E ++ L I I+ ++ Sbjct: 428 KRLELSGQLISLLFEDLFKTMNSNAVELMNKTSEKIHSSPLDLSLHIKENIITHGLERAI 487 Query: 507 GSSQL------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTH 554 + SQ + + + ++ + + RI+ + R R + P+ Sbjct: 488 STGNWDIKRFRMHRKGVSQVLSRLSYMASLGYMTRIT----PQFEKTRKTSGPRALQPSQ 543 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEE--G 612 + +++ LS E Sbjct: 544 ----------------------------------------CYSLGVEDLSLLSGEEIHAS 563 Query: 613 NYVIAQAN----SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 + N + F + R G F V+ + S G + Sbjct: 564 GSFLVMFNGLILGKHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQ-HCIHIASDGGRVC 622 Query: 669 PFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVD 728 L D + + +Q +R+ + G+ + V+ A+ Y Sbjct: 623 RPLIIADKGIPRVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALIAL-----YEH 677 Query: 729 ASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPS 788 + + I+ + R++ + P+ + Sbjct: 678 EDQDDV----QRSSITHIEIEPLTILGLFRADSLLYLLVYAQ----RPLLTTKTIE---L 726 Query: 789 TDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPE 848 +L GQN VA M ++GY+ ED+I++++ + I +++ + G Sbjct: 727 VGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYS 786 Query: 849 E--ITADIPNVGE---AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLR 903 + + G + LDE G G + DI V K TP+ + + Sbjct: 787 DRIVKPQRDKDGALLKQNMRALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDSG------ 840 Query: 904 AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEE 963 A ++ + + +G + V V + + + + + + + K S Sbjct: 841 AHLTDRDYKDSPAVYKGVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRH 900 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG--LTDEEKQNQLEQLAEQYDEL 1021 Q G + + L P G + +K + + ++ Sbjct: 901 GQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSAFGEPSGNADKVEDISRTLVKHGFS 960 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 + + Q + K + DKM R Sbjct: 961 YNGKDLLYSGILGHPCQAYVFMGPIYY-------QKLKHMVLDKMHARAS 1003 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 100/622 (16%), Positives = 177/622 (28%), Gaps = 137/622 (22%) Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 + G L + + M + G D L DG + ++ Sbjct: 610 HCIHIASDGGRVCRPLIIADKGIPRVKEHHMKQLRDGIRSF-DDFLRDG-LIEYLDVNEE 667 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV--SRDTKLGPEEITADIP 855 N +A + + +D VQ T I I+ L + R L + A P Sbjct: 668 NNALIAL--YEHEDQDD--------VQRSSITHIEIEPLTILGLFRADSLLYLLVYAQRP 717 Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 + + + + + A+ D++D Sbjct: 718 LLTTKTIELVGYDKL-------------------------GAGQNATVAVMSYSGYDIED 752 Query: 916 SSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRI 975 + + + + + V K+K + K ++ +L+ + + Sbjct: 753 AIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDR---IVKPQRDKDGALLKQNMRA-- 807 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 L G A L D ++ + + Sbjct: 808 ---LDEDGFAAPGLIIRNHDIYVNKQTP-----------RNTKRDSGAHLTDRDYKDSPA 853 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 + +G D V+ V + K +I I P + Sbjct: 854 VYKGVDGETTVVDRVM--------------LCSDTDEKLIIKCIIRHTRRPEVGD----- 894 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 SR G K QQE E + Sbjct: 895 ------KFSSR-----------------HGQKGVCGTIVQQEDFPFSERGICPDLIMNPH 931 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 P + K +I L +G+ LY G Sbjct: 932 GFPS---------------------AFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSG 970 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 G + V +G +Y KL H+V DKMHAR++G L+T+QP G+++ GG R GEME Sbjct: 971 ILGHPCQAYVFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMER 1030 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTK----------------MYKNIVDGNHQMEPGM 1319 L AYGA+ + E L + SD + +G + + M Sbjct: 1031 DCLIAYGASMLIFERLLISSDPYQVQVCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRM 1090 Query: 1320 PESFNVLLKEIRSLGINIELED 1341 P + +L +E++++ + L+ Sbjct: 1091 PYACKLLFQELQAMNVVPRLKL 1112 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 52/245 (21%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS-YSGNSELQ-Y 70 F P L V L+ +DSF FI + G+ ++ I++ + + L+ Y Sbjct: 95 DKFALLPAFLKVRGLVKEHIDSFNYFITK------GIRNIVKANNRIEARNNPSIFLRQY 148 Query: 71 VSYRLGEP---------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE 121 S R+G P C++ TYSAP+ + + ++ + I Sbjct: 149 NSVRVGVPSVQVQYIAEKITPHFCRLTDRTYSAPVLADIEYTVGKQYELKRKPNFI---- 204 Query: 122 VYMGEIPLM------------------------TDNGTFVINGTERVIVSQLHRSPGVFF 157 +G +P+M G F++ GTE+VI+ Q S Sbjct: 205 --IGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVILIQEQLSKNRII 262 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK-LPATIILRALNYT 216 K V + I + F K+ +++++++ K +P ++++A+ Sbjct: 263 IDTDSKGRVIASVTSSTHEIKSK----TVIFMEKEKIYLQLNQFTKPIPIIVVMKAMGME 318 Query: 217 TEQIL 221 ++Q + Sbjct: 319 SDQEV 323 >UniRef50_Q60181 DNA-directed RNA polymerase subunit B' n=103 Tax=root RepID=RPOB1_METJA Length = 636 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 115/762 (15%), Positives = 223/762 (29%), Gaps = 180/762 (23%) Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 L++ E YV + D+ V + R KGE ++ + + + Sbjct: 4 LASREVNIYVNGKLVGTTDKPEELVNFIREKRRKGELPQYTTVAYNEESND-IHINTDAG 62 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 ++ L + + + + + + GV++ Sbjct: 63 RIVRPLIVVENGKPKLTKEH-------------------IEKLKKGEITFSDLVKEGVIE 103 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 Y+DA L++ + ++T + P LG Sbjct: 104 YLDAEEEENAY--------------IALSEEELTEKHTHLEIDPLTILG----------- 138 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 + P+ +N I ++ + ++ + R Sbjct: 139 --------------IGAGVAPYPEHNSAPRITMAAAMGKQSLGIPM----SNIKWRLDTR 180 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 G +P V L + + + AI Sbjct: 181 GHYLHYPQVPIVRTKHQEILGFD-------------------------KRPAGQNFVVAI 215 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK----RALEIEEMQLKQAKKDLS 961 + +++D+ + + + + F + + + E Sbjct: 216 MSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACERRYPGGQMDRFEIPDKGVRGYRSE 275 Query: 962 EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDEL 1021 E + LE + + + G V K E+ + + Q + + ++ E Sbjct: 276 ECYRYLEEDGIVAVESHVKGGDVIVGKTSPPRFLEEHEITIQVKP-QRRDSSVVVRHGEE 334 Query: 1022 KHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP 1081 + ++VKV + Sbjct: 335 GY-----------IDKVILTETKEGNRLVKVKVR-------------------------- 357 Query: 1082 IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKL 1141 D+ + LG A G K L QE Sbjct: 358 -------------DLRIPELG---------------DKFASRHGQKGVMGLTVPQEDLPF 389 Query: 1142 REFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL 1201 E + ++ E++ +G I +F G KE ++++ L+ Sbjct: 390 TESGIVPDIIINPHAIPSRMTVGQLLEMLGGKVGALEGRRIDGTIFSGEKEWDLRKALEA 449 Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG 1261 G+ +YDG+TG++FE + +G Y KL+HLV K+HARS G ++T+QP G Sbjct: 450 LGFKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEG 509 Query: 1262 KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----------------------DVN 1299 +A+ GG RFGEME L +GAA L+E L +SD Sbjct: 510 RAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFAILDYKRGLKYC 569 Query: 1300 GRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 +N+ +P +F +LL E++S+ I ++ Sbjct: 570 PICGEIENLYSSKKIPFVRIPYAFKLLLDELKSMCILPRIKV 611 >UniRef50_Q3LW79 Second-largest subunit of RNA polymerase III n=1 Tax=Bigelowiella natans RepID=Q3LW79_BIGNA Length = 1074 Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats. Identities = 150/1238 (12%), Positives = 350/1238 (28%), Gaps = 250/1238 (20%) Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI-IPYRGSWLDFEFDPKDN 193 ++ ++ + G F K Y+ + I + K++ Sbjct: 55 YNILKRGTNSHLTLPLKIEGKNFKKFTPFISRLCKYSYSGILLIAINVETIKLNQFKKND 114 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +P + Q+ ++ + + Sbjct: 115 SKCYFINLGNIPILLRSLKCILNYAQVKKSICYGECPLDLGGYFILKGKERSILIQEIYK 174 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 N ++Y + + K+I ++ + ID + Sbjct: 175 SSLFNFRLYKKNSVITKLFMKYYKKIFKYKIIINKSKFTLSSNLFNSEIDLIILLIALGL 234 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 L + + + + +S+ + + + A + ++ Sbjct: 235 KEVKLYHFLNSIGVYSMELFSKINNTFRNFDKQLSKCYLKNKIDSFVKAFIFNHKKKFI- 293 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 + EN+ SE Y +I ++KK + Sbjct: 294 --------DKFLENILLSEIPYLNGDFSY------------------KIVFLIILIKKSL 327 Query: 434 DIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL-----SLGDLDTLM 488 + + + L N R +G++ + F + ++ + + + ++ + Sbjct: 328 ILLHNNTPLISGFSLSNTRYLRIGDLLKITFSSCMNKLFEFLIKSILKLSTNITKNSKIN 387 Query: 489 PQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSEITHKRRISALGPG 536 ++ + I+ A++ S SQ + + LS + +I++ Sbjct: 388 IIRILKSHNITQAIEYSLLSGIFTNKNLVVSIVCNSQVHTKFSYLSTTSMLNKINSY--- 444 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 + + R + ++ RVC IE+PEG + GLI +LS Y+Q + + E Sbjct: 445 -VNKSIKSLYPRSLFLNYWNRVCFIESPEGESCGLIKNLSYYSQIS-FTIDENKITSYLL 502 Query: 597 GVVTD------EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV 650 + T + LS + + + + + + R F V Sbjct: 503 TLGTRVFRNDLNLLMLSRKQFSVFHKTKIIGYHENIFWLIYTIKQLRRSFFLDKFLNYYV 562 Query: 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAV 710 + + S ++ L ++ N Sbjct: 563 NE---KICVINSDEGRILRPLFTLKIYKSNTIKNN--------------------YFGKT 599 Query: 711 DSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPC 770 D+ G ++++D E + K Sbjct: 600 DNKTLRDLMLRGYIEFLDYDE-------------EICTNPVPFEKNIN------------ 634 Query: 771 VSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTT 830 + + G T G + +P+ +N + +++ Sbjct: 635 -------KYTSHIEIGNFTIFG-------IIAGIVPFTNHNQAPRNTYHCAMEKQNIG-- 678 Query: 831 IHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPK 890 L ++ V ++ DI+ G Sbjct: 679 --FYGLNQFVNNSLTINILWYPQKSLVYNDI-------------SKSNKTDIIGG----- 718 Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 + ++ ++ + +++DS + + + + + R + Sbjct: 719 -------AQNIILSVMNFDSFNIEDSLIANKDSSFLGLFRG---SSLIIFLIYRINKPIT 768 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 K + +I++ ++ L+ K+ + Sbjct: 769 EPTKITFFEFLTRKKIIKNDSEEKLGE---------------------NNFLSFSSKEKR 807 Query: 1011 LEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 L KK + + + + GDK + RH Sbjct: 808 FNILRSHLANSICMITKK-------------------SDIDLKYTLNHFPEIGDKYSSRH 848 Query: 1071 GNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINA 1130 G KGV+ + P++ NG D ++NP G SRM +GQ+LE+ G+ + Sbjct: 849 GQKGVVGLMGNKIHFPFNLNGQIPDFIMNPAGFTSRMTMGQVLESLFTKVVLAKGNPFKS 908 Query: 1131 MLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGA 1190 + + ++ + + + F G Sbjct: 909 SIFESN---------------------------------KLYLKDCTQSLILCDTEFSG- 934 Query: 1191 KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS 1250 + + + + G + + G ++ KL HLV +K+ +RS+G Sbjct: 935 ------------------KETMINPKKGSIYNSTIFTGPIFYHKLKHLVSNKIQSRSSGR 976 Query: 1251 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVD 1310 ++T+QP+ G+ + GG R GEME + A+G L E + SD I+D Sbjct: 977 KHILTKQPVKGRGKQGGLRIGEMEKDCIIAFGCTSVLVERMLENSDSHKFILVKKSGIID 1036 Query: 1311 GNH--------QMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ + + +F +L +E+++ I+I ++ Sbjct: 1037 ASNKKLSTTNKIYKNRISYAFKLLFQELQATNISIRIK 1074 Score = 59.5 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 42/446 (9%), Positives = 119/446 (26%), Gaps = 48/446 (10%) Query: 28 LSIQLDSFQKFIEQDPE--------------GQYGLEAAFRSVFPIQSYSGNSELQYVSY 73 + Q+ S+ FI + ++GL + + + L+ Sbjct: 16 IYQQIISYNNFITNTIKNIVKKKKIKIIFKDNEFGLNIRYNILKRGTNSHLTLPLKIEGK 75 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 F ++ +YS L + + + + + D K + +G IP++ + Sbjct: 76 NFK--KFTPFISRLCKYSYSGILLIAINVETIKLNQFKK--NDSKCYFINLGNIPILLRS 131 Query: 134 GTFVINGTERVIVSQLHRSP---GVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 ++N + P G +F + + +Y + + +R + Sbjct: 132 LKCILNYAQVKKSICYGECPLDLGGYFILKGKERSILIQEIYKSSLFNFRLYKKNSVITK 191 Query: 191 KDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET 250 + K I ++ ++ K G Sbjct: 192 --LFMKYYKKIFKYKIIINKSKFTLSSNLFNSEIDLIILLIALGLKEVKLYHFLNSIGVY 249 Query: 251 ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELI 310 + + ++++ +++ VK + ++ + L Sbjct: 250 SMELFSKINNTFRNFDKQLSKCYLKNKIDSFVKAFIFNHKKKFIDKFLENILLSEIPYLN 309 Query: 311 CAANMELSLDLLAKLSQS-----------------------GHKRIETLFTNDLDHGPYI 347 + ++ ++ G T + ++ Sbjct: 310 GDFSYKIVFLIILIKKSLILLHNNTPLISGFSLSNTRYLRIGDLLKITFSSCMNKLFEFL 369 Query: 348 SETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNR 407 +++ TN ++ + I R+++ +A E + F+ +S V + + Sbjct: 370 IKSILKLSTNITKNSKINIIRILKSHNIT--QAIEYSLLSGIFTNKNLVVSIVCNSQVHT 427 Query: 408 SLLREEIEGSGILSKDDIIDVMKKLI 433 + +K L Sbjct: 428 KFSYLSTTSMLNKINSYVNKSIKSLY 453 >UniRef50_D0V9L6 RNA polymerase beta subunit (Fragment) n=2 Tax=Firmicutes RepID=D0V9L6_9BACI Length = 481 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 181/529 (34%), Positives = 279/529 (52%), Gaps = 68/529 (12%) Query: 8 KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE 67 + R R+ + + +VL++P L+ IQ S+Q F+++ GL F+ + PI+ ++GN Sbjct: 10 RHRQRRSYARISEVLELPNLIEIQTSSYQWFLDE------GLREMFQDISPIEDFTGNLS 63 Query: 68 LQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 L+++ Y LG+P + V+E + R VTYSAPLRVK+RL+ E ++K+Q+V+MG+ Sbjct: 64 LEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLINKE-------TGEVKDQDVFMGDF 116 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 P+MTD GTF+ING ERVIVSQL RSP V+F K +GK + A +IP RG+WL++E Sbjct: 117 PIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDK---NGKKGFTATVIPNRGAWLEYE 173 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNY-TTEQILDLFFEKV--------IFEIRDNKLQ 238 D KD ++VRIDR RKLP T++LRAL + + ++ILDL E +K Sbjct: 174 TDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLRNTLDKDNTENSDKAL 233 Query: 239 MELVPERLRGETASFDIEAN--GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 +E+ GE + + + + + R A R + + + Sbjct: 234 LEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKL----HIKNRLFNQR 289 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPT 356 +A+ +D TGE++ L L K L++G + Sbjct: 290 LAETLVDPETGEILAEKGQILDRRTLDK------------VLPYLENGIGFRKLYPNGGV 337 Query: 357 NDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG 416 +++ ++ P + G N E Sbjct: 338 V-EDEVMLQSIKIYAPTDAE------------------------GEQTINVIGNAYIEEA 372 Query: 417 SGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK 476 ++ DII + ++ +G G+ DDIDHLGNRR+RSV E+ +NQFR+GL R+ER V+ Sbjct: 373 IKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVCELLQNQFRIGLSRMERVVR 432 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEIT 525 ER+S+ D +T+ PQ +IN +P+ A++KEFFGSSQLSQFMDQ NPL+E+T Sbjct: 433 ERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT 481 >UniRef50_D2TET4 Putative DNA-directed RNA polymerase II subunit n=1 Tax=Emiliania huxleyi virus 99B1 RepID=D2TET4_9VIRU Length = 1507 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 142/1045 (13%), Positives = 292/1045 (27%), Gaps = 193/1045 (18%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG-NSELQYVSY 73 + ++ ++ Q++S+ FIE + + + + S + + + + Sbjct: 10 WSVIGDYINSVSPVAHQIESYDHFIENQLPY---IISEGSDISYMHSSGKVSHHVHFTNP 66 Query: 74 RLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN 133 + P + K ++ + +T + Sbjct: 67 SVNRPAIQESD------------------------------GFYKPITPHIARLRGLTYS 96 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 T V+V +H + ++ II Sbjct: 97 ST--------VVVDVIHDRINHTVSPPT----LINRKVFRNVIIAQ-------------- 130 Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 +P + + DL + E F Sbjct: 131 ----------IPVMVRSKLCYLADVSENDLSADAKKH-------------ECKVDPGGYF 167 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK-------VVAKDYIDEST 306 I N K + + + T K K + + + D S Sbjct: 168 IISGNEKTLIPQTKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMNINDISN 227 Query: 307 GELICAANMELS-------LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV--DPTN 357 GE+ L L I N I + N Sbjct: 228 GEVPVITCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIMLDSDTKQN 287 Query: 358 DRLSALVEIYRMMRPGEPP--TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 A+++ + T+E+ E + + + + Sbjct: 288 YSRDAIMDWVGRNVTSDTTRATKESREKYID------------HIITSELAPHMGLVNNP 335 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG-----LVR 470 + I ++++L+ + G+ VDD D N+RI S G + R + Sbjct: 336 ETNKKKMIFIGHMIQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQG 395 Query: 471 VERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL----------------SQF 514 + +++++ T ++++ K I++ +K F + Q Sbjct: 396 LSTQLRKQVESPREATFNVGEIVSHKKITSGLKFAFATGTWGISRGGGTANGGQTGVVQI 455 Query: 515 MDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS 574 + + ++ + R+I+ + RE R +HP+ +G VC +TPEG GL+++ Sbjct: 456 LPRLTTMATLGASRKINT----PIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSN 511 Query: 575 LSVYAQTNEYGFLE-------TPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEG 627 L++ + ++ T + T Y+ N I +D+ Sbjct: 512 LAMTTRIRIGAPMQPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIK 571 Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 + + R G + + ++ V S +L+ L D + MQ Sbjct: 572 EIATQMRSLRRHGNLPFDCS--ISISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQN 629 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAV--------------------AKRGGV---- 723 AV ++ G+ + A G+ Sbjct: 630 PAV-VPNKYTRMLREGIIEYIDSAEQTNMRVAIHHTDIEQDEYTHIEIHPALLTGICVSQ 688 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 + + D ++ + G+ Y R + + P L Sbjct: 689 IPFCDHNQSPRIAYQAAQCKQAIGL--YTTNFAERLDTVGHVLATPQKPLVTTRLE---- 742 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT 843 + G VA M ++G+N +DS+L+++ + FT+ + + T Sbjct: 743 ---ELLGTSVVRSGAVPIVAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEEKGT 799 Query: 844 KLGPEEITADI-----PNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 E + EA SK+D+ G+ IG GD+L+GKV Q P+ Sbjct: 800 GADIERFENPKNIPGCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQADPK 859 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 E +R +D S + V V + K Sbjct: 860 EGEVR------RDTKRDRSHVLRTDEPVVVDAVFFSKTPEGHGYVKVRTRAIRIPMVGDK 913 Query: 959 D-LSEELQILEAGLFSRIRAVLVAG 982 L+ + ++L + I V Sbjct: 914 FCLTADHEVLTKDGWKYINNVTPDD 938 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 105/295 (35%), Gaps = 75/295 (25%) Query: 1067 AGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGD 1126 + RHG KGV P D P +G DI+ + H + IG Sbjct: 1266 SSRHGQKGVCGVTMPAADFPCTADGVAPDII---------------INPHAIPSRMTIGM 1310 Query: 1127 KINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPV 1186 + E++ +G Sbjct: 1311 LM---------------------------------------EMVLSKVACYEGETQDGTP 1331 Query: 1187 FDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHAR 1246 F G I + L+ + G LY+G +GE E + + Y +L H+V DK HAR Sbjct: 1332 FTGNNIELIADRLETHGMQRYGNEMLYNGMSGEILESMIFIAPCYYQRLKHMVVDKSHAR 1391 Query: 1247 STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV----NGRT 1302 + G+ L+T+ P G+++ GG R GEME ++ ++GA ++ L +SD + Sbjct: 1392 NRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKC 1451 Query: 1303 K-----------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 ++ G H +P S +L++E+ + I+ LE Sbjct: 1452 GHFAREGTDDTSVKNSGMWCEHCKTGEHCTHTQLPYSMKLLIQELAAAHISATLE 1506 >UniRef50_O27124 DNA-directed RNA polymerase subunit B' n=34 Tax=Archaea RepID=RPOB1_METTH Length = 603 Score = 332 bits (850), Expect = 7e-89, Method: Composition-based stats. Identities = 121/750 (16%), Positives = 213/750 (28%), Gaps = 173/750 (23%) Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFL 671 Y+ + + FVE++ R GE S + Y + + + L Sbjct: 5 KIYINGKLIGTCENPEEFVEEMRKKRRSGEVSPEM-NITHYPENHEIYIFTDPGRARRPL 63 Query: 672 EHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASR 731 + L+ + G+++Y+DA Sbjct: 64 IIVEDGEPLLTEEHL-------------------EKLETGEMSWDDLIAAGIIEYLDAEE 104 Query: 732 IVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDL 791 M P E + L PST L Sbjct: 105 EENAY--IAMSPDEIN------------------------------DEHTHLEIDPSTML 132 Query: 792 GELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT 851 G + +P+ +N + + ++ ++ R Sbjct: 133 G-------ICAGIIPFANHNSSPRNTMEAGMTKQALG--LYASNY--DLRTDTRAHLLHH 181 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 +P V + G + + + A+ + Sbjct: 182 PQVPIVKTRIID-------------------------VTGYDERPSGQNFVVAVMSYEGY 216 Query: 912 DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK----RALEIEEMQLKQAKKDLSEELQIL 967 +++D+ + + + F + + + E + + + L Sbjct: 217 NMEDALILNKASLERGLARSSFFRSYEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHL 276 Query: 968 EAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEK 1027 + + + + D + + E E+ Sbjct: 277 DEDG------------IINPEAEVSSGDVLIGKTSPPRFLEEID--------EFGTVAER 316 Query: 1028 KLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY 1087 + E RHG KG++ + E Sbjct: 317 RRETSVTV---------------------------------RHGEKGIVDAVLLTE---T 340 Query: 1088 DENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQR 1147 E I + P A G K L QE E Sbjct: 341 VEGSRLAKIRVREQRQPE----------LGDKFASRHGQKGVVGLIVSQEDMPFTEDGIV 390 Query: 1148 AYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTS 1207 + +S E++ +G + F G E +IKE L+ T+ Sbjct: 391 PDLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVDGTPFTGEDEDDIKEALRANGFETA 450 Query: 1208 GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGG 1267 G LY+G TGE+ E + +G Y KL+H+ DK++ARS G ++T+QP G+A+ GG Sbjct: 451 GVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGG 510 Query: 1268 QRFGEMEVWALEAYGAAYTLQEMLTVKSDD----VNGRTKM-----------YKNIVDGN 1312 RFGEME L A+GAA L+E L +SD V M Y I + + Sbjct: 511 LRFGEMERDCLIAHGAALALKERLLDESDKYEALVCADCGMIAVYDKIRDKKYCPICEDS 570 Query: 1313 HQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +F +LL E++SL I +L E Sbjct: 571 ESFPVEVSYAFKLLLDELKSLCIFPKLILE 600 >UniRef50_P41557 DNA-directed RNA polymerase subunit B' n=49 Tax=Euryarchaeota RepID=RPOB1_METVS Length = 611 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 115/767 (14%), Positives = 219/767 (28%), Gaps = 190/767 (24%) Query: 607 SAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGAS 666 + YV + + + V+ L R G+ S + Sbjct: 1 MEKQANVYVNGKLIDTSKDPENLVKSLRIQRRSGKLSPNTSI------------------ 42 Query: 667 LIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME--RAVAVDSGVTAVAKRGGVV 724 ++++N + + R P + + E V + + GV+ Sbjct: 43 ----SFNEESNDIHISTDGGRAVRPLVVVENGFSKLTNELLEKVNNNELTFEYLVKTGVI 98 Query: 725 QYVDASRIV---IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGD 781 +++DA I + DE+ ++I L Sbjct: 99 EFLDAEEEENARIAMYNDEITFENTHVEIDPL---------------------------- 130 Query: 782 VLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR 841 + LG VA P+ +N I ++ + ++ + R Sbjct: 131 ------------VILGIGAGVA--PYPEHNSAPRITMAAAMGKQSLGIPMA----NIKWR 172 Query: 842 DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKL 901 G +P V L + + Sbjct: 173 MDTRGHLLHYPQVPLVRTKHQEILGFD-------------------------KRPAGQNF 207 Query: 902 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK----RALEIEEMQLKQAK 957 + A+ + +++D+ + + + F + + + + E + Sbjct: 208 VVAVMSYEGYNMEDAFVINKASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRG 267 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 E + L + + + +G V K E+ L + Q + + + Sbjct: 268 YRAEEAYRNLGDDGLIDLESEVRSGDVILGKTSPPRFLEEQEITLQTKS-QRRDTSVTIR 326 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + E ++ KV + Sbjct: 327 HGEEG-----------VVDLVILSETKEGNRLGKVRVR---------------------- 353 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQE 1137 + + A G K L QE Sbjct: 354 ------------DLRVPE--------------------FGDKFASRHGQKGVIGLVVPQE 381 Query: 1138 VAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKE 1197 E + ++ E++ + + +F G E ++ Sbjct: 382 DLPFTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGSLECRRVDGTIFSGEGEWALRH 441 Query: 1198 LLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 L+ SG+ +YDG+TG + E + VG Y KL+HLV K+HARS G ++T+Q Sbjct: 442 ALENYGFTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQ 501 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKN---------- 1307 P G+A+ GG RFGEME L A+GAA L+E L +SD Sbjct: 502 PTEGRAREGGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIAIFDYKRG 561 Query: 1308 ------------IVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 I D + +F +LL E++S+GI+ +L+ + Sbjct: 562 MKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLKLK 608 >UniRef50_Q0UYS5 DNA-directed RNA polymerase n=57 Tax=Eukaryota RepID=Q0UYS5_PHANO Length = 1616 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 96/587 (16%), Positives = 167/587 (28%), Gaps = 160/587 (27%) Query: 819 SERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVT 878 + ++ ++ T ++ +L T P V ++ Sbjct: 1126 NCQMGKQSMGTPGTAMRYRTDNKTYRLQ----TGQTPVVRPPLHNEYGFDNFP------- 1174 Query: 879 GGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG 938 + A+ D+ D+ + + ++ Sbjct: 1175 ------------------NGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIYKTK- 1215 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + A+++ S S++ V A + + L D Sbjct: 1216 ----------ICDLEEGARRNRSGR-------TISKLFGFAPDSLVPASRKETLDEDGLP 1258 Query: 999 ELGLTDEEKQNQLEQLAEQYD-------------ELKHEFEKKLEAKRRKITQGDDLAPG 1045 +G YD E +L G + Sbjct: 1259 RIGTLLRNGDAIAAWHTVSYDAASDDYVNRDANTNYFKYKEDELAFVEEVRIIGSEDGTQ 1318 Query: 1046 VLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPS 1105 + + + L V R GDK + RHG KGV S+ P DMP+ E+G D+++NP Sbjct: 1319 PCQKLSIKLRVPRSPVIGDKFSSRHGQKGVCSQKWPSIDMPFSESGIQPDVIINP----- 1373 Query: 1106 RMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFS 1165 H + IG + ++ A GA D + F Sbjct: 1374 ----------HAFPSRMTIGMFVESL----------------AGKAGALHGIAQDSTPFR 1407 Query: 1166 DEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPV 1225 +E L G +Y G TG++ + Sbjct: 1408 FDEQ-------------------NTAVDFFGHQLMKAGYNYYGNEPMYSGITGQELAADI 1448 Query: 1226 TVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY 1285 +G +Y +L H+V+DK R+TG + T QP+ G+ + GG R GEME AL A+G A+ Sbjct: 1449 YIGVVYYQRLRHMVNDKYQVRTTGPINSTTGQPIKGRKKGGGIRVGEMERDALIAHGTAF 1508 Query: 1286 TLQEMLTVKSDDVNGRTK----------------------------MYKNIVD------- 1310 LQ+ L SD + Sbjct: 1509 LLQDRLMNCSDYTKAPICRECGSFLSTAPTVSEYGRKKDRGAQLTIRCRRCAKPADGITN 1568 Query: 1311 ---------------GNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 G + +P L E+ S+G+ ++ + E Sbjct: 1569 KADVWMDGQGMRFQGGENIGVVAVPGVLKYLDVELASMGVKLKFKVE 1615 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 92/797 (11%), Positives = 220/797 (27%), Gaps = 150/797 (18%) Query: 9 KRIRKDFGKRPQVLD-VPYL---LSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG 64 KR F P+ P L + ++SF + + L+ V Sbjct: 21 KRRHDLFSNPPKDSTAYPTLAAAVDPHINSFNSIFAAGGQLEEALKDIGTKV-------- 72 Query: 65 NSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 ++ G P +E R L V++ Q+V++ Sbjct: 73 -----FLD---GNPYARPEEVGQRN-----RLSVRI-------------------QDVFL 100 Query: 125 GEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL 184 V+ + +V + ++ + + + + L Sbjct: 101 ---------DKSVLPPSNKVAL----KNRNILPAECRERHATYRGKL-----------RA 136 Query: 185 DFEFDPKDNLFVR-IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVP 243 E+ + + + +P + L K E + + Sbjct: 137 RLEWKVNNGDWREEVCDLGAVPIMLRL-------------VKAKEESEELGGYFIVNGIE 183 Query: 244 ERLRG---ETASFDIEANGKVYVEKGRRIT--ARHIRQLEKDDVKLIEVPVEYIAGKVVA 298 + +R +F + + +G T +R + D G V Sbjct: 184 KIIRMLQVNRRNFPMAIKRGAFTNRGPGYTQYGILLRSMRPDQTSQTNALHYLSDGNVNL 243 Query: 299 KDYIDESTGELICAAN-----MELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 + ++ + ++ L + D + T +V Sbjct: 244 RFSWRKAEYLVPVMMVLKSLVETNDREIFEGLVGAAGSEGLAEKQFVTDRVELLLRTYKV 303 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREE 413 + + + + + + ++ F R L +G Sbjct: 304 YGLHSKAKTRAYLGQKFKVVLQIPEDTSDEEAGTEFL--RRIVLPHLGAY--------HI 353 Query: 414 IEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVER 473 ++ +++KL + G+ VD+ D + N+ I G++ + L + Sbjct: 354 TPAQDADKFRMLLFMIRKLYSLVEGECCVDNPDAVQNQEILLGGQLYGMIMKERLDDWLQ 413 Query: 474 AVK------------ERLSLGDLDTLMPQDMINAKP--ISAAVKEFFGSSQL-------- 511 +++ + + ++ I A++ F + L Sbjct: 414 SMRPVLQDWGRRTEWRPFTSQEFQKDFISKILRRSQTDIGRAMEYFLSTGNLISPTGLDL 473 Query: 512 ------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPE 565 ++ N I+H R + G E VR + P +G +CP+ TP+ Sbjct: 474 QQTAGFVVVAEKINFYRFISHFRMV---HRGAFFAELKTTTVRKLLPESWGFMCPVHTPD 530 Query: 566 GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDE 625 G GL+N S + + K+ + S+ V+ Q + + Sbjct: 531 GAPCGLLNHFSHKCKLATQNVDVSAIPKLVAQLGV---SSKSSASIEASVVVQLDGRVLG 587 Query: 626 EGH------FVEDLVTCRSKGESSLFSRDQVDYMDVS------TQQVVSVGASLIPFLEH 673 + L + +G ++ ++ Y+ S ++S A + +++ Sbjct: 588 FCSPKQAKVIADTLRYWKVEGSHNVPLEMEIGYVPNSNGGQYPGVYMMSQVARMYRPVKY 647 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 ++ ++ + D +V G V D + + + D ++ Sbjct: 648 LPLDKLDYVGPFEQPYMSIACTDAEIVS-GDSTHVEYD-PTNIFSIVANMTPFSDFNQSP 705 Query: 734 IKVNEDEMYPGEAGIDI 750 + + E Sbjct: 706 RNMYQCLSADHEVLTST 722 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 45/390 (11%), Positives = 92/390 (23%), Gaps = 63/390 (16%) Query: 724 VQYVDASRIVIKVN---------EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774 V+Y D +I ++ +M G + R++ T Q + Sbjct: 1103 VEYSDNDKIQEVIDAAQKPFFTGNCQMGKQSMGTPGTAMRY--RTDNKTYRLQTGQTPVV 1160 Query: 775 EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834 P + G N VA + + GY+ +D++++++ + + Sbjct: 1161 RPPLHNEY-------GFDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIYK 1213 Query: 835 ELACVSRDT--------KLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 C + + A V + LDE G+ IG + GD + Sbjct: 1214 TKICDLEEGARRNRSGRTISKLFGFAPDSLVPASRKETLDEDGLPRIGTLLRNGDAIAA- 1272 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV---EKDK 943 + V +V++ + + Sbjct: 1273 ---WHTVSYDAASDDYVNRDANTNY------FKYKEDELAFVEEVRIIGSEDGTQPCQKL 1323 Query: 944 RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 K S Q + + + P + + Sbjct: 1324 SIKLRVPRSPVIGDKFSSRHGQKGVCSQKWPSIDMPFSESGIQPDVIINPHAFPSRMTIG 1383 Query: 1004 --DEEKQNQLEQLA--------------------EQYDELKHEFEKKLEAKRRKITQGDD 1041 E + L + +K + G + Sbjct: 1384 MFVESLAGKAGALHGIAQDSTPFRFDEQNTAVDFFGHQLMKAGYNYYGNEPMYSGITGQE 1443 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 LA + V Y ++ DK R Sbjct: 1444 LAADIYIGVVYYQRLRH--MVNDKYQVRTT 1471 >UniRef50_Q1L6B6 RNA polymerase II second largest subunit (Fragment) n=26 Tax=Spermatophyta RepID=Q1L6B6_9CARY Length = 667 Score = 331 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 92/697 (13%), Positives = 188/697 (26%), Gaps = 131/697 (18%) Query: 189 DPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 + + K+P + DL + + + L Sbjct: 38 EVSEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIA 97 Query: 249 ETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD-------- 300 + + + VYV K R+ + + P + +++++ Sbjct: 98 Q----EKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPPSTMFVRMLSRAGAKGGGSS 153 Query: 301 --YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP-TN 357 YI + + + + L ++ +D + +L Sbjct: 154 GQYIKATLPYIRTEIPIIIIFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQ 213 Query: 358 DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGS 417 ++ AL I + E + + L VG E Sbjct: 214 NQQVALDYIGKR----GATVGVTREKRIKYAKEILQKEMLPHVG-----------VGEYC 258 Query: 418 GILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKE 477 ++ +L+ G+ DD DH GN+R+ G + FR+ ++ R V+ Sbjct: 259 ETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRA 318 Query: 478 RLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMDQNNPLSE 523 + + Q I AK I++ +K + SQ +++ S Sbjct: 319 YVQKCVDQGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST 378 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ++H RR+++ + RE + R +H + +G +CP ETPEG GL+ +L++ Sbjct: 379 LSHLRRLNS----PIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV 434 Query: 584 Y-------GFLET----------------------------PYRKVTDGVVTDEIHYLSA 608 FLE P + + T+ +S Sbjct: 435 GSAAYPILEFLEEWSTENFEACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEISP 494 Query: 609 IEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVG 664 N V+ L R + + + V + + ++ + Sbjct: 495 AVIPQATKIFVNGCWVGIHRDPDLLVKTLRQLRRRVDVNTEVGV-VRDIRLKELRIYTDY 553 Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV 724 L + R L+ R + + D G G + Sbjct: 554 GRCSRPLFIVEKQRLLIKKKDIRALQ---------------QRESPDEGGWHDLVAKGFI 598 Query: 725 QYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLA 784 +Y+D + + E Sbjct: 599 EYIDTEEEETTMISMTINDLITAR---------------------LNPEEAYSETYTHCE 637 Query: 785 DGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSER 821 PS LG + + +P+ +N Sbjct: 638 IHPSLILG-------VCASIIPFPDHNQSPRNTYQSA 667 Score = 71.8 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 28/126 (22%) Query: 79 VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDI-KEQEVYMGEIPLMTDN---- 133 + ++R +TYSAPL V + + ++ V + +V++G++P+M + Sbjct: 4 TLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVSEAQDFTKVFIGKVPIMLRSSYCT 63 Query: 134 --------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173 G F+ING+E+V+++Q S + K K Y Sbjct: 64 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVF---KKRQPNKYAYV 120 Query: 174 ARIIPY 179 A + Sbjct: 121 AEVRSM 126 >UniRef50_Q8SSB7 DNA-directed RNA polymerase n=2 Tax=Apansporoblastina RepID=Q8SSB7_ENCCU Length = 1062 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 134/1017 (13%), Positives = 257/1017 (25%), Gaps = 188/1017 (18%) Query: 138 INGTERVIVSQLHRSPGVF-FDSDKGKTHSSGKVLYNARIIPYRGS-WLDFEFDPKDNLF 195 + G ++IV ++H +P R + Y+G + + Sbjct: 46 VKGKTKIIVEEIHVAPPFLSDKDHISVDRRLLPRECRERGLTYKGKMVVRVSLFHDNKHV 105 Query: 196 VRIDRR-RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 V D+ P + + + + + + + +R F+ Sbjct: 106 VTEDKSAGHFPIMVRSTLCHLNGIKNKNEV--GEDEDEIGGYFIINGIDRFIR-----FN 158 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 I R V + V + I D + I Sbjct: 159 IMQKRNHIFAFKMRKK---TSFFSDYMVSMRCVGRDEIGHMNFLHYCTDGNVVIKIFHKK 215 Query: 315 MELSLDLLAKLSQSGHKRIETLFTNDLDHGPY--ISETLRVDPTNDRLSALVEIYRMMRP 372 E L+ L + E LF + + R L I Sbjct: 216 YEFLFPLVLVLKALVNTTDEELFGALGGGQRAVHLLKCFAEHNVFSRTECLDYIGSRFS- 274 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 ES E +Y +S S + + +I +KL Sbjct: 275 ----AILNFESKAEVAEEILSKYVVSH---------------LSSNLDKFNFLILAARKL 315 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV--------------KER 478 + + DD D N + + ++ + R + R K + Sbjct: 316 FSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIEEFMRFFSMMCRKTYYKLEGEKRK 375 Query: 479 LSLGD-------LDTLMPQDMI-----NAKPISAAVKEFFGSS--------------QLS 512 L D L + + I ++ F S S Sbjct: 376 LEGDSVTESGFCEDELDISKIREIFKRTSINIGQRMELFLSSGSITLTSCSDILQTLGFS 435 Query: 513 QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 ++ N ++H R ++ G +R + P +G +CP+ TP+G G++ Sbjct: 436 ITAERINFYKYLSHFRGVN---RGTHIPSM-VTSIRKLRPESWGFLCPVHTPDGAPCGVL 491 Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVED 632 ++ A+ GVV S + N + D Sbjct: 492 LHMAKEAEVVSRDDDFNTDILFEFGVV------PSIRGVEMGIPVLVNGRVVGSTSSPSD 545 Query: 633 LVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 L R E + ++ + S ++ S+ F R +M + + Sbjct: 546 L--TRMVREYRNRNGLMIEVVYTSEPKM---FPSVCIFSSVGRFARKVMNRRLGSEEWIG 600 Query: 693 LRADKPLVGTGMERAVAVDSGVT----AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGI 748 + L E A D + G++ Y D ++ + + +M G Sbjct: 601 IMEQVFLNIDTEEGAGDGDYYEIDKSGILGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGH 660 Query: 749 DIYNLTKYTRSNQNTC---INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFM 805 +N+ TR++ Q P V D +G N VA + Sbjct: 661 PAHNI--RTRTDPTMYTVNYLQSPIVRTEGYEMVKD------------YPVGINCMVAVL 706 Query: 806 PWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 + Y+ ED++++++ + FT + P + L Sbjct: 707 SYTAYDMEDALVINKNSIDRGLFTGYVYKTEKV----------------PLDKGYFFTYL 750 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 +G + D L V + + + R Sbjct: 751 -----PSVGQRIQKDDTLYRYVD-------------------QDGREYEK---RYLGTEP 783 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVE 985 G V V+VF D E+ K S Q + + Sbjct: 784 GIVDIVRVFENDMGERCATFTIRIVRSPMIGDKFSSRHGQKGVCSMHWPGIDMPFTESGC 843 Query: 986 AEKLDKLPRDRWLELGLT------------------DEEKQNQLEQLAEQYDELKHEFEK 1027 + P + + D + L ++ + + K Sbjct: 844 VPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGTVFKKSFLLEQEEGDDEKVRRK 903 Query: 1028 KLE--------------AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRH 1070 + G++ + V Y +K GDK R Sbjct: 904 EYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFVGVVYYQRLKH--MVGDKFQVRT 958 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 105/503 (20%), Positives = 188/503 (37%), Gaps = 75/503 (14%) Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE----KLLRAIFGEKASDV 913 G+ ++D+SGI+ I + + P + +P ++ + G A ++ Sbjct: 616 GDGDYYEIDKSGILGI----------IAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNI 665 Query: 914 K---DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG 970 + D ++ N + ++ + + V+ + L D+ + L I + Sbjct: 666 RTRTDPTMYTVNYLQSPIVRTE--GYEMVKDYPVGINCMVAVLSYTAYDMEDALVINKNS 723 Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE 1030 I L G V + L + + + ++ + + L D+ E+EK+ Sbjct: 724 ----IDRGLFTGYVYKTEKVPLDKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYL 779 Query: 1031 --AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD 1088 + + + R GDK + RHG KGV S P DMP+ Sbjct: 780 GTEPGIVDIVRVFENDMGERCATFTIRIVRSPMIGDKFSSRHGQKGVCSMHWPGIDMPFT 839 Query: 1089 ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 E+G DI++NP PS IG I ++ A Sbjct: 840 ESGCVPDIIINPHAFPS---------------RMTIGMLIESI----------------A 868 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 +G + D + F ++ E + + + L+ G Sbjct: 869 GKVGCLSGNEQDGTVFKKSFLLEQEEGDDEKVRRK---------EYLCSELRRHGFNYYG 919 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 +Y G G +F + VG +Y +L H+V DK R+ G+ T+QP+GG+ + GG Sbjct: 920 NEPMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVRTKGAVVSTTRQPVGGRKKRGGI 979 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSDD-VNGRTKMYKN---------IVDGNHQMEPG 1318 RFGEME AL ++GA+Y LQ+ L SD V ++ I + Sbjct: 980 RFGEMERDALISHGASYLLQDRLLKSSDSTVFEYCGTCRSILFTNNGDCICGSSDLKAVE 1039 Query: 1319 MPESFNVLLKEIRSLGINIELED 1341 MP F L E+ ++ I ++++ Sbjct: 1040 MPYVFKYLCCELLAMNIKVQIDL 1062 Score = 76.8 bits (187), Expect = 6e-12, Method: Composition-based stats. Identities = 39/254 (15%), Positives = 83/254 (32%), Gaps = 63/254 (24%) Query: 12 RKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYV 71 P +++ ++++ + L+ V P+ G +++ Sbjct: 3 HHSRKIYPCRMELKDAAKAHIEAYNAIFNGNI-----LDNLVAGVPPLV--KGKTKIIVE 55 Query: 72 SYRLGEP------------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 + P +EC+ RG+TY + V++ L K + Sbjct: 56 EIHVAPPFLSDKDHISVDRRLLPRECRERGLTYKGKMVVRVSL--------FHDNKHVVT 107 Query: 120 QEVYMGEIPLMTDN----------------------GTFVINGTERVIVSQLHRSPGVFF 157 ++ G P+M + G F+ING +R I + + F Sbjct: 108 EDKSAGHFPIMVRSTLCHLNGIKNKNEVGEDEDEIGGYFIINGIDRFIRFNIMQKRNHIF 167 Query: 158 DSDKGKTHSSGKVLYNARIIPYRGSWLD-------FEFDPKDNLFVRIDRRRK---LPAT 207 K S ++ ++ R D + N+ ++I ++ P Sbjct: 168 AFKMRKKTSF----FSDYMVSMRCVGRDEIGHMNFLHYCTDGNVVIKIFHKKYEFLFPLV 223 Query: 208 IILRALNYTTEQIL 221 ++L+AL TT++ L Sbjct: 224 LVLKALVNTTDEEL 237 >UniRef50_D0FY16 DNA-directed RNA polymerase n=1 Tax=Dunaliella salina RepID=D0FY16_DUNSA Length = 924 Score = 329 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 141/406 (34%), Positives = 208/406 (51%), Gaps = 42/406 (10%) Query: 935 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 994 + + + + +I L+ ++ ++ + + +G + Sbjct: 516 SINDNKILSQQNKISSENLRSGTREGTKNFSLGQNNKIVLSGK--FSGQSRVINFSNFSQ 573 Query: 995 DRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYL 1054 + + Q + KKL+ K K + ++ + +YL Sbjct: 574 LSSYTKKFRKNPRVLRTLQTLVDGQLKNLKIMKKLKNKAEKGGFVSTKSIKDIETIHIYL 633 Query: 1055 AVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILE 1114 A KR+IQ GDKM+GRHGNKG++S+I P++DMP+ +GTP+D+VLNPLGVPSRMN+GQI E Sbjct: 634 AEKRKIQVGDKMSGRHGNKGIVSQILPMQDMPFLPDGTPIDMVLNPLGVPSRMNVGQIYE 693 Query: 1115 THLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAE 1174 LG+A K +G+ + G + + S + + Sbjct: 694 CLLGLAGKYLGEHYKISSFDE--------------IYGPEASRSFVFSKLYEARCKTGFK 739 Query: 1175 NLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLK 1234 L + G+IRLYDGRTG+ + +PVTVG YML+ Sbjct: 740 -------------------------WLFNPQYPGKIRLYDGRTGDCYHQPVTVGQSYMLR 774 Query: 1235 LNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK 1294 L H+VDDK+H RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLTVK Sbjct: 775 LVHMVDDKIHMRSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWALEGYGAAFTLLEMLTVK 834 Query: 1295 SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 SDD+ GR ++ N++ G PE+F VL+ E+++L ++I L Sbjct: 835 SDDLTGRMTLWSNLILNKDL-TIGTPEAFKVLICELQALCLDIGLY 879 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 66/291 (22%), Positives = 114/291 (39%), Gaps = 31/291 (10%) Query: 749 DIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWN 808 Y L + RSNQ+TC+ P V G+ V+ GD L D ++ GEL+LGQN+ +A+MPW Sbjct: 93 TEYKLETFHRSNQDTCLTHKPAVFEGDWVQSGDFLTDCANSVGGELSLGQNIFIAYMPWE 152 Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 GYNFED+IL+SER+V +D FT++HI+ + +L Sbjct: 153 GYNFEDAILISERLVSDDLFTSVHIERYEIENIQKDGIS-------------QQERLTNK 199 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 I + + + ++ L K S + +S + + +S Sbjct: 200 EINEKMKSKEKQTVARSAIRADENREYARKQNL-------KNSQTRQTSQKTKSNIS--- 249 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 Q+ T E + ++ ++ + I++ G +LV K Sbjct: 250 ---QIRTTRYEEITRDIPDVTPEEICHL-----DSFGIVKIGSIVEEGDILVGKITPINK 301 Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 D P + L L + + + L + K+ K + + Sbjct: 302 KDFTPYQKLLYTILDKQIRPYRDSSLRAPKGIKAKVIDIKIFVKPGSVVRS 352 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 83/209 (39%) Query: 820 ERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTG 879 ++ ++ + + + +S+ EEIT DIP+V + LD GIV IG+ V Sbjct: 229 KQNLKNSQTRQTSQKTKSNISQIRTTRYEEITRDIPDVTPEEICHLDSFGIVKIGSIVEE 288 Query: 880 GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGV 939 GDILVGK+TP + TP +KLL I ++ +DSSLR P G+ VID+++F + G Sbjct: 289 GDILVGKITPINKKDFTPYQKLLYTILDKQIRPYRDSSLRAPKGIKAKVIDIKIFVKPGS 348 Query: 940 EKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + K S+ + + + +R + + Sbjct: 349 VVRSPFAYSSKFLKTDPPKRSSKLEKSKKVRVKARSEEKSFDFSSPKKNNLIVRSSPVKA 408 Query: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKK 1028 QL + L K Sbjct: 409 APKQKRNAYLQLLKKISSSSNLNKFIHIK 437 >UniRef50_A8I793 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii RepID=A8I793_CHLRE Length = 720 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 101/563 (17%), Positives = 174/563 (30%), Gaps = 142/563 (25%) Query: 821 RVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG 880 + ++ T + ++ ++ T P ++ Sbjct: 259 AMAKQTMGTPGQATQHRTDTKVYRIQ----TPQAPICRTIRYAEYKMDEFP--------- 305 Query: 881 DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVE 940 + A+ D++D+ + + V + ++ + V Sbjct: 306 ----------------NGTNAIVAVLAYTGYDMEDAMILNKSAVERGLAHASLYKTECVN 349 Query: 941 KDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL 1000 + E G + D++ D + Sbjct: 350 LKE------------------------ERGGGGKQYFAATPHTQMTRDGDRIEPDGLPAV 385 Query: 1001 GLTDEEKQNQLEQLAEQYDELK--HEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKR 1058 G Q +Q + K +++ + +G L G+ + + L R Sbjct: 386 GSIIWPGQVFYATRDDQSGKSKSHKLKGEEVAVVDQVGVEGRGLG-GLPQQANIRLRFNR 444 Query: 1059 RIQPGDKMAGRHGNKGVISKINPIEDMPYDE-NGTPVDIVLNPLGVPSRMNIGQILETHL 1117 GDK A RHG KGV+S + P DMP+ G D+++NP P Sbjct: 445 NPMIGDKFASRHGQKGVLSILWPDTDMPFCAATGIRPDLIINPHAFP------------- 491 Query: 1118 GMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLR 1177 + IG + +++ + GA Q VD S F + Sbjct: 492 --SRMTIGMLVESLVSKG----------------GALAGQFVDASPFQRADG-------- 525 Query: 1178 KGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 V G L+ GQ + G TG++ + +G +Y +L H Sbjct: 526 --------VEKGNATERWGAYLERQGFSRYGQETMISGVTGQEMPCDIYIGPVYYQRLRH 577 Query: 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD- 1296 +V DK RSTG + +T+QP+ G+ GG RFGEME +L A+GAAY L + L SD Sbjct: 578 MVSDKFQVRSTGPINAMTRQPIKGRKFGGGIRFGEMERDSLLAHGAAYLLHDRLHACSDY 637 Query: 1297 ---DVNGRTK--------------------------------MYKNIV--DGNHQMEPGM 1319 DV + + Sbjct: 638 HVADVCVSCGSLLAPLRKPAANADVTSNLMLGGGGGEGGGKTVCPVCCPGSSATIERVAL 697 Query: 1320 PESFNVLLKEIRSLGINIELEDE 1342 P F L E+ ++ I +ELE + Sbjct: 698 PYVFRFLAAELAAMNIKMELEIK 720 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 67/543 (12%), Positives = 140/543 (25%), Gaps = 79/543 (14%) Query: 492 MINAKPISAAVKEFFGSSQL--------------SQFMDQNNPLSEITHKRRISALGPGG 537 + + + + + L + ++ N ++H R ++ G Sbjct: 5 LKKLGDVGSKFEYLLNTGNLVSRSGLDLSQATGFTVVAEKLNFFRYLSHFR---SVHRGA 61 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 E VR + P +G +CP+ TP+G GL+N + G + Sbjct: 62 YFAELRTTTVRKLLPESWGFMCPVHTPDGAPCGLLNHFTAACSIVTQGSSNEELTSLGIM 121 Query: 598 VVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 V + A + + +G V RS ++ ++ + V Sbjct: 122 QVLTALGMSPAAPALSPPPPPDYLCVQLDGRVVG---HVRSGAAAAALVPYHLEVVHV-- 176 Query: 658 QQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAV 717 P L + + R P ++ + G V Sbjct: 177 -----------PPLLGGPFPGVFLFSQSARMIRPVVQVRGRGLRGGGGERGRKWGCVREW 225 Query: 718 AKRGGVVQYVDASRIVIKVNE-----------DEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 G+ + M G R++ Sbjct: 226 RHGEGLSVLHVHPLPRRRPRRQPRPGLHARRAGAMAKQTMGTPGQA--TQHRTDTKVYRI 283 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P + + + D E G N VA + + GY+ ED++++++ V+ Sbjct: 284 QTPQAPICRTIRYAEYKMD-------EFPNGTNAIVAVLAYTGYDMEDAMILNKSAVERG 336 Query: 827 RFTTIHIQELACVSRDTKLGPEEITA-DIPNVG-EAALSKLDESGIVYIGAEVTGGDILV 884 + ++ + G + P+ +++ G+ +G+ + G + Sbjct: 337 LAHASLYKTECVNLKEERGGGGKQYFAATPHTQMTRDGDRIEPDGLPAVGSIIWPGQVFY 396 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 K S ++ V V V R ++ Sbjct: 397 A---------------------TRDDQSGKSKSHKLKGEEVAVVDQVGVEGRGLGGLPQQ 435 Query: 945 ALEIEE--MQLKQAKKDLSEELQILEAGLFSRIRAVLV-AGGVEAEKLDKLPRDRWLELG 1001 A K S Q + + A L P + Sbjct: 436 ANIRLRFNRNPMIGDKFASRHGQKGVLSILWPDTDMPFCAATGIRPDLIINPHAFPSRMT 495 Query: 1002 LTD 1004 + Sbjct: 496 IGM 498 >UniRef50_B3RKF5 DNA-directed RNA polymerase n=2 Tax=Metazoa RepID=B3RKF5_TRIAD Length = 780 Score = 323 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 93/730 (12%), Positives = 190/730 (26%), Gaps = 134/730 (18%) Query: 401 GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMA 460 + N + +I +++KL + NG+ +++ D N+ I G M Sbjct: 3 NCLFNNLRNCIAVHLDRNEDKFNLLIYMIRKLYAVANGECQIESQDSPMNQEILLGGHMY 62 Query: 461 ENQFRVGLVRVERAVKERL-------SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQ 513 + L VK + + L+ + + N I ++ F + L Sbjct: 63 SMVLKEKLELWLSRVKNLILKYMAKTNDEKLENAIVRAANNGTNIPNQLEYFLATGNLVA 122 Query: 514 --------------FMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVC 559 D+ N + ++H R ++ G E VR + P +G +C Sbjct: 123 RADLGLMQVAGYVLVADRLNFMRFVSHFR---SVHRGSFFTEMRTTAVRKLLPEAWGFLC 179 Query: 560 PIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQA 619 P+ TP+G GL+N L+ + T + + IE + + Sbjct: 180 PVHTPDGAPCGLLNHLAASCKVVTKMSDTTKLVSTLYELGMLSLSD-PLIEYSSAHVVIL 238 Query: 620 NSNLDEE------GHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 + + + L + + ++ + + + L F Sbjct: 239 DGKIVGYIQKEIGKEIADKLRYLKINNMDMVDPSTEIALVHDG---ISGLYNGLYLFTSP 295 Query: 674 DDANRALMGANMQRQAVPT--LRADKPLVGTGMERAVA-----VDSGVTAVAKRGGVVQY 726 R + +Q+Q + + + T E S + ++ + + Sbjct: 296 ARMIRPVTNLRLQKQEMIGTFEQVFMDICITAEEAYAEVTTHQELSPCSMLSALARLTPF 355 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADG 786 D ++ + + +M G I + RS+ Q Sbjct: 356 SDFNQSPRNMYQCQMGKQTMGTPIQSFKY--RSDNKLYRIQ------------------- 394 Query: 787 PSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 GY+ ED++++++ V+ + Sbjct: 395 ----------------------GYDMEDAMILNKSSVERGFAHATIYKSEVINLNSKTAD 432 Query: 847 PEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIF 906 EI P G +D G+ IG+ + GD + Sbjct: 433 GLEIFGQTP--GTTDSDNIDLDGLPKIGSILNSGDPYYCTLNLSTSQ------------- 477 Query: 907 GEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALE---IEEMQLKQAKKDLSEE 963 G V DV++ D K + + E K S Sbjct: 478 --------CVVHYYRGQEQGIVDDVKLLGSDSGRKPLQRICVKFRIERNPIIGDKFSSRH 529 Query: 964 LQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD-----------------EE 1006 Q I + + P + + + Sbjct: 530 GQKGVCSQLWPIENMPFTESGMTPDILFNPHGFPSRMTIGMMIESMAGKSASLHGLCHDA 589 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLE-----AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 Q + D EK + G++ + Y ++ Sbjct: 590 TPFQFSEKVSAVDYFGKYLEKAGYNYFGTERMYDGMSGEEFEANIFIGTVYYQRLRH--M 647 Query: 1062 PGDKMAGRHG 1071 DK R Sbjct: 648 ISDKFQVRTT 657 Score = 322 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 105/564 (18%), Positives = 184/564 (32%), Gaps = 119/564 (21%) Query: 815 SILVSERVVQEDR-------FTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 + + R+ +++ F I I + T E + + D Sbjct: 300 RPVTNLRLQKQEMIGTFEQVFMDICITAEEAYAEVTTHQ-ELSPCSMLSALARLTPFSDF 358 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGT 927 + + G TP + + KL R + D++D+ + + V Sbjct: 359 NQSPRNMYQCQMGK--QTMGTPIQSFKYRSDNKLYR----IQGYDMEDAMILNKSSVERG 412 Query: 928 VIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE 987 ++ + + + + A + Sbjct: 413 FAHATIYKSEVINLNSK-----------------------TADGLEIFGQTPGTTDSDNI 449 Query: 988 KLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVL 1047 LD LP+ L + L+ + + ++ G D L Sbjct: 450 DLDGLPKIG---SILNSGDPYYCTLNLSTSQCVVHYYRGQEQGIVDDVKLLGSDSGRKPL 506 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 + + V ++R GDK + RHG KGV S++ PIE+MP+ E+G DI+ NP Sbjct: 507 QRICVKFRIERNPIIGDKFSSRHGQKGVCSQLWPIENMPFTESGMTPDILFNP------- 559 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDE 1167 H + IG I +M A + D + F Sbjct: 560 --------HGFPSRMTIGMMIESM----------------AGKSASLHGLCHDATPFQFS 595 Query: 1168 EVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTV 1227 E + + + L+ G R+YDG +GE+FE + + Sbjct: 596 EKV-------------------SAVDYFGKYLEKAGYNYFGTERMYDGMSGEEFEANIFI 636 Query: 1228 GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1287 G +Y +L H++ DK R+TG +T+QP+ G+ + GG RFGEME AL ++G ++ L Sbjct: 637 GTVYYQRLRHMISDKFQVRTTGPIDSLTRQPVQGRKRAGGVRFGEMERDALISHGTSFLL 696 Query: 1288 QEMLTVKSD----DVNGRTKM-------------------------YKNIVDGNHQMEPG 1318 Q+ L SD V + + Sbjct: 697 QDRLLNCSDKSVAHVCKKCGSVLGITTDVNKNEADIFREFSRKVYRCTTCDSTQEVTKMY 756 Query: 1319 MPESFNVLLKEIRSLGINIELEDE 1342 +P + L+ E +L I +E E Sbjct: 757 LPYVYLYLVTEFAALNIKAVIEVE 780 >UniRef50_P33811 DNA-directed RNA polymerase 132 kDa polypeptide n=71 Tax=root RepID=RPO2_VARV Length = 1164 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 198/1252 (15%), Positives = 369/1252 (29%), Gaps = 213/1252 (17%) Query: 144 VIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK 203 V L + Y+ I +G D N+F + + Sbjct: 52 VKRPLLSFKNNTERIMIEISNVKVTPPDYSPIIASIKGKSYDALATFTVNIFKEVMAKEG 111 Query: 204 LPATIILRALNYTTE--QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKV 261 + T I + +I L + K + V + S + V Sbjct: 112 ISITKISSYEGKDSHLIKIPLLIGYGNKNPLDTAKYLVPNVIGGVFINKQSVEKVGINLV 171 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 R ++ P + + + + + + Sbjct: 172 EKITTWPKF-RVVKPNSFTFSFSSVSPPNILPTRYRHYKISLDISQLEASNISSTKTFIT 230 Query: 322 LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY-RMMRPGEPPTREA 380 + + +I +L D + + + I R E T Sbjct: 231 VNI--------VLLSQYLSRVSLGFIRRSLSYDMPPEVVYLVNAIIDSAKRLTESITDFN 282 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI----LSKDDIIDVMKKLIDIR 436 ++ +L +E S + +F +L + L +I +++K + Sbjct: 283 IDTYINDLVEAEHVKQKSQLTINEFKYEMLHNFLPHMNYTPDQLKGFYMISLLRKFLYCI 342 Query: 437 NGKGEVDDIDHLGNRRIRSVGEM--------AENQFRVGLVRVERAVKERLSLGDLDTLM 488 D D + RI + G+ EN + K R + ++ Sbjct: 343 YYTSRYPDRDSMVCHRILTYGKYFETLAHDELENYIGNIRNDIMNNHKNRGTYAVNIHVL 402 Query: 489 PQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVR 548 +N S +F S + + + I+ R + + F VR Sbjct: 403 TTPGLNHAFSSLLSGKFKKSDGSYRTHPHYSWMQNISIPRSVGFY--PDQVKISKMFSVR 460 Query: 549 DVHPTHYGRVCPIETPE-GPNIGLINSLSVYAQT-----NEYGFLETPYRKVTDGVVTDE 602 HP+ Y C + PE GP +GL++ LSV + +EY LE + D+ Sbjct: 461 KYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLEKKICEYIRSYYKDD 520 Query: 603 IHYLS---AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES-SLFSRDQVDYMDVSTQ 658 I Y I N ++A N N+ FV D + G +L + ++ Sbjct: 521 ISYFETGFPITIENALVASLNPNM--ICDFVTDFRRRKRMGFFGNLEVGITLVRDHMNEI 578 Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 ++ L+ D +M V +E + + Sbjct: 579 RINIGAGRLVRPFLVVDNGELMM-----------------DVCPELESRLDDMTFSDIQK 621 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 + V++ VD + + + ++K R + C Sbjct: 622 EFPHVIEMVDIEQFTFSNVCESVQKFRM------MSKDERKQYDLC-------------- 661 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 D P+ + + +N ++ ++ I Sbjct: 662 ------DFPAEFRDGYVASSLVGI------NHNSGPRAILGCAQAKQ----AISCLSSDI 705 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 ++ G + + P V AL K+ Sbjct: 706 RNKID-NGIHLMYPERPIVISKALE--------------------TSKIAANCF-----G 739 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK---DKRALEIEEMQLKQ 955 + + A+ K + +D G +I Q R G++ K +EI Sbjct: 740 QHVTIALMSYKGINQED----------GIIIKKQFIQRGGLDIVTAKKHQVEIPLENFNN 789 Query: 956 AKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLA 1015 ++D S LE+ R+ A L +G A + T E+ + Q++ Sbjct: 790 KERDRSNAYSKLESNGLVRLNAFLESGDAMARNISS----------RTLEDDFARDNQIS 839 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 E + K + + +L V V+V +RR GDK R KG Sbjct: 840 FDVSEKYTDMYKSRVERVQV-----ELTDKV--KVRVLTMKERRPILGDKFTTRTSQKGT 892 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA-------AKGIGDKI 1128 ++ I ++PYDENG D+++N + SR I ++E L A KG + Sbjct: 893 VAYIADETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSAKPYNNKGENRPV 952 Query: 1129 NAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFD 1188 + + +F ++ Y+ Sbjct: 953 CFPSSNETSIDTYMQFAKQCYEHLNPK--------------------------------- 979 Query: 1189 GAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST 1248 E E+ + + + LYD T + + V G +Y L+L HL DK R Sbjct: 980 -LTEKELSDKI-------FCEKILYDPETDKPYASKVFFGPIYYLRLRHLTQDKATVRCR 1031 Query: 1249 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV-----NGRTK 1303 G + + +Q G+ + GG +FGEME L A+GAA T+ E+L +D Sbjct: 1032 GKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSEEDYQDVYICENCG 1091 Query: 1304 -------------MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + V L ++ + G+ ++L+ E Sbjct: 1092 DIAAQIKSINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVKVKLDFE 1143 Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats. Identities = 138/1089 (12%), Positives = 303/1089 (27%), Gaps = 157/1089 (14%) Query: 1 MVYSYTEKKRIRKDFGKR---PQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF 57 M + + R + P+ L Q S+ FI ++ S Sbjct: 1 MKKNTDSEMDQRLGYKFLVPDPKAGVFYRPLHFQYVSYSNFILHRLHEILTVKRPLLSF- 59 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL---VIYEREAPEGTV 114 ++ + ++ + ++ P + I+G +Y A + + V+ + + Sbjct: 60 --KNNTERIMIEISNVKVTPPDYSPIIASIKGKSYDALATFTVNIFKEVMAKEGISITKI 117 Query: 115 KDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174 + ++ ++ +IPL+ G T + +V + GVF + + Sbjct: 118 SSYEGKDSHLIKIPLLIGYGNKNPLDTAKYLVPNVIG--GVFINKQSVEKVGIN------ 169 Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 ++ +W F ++ Sbjct: 170 -LVEKITTWPKFRVVKPNSFTFSFSSVS-------------------------------- 196 Query: 235 NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 ++P R R S DI + + +I L + + + Sbjct: 197 ---PPNILPTRYRHYKISLDISQLEASNISSTKTFITVNIVLLSQ------YLSRVSLGF 247 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + Y + A ++ + L + I + + +E ++ Sbjct: 248 IRRSLSYDMPPEVVYLVNAIIDSAKRL--------TESITDFNIDTYINDLVEAEHVKQK 299 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 E+ P T + + + ++ R Sbjct: 300 SQLTINEFKYEMLHNFLPHMNYTPDQLKGF-----------YMISLLRKFLYCIYYTSRY 348 Query: 415 EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474 + I+ K + + + EN + Sbjct: 349 PDRDSMVCHRILTYGKYFETLAHDE--------------------LENYIGNIRNDIMNN 388 Query: 475 VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534 K R + ++ +N S +F S + + + I+ R + Sbjct: 389 HKNRGTYAVNIHVLTTPGLNHAFSSLLSGKFKKSDGSYRTHPHYSWMQNISIPRSVGFY- 447 Query: 535 PGGLTRERAGFEVRDVHPTHYGRVCPIETPE-GPNIGLINSLSVYAQT-----NEYGFLE 588 + F VR HP+ Y C + PE GP +GL++ LSV + +EY LE Sbjct: 448 -PDQVKISKMFSVRKYHPSQYLYFCSSDVPERGPQVGLVSQLSVLSSITNILTSEYLDLE 506 Query: 589 TPYRKVTDGVVTDEIHYLS---AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGES-SL 644 + D+I Y I N ++A N N+ FV D + G +L Sbjct: 507 KKICEYIRSYYKDDISYFETGFPITIENALVASLNPNM--ICDFVTDFRRRKRMGFFGNL 564 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 + ++ ++ L+ D +M + ++ + Sbjct: 565 EVGITLVRDHMNEIRINIGAGRLVRPFLVVDNGELMMDVCPELESRLDDMTFSDIQKEFP 624 Query: 705 ERAVAVDSGVTAVA-KRGGVVQYVDASRIVIKVNEDEMYPGEA--GIDIYNLTKYTRSNQ 761 VD + V ++ S+ K + +P E G +L ++ Sbjct: 625 HVIEMVDIEQFTFSNVCESVQKFRMMSKDERKQYDLCDFPAEFRDGYVASSLVGINHNSG 684 Query: 762 NTCINQMPCVSLGEPVERGDV----------------LADGPSTDLGELA---LGQNMRV 802 I D+ + + + ++A GQ++ + Sbjct: 685 PRAILGCAQAKQAISCLSSDIRNKIDNGIHLMYPERPIVISKALETSKIAANCFGQHVTI 744 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 A M + G N ED I++ ++ +Q + ++ +E A Sbjct: 745 ALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKHQVEIPLENFNNKER------DRSNAY 798 Query: 863 SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPN 922 SKL+ +G+V + A + GD + ++ + + + D S + + Sbjct: 799 SKLESNGLVRLNAFLESGDAMARNISSRTLEDDFARDNQISF----------DVSEKYTD 848 Query: 923 GVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAG 982 V VQV + R L ++E + K + Q + + Sbjct: 849 MYKSRVERVQV--ELTDKVKVRVLTMKERRPILGDKFTTRTSQKGTVAYIADETELPYDE 906 Query: 983 GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 + + ++ +E + K K + + Sbjct: 907 NGITPDVIINSTSIFSRKTISM-----LIEVILTAAYSAKPYNNKGENRPVCFPSSNETS 961 Query: 1043 APGVLKIVK 1051 ++ K Sbjct: 962 IDTYMQFAK 970 >UniRef50_UPI0001926601 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001926601 Length = 1371 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 88/403 (21%), Positives = 138/403 (34%), Gaps = 81/403 (20%) Query: 971 LFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELK--HEFEKK 1028 + + K L +D +G + E K + Sbjct: 1019 NAIQPEILRSDEESSTFKSGLLGKDGLPPIGRFMQHGDPYYSYYHIINGEYKTVKYKHME 1078 Query: 1029 LEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD 1088 G D L V + L ++R GDK A RHG KG++S P E+MP+ Sbjct: 1079 PAYIDDIKILGSDKGDRELLKVSIKLRIQRNPIIGDKFASRHGQKGILSVKWPAENMPFT 1138 Query: 1089 ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 E+G DI+ NP H + IG I +M + Sbjct: 1139 ESGMIPDIIFNP---------------HGFPSRMTIGMMIESMAGKSA------------ 1171 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 A D + F E A + E+L G Sbjct: 1172 ----ALHGITHDSTPFIFSEKKPAAH-------------------YMGEILVKAGYNYYG 1208 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ 1268 R+Y G G++ + + +G +Y +L H+V DK RSTG +T QP+ G+ + GG Sbjct: 1209 NERMYSGINGKEMDVDIFIGIVYYQRLRHMVADKYQVRSTGPVDNLTHQPVQGRKRQGGI 1268 Query: 1269 RFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK--------------------- 1303 RFGEME AL A+G+ + L + L SD V + Sbjct: 1269 RFGEMERDALIAHGSGFLLHDRLFNCSDRCETHVCTKCGSIFTPIVRKPVTHHDSLIGFN 1328 Query: 1304 ----MYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + G+ + +P F L+ E+ ++ I + L+ + Sbjct: 1329 DRKWFCRVCGHGDDIQKMLVPYVFKYLIAELTAMNIRLVLDVK 1371 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 83/696 (11%), Positives = 195/696 (28%), Gaps = 91/696 (13%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGS-WLDFEFDPKDNLFVRID 199 E I+ +P V ++ KT R Y+ + ++ L + Sbjct: 67 AEISILDCSIGTPVVDDNNFTSKTQRVYPAECRERHCTYKAKLTVTLQWKINGVLQGSVT 126 Query: 200 RR-RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG---ETASFDI 255 + ++P + + + L + E + + + LR + ++ + Sbjct: 127 KSIAQVPVMVKSKNCSLANLTPAQLIEKHEEAEEWGGYFIVNGIEKILRMLVMQRRNYPL 186 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 K + +G T + V + + + V D S Sbjct: 187 AMVRKSWKSRGPLFT--------EFGVSIRSIQKDQSGNINVLHYLTDGSFTLSFIHQKE 238 Query: 316 ELSLDLLAKLSQSGHKRIETLFT--NDLDHGPYI--------SETLRVDPTNDRLSALVE 365 + + L L + ++ TL + + L Sbjct: 239 QFFVPLALILKALTANSDQYIYKQLLHGKEDDIFFKDVVVNMLRTLNDENLLSQNDVLKY 298 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDI 425 + R + + + F +L + + Sbjct: 299 MGMRFRI---------------KVNLPEWTSDEDIAKYMFQTCVLVH--LEKITDKFNLL 341 Query: 426 IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 I + +KL + N K + D+ N + G + Sbjct: 342 IYMTQKLFALANDKCAAESPDNPMNHEVLLGGHTYLLVLKQ------------------- 382 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 M + +S + ++ +S D+ N + ++H R + G E Sbjct: 383 --MESFLATGNILSKSGLGLMQATGMSVVADKLNFMRYLSHFR---CIHRGAFFTEMRTT 437 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 VR + P +G +CP+ TP+G GL+N L+ + + + K+ + Sbjct: 438 TVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAAACKVENTKYPTSDLIKLLVKLGMQLCDM 497 Query: 606 LSAIEEGNYVIAQANSNLDE------EGHFVEDLVTCRSKGESSLFSRDQVDYMDV---- 655 + +Y + + + L ++ + + ++ ++ Sbjct: 498 DLGLASDSYS-VLLDGCVVGRLRSHISEEVCKKLRVFKALQKEMVPPTMEIIFIPRTKFA 556 Query: 656 ---STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT-LRADKPLVGTGMERAVAVD 711 + + A +I + + N + ++ + + +D+ T + Sbjct: 557 SQYEGIFLFTDVARMIRPVRNLLTNTVEYIGSFEQVYMDIAVYSDEIHAPTTTHMELND- 615 Query: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 +++ + Y D ++ + + +M G L RS+ Q P Sbjct: 616 --CAMLSELATLTPYSDFNQSPRNMYQCQMGKQTMGTPCQALK--HRSDNKMYKIQTPQA 671 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 L + D LG N VA + + Sbjct: 672 PLVRNKTYSEYGVDN-------FPLGTNAVVAVISY 700 Score = 92.6 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 82/264 (31%), Gaps = 59/264 (22%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEP----- 78 + + ++SF +E L F + +E+ + +G P Sbjct: 28 LQEFIQPHIESFNYILENGLNEAVKL--IIPQEFELPD-GRRAEISILDCSIGTPVVDDN 84 Query: 79 -------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT 131 EC+ R TY A L V L+ I T + ++P+M Sbjct: 85 NFTSKTQRVYPAECRERHCTYKAKLTVTLQWKINGVLQGSVTKS--------IAQVPVMV 136 Query: 132 DN------------------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSS 167 + G F++NG E+++ + + + + K+ S Sbjct: 137 KSKNCSLANLTPAQLIEKHEEAEEWGGYFIVNGIEKILRMLVMQRRN-YPLAMVRKSWKS 195 Query: 168 GKVLYNARIIPYRG---------SWLDFEFDPKDNL-FVRIDRRRKLPATIILRALN-YT 216 L+ + R + L + D L F+ + +P +IL+AL + Sbjct: 196 RGPLFTEFGVSIRSIQKDQSGNINVLHYLTDGSFTLSFIHQKEQFFVPLALILKALTANS 255 Query: 217 TEQILDLFFEKVIFEIRDNKLQME 240 + I +I + + Sbjct: 256 DQYIYKQLLHGKEDDIFFKDVVVN 279 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 21/259 (8%), Positives = 54/259 (20%), Gaps = 48/259 (18%) Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 + EI L + G+ IG + GD Sbjct: 1011 WNMLEEQWNAIQPEILRSDEESSTFKSGLLGKDGLPPIGRFMQHGDPYYSYYHII----- 1065 Query: 896 TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKD---KRALEIEEMQ 952 + + +++ + + D+++ D +++ + Sbjct: 1066 ----------------NGEYKTVKYKHMEPAYIDDIKILGSDKGDRELLKVSIKLRIQRN 1109 Query: 953 LKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDE------- 1005 K S Q + + + P + + Sbjct: 1110 PIIGDKFASRHGQKGILSVKWPAENMPFTESGMIPDIIFNPHGFPSRMTIGMMIESMAGK 1169 Query: 1006 ---------EKQNQLEQLAEQYDELKHEFEKK------LEAKRRKITQGDDLAPGVLKIV 1050 + + + E K + G ++ + + Sbjct: 1170 SAALHGITHDSTPFIFSEKKPAAHYMGEILVKAGYNYYGNERMYSGINGKEMDVDIFIGI 1229 Query: 1051 KVYLAVKRRIQPGDKMAGR 1069 Y ++ DK R Sbjct: 1230 VYYQRLRH--MVADKYQVR 1246 >UniRef50_A9CTL9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CTL9_ENTBH Length = 1066 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 97/553 (17%), Positives = 162/553 (29%), Gaps = 136/553 (24%) Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + +P+ +N + ++ ++ I R P + Sbjct: 638 IIANTIPFADHNPSPRNIYQCQMAKQAMG----IAAYNIKYRVDNKLYNINYLQHPLIQT 693 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 + + + A+ D++D+ + Sbjct: 694 SNYQC---------------------------FEKFPLGFNCIVAVLSYTGYDMEDAIIL 726 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 V+ + + + Sbjct: 727 NKASVNRGMFN---------------------------------------------GFIT 741 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQG 1039 + + EK DK+ +E L + + E K R Sbjct: 742 MNEKIILEKNDKILYTPPIESKLKTNDIMLTYKSDGIIKTVRYENIEMGSVEKIRVFQNS 801 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 L V + R GDK RHG KG+ + + DMP+ ENG DI++N Sbjct: 802 --LTEKSNLTVIFTFRILRNPVVGDKFCSRHGQKGICAFLWNEIDMPFTENGLKPDIIIN 859 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P PSRM IG ++E+ G AA G +N + + Sbjct: 860 PHAFPSRMTIGMLIESMCGKAAVKFGKFVNGDPFIDNKNNDI------------------ 901 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 + + LK G +Y G G Sbjct: 902 -----------------------------NVNKFNVNRKLKECGFNYYGNEPMYSGVFGT 932 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + + + +G +Y +L H+V DK R G+ + TQQP+ G+ GG RFGEME L Sbjct: 933 ELKTDIFIGLVYYQRLKHMVSDKFQVRVGGAITSTTQQPVKGRKNKGGIRFGEMEKDTLI 992 Query: 1280 AYGAAYTLQEMLTVKSDDVN-GRTKMYKNI----------VDGNHQMEPGMPESFNVLLK 1328 A+G++ +++ L SD KNI G MP F LL Sbjct: 993 AHGSSALIKDRLLDCSDKTTFKYCYKCKNILFSSPNDKCKCGGIKSKNIKMPYVFKYLLA 1052 Query: 1329 EIRSLGINIELED 1341 E+ + I +E + Sbjct: 1053 ELMGMNIKLEFDI 1065 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 121/1034 (11%), Positives = 249/1034 (24%), Gaps = 208/1034 (20%) Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 FV+N E++ + + + + Y+ I + + + LF Sbjct: 38 FVMN-FEKIEIHKPYVLKQDVDNRLLPHECRETGRTYSGNIF----VKIKLMY-KNEILF 91 Query: 196 VRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 +LP + + + +L K + +R F I Sbjct: 92 HDYRGAGQLPIMVKSNMCHLSMMTDQELLAVKEDPNEHGGFFIINGYDRIIR-----FHI 146 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + + V + I K +D + + Sbjct: 147 AHKRNWVFGIYSKPKNSIFSGYS---CSIRSVCDDEIGQKNEIVHTVDGNIFLKCFFYHK 203 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI-SETLRVDPTNDRLSALVEIYRMMRPGE 374 + ++ L + + ++T + I T P ++ L + + Sbjct: 204 GYLIPIIYILRALQNTTDKEIYTLLNQNPRAIEFLTKSNQPYYNKDECLNYLGSRFKHIF 263 Query: 375 PPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLID 434 + G NR L S I + +I + KL Sbjct: 264 ------------------RIDNYKEAGEELLNRIL---IHLSSHIDKFNLLIYSINKLFK 302 Query: 435 IRNGKGEVDDIDHLGNRRIRSVGEMA-------ENQFRVGLV-RVERAVKERLSLGDLDT 486 + +GK + +DID N + + ++ +F+ R+ + K + D Sbjct: 303 LIDGKIKSEDIDLSSNHELYTEAQLIPLCIKEHLEEFKKLFKTRIIKLFKREVKNQYRDN 362 Query: 487 LM-------PQDMINAKP---------------------------------ISAAVKEFF 506 D+++ I + +F Sbjct: 363 ETDTEITTQIDDIMSTNRSTNINDTVEFDKLFSDEFMIKKIVELFKKTDLDIGTKIHKFL 422 Query: 507 GSSQ--------------LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHP 552 + + + N +H +S G VR + P Sbjct: 423 STGNITTYNCSDLLQTSGFTFLSGRINYWEFASHFYSVS---RGAFFSNLKITSVRKLQP 479 Query: 553 THYGRVCPIETPEGPNIGLINSLSVYAQT--NEYGFLETPYRKVTDGVVTDEIHYLSAIE 610 +G CPI TP+G GL+ L+ + ++Y F ++ + Sbjct: 480 ESFGFFCPINTPDGSLCGLLTYLTQQCEITCSKYIFDTNILYQLGVSFINLN-------- 531 Query: 611 EGNYVIAQANSNLDE----EGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGAS 666 N + N + +EDL R K + + + + + Sbjct: 532 -NNMIPVFYNGKIMGYTSYPIKLIEDLRNYRCKNKLKIEIVYEFGDKIDEIISICDDISL 590 Query: 667 LIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQY 726 LI + + N ++ + E + + + + Sbjct: 591 LIRKVWNKKNNMEEYIGIKEQVFLDIELGTVHNTFNYKEIDIN-----NMFSIIANTIPF 645 Query: 727 VDASRIVIKVNEDEMYPGEAGIDIYNLTKY-TRSNQNTCINQMPCVSLGEPVERGDVLAD 785 D + + + +M GI YN+ N Q P + Sbjct: 646 ADHNPSPRNIYQCQMAKQAMGIAAYNIKYRVDNKLYNINYLQHPLIQTSNYQC------- 698 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 + LG N VA + + GY+ ED+I++++ V F + Sbjct: 699 -----FEKFPLGFNCIVAVLSYTGYDMEDAIILNKASVNRGMFNGFITMNEKIILEKNDK 753 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAI 905 + + GI+ Sbjct: 754 ILYTPPIESKLKTNDIMLTYKSDGIIK--------------------------------- 780 Query: 906 FGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK---RALEIEEMQLKQAKKDLSE 962 ++R N G+V ++VF EK K S Sbjct: 781 -----------TVRYENIEMGSVEKIRVFQNSLTEKSNLTVIFTFRILRNPVVGDKFCSR 829 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT------------------- 1003 Q + + P + + Sbjct: 830 HGQKGICAFLWNEIDMPFTENGLKPDIIINPHAFPSRMTIGMLIESMCGKAAVKFGKFVN 889 Query: 1004 ------DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057 ++ + + + F G +L + + Y +K Sbjct: 890 GDPFIDNKNNDINVNKFNVNRKLKECGFNYYGNEPMYSGVFGTELKTDIFIGLVYYQRLK 949 Query: 1058 RRIQPGDKMAGRHG 1071 DK R G Sbjct: 950 H--MVSDKFQVRVG 961 >UniRef50_Q7YN57 DNA-directed RNA polymerase subunit beta n=2 Tax=Eimeriorina RepID=RPOB_EIMTE Length = 1059 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 177/849 (20%), Positives = 337/849 (39%), Gaps = 32/849 (3%) Query: 174 ARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR 233 I Y G L + + T + + T ++ + +I+ Sbjct: 31 NSIKNYLGDKLYLYYKKNKYTIYILSDFLFFKTTNLTSNITDTVQEFNSKILIFLPLKIK 90 Query: 234 DNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 + K + L GE + IE N + K I+ + K I+ + Sbjct: 91 NLKNNKYKIIYYLLGEIPKYTIEKNLIINGLKKTFISKLMFNYIGIFFNKFIKNNNNILY 150 Query: 294 GKVVAKDYIDESTGE---LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET 350 K++ D + DL+ L G + + + Y+ + Sbjct: 151 AKIIFNDKFIINIVLEENKCYCIFNNYKYDLICFLYLLGISMQDIFIFSRYNKSFYLKKL 210 Query: 351 LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL- 409 L P+ + + + S F NL F + Y + K N Sbjct: 211 LLTLPSLNINNIINYNIFKY-----------LSFFFNLSFKLNTYYIFNKVLNKNNSLYS 259 Query: 410 LREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469 + S L D I+++ L+DI+ K + D+D L R I ++G NQ+ L Sbjct: 260 YIKNFSNSNNLIALDFINILDILLDIKYNKKNITDLDLLEYRSIFTLGNYFTNQYSFYLK 319 Query: 470 RVERAVKERL--SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHK 527 + + + + +L+ + +KE+ + L Q+++Q N SEI HK Sbjct: 320 KFSNILHNDIFKCIKNLEKYKLNTNSFKSKLYFNLKEYLTVNPLVQYLEQINSFSEIIHK 379 Query: 528 RRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFL 587 R++ ++ + ++R+++ G +C I+T EG N GL+ S + + + Sbjct: 380 NRVTNYN----SKLKQNLQIRNINLNQLGSLCLIDTTEGINCGLVISFTKNIKIEKRNNF 435 Query: 588 ETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSR 647 + PY V + + I ++++ + Y++ N L + F +K L + Sbjct: 436 QFPYLPVLNIKTKNFITFINSFLQQTYIVLFNNYYLRKNKLF-NFFNLSLNKNSFKLKNI 494 Query: 648 DQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERA 707 + + + + S +LIPF+ ++D R LMGA MQ Q VP L+ + ++ TG E+ Sbjct: 495 SIQNMIYIKPMDMFSFAENLIPFIFYNDPARVLMGAKMQSQIVPILKNKRSIIITGYEKN 554 Query: 708 VAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQ 767 + + + A + G+V YV + +I+I+ + Y L KY RSN T ++ Sbjct: 555 LLNSTNLILKAYQEGIVVYVSSYKIIIRDLYNRK-------ITYFLDKYKRSNHFTILHS 607 Query: 768 MPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDR 827 P V GE + G +L E G N+ V++ + GYNFED+I+++++++ Sbjct: 608 KPNVWQGERIFCGQILTSTQDILFSEYIGGNNLLVSYGNFFGYNFEDAIVLNKKIIYSQL 667 Query: 828 FTTIHIQELACVSR-DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 FT++H + + K E T ++P + LD GI+ G++V DILV K Sbjct: 668 FTSLHFKVYEIIFNSLNKFSFEISTINLPKKSFYSKRNLDFFGIIKEGSKVLNNDILVSK 727 Query: 887 VTPKG-ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR-DGVEKDKR 944 + L P L+ +FG++ ++KD S+ V G SG ++ ++F+ ++ Sbjct: 728 IFITNINISLLPLYNLIYILFGKEIKNIKDKSILVSFGNSGRIVKTELFSYSSKIKSYLG 787 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 + + + + + G I +L + + +P LG+ Sbjct: 788 YYLKCRVYICKQRLLSVGDKLCGRYGNKGIIAYILPSNDLPYTNTGIIPDIISDSLGIPS 847 Query: 1005 EEKQNQLEQ 1013 QL + Sbjct: 848 RMNIGQLFE 856 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 165/1148 (14%), Positives = 354/1148 (30%), Gaps = 143/1148 (12%) Query: 224 FFEKVIFEIRDNKLQMELVPERLRGETASFDIE--ANGKVYVEKGRRITARHIR-QLEKD 280 F K ++ K + L + + K + T + L Sbjct: 3 FQLKNFLILKTLKTFYIEYYKVLIYYLINSIKNYLGDKLYLYYKKNKYTIYILSDFLFFK 62 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTND 340 L + + + + ++ LL ++ + ++ + Sbjct: 63 TTNLTSNITDTVQEFNSKILIFLPLKIKNLKNNKYKIIYYLLGEIPKYTIEKNLIINGLK 122 Query: 341 -LDHGPYISETLRVDPTNDRLSALVEIYRMMRPGE-PPTREAAESLFENLFFSEDRYDLS 398 + + + + +Y + + E F+ +YDL Sbjct: 123 KTFISKLMFNYIGIFFNKFIKNNNNILYAKIIFNDKFIINIVLEENKCYCIFNNYKYDL- 181 Query: 399 AVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID----HLGNRRIR 454 + + +++ S + ++ L + +I N + Sbjct: 182 -ICFLYLLGISMQDIFIFSRYNKSFYLKKLLLTLPSLNINNIINYNIFKYLSFFFNLSFK 240 Query: 455 SVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI--------NAKPISAA----V 502 N+ + +K + +L L +++ N K I+ Sbjct: 241 LNTYYIFNKVLNKNNSLYSYIKNFSNSNNLIALDFINILDILLDIKYNKKNITDLDLLEY 300 Query: 503 KEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE 562 + F F +Q + ++ S + + + E ++ + Sbjct: 301 RSIFTLGNY--FTNQYSFY-----LKKFSNILHNDIFKCIKNLEKYKLNTNSFKSKLYFN 353 Query: 563 TPE----GPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQ 618 E P + + ++ +++ + K+ + I+ + Sbjct: 354 LKEYLTVNPLVQYLEQINSFSEIIHKNRVTNYNSKLKQNLQIRNINLNQLGSLCLIDTTE 413 Query: 619 ANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANR 678 + + R+ + + T+ ++ S + N Sbjct: 414 GINCGLVISFTKNIKIEKRNNFQFPYLPVLNI-----KTKNFITFINSFLQQTYIVLFNN 468 Query: 679 ALMGANMQRQAVPT-LRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVN 737 + N L + + + + + + ++ ++ + + Sbjct: 469 YYLRKNKLFNFFNLSLNKNSFKLKNISIQNMIYIKPMDMFSFAENLIPFIFYNDPARVLM 528 Query: 738 EDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALG 797 +M I + K RS T + S ++ Sbjct: 529 GAKMQSQ-----IVPILKNKRSIIITGYEKNLLNSTNLILKAYQE--------------- 568 Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV 857 + V + +++ D + + Sbjct: 569 -GIVVYVSSY-------------KIIIRDLYN-----------------RKITYFLDKYK 597 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 + L V+ G + G IL ++ LL + + +D+ Sbjct: 598 RSNHFTILHSKPNVWQGERIFCGQILTSTQDIL-FSEYIGGNNLLVSYGNFFGYNFEDAI 656 Query: 918 LRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRA 977 + + + F + + E+ K + L+ + + Sbjct: 657 VLNKKIIYSQLFTSLHFKVYEIIFNSLNKFSFEISTINLPKKSFYSKRNLDFFGIIKEGS 716 Query: 978 VLVAGGVEAEKL-------DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE 1030 ++ + K+ LP + + E K + + + + + +L Sbjct: 717 KVLNNDILVSKIFITNINISLLPLYNLIYILFGKEIKNIKDKSILVSFGNSGRIVKTELF 776 Query: 1031 AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDEN 1090 + KI G +VY+ +R + GDK+ GR+GNKG+I+ I P D+PY Sbjct: 777 SYSSKIK----SYLGYYLKCRVYICKQRLLSVGDKLCGRYGNKGIIAYILPSNDLPYTNT 832 Query: 1091 GTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD 1150 G DI+ + LG+PSRMNIGQ+ E G++ + ++ ++ + + Sbjct: 833 GIIPDIISDSLGIPSRMNIGQLFENLFGLSCYFLNKRLCISNTFNLPKVYIKTILYNYIN 892 Query: 1151 LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQI 1210 + L + + + G+I Sbjct: 893 NIKEKSGN----------------------------------------LWIYNSYSPGKI 912 Query: 1211 RLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRF 1270 L DGR G + P +G KL H++ DK+H R+ G Y+ + QQP+ G+ + GGQRF Sbjct: 913 LLRDGRQGYKLSEPSFLGISKYSKLIHMIKDKIHYRTIGPYTELMQQPVKGRNKKGGQRF 972 Query: 1271 GEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEI 1330 GEME+WA+EAYG++Y L+E+L KSDD+ RT + N+ + ESF L++EI Sbjct: 973 GEMEIWAIEAYGSSYNLRELLNYKSDDIIARTSLLSNLDNNIILDNITTTESFRTLIREI 1032 Query: 1331 RSLGINIE 1338 S+ +NIE Sbjct: 1033 HSMNLNIE 1040 >UniRef50_A6YGE0 DNA-directed RNA polymerase subunit beta C-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB2_LEPTE Length = 880 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 139/420 (33%), Positives = 214/420 (50%), Gaps = 43/420 (10%) Query: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + + + + ++ + L + +++ D + I++ G + + Sbjct: 487 LINYIKSLDVVIGGEIYRPGNKLQINLEYLNFKYGFVQKNNYDHLDNDGIIKLGTWVKPG 546 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKI 1036 ++V+ + P ++ + L + + D ++ + Sbjct: 547 DIIVSKLRPIGPHNPTPLEKLVAAILKKKFDDYKNAAFYTPKDVYGRIVGIEILEPKNLP 606 Query: 1037 TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDI 1096 + D+ + V+ YL KRRI GDKMAGRHGNKG+IS I P +DMPY +GTPVD+ Sbjct: 607 S---DVEYSGIGRVEFYLVDKRRIFVGDKMAGRHGNKGIISNILPKQDMPYLPDGTPVDM 663 Query: 1097 VLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVR 1156 VLNPLGVPSRMN+GQ+ ET LG+A K + + G + Sbjct: 664 VLNPLGVPSRMNVGQVFETLLGLAGKYLHQHFKVTPFDEVY--------------GPEAS 709 Query: 1157 QKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGR 1216 + + S + + + + D + G+ R++DG+ Sbjct: 710 RSLVYSKLYEARLKT-------------------------DQNWIFDPKSPGKTRIFDGQ 744 Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 TG F++ VT GY YMLKL HLVD K+HARSTG Y+LVTQQP+ G+++ GGQR GEME W Sbjct: 745 TGANFDQAVTAGYAYMLKLIHLVDHKIHARSTGPYALVTQQPVRGRSRAGGQRLGEMEFW 804 Query: 1277 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGIN 1336 ALEA+GA+Y LQEM+T+KSDD+ GRT+++ +I++ PESF V + E+RSLG+N Sbjct: 805 ALEAFGASYNLQEMMTIKSDDILGRTQVFDSILNSKPIQNSH-PESFRVFINELRSLGVN 863 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 3/163 (1%) Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGP 787 I+ + A + Y L Y RSNQ TCI Q P V LGE V++GD L D Sbjct: 35 HKKNIIPLNVDKARDVYRAHENSYFLDHYIRSNQATCITQRPSVKLGEWVQKGDFLCDTT 94 Query: 788 STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP 847 ++ GELALG+N+ VA+MPW+GYNFED+ILV+E ++ D +T++H+++ +T GP Sbjct: 95 ASSAGELALGKNILVAYMPWHGYNFEDAILVNETLIIYDIYTSLHLEKFEIEIENTNWGP 154 Query: 848 EEITADIPNVGEAALSKLDESGIVYI---GAEVTGGDILVGKV 887 E I + S + V I +G + Sbjct: 155 EIIKLSDWMFSDKRDSLYGKELFTQETTKQTYVKEKQITIGVL 197 Score = 96.5 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 4/188 (2%) Query: 856 NVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD 915 V + LD GI+ +G V GDI+V K+ P G TP EKL+ AI +K D K+ Sbjct: 522 FVQKNNYDHLDNDGIIKLGTWVKPGDIIVSKLRPIGPHNPTPLEKLVAAILKKKFDDYKN 581 Query: 916 SSLRVPNGVSGTVIDVQVF--TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973 ++ P V G ++ +++ + + + E L ++ + G Sbjct: 582 AAFYTPKDVYGRIVGIEILEPKNLPSDVEYSGIGRVEFYLVDKRRIFVGDKMAGRHGNKG 641 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKR 1033 I +L + D P D L L + N + + + Sbjct: 642 IISNILPKQDMPY-LPDGTPVDMVLN-PLGVPSRMNVGQVFETLLGLAGKYLHQHFKVTP 699 Query: 1034 RKITQGDD 1041 G + Sbjct: 700 FDEVYGPE 707 Score = 60.6 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 6/117 (5%) Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 RD E + + + + V +G V GD + T +L + Sbjct: 48 RDVYRAHENSYFLDHYIRSNQATCITQRPSVKLGEWVQKGD-FLCDTTASSAGELALGKN 106 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 +L A + +D+ L V+ T+I ++T +EK + +E + K Sbjct: 107 ILVAYMPWHGYNFEDAIL-----VNETLIIYDIYTSLHLEKFEIEIENTNWGPEIIK 158 >UniRef50_Q2TAM4 DNA-directed RNA polymerase n=6 Tax=Euteleostomi RepID=Q2TAM4_HUMAN Length = 952 Score = 312 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 86/574 (14%), Positives = 157/574 (27%), Gaps = 140/574 (24%) Query: 800 MRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGE 859 + F+P++ +N + ++ ++ + + ++ +L T P V Sbjct: 486 VIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQ----TPQSPLVRP 541 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 + D + A+ D++D+ + Sbjct: 542 SMYDYYDMD-------------------------NYPIGTNAIVAVISYTGYDMEDAMIV 576 Query: 920 VPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 V+ + ++ ++ + + + K LQ L+ Sbjct: 577 NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDG-------- 628 Query: 980 VAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE--LKHEFEKKLEAKRRKIT 1037 +G + L E + + K+ Sbjct: 629 -----------------LPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKV 671 Query: 1038 QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIV 1097 +D G K V + + V R Sbjct: 672 CSNDTGSGKFKCVCITMRVPRNP------------------------------------- 694 Query: 1098 LNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQ 1157 IG A G K E E L Sbjct: 695 ----------TIG-------DKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGF 737 Query: 1158 KVDLSTFSDEEVMRLAENLRKGMPIATPVF----DGAKEAEIKELLKLGDLPTSGQIRLY 1213 ++ E M G+ F + + E+LK G RLY Sbjct: 738 PSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLY 797 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 G +G + E + +G +Y +L H+V DK R+TG+ VT QP+GG+ GG RFGEM Sbjct: 798 SGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEM 857 Query: 1274 EVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM----------------------YKN 1307 E AL A+G ++ L + L SD V + Sbjct: 858 ERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTL 917 Query: 1308 IVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + +P F + E+ ++ I ++L+ Sbjct: 918 CSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 951 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 64/477 (13%), Positives = 129/477 (27%), Gaps = 70/477 (14%) Query: 628 HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQR 687 D R K + +V + ++ + S+ L F R + + + Sbjct: 393 ELPTDHTVLREK---RIPPWMEVVLIPMTGK--PSLYPGLFLFTTPCRLVRPVQNLALGK 447 Query: 688 QAVPTLRADKPLVGTGMERAVAVDS-------GVTAVAKRGGVVQYVDASRIVIKVNEDE 740 + + + E V + ++ + + D ++ + + + Sbjct: 448 EELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQ 507 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 M G + LT RS+ Q P L P D +G N Sbjct: 508 MGKQTMGFPL--LTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDN-------YPIGTNA 558 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDT-KLGPEEITADIPNVGE 859 VA + + GY+ ED+++V++ + + + K G + I Sbjct: 559 IVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDP 618 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLR 919 L KLD+ G+ +IGA++ GD + L E + + Sbjct: 619 RVLQKLDDDGLPFIGAKLQYGDPYYSYL------NLNTGESFV---------------MY 657 Query: 920 VPNGVSGTVIDVQVFTRD---GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976 + + V +++V + D G K K S Q Sbjct: 658 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 717 Query: 977 AVLVAGGVEAEKLDKLPRDRWLELGLTD--------------------EEKQNQLEQLAE 1016 + + P + + ++ E Sbjct: 718 DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE 777 Query: 1017 QYDELKHEFEKKLE--AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHG 1071 + E+ + G +L + V Y ++ DK R Sbjct: 778 YFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRH--MVSDKFQVRTT 832 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 40/335 (11%), Positives = 81/335 (24%), Gaps = 34/335 (10%) Query: 150 HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL-DFEFDPKDNLFVRIDR-RRKLPAT 207 SP K + R YRG D + I + +P Sbjct: 81 VISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIM 140 Query: 208 IILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 + + N L E + + + +R + + Sbjct: 141 VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKT 200 Query: 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQ 327 R V + V E+ A + + + L L L Sbjct: 201 RGPGYTQY-----GVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKA 255 Query: 328 SGHKRIETLFTNDL---DHGPYISETL-------RVDPTNDRLSALVEIYRMMRPGEPPT 377 +F + + ++ ++ + + L + R Sbjct: 256 LVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLTQKQVLNYLGECFR------ 309 Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 D Y FN+ + S + + +KL + Sbjct: 310 ---------VKLNVPDWYPNEQAAEFLFNQCICIH--LKSNTEKFYMLCLMTRKLFALAK 358 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 G D+ D L N+ + + G++ + L +E Sbjct: 359 GGCMEDNPDSLVNQEVLTPGQLFLMFLKGSLPLME 393 Score = 87.6 bits (215), Expect = 3e-15, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 73/268 (27%), Gaps = 65/268 (24%) Query: 14 DFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS--YSGNSELQ 69 +G + + L ++SF GL A +++ P + Sbjct: 23 SYGIPREQQKAALQELTRAHVESFNY------AVHEGLGLAVQAIPPFEFAFKDERISFT 76 Query: 70 YVSYRLGEPVF-----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 + + P EC+ R TY L + + Sbjct: 77 ILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQ---- 132 Query: 119 EQEVYMGEIPLMTDN------------------------GTFVINGTERVIVSQLHRSPG 154 ++G +P+M + G F+ING E+VI + Sbjct: 133 ----FLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRN 188 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSW-------LDFEFDPKDNLFVRIDRRR---KL 204 + K + Y + ++ + + + R+ L Sbjct: 189 FPIAMIRPK-WKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFL 247 Query: 205 PATIILRAL-NYTTEQILDLFFEKVIFE 231 P L+AL +++ QI + + Sbjct: 248 PLGFALKALVSFSDYQIFQELIKGKEDD 275 >UniRef50_UPI0000E487B4 PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide B n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E487B4 Length = 830 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 83/574 (14%), Positives = 179/574 (31%), Gaps = 64/574 (11%) Query: 143 RVIVSQLHRSPGVFFD-SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR 201 R +V Q S F + + + + A +P +L+ D + Sbjct: 53 RGLVRQHIDSFNYFINVEVFSMNFAPLQSTFPAEALP-YLQYLNIYVGSPDVEESFNITK 111 Query: 202 RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR-------------- 247 P LR + Y+ +D+ + + + N L + +P LR Sbjct: 112 PTSPHECRLRDMTYSAPITVDIEYTRGQQRVIRNNLPIGRMPIMLRSSNCVLTGKSPAEL 171 Query: 248 --------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 F + KV + + + R I ++++ + V + ++ Sbjct: 172 AKLNECPLDPGGYFIVRGTEKVILIQEQLSKNRMIVEVDRKGIVSCNVTSST--HERKSR 229 Query: 300 DYIDESTGELICAANM-ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI------SETLR 352 + G+ N + ++ G + + + + E Sbjct: 230 TVVIVKKGKHYLKHNTFTEDIPIVVIFKAMGMESDQEIVQTIGTEESTMVSFASNLEECH 289 Query: 353 VDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRE 412 +L AL + +R + +S + L+ + ++FN Sbjct: 290 KIQVYTQLQALKYMGMKVRQRRMWGGGSKKSKVDEARELLATTILAHIPVVQFN------ 343 Query: 413 EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 + +++++I+ + +VDD D+ GN+R+ G++ F + Sbjct: 344 -----FRAKSIYLALMVRRVIEAQGDAVKVDDRDYYGNKRLELAGQLIALLFEDLFKKFN 398 Query: 473 RAVKE----RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQF---MDQNNPLSEIT 525 +K+ + + I+ + + S M++ ++ Sbjct: 399 SELKKYADQNIPRPRAAQFDIVKYMRQDQITNGLITAISTGNWSVKRFKMERAGVTQVLS 458 Query: 526 HKRRISALGP-----GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQ 580 IS LG + R R + P+ +G +CP +TPEG GLI +L++ Sbjct: 459 RLSYISCLGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLIKNLALMTH 518 Query: 581 TNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY--VIAQANSNLDEE----GHFVEDLV 634 E P K+ + + +H +S E + N N+ + Sbjct: 519 ITTDME-EAPIVKLAFNLGVEPVHLMSGEELSMKDVYVVFLNGNILGVVREHKRLMRTFR 577 Query: 635 TCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLI 668 R G S F ++ + S G + Sbjct: 578 LVRRAGYISEFVSICPNHAQRCVT-IASDGGRVC 610 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 87/203 (42%), Gaps = 10/203 (4%) Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 + ++ E + + +G F G K +I E L+ G+ Sbjct: 624 QIMNPHGFPSRMTVGKLIEFLAGKAGVLEGKFHYGTAFGGDKVVDICEDLRKHGFNYLGK 683 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 L G TGE + G +Y KL H+V DKMHAR+ G +++T+QP G+A+ GG R Sbjct: 684 DFLTSGITGEPLTAYIYFGPVYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRARDGGLR 743 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRT------KMYKNIVDGNHQMEPGM 1319 GEME L YGA+ L E L + SD DV G + + Sbjct: 744 LGEMERDCLIGYGASMLLLERLMISSDQFQVDVCGDCGLIGHSGWCPYCHCSQNISSLRI 803 Query: 1320 PESFNVLLKEIRSLGINIELEDE 1342 P + +L +E++S+ I L + Sbjct: 804 PYACKLLFQELQSMNIIPRLRLK 826 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 51/251 (20%), Positives = 88/251 (35%), Gaps = 37/251 (14%) Query: 7 EKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNS 66 K ++ + P L V L+ +DSF FI + A +S FP ++ Sbjct: 35 PIKAVKDKWKLLPAFLKVRGLVRQHIDSFNYFINVEVFSMN--FAPLQSTFPAEALP--- 89 Query: 67 ELQYVSYRLGEPVF----------DVQECQIRGVTYSAPLRVKL---------------- 100 LQY++ +G P EC++R +TYSAP+ V + Sbjct: 90 YLQYLNIYVGSPDVEESFNITKPTSPHECRLRDMTYSAPITVDIEYTRGQQRVIRNNLPI 149 Query: 101 -RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDS 159 R+ I R + + + E PL G F++ GTE+VI+ Q S Sbjct: 150 GRMPIMLRSSNCVLTGKSPAELAKLNECPL-DPGGYFIVRGTEKVILIQEQLSKNRMIVE 208 Query: 160 DKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY-TTE 218 K S V + R + + +P +I +A+ + + Sbjct: 209 VDRKGIVSCNVTSSTHERKSRTVVI---VKKGKHYLKHNTFTEDIPIVVIFKAMGMESDQ 265 Query: 219 QILDLFFEKVI 229 +I+ + Sbjct: 266 EIVQTIGTEES 276 >UniRef50_UPI0000D54649 DNA-directed RNA polymerase beta subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54649 Length = 440 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 210/438 (47%), Positives = 284/438 (64%), Gaps = 27/438 (6%) Query: 147 SQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPA 206 SQLHRSPGVFFD D+GKTH+SGKVLYNARIIPYRGSWLDFEFD KDNLF RIDR++K+ + Sbjct: 3 SQLHRSPGVFFDHDEGKTHASGKVLYNARIIPYRGSWLDFEFDHKDNLFFRIDRKKKMIS 62 Query: 207 TIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDNKLQMEL 241 T IL+AL T+E+IL F+E F+ + N + L Sbjct: 63 TTILQALPSKASEKYLEECHQNKVDPDIYKVSGMTSEEILTYFYETFTFKKQKNGWVVNL 122 Query: 242 VPERLRGETASF--DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAK 299 + + + F + ++ K +++ + +++++ V E + G ++ Sbjct: 123 DLNKFKYKNLPFNLVDPLSKEIVAHKDVKLSLKLLKEIKDKKVSKFFFTEEDLYGFYLSN 182 Query: 300 DYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDR 359 D ++ G + A LS + +L++ + + N I +L D N R Sbjct: 183 DIVNYDNGLVYAEAGTLLSKEFFERLNELSIDQFSVVNANQATGNLGIINSLVADKNNSR 242 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 AL +I++++RPGEPPT EA+ LF+N+FFSEDRYDLS VGR+K N L ++ S I Sbjct: 243 EEALFDIFKILRPGEPPTLEASNYLFQNMFFSEDRYDLSEVGRVKLNSYLSLDKTNKSRI 302 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 LSK D++ V KKL D++ DDIDHLGNRR+RSVGE+ ENQ+R+GLVR+ERA++E++ Sbjct: 303 LSKSDVLAVAKKLFDMKTESAGKDDIDHLGNRRVRSVGELIENQYRIGLVRMERAIREKM 362 Query: 480 SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT 539 D++++MPQD++N+KPI +KEF G+SQLSQFMDQ NPLSEITHKRRISALGPGGLT Sbjct: 363 GTVDIESIMPQDLVNSKPIQTVLKEFTGTSQLSQFMDQTNPLSEITHKRRISALGPGGLT 422 Query: 540 RERAGFEVRDVHPTHYGR 557 RERAGFEVRDVH THYGR Sbjct: 423 RERAGFEVRDVHTTHYGR 440 >UniRef50_Q1L6V8 DNA-directed RNA polymerase (Fragment) n=1 Tax=Selaginella erythropus RepID=Q1L6V8_9TRAC Length = 593 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 107/762 (14%), Positives = 209/762 (27%), Gaps = 207/762 (27%) Query: 617 AQANSNLDE----EGHFVEDLVTCRSKGESSLFS---------------RDQVDYMD-VS 656 N + G ++ L R + ++ ++ + Sbjct: 2 VFVNGHWKGATRNPGMLLQQLRNLRRGMLIHPEVGFGDAPTASNRKACLQTEIAHVPSRT 61 Query: 657 TQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTA 716 ++++ G L+ L D R L+ + Sbjct: 62 EIRILTDGGRLLRPLLVVDEQRVLVF----------------MGKHIHLLRAMAPRERFN 105 Query: 717 VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEP 776 + G+V+ + A V E+ Sbjct: 106 YMLKSGLVELLGAQEESNAVVGMTRLEAESSR---------------------------- 137 Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 L P++ LG + + +P+ +N + + + ++ + Sbjct: 138 -TAFTHLEMHPASFLG-------LSASVIPFLDHNHSSRVTHQAQKH-GKQAIGVYACDN 188 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 T P V L LT Sbjct: 189 LSRMEPTAH---LYYPQKPLVHSWLAQHL-------------------------TCPXLT 220 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 + A+ + +DS + V + F Sbjct: 221 NGTNCVVAVASYGGFNQEDSLIVNQASVDRGLFRSTHF---------------------F 259 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL-ELGLTDEEKQNQLEQLA 1015 K S + + + S A L + G+ D + + LT + + Sbjct: 260 VKKASLDSKSSQHFGKSSDSASLDSDGLPYIGAKMTAGDVVIGRMALTKPXNKFVDKMSN 319 Query: 1016 EQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGV 1075 ++ + + G++ + V V L R Q GDK + HG KGV Sbjct: 320 L----------EQAWVDQVVCSMGEE---QDQRHVNVRLRESRCPQVGDKFSSMHGQKGV 366 Query: 1076 ISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQ 1135 + + ED+ + + G D++ + H + + + + +++ + Sbjct: 367 VGMMLSQEDLLFTQQGIVPDVI---------------INPHAFPSRQTLAQMLESLVGKT 411 Query: 1136 QEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEI 1195 G+ + F + ++ Sbjct: 412 A----------------------------------------AMGLCLGDTPFTHLRAEQL 431 Query: 1196 KELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARS-TGSYSLV 1254 + L GQ R+Y G TG T G + +LNHL DKM R G + Sbjct: 432 AQKLAKRGFQKWGQDRVYSGCTGRMTGAMATFGLTFYQRLNHLSRDKMKCRGGNGPVHPL 491 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKM------ 1304 T QP+ + + GG +FGEME L A+GA+ T+QE L + SD V Sbjct: 492 THQPVKDRRRQGGTKFGEMERDCLVAHGASATVQERLFLVSDKSLVHVCANCCRLASFNS 551 Query: 1305 -----YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELED 1341 + MP + +L E++++G+++ Z Sbjct: 552 QQQPGCLFCKRXQRPVAVEMPYACKLLRMELQAMGVDMRFZL 593 >UniRef50_B2X1Z2 DNA-directed RNA polymerase n=1 Tax=Oedogonium cardiacum RepID=B2X1Z2_OEDCA Length = 739 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 137/358 (38%), Positives = 193/358 (53%), Gaps = 43/358 (12%) Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD---D 1041 + K E + + Q ++L ++ D+ + + + D + Sbjct: 417 LKKFYRKNNNQELTERTINKTNIKLQFQKLRQKKDKKFYSINNDEAEQNVLPRKKDFSLN 476 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 L + VYLA KR+IQ GDK+AGRHGNKG++SKI PI+DMPY +G+ VD+VLNPL Sbjct: 477 LFNSKPFTIHVYLAEKRKIQVGDKIAGRHGNKGIVSKILPIQDMPYLADGSFVDLVLNPL 536 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 GVPSRMN+GQI E LG+A +G+ + + +G + + Sbjct: 537 GVPSRMNVGQIYECLLGLAGYYLGEYYRILPFDE--------------KIGEEASRSFVF 582 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 S + + L D G+ L+DGRTGE+F Sbjct: 583 SKLYEAGMKTGNY-------------------------WLFDPKNPGKTYLFDGRTGEKF 617 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 E+ V +GY Y+LKL HLVDDK+H+RSTG YS VTQQPL G+++ GGQR GEMEVWALE Y Sbjct: 618 EQQVMIGYAYILKLVHLVDDKIHSRSTGPYSAVTQQPLRGRSKQGGQRLGEMEVWALEGY 677 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 GAA+TL E+LT+KSDD GR ++ +I+ PESF VL+ E+++L +I + Sbjct: 678 GAAFTLLELLTIKSDDKIGRLTIWDSILRQKEIS-IKTPESFKVLVCELKALCFDIGI 734 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 85/274 (31%), Positives = 140/274 (51%), Gaps = 2/274 (0%) Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 M Y+L Y RSNQ+TC+ P ++ G V+ GD+LAD S+ GELA+GQN+ Sbjct: 1 MENTRYIPIEYHLENYHRSNQDTCLVHRPTINEGNWVQPGDILADCSSSKNGELAIGQNI 60 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA 860 +A+MPW GYN+ED++L+S+R+V ++ +T+IHI+ +T+ G E+IT ++ ++ Sbjct: 61 LIAYMPWEGYNYEDAMLISDRLVYDEIYTSIHIERYEISIEETQFGFEKITKELYDLPGE 120 Query: 861 ALSKLDESGIVYIGAEVTGGDILVGKVTPKGET-QLTPEEKLLRAIFGEKASD-VKDSSL 918 LS LD++GI +G+ + GDILVGKVTP + + + EKLL I G K + KD+SL Sbjct: 121 NLSHLDKNGITVLGSWLKEGDILVGKVTPTDKKVKYSNYEKLLYDILGTKKQNKGKDTSL 180 Query: 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAV 978 RVP G+ VI +++ + + I ++ ++ Sbjct: 181 RVPKGLEAKVITIEILSDNLSFSLTNFNLISLPNPLIYIQNRFLRFLNIQNKKNINSTHF 240 Query: 979 LVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE 1012 + + L R+ + + Sbjct: 241 AFDNKFKNQFLKISSRNWINFKQFHQQRVMGKFS 274 >UniRef50_A8PJ53 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8PJ53_COPC7 Length = 742 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 108/829 (13%), Positives = 224/829 (27%), Gaps = 193/829 (23%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ------DPEGQYGLEAAFRSVFPI 59 + D L+ QLDSF +F++ D L+ A + Sbjct: 26 YAPITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGQA 85 Query: 60 QSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 + E+++ ++ L +G+V + Sbjct: 86 GDMTRRYEIKFG---------------------------QIYLSRPTVTEADGSVVPVFP 118 Query: 120 QEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179 QE + +T + I +RV+V + +P Sbjct: 119 QE---ARLRNLTYSAPLYIEMRKRVLVGRE------------------------DPAVPG 151 Query: 180 RGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQM 239 +W + E + D +I K+P + + DL+ Sbjct: 152 DITW-EAEHEDTDGDAAKI-WIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSGG---- 205 Query: 240 ELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE----------------KDDVK 283 F I + KV + + R T + + K Sbjct: 206 ------------YFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVERGGK 253 Query: 284 LIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTN---- 339 I + + + + + +++ + + G + + Sbjct: 254 TISQFQVKMFHRNQERSLGNVMKATIPY---IKVDIPIWVVFRALGVISDRDILEHICYD 310 Query: 340 --DLDHGPYISETLRVDP-TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYD 396 D + + DR AL I T + + Sbjct: 311 MQDAQMLEMLKPCIDDGFVIQDREVALDFIGNR----GTTTGLPRDRRIRYAQEILQKEM 366 Query: 397 LSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSV 456 L + EGS ++ +L+ + E+DD DH G +R+ Sbjct: 367 LPHI-----------SMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLA 415 Query: 457 G-------------------------EMAENQFRVGLVRVERAVKERLSLGDLDTLMPQD 491 G E+ + + + + V+ Sbjct: 416 GLPSRQPVPYALPQAHQRCLSLLAEGELIQLHVGRIRIDLLQCVETH------KEFNLSL 469 Query: 492 MINAKPISAAVKEFFGSSQL-------------SQFMDQNNPLSEITHKRRISALGPGGL 538 + + I+ +K + SQ +++ S ++H RR + L Sbjct: 470 AVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT----PL 525 Query: 539 TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGV 598 RE + R +H TH+G VCP ETPEG GL+ +L++ A + G P + + Sbjct: 526 GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISV-GSYSAPVIEFLEEW 584 Query: 599 VTDEIHYLSAIEEGNYVIAQANSNLDEEGH----FVEDLVTCRSKGESSLFSRDQVDYMD 654 + + + N V+ + R K + S V + Sbjct: 585 GLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSV-VRDIR 642 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 ++ + + L + + ++ R ++ + Sbjct: 643 ERELRLYTDAGRVCRPLFIVENQQLVLQKKHVRW---LANSEND----------DGEEWK 689 Query: 715 TAVAKRGGVVQYVDASRIV---IKVNEDEMY---PGEAGIDIYNLTKYT 757 + G+V+ +DA I + +++ G++I Y Sbjct: 690 WENLIKSGIVELLDAEEEETVMICMTPEDLEVSRRQSEGMEIQTHEDYD 738 >UniRef50_Q9MTD3 DNA-directed RNA polymerase subunit beta n=10 Tax=Sarcocystidae RepID=RPOB_TOXGO Length = 1051 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 164/832 (19%), Positives = 318/832 (38%), Gaps = 45/832 (5%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR--GETASFDIEANGK 260 K+ L + Y I K + L+ L + K Sbjct: 62 KVNNINFLDNVQYINSLIKIFLPLKFQNLKTNKVFFKNLLIFELPKYNSYNYCYLNGLKK 121 Query: 261 VYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 +++ K + K I + +D ++ + + Sbjct: 122 IFISKYFTSNGIFFNKYLKRKYN-IYYAKLLLTNSNFFNIILDLKLKQIYLSIKNL-KFN 179 Query: 321 LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREA 380 + L G K + L + + + + D ++ I + + Sbjct: 180 FILFLYYLGIKNTDILKYSRYKNSKILKLLIFSALQTDLVNNKKIILKNL---------N 230 Query: 381 AESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKG 440 L Y + + K N + L D I ++ L+D+++ K Sbjct: 231 YLKSIFKLTILNKNYKNFIISKDKLNYNYG---DFSKNNLLIIDFIFILDLLLDLQSKKL 287 Query: 441 EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA 500 IDHL N+ I ++G ++ F+ L + + + L L + Sbjct: 288 CFKTIDHLDNKHINTIGNYFQHNFKFYLKKFISIIPNLIKLQKFSLLKVYN--------- 338 Query: 501 AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP 560 KE + L Q+++Q N SE+ HK +++ + + +R++ G++C Sbjct: 339 -FKELLILNPLIQYLEQINSFSELMHKYKLNNYN----SFSKGILNLREICLNQLGKLCL 393 Query: 561 IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQAN 620 I+T EG N GL+ S + + + + G ++ + + + +++ +++++ Y+I N Sbjct: 394 IDTTEGINCGLVVSFAKHIRIYKKGIIQVYFSSIFKNKTKEFLNFKTSLDQELYLIQFNN 453 Query: 621 SNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 NL + + + + +K + + + + S +LIPF++++D R L Sbjct: 454 INLRKIKYLMN-VRLVYNKNNFRIKFFSNKKSILLEFTDLFSFTENLIPFIKYNDPARCL 512 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 MGA MQ Q+VP L K V TG E+ + S T A + G+V + +I IK + Sbjct: 513 MGAKMQSQSVPLLNKKKSFVITGYEKEIITKSDTTIKALQEGIVLNASSLKIHIKDLFNR 572 Query: 741 MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM 800 +Y L+KY +SNQNT I+Q P V GE V +L E A+G N+ Sbjct: 573 E-------IVYYLSKYKKSNQNTIIHQKPLVWNGERVFTNQLLTQHQDIIDSEFAIGNNL 625 Query: 801 RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACV-SRDTKLGPEEITADIPNVGE 859 + + GY+FED+++VS+RV+ + F+++H+ + + E T +IP Sbjct: 626 LFYYGNFCGYDFEDAVIVSKRVLYQQLFSSLHMDIYEFNFCYNNENDIEFSTLEIPKQSY 685 Query: 860 AALSKLDESGIVYIGAEVTGGDILVGKVTP-KGETQLTPEEKLLRAIFGEKASDVKDSSL 918 LD GI+ G ++ G IL+ K+ K KL+ +IFG+ ++KD+SL Sbjct: 686 YIKKNLDSLGIIKEGEKILTGSILLTKIKVAKPTYTYKSIFKLIYSIFGKTIRNIKDNSL 745 Query: 919 RVPNGVSGTVIDVQVF-----TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFS 973 + G SG V +++F +R + + + + + + + G Sbjct: 746 YIQTGKSGRVSKIELFLVNISSRHKYKTYNNSYLKCRIFICKQRFLTVGDKLCGRYGNKG 805 Query: 974 RIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEF 1025 + + + + P LG+ QL + + Sbjct: 806 ILSYIAENADLPFLQNSFYPDIIVGALGIPSRMNLGQLFEALVGKISFSYNI 857 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 119/542 (21%), Positives = 203/542 (37%), Gaps = 58/542 (10%) Query: 812 FEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGP-EEITADIPNVGEAALSKLDESGI 870 +E I+ + I + + L E + + + + + Sbjct: 536 YEKEIITKSDTTIKALQEGIVLNASSLKIHIKDLFNREIVYYLSKYKKSNQNTIIHQKPL 595 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 V+ G V +L ++ LL D +D+ + V+ Sbjct: 596 VWNGERVFTNQLLTQHQDIID-SEFAIGNNLLFYYGNFCGYDFEDAVIVSK-----RVLY 649 Query: 931 VQVFTRDGVEKDK-----------RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL 979 Q+F+ ++ + +E + K + L I++ G ++L Sbjct: 650 QQLFSSLHMDIYEFNFCYNNENDIEFSTLEIPKQSYYIKKNLDSLGIIKEGEKILTGSIL 709 Query: 980 VAG-GVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038 + V + + + + L Q + + +L Sbjct: 710 LTKIKVAKPTYTYKSIFKLIYSIFGKTIRNIKDNSLYIQTGKSGRVSKIELFLVNISSRH 769 Query: 1039 GDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVL 1098 ++++ +R + GDK+ GR+GNKG++S I D+P+ +N DI++ Sbjct: 770 KYKTYNNSYLKCRIFICKQRFLTVGDKLCGRYGNKGILSYIAENADLPFLQNSFYPDIIV 829 Query: 1099 NPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 LG+PSRMN+GQ+ E +G + +I Y+ K Sbjct: 830 GALGIPSRMNLGQLFEALVGKISFSYNIRI-LPSFTTSSNLYFNYLKILIYNFLMFNNFK 888 Query: 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTG 1218 + L + G+ + DGRTG Sbjct: 889 KGFN-------------------------------------WLYNFNLPGKFIIRDGRTG 911 Query: 1219 EQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWAL 1278 + + V G KL HL+ DK+H R+TG Y+ + QQPL GK GGQRFGEME+WAL Sbjct: 912 VKLKSSVLCGVSRYSKLIHLIKDKLHFRTTGPYTEILQQPLKGKKNLGGQRFGEMEIWAL 971 Query: 1279 EAYGAAYTLQEMLTVKSDDVNGRTKMYKNIV-DGNHQMEPGMPESFNVLLKEIRSLGINI 1337 EA+GA+Y L+E+L KSDD R + + ++ + ESF V+LKE L +N+ Sbjct: 972 EAFGASYNLKEILNYKSDDCFARNNLKEYLLFRNTELQNSTITESFRVILKEFNGLILNL 1031 Query: 1338 EL 1339 EL Sbjct: 1032 EL 1033 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 51/436 (11%), Positives = 131/436 (30%), Gaps = 34/436 (7%) Query: 111 EGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKV 170 + + + + E+P +NG +++ +S+ S G+FF+ + + Sbjct: 89 NLKTNKVFFKNLLIFELPKYNSYNYCYLNGLKKIFISKYFTSNGIFFNKYLKRKY----N 144 Query: 171 LYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDL------- 223 +Y A+++ ++ + D K + K + L L IL Sbjct: 145 IYYAKLLLTNSNFFNIILDLKLKQIYLSIKNLKFNFILFLYYLGIKNTDILKYSRYKNSK 204 Query: 224 -----FFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLE 278 F + ++ +NK + L+ + N K ++ ++ + + Sbjct: 205 ILKLLIFSALQTDLVNNKKIILKNLNYLKSIFKLTILNKNYKNFIISKDKLNYNYGDFSK 264 Query: 279 KD----DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS-----G 329 + D I + + K + ID + I + L + Sbjct: 265 NNLLIIDFIFILDLLLDLQSKKLCFKTIDHLDNKHINTIGNYFQHNFKFYLKKFISIIPN 324 Query: 330 HKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLF 389 +++ + + + + +++++ E+ + + + Sbjct: 325 LIKLQKFSLLKVYNFKELLILNPLIQYLEQINSFSELMHKYKLNNYNSFSKGILNLREIC 384 Query: 390 FSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLG 449 ++ N L+ + I K + I K + Sbjct: 385 LNQLGKLCLIDTTEGINCGLVVSFAKHIRIYKK---GIIQVYFSSIFKNKTKE-----FL 436 Query: 450 NRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFG-S 508 N + E+ QF +R + + + + + + N K I + F + Sbjct: 437 NFKTSLDQELYLIQFNNINLRKIKYLMNVRLVYNKNNFRIKFFSNKKSILLEFTDLFSFT 496 Query: 509 SQLSQFMDQNNPLSEI 524 L F+ N+P + Sbjct: 497 ENLIPFIKYNDPARCL 512 >UniRef50_Q5YF54 DNA-directed RNA polymerase n=3 Tax=Infectious spleen and kidney necrosis virus RepID=Q5YF54_ISKNV Length = 1053 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 92/557 (16%), Positives = 164/557 (29%), Gaps = 118/557 (21%) Query: 798 QNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNV 857 + A +P+ + + ++ + L +SR + +P Sbjct: 602 TDAMSAVIPFYNHTQSPRNAYQSNMGKQAVG----LPCLNYMSRWDVTLDVLMYPQVPLS 657 Query: 858 GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSS 917 A+ L + + + A+ + +DS Sbjct: 658 RSKAMDALSFDTMPH-------------------------GACPIVAVLTFDGYNQEDSI 692 Query: 918 LRVPNGVS-GTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE-ELQILEAGLFSRI 975 + + V G + T EK + E E + K L Sbjct: 693 ILNRSSVQRGMFVSTTYKTLCECEKHVKRCEFERIMCVPVDKRRPGLVYDYLGDDGIFDP 752 Query: 976 RAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRK 1035 L R ++ G+ K + + E + K Sbjct: 753 ---------------ALARGMFVTAGVVVVGKMSFDQSRPEGVCCSLAVKPHEEGYFDDK 797 Query: 1036 ITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVD 1095 + K VK+ L R + GDK A KG + DMP+ +G D Sbjct: 798 LVFN---MADGCKCVKIKLRKIRIPEMGDKFASFTAQKGTCGMMYDQWDMPFTADGVVPD 854 Query: 1096 IVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADV 1155 +V + H + + Sbjct: 855 LV---------------INPHAFPSRMTV------------------------------- 868 Query: 1156 RQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDG 1215 + + L G F+ + + L+ + +Y G Sbjct: 869 -------HYLLQMCFELGAVAGGGKGYDATAFNSDGTD-LLKTLEELGYA---KQVMYCG 917 Query: 1216 RTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEV 1275 RTG +FE V + KL HLV +K+HAR+TG +T+QP+ G+++ GG + GEME Sbjct: 918 RTGRRFESLVFMAPCPYQKLKHLVANKVHARTTGPVDPLTRQPVAGRSRDGGIKIGEMEQ 977 Query: 1276 WALEAYGAAYTLQEMLTVKSDDVNGRTK-----------MYKNIVDGNHQMEPGMPESFN 1324 W ++GAA L E +T SD + ++ MP + Sbjct: 978 WCKISHGAAAALHESMTTMSDPYTVPVCSVCHVMTDSYKVCRHC-RSVSVQSYAMPYTSK 1036 Query: 1325 VLLKEIRSLGINIELED 1341 + +++ S+GI + D Sbjct: 1037 LFFQQLASIGIKTCIMD 1053 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 132/914 (14%), Positives = 245/914 (26%), Gaps = 134/914 (14%) Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 V+ G VI+ + G S Y+ V Sbjct: 41 VVEGEPPVIIHNHSVTFGDVAYSKPSPETPGHARAYDETYETTVSCKAYLTCLATGAKHV 100 Query: 197 R-IDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI 255 + I K+P + + L + + E + F + Sbjct: 101 QHIHNLAKMPVMVRAQPLC-------------------------QGIGECEKDPGGFFIV 135 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 + ++ + I + + + ++ + + + Sbjct: 136 KGKERIIIPHIHTAYNIPI--------TMHCTTKKTLVCEMRTHNETTGNNLLVKVRLMQ 187 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLR------VDPTNDRLSAL-VEIYR 368 +++ +S + + A+ + Sbjct: 188 GCIIEMSVPYIKSFLPAGAVFNALGVSEEDMLRYCNLAWQRTAQGGYVSEHIAMVQYMLM 247 Query: 369 MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 R P E + + + S +S + + Sbjct: 248 QYRECRPNPFE----YIAKIVAQP-----TVTTEYVRSVLAGVMFCHTSPEMSGQHLGYM 298 Query: 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL------G 482 + L++ G V D D+L +R+ + G + FR + VK + Sbjct: 299 VATLLNAHV-VGAVHDKDNLRWKRVDTSGALILFLFRNLFKQWVCTVKRVMEKSCVVGVP 357 Query: 483 DLDTLMPQDMINAKPISAAVKEFFGSSQL------------------SQFMDQNNPLSEI 524 DL I+ + F + SQ M N + I Sbjct: 358 DLQGKSGSVNAITNVITNVLHLAFATGNWLVRKNSGTSKNTYTPRGVSQLMCVQNYGARI 417 Query: 525 THKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEY 584 ++ RR++ + + +VR +H +H G +CP ETPEG +G + L++ A Sbjct: 418 SNLRRMT----HAVGFKGKNIKVRQLHNSHNGYICPYETPEGDRVGNVVQLALSATVTV- 472 Query: 585 GFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHF---VEDLVTCRSKGE 641 P IH L + Q N + G V D + C Sbjct: 473 --PVCP----------RNIHTLMMSALRLFADPQGNQPVLLNGEIVAWVRDRMLCGMAMM 520 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGAS-LIPFLEHDDANRALMGANMQRQ---AVPTLRADK 697 L+ V + V V + + M Q P + Sbjct: 521 HVLWDYPHVTVVFRHGYGVHCVQRRAAVSCDLSLHRGQYRMVCPSLVQGLLVRPFPSPTE 580 Query: 698 PLVGTGMERAVAVDSGVTAVA--KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK 755 +V RA +D V V+ + + ++ + M G+ L Sbjct: 581 RVVSMDSMRAEFMDLPGIVVLTDAMSAVIPFYNHTQSPRNAYQSNMGKQAVGLPC--LNY 638 Query: 756 YTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDS 815 +R + + P V L + + G VA + ++GYN EDS Sbjct: 639 MSRWDVTLDVLMYPQVPLSRSKAMD-------ALSFDTMPHGACPIVAVLTFDGYNQEDS 691 Query: 816 ILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEA---ALSKLDESGI-- 870 I+++ VQ F + + L + K E +P L + GI Sbjct: 692 IILNRSSVQRGMFVSTTYKTLCECEKHVKRCEFERIMCVPVDKRRPGLVYDYLGDDGIFD 751 Query: 871 --VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 + G VT G ++VGK++ F + + SL V G Sbjct: 752 PALARGMFVTAGVVVVGKMS-----------------FDQSRPEGVCCSLAVKPHEEGYF 794 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 D VF K + + + K S Q G+ + Sbjct: 795 DDKLVFNMADGCKCVKIKLRKIRIPEMGDKFASFTAQKGTCGMMYDQWDMPFTADGVVPD 854 Query: 989 LDKLPRDRWLELGL 1002 L P + + Sbjct: 855 LVINPHAFPSRMTV 868 Score = 83.8 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 26/241 (10%), Positives = 66/241 (27%), Gaps = 38/241 (15%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M +T + + L+ + ++ ++ P+ Sbjct: 1 MSQCHTXXMQAHLSY-----WTTPQRLVHHHIAHYEHLLKVHIP------QVVEGEPPVI 49 Query: 61 SYSGNSELQYVSYRLGEPV-FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 ++ + + +P + TY + K L Sbjct: 50 IHNHSVT--FGDVAYSKPSPETPGHARAYDETYETTVSCKAYLT-------CLATGAKHV 100 Query: 120 QEVY-MGEIPLMT---------------DNGTFVINGTERVIVSQLHRSPGVFFDSDKGK 163 Q ++ + ++P+M G F++ G ER+I+ +H + + Sbjct: 101 QHIHNLAKMPVMVRAQPLCQGIGECEKDPGGFFIVKGKERIIIPHIHTAYNIPITMHCTT 160 Query: 164 THSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILRALNYTTEQILD 222 + + + + + + + LPA + AL + E +L Sbjct: 161 KKTLVCEMRTHNETTGNNLLVKVRLMQGCIIEMSVPYIKSFLPAGAVFNALGVSEEDMLR 220 Query: 223 L 223 Sbjct: 221 Y 221 >UniRef50_Q4ZJA8 DNA-directed RNA polymerase n=3 Tax=Lymphocystivirus RepID=Q4ZJA8_FLDV Length = 1018 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 118/898 (13%), Positives = 254/898 (28%), Gaps = 128/898 (14%) Query: 144 VIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRK 203 V ++ ++ + K K +I P D + N + + + Sbjct: 25 VARDKIIQTTNFVIEF---KNIQYNKP----KITPLEAKQKDLTYAISINYEIDFNGKST 77 Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 + L + + + + + FE+ F ++ +V + Sbjct: 78 ILEIFSLPLMLRSKLCLTNNVAHQTTFEL------------CPNDPGGYFIVKGKERVLI 125 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 R + + E + + D ++ + Sbjct: 126 PHIRPRYNVPMVKYEDGFYLCEFRSASETGSSTLIQARTDGKIVLEFSLPYIKQFVPAGT 185 Query: 324 KLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAES 383 G E L + + + +Y + T Sbjct: 186 VFKTLGISFEEAFLLCGLGQKN---KHTLNCKSGYYEALSTILYGHYTGNKTVT------ 236 Query: 384 LFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVD 443 + + + + + + + S + ++ +L + G+ + Sbjct: 237 --DYVPVDVKCDNKESYVESLLKKEIFNHLEDHSPFNVACHLGYMINRLAAVTAGEAALT 294 Query: 444 DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMI-NAKPISAAV 502 D D L +R+ + G + E F+ + R +K L + L P +++ N I+ + Sbjct: 295 DKDDLAYKRVDTSGTLIEFLFKGLFKQYVRLIKNSLEI--LKNPDPINIVKNVNVITNGL 352 Query: 503 KEFFGSSQL---------------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 F + SQ + +N S ++H RR+ + + F++ Sbjct: 353 NLCFATGNWSVKKTGPPSYMRVGVSQVLCNHNYGSRLSHLRRL----MHAVGFKGKNFKI 408 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R +H +HYG +CP ETPEG +G++ + ++ ++ G+ ++I L Sbjct: 409 RRLHASHYGFICPYETPEGERVGVVLNTALSTAFSQ-------------GIPKNQIKPLM 455 Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASL 667 Y+ + + G V G + V ++V Sbjct: 456 ----EPYIKNSGSFKVILNGEIV---------GYVDDPDQTIKFLKSVLPEEVSVFCYRF 502 Query: 668 IPFLEHDDANRALMGANMQRQAVPTLRADKPLVG----TGMERAVAVDSGVTAVAKRGGV 723 P + ++ R P L K + + + + T V Sbjct: 503 TP-----KIKECHVFSDKGRFLRPVLVESKIIRVCAQEIHHIKYKELPAYSTMTDVMASV 557 Query: 724 VQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVL 783 + + + + + M GI R + P +L + Sbjct: 558 IPFYNHAPSPRIAYQSNMGKQAVGITTLT-GGRDRYDPTFYSLDYPQKALARTICYDRY- 615 Query: 784 ADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL-ACVSRD 842 + G VA +GYN EDS+++++ + F + Sbjct: 616 ------KFDIMCHGAVPIVAVSTMDGYNQEDSVVLNKSSIDRGLFNITCYKTFVEIEKYK 669 Query: 843 TKLGPEEITADIPNVGEAALSK--LDESGI--VYIGA-------------EVTGGDILVG 885 +K E I ++ L L ++G+ +G G +LVG Sbjct: 670 SKHDSELIAHPDFSIRNRDLDYSLLGKTGVLDPKLGKKNKKYRCPLCDALWFPAGTVLVG 729 Query: 886 KVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA 945 KV +KL+ + +D SL V G + ++ + + Sbjct: 730 KVA----------KKLIDGVIVY-----RDVSLAVKADEEGYLDELLDHYTIETGRIIKV 774 Query: 946 LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLT 1003 + K S Q G+ R + L P + + Sbjct: 775 KLRSSKIPEIGDKFASFTAQKGTCGMIYRQEDMPFTAEGVVPDLIINPHAFPSRMTIN 832 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 96/655 (14%), Positives = 190/655 (29%), Gaps = 106/655 (16%) Query: 703 GMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTK-----YT 757 + +SG V G +V YVD IK + + P E + Y T + Sbjct: 453 PLMEPYIKNSGSFKVILNGEIVGYVDDPDQTIKFLKSVL-PEEVSVFCYRFTPKIKECHV 511 Query: 758 RSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSIL 817 S++ + + S V ++ +L + ++ + +P+ + I Sbjct: 512 FSDKGRFLRPVLVESKIIRVCAQEIHHIKY-KELPAYSTMTDVMASVIPFYNHAPSPRIA 570 Query: 818 VSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEV 877 + ++ T R + Sbjct: 571 YQSNMGKQAVGIT---TLTGGRDRYDPTFYSLDYPQKALARTICYDRYKF---------- 617 Query: 878 TGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 DI+ P + A+ + +DS + + + + + T Sbjct: 618 ---DIMCHGAVP------------IVAVSTMDGYNQEDSVVLNKSSIDRGLFN---ITCY 659 Query: 938 GVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRW 997 + + + A D S + L+ L + VL + K + P Sbjct: 660 KTFVEIEKYKSKHDSELIAHPDFSIRNRDLDYSLLGKTG-VLDPKLGKKNKKYRCPLCDA 718 Query: 998 LELGLTDEEKQNQLEQLAEQYDELKHE-FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 L ++L + + K + + D +I+KV L Sbjct: 719 LWFPAGTVLVGKVAKKLIDGVIVYRDVSLAVKADEEGYLDELLDHYTIETGRIIKVKLRS 778 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 + +I Sbjct: 779 SKI----------------------------------PEI-------------------- 784 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 A K + +QE + ++ ++ Sbjct: 785 GDKFASFTAQKGTCGMIYRQEDMPFTAEGVVPDLIINPHAFPSRMTINYILQMCYGLAAC 844 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLN 1236 G F E + L L + + +Y G TG++F + +G +L Sbjct: 845 YTGKIYDATPFKRYNLTEELKELALELKLETWETTMYCGLTGKKFSSKIFIGPCDYQRLR 904 Query: 1237 HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296 HLV +K+H+R +G +T QP+ G++++GG + GEME W ++GA+ L+E L SD Sbjct: 905 HLVTNKIHSRISGPIDNLTHQPVAGRSRYGGIKVGEMEQWCKLSHGASAALKESLFDMSD 964 Query: 1297 DVNGRTKMYK--------NIVDGNHQMEPGM---PESFNVLLKEIRSLGINIELE 1340 + E M P + +L +E+ ++GI+++ E Sbjct: 965 KYTIPVCKTCKTISDDFEYCRKCDDI-EIEMKNCPYTSKLLFQELMAIGIHVQFE 1018 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 68/204 (33%), Gaps = 23/204 (11%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQ 83 + L + ++S+ +F+ D + ++ N +++ + + +P Sbjct: 2 LKRLTAHHIESYDRFLFFDIPAVVARDKIIQTT--------NFVIEFKNIQYNKPKITPL 53 Query: 84 ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE----------IPLMTDN 133 E + + +TY+ + ++ ++ + ++ + P Sbjct: 54 EAKQKDLTYAISINYEIDFNGKSTILEIFSLPLMLRSKLCLTNNVAHQTTFELCPN-DPG 112 Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN 193 G F++ G ERV++ + V + + + + + D K Sbjct: 113 GYFIVKGKERVLIPHIRPRYNVPMVKYED---GFYLCEFRSASETGSSTLIQARTDGKIV 169 Query: 194 LFVRIDRRRKL-PATIILRALNYT 216 L + ++ PA + + L + Sbjct: 170 LEFSLPYIKQFVPAGTVFKTLGIS 193 >UniRef50_D0EVW5 RNA polymerase beta subunit n=1 Tax=Bryopsis hypnoides RepID=D0EVW5_9CHLO Length = 1310 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 127/521 (24%), Positives = 218/521 (41%), Gaps = 38/521 (7%) Query: 96 LRVKLRLVIYEREAPEGTVK-DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPG 154 + K+RL+ + K + ++ Y E L+ +I + + S Sbjct: 1 MYKKIRLIYIKNGNLLNLWKHFLFSKKKYSTEYFLLNCRIKKIIEPAIKYKSNNWKLSYV 60 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALN 214 ++ K S V + + + K + D R + + Sbjct: 61 LYILYFFQKKESKKFVNFFSES--------RLDNLKKSSQRAECDENRLMS--------S 104 Query: 215 YTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 QI F + + + L L + F I +V V + R + Sbjct: 105 LRNHQIFFSFLLIHNKKKKIRFQWVFLGNLPLMTKRGHFIINGAPRVIVNQIIRAAGVYY 164 Query: 275 RQLEKD------DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQS 328 +Q V+ I+ + V + + ++ + + L Sbjct: 165 QQQVNKVIKKGQKQIYRTFYVDIISYRGVWLRFELDKKRQIWVCMKKTPKMPIFVFLKFM 224 Query: 329 GHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENL 388 G + L + T L + + + + + Sbjct: 225 GFSKKNILSNVRNIQPNFFKNTKMHTRNF-----LFYLTQNFQLEKTFN----HTFTYRK 275 Query: 389 FFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHL 448 F + YDL +GR + N L IL+ D + + +L+D+ N + VDDID+L Sbjct: 276 FLNPQIYDLGIMGRKRLNSKLGL--RTKKTILTPSDFLKITYRLLDLTNHQDVVDDIDNL 333 Query: 449 GNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 GNRRIR+VGE+ + QF R+ + ++E++ + + +P+++ ++EFFGS Sbjct: 334 GNRRIRTVGELLKIQFFQATFRLNKILEEKIKKTESMD----SIFTTRPMNSVLREFFGS 389 Query: 509 SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPN 568 QLSQF+DQ NPLSE+THKRRIS LGP G+ RE AG ++R +H T++GR+CPIETPEG N Sbjct: 390 CQLSQFLDQTNPLSELTHKRRISCLGPNGIQRETAGMDIRGIHSTYFGRICPIETPEGQN 449 Query: 569 IGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAI 609 GL+NSL++++ N GFLE+ + K+ G + ++ L Sbjct: 450 AGLVNSLTIFSTKNADGFLESIFYKIYKGQIQKQLEPLCNK 490 >UniRef50_D2RIB2 RNA polymerase beta subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RIB2_ARCPR Length = 511 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 105/602 (17%), Positives = 208/602 (34%), Gaps = 119/602 (19%) Query: 20 QVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPV 79 L+ Q+DS+ +F+++ GL+ I+ N Sbjct: 10 AYFTHDRLVRHQIDSYNRFLDE------GLQRVIDEQRIIELDIPN-------------- 49 Query: 80 FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVIN 139 TY +K ++G+ P++ + + Sbjct: 50 -----------TY------------------------VKLGRAWVGK-PIVKEA-----D 68 Query: 140 GTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRID 199 G R+++ R + + + Y + G L++E Sbjct: 69 GIRRLLLPAEARLRNLTYAAPI----------YVEAQVVDEGKELEWET----------V 108 Query: 200 RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKL--QMELVPERLRGETASFDIEA 257 LP + + N + I + + + ++ L E F I Sbjct: 109 EIGMLPVMVKSKICNLHPDNIDEALKAFRRTDNIPDDYEKKLCLAGEDPLDPGGYFIING 168 Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA----- 312 + V + + + E+ + EV + + E T I Sbjct: 169 TERALVTLEDLAPNKILLEKEEKYGEEFEVAKCFSQKAGYRALVVVERTRGNILEVTFPQ 228 Query: 313 -ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMR 371 + L+ L K I + + + + ++ E L V + A+ I R + Sbjct: 229 LPKPIQFVVLMRALGVESDKEIVEMVSTNPEIMKFMLENLEVAEVETQEEAIDYIGRRVA 288 Query: 372 PGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK 431 PG ++ + + D++ L +G + + + + Sbjct: 289 PG-----QSRDYRIQRANQVLDQHFLPHLG-----------TEPEARRAKAFFLARMAEM 332 Query: 432 LIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGD--LDTLMP 489 + ++ G DD DH N+R++ G++ E FRV L+R+ + VK +L + Sbjct: 333 VFELHLGLRREDDKDHYANKRLKLAGDLIEEIFRVALLRLIKDVKYQLERAKARGRPMKM 392 Query: 490 QDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPGGLTRER 542 + A ++ + + SQ +D++N +S ++H RR+ + L+R + Sbjct: 393 TTAVRADVLTDRIMHPMATGNWVGGRTGVSQLIDRHNYMSILSHLRRVVS----PLSRSQ 448 Query: 543 AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDE 602 FE RD+HPT +GR+CP ETPEGPN GL+ + + YA+ + G E +K + + Sbjct: 449 PHFEARDLHPTQWGRLCPNETPEGPNCGLVKNFAQYAEVSV-GCDEENVKKTLFSLGVEP 507 Query: 603 IH 604 I Sbjct: 508 IR 509 >UniRef50_P15352 DNA-directed RNA polymerase subunit B'' n=25 Tax=Euryarchaeota RepID=RPOB2_HALSA Length = 523 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 91/559 (16%), Positives = 207/559 (37%), Gaps = 70/559 (12%) Query: 69 QYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ---EVYMG 125 + + + +Y+A L ++ V+ E+E E + D +++ V +G Sbjct: 8 ELSESYFSKERLAEHHFR----SYNAFLEHGMQDVVTEKERIETDIGDKEDEEPVWVELG 63 Query: 126 EIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 ++ +T +G+E ++ Q R + Y+A + Sbjct: 64 DVRAVTPRVR-EADGSEELLYPQEARLRNI---------------TYSAPVFMEMSIVRG 107 Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 E + + L + ++P + N + +L Sbjct: 108 GEEEEERVLDTTETKVGRMPIMVGSDKCNISGFSDEELIEIGEDP--------------- 152 Query: 246 LRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDES 305 F I + +V + + + + + I+V + + + E Sbjct: 153 -ADPGGYFIINGSERVLMTSEDLAPNKILAEYDSKYGDEIQVAKTFSQRRGYRALVLVER 211 Query: 306 TGELICA---ANMELSLDLLAKLSQSGHKRIETLF---TNDLDHGPYISETLRVDPTNDR 359 E + ++ S+ + + G + E + + D + ++ E L + Sbjct: 212 NREGLLEVSFPSVSGSISFVTLVRALGLESDEEIVHRVSEDPEIVKFMLENLEEADVQTQ 271 Query: 360 LSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGI 419 A+ ++ + + G+ + + + DRY L + E E + I Sbjct: 272 EEAIEDLGQRVASGQGKNYQ-----LKRANYVIDRYLLPHLHEDGV-------EEEETRI 319 Query: 420 LSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479 + + + ++ G+ E DD DH N+R++ G++ ++ FR L ++ R VK +L Sbjct: 320 NKAYYLCRMAEACFELALGRREADDKDHYANKRLKVSGDLMKDLFRTALNKLARDVKYQL 379 Query: 480 SLGDLDT--LMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNNPLSEITHKRRI 530 ++ L ++ + ++ ++ + SQ +D+ + + ++H RR+ Sbjct: 380 ERANMRNRELTVNTVVRSDVLTERLEHPIATGNWVGGRSGVSQLVDRTDFMGVLSHLRRL 439 Query: 531 SALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETP 590 L+R + FE RD+H T +GR+CP ETPEGPN GL+ + + + ++ E Sbjct: 440 ----RSPLSRSQPHFEARDLHATQWGRICPSETPEGPNCGLVKNFAQAMELSQDVDDERD 495 Query: 591 YRKVTDGVVTDEIHYLSAI 609 ++ + + I +S Sbjct: 496 LKQELSSMGVEGIPGISME 514 Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 94/304 (30%), Gaps = 59/304 (19%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSE--- 67 L S+ F+E G++ I++ G+ E Sbjct: 3 QEDKRELSESYFSKERLAEHHFRSYNAFLEH------GMQDVVTEKERIETDIGDKEDEE 56 Query: 68 ---LQYVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKL-------------- 100 ++ R P QE ++R +TYSAP+ +++ Sbjct: 57 PVWVELGDVRAVTPRVREADGSEELLYPQEARLRNITYSAPVFMEMSIVRGGEEEEERVL 116 Query: 101 --------RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRS 152 R+ I E+ + +GE P G F+ING+ERV+++ + Sbjct: 117 DTTETKVGRMPIMVGSDKCNISGFSDEELIEIGEDPA-DPGGYFIINGSERVLMTSEDLA 175 Query: 153 PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPATIILR 211 P K +V + + E + + L V + ++R Sbjct: 176 PNKILAEYDSKYGDEIQVAKTFSQRRGYRALVLVERNREGLLEVSFPSVSGSISFVTLVR 235 Query: 212 ALNYTTEQILD------------LFFEKVIFEIRDNKLQMELV-PERLRGETASFDIEAN 258 AL +++ + + +++ + +E + G+ ++ ++ Sbjct: 236 ALGLESDEEIVHRVSEDPEIVKFMLENLEEADVQTQEEAIEDLGQRVASGQGKNYQLKRA 295 Query: 259 GKVY 262 V Sbjct: 296 NYVI 299 >UniRef50_A9RIU1 DNA-directed RNA polymerase n=8 Tax=Physcomitrella patens subsp. patens RepID=A9RIU1_PHYPA Length = 472 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 104/573 (18%), Positives = 182/573 (31%), Gaps = 124/573 (21%) Query: 777 VERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQEL 836 + + PS + + P+ +N I+ + ++ +HI Sbjct: 13 CNQHTHIEIHPSFMFE-------LSASMTPFVNFNQSSRIVFQSAMSKQAMPLALHIMTN 65 Query: 837 ACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLT 896 A P T ++ Sbjct: 66 MI-----SDSKILTYAQKPICTT----------------------------TISNTIKVY 92 Query: 897 PEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 ++ AI + +DS L + + + F+ E IE + + Sbjct: 93 NGVNVVIAILSYFGYNQEDSLLFNKSSIDKGL-----FSSIEYE---VVEIIENKFMNEI 144 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAE 1016 + + + + + + G A KL + + +E + Sbjct: 145 LVYVPDGDILRDNDGIILVGQQVKDGDTIAAKLVITEKKQSIEKIV-------------- 190 Query: 1017 QYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVI 1076 K R + KIV+V + + R G K RH KG+I Sbjct: 191 ----------LKSFVSRWVDKVTKHTSVEGNKIVRVRILLYRFPIVGHKFTSRHSQKGII 240 Query: 1077 SKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQ 1136 I ED+ + ++ D+++NP +PSRM +G +LE + Sbjct: 241 GAILSQEDLSFTKDEIAPDLIINPHVIPSRMTMGHLLEMVMYKIYVLD------------ 288 Query: 1137 EVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIK 1196 S + + ++ R+ I VF+ A + Sbjct: 289 -------------------------SNNARDPMLSSKPKSRESSCIDATVFNRAHRSF-- 321 Query: 1197 ELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 D+ + ++Y G T E V G Y L H DK H+ S G +T+ Sbjct: 322 ----EADIAKLCKEKMYCGATRLPIEAIVATGICYYHVLRHQARDKAHSISKGVIQSLTK 377 Query: 1257 QPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD--------DVNGRTKMYKNI 1308 QP+ G+++ GG RFGEME L A+G A L E L SD D + +I Sbjct: 378 QPVEGRSRKGGLRFGEMEKDYLIAHGVASMLFEKLKNTSDLYEIWIYHDCSMICSSSPSI 437 Query: 1309 -VDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 +G + E +P SF +L +E+ I + L+ Sbjct: 438 NCNGRNTKEHRLPYSFKLLAQELSIANIRVGLK 470 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 46/339 (13%), Positives = 98/339 (28%), Gaps = 46/339 (13%) Query: 696 DKPLVGTGMERAVAVDSG-----VTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 + + T + + + +V+ ++ V + M + + Sbjct: 1 MQCFIATTHDSICNQHTHIEIHPSFMFELSASMTPFVNFNQSSRIVFQSAMSKQAMPLAL 60 Query: 751 YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGY 810 + +T ++ Q P + ++ ++ G N+ +A + + GY Sbjct: 61 HIMTNMISDSKILTYAQKP-------------ICTTTISNTIKVYNGVNVVIAILSYFGY 107 Query: 811 NFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGI 870 N EDS+L ++ + + F++I + + + D + D GI Sbjct: 108 NQEDSLLFNKSSIDKGLFSSIEYEVVEIIENKFMNEILVYVPDGDILR-------DNDGI 160 Query: 871 VYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVID 930 + +G +V GD + K+ + Q + + + + VS V Sbjct: 161 ILVGQQVKDGDTIAAKLVITEKKQSIEK-------------------IVLKSFVSRWVDK 201 Query: 931 VQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD 990 V T K R + K S Q G + A L Sbjct: 202 VTKHTSVEGNKIVRVRILLYRFPIVGHKFTSRHSQKGIIGAILSQEDLSFTKDEIAPDLI 261 Query: 991 KLPRDRWLELGLT--DEEKQNQLEQLAEQYDELKHEFEK 1027 P + + E ++ L K Sbjct: 262 INPHVIPSRMTMGHLLEMVMYKIYVLDSNNARDPMLSSK 300 >UniRef50_D2EG08 RNA polymerase Rpb2 domain 6 n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG08_9EURY Length = 600 Score = 272 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 105/748 (14%), Positives = 206/748 (27%), Gaps = 176/748 (23%) Query: 614 YVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEH 673 +V + D+ ++DL+ R +G+ + D + + S L+ L Sbjct: 5 FVNGVLSGATDDPNRLIKDLIEDRREGKIPKEV-NVRFRKDTDSVMINSDSGRLLRALIV 63 Query: 674 DDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV 733 + L+ + + G ++Y+DA Sbjct: 64 VKNGKPLVTKEDVQLL-------------------SEGHVTWQDLIDKGKIEYLDADEEE 104 Query: 734 IKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGE 793 + LT+ + +T + P G Sbjct: 105 LAYT--------------ALTEEELTPSHTHLEITPLSVFGTQ----------------- 133 Query: 794 LALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITAD 853 + +P+ ++ + + + VQ+ ++ R I Sbjct: 134 --------ASLLPFINHSNAHRNVTAVKSVQQGVG--VYSTNYLI--RHDNESMIAIDQQ 181 Query: 854 IPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDV 913 P V + + ++ A+ ++ Sbjct: 182 FPIVKTEMYEN-------------------------ENFKSHLSGQNIVVAVLSYLGYNM 216 Query: 914 KDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL----EIEEMQLKQAKKDLSEELQILEA 969 D+ + + V ++ F VE K I A + + L+ Sbjct: 217 DDAIIINKSSVERGLLRAMFFRPYKVEDLKYVGGQSDLITIPDKDVAGYRSEDSYKYLDE 276 Query: 970 GLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKL 1029 + I + + G V ++ PR ++ + + E + Sbjct: 277 DAIAAINSHVNDGDVLIGRISP-PRFVSSIDKFRLGVQKQVESSIECRTGESGIVENVFV 335 Query: 1030 EAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDE 1089 K V + + R ++ GD Sbjct: 336 -----------TSTSEGNKYVSLKIRQDRPVEIGD------------------------- 359 Query: 1090 NGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAY 1149 + P G K + QE Sbjct: 360 -------IFGPRS----------------------GQKGVVGMLLNQEDMPFTYSGIVPD 390 Query: 1150 DLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQ 1209 + + +S E++ G + F G E +++ L +G Sbjct: 391 LIFSPYSIPSRMSMSYLLELIGGKVGALGGRHVDGTSFTGETEESLRQELMKYGFRENGV 450 Query: 1210 IRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQR 1269 +Y+G TGE+ + + VG M ++L H V+ K+ R+ G L+ +QP GK++ GG R Sbjct: 451 ETMYNGITGEEMKVRIFVGDMTYIRLKHFVEYKIQWRARGPIQLLNRQPTEGKSKRGGLR 510 Query: 1270 FGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQME------------- 1316 GEME AYG A L+E SD V +V + + Sbjct: 511 LGEMEKDCFVAYGTALALKERF--DSDKVTIPVCSKCGMVAVYNVKKKTGYCPIDGEDAQ 568 Query: 1317 ---PGMPESFNVLLKEIRSLGINIELED 1341 + SF +LL E++S+GI ++ Sbjct: 569 IKLIEVSASFKILLDELKSVGIYPKMVL 596 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 71/498 (14%), Positives = 149/498 (29%), Gaps = 73/498 (14%) Query: 617 AQANSNL----DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLE 672 N L D+ ++DL+ R +G+ + D + + S L+ L Sbjct: 4 VFVNGVLSGATDDPNRLIKDLIEDRREGKIPKEV-NVRFRKDTDSVMINSDSGRLLRALI 62 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT----------------- 715 + L+ + + L+ G + D Sbjct: 63 VVKNGKPLVTKEDVQLLSEGHVTWQDLIDKGKIEYLDADEEELAYTALTEEELTPSHTHL 122 Query: 716 ------AVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN--- 766 + ++ +++ S V + + G+ +Y+ R + + I Sbjct: 123 EITPLSVFGTQASLLPFINHSNAHRNVT--AVKSVQQGVGVYSTNYLIRHDNESMIAIDQ 180 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 Q P V GQN+ VA + + GYN +D+I++++ V+ Sbjct: 181 QFPIVKTEMYENEN----------FKSHLSGQNIVVAVLSYLGYNMDDAIIINKSSVERG 230 Query: 827 RFTTIHIQELACVSRDTKLGP-EEITADIPNV----GEAALSKLDESGIVYIGAEVTGGD 881 + + G + IT +V E + LDE I I + V GD Sbjct: 231 LLRAMFFRPYKVEDLKYVGGQSDLITIPDKDVAGYRSEDSYKYLDEDAIAAINSHVNDGD 290 Query: 882 ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEK 941 +L+G+++P + +L +SS+ G SG V +V V + K Sbjct: 291 VLIGRISPPRFVSSIDKFRLGVQ-------KQVESSIECRTGESGIVENVFVTSTSEGNK 343 Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 ++ ++ Q G+ + L P + Sbjct: 344 YVSLKIRQDRPVEIGDIFGPRSGQKGVVGMLLNQEDMPFTYSGIVPDLIFSPYSIPSRMS 403 Query: 1002 LT------------DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI 1049 ++ + + +E + K + + + G Sbjct: 404 MSYLLELIGGKVGALGGRHVDGTSFTGETEESLRQELMKYGFRENGVETMYNGITGEEMK 463 Query: 1050 VKV------YLAVKRRIQ 1061 V++ Y+ +K ++ Sbjct: 464 VRIFVGDMTYIRLKHFVE 481 >UniRef50_Q1JNX7 DNA-directed RNA polymerase beta chain n=551 Tax=cellular organisms RepID=Q1JNX7_STRPC Length = 249 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 121/258 (46%), Positives = 152/258 (58%), Gaps = 54/258 (20%) Query: 1085 MPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREF 1144 MPY +GTPVDI+LNPLGVPS IG + Sbjct: 1 MPYLPDGTPVDIMLNPLGVPS---------------RMNIGQVM---------------- 29 Query: 1145 IQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL 1204 E+ G+ IATPVFDGA ++ + ++ + Sbjct: 30 -----------------------ELHLGMAARNLGIHIATPVFDGASSEDLWDTVREAGM 66 Query: 1205 PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 + + LYDGRTGE F+ V+VG MYM+KL+H+VDDK+HARS G YSLVTQQPLGGKAQ Sbjct: 67 DSDAKTVLYDGRTGEPFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQ 126 Query: 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFN 1324 FGGQRFGEMEVWALEAYGA+ LQE+LT KSDDV GR K Y+ I G +PG+PESF Sbjct: 127 FGGQRFGEMEVWALEAYGASNVLQEILTYKSDDVTGRLKAYEAITKGKPIPKPGVPESFR 186 Query: 1325 VLLKEIRSLGINIELEDE 1342 VL+KE++SLG+++ + DE Sbjct: 187 VLVKELQSLGLDMRVLDE 204 >UniRef50_A6YGD9 DNA-directed RNA polymerase subunit beta N-terminal section n=1 Tax=Leptosira terrestris RepID=RPOB1_LEPTE Length = 1142 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 157/649 (24%), Positives = 279/649 (42%), Gaps = 29/649 (4%) Query: 107 REAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHR-SPGVFFDSDKGKTH 165 + K I E+Y+ + +++ + + L V K++ Sbjct: 507 KNKTGLYHKFIPTPEIYI------VEPNLNLVDMKSQQKFNLLKMDLYKVGLAESFLKSN 560 Query: 166 SSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDL-F 224 + +Y + ++ D +I ++ K + + L +N +L Sbjct: 561 LNNLNIYLQMCLRKPNTYFR---DISKICSAQITQQLKQKSFLKLLLINPRLISQNNLLV 617 Query: 225 FEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKL 284 + + ++ + ++ P + +F+I + + Sbjct: 618 LNRAVNFLKKIQFNLKDSPNL--NDYQNFEINKLKAHIFKCQIKTQNNLTCCKYIYIKTK 675 Query: 285 IEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRI---ETLFTNDL 341 I K ++ L+ + +L L + L + L N Sbjct: 676 FNYINLPIKQFFFTKRFLITEQKLLLGGKFINSNLALTSLLKLHKFSEVVSNSFLIYNAN 735 Query: 342 DHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG 401 + P + + + ++ ++ R L + + Sbjct: 736 NPNPNPTSIMSMIRPVNKSEIYRQLNRRFVRSRLQLNVLKSELTNSHSQLIKANNDPIDR 795 Query: 402 RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDID---HLGNRRIRSVGE 458 + + L ++ + + K I + + + D + L +I + Sbjct: 796 ELSI-QILKQDVQKSNPFNKKG--IYNQRFINKKFLDTSQFIDQELLHFLKTHKIFLDRQ 852 Query: 459 MAENQFRVGLVRVERAVKERL-SLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQ 517 + + + +++ ++L + + Q++I I+ A++E FG + LSQFMDQ Sbjct: 853 LTSLKTKQQNEKLKFIKWKKLRNFKNALKNPIQNLITTNAINGALQELFGLNPLSQFMDQ 912 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 NPLSEITHKRRIS++GPGG+ R+ A +VR +HPTHYGR+CPIETPEG N GL+NS ++ Sbjct: 913 INPLSEITHKRRISSMGPGGVNRDNASMDVRSIHPTHYGRICPIETPEGHNAGLVNSPTI 972 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV------E 631 YA+ N YGFLETP+ KV G + + YL+A +E + ++ + + E E Sbjct: 973 YARINNYGFLETPFFKVNSGQIQAKAFYLNAQKEQKFKVSPPDLSCSELQFLPLGPTKIE 1032 Query: 632 DLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVP 691 V R + + Q++++ +S Q++SV SLIPFLEHDDANRALMG+NMQRQAVP Sbjct: 1033 SEVPMRKDFKFQRMAATQIEFIGISPLQMISVATSLIPFLEHDDANRALMGSNMQRQAVP 1092 Query: 692 TLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 L A++P+VGTG+E V DS K+ GV+ YV +++++ Sbjct: 1093 LLIAERPVVGTGLEGRVIADSSYIMQTKQSGVISYVSNEQVIVQTFHLN 1141 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 27/223 (12%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VS 72 F + + L + L+ IQ SF + + GL+ + I++ + N +L + + Sbjct: 3 FSVKNKNLLIQNLVEIQQQSFNELL------CVGLKRQLLQLNFIENKTRNIKLIFHAKN 56 Query: 73 YRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTD 132 Y+ P +E ++ T+++ L + + I V +G +P MT Sbjct: 57 YKFILPEITPKEAVLKSKTFASALFIPVEY---------RAKNSIGLYWVLLGHLPFMTK 107 Query: 133 NGTFVINGTERVIVSQLHRSPGVFF----------DSDKGKTHSSGKVLYNARIIPYRGS 182 G F+ING RV+++Q+ RSPG+++ + S ++ + IIP RG+ Sbjct: 108 RGHFIINGVPRVVLNQMVRSPGLYYKTTANPQNVSNQVSINDSSHTSPVFYSDIIPNRGT 167 Query: 183 WLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFF 225 WL E D K N+++R+ R K+P + L+AL Y I L + Sbjct: 168 WLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLY 210 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 58/368 (15%), Positives = 113/368 (30%), Gaps = 44/368 (11%) Query: 175 RIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRD 234 I + + F K+ F+ P +L++ + + + + + Sbjct: 39 NFIENKTRNIKLIFHAKNYKFI---LPEITPKEAVLKSKTFASALFIPVEYRAKNSI--- 92 Query: 235 NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIR------------QLEKDDV 282 + L + F I +V + + R + + + Sbjct: 93 GLYWVLLGHLPFMTKRGHFIINGVPRVVLNQMVRSPGLYYKTTANPQNVSNQVSINDSSH 152 Query: 283 KLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLD 342 + I + + + + ++ L G+ Sbjct: 153 TSPVFYSDIIPNRGTWLRLEIDRKKNIWIRMKRVDKIPMMLFLQALGYDLHCIEKLLYSR 212 Query: 343 HGPYISETLRVDPTNDRLSALVEIYRMMR--------------------------PGEPP 376 L D D SAL +I + + Sbjct: 213 KFLNCDYLLNTDHPADSNSALKKIKVEIEQQKVLKLAALEALDDDDPDIAKQLDYIEKTT 272 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 T E + FF+ YDLS +GR + N+ L +L++ DI K+LI Sbjct: 273 TPEMGKDFLFQSFFNPASYDLSPIGRFQLNKKLNLSIPSDYTVLTEFDIYFATKELIKRA 332 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 DDIDHL RRIRS GE+ E Q G+ R+++ + ++++ +L + Sbjct: 333 TTMSNSDDIDHLQTRRIRSCGELLEIQLGEGIERLQKTIIDKINNTNLKKFAKHSSTYKR 392 Query: 497 PISAAVKE 504 S+++ Sbjct: 393 GTSSSIYR 400 >UniRef50_D0FY17 Beta subunit of RNA polymerase 1 n=1 Tax=Dunaliella salina RepID=D0FY17_DUNSA Length = 916 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 125/261 (47%), Positives = 174/261 (66%), Gaps = 2/261 (0%) Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPG 536 ++ L L +IN K ++A++EFFG+S LSQFMDQ NPL+E+THKRR+S++GPG Sbjct: 655 KKDISQQLKGLTSSSIINNKAFNSAIREFFGTSPLSQFMDQINPLAELTHKRRLSSMGPG 714 Query: 537 GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTD 596 G+TR+ A +R +HPTHYGR+CPIETPEG N GL+NS++ YA+ N G LE+P+ KV Sbjct: 715 GVTRDTATLAIRGIHPTHYGRICPIETPEGKNTGLVNSMTTYARVNSSGILESPFYKVYK 774 Query: 597 GVVTDEIH--YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654 G V YL+A +E +A A+ + G + ++ R + SR V Y+ Sbjct: 775 GQVQKNTGMYYLNAEQEEKIKLAAADLYVSPIGFLPKAMIPARIAETFTKISRSSVQYIG 834 Query: 655 VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714 VS Q++S+ ASLIPFLEHDDANRALMG+NMQRQAVP +R ++P+VGTG+E DSG Sbjct: 835 VSPLQMISIAASLIPFLEHDDANRALMGSNMQRQAVPLIRHERPIVGTGLEGRAVSDSGH 894 Query: 715 TAVAKRGGVVQYVDASRIVIK 735 ++ G+V YV A +I++ Sbjct: 895 VIQSRYSGLVTYVSAKKIIVS 915 Score = 156 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 81/454 (17%), Positives = 150/454 (33%), Gaps = 45/454 (9%) Query: 24 VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRLGEPVFD 81 + +++Q SF + +E+ GL F PI + + + Y L P + Sbjct: 8 LSDFVTVQRQSFFELLEK------GLIEEFAKRNPITNGRKDYSFFFYPEYYILTRPEYK 61 Query: 82 VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGT 141 E ++ +Y++ L V +++ + K I + VY+G IPLMT G F++NG Sbjct: 62 PHEAILKNKSYTSKLFVPVQITNKKH-------KQIVLKWVYIGNIPLMTKRGHFILNGA 114 Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGK-----------------------VLYNARIIP 178 RVIV+Q+ RSPG+++ + + K + +I Sbjct: 115 ARVIVNQILRSPGIYYQQKIYENYEDNKGSKSNAQDDETGEGSSLQPVNTYKRFYCDLIC 174 Query: 179 YRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFE--KVIFEIRDNK 236 RGSWL E D + N++ ++ + K+P L A+ + + IL + KV+ + NK Sbjct: 175 MRGSWLRIEMDKEKNIWAQMKKGPKIPIYWFLLAMGLSEKVILKSIMDPQKVLGNLERNK 234 Query: 237 LQMELVPERLRGETASFDIEANGKVYVEK-GRRITARHIRQLEKDDVKLIEVPVEYIAGK 295 +L + + T + + + + L D K Sbjct: 235 AVPKLSKKNKKDLTTARSAMQADETLKSTGEDKKNLEIKQDLIVADSLNESNSQTDKTTK 294 Query: 296 VVAKDYIDESTGELICAANMELSLD----LLAKLSQSGHKRIETLFTNDLDHGPYISETL 351 + + E T + +L + L K+++ + + D +E Sbjct: 295 LFWPEETREGTKGALTGFPHDLKNEGEENSLNKINEVNFVSEFSNKSVKNDFIEEDNEKA 354 Query: 352 RVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLR 411 + Y P + D S K + R Sbjct: 355 IKTNASTSSKKQNYPYLKNTPEAWQAIYTLLHSKTKISNVSKTKDKSDQKDTKGVSDIAR 414 Query: 412 EEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDI 445 I L +I G + Sbjct: 415 SAIRADETLKSARTDKNQDSIIKETFGDTKFPGR 448 >UniRef50_B2X254 RNA polymerase beta subunit n=1 Tax=Floydiella terrestris RepID=B2X254_9CHLO Length = 808 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 126/274 (45%), Positives = 176/274 (64%), Gaps = 4/274 (1%) Query: 466 VGLVRVERAVKE--RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSE 523 G + ++ +E + L D INA+ ++ A++EFFG+S LSQF+DQ NPL+E Sbjct: 495 KGFDKEKKNFREAPEFLITRKKNLRISDFINARYVNGALREFFGTSPLSQFLDQINPLAE 554 Query: 524 ITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNE 583 ITHKRR + LGPGG++ + A VR +HPTHYGR+CP+ETPEG N GL+N+L+ YA+ N Sbjct: 555 ITHKRRFTLLGPGGVSEDTATMAVRGIHPTHYGRICPVETPEGKNAGLVNTLTGYARVNS 614 Query: 584 YGFLETPYRKVTDGVVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE 641 G +ETP+ KV + + +LS +E V+A + ++ + G + + RS GE Sbjct: 615 DGLIETPFLKVFKSQIQKKKGFFFLSPEQEEKSVLATGDLSISKTGFLPKGFLPARSLGE 674 Query: 642 SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVG 701 + S V +M VS Q++SV SL+PFLEHDDANRALMGANMQRQAVP R+++P+VG Sbjct: 675 FTKVSSKSVGFMSVSPIQLISVATSLVPFLEHDDANRALMGANMQRQAVPLARSEQPIVG 734 Query: 702 TGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIK 735 TG E DSG AK GG V Y A+++V+ Sbjct: 735 TGTEAKAISDSGAAVRAKFGGFVCYASANKVVVC 768 Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 120/292 (41%), Gaps = 28/292 (9%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YR 74 P +S+Q SF +F+E+ GL F PI + S +L + Y+ Sbjct: 2 VIQSYFR-PDFVSLQRKSFFRFLEK------GLVEEFSKRSPITNISKGLKLCFYPEFYK 54 Query: 75 LGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNG 134 L P ++ + + TYSA L V ++L ++ K+I + ++ ++PLMT+ G Sbjct: 55 LVPPKWNPNKAILYDRTYSAKLFVPVQLTSFK-------TKEIVFEWAFLCDLPLMTNRG 107 Query: 135 TFVINGTERVIVSQLHRSPGVFFDSDKGK----------THSSGKVLYNARIIPYRGSWL 184 F++NG RVI++Q+HR PG+++ K S Y A +I RG+WL Sbjct: 108 HFLVNGVARVIINQIHRGPGIYYTKTTKKKEILDVETDRKSFSNLTRYYADVISMRGNWL 167 Query: 185 DFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIR--DNKLQMELV 242 D K+ + + + K+P L E I + +N L EL Sbjct: 168 RLSVDSKNRFWAEMKKTPKIPLLWFLLGTGLRKETIFSKINNSSLLYDSFCNNILLSELD 227 Query: 243 PERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 E+ ++F V KG++ R L + K P Y G Sbjct: 228 QEKYFYVDSTFSAHEKMSSLVLKGKQKNTGKKRNLREWFYKHFMNPRTYDLG 279 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 107/315 (33%), Gaps = 31/315 (9%) Query: 195 FVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFD 254 F ++ + P IL Y+ + + + + + L L F Sbjct: 52 FYKLVPPKWNPNKAILYDRTYSAKLFVPVQLTSFKTKEIVFEWAF-LCDLPLMTNRGHFL 110 Query: 255 IEANGKVYVEKGRRITARHIRQL------------EKDDVKLIEVPVEYIAGKVVAKDYI 302 + +V + + R + + K L + I+ + Sbjct: 111 VNGVARVIINQIHRGPGIYYTKTTKKKEILDVETDRKSFSNLTRYYADVISMRGNWLRLS 170 Query: 303 DESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH-------GPYISETLRVDP 355 +S + LL L +G ++ + + L + Sbjct: 171 VDSKNRFWAEMKKTPKIPLLWFLLGTGLRKETIFSKINNSSLLYDSFCNNILLSELDQEK 230 Query: 356 ---TNDRLSALVEIYRMMRPGEPPT---REAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 + SA ++ ++ G+ + F F + YDL GR+ NR L Sbjct: 231 YFYVDSTFSAHEKMSSLVLKGKQKNTGKKRNLREWFYKHFMNPRTYDLGPHGRLCINRKL 290 Query: 410 LREEIEGSG-----ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQF 464 + + L+ D++ L+ + G G DDID+L NRR+R+ + + Q Sbjct: 291 GLSFTQSALLNKMSTLTPYDLLFATDYLLKLLAGLGTTDDIDNLKNRRVRTSSDFIQLQI 350 Query: 465 RVGLVRVERAVKERL 479 +GLVR+E+ ++++L Sbjct: 351 GIGLVRLEKKIRDKL 365 >UniRef50_B2X2B8 RNA polymerase beta subunit n=1 Tax=Chlamydomonas moewusii RepID=B2X2B8_CHLMO Length = 795 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 122/261 (46%), Positives = 176/261 (67%), Gaps = 2/261 (0%) Query: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 L TL ++IN K ++A++EFFG+S LSQFMDQ NPL+EITHKRR+S++GPGG Sbjct: 532 NLQKNQTKTLNISNLINNKSFNSALREFFGTSPLSQFMDQINPLAEITHKRRLSSMGPGG 591 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDG 597 +TR+ A E+R +HPTHYGR+CP+ETPEG N GL+NSL+ Y++ N G LE+P+ +V G Sbjct: 592 VTRDTATLEIRGIHPTHYGRICPVETPEGKNTGLVNSLTNYSRVNSLGILESPFYRVYKG 651 Query: 598 VVTDE--IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDV 655 +V + YLSA +E + A+ + + + R + + R+ V+Y+ V Sbjct: 652 MVQKNLGLFYLSAEQEEKTKLGAADLFVSSIDFLENNNIPVRIGEKFTKIHRNLVEYVGV 711 Query: 656 STQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVT 715 S Q++S+ SLIPFLEHDDANRALMG+NMQRQAVP +R ++P+VGTG+E DSG Sbjct: 712 SPTQMISIATSLIPFLEHDDANRALMGSNMQRQAVPVIRPERPIVGTGLESRAVSDSGHV 771 Query: 716 AVAKRGGVVQYVDASRIVIKV 736 ++ GV+ YV + +I+++ Sbjct: 772 IQSRFSGVITYVSSDKIIVRT 792 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 108/508 (21%), Positives = 196/508 (38%), Gaps = 77/508 (15%) Query: 18 RPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS--YRL 75 V +P L IQ SF +E+ GL F PI S + E+ + Y+L Sbjct: 2 LNSVYYLPDFLEIQRQSFFTLLEK------GLIDEFSKRNPITSKKKDVEVYFYPEYYKL 55 Query: 76 GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGT 135 P + ++ +R +Y++ L + +++ + I+ + Y+G +PLMT G Sbjct: 56 TLPTYSPRQAILRCKSYTSKLYMPVQITFKK-------TNTIRLKWAYIGNLPLMTKRGH 108 Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSS--------GKVLYNARIIPYRGSWLDFE 187 F++NG R+IV+Q+ RSPG+++ + + Y A +I RG+WL E Sbjct: 109 FILNGAPRIIVNQIIRSPGIYYQEKLYERFTDKLSDKPNVTYKRYYADLICLRGTWLRLE 168 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 D +++ + + K+P L + + IL+ E P+R+ Sbjct: 169 IDRDKDIWAQTKKGPKIPIYWYLIGMGLSEHIILNSILE----------------PQRIL 212 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 A F ++ K R + + +E+ + + Sbjct: 213 QNLAPFTLDRKS---TRKKRNDYSYVKNPPDAWKEIYLELSRSPKSVETST--------- 260 Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIY 367 S + K T +++ A + Sbjct: 261 ------------------SATTSKDNSLYSKGSTTKDESPRRT-------NKVDARNALT 295 Query: 368 RMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIID 427 + + E N F + YDLS GR FNR L + E L+ D++ Sbjct: 296 SKKKSLQKEASEQGRKWLFNKFMNPRAYDLSRQGRAAFNRKLGLKIDENQLTLTAQDLLS 355 Query: 428 VMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD-T 486 LI + G +DDIDHL NRR+R+ GE+ + Q + +VR+E+ ++E+++ ++ + Sbjct: 356 ATDYLIKVEKGLKPIDDIDHLKNRRVRTSGELIQIQIGIAVVRLEKTIREKINKTEMQFS 415 Query: 487 LMPQDMINAKPISAAVKEFFGSSQLSQF 514 D IS+ K+ + +L Q Sbjct: 416 FSLGDAPRTSRISSNFKKDSSTQKLKQL 443 >UniRef50_B3SF17 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SF17_TRIAD Length = 617 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 182/419 (43%), Positives = 263/419 (62%), Gaps = 10/419 (2%) Query: 659 QVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVA 718 + S+ + + N+ MG ++++ + + V + ++ + Sbjct: 199 DIDSLANRRVRSVGELVENQFRMGLVRMQKSIVDRMSSVEIDNVMPHDLVNSKTLMSYLR 258 Query: 719 KRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVE 778 + G+ Q + E + + LT+ + TCINQ P V +G+ VE Sbjct: 259 EFFGISQLSQFMDQTNPLAEITHKRRLSALGPGGLTRERAGFEGTCINQRPIVKVGQYVE 318 Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 GD+LADG STD+GELALG+N+ VAFMPWNGYNFEDSIL+SER+V++D +T++HI E Sbjct: 319 AGDILADGASTDMGELALGKNILVAFMPWNGYNFEDSILLSERLVKDDIYTSVHINEYEI 378 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 V+RDT+LGPEEIT DIPNV E L+ LDE+GIV IGA+V GDILVGKVTPK E+ LTPE Sbjct: 379 VARDTRLGPEEITRDIPNVNEENLTHLDETGIVNIGAQVKPGDILVGKVTPKTESPLTPE 438 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 EKLLRAIFGEKA+DV++SSLRVP G G ++DV++FT+ GV+KD+RA+ IE ++++ K Sbjct: 439 EKLLRAIFGEKAADVRNSSLRVPPGEKGVIVDVKIFTKRGVQKDERAISIERNEIEKFSK 498 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVE----------AEKLDKLPRDRWLELGLTDEEKQ 1008 D+ +E +I+E +F++++ +L V+ LD L + L L D++ + Sbjct: 499 DMEDEKRIIEDYVFNKVKVILFGKKVKDKSNKSITIDQNFLDDLDNKQVWSLELDDKKSK 558 Query: 1009 NQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMA 1067 +++L E YD + EK + K K+ GDDL GVLKI+K+Y+A K +IQPGDKMA Sbjct: 559 EDIQKLEEFYDNYLKKLEKDYKHKVEKLQSGDDLPQGVLKIIKIYVANKLKIQPGDKMA 617 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 132/294 (44%), Positives = 203/294 (69%), Gaps = 1/294 (0%) Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP-VEYIAGKVVAKDYIDESTGELICA 312 ++ +KG R+T R ++ EK++ + + I K +AKD ++ +TGE++ Sbjct: 8 VDANTKEIIFKKGIRVTPRILKDFEKNNTDRYYITTEDDIKRKFLAKDIVNLTTGEVLYE 67 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 + E++ +++ + I + N++D G +I +T+ +D D AL +IY+++RP Sbjct: 68 STQEVTQEIIDSVKALNINEIVIIDVNNVDSGSFIRDTIVLDKNKDEEQALADIYKVLRP 127 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKL 432 GEP T E A+ LFE++FF ++YDLSAVGRMK N+ + + L+KDDII ++K L Sbjct: 128 GEPSTPEVAKQLFESMFFDNEKYDLSAVGRMKINKKHDLDVPHTTTALTKDDIIVIIKHL 187 Query: 433 IDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDM 492 ++++ G G VDDID L NRR+RSVGE+ ENQFR+GLVR+++++ +R+S ++D +MP D+ Sbjct: 188 LNLKCGIGTVDDIDSLANRRVRSVGELVENQFRMGLVRMQKSIVDRMSSVEIDNVMPHDL 247 Query: 493 INAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFE 546 +N+K + + ++EFFG SQLSQFMDQ NPL+EITHKRR+SALGPGGLTRERAGFE Sbjct: 248 VNSKTLMSYLREFFGISQLSQFMDQTNPLAEITHKRRLSALGPGGLTRERAGFE 301 >UniRef50_Q8TXI6 DNA-directed RNA polymerase second-largest subunit, the N-terminal part n=1 Tax=Methanopyrus kandleri RepID=Q8TXI6_METKA Length = 525 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 82/502 (16%), Positives = 180/502 (35%), Gaps = 52/502 (10%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNA-RIIPYRGSWLDFEFDPKDNLFVRIDRRRK 203 +++ S D + + + YR + E ++ RR+ Sbjct: 29 LIAHHFLSYHWLIDEGLQQLIEQMEPIEPEVEGASYRIEFERIEVGEPSSIEPDGARRKI 88 Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR---------------- 247 P LR + Y+ ++ + E+ + + + +P +R Sbjct: 89 YPMEARLRNMLYSAPLYAEIVMYEDGEEVERDNVYVGELPVMVRSKVCNTYGLSEEELIE 148 Query: 248 ------GETASFDIEANGKVYVEKGRRITAR-HIRQLEKDDVKLIEVPVEYIAGKVVA-- 298 F I + +V + R ++ + V Y G+ Sbjct: 149 VGEDPKDPGGYFIINGSERVLMSLEDIAPNRRVNEKIRERGVLDEVRSRVYSRGERYRGP 208 Query: 299 KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET---LRVDP 355 D ID +I + ++ L G E + + ++E L + Sbjct: 209 VDVIDRKGRLVIDMPAVYRKFPVVILLRALGLTEEEIMEGVGPEFATIMAEQMRVLVKEE 268 Query: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415 + AL I R+ RP E+ E + +Y L + + E+++ Sbjct: 269 IGSQEDALEYIGRLSRP-----DESREERIKRGKEVLAKYFLPHIAEVD--DLDDDEKLK 321 Query: 416 GSGILSKDDIIDVMKKLIDIRNGKGEVD---DIDHLGNRRIRSVGEMAENQFRVGLVRVE 472 D+++ +++++++++ + +V D DH N+RI+ G++ + ++ Sbjct: 322 EVFRKKADEVLKMVREVLELKYRRVKVKSVRDRDHYANKRIKLAGDLLYEAYEYAFQQLA 381 Query: 473 RAVKERLSL--GDLDTLMPQDMINAKPISAAVKEFFGSSQL-----------SQFMDQNN 519 R ++ + + ++ ++ ++ + SQ +++ Sbjct: 382 REMRYQFERAYSRGREPTIRYIVRPDKVTDHIRSCMSTGTWRTGHYRPRTGVSQILERYT 441 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 +S ++H RRI A G+ + E R +HPTH GR+CP ETPEG N G I +L++YA Sbjct: 442 WMSTMSHLRRIRAATELGVGKWSIPKEARYLHPTHMGRLCPNETPEGANCGAIKNLALYA 501 Query: 580 QTNEYGFLETPYRKVTDGVVTD 601 + E ++ + + + Sbjct: 502 EVVHKDADEDEVIEILEEIGLE 523 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 52/253 (20%), Positives = 95/253 (37%), Gaps = 52/253 (20%) Query: 11 IRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSG--NSEL 68 +R++ V P L++ S+ I++ GL+ + PI+ + + Sbjct: 14 LRRNEELLGDVKTHP-LIAHHFLSYHWLIDE------GLQQLIEQMEPIEPEVEGASYRI 66 Query: 69 QYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIK 118 ++ +GEP E ++R + YSAPL ++ + ++++ Sbjct: 67 EFERIEVGEPSSIEPDGARRKIYPMEARLRNMLYSAPLYAEIVM--------YEDGEEVE 118 Query: 119 EQEVYMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPG 154 VY+GE+P+M G F+ING+ERV++S +P Sbjct: 119 RDNVYVGELPVMVRSKVCNTYGLSEEELIEVGEDPKDPGGYFIINGSERVLMSLEDIAPN 178 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR-RKLPATIILRAL 213 + + +V R D K L + + RK P I+LRAL Sbjct: 179 RRVNEKIRERGVLDEVRSRVYSRGERYRGPVDVIDRKGRLVIDMPAVYRKFPVVILLRAL 238 Query: 214 NYTTEQILDLFFE 226 T E+I++ Sbjct: 239 GLTEEEIMEGVGP 251 >UniRef50_A9TCU8 Predicted protein n=6 Tax=Physcomitrella patens subsp. patens RepID=A9TCU8_PHYPA Length = 689 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 92/681 (13%), Positives = 205/681 (30%), Gaps = 92/681 (13%) Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + + V+ + ++ +K + I Y + + + C Sbjct: 43 YIVNLIKNITVDNNKIFNNVYVSSNQKTYQECINTLSTYECSIIADDRVVLTIPIPIGCC 102 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYR---- 368 + ++ + Y++ + + + + + Sbjct: 103 YKPLEEASAIRGSFVIEGRKNVLMCQERNYTFRYLARKEKCELQLSKCHCEIYMVNGVLK 162 Query: 369 -MMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL------- 420 + A + S R LS K LL E + L Sbjct: 163 VSLSHNNLVNIFAVMKVLRKTIASAKREILSWTNHPKEVSRLLLESQLDATTLDSNPTCS 222 Query: 421 ------------SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 + ++ + I+ + DD D L + + + ++ Sbjct: 223 TERILATLDDDKKVKMLSLMICRFIETILSLRQEDDRDCLSFKCVHTPADIVRRCIE--- 279 Query: 469 VRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQL------------SQFMD 516 R+ + ++++ + +N IS ++ F + SQ + Sbjct: 280 KRINKLNQQKIRSNSKQKAVIVSALNR--ISKDIQSNFKTGIWEGYTQGDNKRTISQVLS 337 Query: 517 QNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLS 576 + L ++H RR+ +ERA +R +HPT G +CP ETPEGP++G + LS Sbjct: 338 SKSTLDSLSHVRRVEI-----SPKERASAIMRQIHPTQLGYICPCETPEGPDVGAVKYLS 392 Query: 577 VYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTC 636 Y V V + + L + ++ + ++ + Sbjct: 393 STCTITPY---------VDSDDVLNHLGVLPQGNDALFINGLFVTRTSKDNVL-RSIKVY 442 Query: 637 RSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN---------MQR 687 + KGE+ +F Y + + L A + +N Sbjct: 443 KRKGEAFMFVSAY--YSSDKEIHIQTTRGRYSRPLLICTNGSAPVCSNTTVDNIYKANTL 500 Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGV-----TAVAKRGGVVQYVDASRIVIKVNEDEMY 742 + + + + T + + V + Y + ++ V + M Sbjct: 501 EMIDATEQMQCFIATTHDSICNQHTHVEIHPSFMFGLSASMTPYANFNQSSRIVFQSAMN 560 Query: 743 PGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRV 802 + ++ + ++ Q P + ++ + G N+ + Sbjct: 561 KQAMPLALHIMISMVSDSKILTYAQKPICAT-------------TISNTIKEYNGVNVVI 607 Query: 803 AFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL 862 A + ++GYN EDS+L ++ + F++I + + + D + Sbjct: 608 AVLSYSGYNQEDSLLFNKSSIDRGLFSSIKYEVVEIIENKFMNETLVYIPDGDILR---- 663 Query: 863 SKLDESGIVYIGAEVTGGDIL 883 D GIV IG +V G L Sbjct: 664 ---DNDGIVLIGQKVKDGLTL 681 >UniRef50_UPI0001C41F1A DNA-directed RNA polymerase subunit B'''' RpoB2 n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F1A Length = 520 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 82/491 (16%), Positives = 165/491 (33%), Gaps = 51/491 (10%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWL-DFEFDPKDNLFVRIDRRRK 203 IV +S F ++ + + + + Sbjct: 18 IVDHHIKSYNDFVENRIQNIIDITEPITIENEKGNYTLRTGKLTIEKPFTKEADGSKSMI 77 Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR---------------- 247 P LR LNY+ L++ + + + + L Sbjct: 78 YPTEARLRNLNYSAHMYLEMALHDNNSDEEEELENVYIGELPLMLKSSICHLHGLSDEEL 137 Query: 248 --------GETASFDIEANGKVYVEKGRRITARHIRQ----LEKDDVKLIEVPVEYIAGK 295 F + + + V + I + +E K I ++ Sbjct: 138 VKRGEDPKDPGGYFIVNGSERAVVTMEEIAPNKIILERIDEIEDRHAKAIVTSIKSGFRA 197 Query: 296 VVAKDYIDESTGELICAANMEL---SLDLLAKLSQSGHKRIETLFTNDLDHGP---YISE 349 + +Y + + + L+ L G + + D YI++ Sbjct: 198 RITLEYKKPRKSGVFLRISFPYVPGEIPLVILLRALGLSTDGEIISKISDDFNFQMYIAD 257 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 L+V + +L + + + + ++AA N + Sbjct: 258 DLQVSEKDLKLDSDLLLSLSNEERDEYLQKAAIKYIGNRVAKGMTEEYRIKRAEDVIDRY 317 Query: 410 LRE---EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 L + ++ + L+ + G+ E D DH N+R+R G++ E+ FRV Sbjct: 318 LLPHMGIESDKRYDKAIYLAEMTEMLLQVIEGQREPHDKDHYTNKRLRVSGDLTEDLFRV 377 Query: 467 GLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQ 517 + R + RL L + + + ++ +K + SQ +D+ Sbjct: 378 AFSSLTRDMSYRLERSLSRGKELSIKQAVRSDVLTENIKHAIATGNWVGGRAGVSQLLDR 437 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 + ++ ++H RR+ + LTR + FE RD+HPT +G++CP ETPEGPN GL+ +L++ Sbjct: 438 VSYMATLSHLRRVVS----PLTRSQPHFEARDLHPTQFGKICPNETPEGPNCGLVKNLAL 493 Query: 578 YAQTNEYGFLE 588 + +E E Sbjct: 494 MCKISEGFDPE 504 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 49/243 (20%) Query: 15 FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYR 74 +G D ++ + S+ F+E + + I++ GN L+ Sbjct: 6 WGLVDSFFDKYDIVDHHIKSYNDFVENRIQNIIDITEPIT----IENEKGNYTLRTGKLT 61 Query: 75 LGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYM 124 + +P + E ++R + YSA + +++ L + E + + VY+ Sbjct: 62 IEKPFTKEADGSKSMIYPTEARLRNLNYSAHMYLEMALHDNNSDEEE------ELENVYI 115 Query: 125 GEIPLM------------------------TDNGTFVINGTERVIVSQLHRSPGVFFDSD 160 GE+PLM G F++NG+ER +V+ +P Sbjct: 116 GELPLMLKSSICHLHGLSDEELVKRGEDPKDPGGYFIVNGSERAVVTMEEIAPNKIILER 175 Query: 161 KGKTHSSGKVLYNARIIPYRGSWLDFEFDP--KDNLFVRIDR---RRKLPATIILRALNY 215 + I + + E+ K +F+RI ++P I+LRAL Sbjct: 176 IDEIEDRHAKAIVTSIKSGFRARITLEYKKPRKSGVFLRISFPYVPGEIPLVILLRALGL 235 Query: 216 TTE 218 +T+ Sbjct: 236 STD 238 >UniRef50_O27123 DNA-directed RNA polymerase subunit B'' n=19 Tax=Euryarchaeota RepID=RPOB2_METTH Length = 519 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 83/504 (16%), Positives = 174/504 (34%), Gaps = 55/504 (10%) Query: 145 IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKL 204 +V S F + + + + + + YR + + + Sbjct: 24 LVDHHIHSYNDFVSNRIQEIIDTSEPIELEQG-KYRVETGKVSIEKPFIKEADGSKSKIY 82 Query: 205 PATIILRALNYTTEQILDLFFEKVIFEIRD-NKLQMELVPERLR---------------- 247 P LR L Y+ L++ K + K+ + +P L+ Sbjct: 83 PTEARLRNLTYSAHMSLEMRLLKEGGPETEFEKVYIGELPVMLKSEICHLHGLSRKELME 142 Query: 248 ------GETASFDIEANGKVYVEKGRRITARHIRQ----LEKDDVKLIEVPVEYIAGKVV 297 F + + + V + I + +++ + I + + Sbjct: 143 KGEDPADPGGYFIVNGSERSIVTMEEIAPNKIILERIGEEDENRARAIVTSIRSGFRARI 202 Query: 298 AKDYIDESTGELICAANMEL---SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 + +Y + + + L+ L G + + T+ D Y + + D Sbjct: 203 SLEYRKPRKTGVFLRISFPYVPGEIPLVILLRALGLATDQEIITSISDDFNY--QMIAAD 260 Query: 355 PTNDRLSALVEIYRMMRPGEPPTRE-----AAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 L L + M+ + R +A N D Sbjct: 261 DIQVSLDRLNLNKKEMKELDEEDRREYLIRSAIKYIGNRVAKGMTEDYRIKRAEDVIDRY 320 Query: 410 LRE---EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 L + + ++ + L+ + +G+ D DH N+R+R G++ E+ RV Sbjct: 321 LLPHIGTEPEKRLEKATYLAEMTEMLLQVISGERRPHDKDHYTNKRLRVSGDLMEDLLRV 380 Query: 467 GLVRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQ 517 + R + +L + + + ++ +K + SQ +D+ Sbjct: 381 AFTSLSRDMSYQLERSLARGKEPSVKQAVRSDVLTENLKHAIATGNWVGGRAGVSQLLDR 440 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 + + ++H RR+ + L+R + FE RD+HPT +G++CP ETPEGPN GL+ +L++ Sbjct: 441 TSYMGTLSHMRRVVS----PLSRSQPHFEARDLHPTQFGKICPNETPEGPNCGLVKNLAL 496 Query: 578 YAQTNEYGFLETPYRKVTDGVVTD 601 A+ +E G + +V V + Sbjct: 497 LAKISE-GSDASEVEEVIKMGVVN 519 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 60/378 (15%), Positives = 133/378 (35%), Gaps = 59/378 (15%) Query: 7 EKKRIRKD-FGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 +K ++K +G D L+ + S+ F+ ++ + PI+ G Sbjct: 3 WRKSMKKSAWGLVDAFFDKYDLVDHHIHSYNDFVSN------RIQEIIDTSEPIELEQGK 56 Query: 66 SELQYVSYRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 ++ + +P E ++R +TYSA + +++RL + Sbjct: 57 YRVETGKVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEMRL-------LKEGGP 109 Query: 116 DIKEQEVYMGEIPLM------------------------TDNGTFVINGTERVIVSQLHR 151 + + ++VY+GE+P+M G F++NG+ER IV+ Sbjct: 110 ETEFEKVYIGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVNGSERSIVTMEEI 169 Query: 152 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP--KDNLFVRIDR---RRKLPA 206 +P G+ + I + + E+ K +F+RI ++P Sbjct: 170 APNKIILERIGEEDENRARAIVTSIRSGFRARISLEYRKPRKTGVFLRISFPYVPGEIPL 229 Query: 207 TIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDI---EANGKVY 262 I+LRAL T ++I+ + +++ + + ++ + + Sbjct: 230 VILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDRLNLNKKEMKELDEEDRREYLI 289 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 + I R + + +D I+ + I ++ + E++ LL Sbjct: 290 RSAIKYIGNRVAKGMTEDY--RIKRAEDVIDRYLLPHIGTEPEKRLEKATYLAEMTEMLL 347 Query: 323 AKLSQSGHKRIETLFTND 340 +S + +TN Sbjct: 348 QVISGERRPHDKDHYTNK 365 >UniRef50_Q5ZH39 RNA polymerase beta subunit (Fragment) n=4 Tax=Pseudomonas mendocina RepID=Q5ZH39_PSEME Length = 382 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 172/227 (75%), Positives = 196/227 (86%) Query: 624 DEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGA 683 +EG +++LV R E ++ + + V MDVS +QVVSV ASLIPFLEHDDANRALMG+ Sbjct: 154 RQEGQLIDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGS 213 Query: 684 NMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYP 743 NMQRQAVPTLRADKPLVGTGMER VA DSGV VA+RGGV+ VDASRIV++VN+DE+ Sbjct: 214 NMQRQAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVNDDEVET 273 Query: 744 GEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVA 803 GEAG+DIYNLTKYTRSNQNTCINQ P VS G+ V RGD++ADGPSTD+GELALGQNMRVA Sbjct: 274 GEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDQVSRGDIMADGPSTDMGELALGQNMRVA 333 Query: 804 FMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI 850 FMPWNG+NFEDSI +SERVVQEDRFTTIHIQEL CV+RDTKLGPEEI Sbjct: 334 FMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEI 380 Score = 77.6 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 31/271 (11%), Positives = 75/271 (27%), Gaps = 54/271 (19%) Query: 688 QAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG 747 + V ++ V + + S V+ ++ +++ + M Sbjct: 162 ELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVP 221 Query: 748 IDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPW 807 T P V G E + ++ V + Sbjct: 222 ---------------TLRADKPLVGTG-----------------MERNVARDSGVCVVAR 249 Query: 808 NG--YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKL 865 G + D+ + RV ++ T +I + + Sbjct: 250 RGGVIDSVDASRIVVRVNDDEVETG--------------EAGVDIYNLTKYTRSNQNTCI 295 Query: 866 DESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVS 925 ++ +V G +V+ GDI+ +L + + A + +DS +S Sbjct: 296 NQRPLVSKGDQVSRGDIM-ADGPSTDMGELALGQNMRVAFMPWNGFNFEDSI-----CLS 349 Query: 926 GTVIDVQVFTRDGVEKDKRALEIEEMQLKQA 956 V+ FT +++ ++ ++ Sbjct: 350 ERVVQEDRFTTIHIQELTCVARDTKLGPEEI 380 >UniRef50_Q4MY95 DNA-directed RNA polymerase subunit beta n=1 Tax=Theileria parva RepID=RPOB_THEPA Length = 1005 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 120/820 (14%), Positives = 268/820 (32%), Gaps = 45/820 (5%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 + + + + + ++ ++ L E+ K Sbjct: 13 YINYFVNNIYNSLSRNINSKINKYYNYYKKSKIFKNIKFYFNLLTFESNYCCDSGQNKYL 72 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 + + +K + +I ++ I++S ++ N L L +L Sbjct: 73 YD----GYNSYYFINIPLQIKFNNLKSRFINYNIINIPKINQSGDIIL---NGYLRLPIL 125 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAE 382 + + + I + + V I + + Sbjct: 126 YLQLATNNISYIFNEKITRTYFIKIKNNIYLYIYLYDDFITVYINSYKIKNDLFSMYNNV 185 Query: 383 SLFENLFFSEDRYDLSAVGRMKFNRSLL------REEIEGSGILSKDDIIDVMKKLIDIR 436 S ++ V +K N DI+ ++ K +++ Sbjct: 186 SFKNKYINFSKIDNVIYVMNLKNNNIKYHIFDKTININNFVNNTMFMDILSIVNKFLNLN 245 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 K + ++L N+ SV + + ++V D L+ + I Sbjct: 246 LKKKFIQSSNNLINKSTNSV-------LKTIFRQFTKSVTIFDIEKYCDKLLYKKKIFRS 298 Query: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLT--RERAGFEVRDVHPTH 554 KE + + + DQ N LS +T+K +I+ G + + + +R + + Sbjct: 299 FNIVLFKEHLLVNPVIHYTDQLNVLSYLTNKFKINIFGYSNSSNDKFKVSTNLRKIQSDY 358 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNY 614 G + + TP+G GLI+ L+ +++ + + + + Y Sbjct: 359 IGFINIVNTPDGDTCGLISKLANNTILDKFKLKLIN----CNNEYFENFTKIDITSKNLY 414 Query: 615 VIAQAN-SNLDEEGHFVEDLVTCRSKGESSLFSRDQ-VDYMDVSTQQVVSVGASLIPFLE 672 + N N+ + F + E L + D+ +++ +S+ +IPFL Sbjct: 415 NMTSNNFINIKKNSTFKVKQIEVFKNNEFKLINFDKNKTNKNLNVFNTLSITELIIPFLF 474 Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI 732 ++D R LMG+ M QA+P + + P V T + + G++ V+ +I Sbjct: 475 NNDPCRGLMGSKMHTQALPLIYNEHPYVMTKYNHMNGLLFNKCITSLCEGIIVSVNNYKI 534 Query: 733 VIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLG 792 ++ +++ Y L + + N+ ++ P V +GE + G +LA Sbjct: 535 IVMDDKNRYLH-------YYLYPFNVLDYNSFVSYKPIVWVGEKINIGKILALPSDLKHS 587 Query: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEIT- 851 E LG N + + +NGY ED+I++++ ++ ED T+I KL E+T Sbjct: 588 EFTLGVNNLLNYSFYNGYEHEDAIVINKNLIIEDILTSISFDVYEEYLSINKLDYVELTL 647 Query: 852 ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS 911 + ++E G+ + GDIL K+ + + + + ++ Sbjct: 648 RHLLEYNRYNRYLINEVGVSSNQDYMLFGDILSTKIRYELSLSKNKKFFKVFKLIFKENK 707 Query: 912 D--VKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIE-------EMQLKQAKKDLSE 962 V L + G G +I ++ + + + + Sbjct: 708 KLIVYTKPLTIKRGGEGRLIKYEILGYSKFRQLDAMYPEINVSYLTLRFFIFKIDRINIG 767 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGL 1002 + G + ++ + P +G Sbjct: 768 DKLCGRHGNKGVVSKIVDNIDLPYTFRGLCPYSITSPIGA 807 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 159/1121 (14%), Positives = 325/1121 (28%), Gaps = 146/1121 (13%) Query: 235 NKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294 + + I + K L+ Y Sbjct: 6 GNNIYHTYINYFVNNIYNSLSRNINSKINKYYNYYKKSKIFKNIKFYFNLLTFESNYCCD 65 Query: 295 KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354 K D +++ L G I Sbjct: 66 SGQNKYLYDGYNSYYFINIPLQIK---FNNLKSRFINYNIINIPKINQSGDIILNGYLRL 122 Query: 355 PTNDRLSALVEIYRMMRPGEPPTREAAESL-FENLFFSEDRYDLSAVGRMKFNRSLLREE 413 P A I + T + D + + K L Sbjct: 123 PILYLQLATNNISYIFNEKITRTYFIKIKNNIYLYIYLYDDFITVYINSYKIKNDLFSMY 182 Query: 414 IEGSGILSKDDI--IDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471 S + ID + +++++N + D N M + + + Sbjct: 183 NNVSFKNKYINFSKIDNVIYVMNLKNNNIKYHIFDKTININNFVNNTMFMDILSIVNKFL 242 Query: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRIS 531 +K++ + + K I + + ++ D+ +I R + Sbjct: 243 NLNLKKKFIQSSNNLINKSTNSVLKTIFRQFTKSVTIFDIEKYCDKLLYKKKI--FRSFN 300 Query: 532 ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPY 591 + L +E +H T + +++ L+ + N +G+ + Sbjct: 301 IV----LFKEHLLVNP-VIHYT-------------DQLNVLSYLTNKFKINIFGYSNSSN 342 Query: 592 RKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVD 651 K +I I N+ + + L + L + + Sbjct: 343 DKFKVSTNLRKIQSDYIG-----FINIVNTPDGDTCGLISKLANNTILDKFKLKLINCNN 397 Query: 652 YMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 + ++ +L ++ N +Q + L+ + Sbjct: 398 EYFENFTKIDITSKNLYNMTSNNFINIKKNSTFKVKQIEVFKNNEFKLINFDKNKTNKNL 457 Query: 712 SGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCV 771 + ++ ++ ++ + + +M+ P + Sbjct: 458 NVFNTLSITELIIPFLFNNDPCRGLMGSKMHTQAL----------------------PLI 495 Query: 772 SLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831 P YN + +L ++ + + Sbjct: 496 YNEHPYVMTK----------------------------YNHMNGLLFNKCITSLCEGIIV 527 Query: 832 HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKG 891 + + D K NV + S + IV++G ++ G IL K Sbjct: 528 SVNNYKIIVMDDKNRYLHYYLYPFNVLDYN-SFVSYKPIVWVGEKINIGKILALPSDLKH 586 Query: 892 ETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGV-SGTVIDVQVFTRDGVEKDKRALEIEE 950 ++ T L + +D+ + N + + + + + +E Sbjct: 587 -SEFTLGVNNLLNYSFYNGYEHEDAIVINKNLIIEDILTSISFDVYEEYLSINKLDYVEL 645 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAE-------KLDKLPRDRWLELGLT 1003 + + I E G+ S +L + + +K + + Sbjct: 646 TLRHLLEYNRYNRYLINEVGVSSNQDYMLFGDILSTKIRYELSLSKNKKFFKVFKLIFKE 705 Query: 1004 DEEKQNQLEQLAEQYDELKHEFEKKLE--AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 +++ + L + + ++ +K R++ ++ ++ RI Sbjct: 706 NKKLIVYTKPLTIKRGGEGRLIKYEILGYSKFRQLDAMYPEINVSYLTLRFFIFKIDRIN 765 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 GDK+ GRHGNKGV+SKI D+PY G + +P+G +R+N+GQ LE G Sbjct: 766 IGDKLCGRHGNKGVVSKIVDNIDLPYTFRGLCPYSITSPIGALARINLGQFLEGSCGYFG 825 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 +I A + +++ ++ Sbjct: 826 LNFNCRIKAPINLYNYHLYSNMYLKNIFNSLNVYNNSY---------------------- 863 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD 1241 + S + L D +TG Q + + Y LKL H Sbjct: 864 ----------------------INFSIEKYLRDFKTGYQLKNFNLMLMPYFLKLMHTSKS 901 Query: 1242 KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGR 1301 K R+ G YS +TQQP+ GK G Q+FGEMEVWALE++G+AYT++E+ +K++ + Sbjct: 902 KFQYRTVGKYSSLTQQPVKGKRVNGSQKFGEMEVWALESHGSAYTIRELGYIKTNVKYFK 961 Query: 1302 TKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 +K E+F VL E++++ INI D Sbjct: 962 KFEHKGYKGS---------ETFKVLTLELKNVLININRVDN 993 >UniRef50_P21421 DNA-directed RNA polymerase subunit beta n=5 Tax=Plasmodium RepID=RPOB_PLAFA Length = 1024 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 131/831 (15%), Positives = 287/831 (34%), Gaps = 22/831 (2%) Query: 193 NLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETAS 252 +++ K I L E I +L + + N + + + T Sbjct: 1 MIYIVNPILVKNNYIISNLYLLLIQEIIYNLRYYILFLNNNINVKFNFIYYKIIILLTNI 60 Query: 253 FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + +I + + + +I + I + Sbjct: 61 NINSIDTIQNINNLLKIILTLKLNFININKIIKFNILIFILPFIYNNIIILNGLYKTCIQ 120 Query: 313 ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRP 372 + + + K + I L + + ++ Sbjct: 121 LFKKNNKIFIIKFKNNNKNIIYVYIYISLGLRIIFKISKLNIDCYFNNFKFNFLILLLYL 180 Query: 373 GEPPTREAAESLFENLFFSEDRYDLSAVG-----RMKFNRSLLREEIEGSGILSKDDIID 427 + N ++ + + N + + + I+ Sbjct: 181 NNIYINKNISLFIYNNIINKKILIYNYIKFIYSKYNNINNIISLKLFIIKLNKFNNIYIN 240 Query: 428 VMKKLIDIRNGKGEVDD--IDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLD 485 ++ L I+ D I+++ N++ S+ + + + L + + L++ Sbjct: 241 LLNILFSIKLNFSYYSDFYINNIYNKKFYSIIDNLLIKSKKYLKIFKYQL---LNINRNI 297 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGF 545 ++N K + E + L Q+ DQ N LSEI K +I+ + G ++ Sbjct: 298 YNNITLLLNNKKYINIILENININPLVQYSDQVNNLSEINQKFKINMITTGLNSKFILNN 357 Query: 546 EVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHY 605 ++R++ G + I T EG GL+N L+ N Y+ + ++ Sbjct: 358 DLRELPRNILGYISLINTNEGLTCGLVNYLTTNIFLNLKYLFVIYYKHIFYNRYNFKL-L 416 Query: 606 LSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGA 665 L+ + Y I+ N L + +F + + +K + + Q + + + ++S Sbjct: 417 LNIFNKNFYNISFNNIYLKKNINFNKTTILTINKNTFKICNITQ-NIIYIPFNYLLSFIE 475 Query: 666 SLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQ 725 +LIPF+ ++D+ R LM M Q VP + + + T + ++ + G+V Sbjct: 476 NLIPFIHYNDSIRNLMSIKMHTQIVPIIYPNLSNIITNYNFILNKYLNHLIISYQEGIVI 535 Query: 726 YVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLAD 785 YV +I+I+ + IY L Y + NQN + P V +GE V G +LA Sbjct: 536 YVSCIKIIIRDLFNRQ-------IIYYLNNYKKINQNILLIYKPIVWVGEKVNIGQILAI 588 Query: 786 GPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKL 845 + E +LG N+ V + + GY +ED+I++S +++ + +T++H+ Sbjct: 589 NSNLLNSEYSLGNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYEISLNIINN 648 Query: 846 GPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGET-QLTPEEKLLRA 904 PE + ++ + + LD+ GI+ G + +IL+ K+ ++ Sbjct: 649 IPEICSINLSKMYYKNIKHLDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINF 708 Query: 905 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQA--KKDLSE 962 +FG K K+ + G VI +++ K ++ + ++ K Sbjct: 709 LFGSKLRIFKNKPIISTIHDIGRVIKIEILPNHLYNKTEKNNIYLKFRIYIGIQKYLQLG 768 Query: 963 ELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQ 1013 + G I + + P + + Q+ + Sbjct: 769 DKICNRHGHKGIISYISEINDIPYLNNKIQPDIFISAISIPSRINIGQIFE 819 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 110/537 (20%), Positives = 206/537 (38%), Gaps = 53/537 (9%) Query: 809 GYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDES 868 YNF + ++ ++ I++ + + R + I L Sbjct: 513 NYNFILNKYLNHLIISYQEGIVIYVSCIKIIIR-DLFNRQIIYYLNNYKKINQNILLIYK 571 Query: 869 GIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTV 928 IV++G +V G IL + ++ + LL + +D+ + + + Sbjct: 572 PIVWVGEKVNIGQIL-AINSNLLNSEYSLGNNLLVGYGSYLGYEYEDAIIISRKILYNNL 630 Query: 929 IDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEK 988 + + E + K + ++ L+ + ++A + K Sbjct: 631 YTSLHLNIYEISLNIINNIPEICSI-NLSKMYYKNIKHLDKYGIIKEGTYILANNILISK 689 Query: 989 LDKLPRDR-------WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD 1041 L +P + + + + + + ++ + ++ Sbjct: 690 LMFMPFIFNNKSLINIINFLFGSKLRIFKNKPIISTIHDIGRVIKIEILPN---HLYNKT 746 Query: 1042 LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPL 1101 + ++Y+ +++ +Q GDK+ RHG+KG+IS I+ I D+PY N DI ++ + Sbjct: 747 EKNNIYLKFRIYIGIQKYLQLGDKICNRHGHKGIISYISEINDIPYLNNKIQPDIFISAI 806 Query: 1102 GVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL 1161 +PSR+NIGQI E G+ + + + + I Y + ++ Sbjct: 807 SIPSRINIGQIFEGIYGLNSLYLNTRYIISNNLNKNYYNNYNHIFNYYKYNYNNNFNINS 866 Query: 1162 STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF 1221 + + L + TG Sbjct: 867 KMSYN----------------------------------------YNKYYLKNPFTGNMI 886 Query: 1222 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 + + +Y KL H++ DK R G YS +TQQP+ G + GGQRFGEMEVWALEA+ Sbjct: 887 NNSICLNNIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVWALEAF 946 Query: 1282 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIE 1338 GA+Y +E T KSDD+ R + + + + E+F ++LKE++SL INIE Sbjct: 947 GASYLFKEFFTYKSDDIKSRKILKNYLFNNYKIKNTFISETFKLILKELQSLAINIE 1003 >UniRef50_UPI0000D52F81 DNA-directed RNA polymerase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F81 Length = 309 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 136/309 (44%), Positives = 202/309 (65%), Gaps = 9/309 (2%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQK---FIEQDPEGQYGLEAAFRSVF 57 M S+TEKK IRK FGK + L +P L+ +Q +S+++ F + E G + F+S+F Sbjct: 1 MQLSFTEKKNIRKSFGKLKESLSIPNLIEVQKNSYKELTEFNTEVTELTKGFDRVFKSIF 60 Query: 58 PIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIY--EREAPEGTVK 115 PI+ + + L+YVSYRL +P FDV+EC RG+TYS+ L+ LRLV+Y ++E + Sbjct: 61 PIEDLNDKATLEYVSYRLEKPKFDVEECIARGLTYSSALKCTLRLVVYEIDQENNTKDIL 120 Query: 116 DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175 KEQEVYMGE+P+MT++GTF+ NG +RV+V+Q+HRSPGVFFD DKGKTH+SGK+L+N R Sbjct: 121 SAKEQEVYMGEVPMMTNSGTFITNGVQRVVVNQMHRSPGVFFDHDKGKTHASGKLLFNCR 180 Query: 176 IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV--IFEIR 233 +IP RGSWLDFE+D KD L+ +IDR++K+ ++ +L AL YT +I+D F+E F+ + Sbjct: 181 VIPNRGSWLDFEYDVKDFLYFKIDRKKKIFSSTLLLALGYTKSEIVDEFYESEQYNFDPK 240 Query: 234 DNKLQMELVPERLRGETAS--FDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEY 291 K + + PE + + S G+V ++ G +I ++L D +K I V E Sbjct: 241 TEKWKTKFNPENYKAKNFSEEVIDAKTGEVVIKLGDKINFLSAKKLANDGLKDILVSRES 300 Query: 292 IAGKVVAKD 300 + GK + Sbjct: 301 LFGKFCTEI 309 >UniRef50_Q5ZH00 RNA polymerase beta subunit (Fragment) n=1 Tax=Pseudomonas aeruginosa RepID=Q5ZH00_PSEAE Length = 364 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 129/176 (73%), Positives = 154/176 (87%) Query: 485 DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAG 544 + LMPQD+INAKP++AA+KEFFGSSQLSQFMDQNNPLSEITHKRR+SALGPGGLTRERAG Sbjct: 1 EGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAG 60 Query: 545 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIH 604 FEVRDVHPTHYGRVCPIETPEGPNIGLINSL+ YA+TN+YGFLE+PYR V D +VTDEI Sbjct: 61 FEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVKDSLVTDEIV 120 Query: 605 YLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660 +LSAIEE ++VIAQA++ L+E+G V++LV R E ++ + + V MDVS +QV Sbjct: 121 FLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQV 176 >UniRef50_Q9EMY3 AMV066 n=2 Tax=Entomopoxvirinae RepID=Q9EMY3_AMEPV Length = 1196 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 175/1273 (13%), Positives = 351/1273 (27%), Gaps = 222/1273 (17%) Query: 142 ERVIVSQLHRS-PGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 E VI +++ +S + K Y + +G + + Sbjct: 49 EEVIYTKISKSGHEDVIMKITYEGKEDNKKSYLYSSLDNKGFYTYISISISIYRKITSLN 108 Query: 201 RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL------RGETASFD 254 + I + ++T +I DN + P + + Sbjct: 109 NKIEYKIISNKTYSHTEIRIPQYIAHGGNTSENDNSITQSNNPGGFFNVSKSLKKMVTTR 168 Query: 255 IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAAN 314 IE K + + + + + + + D + Sbjct: 169 IEQTYIYPKRKKTQKAYTYHLAFISKKPSFMMINEKLNPPQFLTLDIDFNPDKIKCVIDS 228 Query: 315 MELSLDLLAKLSQSGHKRIET----------LFTNDLDHGPYISETLRVDPTNDRLSALV 364 + L + + D + E + + A Sbjct: 229 KKTFLQIDIIALIIALSNDNIDVVYKKISSGFSDDISDSIKILIENTKNILSEYNNDARQ 288 Query: 365 EIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 + +++ E ++ F + L +GR K+N Sbjct: 289 YVDKIIEINYIKKYPKNEITLQDYFNNIFNDFLPHIGRGKYNE-------------KCMY 335 Query: 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL---VRVERAVKERLSL 481 +I ++++ D D+L RRI + ++ EN R + + R + Sbjct: 336 MISILRQSFVSIFQSDVYPDKDNLATRRISTAADIFENIIRTSIDNSFELARDKYKTYIS 395 Query: 482 GDLDTLMPQDMINAKP----ISAAVKEFFG-----SSQLSQFMDQNNPLSEITHKRRISA 532 G ++++ I+ A FF +S + + +N I IS Sbjct: 396 GSGKNNNINNILSQVKLLPQITQAFNNFFNMQDTKNSDVVKIGTHSNWAESI----YISN 451 Query: 533 LGPGGLTRE-RAGFEVRDVHPTHYGRVCPIETPE-GPNIGLINSLSVYAQTNEYGF---- 586 G++ E R +H + + ++TP+ G GL+ L + + Y Sbjct: 452 AVERGVSIELTKSLTQRKLHASSINVLDMMDTPDHGTKTGLVKRLCISTLISHYPIHIRK 511 Query: 587 -LETPYRKVTDGVVTDEI-------HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRS 638 L R+ + V + ++S I+E +VIA E F++DL + Sbjct: 512 QLFEEVREFIENKVKHTLKEDIISGVFISIIDESEHVIA--RIKNSETESFIKDLKYAKI 569 Query: 639 KGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKP 698 G + + + + + + ++ D + + +R P R + Sbjct: 570 SGLFVK------NDIGIEILKFHELDNNKQIYVPTDRYFQIRINVGNKRATQPVFRVEN- 622 Query: 699 LVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTR 758 G + + + +V +I+V ID+ + Sbjct: 623 ----GELAFNKYPNLHAELKESNSYTDFVTKYYDIIEV-----------IDVGQMIYSNM 667 Query: 759 SNQNTCINQMP--CVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSI 816 N T N + V + L T G + Sbjct: 668 CNTVTEFNSYSLEQRKKYDYVRLPNYLYFSYLTSTGCM---------------------- 705 Query: 817 LVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAE 876 + + + D N + + + I + Sbjct: 706 ---YDIGKMTGVRGTFGTAQSKHIITGPPDNVMNKYDTCNYLAYPIERPSITNIPMEISG 762 Query: 877 VTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTR 936 + I +L F +V+D + ++ ++ V Sbjct: 763 IARNSI---------------GTHVLVGFFSF-NYNVEDGVIVNKESINRGLLSVISLMS 806 Query: 937 DGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDR 996 E + + + + A I VLV G L Sbjct: 807 VKNELSDTQINNNNPSAEN----SNNNYSKISATGLPSIGTVLVQGDALYRCLKP----- 857 Query: 997 WLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAV 1056 +++ + +E ++ + + + D L L+ Sbjct: 858 ----KFKNDDDNRYIFDQSETLSNTYPAVVERTRKQGTDLIKIDML-----------LSS 902 Query: 1057 KRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETH 1116 RR+ GDK+A K +SKI EDMPY+ENG DI+ N + SR + E Sbjct: 903 YRRLSVGDKIAKSV-QKVTVSKIMEEEDMPYNENGERPDIIFNSPSIISRKTLPLYDEVS 961 Query: 1117 LGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENL 1176 L F + Y+ DV + + Sbjct: 962 L-----------------------CNMFSKIPYNDKCDVEYINYPIYTDKSPLDKYNFIK 998 Query: 1177 RKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQF-------ERPVTVGY 1229 ++ I V D E I + LY T + E +G Sbjct: 999 KELKKIYNNVTDEELENII-----------YCRQTLYHPYTKKPMTIKEGDKETKSFMGP 1047 Query: 1230 MYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE 1289 M +L+ + DK+ R+ G Q P G K G + GEME G+ Y + E Sbjct: 1048 MLFCRLSQMSADKISVRNRGRLDKYMQAPSGKKKGG-GIKIGEMESDVFATNGSVYAIHE 1106 Query: 1290 MLTVKSD--------DVNGRTKM-----------------YKNIVDGNHQMEPGMPESFN 1324 + +SD + G + +N+ ++ + + Sbjct: 1107 L---QSDPDEFYLPAHICGNCGIFATYEENIEVKRWKCLQCENLGLSPEIIKMRLTYATK 1163 Query: 1325 VLLKEIRSLGINI 1337 + + + + GI++ Sbjct: 1164 IFITLLNARGISL 1176 >UniRef50_C7DHC6 RNA polymerase beta subunit n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHC6_9EURY Length = 486 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 74/489 (15%), Positives = 159/489 (32%), Gaps = 66/489 (13%) Query: 130 MTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR------IIPYRGSW 183 + F+ G R++ +Q P V + K + + + I+P+ Sbjct: 22 IDSYNRFISVGINRIVENQSIIEPEVSDFAIKLERIRLEQPVVIESDSSTRMIMPHEAQV 81 Query: 184 LDFEFDPKDNLFVRID-------------RRRKLPATIILRALNYTTEQILDLFFEKVIF 230 +F + + ++P + L E Sbjct: 82 RNFTYSAPMYISYTPLISGIAKADSSGDAYVGEMPVMVRSNLCYTKNMSPQQLIEEGEDP 141 Query: 231 EIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDV--KLIEVP 288 + F I+ +V V + + EK++ K+ Sbjct: 142 D----------------DPGGYFIIKGTERVLVGIEDLAPNKMMTTKEKNETVTKVFSTT 185 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 + + A + +D T + + +L L + ++ + ++ + ++ Sbjct: 186 LNFRAKCTITRDEYGIFTIMFPTLSKELNLVMVLRALGMQSKEMLDLITNREVKNDFLLN 245 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 L A+ E+ ++ P + T + + + D Y L +G Sbjct: 246 IELSKAKDLSSAEAMSELGKITAPNQAQTYQEKRAEMQ-----LDTYILPHLG------- 293 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGL 468 S ++ + ++ + + DD DH N+R++ G++ E F Sbjct: 294 ----TTPQSRADKALYLVRMAERTSMVAYNYVKSDDKDHYANKRVKLAGDLMEELFNTAF 349 Query: 469 VRVERAVKERLSLG--DLDTLMPQDMINAKPISAAVKEFFGSSQL-------SQFMDQNN 519 + +K + L + IN ++ + + SQ +D+ N Sbjct: 350 KAFVKDIKYHVERTTARGRKLAVKTNINPDTLTEKILYSMSTGSWPAGQTGVSQVLDRFN 409 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYA 579 S + H RR+ + L + F+ RDVH TH G++C ETPEG +GL L++ + Sbjct: 410 FASSVAHIRRVKS----PLAKRHPHFKARDVHGTHLGKICISETPEGIEVGLTRYLALMS 465 Query: 580 QTNEYGFLE 588 + + Sbjct: 466 KVTVGADHQ 474 Score = 88.8 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 88/254 (34%), Gaps = 49/254 (19%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 ++ + Q+DS+ +FI G+ + I+ + ++ Sbjct: 3 DSHEIIQAYIESTSIAQQQIDSYNRFI------SVGINRIVENQSIIEPEVSDFAIKLER 56 Query: 73 YRLGEP----------VFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 RL +P + E Q+R TYSAP+ + G K + Sbjct: 57 IRLEQPVVIESDSSTRMIMPHEAQVRNFTYSAPMYIS------YTPLISGIAKADSSGDA 110 Query: 123 YMGEIPLMT------------------------DNGTFVINGTERVIVSQLHRSPGVFFD 158 Y+GE+P+M G F+I GTERV+V +P Sbjct: 111 YVGEMPVMVRSNLCYTKNMSPQQLIEEGEDPDDPGGYFIIKGTERVLVGIEDLAPNKMMT 170 Query: 159 SDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE 218 + K K + KV + + E+ +F + + L + LRAL ++ Sbjct: 171 T-KEKNETVTKVFSTTLNFRAKCTITRDEYGIFTIMFPTLSKELNL-VMV-LRALGMQSK 227 Query: 219 QILDLFFEKVIFEI 232 ++LDL + + Sbjct: 228 EMLDLITNREVKND 241 >UniRef50_Q0PPY8 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Echinoplaca strigulacea RepID=Q0PPY8_9LECA Length = 725 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 85/255 (33%), Gaps = 25/255 (9%) Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTLMPQDMINAKPISA 500 DD DH G +R+ G + FR ++ + L +L Q +I ++ Sbjct: 1 DDSDHFGKKRLDLAGPLLAGLFRTLYYKLTKDANRALQKAVESGKSLELQSIIKPGILTN 60 Query: 501 AVKEFFGSSQLS-------------QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV 547 +K + S Q +++ S ++H RR + L R+ + Sbjct: 61 GLKYSLATGNWSEQKKAAQGKAGVSQVLNRYTYASTLSHLRRTNT----PLGRDGKIAKP 116 Query: 548 RDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLS 607 R +H TH+G VCP ETPEG GL+ +L++ G P + + Sbjct: 117 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTV-GSPGWPVIDFLQSRNMELLEEYE 175 Query: 608 AIEEGNYVIAQANSNLDEEG----HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSV 663 + N H ++ R S V + ++ + Sbjct: 176 PSRNPHATKVFVNGTWVGVHPSPAHLHSQILALRRNNTISHEVSI-VRDIREREFKIFTD 234 Query: 664 GASLIPFLEHDDANR 678 + L D ++ Sbjct: 235 AGRVSRPLFVVDNDK 249 >UniRef50_D2EG09 RNA polymerase beta subunit n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EG09_9EURY Length = 492 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 83/506 (16%), Positives = 156/506 (30%), Gaps = 77/506 (15%) Query: 134 GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII-----------PYRGS 182 F+ NG +++I ++ P + K+ I P Sbjct: 28 EYFIGNGLKKIIDTEGLIEPVIKPAGVDDFKIKINKITIGKPDIIEADSIVRLINPMEAR 87 Query: 183 WLDFEFDPKDNLFVRIDRRRK-----------LPATIILRALNYTTEQILDLFFEKVIFE 231 D +D L V K +P + + N +L K Sbjct: 88 IRDLTYDAPLMLSVSYLANGKEILEEEVFIGRMPIIVKSKYCNLYGLSPSELTEAKEDPT 147 Query: 232 IRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARH-IRQLEKDDVKLIEVPVE 290 F I ++ + I + ++ K Sbjct: 148 ----------------DPGGYFIINGTERIIITTEDLAPNNILISKDNQEGFKFSAKIFA 191 Query: 291 YIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE- 349 V S+ L + ++ + G + I Sbjct: 192 DADSIKVPHTLQMSSSNLLYITFGKLKRVPIVTLIKALGITNENEIIKKIGKDDDDIINT 251 Query: 350 ---TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFN 406 L T+ AL I +M+ T+E AE ++L F Sbjct: 252 IDMNLIAFNTSSENEALDSIGKMLHS--IHTKETAELNIDSLLFP--------------- 294 Query: 407 RSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRV 466 + S + + ++ V LI G+ D DH N+R+ + + FR Sbjct: 295 ---FLGRDKDSRKIKAEYVMYVSNLLIKSAL-AGKEVDKDHYSNKRLHAESYNLDMLFRF 350 Query: 467 GLVRVERAVKERLSLGDLDTL--MPQDMINAKPISAAVKEFFGSSQL-------SQFMDQ 517 ++ K G P+ + + ++A ++ + Q +Q +D+ Sbjct: 351 IFKQILNDAKYNFERGIRKDKVPDPKYIFTSDQLTARLRSALATGQWVGGRVGITQHLDR 410 Query: 518 NNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577 + S ++H R++ +L LT R + RD+H T +GR C +ETPEGP IGL +L++ Sbjct: 411 RSFPSTVSHLRKVESL----LTSNRENYRARDLHGTQFGRFCAVETPEGPKIGLTKNLAM 466 Query: 578 YAQTNEYGFLETPYRKVTDGVVTDEI 603 + ++ G + + +I Sbjct: 467 LSMMSKEGVDTETVKNLLKNYGVKKI 492 Score = 88.0 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 50/331 (15%), Positives = 117/331 (35%), Gaps = 59/331 (17%) Query: 17 KRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLG 76 LD L + + SF+ FI + E V + + +++ +G Sbjct: 9 LLKSALDSTALAAHHISSFEYFIGNGLKKIIDTEGLIEPVIK-PAGVDDFKIKINKITIG 67 Query: 77 EPVF----------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 +P + E +IR +TY APL + + + K+I E+EV++G Sbjct: 68 KPDIIEADSIVRLINPMEARIRDLTYDAPLMLSVSYLANG--------KEILEEEVFIGR 119 Query: 127 IPLMT------------------------DNGTFVINGTERVIVSQLHRSP-GVFFDSDK 161 +P++ G F+INGTER+I++ +P + D Sbjct: 120 MPIIVKSKYCNLYGLSPSELTEAKEDPTDPGGYFIINGTERIIITTEDLAPNNILISKDN 179 Query: 162 GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQIL 221 + ++ + + L++ + +++P +++AL T Sbjct: 180 QEGFKFSAKIFADADSIK--VPHTLQMSSSNLLYITFGKLKRVPIVTLIKALGITN---- 233 Query: 222 DLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD 281 I+ + + + +F+ + + G+ + + H ++ + + Sbjct: 234 ------ENEIIKKIGKDDDDIINTIDMNLIAFNTSSENEALDSIGKMLHSIHTKETAELN 287 Query: 282 VKLIEVP---VEYIAGKVVAKDYIDESTGEL 309 + + P + + K+ A+ + S + Sbjct: 288 IDSLLFPFLGRDKDSRKIKAEYVMYVSNLLI 318 >UniRef50_Q74NB5 NEQ173 n=1 Tax=Nanoarchaeum equitans RepID=Q74NB5_NANEQ Length = 493 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 78/468 (16%), Positives = 162/468 (34%), Gaps = 59/468 (12%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 + + + ++ ++ Y+A + + D E K++ +V+I Sbjct: 69 KAQIIDIQGPRIIYPYE-----ARLRQLTYSAPVRVRFQYYEDGEL--KEDRWVKIGE-- 119 Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVY 262 LP + + N +L F I +V Sbjct: 120 -LPVMVRSKICNTYGLSEEELLKVYEDP----------------LDPGGYFIINGVDRVI 162 Query: 263 VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLL 322 V + + ++++ + + + G+ + + G L + ++ L+ Sbjct: 163 VMEENLAPNQFYV--QENNGEYVGKMLSVRGGRKIPITIELKKDGILYLTFSRLENVPLI 220 Query: 323 AKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAE 382 + G K E +I L D S + + ++ PG T+E + Sbjct: 221 PFVKVLGIKDNEIAQYLGNYEETFI--NLLEFADQDYESII--LGKIKIPG--LTKEEKQ 274 Query: 383 SLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEV 442 + +E L+ D Y L +G L +++ KL+ + +G+ + Sbjct: 275 AKYERLYEIVDNYLLPHIGY-----------DPSLRRLKAINLLKYASKLLKLAHGEIKE 323 Query: 443 DDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTL--MPQDMINAKPISA 500 DD DH N+RI G++ FR + +K ++ ++ + Sbjct: 324 DDRDHYMNKRILMAGDLVGELFRSAFYAQLQNLKYIYQRNAKRKKITSIEEFVSVDVFNQ 383 Query: 501 AVKEFFGSSQL-------SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPT 553 ++ F + Q SQ +D+ N L+ + R++ L E E R H T Sbjct: 384 RIETAFATGQWVGGKTGISQLLDRTNYLATVWALNRVTT----SLEEENEMIEARRTHGT 439 Query: 554 HYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD 601 H+GR+ PI+TPE +IGL +L++ ++ E + + Sbjct: 440 HWGRLDPIDTPEDKSIGLRKALTLLSKITVD-IEEEKILPIIKELGAK 486 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 71/434 (16%), Positives = 135/434 (31%), Gaps = 87/434 (20%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ 60 M Y+ K I+K + + P + QLDSF I+ + ++ + F + Sbjct: 1 MEYNVYSKLLIKKYYEEHP-------ITRPQLDSFNWLIDHGLKRI--IQEVGKVEFEVT 51 Query: 61 SYS-GNSELQYVSYRLGE--------PVF-DVQECQIRGVTYSAPLRVKLRLVIYEREAP 110 + L V +G+ P E ++R +TYSAP+RV+ + Sbjct: 52 PEGVKEAYLVAVDIEVGKAQIIDIQGPRIIYPYEARLRQLTYSAPVRVRFQYYEDGELKE 111 Query: 111 EGTVKDIKEQEVYMGEIPLMT------------------------DNGTFVINGTERVIV 146 + V +GE+P+M G F+ING +RVIV Sbjct: 112 DR--------WVKIGELPVMVRSKICNTYGLSEEELLKVYEDPLDPGGYFIINGVDRVIV 163 Query: 147 SQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSW---LDFEFDPKDNLFVRIDRRRK 203 + + +P F+ + Y +++ RG + E L++ R Sbjct: 164 MEENLAPNQFYVQE-------NNGEYVGKMLSVRGGRKIPITIELKKDGILYLTFSRLEN 216 Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYV 263 +P ++ L +I I + + + G Sbjct: 217 VPLIPFVKVLGIKDNEIAQYLGNYEETFINLLEFADQDYESIILG--------------- 261 Query: 264 EKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLA 323 +I + + +L E+ Y+ + + + A N+ L Sbjct: 262 --KIKIPGLTKEEKQAKYERLYEIVDNYLLP-----HIGYDPSLRRLKAINLLKYASKLL 314 Query: 324 KLSQSGHKRI--ETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAA 381 KL+ K + + + L +L L IY+ + T + Sbjct: 315 KLAHGEIKEDDRDHYMNKRILMAGDLVGELFRSAFYAQLQNLKYIYQRNAKRKKIT--SI 372 Query: 382 ESLFENLFFSEDRY 395 E F++ Sbjct: 373 EEFVSVDVFNQRIE 386 >UniRef50_C0GNU6 RNA polymerase Rpb2 domain 6 n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNU6_9DELT Length = 1518 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 90/436 (20%), Positives = 151/436 (34%), Gaps = 94/436 (21%) Query: 891 GETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE 950 + + LL A + +D G VI + + K Sbjct: 357 HDLDMDIGRNLLVAYLPWYGFNYED----------GIVISRSAAEKF-LSVKKHKFGPYF 405 Query: 951 MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQ 1010 + + + L+ + + +G V A +++Q Sbjct: 406 CPGNYRPANPDSKWRKLDRDGLAPQGQEVKSGDVLAAF-----YPVRWNHDSRSKKRQIV 460 Query: 1011 LEQLAEQYDEL--KHEFEKKLEAKRRKITQGDDLAPGVLKI--VKVYLAVKRRIQPGDKM 1066 + LAE H K + + + D P + V + + R ++PGDK+ Sbjct: 461 VNTLAEPLLVRVPDHVQGKLVRFEVVCLETSDLPLPRHITRMAVHMEIEESRPLEPGDKI 520 Query: 1067 AGRHGNKGVISKINPIEDMPYDENGT--------------------PVDIVLNPLGVPSR 1106 GRHGNKGVIS+I P +MPY + V+++LNPLGV R Sbjct: 521 MGRHGNKGVISRILPDREMPYFLDSMHGITDLRSSSHFHGEEQAHTHVEVILNPLGVIGR 580 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN GQ+LE H G+A + I +++ Sbjct: 581 MNTGQLLECHTGLAMRCIPERMEF------------------------------------ 604 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIK-ELLKLGDLPTSGQIRLY---DGRTGEQFE 1222 + F ++ +LL + +G+ RL+ + Q Sbjct: 605 -------------YQNSGMPFSSVDIESLRQDLLSTKIVDETGKARLFWRDEAGNHVQTG 651 Query: 1223 RPVTVGYMYMLKLNHLVDDKMHA-RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1281 +G Y++KL+H+ DK H ++T QP+ G+++ GG R GEME W + Sbjct: 652 HASMIGVQYLMKLDHMARDKFHVCGKKPPRCMITNQPVKGRSRGGGLRLGEMENWCIIER 711 Query: 1282 GAAYTLQEMLTVKSDD 1297 A + E+L D Sbjct: 712 QAWDVIDELLQKSEPD 727 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 111/343 (32%), Gaps = 72/343 (20%) Query: 464 FRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS--SQLSQF--MDQNN 519 R+ +K+ L + + + + F+ + ++ F D N Sbjct: 149 LSSLTHRLRYFLKKNLEKWKSRAVTNSYAASVLLAGSLDEAFYSTFYRRVDHFPLADTTN 208 Query: 520 PLSEITHKRRISALGPGGLTRERAGFEV----RDVHPTHYGRVCPIETPEGPNIGLINSL 575 L+E R++SA + G + R++ P H G +CP+ETPE +IGL+ L Sbjct: 209 KLAETAQGRQVSAKSLRCHRKTMIGSKPEDNVRNLLPEHTGMICPVETPESESIGLVMHL 268 Query: 576 SVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVT 635 + A+ + + E + Sbjct: 269 ARKARPELWSQD-------------AAFNENDQRSEEGILKTPD---------------- 299 Query: 636 CRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRA 695 + A ++P+++H D RA+MGA +QA+ + Sbjct: 300 ---------------------PDNFLGYSACMVPYIQHTDPTRAMMGAKNMKQALSLTQG 338 Query: 696 DKPLVGTGMERAV--------AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE--MYPGE 745 + PL+ TG E V +D G + + IVI + E + + Sbjct: 339 EAPLIRTGHEEEVFGRGEHDLDMDIGRNLLVAYLPWYGFNYEDGIVISRSAAEKFLSVKK 398 Query: 746 AGIDIYNLTKYTRSNQN----TCINQMPCVSLGEPVERGDVLA 784 Y R +++ G+ V+ GDVLA Sbjct: 399 HKFGPYFCPGNYRPANPDSKWRKLDRDGLAPQGQEVKSGDVLA 441 Score = 89.5 bits (220), Expect = 8e-16, Method: Composition-based stats. Identities = 53/377 (14%), Positives = 120/377 (31%), Gaps = 46/377 (12%) Query: 665 ASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTG----MERAVAVDSGVTAVAKR 720 +I +E ++ + ++ R+A P L + E + + Sbjct: 248 TGMICPVETPESESIGLVMHLARKARPELWSQDAAFNENDQRSEEGILKTPDPDNFLGYS 307 Query: 721 GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG 780 +V Y+ + + + + + P + G E Sbjct: 308 ACMVPYIQHTDPTRAMMGAKNMKQALSLT---------------QGEAPLIRTGHEEEVF 352 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 G ++ +G+N+ VA++PW G+N+ED I++S ++ Sbjct: 353 -----GRGEHDLDMDIGRNLLVAYLPWYGFNYEDGIVISRSAAEKFL-----------SV 396 Query: 841 RDTKLGPEEIT-ADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 + K GP P ++ KLD G+ G EV GD+L + ++ Sbjct: 397 KKHKFGPYFCPGNYRPANPDSKWRKLDRDGLAPQGQEVKSGDVLAAFYPVRWNHDSRSKK 456 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDK---RALEIEEMQLKQA 956 + + + V+ VP+ V G ++ +V + + M+++++ Sbjct: 457 RQIVVNTLAEPLLVR-----VPDHVQGKLVRFEVVCLETSDLPLPRHITRMAVHMEIEES 511 Query: 957 KKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLD--KLPRDRWLELGLTDEEKQNQLEQL 1014 + + + G I +L + + R +E+ +E + Sbjct: 512 RPLEPGDKIMGRHGNKGVISRILPDREMPYFLDSMHGITDLRSSSHFHGEEQAHTHVEVI 571 Query: 1015 AEQYDELKHEFEKKLEA 1031 + +L Sbjct: 572 LNPLGVIGRMNTGQLLE 588 >UniRef50_D1GLJ0 RNA polymerase beta subunit (Fragment) n=66 Tax=Rhodospirillales RepID=D1GLJ0_GLUDI Length = 325 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 141/327 (43%), Positives = 190/327 (58%), Gaps = 29/327 (8%) Query: 136 FVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLF 195 F+INGTERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++ Sbjct: 1 FIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKFLFAARVIPYRGSWLDFEFDSKDLIY 60 Query: 196 VRIDRRRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIF 230 VRIDR+RKLP T +L AL ++IL F+ +V+F Sbjct: 61 VRIDRKRKLPVTTLLYALEGASSAAARAAKVAEGGDVDALEIRGMDADEILGYFYNQVVF 120 Query: 231 EIRDNKLQMELVPERLRGETA--SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVP 288 E RG +G+V E ++TAR +R++ + +++ P Sbjct: 121 TKGPKGWARPFDAESFRGLKLLEPLVDAQSGEVVAEADAKLTARMVRKIAETTKEVLVGP 180 Query: 289 VEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 I G+ VA D ++ TGE+ A EL+ L L ++G ++ TL D +GP+I Sbjct: 181 AGLI-GRYVAHDLVNMETGEIYAEAGEELTEARLEALEEAGVDQLPTL-AVDASNGPWIR 238 Query: 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRS 408 TL VD R AL +IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR+K N Sbjct: 239 NTLTVDKNTSREDALTDIYRVMRPGEPPTPETAEAMFSGLFFDADRYDLSAVGRVKMNMR 298 Query: 409 LLREEIEGSGILSKDDIIDVMKKLIDI 435 L + + +L K+DI+ +K + ++ Sbjct: 299 LGLDAPDTIRVLRKEDILRTVKIMCEL 325 >UniRef50_A7AXE5 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AXE5_BABBO Length = 971 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 119/659 (18%), Positives = 229/659 (34%), Gaps = 30/659 (4%) Query: 203 KLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF-DIEANGKV 261 K TI +NY I LFF+ V ++ + K V + + I++ K+ Sbjct: 5 KDYNTIYKTYINYILNNIYTLFFDVVKYQKKLLKRNNYRVKVQNIKLYFNLLSIKSIDKI 64 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDY---IDESTGELICAANMELS 318 ++ + +K I +D + LI N Sbjct: 65 NYNSYYLLSYSTMYYSFNVPLKFIFNDQSKSININYNILNIPKVDATGEILINGFNRTPV 124 Query: 319 LDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTR 378 L L + + + + + L N L + + N + + + E Sbjct: 125 LHLKSIIKHTSTVQKKRLIKNYLINLTGFNYMHVSVSQNKYVYVKLNDLSKLDLSEVIKF 184 Query: 379 EAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE-GSGILSKDDIIDVMKKLIDIRN 437 + F L E ++ +N +++ + S DII V+ K I+ + Sbjct: 185 NSIHKNFIKLTIFEIIEAINDKFYNDYNDNVINSFFTAYNKNCSYADIISVINKFINAVH 244 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKP 497 K + D N+ + S+ + N + L ++ L LD+ I Sbjct: 245 KKITFINSDSFINKNVNSICDNMFNLIKKSLSTYHFTDPKKHILHVLDSKTKFSNI---- 300 Query: 498 ISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEV---RDVHPTH 554 +E F + + +Q N LS + +K +++ G + R V + Sbjct: 301 --PLFRENFLLNPSLHYTNQLNLLSCVQNKFKLNIFGYSTSSTSTTFAIPKYLRQVQYFY 358 Query: 555 YGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR---KVTDGVVTDEIHYLSAIEE 611 + + T +G G++++++ + L+T K + + D+ Sbjct: 359 LNFINILYTVDGEKCGILSTITTNT-IEQNKKLKTVIINKQKFLNNIYLDQFS----KNL 413 Query: 612 GNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLF-SRDQVDYMDVSTQQVVSVGASLIPF 670 + I N+ L + +F + V GE + ++ + ++ LIPF Sbjct: 414 NSITINNYNNLLKKSYNFKINHVEVIENGEFKIVKLDKHSSNSSLTFYNIFNITELLIPF 473 Query: 671 LEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDAS 730 L ++D R+LMG+ M QAVP + ++ V T + + S ++ G++ Sbjct: 474 LLNNDMCRSLMGSKMHTQAVPLIHSNPQYVYTKYNQITNLISNKCIISSTSGIIVLSTNY 533 Query: 731 RIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTD 790 +I I + + Y L+ Y + N P V GE G +LA Sbjct: 534 KITILDDNNRYVS-------YYLSPYNIHDYNYYTRYRPVVWEGEKSNIGTILAIPSDAA 586 Query: 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEE 849 E LG N V + + GY ED+I++++ V D T++ K E Sbjct: 587 NCEFTLGFNNFVNYSFYYGYEHEDAIVLNKNVAYNDMLTSLEFDIDDIDLSFKKKKYIE 645 Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 96/536 (17%), Positives = 191/536 (35%), Gaps = 71/536 (13%) Query: 807 WNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLD 866 + YN +++ ++ ++ + D N+ + Sbjct: 504 YTKYNQITNLISNKCIISSTSGIIVLSTNYKITILDDNNRYVSYYLSPYNIHDYNY-YTR 562 Query: 867 ESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSG 926 +V+ G + G IL + + T + +D+ + N Sbjct: 563 YRPVVWEGEKSNIGTIL-AIPSDAANCEFTLGFNNFVNYSFYYGYEHEDAIVLNKN---- 617 Query: 927 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEA 986 V + T + D L ++ KK + L + +F I ++ + Sbjct: 618 -VAYNDMLTSLEFDIDDIDLSFKK------KKYIETILIDNKKKIFKIIIRIISNLKKQK 670 Query: 987 EKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGV 1046 + K R + + L ++K + + + G +L Sbjct: 671 REALKRAVRRRKRRRKIKKIVIKSKKCLYSDQTDIKKLVKYECTQYSNFVRIGSNLNYAN 730 Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSR 1106 K++L I GDK+ GRHGNKG ISKI I + PY +I+ +P+G SR Sbjct: 731 F---KLFLVSINNINVGDKLCGRHGNKGTISKIIEIPESPYTSEDKLPNIITSPIGAASR 787 Query: 1107 MNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD 1166 MN+GQ +E ++G +I + + +++ + + K+ S + Sbjct: 788 MNVGQFIEGYIGNTCDIDNVRIKSPINLHSSDMYSSLYVKSVSNKINNRYVKLKSSQNAV 847 Query: 1167 EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVT 1226 D +TG + + Sbjct: 848 S-------------------------------------------VFRDFKTGYKLKGFTH 864 Query: 1227 VGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1286 +Y KL H K R + S + Q + G+++ Q+FGEMEVW+LEA+GA+Y Sbjct: 865 HVILYFFKLMHTSKSKFRYRCSSSKLV---QYVHGESKE--QKFGEMEVWSLEAHGASYN 919 Query: 1287 LQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 L+EM +K++ K+ + + + ++F L+ E++++ ++I+ ++ Sbjct: 920 LKEMSLLKTNIKFVTEKIMYDYSN-------LLSKTFTDLIAELKAVLVSIKFNNK 968 >UniRef50_B2X2B9 DNA-directed RNA polymerase n=3 Tax=cellular organisms RepID=B2X2B9_CHLMO Length = 1661 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 92/215 (42%), Positives = 131/215 (60%) Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 + ++I + + Y+L KY RSNQ+TC+ P V G+ VE GD+ Sbjct: 235 KTNKLKRTKIKVNSYKIIENCDNYLSMEYSLEKYHRSNQDTCLVHKPAVVEGQWVESGDL 294 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 LAD ++ GELALGQN+ + +MPW GYNFED+IL+SER+V +D +T+IHI+ + Sbjct: 295 LADCSASVGGELALGQNILIGYMPWEGYNFEDAILISERLVYDDLYTSIHIERYEVNIEE 354 Query: 843 TKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL 902 +KLG ++IT +IP V +L L+ GI+ IG+ V GDILVGKVTP + + +KLL Sbjct: 355 SKLGMDKITREIPEVDSDSLKNLNSLGIIKIGSWVQEGDILVGKVTPVNKKNQSNYQKLL 414 Query: 903 RAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 937 I + S V+DSSLR P G+ VI +QVF + Sbjct: 415 YLILDKTVSPVRDSSLRAPKGIKAKVIGLQVFKNN 449 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 91/322 (28%), Positives = 141/322 (43%), Gaps = 44/322 (13%) Query: 934 FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLP 993 + G+ + L ++ ++ + + + I + ++ + Sbjct: 600 LNKVGLAPSNKRLTWKKADNQKLNTEETNSINISINTKNNYHKSEGYINDPLTDGSLINE 659 Query: 994 RDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVY 1053 + ++ L + A Q + K + + ++VY Sbjct: 660 TKKSHRSASVLDKGAFSLGEKALQRSSTGQNLKTKKTGMQALYLKSTSSVSS----IQVY 715 Query: 1054 LAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQIL 1113 LA +RR+Q GDKMAGRHGNKG+IS+I PIED+P+ +GTP+D+VLNPLGVPSRMN+GQI Sbjct: 716 LAERRRVQVGDKMAGRHGNKGIISEILPIEDLPFLPDGTPLDMVLNPLGVPSRMNVGQIY 775 Query: 1114 ETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLA 1173 E LG+A K +G+ + GA+ + S + V Sbjct: 776 ECLLGLAGKHLGENYKVFPFDE--------------IYGAEASRSFVYSKLYNASVKTGK 821 Query: 1174 ENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYML 1233 L + G+I LYDGRTGE F + +TVGY Y+L Sbjct: 822 T-------------------------WLFNPNLPGKIGLYDGRTGESFHQAITVGYAYIL 856 Query: 1234 KLNHLVDDKMHARSTGSYSLVT 1255 +L H+VDDKMH T + ++T Sbjct: 857 RLVHMVDDKMHCL-TPDHDVLT 877 Score = 146 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 55/95 (57%), Positives = 73/95 (76%), Gaps = 1/95 (1%) Query: 1245 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM 1304 +RSTG YSLVTQQPL G+++ GGQR GEMEVWALE YGAA+TL EMLT+KSDD++GR + Sbjct: 1563 SRSTGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGYGAAFTLLEMLTIKSDDMSGRMTL 1622 Query: 1305 YKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL 1339 + N++ G PESF VL+ E+++L ++I L Sbjct: 1623 WSNLILNKEIS-IGTPESFKVLICELQALCLDIGL 1656 >UniRef50_C6H0E8 RNA polymerase subunit B (Fragment) n=1 Tax=Acinetobacter sp. G13 RepID=C6H0E8_9GAMM Length = 287 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 128/291 (43%), Positives = 176/291 (60%), Gaps = 4/291 (1%) Query: 942 DKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG 1001 ++ L+ E ++A ++ L + + + L L LE+ Sbjct: 1 YRKDLKEEFKIFEEAARERVIRLLNGQESNGG--GTTKRGDKLSEDVLSGLELVDLLEIQ 58 Query: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061 DE +L Q+ E E ++K K+RK++ GD+L GVLK+VKVYLAVKRRIQ Sbjct: 59 PVDEAIAERLTQIQVFLKEKSFEIDEKFAEKKRKLSTGDELTTGVLKVVKVYLAVKRRIQ 118 Query: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121 PG PVDIVLNPLGVPSRMN+GQILETHLGMAA Sbjct: 119 PGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVDIVLNPLGVPSRMNVGQILETHLGMAA 178 Query: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181 KG+GD+I+ M+K+Q+ V +LR+F+ + Y+ + DL + +DEE+++L+ NLR G+P Sbjct: 179 KGLGDQIDKMMKEQRTVLELRDFLDKIYNKVGGEQ--EDLDSLTDEEILKLSGNLRAGVP 236 Query: 1182 IATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM 1232 +ATPVFDGA+E +IKELL+L L ++GQ LYDGRTGE+F+RPVTVGYMYM Sbjct: 237 LATPVFDGAEEGQIKELLQLAGLSSTGQTVLYDGRTGERFDRPVTVGYMYM 287 >UniRef50_Q06SF4 DNA-directed RNA polymerase subunit beta C-terminal section n=2 Tax=Chlorophyceae RepID=RPOB2_STIHE Length = 1080 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 84/288 (29%), Positives = 128/288 (44%), Gaps = 43/288 (14%) Query: 973 SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAK 1032 R + + + + W ++G ++K ++ + K Sbjct: 342 ERNFQKMSPNQSKQNWVKISIKKEWQKVGSFGKKKASKGKISFFPSFPQASLVGKASFFS 401 Query: 1033 RRKITQGDD----LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD 1088 + + D L + V +YLA KR++Q GDKMAGRHGNKG+IS+I P +DMPY Sbjct: 402 PSRFEKKRDASNFLKSSCISSVHIYLAEKRKVQVGDKMAGRHGNKGIISQILPRQDMPYL 461 Query: 1089 ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRA 1148 +GTP+D+ LNPLGVPSRMN+GQI E LG+A K +G++ + Sbjct: 462 PDGTPIDMALNPLGVPSRMNVGQIYECLLGLAGKHLGEQYRIQPFDEA------------ 509 Query: 1149 YDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSG 1208 G + + S + L G Sbjct: 510 --FGPEASRSFVFSKLYSAKTKTGQS-------------------------WLFQPTNPG 542 Query: 1209 QIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ 1256 +++L+DGRTG F++ +T GY YM+KL HLVD+K+H + L T+ Sbjct: 543 KLKLFDGRTGNCFDQAITTGYSYMIKLVHLVDEKIHCLTVDHEVLTTK 590 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 82/202 (40%), Positives = 121/202 (59%), Gaps = 3/202 (1%) Query: 750 IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNG 809 Y+L Y RSNQ+T + P V GE V+ GD+L+D S+ GE ++GQN+ +A++PW G Sbjct: 13 EYSLQTYQRSNQDTSMLHRPVVKEGEWVQAGDLLSDCASSIGGEFSIGQNILIAYLPWEG 72 Query: 810 YNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADI-PNVGEAALSKLDES 868 YN+ED+IL+SER+V +D +T+IHI+ + G E+IT DI L+ LD++ Sbjct: 73 YNYEDAILISERLVYDDLYTSIHIERYDISTEKNPYGIEKITKDIVLLKDTTELNHLDKN 132 Query: 869 GIVYIGAEVTGGDILVGKVTPK-GETQLTPEEKLLRAIFGEK-ASDVKDSSLRVPNGVSG 926 GI +GA + GDILVGK+TP + ++ +L I G+K ++DSSLRVP G+ Sbjct: 133 GIAQLGAWLKEGDILVGKITPTESKKEVARYVQLYNDILGKKINYAIRDSSLRVPRGLEA 192 Query: 927 TVIDVQVFTRDGVEKDKRALEI 948 VI V+ F E +I Sbjct: 193 KVIRVKTFPERKNETKNWENKI 214 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 55/143 (38%), Positives = 85/143 (59%), Gaps = 11/143 (7%) Query: 1202 GDLPTSGQIRLYDGRTGEQFERPVTV----GYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1257 + G+ + ++ V ++ ++ N L ++RS+G YSL+TQQ Sbjct: 928 HGYHSKGKEEV------LPYQGAVYCLSVPNEIFYVRRNGLSVWTGNSRSSGPYSLITQQ 981 Query: 1258 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEP 1317 PL G+++ GGQR GEMEVWA+EAYGAA+TL E+LT+KSDDV GR ++ V + Sbjct: 982 PLKGRSKHGGQRLGEMEVWAIEAYGAAFTLLELLTIKSDDVTGRLTIWDY-VLYKKPLYI 1040 Query: 1318 GMPESFNVLLKEIRSLGINIELE 1340 G P SF VL+ E+++L ++I + Sbjct: 1041 GTPASFKVLICELQALCLDIGIY 1063 >UniRef50_B7RK98 DNA-directed RNA polymerase, beta subunit n=1 Tax=Roseobacter sp. GAI101 RepID=B7RK98_9RHOB Length = 309 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 112/220 (50%), Positives = 153/220 (69%), Gaps = 4/220 (1%) Query: 105 YEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKT 164 + RE VKDIKEQ+V+MG++PLMT NGTFV+NGTERVIVSQ+HRSPGVFFD DKGKT Sbjct: 46 FTREVRRVAVKDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKT 105 Query: 165 HSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLF 224 HSSGK+L+ RIIPYRGSWLDFEFD KD +F RIDRRRKLP T +L AL E I+D + Sbjct: 106 HSSGKLLFACRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAY 165 Query: 225 FEKVIFEIRDNKLQM-ELVPERLRGETASF--DIEANGKVYVEKGRRITAR-HIRQLEKD 280 ++ V + ++ + + P+R+RG ++ A G+V EKG+++T R + +++ Sbjct: 166 YDTVTYTLKAGEGWVAPFYPDRVRGTRPTYDLIDAATGEVLFEKGKKVTPRAVKQLVDEG 225 Query: 281 DVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD 320 V + +P E+I GK A+D I+E TG + E++L+ Sbjct: 226 KVSELVLPFEHIVGKFAARDIINEETGAIYVEPGDEMTLE 265 >UniRef50_D1GLP0 RNA polymerase beta subunit (Fragment) n=1 Tax=Neoasaia chiangmaiensis RepID=D1GLP0_9PROT Length = 287 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 131/289 (45%), Positives = 168/289 (58%), Gaps = 29/289 (10%) Query: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR 200 TERVIVSQ+HRSPGVFFD DKGKTHSSGK L+ AR+IPYRGSWLDFEFD KD ++VRIDR Sbjct: 1 TERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAARVIPYRGSWLDFEFDAKDLIYVRIDR 60 Query: 201 RRKLPATIILRAL-------------------------NYTTEQILDLFFEKVIFEIRDN 235 +RKLP T +L AL ++IL F+ +V F Sbjct: 61 KRKLPVTTLLYALEGENSIAARAAKAEEGGDVDAMPIRGMDQDEILGYFYNEVPFTRMPK 120 Query: 236 KLQMELVPERLRGETA--SFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIA 293 PE RG G+V E ++TAR +R++ ++ +++ V + Sbjct: 121 GWARPFDPEAFRGLKLLEPLYDADTGEVVAEADAKLTARAVRKIAEN-TRVVLVGRADLL 179 Query: 294 GKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRV 353 G+ VA D ++E TGE+ A EL+ LA L +G + + + D HGP+I TL V Sbjct: 180 GRFVAHDLVNEHTGEIYAEAGEELTEARLAALEDAGVTELP-MLSVDGQHGPWIRNTLAV 238 Query: 354 DPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGR 402 D R ALV+IYR+MRPGEPPT E AE++F LFF DRYDLSAVGR Sbjct: 239 DKNMSRDDALVDIYRIMRPGEPPTPETAEAMFRGLFFDPDRYDLSAVGR 287 >UniRef50_Q23U98 DNA-directed RNA polymerase, beta subunit family protein n=6 Tax=Tetrahymena thermophila SB210 RepID=Q23U98_TETTH Length = 685 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 84/551 (15%), Positives = 171/551 (31%), Gaps = 94/551 (17%) Query: 808 NGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDE 867 G+ + S++ +Q T I++ E C ++ +A I + ++ Sbjct: 210 EGFEKIQGMYYSQQQIQNK--TKIYLFEW-CDIQEISNKLVSPSAQILEYNNFLRNSINP 266 Query: 868 SGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLL-----RAIFGEKASDVKDSSLRVPN 922 S I Y +I + + + L I G ++ + Sbjct: 267 STIPYPHCNYAPRNIFAFVQMKRSVQKPYSDNDLRSDINQYLILGSAPLVQTMTTNMINT 326 Query: 923 GV--SGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV 980 +GT + + V G +++ + + + +++ + L Sbjct: 327 NEKFNGTNVCIAVLQEHGYQQEDSITISSRLAKSMYLQCKNGDVKNFQHDLNY------- 379 Query: 981 AGGVEAEKLDKLPRDRWLELGLTDEEKQNQL-EQLAEQYDELKHEFEKKLEAKRRKITQG 1039 +KL + + G + + + L ++ + K E + I + Sbjct: 380 ---------EKLDENGLIREGSVVRKGDIVIGKILILNQEDQIIDRSIKFEYEEGIILKV 430 Query: 1040 DDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLN 1099 + + + + + Q GDK A R G KG I I MPY +GTP+DI++N Sbjct: 431 KQINVDGQQKIIIRFIIPLYPQIGDKYAARCGQKGTIGTIRDENQMPYTNDGTPIDIIIN 490 Query: 1100 PLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKV 1159 P +RM IG +E + G +++ + D ++++ Sbjct: 491 PCSFSTRMTIGMNIEQYTSYLVLLTGLFLDSSMFCD----------------KIDRQEEI 534 Query: 1160 DLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGE 1219 + +++ G VF A+E + L E Sbjct: 535 QRNILGQKKIYYPLTGEFIGYAQVGFVFYAAQEQKAFSKLYAVGFN-------------E 581 Query: 1220 QFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE 1279 + V QP G GG R GEME+ Sbjct: 582 AYRNQVF------------------------------QPRDGAKNNGGSRLGEMEMAVFL 611 Query: 1280 AYGAAY----TLQEMLTVK----SDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIR 1331 + G + ++ + D N + KN + ++ + S + Sbjct: 612 SAGTTNHSDGFVVDICSHCGLYAHRDQNQQKYYCKNCNGKSEVVKTQIQYSSKHFKDLLN 671 Query: 1332 SLGINIELEDE 1342 SLG++I + + Sbjct: 672 SLGMSIYFKPK 682 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 51/405 (12%), Positives = 126/405 (31%), Gaps = 68/405 (16%) Query: 394 RYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRI 453 + + ++IE + + + ++ K+I + + + D N+R+ Sbjct: 2 KLIEQIIISDILPHCCDSKDIEENYVTKAQFLGLMVYKIICVYLKLNQDESRDSYLNKRV 61 Query: 454 RSVGEMAENQFRVGLVR-VERAVKERL-------------------------SLGDLDTL 487 GE+ +F + + + ++ L SL + Sbjct: 62 VGCGELLYQKFENIYKKNIIQNLRTNLFGNNSMFINKYYQTGYEDNNQSNQKSLDSIRNF 121 Query: 488 MPQDMINAKPISAAVKEFFGSSQLSQFM-------DQNNPLSEITHKRRISALGPGGLTR 540 M ++N IS ++ + + S M ++ + I R +S P + Sbjct: 122 MVDFVLNKNNISLDMENAIITGKWSTTMTGISKQLPNSSIPARIASLRMVSN-TPIFRNQ 180 Query: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT 600 + + E R ++ G CP+ +P+G + + ++ Y Sbjct: 181 QHSSLETRHINNNQLGFYCPVGSPDGADC------------EGFEKIQGMYYSQQQIQNK 228 Query: 601 DEI---HYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVST 657 +I + E N +++ + L+ + S +Y + Sbjct: 229 TKIYLFEWCDIQEISNKLVSPSAQILEYNNFLRNSINP-------STIPYPHCNYAPRNI 281 Query: 658 QQVVSVGASLIPFLEHDDA----NRALMGANM---QRQAVPTLRADKPLVGTGMERAVAV 710 V + S+ +D N+ L+ + Q + ++ GT + AV Sbjct: 282 FAFVQMKRSVQKPYSDNDLRSDINQYLILGSAPLVQTMTTNMINTNEKFNGTNVCIAVLQ 341 Query: 711 DSGVTA-----VAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI 750 + G ++ R Y+ +K + ++ + + Sbjct: 342 EHGYQQEDSITISSRLAKSMYLQCKNGDVKNFQHDLNYEKLDENG 386 Score = 84.1 bits (206), Expect = 3e-14, Method: Composition-based stats. Identities = 40/303 (13%), Positives = 88/303 (29%), Gaps = 47/303 (15%) Query: 707 AVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 + + + + Y + + + + NQ + Sbjct: 252 QILEYNNFLRNSINPSTIPYPHCNYAPRNIFAFVQMKRSVQKPYSDNDLRSDINQYLILG 311 Query: 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQED 826 P V + E G N+ +A + +GY EDSI +S R+ + Sbjct: 312 SAPLVQT----------MTTNMINTNEKFNGTNVCIAVLQEHGYQQEDSITISSRLAK-- 359 Query: 827 RFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGK 886 ++++Q ++ + KLDE+G++ G+ V GDI++GK Sbjct: 360 ---SMYLQCKNGDVKNFQHDL-------------NYEKLDENGLIREGSVVRKGDIVIGK 403 Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRAL 946 + + + D S++ G ++ V+ ++ Sbjct: 404 ILILNQEDQ-----------------IIDRSIKFE-YEEGIILKVKQI-NVDGQQKIIIR 444 Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 I + + K + Q G + + P + + Sbjct: 445 FIIPLYPQIGDKYAARCGQKGTIGTIRDENQMPYTNDGTPIDIIINPCSFSTRMTIGMNI 504 Query: 1007 KQN 1009 +Q Sbjct: 505 EQY 507 >UniRef50_Q5W438 RNA polymerase B subunit (Fragment) n=4 Tax=Cyanobacteria RepID=Q5W438_OSCAG Length = 220 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 98/218 (44%), Positives = 129/218 (59%), Gaps = 27/218 (12%) Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 +A + + D EG + D+V R + E + + QVDY VS Q+VSV SLIPFLEHDD Sbjct: 3 VAPGDISTDAEGTILGDIVPVRYRQEFTTTTPMQVDYAAVSPVQIVSVATSLIPFLEHDD 62 Query: 676 ANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRI--- 732 ANRALMG+NMQRQAVP LR ++PLVGTG+E A DSG+ V++ G + Y+D SRI Sbjct: 63 ANRALMGSNMQRQAVPLLRPERPLVGTGLEAQAARDSGMVIVSRMDGEISYIDGSRIIVK 122 Query: 733 ----------------VIKVNEDEMYPGE--------AGIDIYNLTKYTRSNQNTCINQM 768 + + ++ ++ + AG Y L KY RSNQ+TC+NQ Sbjct: 123 SLTVDADSNSSEESFLIREYDDLDLKTKQPSVWKQKYAGYIEYELQKYQRSNQDTCLNQR 182 Query: 769 PCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMP 806 P V G+ V G VLADG ST+ ELALG N+ V +MP Sbjct: 183 PLVYEGDQVVAGQVLADGSSTEGAELALGHNILVTYMP 220 >UniRef50_A9SMS1 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SMS1_PHYPA Length = 201 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 58/263 (22%), Positives = 90/263 (34%), Gaps = 68/263 (25%) Query: 1034 RKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTP 1093 R ++ KIV+V + + R GDK H KGVI I ED+P+ ++G Sbjct: 3 RVDKVTKYISIERNKIVRVRILLYRFSIVGDKFISWHSQKGVIGAILSQEDLPFIKDGIA 62 Query: 1094 VDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGA 1153 G I+ H + + + ++ + Sbjct: 63 P---------------GLIINPHAIPSRITMNHLLEMVISR------------------- 88 Query: 1154 DVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLY 1213 I F+ A + + + ++Y Sbjct: 89 ----------------------------IDATAFNKAYRSF------EANTAKFSKEKMY 114 Query: 1214 DGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEM 1273 G T E VT+G Y L H DK H+ S G +T+QPL G+++ G +F EM Sbjct: 115 YGATRLPIEAKVTIGICYYHTLRHQARDKAHSISKGIIQSLTKQPLEGRSRKGRLQFREM 174 Query: 1274 EVWALEAYGAAYTLQEMLTVKSD 1296 E A+GAA L + L SD Sbjct: 175 EKDCPIAHGAASMLLKKLKNTSD 197 >UniRef50_B9HB57 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HB57_POPTR Length = 260 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 4/152 (2%) Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFER 1223 +E+ G +I + L G R+Y+GRT E Sbjct: 108 GKNEKAALGKGIACGGSKRCATPVFTLSVDDIVDQLHRAKFSRWGNERVYNGRTSEMVCS 167 Query: 1224 PVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA 1283 V VG ++ +L + +DK+ +TG +T P+ G FGG +FGE+E L A+GA Sbjct: 168 LVFVGPIFYQRLIDMAEDKVKFLNTGPVQPLTSHPVAG---FGGIKFGEIERDCLIAHGA 224 Query: 1284 AYTLQEMLTVKSDDVNGR-TKMYKNIVDGNHQ 1314 + L E L SD + K + Sbjct: 225 SANLHECLFTFSDSSEMHICQKCKKCGQRDPT 256 >UniRef50_C1TQA8 DNA-directed RNA polymerase, beta subunit/140 kD subunit n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQA8_9BACT Length = 1692 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 119/632 (18%), Positives = 221/632 (34%), Gaps = 120/632 (18%) Query: 673 HDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVV-----QYV 727 A RAL + ++ VP + K ++ + ++S T+ + R G+V Sbjct: 148 IKRAERALKKLSESKKKVPEDKLKKDMLVILCKLESNLNSFWTSRSVRSGLVKALPLDDS 207 Query: 728 DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP-------CVSLGEPVERG 780 ++ R + + M L + N+ C P + + +G Sbjct: 208 NSLRCLELERQVTMASKVKTNGRVRLPHKSHKNR-LCPFHTPESEKIGLQLFMTATAHQG 266 Query: 781 DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840 D + GE ++ V +P+ ++ +++ + +++ E Sbjct: 267 DGGKGVELAEDGEEQSLFSVAVGMVPYPHHSDGPRLMMGGKNLKQA--------EQNIEG 318 Query: 841 RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900 + L P I GA + L G + G + Sbjct: 319 GEPSLVPGYI----------------------EGARGKKIEALEGHLDEAGRFKPYLGVN 356 Query: 901 LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR-ALEIEEMQLKQAKKD 959 L A+ K +D G V+ + ++ K+ +I E++ + K Sbjct: 357 ALVAVMPWKGLTYED----------GLVVSRSFAEKLKMKPKKQPTGKIYELKNEMLPKA 406 Query: 960 LSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYD 1019 +E L + ++R + LP + + Y Sbjct: 407 GVKEFSELIEKIEEQVRDLAGKKKKTYIFDKPLPLPG------------YLAGEKSHSYP 454 Query: 1020 ELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079 + K + D P ++IV + + R ++ GDK+ GR+GNKGV++KI Sbjct: 455 WFMPGTLVNVSVKSVIDRKRKDSIPTKVEIVYEFD-IVRPLRIGDKITGRNGNKGVVTKI 513 Query: 1080 NPIEDMPYD----ENGT----PVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAM 1131 + MP +GT VD++++P + R N+GQILE G+A Sbjct: 514 EEDDAMPKVVLKGPDGTERVETVDLIISPCSIVGRKNLGQILEMGHGLA----------- 562 Query: 1132 LKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAK 1191 + +E + + ++R + + L+ + + L++ KG +GA+ Sbjct: 563 -LKAREWGLIDDEVKRDGLYRGEEWRNTVLTIL---KKLGLSDETDKGSGFPVRYREGAQ 618 Query: 1192 EAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARST-GS 1250 E E++ GY Y+ +L H VD K+ AR T G Sbjct: 619 EKEVRA----------------------------FCGYQYISRLVHHVDKKLQARGTDGP 650 Query: 1251 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG 1282 + QP G A+ G QR GEME WA+ + G Sbjct: 651 SNRFIGQPTSGGAKAG-QRLGEMENWAILSRG 681 Score = 67.2 bits (162), Expect = 4e-09, Method: Composition-based stats. Identities = 51/348 (14%), Positives = 92/348 (26%), Gaps = 56/348 (16%) Query: 660 VVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAK 719 S L PF + + Q T A + G G+E A + + Sbjct: 235 HKSHKNRLCPFHTPESE-------KIGLQLFMTATAHQGDGGKGVELAEDGEEQS-LFSV 286 Query: 720 RGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVER 779 G+V Y S + + QN + V R Sbjct: 287 AVGMVPYPHHSDGPRLMMGGKNLKQA--------------EQNIEGGEPSLVPGYIEGAR 332 Query: 780 GDVLA--DGPSTDLGEL--ALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQE 835 G + +G + G LG N VA MPW G +ED ++VS Sbjct: 333 GKKIEALEGHLDEAGRFKPYLGVNALVAVMPWKGLTYEDGLVVSRSFA------------ 380 Query: 836 LACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQL 895 E++ + +L + G V L+ K+ + Sbjct: 381 ------------EKLKMKPKKQPTGKIYELKNEMLPKAG--VKEFSELIEKIEEQVRDLA 426 Query: 896 TPEEKLLR--AIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRA--LEIEEM 951 ++K + S P + GT+++V V + ++ Sbjct: 427 GKKKKTYIFDKPLPLPGYLAGEKSHSYPWFMPGTLVNVSVKSVIDRKRKDSIPTKVEIVY 486 Query: 952 QLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLE 999 + + + G + + + L +E Sbjct: 487 EFDIVRPLRIGDKITGRNGNKGVVTKIEEDDAMPKVVLKGPDGTERVE 534 Score = 62.6 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 11/108 (10%) Query: 484 LDTLMPQDMINAKPISAAVKEFFGSSQLSQ------FMDQNNPLSEITHKRRISALGPGG 537 D L ++ + + + F+ S + +D +N L + +R+++ Sbjct: 167 EDKLKKDMLVILCKLESNLNSFWTSRSVRSGLVKALPLDDSNSLRCLELERQVTMA---- 222 Query: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYG 585 ++ + VR H +H R+CP TPE IGL ++ A + G Sbjct: 223 -SKVKTNGRVRLPHKSHKNRLCPFHTPESEKIGLQLFMTATAHQGDGG 269 >UniRef50_D1INW9 Whole genome shotgun sequence of line PN40024, scaffold_84.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1INW9_VITVI Length = 1309 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 75/205 (36%), Gaps = 22/205 (10%) Query: 408 SLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVG 467 + + + ++++++D K +DD D++GN+R+ G++ F Sbjct: 650 IANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSGQLISLLFEDL 709 Query: 468 LVRVERAVKERLSL-----GDLDTLMPQDMINAKPISAAVKEFFGSSQL----------- 511 + VK+ + I I+ ++ + Sbjct: 710 FKTMISEVKKTIDAILAKPSRSSRFDFSQFIVRDSITVGLERTLSTGNWDVKRFRMHRKG 769 Query: 512 -SQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570 SQ + + + + + H +IS + R R + P+ +G +CP +TPEG G Sbjct: 770 MSQVVARLSYIGSLGHMTKIS----PQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACG 825 Query: 571 LINSLSVYAQTNEYGFLETPYRKVT 595 L+ +L++ E+P + Sbjct: 826 LVKNLALMTHVTTDEE-ESPLISLV 849 Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 98/254 (38%), Gaps = 49/254 (19%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY 62 + K+ F P+ L V L+ LDSF F++ D ++ R+ I S Sbjct: 28 FPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTD------IKKIVRANDRIVSS 81 Query: 63 -SGNSELQYVSYRLGEPVFD---------VQECQIRGVTYSAPLRVKLRLVIYEREAPEG 112 + L++ R+GEP C++ +TY+AP+ V + + Sbjct: 82 VDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTR 141 Query: 113 TVKDIKEQEVYMGEIPLM------------------------TDNGTFVINGTERVIVSQ 148 +++ +V +G +P+M G FV+ GTE+VI+ Q Sbjct: 142 ----VEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQ 197 Query: 149 LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR-RRKLPAT 207 S K + + V + + K+ +++++++ K+P Sbjct: 198 EQLSKNRIIIDTDKKGNINASVTSSTESTKSK----TVIVMEKEKIWLQLNQFTSKIPIM 253 Query: 208 IILRALNYTTEQIL 221 I+++A+ ++Q + Sbjct: 254 IVMKAMGMESDQEV 267 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 54/195 (27%), Gaps = 30/195 (15%) Query: 591 YRKVTDGVVTDEIHYLSAIEE---GNYVIAQAN---SNLDEEGHFVEDLVTCRSKGESSL 644 + + +++ LS E +++I F L R G+ Sbjct: 1113 VLFLCYSLGVEDLELLSGEELHTPNSFLIIFNGLILGKHRRPQRFANALRKLRRAGKIGE 1172 Query: 645 FSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGM 704 F V+ + S G + + D ++ + + ++ + +R + G+ Sbjct: 1173 FVSVFVNEKQ-HCVYIASDGGRVCRPVVIADKGKSRIKEHHMKELIDGVRTFDDFLRDGL 1231 Query: 705 ERAVAVDSGVT-----------------------AVAKRGGVVQYVDASRIVIKVNEDEM 741 + V+ + G++ + ++ + M Sbjct: 1232 IEYLDVNEENNALIALYEADAKPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAM 1291 Query: 742 YPGEAGIDIYNLTKY 756 G YN + Sbjct: 1292 GKQAMGNIAYNQANF 1306 Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 64/230 (27%), Gaps = 28/230 (12%) Query: 143 RVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRR 202 R +V Q S F +D K + + ++ + D I + Sbjct: 50 RGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVDPSIYLRFKDVRIGEPSITVDGISEKL 109 Query: 203 KLPATIILRALNYTTEQILDLFF----EKVIFEIRDNKLQMELVPERLR----------- 247 P T L + Y ++++ + + N + + +P LR Sbjct: 110 N-PHTCRLSDMTYAAPILVNIEYITGSHVQKTRVEKNDVVIGRMPIMLRSCCCVLYKKDE 168 Query: 248 -----------GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKV 296 F ++ KV + + + R I +K V + K Sbjct: 169 AELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDTDKKGNINASVTSSTESTKS 228 Query: 297 VAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPY 346 +++ L + ++ + G + + + + Y Sbjct: 229 KTVIVMEKEKIWLQLNQFTS-KIPIMIVMKAMGMESDQEVVQMVGRNPRY 277 >UniRef50_A6BAY3 DNA-directed RNA polymerase beta chain (Fragment) n=2 Tax=Gammaproteobacteria RepID=A6BAY3_VIBPA Length = 285 Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 172/253 (67%), Positives = 206/253 (81%), Gaps = 4/253 (1%) Query: 194 LFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASF 253 L+VRIDRRRKLPA+IILRAL +TE+ILD+FFEKV FE++D L MELVP+RLRGETASF Sbjct: 1 LYVRIDRRRKLPASIILRALGKSTEEILDIFFEKVNFEVKDQTLLMELVPDRLRGETASF 60 Query: 254 DIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAA 313 DIE+NGKVYVE+GRR+TARHIRQLEKD V IEVPVEYI GKV +KDYI+E+TGE+I A Sbjct: 61 DIESNGKVYVEQGRRVTARHIRQLEKDGVDHIEVPVEYIVGKVASKDYINEATGEIIVNA 120 Query: 314 NMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPG 373 N E+SL+ LA LSQ+GHK +E LFTNDLDHGP++SETLR+D T DR+SALVEIYRMMRPG Sbjct: 121 NQEISLEALANLSQAGHKALEVLFTNDLDHGPFMSETLRIDSTVDRISALVEIYRMMRPG 180 Query: 374 EPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLI 433 EPPT+EAAE+LFE+LFFSE+RYDLS VGRMKFN S+ RE+ + G I +++ Sbjct: 181 EPPTKEAAEALFESLFFSEERYDLSTVGRMKFNSSIGREDAQEQGTE----ISLMIQGDE 236 Query: 434 DIRNGKGEVDDID 446 + D D Sbjct: 237 VLVQENALSHDYD 249 >UniRef50_UPI0001924FAA PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001924FAA Length = 304 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 6/109 (5%) Query: 1217 TGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1276 T E + +G +Y KL H+V DKMHAR+ G +++T+QP G+++ GG R GEME Sbjct: 18 TREPLSAYIYMGPVYYQKLKHMVLDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERD 77 Query: 1277 ALEAYGAAYTLQEMLTVKSD----DVNGRTKM--YKNIVDGNHQMEPGM 1319 L YGA+ + E L + SD DV + + Y + M Sbjct: 78 CLIGYGASMLIVERLMISSDAFEIDVCSKCGLIGYSGCFSKLDSLRLSM 126 >UniRef50_C5LIK5 DNA-directed RNA polymerase III subunit, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LIK5_9ALVE Length = 186 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 15/153 (9%) Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYM-LKLNHLVDDKMHARSTGSYSL 1253 + +L + + + + G TGE E + VG ++ KL+H+V DK+HARSTG + Sbjct: 42 LLWILMVYPVERLVKEYIISGVTGEALECYIFVGRIHYCQKLDHMVMDKIHARSTGLVNQ 101 Query: 1254 VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTKMYKNIV 1309 +T+QP G+ + F E+ A+ L L + SD V R Sbjct: 102 LTRQPTEGRIKNA---F-ELSND------ASNVLLGRLMLSSDVFTAYVCRRCGSLSESA 151 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P + +L +E++++ I L+ E Sbjct: 152 MSENIVNIRVPFACKLLFQELQAMHICPRLKVE 184 >UniRef50_A5AMN9 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A5AMN9_VITVI Length = 496 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 79/268 (29%), Gaps = 37/268 (13%) Query: 840 SRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEE 899 R L + P + + + + + Sbjct: 195 CRMDSLLYLLVYPQRPLLTTRTIELVGYDKL-------------------------GAGQ 229 Query: 900 KLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDG--VEKDKRALEIEEMQLKQAK 957 A+ D++D+ + + + V + ++ + ++ + Sbjct: 230 NATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVG 289 Query: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 D +QIL+ + ++ + K + L + + + Sbjct: 290 HDAER-MQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPDSAYK------P 342 Query: 1018 YDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVIS 1077 + E + R D +K + RR + GDK + RHG KGV Sbjct: 343 SRQTFKGPEGEASVVDRVALCSD---KNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCG 399 Query: 1078 KINPIEDMPYDENGTPVDIVLNPLGVPS 1105 I ED P+ E G D+++NP G P Sbjct: 400 TIIQQEDFPFSERGICPDLIMNPHGFPR 427 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 92/291 (31%), Gaps = 14/291 (4%) Query: 754 TKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFE 813 TK R + + P P+ + +L GQN VA M ++GY+ E Sbjct: 192 TKLCRMDSLLYLLVYPQ----RPLLTTRTIE---LVGYDKLGAGQNATVAVMSYSGYDIE 244 Query: 814 DSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAA--LSKLDESGIV 871 D+I++++ + I +++ + V++ + + VG A + LD+ G+ Sbjct: 245 DAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVGHDAERMQILDDDGLA 304 Query: 872 YIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDV 931 G + DI + K +P +T + + A + + P G + V V Sbjct: 305 APGEIIKPNDIYINKESPI----ITKGPLISPVGLPDSAYKPSRQTFKGPEGEASVVDRV 360 Query: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991 + + + L + + K S Q G + + L Sbjct: 361 ALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIM 420 Query: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL 1042 P + + L K K+ + L Sbjct: 421 NPH-GFPRYQRWIVIGFEIVSSLKINLHTSKLILVGKVGKVEEVDSSLSSL 470 >UniRef50_Q1KS34 DNA-directed RNA polymerase (Fragment) n=1 Tax=Chlamydophila pneumoniae RepID=Q1KS34_CHLPN Length = 229 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 1/173 (0%) Query: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD-DLAPGVL 1047 ++++ ++ ++L + + E L+ L Y+ E + + I +GD DL GV+ Sbjct: 57 IERIEQEDLVDLLMPNCEMYEVLKGLLSDYETALQRLEINYKTEVEHIREGDADLDHGVI 116 Query: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRM 1107 + VKVY+A KR++Q GDKMAGRHGNKGV+SKI P DMPY NG V ++LNPLGVPSRM Sbjct: 117 RQVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRM 176 Query: 1108 NIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 N+GQ+LETHLG AAK G + + + ++ + + D Sbjct: 177 NLGQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQGLPEDGKSFLYD 229 >UniRef50_UPI0000E4A667 PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide B, partial n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A667 Length = 224 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 48/318 (15%), Positives = 83/318 (26%), Gaps = 94/318 (29%) Query: 779 RGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELAC 838 L P T LG + +P+ +N + ++ T Sbjct: 1 ETTHLEIEPFTILG-------VCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI----AYNQ 49 Query: 839 VSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPE 898 +R L P V + + + Sbjct: 50 RNRIDTLMYLLAYPMAPLVKSKTIDLIGFDKLPA-------------------------G 84 Query: 899 EKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKK 958 + + A+ D++D+ + V Sbjct: 85 QNAVVAVMSYSGYDIEDALILNKASVDR-------------------------------- 112 Query: 959 DLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQY 1018 ++ V K + L+ T++ +Q+ ++ Y Sbjct: 113 -----------------GERVINKQVLLNKSMPVVNMNPLQASPTNQPQQHDYREVPITY 155 Query: 1019 DELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 + +K+ P + KV L RR + GDK + RHG KGV Sbjct: 156 KGTADSYIEKVLV---------TSNPEEAFLFKVLLRQTRRPEIGDKFSSRHGQKGVCGL 206 Query: 1079 INPIEDMPYDENGTPVDI 1096 I EDMP+DE G DI Sbjct: 207 IVQQEDMPFDERGICPDI 224 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 71/285 (24%), Gaps = 61/285 (21%) Query: 705 ERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTC 764 E T + G++ Y ++ + M G Y + R + Sbjct: 1 ETTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIAY--NQRNRIDTLMY 58 Query: 765 INQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 + P L + +L GQN VA M ++GY+ ED++++++ V Sbjct: 59 LLAYPMAPLVKSKTID-------LIGFDKLPAGQNAVVAVMSYSGYDIEDALILNKASVD 111 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 G V +L+ Sbjct: 112 R------------------------------------------------GERVINKQVLL 123 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 K P + D ++ + + V V + + Sbjct: 124 NKSMPVVNMNPLQ----ASPTNQPQQHDYREVPITYKGTADSYIEKVLVTSNPEEAFLFK 179 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989 L + + + K S Q GL + + + Sbjct: 180 VLLRQTRRPEIGDKFSSRHGQKGVCGLIVQQEDMPFDERGICPDI 224 >UniRef50_P41187 DNA-directed RNA polymerase subunit beta (Fragment) n=66 Tax=Alphaproteobacteria RepID=RPOB_LIBAF Length = 146 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 91/138 (65%), Gaps = 6/138 (4%) Query: 3 YSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDP----EGQYGLEAAFRSVFP 58 + + RK FGK P+++D+P L+ +Q S+ +F+ + GL+AAF+SVFP Sbjct: 9 HCVQWSRGARKFFGKNPEIIDIPDLIEVQKASYDQFLMMNTAPEDRPNEGLQAAFKSVFP 68 Query: 59 IQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREA--PEGTVKD 116 I+++SG + L++VSY P FDV +C R +TY+ PL++ LRL++++ + ++KD Sbjct: 69 IKAFSGAAMLEFVSYEFDPPKFDVDDCLRRDLTYAVPLKIILRLIVFDVDEFTGAKSIKD 128 Query: 117 IKEQEVYMGEIPLMTDNG 134 IKEQ +YMG++PLMT +G Sbjct: 129 IKEQSIYMGDVPLMTKDG 146 >UniRef50_Q2Z143 Putative uncharacterized protein n=1 Tax=Pseudomonas phage EL RepID=Q2Z143_9CAUD Length = 768 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 93/580 (16%), Positives = 177/580 (30%), Gaps = 58/580 (10%) Query: 662 SVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGME-RAVAVDSGVTAVAKR 720 V ++LI F A R M NM ++VPT A + ++ TG E + A Sbjct: 58 GVSSNLILFPHEASAGRLYMAGNMIPKSVPTEGAGERMMVTGYEFEEHYGGTARKVEAPA 117 Query: 721 GGVVQYV---------DASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMP-- 769 +V+ + + + + D+ L +Y N Sbjct: 118 NMLVEEIFFVQSLVPGKDTDDWNSIYVVFKNDEQNAYDLLELPRYNTHNHYVGFEYKYDK 177 Query: 770 ----CVSLGEPVERGDVLADGP-STDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQ 824 + G +G V A P ++ GE VA + ED +L++ + Sbjct: 178 EKLRKLRKGATFAKGTVFAKSPRISENGEWCFAMPTLVAAYS-DQRTEEDGVLITRSYAE 236 Query: 825 EDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILV 884 H + T + P + + E GIV + LV Sbjct: 237 RSACMFKHEFSYEWNEDEWIPLMLYGTDENPQPLPESGDNIREDGIVMGFRRRIKENALV 296 Query: 885 GKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 +T K + V D P V V+ V V + R Sbjct: 297 S-LTKKSLREPDL---------------VYDKLFYAP--VDAVVMSVTVRSDRM---KNR 335 Query: 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTD 1004 + ++Q + + + + +++ + + A + + +P L+ + + Sbjct: 336 SNNRGTDYIEQHHNAMLDRYEKRQNEMWNNVIRWYEGK-IAANRGEDIPITFDLDTFIRN 394 Query: 1005 EEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGD 1064 L + E KL+ I +L V VK Sbjct: 395 AYGNYTRNGLGRINPLARVERWDKLKDWNVTI----ELKERVKGRVKF------------ 438 Query: 1065 KMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGI 1124 K AG +G+KGV ++ ++ P +GT + + + + R ++E + + Sbjct: 439 KYAGLNGDKGVCVRVIEDDEAPTYPDGTRAEFIKDNVPAFRRQIFSLLMELSINYVNMNV 498 Query: 1125 GDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 ++ + Q + + Y+ G ++ EE R + I+ Sbjct: 499 QREVRHLRLQGDYEGAFQALMTF-YETGFPEFSELVAHALVTEEEKREHVDDVCRRKISV 557 Query: 1185 PVFDGAKEAEIKELLKL-GDLPTSGQIRLYDGRTGEQFER 1223 V K + + L P Q + GE+ E Sbjct: 558 HVVSNTKLYGVNLINALRRQYPYKPQKAIIVNALGERVET 597 >UniRef50_UPI0001926473 PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2 n=1 Tax=Hydra magnipapillata RepID=UPI0001926473 Length = 534 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 56/420 (13%), Positives = 126/420 (30%), Gaps = 48/420 (11%) Query: 4 SYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYS 63 + KR+ + P L V L+ +DSF FI + + + Sbjct: 3 DASPIKRVEDKWKLVPAFLKVKGLVKQHIDSFNYFINTEIKDIVKANERVQ-----TDAD 57 Query: 64 GNSELQYVSYRLGEPV----------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGT 113 L+Y+ +G P EC++R +TYSAP+ V + Sbjct: 58 PVWYLKYLDVHVGAPDVEESFNVSRPVAPHECRLRDLTYSAPITVDIEYT--------RG 109 Query: 114 VKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSP----GVFFDSDKGKTHSSGK 169 + + + +G +P+M + V+ G + +++L+ P G F K + Sbjct: 110 NQRVVRNSLPIGRMPIMLRSSNCVLAGKNEIELAKLNECPIDPGGYFVVRGSEKVLLIQE 169 Query: 170 VLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVI 229 L R+I + KD + + ++ L + V Sbjct: 170 QLSKNRMIVELDTK---NHQEKDAEIAELSEK--------VKRLEENNANLPPSSSPAVC 218 Query: 230 FEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPV 289 + +L I+ + + ++ I L +IE Sbjct: 219 YSQIAKQLAKPGSE------LYDASIKVSKSHEILSSKKSKNVVIFGLPNSQKTIIEDRK 272 Query: 290 EYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISE 349 V + + +E + L+ S+ F N++ ++ Sbjct: 273 TDDRNMVNKLIRLLNRRIIIKSTFRLESKVPLVNNASKPLVVE----FENEVAQNEMLAA 328 Query: 350 TLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSL 409 + ++ +++ E + ++ ++ ++ V N+ + Sbjct: 329 ARELSTIEAYKKFKLDSIKIIDGYELYQADRNRIGGVAIYVNKRLTNIEIVNVHLNNKEI 388 >UniRef50_A9SWU4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SWU4_PHYPA Length = 440 Score = 123 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 103/309 (33%), Gaps = 24/309 (7%) Query: 378 REAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRN 437 +E + + LS + + + + L + + + Sbjct: 122 QERNYTFRYLARKEKYELQLSKCHCKIYMVNGVLKVSLSHNNLVNIFAVMKVLRKTIASA 181 Query: 438 GKGEVDDIDHLGNRRIRSVGEMAENQFRVGL--VRVERAVKERLSLGDLDTLMPQDMINA 495 + + IDH + + G + E+Q + + + L+ D D Q Sbjct: 182 KREILSWIDHP--KEVL--GLLLESQLDATTLDSNIIHSTERNLATLDDDKKDIQSNFKT 237 Query: 496 KPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHY 555 I + +SQ + + L ++H RR+ ++ERA +R +H T Sbjct: 238 G-IWKGYTQGDNKRTISQMLSSKSILDSLSHVRRVEI-----SSKERASAIMRQIHLTQL 291 Query: 556 GRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYV 615 G +CP ETPEGP++G + LS V V + + L + ++ Sbjct: 292 GYICPCETPEGPDVGAVKYLSSTCTI---------IPYVDPDDVLNYLGVLPQENDALFI 342 Query: 616 IAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 + ++ + + + + KGE +F + Y + + L Sbjct: 343 NRLFIARTSKD-NILRSIKAYKRKGEVFMFVS--IYYSSDKEMHIQTTRGRYSRPLLICT 399 Query: 676 ANRALMGAN 684 A + +N Sbjct: 400 NESAPVCSN 408 >UniRef50_P05472 Probable DNA-directed RNA polymerase n=4 Tax=Saccharomycetaceae RepID=RPOL_KLULA Length = 982 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 11/153 (7%) Query: 1195 IKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLV 1254 + LG + G+ Y + E + VG L L H VDDK+ R+ G+ +V Sbjct: 555 FPSRMTLGQIKEMGEKEEYVYIEDTKLENKIIVGKCLYLALRHQVDDKVQFRNGGNIDIV 614 Query: 1255 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQE-----MLTVKSDDVNGRTKMYKNIV 1309 T+QP+ G+ + GG RFG+ME L GA T++E +K D GR N + Sbjct: 615 TKQPVSGRKRSGGLRFGQMERDILIGLGAWNTIKEIWSIDRSKIKIDSKTGRI----NWI 670 Query: 1310 DGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + +ME G + F + L +RSLG +I ++++ Sbjct: 671 RYDKEMEIG--QYFKICLSYMRSLGRDILIKND 701 Score = 90.7 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 74/487 (15%), Positives = 145/487 (29%), Gaps = 52/487 (10%) Query: 336 LFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRY 395 L + + + + + + L + + E + FS+DR Sbjct: 41 LSYCAIYNDRELPIMIGSSLDISKENPLN-LKGYFIIDGICKSVNNIKIKEKIHFSKDRA 99 Query: 396 DLSAVGRMKFNRSLLREEIEGSGILSKD------DIIDVMKKLIDIRNGKGEVDDIDHLG 449 LS ++ L + DII ++ N +D + Sbjct: 100 YLSDDSIIQIKDMFNMTIKNNKNTLKWNLPLNWSDIIKYSDHKKELENHLKIIDSFNKKA 159 Query: 450 NRRIRSVGEMAENQ--FRVGL-VRVERAVKERLS-----LGDLDTLMPQDMINAKPISAA 501 + I++ ++ F L +R E + RL + D+ + + + Sbjct: 160 EKPIKNEIDLISLCYMFECWLGLREEPRLYYRLVTPGELIHDIIKEKRSVIKCFRTNTWT 219 Query: 502 VKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI 561 VK +S+ M N + ++ RRI+ +R A + R V ++CPI Sbjct: 220 VKNIRNVFCVSEDMKHYNKIGDLESIRRITI----PSSRSNAPMKERRVEDNDKYKICPI 275 Query: 562 ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANS 621 +T +G G I L A+ K +G+ T N+ Sbjct: 276 QTSDGSLCGTITYLCKDAKITTK-IDTIIVEKADNGLHTF----------------FNNT 318 Query: 622 NLDEEG-HFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRAL 680 L + E + C K + ++ + + S L+ + ++ R++ Sbjct: 319 YLGKVKVKTKESDIYCIDKICYIFGNIGRI----IKGNYLCSYTGELLDYKNYNPPIRSM 374 Query: 681 MGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE 740 NM +QA+ + + + D G ++ IVI + Sbjct: 375 FVCNMIKQAITGDSVYSGDILHNTKSLINGDLGHKLEIAIMPWKKFNIEDAIVISNKVSK 434 Query: 741 MYPGEAGI-----DIYNLTKYTRSNQN------TCINQMPCVSLGEPVERGDVLADGPST 789 ++ + I D+ L Y NQN P + Sbjct: 435 LFRSKRTIIHRENDVKILNVYVNINQNITKGDLLYRTYDPMQVKTINFVYAEHDGKVKEI 494 Query: 790 DLGELAL 796 E L Sbjct: 495 IREEKYL 501 >UniRef50_A9U5J3 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9U5J3_PHYPA Length = 499 Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 39/301 (12%) Query: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI 616 +CP E EGP+I ++ LS Y V V + + L + ++ Sbjct: 164 YICPCEILEGPDISVVKYLSSTCTITPY---------VDPDDVLNHLGILPQGNDALFIN 214 Query: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676 + + + L + KGE+ +F V Y + + + L Sbjct: 215 GLFVTRTSK-ESVLRSLKAYKRKGEAFMFVS--VYYSSDKKIHIQTTRSRYNRPLLICTN 271 Query: 677 NRALMGAN---------MQRQAVPTLRADKPLVGTGMERAVAVDSGV-----TAVAKRGG 722 + +N + + + + T + + V Sbjct: 272 GSTPVYSNTTVDDIHKAGMLEMIDATEQMQCFIATTHDSICNQHTHVEIHPSFMFGLFAS 331 Query: 723 VVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDV 782 + Y + ++ V + M + ++ +T ++ Q P + + Sbjct: 332 MTPYANFNQSSRIVFQSAMSKQAMPLTLHIMTSIVSDSKILTYAQKPKCTTIISNTIKEY 391 Query: 783 LADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRD 842 N+ +A + + GYN EDS+L ++ + F++I + + + Sbjct: 392 -------------NRVNVVIAVLSYFGYNQEDSLLFNKSSIGRGLFSSIKYEVVEIIENK 438 Query: 843 T 843 Sbjct: 439 F 439 >UniRef50_Q48975 DNA-directed RNA polymerase (Beta) (Fragment) n=1 Tax=Mycoplasma capricolum RepID=Q48975_MYCCA Length = 345 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 28/240 (11%) Query: 95 PLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPG 154 P +++ ++ ++ + V K EV++G+ PLMT+ GTF+ING+++VIVSQL RSPG Sbjct: 107 PDLIQIDIIEDKKTSLICNVSIYKSGEVFLGDFPLMTEAGTFIINGSQKVIVSQLVRSPG 166 Query: 155 VFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDN-------LFVRIDRRRKLPAT 207 +F+ + + +G+++Y A IIP RG+WL++E D K L+V+ID+ RK AT Sbjct: 167 AYFNKELNRK--TGEMIYFADIIPSRGTWLEYETDSKKIGSDAINPLYVKIDKSRKTTAT 224 Query: 208 IILRALNYTTEQILDLFFEKV-------------IFEIRDNKLQMELVPERLRGETASFD 254 +L A + + IL++F F+I E+ + +GETA+ + Sbjct: 225 SLLLAFGISKDDILNIFDNDEVLVETLQQDSIIGDFKIDWLNQVQEIYKKIRQGETATSE 284 Query: 255 --IEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICA 312 + + +K + + R K + + I KV+A+D +D + LI Sbjct: 285 GASKFINSILFDKRKYDLTKAGRFKLKQKLSI----KNRILNKVIAEDILDANNNVLIAK 340 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 63/380 (16%), Positives = 125/380 (32%), Gaps = 65/380 (17%) Query: 67 ELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGE 126 L ++ EP V++ + Y AP+ L+L + + E + + +++ Sbjct: 13 VLTLENWGFKEPRLSVRQAREESKIYDAPIYANLKLSVNKTEEIQKEFDGVDQED----- 67 Query: 127 IPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDF 186 T +V+ L G + + S + I Sbjct: 68 --------------TLKVLTHWLEEKTG---NGNITFKQQSQNSYFFEITIKKS------ 104 Query: 187 EFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERL 246 + D + + I +K + + ++ + P L Sbjct: 105 --EKPDLIQIDIIEDKKTSLICNVSIY-------------------KSGEVFLGDFP--L 141 Query: 247 RGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDEST 306 E +F I + KV V + R + + + + I + +Y +S Sbjct: 142 MTEAGTFIINGSQKVIVSQLVRSPGAYFNKELNRKTGEMIYFADIIPSRGTWLEYETDSK 201 Query: 307 GE-------LICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTN-- 357 L + + L G + + L N D+ + ETL+ D Sbjct: 202 KIGSDAINPLYVKIDKSRKTTATSLLLAFGISKDDIL--NIFDNDEVLVETLQQDSIIGD 259 Query: 358 ---DRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414 D L+ + EIY+ +R GE T E A ++ F + +YDL+ GR K + L + Sbjct: 260 FKIDWLNQVQEIYKKIRQGETATSEGASKFINSILFDKRKYDLTKAGRFKLKQKLSIKNR 319 Query: 415 EGSGILSKDDIIDVMKKLID 434 + ++++D + LI Sbjct: 320 ILNKVIAEDILDANNNVLIA 339 >UniRef50_D2J6W7 Putative uncharacterized protein n=1 Tax=Staphylococcus sp. CDC3 RepID=D2J6W7_9STAP Length = 1807 Score = 94.2 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 59/370 (15%), Positives = 117/370 (31%), Gaps = 38/370 (10%) Query: 876 EVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEK-----ASDVKDSSLRVPNGVSGTVID 930 ++ GD+ +++ K + + + I ++ D+S NG T D Sbjct: 602 KLYHGDVYGMRISDKNKEKENIVKTYQNRIKFDESVLDLNPSELDASFDDENGEEYTGED 661 Query: 931 VQV-FTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAG-----LFSRIRAVLVAGGV 984 F ++ + + ++ Q+L G + + L+ + Sbjct: 662 KSYRFNIRELDGIFDRSLSSDGANLGLVRYFNKGNQVLNTGEVVQTTDGIVGSALIKDNL 721 Query: 985 EAEKLDKLPRDRWLELGLTDEEKQNQLEQ----LAEQYDELKHEFEKKLEAKRRKITQGD 1040 + D R Q E +K ++ I G Sbjct: 722 PFTEGDPGDRSMMAGNQYMKARNVEQANVAYITYKGYTFEDGSVISEKFAREQGAIVNGY 781 Query: 1041 DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP 1100 D + ++ GDK++ HGNK IS + D + EN +D+++NP Sbjct: 782 DENGDPI-----------PLEVGDKISDLHGNKSTISYVASENDDVFKEN-PNLDVIMNP 829 Query: 1101 LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVD 1160 VPSR+N G +LE + E + + Sbjct: 830 HSVPSRLNTGLVLEMQ--------NSGEETPVYHNGERIASSAPLNVVITDITARDKTKT 881 Query: 1161 LSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL---GDLPTSGQIRLYDGRT 1217 S DE + ++LR+G + A E+ +K ++ + +++ Y T Sbjct: 882 YSDEYDENGQLVEKSLREGRLFGNQLAWVANGLELDNTMKEVYGSNIKSFEKLKAYLNVT 941 Query: 1218 GEQFERPVTV 1227 G + + Sbjct: 942 GLDIDEDTAI 951 >UniRef50_Q23DP4 Myosin n=2 Tax=Tetrahymena thermophila RepID=Q23DP4_TETTH Length = 1927 Score = 91.1 bits (224), Expect = 3e-16, Method: Composition-based stats. Identities = 64/579 (11%), Positives = 172/579 (29%), Gaps = 69/579 (11%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFI---EQDPEGQYGLEAAFRSVF 57 M ++++ + + K +LD+ Q + F++F + Q + F++ Sbjct: 463 MPKDISKQQILSSNLYKSIGLLDIYGFEVFQKNGFEQFFINYTNERLHQLYISYVFKAE- 521 Query: 58 PIQSYSGNSELQYVSYRLG---------------EP----VFDVQECQIRGVTYSAPLRV 98 + E + +P +C+ +G A L Sbjct: 522 ELTFKEERLEQYFKKLDFKDNQDVIDVLDNNDRQKPLGIFKLLEDKCKQKGTIIDAKLLS 581 Query: 99 KLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTER---VIVSQLHRSPGV 155 ++ ++E + + + TF+I T + + Sbjct: 582 DIQKQHGDKEIYIKNPNYKFKNPKKIND-------STFIIIHTAKEVEYDIKGFIEKNKD 634 Query: 156 FFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNY 215 + ++ ++ ++II + L E + +R ++ + L + Sbjct: 635 EVNEGLINKINNSQIRGISQIISEKDKELLDESTASQQVKMRQISQKFISEMSFLMDVLM 694 Query: 216 TTE-QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHI 274 Q + + + L R G S +I + ++ Sbjct: 695 QCNVQFIRCIKPNEEKKPQLFNQGFTLNQIRYLGVLESINIRKQSYPIRQSYESFFNKYS 754 Query: 275 RQLEKDDVKLIEVPVEYIAGKVVAKDYID--ESTGELICAANMELSLDLLAKLSQ----- 327 + ++ + + ++ K++ + + ++L ++ Sbjct: 755 LLMLNKLNIQDQINKKSLVEELFRKNFSSIPKENRLFGVTKIFFKNYEVLQQIEDIYNKE 814 Query: 328 --------SGHKRIETLFTNDLDHGPYISETL--RVDPTNDRLSALVEIYRMMRPGEPP- 376 + I+ LF I ++ + + A+ I ++ Sbjct: 815 ISNIRNLVLRIESIQLLFLLKRKRASEIIQSYCFQKTAISYYEQAMENIKKIQFHWRAAY 874 Query: 377 --TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKK-LI 433 RE +N + + L+ + F RS+ + ++ + + K L Sbjct: 875 QRLREVRSKRIKNTYI--IKEVLNKAWQKIFTRSVTTIVEKTKKLVRCYYLKQMFSKQLY 932 Query: 434 DIRNGKGEVDDIDHL-GN------RRIRSVGEMAENQFRV-GLVRVERAVKERLSLGDLD 485 +IR K V + L GN +R + + + + L + + +++ + + + Sbjct: 933 EIRTKKAAVIFLKLLKGNFVRKRIKRFNLAAQKIQAKVKQIWLTELYQKLRKAIII--IQ 990 Query: 486 TLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEI 524 +I + + EF L Q + + E+ Sbjct: 991 RNARIFIIRKRERNQRNAEFL--GPLEQNLKRIRISEEL 1027 >UniRef50_B3RKF6 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RKF6_TRIAD Length = 224 Score = 86.8 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 56/214 (26%) Query: 13 KDFGKRPQVLD--VPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ---SYSGNSE 67 KD+G+ + + + ++SF + GL AA + + + + Sbjct: 19 KDYGRLAATQNKYLQEFVQPHIESFNFLLRD------GLSAAVKDIRQEELQLNDGRRIS 72 Query: 68 LQYVSYRLGEPV------------FDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVK 115 + + +G+P EC+ G TY A +V + + + Sbjct: 73 IYFKDALIGKPTVSEAGSYSSNTILYPAECRELGSTYGANFQVTINWDVDGETSGSLG-- 130 Query: 116 DIKEQEVYMGEIPLMTD------------------------NGTFVINGTERVIVSQLHR 151 + +G IP+M G F++NG E+VI + Sbjct: 131 ------IPLGRIPMMVKCKNCSLYNLTPEQLVAHHDEAEEAGGYFIVNGLEKVIRMIVLP 184 Query: 152 SPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLD 185 + + + + ++ I R D Sbjct: 185 RRN-YPMAISRPSWKNIGASFSEYGIIIRCVRRD 217 Score = 44.8 bits (104), Expect = 0.024, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 46/159 (28%), Gaps = 18/159 (11%) Query: 142 ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII--PYRGSWLDFEFDPKDNLFVRID 199 E + ++ R F D+ GK S Y++ I P L + + + D Sbjct: 61 EELQLNDGRRISIYFKDALIGKPTVSEAGSYSSNTILYPAECRELGSTYGANFQVTINWD 120 Query: 200 -----------RRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG 248 ++P + + + L E + + + +R Sbjct: 121 VDGETSGSLGIPLGRIPMMVKCKNCSLYNLTPEQLVAHHDEAEEAGGYFIVNGLEKVIRM 180 Query: 249 ---ETASFDIEANGKVYVEKGRRIT--ARHIRQLEKDDV 282 ++ + + + G + IR + +D Sbjct: 181 IVLPRRNYPMAISRPSWKNIGASFSEYGIIIRCVRRDQS 219 >UniRef50_P90631 RNA polymerase II second largest subunit (Fragment) n=1 Tax=Moneuplotes crassus RepID=P90631_EUPCR Length = 205 Score = 84.5 bits (207), Expect = 3e-14, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 51/203 (25%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPI- 59 M +++ + L+S Q+ SF +F+ + + V Sbjct: 1 MDPDNSKEITQEDAWALIKAYFQQHGLVSQQISSFDRFLSYTIQDIVAENSIMSIVPEKQ 60 Query: 60 ---------------QSYSGNSELQYVSYRL-GEPVF----------DVQECQIRGVTYS 93 Q E++ ++ +P F E ++R +TY Sbjct: 61 YAPGVRLYLTLGNENQDRDLRYEIELGQVKVNEKPRFKEYDDKYNVIFPNEARLRNLTYQ 120 Query: 94 APLRVKL--RLVIYEREAPEGTVKDIKEQEVYMGEIPLM--------------------- 130 + V++ R + + E ++ KE+EVY+G++P+M Sbjct: 121 TSVYVEVTKRDKVTNSKGVEEVLEKRKEKEVYIGKVPVMIKSAFCSLNRIENEYEMKECF 180 Query: 131 -TDNGTFVINGTERVIVSQLHRS 152 G F+ING+E+V+V+ + Sbjct: 181 FDQGGYFIINGSEKVLVAHEKMA 203 >UniRef50_UPI0001742D24 DNA-directed RNA polymerase beta chain n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001742D24 Length = 107 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 10/99 (10%) Query: 66 SELQYVSYRL---GEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEV 122 +L+Y+ Y + EP+ D EC+ RG TYS L+V+L+L +I+E V Sbjct: 1 MKLEYLWYEIHDNDEPLNDELECKKRGKTYSGQLKVRLKLTN-------KRTGEIQETLV 53 Query: 123 YMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK 161 + G+IPLMTD TF++NG ERV++SQLHRSPG+ F+ + Sbjct: 54 HFGDIPLMTDKATFIVNGAERVVISQLHRSPGITFNKEL 92 >UniRef50_UPI0001924FA9 PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924FA9 Length = 164 Score = 83.4 bits (204), Expect = 6e-14, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 1015 AEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKG 1074 Y ++ + + + K+ + ++K+ + RR + GDK + RHG KG Sbjct: 18 TTDYKDVPTSYHGPIPSYVEKVLISSTMED--AFLIKMLMRQTRRPEIGDKFSSRHGQKG 75 Query: 1075 VISKINPIEDMPYDENGTPVDIV 1097 V I EDMP+ + G DIV Sbjct: 76 VCGLIVNQEDMPFTDLGICPDIV 98 >UniRef50_C0SZK4 DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Borrelia burgdorferi 29805 RepID=C0SZK4_BORBU Length = 115 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 8/109 (7%) Query: 9 KRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG------QYGLEAAFRSVFPIQSY 62 KR+ G+ ++LD+P L+ IQL+S++KF++ D GLE+ FR++FPI+S Sbjct: 3 KRVHLGQGRADEILDLPNLIEIQLNSYEKFLQLDKLKSKKPLLNEGLESVFRNIFPIKSG 62 Query: 63 SGNSELQYVSYRLGEPV--FDVQECQIRGVTYSAPLRVKLRLVIYEREA 109 +G+ L+Y Y + F +EC+ +G +Y A L+V+L L Sbjct: 63 NGDVALEYERYYIENDALNFTEKECKRKGQSYEAVLKVRLNLQFLTTGE 111 >UniRef50_B9RDB2 DNA-directed RNA polymerase beta chain, putative n=1 Tax=Ricinus communis RepID=B9RDB2_RICCO Length = 173 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 2/96 (2%) Query: 618 QANSNLDEEGHFV--EDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDD 675 V E + R + E + +QV + Q S+GASLIPF+EH+D Sbjct: 72 WGGGPAYGVKSIVQEEQVAPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHND 131 Query: 676 ANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVD 711 AN+ALM +NMQRQAVP R++K +VGTG+ER VA++ Sbjct: 132 ANQALMSSNMQRQAVPLSRSEKCIVGTGLERQVALE 167 >UniRef50_C5Y5J9 Putative uncharacterized protein Sb05g004163 (Fragment) n=1 Tax=Sorghum bicolor RepID=C5Y5J9_SORBI Length = 79 Score = 81.4 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 1207 SGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQ-QPLGGKAQF 1265 G + +GRTGE+ + V + + +L H+ +DK+ +T +T QP + Sbjct: 3 MGSENILNGRTGERMQSLVFMDPTFYQRLIHMSEDKVKFHNTEPVQPLTSLQPAADRKGL 62 Query: 1266 GGQRFGEMEVWALEA 1280 E W + A Sbjct: 63 VELNL---EKWRVIA 74 >UniRef50_D1I1U7 Whole genome shotgun sequence of line PN40024, scaffold_79.assembly12x (Fragment) n=2 Tax=core eudicotyledons RepID=D1I1U7_VITVI Length = 191 Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 69/160 (43%), Gaps = 6/160 (3%) Query: 131 TDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDP 190 GT ++NG R++++Q+ +SPG+++ S+ +G +Y I+ G L+ E D Sbjct: 28 NSLGTSIVNGLYRIVINQILQSPGIYYRSELD---HNGISVYTGTIVSDWGGRLELEIDR 84 Query: 191 KDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKV---IFEIRDNKLQMELVPERLR 247 K ++ + R++K+ ++ A+ +IL+ F K ++ L + Sbjct: 85 KARIWSHVSRKQKISILVLSSAMGSNLREILENVCYLEIFLSFLNDKEKKEIGLKESAIL 144 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEV 287 F V+ E + + + + K VK++ Sbjct: 145 EFYQQFACVGGDLVFSESLCKSSYYVMNENFKRVVKVVNK 184 >UniRef50_A3QRU7 RNA polymerase II second largest subunit (Fragment) n=2 Tax=Russula RepID=A3QRU7_9HOMO Length = 287 Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 21/190 (11%), Positives = 51/190 (26%), Gaps = 23/190 (12%) Query: 573 NSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGH---- 628 +L++ A + G + P + + + + +A N Sbjct: 1 KNLALMATISV-GSMSGPIIEFLEEWGLESLEE-NAHSSTLTTKVFVNGVWMGVHRDPTN 58 Query: 629 FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQ 688 +E L R K + V + ++ + + L + + ++ R Sbjct: 59 LIETLKKLRRKDDVHPEVSI-VRDIRERELRLYTDPGRVCRPLFIVEDQQLVLQKKHVRW 117 Query: 689 AVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIV---IKVNEDEMYPGE 745 D + GV++ +DA I + +++ Sbjct: 118 LTQGTMDDGEDFK-------------WQHLTKSGVIELLDAEEEETVMICMTPEDLESAR 164 Query: 746 AGIDIYNLTK 755 +TK Sbjct: 165 LAARGIFITK 174 >UniRef50_Q36704 (S1 sensitive region) (Fragment) n=4 Tax=Embryophyta RepID=Q36704_9ASTR Length = 98 Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 13/107 (12%) Query: 23 DVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQY--VSYRLGEPVF 80 +P IQ + F +FI+Q GL I+ + + ++ Y+L EP+ Sbjct: 3 TIPGFNQIQFEGFCRFIDQ------GLAEELSKFPKIEDTNQEIDFEFFLERYQLVEPLI 56 Query: 81 DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEI 127 ++ +TYS+ L V RL+ + I+EQ + +G+I Sbjct: 57 KERDAVYESLTYSSELYVSARLIWKNDRR-----RYIQEQTILIGKI 98 >UniRef50_C7AA72 RpoB (Fragment) n=36 Tax=Alphaproteobacteria RepID=C7AA72_9BRAD Length = 134 Score = 64.9 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 204 LPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRG--ETASFDIEANGKV 261 LP T ++ AL EQIL F++K+I++ ++ R RG GKV Sbjct: 1 LPVTSLMFALGLDGEQILATFYKKLIYKRIKEGWRVPFDANRFRGYSTVNDLIDADTGKV 60 Query: 262 YVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL 321 +E G+++T R RQL++ +K + + E + G +A+D ++ TGE+ A E++ L Sbjct: 61 VLEAGKKLTVRAARQLQEKGLKALRMSDEELLGNYIAEDLVNPKTGEIYAEAGEEITDKL 120 Query: 322 LAKLSQSGHKR 332 L++ G+K Sbjct: 121 FKVLNEQGYKD 131 >UniRef50_Q7SXI3 Zgc:66298 protein n=2 Tax=Danio rerio RepID=Q7SXI3_DANRE Length = 150 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 6/44 (13%), Positives = 16/44 (36%) Query: 1299 NGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE 1342 + + +P F + E+ ++ I I+L+ + Sbjct: 107 CTYKTICLLCNKSDSIETVSVPYVFKYFVAELAAMNIKIKLDVK 150 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 27/132 (20%) Query: 15 FGKRPQVLDVP--YLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS--YSGNSELQY 70 FG + VP L+ ++SF + GL ++ P++ L + Sbjct: 23 FGVPKEKQSVPVQELVKAHIESFDQ------AVTDGLCRVVEAIPPMEFLYKGDRISLSF 76 Query: 71 VSYRLGEPVFD-----------VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKE 119 V + P EC+ R TY + L+ + ++ E Sbjct: 77 VEAIIHTPSVSKGGISRDLRVFPAECRGRRCTYK-----TICLLCNKSDSIETVSVPYVF 131 Query: 120 QEVYMGEIPLMT 131 + ++ E+ M Sbjct: 132 KY-FVAELAAMN 142 >UniRef50_UPI00016982A9 DNA-directed RNA polymerase subunit beta n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016982A9 Length = 64 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 27/45 (60%), Positives = 36/45 (80%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEG 45 M YS+TEKKRIRKDFGKR +LDVP+LL+ Q++SF+ F++Q Sbjct: 1 MAYSFTEKKRIRKDFGKRTSILDVPFLLATQIESFRDFLQQGWVP 45 >UniRef50_Q8KRK0 RpoB protein (Fragment) n=1 Tax=Pediococcus pentosaceus RepID=Q8KRK0_PEDPE Length = 66 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 51/55 (92%), Positives = 54/55 (98%) Query: 608 AIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 662 AIEEGN+VIAQANSNLD++G FVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS Sbjct: 1 AIEEGNFVIAQANSNLDDDGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS 55 >UniRef50_B9U5W9 RNA polymerase beta subunit (Fragment) n=21 Tax=Acinetobacter RepID=B9U5W9_9GAMM Length = 116 Score = 52.9 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 2/116 (1%) Query: 947 EIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEE 1006 + E ++A ++ L + + + + L L LE+ TDE Sbjct: 3 KEEYKIFEEAARERVIRLLKGQESNGG--GSTKRGDKLVEDMLSGLELVDLLEIQPTDEA 60 Query: 1007 KQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062 +L Q+ E E ++K K+RK++ GD+L GVLK+VKVYLAVKRRIQP Sbjct: 61 IAERLSQIQVFLKEKSAEIDEKFAEKKRKLSTGDELTTGVLKVVKVYLAVKRRIQP 116 >UniRef50_B5Z8J4 DNA-directed RNA polymerase, beta subunit n=1 Tax=Helicobacter pylori G27 RepID=B5Z8J4_HELPG Length = 67 Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%) Query: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVF 57 M K R+R DF K P L+VP LL +Q DS+ F+ + G++ Sbjct: 1 MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGMKRFLNPFS 57 >UniRef50_Q01GR5 RPB2_LYCES DNA-directed RNA polymerase II 135 kDa polypeptide (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01GR5_OSTTA Length = 86 Score = 47.5 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 17/47 (36%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAA 52 ++ + + L+ QLDSF +FI+ + G Sbjct: 28 RAERLQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVGTYRE 74 >UniRef50_A8I790 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8I790_CHLRE Length = 116 Score = 46.8 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 21 VLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN----SELQYVSYRLG 76 L+ L+ + SF FI GL+ S+ P++ + + R+ Sbjct: 36 PLEYQKLVEPHVASFNYFI------GEGLQNVVESLQPVEVTHPTTGLVTRIWLSDVRVE 89 Query: 77 EPVFDVQE 84 +P+ +E Sbjct: 90 KPLVAAKE 97 >UniRef50_Q7RFQ7 235 kDa rhoptry protein (Fragment) n=4 Tax=Plasmodium (Vinckeia) RepID=Q7RFQ7_PLAYO Length = 1081 Score = 46.0 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 38/417 (9%), Positives = 115/417 (27%), Gaps = 9/417 (2%) Query: 13 KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVS 72 K + ++ L+ ++ D + + L + + +L++ + Sbjct: 521 KVKNINEKKKELEKLIELKKDIENYINQINILLNDSLYEVVDFANKKNKINDDIKLEFKN 580 Query: 73 YRLGEPVFDVQEC---QIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVY--MGEI 127 + V EC + +A +++ + E ++ + +I E+ + + Sbjct: 581 FYNDGVENLVAECSTLINENMIEAAQNDEQIKKHLGELDSKYDKINNITFDEISKVLNNV 640 Query: 128 PLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFE 187 + +IN + + +S + + + + E Sbjct: 641 NNKKEALLELINEIKTYTYYHMINDLSSILNSVQTIDKHLQSSIDSYYGLYNELKNYKEE 700 Query: 188 FDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLR 247 K N+ D ++ L ++ + D+ I L + Sbjct: 701 ILKKKNMDYEYDSKKILEY--SNNFISKENIILKDIEEISKISNEVKTSLPKYDNEVKKI 758 Query: 248 GETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTG 307 ++ + K+ + + ++ + + + +D Sbjct: 759 YPNSNGEYLQVKKLIEQIKEYTSEEYLNKYRNKVNDIKTTVSDETKQIQTTNKRMDNYKV 818 Query: 308 ELICAANMELSLDLLAKLSQSGHKRIETLFTND--LDHGPYISETLRVDPTNDRLSALVE 365 + +L+ + + + L + + + I+ET++ + + Sbjct: 819 LNTVMQQYQSIYELIKNIINGKNVLNDLLRQSIQAIQNYDNINETVKNSSIETLNNKISM 878 Query: 366 IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSK 422 I + E S + F S + + N EI+ + Sbjct: 879 IDDKLNTTTINDIETKLSTLKEYFTSTKQQIMENSEIEDDNLLQNVNEIDQVQNSTN 935 >UniRef50_UPI0001924A1B PREDICTED: similar to DNA-dependent RNA polymerase II RPB140 n=1 Tax=Hydra magnipapillata RepID=UPI0001924A1B Length = 332 Score = 46.0 bits (107), Expect = 0.011, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 63/209 (30%), Gaps = 39/209 (18%) Query: 301 YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL 360 + G +I + ++A G + I E D T+ + Sbjct: 6 IKIKKDGIMIVKIPISYEKSVMALFRALGVES-----------DRDIIEICTYDKTDYHM 54 Query: 361 SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL 420 L + E+ +L + + + Sbjct: 55 IEL-------------ILASLEACKLHLLNLLKKSFVPHIEES----------PNTPYRE 91 Query: 421 SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN----QFRVGLVRVERAVK 476 + D++ KL+ + + VD+ D +R+ ++ E+ E Q++ + + Sbjct: 92 KACYLEDMINKLLKVELSRAPVDNRDAYTKKRVDNIRELFEEIMVQQYKNNMNECSKQFT 151 Query: 477 ERLSLGDLDTLMPQDMINAKPISAAVKEF 505 R+ + D P ++I+ + + F Sbjct: 152 ARMG-DNSDAAEPYNVIHQFKAATFEQGF 179 >UniRef50_Q9XDQ2 ORF12 protein n=2 Tax=cellular organisms RepID=Q9XDQ2_AGGAC Length = 1416 Score = 45.2 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 45/372 (12%), Positives = 94/372 (25%), Gaps = 30/372 (8%) Query: 149 LHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATI 208 + T S V Y+ + + + K I++ L Sbjct: 248 YIEITNDILNYKVNFTELSNMVEYSNINYNMY-NLVKYIIKNKFINRNEINKNTLLNIIT 306 Query: 209 ILRALNYTT---EQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEK 265 R + LF K +N + +++ + A F+I +N Sbjct: 307 RQRNFYIDKIFGDGFCQLFLNKENHFSEENSFKKKIINNSIVD--AFFNINSNEVSEFRF 364 Query: 266 GRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKL 325 LE + + ++ I G ++ K Sbjct: 365 DPSNNPALFSGLE--IIIHYKDNSRENIYNYSYENLIKLDNGNFFSLSSDPRLFFKSKKN 422 Query: 326 SQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLF 385 + N+ + I + T +R +E G+ + E Sbjct: 423 KFITLINVRYYLYNNNLYEKIIQNYISKYKTIERNDLQLENISSRYEGKIKSLENKIHFN 482 Query: 386 ENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNG-----KG 440 E RY + + + + + II L + N + Sbjct: 483 LKKHEDELRYLKNKINFNLKEYEINLLVERNKIEILNNKIISKNNILRKLYNKYRKNVRS 542 Query: 441 EVDDIDHLGNRRIRSVGEM-----------------AENQFRVGLVRVERAVKERLSLGD 483 + D I L N+R+ + + ++ +K+ + D Sbjct: 543 QNDYIVSLSNQRLVLEKNLSEIINDREKKIRDLDAILTGIMQSRGYKLLMKIKKIFNKTD 602 Query: 484 LDTLMPQDMINA 495 D L + N+ Sbjct: 603 YDILRKSGLFNS 614 >UniRef50_Q67XZ1 DNA-directed RNA polymerase II second largest chain n=1 Tax=Arabidopsis thaliana RepID=Q67XZ1_ARATH Length = 124 Score = 44.8 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 16/42 (38%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY 47 E+ + + L+ QLDSF +FI+ + Sbjct: 18 DEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIV 59 >UniRef50_Q234Z7 TPR Domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q234Z7_TETTH Length = 1325 Score = 44.5 bits (103), Expect = 0.027, Method: Composition-based stats. Identities = 36/320 (11%), Positives = 86/320 (26%), Gaps = 26/320 (8%) Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFV 196 +IN R + +L V+F + K L + ++ + Sbjct: 803 IINPKRREVYEKLAYLENVYFKNKDQAILYYLKELEINQSETSMVHLVNIYLEKNQYQLA 862 Query: 197 RIDRRRKLPATIILRALNYTTEQILDLFF-EKVIFEIRDNKLQMELVPERLRGETASFDI 255 + L + L ++ +L +I L ++ E I Sbjct: 863 EEHLNKYLQIFPNNKELKFSKAVLLKSKNSIDEAIQILKEILLTNQSDFKIYNELGY--I 920 Query: 256 EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANM 315 K + R + + + + Y+ K + + Sbjct: 921 YQTYKQDYNESLIYYNRSLEINNQVTSIYYNIALIYLYFKNYDYAEKLLKDYIKYFSNDY 980 Query: 316 ELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEP 375 + +I + Y T++++P +++ + ++ E Sbjct: 981 K---------GYFDLGQIYYIKNELPIAASYFLRTIQMEPNHEQAY---YLLSQIQIREN 1028 Query: 376 PTREAAESLFENLFFSEDRYD-----------LSAVGRMKFNRSLLREEIEGSGILSKDD 424 +A SL + + RYD + L+ E L + Sbjct: 1029 KYADAIVSLKKVRELNLKRYDALLDLANLYSIENPQLSSDLFFQFLQHEPLNKEALKAYN 1088 Query: 425 IIDVMKKLIDIRNGKGEVDD 444 I + L +++ ++ D Sbjct: 1089 QITNGQFLKNLQKELDKIQD 1108 >UniRef50_Q7RF77 Putative uncharacterized protein PY04831 n=6 Tax=Plasmodium (Vinckeia) RepID=Q7RF77_PLAYO Length = 2140 Score = 44.5 bits (103), Expect = 0.029, Method: Composition-based stats. Identities = 42/330 (12%), Positives = 100/330 (30%), Gaps = 21/330 (6%) Query: 186 FEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPER 245 + + + R + ++L +F+ + +K L + Sbjct: 1417 YYVFSQKGKYKNQKRIYYNCIKTDISNCYNIINKLLCIFYYNDNLNLYYHKYLKYLCFKI 1476 Query: 246 LRGETASFDIEANGKVY--VEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYID 303 + F I+ ++KG +I + +D+ ++ + ++ ++ Sbjct: 1477 FKKIYNLFSIKEVDLYIDFLKKGNQIDNKIYNDKNINDIICLKNEIISFYEYILNEEIEV 1536 Query: 304 ESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSAL 363 + +N + + K + D+ ++ +L Sbjct: 1537 YTKKNGNKISNKITISENYRFYFANNLKCDHIV--LKNDNFIFMINSLLFIFNIKYDKIT 1594 Query: 364 VE-----IYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSG 418 I E S + F D Y+ K N+ L IE Sbjct: 1595 FYKIVSIILMEKPENRNYILEKVISSIKKFFNLSDIYNNLKKTFNKNNQIRLPNYIENH- 1653 Query: 419 ILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKER 478 ++ +++ I I + D +HL + I ++ N F+ ++ ++++K Sbjct: 1654 ----SMLLYIIRTTILIFL----LIDYNHLNKQDIEKEDYISYNSFKNDYIK-KKSIKYY 1704 Query: 479 LSLGDLDTLMPQDMINAKPISAAVKEFFGS 508 + +L N K I K FF + Sbjct: 1705 YTQLNLLLFRVFY--NEKNIPYFFKIFFST 1732 >UniRef50_B9W484 Putative RNA polymerase subunit LEF-8 n=1 Tax=Cotesia congregata RepID=B9W484_COTCN Length = 1044 Score = 44.5 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 46/343 (13%), Positives = 93/343 (27%), Gaps = 26/343 (7%) Query: 883 LVGKVTPKGETQLTPEEKLLRAIFGEKASD-VKDSSLRVPNGV---SGTVIDVQVFTRDG 938 L + T + +L FG+ ++D + V +I V + + Sbjct: 706 LFSLLCSNDYTDRNTNQLVLYCAFGDVGGGCIEDGIILDKTFVANAPNKLISVTLAVKFM 765 Query: 939 VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 + ++ Q++K + + + R + K + R+ Sbjct: 766 TQDSGYNAHDKKHTHFQSEKSNASVKNENDINTGRKSRRNSKSLQFLNVKYSPINREIDK 825 Query: 999 ELGLTDEEKQNQL---EQLAEQYDELKHEFEKKLEAKRRKIT----QGDDLAPGVLKIVK 1051 L +L + E + + T + + Sbjct: 826 CLIFGVISSNQKLLTFKSKNVNIVETNLKTHNFYVIYCVEFTHYEKTIESYYNESTNTLI 885 Query: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPY----DENG--TPVDIVLNPLGVPS 1105 ++ R I K +HG K ++S + D+ Y +G ++ + V Sbjct: 886 IHYRYLRPIGIDMKFCNKHGQKAIVSCV---RDLSYYRAWTRSGKCIHPQVLYSMQSVIG 942 Query: 1106 RMNIGQILETHLGMAA--KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLST 1163 RM GQ+ E G+ + M V + A + Sbjct: 943 RMAAGQVHEMLSNEECGFSENGEVVAPMSFVIHSVESSVKSKITAALRID----LMTQQN 998 Query: 1164 FSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPT 1206 D + L A+ +KEL KL + Sbjct: 999 GFDANMCTGLALLATTQHAGNFTDSYARLHYLKELFKLNGINF 1041 >UniRef50_B6TQP3 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B6TQP3_MAIZE Length = 126 Score = 44.1 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 18/60 (30%) Query: 6 TEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGN 65 E + + L+ QLDSF +FI+ + A Q G Sbjct: 56 QEDITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGR 115 >UniRef50_D2V7D7 Asparagine synthase n=1 Tax=Naegleria gruberi RepID=D2V7D7_NAEGR Length = 2089 Score = 43.7 bits (101), Expect = 0.057, Method: Composition-based stats. Identities = 39/331 (11%), Positives = 91/331 (27%), Gaps = 29/331 (8%) Query: 196 VRIDRRRKLPATIILRAL-NYTTEQILDLFF----EKVIFEIRDNKLQMELVPERLRGET 250 V + + ++L + IL +K FEI + + + Sbjct: 1271 VNQSTKPNVDLGVLLDKCVTMKGQNILYYLMVKQVDKKEFEIPNGYKWDPTIDFEYKQYQ 1330 Query: 251 AS------FDIEANGKVYVEKGRRITAR-----HIRQLEKDDVKLIEVPVEYIAGKVVAK 299 F IE Y A + D + L + Sbjct: 1331 KYENLDESFVIEKLESHYSGSRWVYNAMDYYKSVTSKTYSDGLWLGYFNFKLTERGSYQL 1390 Query: 300 DYIDESTGELI-CAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTND 358 D++ + + + + L L + + ++ + + Y+ ETL Sbjct: 1391 LVEDKARFMIPSIKISDKFDIRKLRDLLANNFSSLSSVTNINEETPDYLCETLEKQVFRA 1450 Query: 359 RLSALVEI----YRMMRPGEPPTREAAES---LFENLFFSEDRYDLSAVGRMKFNRSLLR 411 +L +I + E +N S+ + + V Sbjct: 1451 KLQLQQKICKPDLGYLYTNEILDVGERIKLILFIDNDTTSQIGNEYNRVLWRDEISFEAI 1510 Query: 412 EEIEGSGILSKDDIIDVMKKLI--DIRNGKGEVDDIDHLGNRRIRSVG---EMAENQFRV 466 +L + + ++ K+L+ + ++L N+ + ++G E+ + Sbjct: 1511 HLSLFYPVLHEHYMGNIRKQLLFDNSVFNDSSTSSDEYLKNKEVNNIGRLKELIRAEEAF 1570 Query: 467 GLVRVERAVKERLSLGDLDTLMPQDMINAKP 497 ++R V + +IN Sbjct: 1571 YIIRWPHRVISTYLSIKQNNNAILHLINNGK 1601 >UniRef50_B3PMQ9 Massive surface protein MspC n=4 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMQ9_MYCA5 Length = 2719 Score = 43.3 bits (100), Expect = 0.066, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 91/263 (34%), Gaps = 25/263 (9%) Query: 258 NGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMEL 317 + + + I++ D L +++ A+++I++ + + Sbjct: 2330 KEANIHLESIKKVLKEIKENNSDVEFLKLKKRDFLTKIDDARNFINKEDVKKLEEIGELR 2389 Query: 318 SLDLLAKLSQSGHKRIETLFTNDLDHGPYISETL-RVDPTNDRLSALVEIYRMMRPGEPP 376 S K + +R + + +N L+H + + + + + + Sbjct: 2390 SYLKNLKDIFAKAERSDEIISNTLNHYEELKNVYVLGAAISLLENVFKDFFSQINDDNIN 2449 Query: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436 E + S N F S V K + + +S I++ + Sbjct: 2450 NLETSISNILNTFSLLINEPRSKVLEAK---EFVNNPENNNEYISSKKILEQT-----LN 2501 Query: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496 G +++DI++L N ++ V E+ + + V+ +++ + T +D IN Sbjct: 2502 IGLQKINDINNLINSSLKKVIEILDANL--------KNVEAKINGANDKTKSIKDFIN-- 2551 Query: 497 PISAAVKEFFGSSQLSQFMDQNN 519 ++FF L +F Q N Sbjct: 2552 ------QDFFKKGDLEEFAKQIN 2568 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.118 0.296 Lambda K H 0.267 0.0363 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,729,119,539 Number of Sequences: 3077464 Number of extensions: 175632290 Number of successful extensions: 534985 Number of sequences better than 1.0e-01: 1000 Number of HSP's better than 0.1 without gapping: 918 Number of HSP's successfully gapped in prelim test: 2775 Number of HSP's that attempted gapping in prelim test: 521246 Number of HSP's gapped (non-prelim): 8501 length of query: 1342 length of database: 1,040,396,356 effective HSP length: 141 effective length of query: 1201 effective length of database: 606,473,932 effective search space: 728375192332 effective search space used: 728375192332 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 99 (42.9 bits)